Query 004370
Match_columns 758
No_of_seqs 405 out of 1231
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 23:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvr_A Dynamin-1; hydrolase, D 100.0 1.6E-99 5E-104 892.0 38.1 563 3-665 177-765 (772)
2 3szr_A Interferon-induced GTP- 100.0 1.3E-67 4.4E-72 613.1 32.5 421 3-664 174-605 (608)
3 3ljb_A Interferon-induced GTP- 100.0 1.5E-30 5.3E-35 273.1 19.0 164 182-348 3-175 (271)
4 1dyn_A Dynamin; signal transdu 99.9 1.9E-27 6.7E-32 220.9 3.5 106 422-543 13-121 (125)
5 3t34_A Dynamin-related protein 99.9 1.6E-24 5.5E-29 235.6 7.7 165 3-183 163-329 (360)
6 2x2e_A Dynamin-1; nitration, h 99.9 6.4E-23 2.2E-27 222.7 16.2 184 3-202 157-344 (353)
7 1wi1_A Calcium-dependent activ 99.8 4.3E-19 1.5E-23 166.3 5.7 96 422-539 9-109 (126)
8 1v88_A Oxysterol binding prote 99.7 7.1E-19 2.4E-23 165.9 5.9 101 422-541 9-125 (130)
9 1x1f_A Signal-transducing adap 99.7 2.1E-18 7.2E-23 166.5 6.9 96 422-541 19-114 (149)
10 1wgq_A FYVE, rhogef and PH dom 99.7 2.4E-18 8.1E-23 155.2 6.0 96 422-541 9-104 (109)
11 1x05_A Pleckstrin; PH domain, 99.7 4.6E-18 1.6E-22 157.6 7.2 103 422-541 19-121 (129)
12 2d9x_A Oxysterol binding prote 99.7 2.6E-18 9E-23 158.0 5.5 95 422-541 9-105 (120)
13 4a6h_A Phosphatidylinositol 4, 99.7 1.7E-18 5.9E-23 161.3 3.8 108 422-539 7-117 (120)
14 1fgy_A GRP1; PH domain, signal 99.7 2.7E-18 9.1E-23 157.8 4.8 103 422-541 6-121 (127)
15 2i5f_A Pleckstrin; PH domain, 99.7 4.4E-18 1.5E-22 152.5 5.8 101 422-539 8-108 (109)
16 2dhk_A TBC1 domain family memb 99.7 6E-18 2.1E-22 155.7 6.4 95 422-541 9-105 (119)
17 2w2x_D 1-phosphatidylinositol- 99.7 3E-18 1E-22 159.6 4.1 99 422-541 13-120 (124)
18 2coc_A FYVE, rhogef and PH dom 99.7 6.7E-18 2.3E-22 155.5 6.4 97 422-540 9-106 (112)
19 1v89_A Hypothetical protein KI 99.7 7.9E-18 2.7E-22 152.5 5.5 105 422-541 9-113 (118)
20 1pls_A Pleckstrin homology dom 99.7 1.2E-17 3.9E-22 151.4 6.2 97 422-541 6-102 (113)
21 1x1g_A Pleckstrin 2; PH domain 99.7 1.5E-17 5E-22 153.9 6.8 106 422-541 19-125 (129)
22 2dn6_A KIAA0640 protein; PH do 99.7 2.4E-17 8E-22 149.2 6.4 95 422-541 9-104 (115)
23 1v5u_A SBF1, SET binding facto 99.7 1.7E-17 5.7E-22 150.6 5.4 103 422-541 9-112 (117)
24 2d9y_A Pleckstrin homology dom 99.7 3.1E-17 1.1E-21 148.8 6.9 98 422-541 12-110 (117)
25 2dkp_A Pleckstrin homology dom 99.7 3.6E-17 1.2E-21 150.9 7.1 97 422-540 22-119 (128)
26 1upq_A PEPP1; PH domain, phosp 99.7 2.4E-17 8.2E-22 151.1 5.6 98 422-541 12-110 (123)
27 2rsg_A Collagen type IV alpha- 99.7 1.8E-17 6.3E-22 145.6 4.0 89 422-538 2-92 (94)
28 1v5p_A Pleckstrin homology dom 99.7 2.5E-17 8.5E-22 154.5 5.0 98 422-540 16-120 (126)
29 2yry_A Pleckstrin homology dom 99.7 7.4E-17 2.5E-21 147.6 7.8 97 422-540 23-120 (122)
30 1u5d_A SKAP55, SRC kinase-asso 99.7 1.9E-17 6.5E-22 147.4 3.6 98 422-540 4-105 (108)
31 1fao_A Dual adaptor of phospho 99.7 3.8E-17 1.3E-21 150.8 5.6 95 422-541 19-113 (126)
32 1wg7_A Dedicator of cytokinesi 99.7 3.1E-17 1.1E-21 156.2 5.0 97 422-541 19-125 (150)
33 3rcp_A Pleckstrin homology dom 99.7 2.6E-17 8.8E-22 146.7 3.9 91 424-541 2-94 (103)
34 2d9v_A Pleckstrin homology dom 99.7 5.1E-17 1.8E-21 152.1 5.7 98 422-541 9-115 (130)
35 1btk_A Bruton'S tyrosine kinas 99.6 4.3E-17 1.5E-21 160.2 4.6 109 422-541 4-133 (169)
36 1eaz_A Tandem PH domain contai 99.6 6.4E-17 2.2E-21 148.4 5.0 97 422-541 15-112 (125)
37 3aj4_A Pleckstrin homology dom 99.6 5.5E-17 1.9E-21 146.7 4.3 98 422-539 6-110 (112)
38 2cod_A Centaurin-delta 1; ARF 99.6 9E-17 3.1E-21 146.1 5.4 90 422-541 9-100 (115)
39 1unq_A RAC-alpha serine/threon 99.6 3.9E-17 1.3E-21 150.7 2.8 103 422-541 9-111 (125)
40 2p0d_A RHO GTPase-activating p 99.6 1.1E-16 3.9E-21 150.0 5.2 96 422-541 13-125 (129)
41 2y7b_A Actin-binding protein a 99.6 9.9E-17 3.4E-21 149.3 4.4 108 422-541 6-129 (134)
42 3cxb_B Pleckstrin homology dom 99.6 1.7E-16 5.7E-21 145.2 5.2 97 423-541 2-102 (112)
43 2rlo_A Centaurin-gamma 1; spli 99.6 2E-16 6.9E-21 147.3 5.4 101 422-541 5-125 (128)
44 1u5f_A SRC-associated adaptor 99.6 2.3E-16 7.9E-21 150.2 5.7 99 422-541 18-120 (148)
45 2cof_A Protein KIAA1914; PH do 99.6 2.7E-16 9.2E-21 141.7 4.2 93 422-541 9-102 (107)
46 2lul_A Tyrosine-protein kinase 99.6 4.1E-16 1.4E-20 152.3 5.3 100 422-541 16-122 (164)
47 2da0_A 130-kDa phosphatidylino 99.6 6E-16 2.1E-20 141.1 5.8 91 422-541 11-102 (114)
48 1wjm_A Beta-spectrin III; PH d 99.6 6.9E-16 2.3E-20 142.3 6.1 96 422-541 9-118 (123)
49 1btn_A Beta-spectrin; signal t 99.6 8E-16 2.7E-20 137.1 5.1 92 423-538 1-106 (106)
50 2r09_A Cytohesin-3; autoinhibi 99.6 7E-16 2.4E-20 167.8 4.9 103 422-541 214-329 (347)
51 1u5e_A SRC-associated adaptor 99.6 1.3E-15 4.5E-20 154.7 5.9 101 420-541 105-209 (211)
52 1dro_A Beta-spectrin; cytoskel 99.6 2.8E-15 9.6E-20 138.4 6.8 96 422-541 9-120 (122)
53 2j59_M RHO-GTPase activating p 99.5 1.8E-15 6.3E-20 146.9 4.1 95 422-541 4-112 (168)
54 3a8p_A T-lymphoma invasion and 99.5 4.4E-15 1.5E-19 155.8 5.1 96 422-541 12-125 (263)
55 3lju_X ARF-GAP with dual PH do 99.5 6.5E-15 2.2E-19 162.4 6.2 102 422-541 270-373 (386)
56 3tfm_A Myosin X; split PH doma 99.5 4.6E-15 1.6E-19 152.2 4.6 95 420-541 57-156 (228)
57 2dtc_A RAL guanine nucleotide 99.5 7.3E-15 2.5E-19 138.0 4.4 96 422-541 7-113 (126)
58 1qqg_A IRS-1, insulin receptor 99.5 8E-15 2.7E-19 153.9 5.0 92 422-541 11-113 (264)
59 2aka_B Dynamin-1; fusion prote 99.5 1.8E-13 6.2E-18 143.0 14.8 146 3-164 152-299 (299)
60 3tca_A Amyloid beta A4 precurs 99.5 1.4E-14 4.8E-19 151.9 5.1 109 422-541 169-277 (291)
61 2q13_A DCC-interacting protein 99.5 1.8E-14 6.1E-19 158.3 5.6 96 421-541 278-376 (385)
62 4h8s_A DCC-interacting protein 99.5 9.5E-13 3.2E-17 145.6 19.3 95 422-541 302-399 (407)
63 1jwy_B Dynamin A GTPase domain 99.4 2.8E-13 9.5E-18 143.0 12.2 155 4-174 159-315 (315)
64 3lju_X ARF-GAP with dual PH do 99.4 2.4E-14 8.2E-19 157.9 3.8 100 422-540 147-246 (386)
65 2fjl_A 1-phosphatidylinositol- 99.4 4.3E-14 1.5E-18 135.7 4.7 98 422-540 2-148 (150)
66 3pp2_A RHO GTPase-activating p 99.4 4.4E-14 1.5E-18 131.5 4.4 96 422-540 9-123 (124)
67 2ys3_A UNC-112-related protein 99.3 7E-13 2.4E-17 125.3 6.6 99 422-541 10-113 (137)
68 2rov_A RHO-associated protein 99.3 3.9E-13 1.3E-17 124.6 4.8 105 423-540 3-115 (117)
69 4ejn_A RAC-alpha serine/threon 99.2 1.7E-12 5.7E-17 143.9 3.3 100 422-541 7-109 (446)
70 2d9w_A Docking protein 2; PH d 99.1 4.2E-11 1.4E-15 111.3 5.6 98 422-541 13-122 (127)
71 3a8n_A TIAM-1, T-lymphoma inva 99.1 2.2E-11 7.5E-16 128.5 4.2 95 422-540 12-124 (279)
72 3hk0_A Growth factor receptor- 99.0 1.4E-10 5E-15 121.0 5.3 106 422-541 133-241 (256)
73 4f7h_A Fermitin family homolog 99.0 2E-10 6.9E-15 111.2 4.4 98 422-540 48-150 (173)
74 4gmv_A RAS-associated and plec 99.0 2.7E-10 9.1E-15 120.4 5.7 106 422-541 159-267 (281)
75 4bbk_A Kindlin-1, fermitin fam 98.9 7.7E-10 2.6E-14 106.2 3.9 97 422-540 27-129 (165)
76 1w1g_A HPDK1, 3-phosphoinositi 98.9 7.8E-10 2.7E-14 106.2 3.2 87 422-541 53-140 (151)
77 2coa_A Protein kinase C, D2 ty 98.4 3.7E-07 1.3E-11 84.9 5.8 100 422-541 9-120 (125)
78 2d9z_A Protein kinase C, NU ty 98.2 1.3E-06 4.3E-11 81.5 6.1 100 422-541 9-124 (129)
79 1v5m_A SH2 and PH domain-conta 97.7 7E-05 2.4E-09 70.1 7.1 88 434-541 39-131 (136)
80 3tfm_A Myosin X; split PH doma 97.7 9.6E-06 3.3E-10 82.8 1.3 47 421-469 21-67 (228)
81 1v61_A RAC/CDC42 guanine nucle 97.4 0.0002 6.9E-09 67.5 6.5 96 422-541 29-127 (132)
82 3ml4_A Protein DOK-7; tyrosine 97.2 0.00022 7.5E-09 72.4 4.5 93 422-539 10-112 (224)
83 1zc3_B Exocyst complex protein 96.9 0.00052 1.8E-08 62.9 4.0 94 422-540 9-107 (113)
84 1mai_A Phospholipase C delta-1 96.9 0.00089 3E-08 62.6 5.2 91 438-541 29-122 (131)
85 3mpx_A FYVE, rhogef and PH dom 96.8 0.00055 1.9E-08 75.7 3.1 92 422-541 245-338 (434)
86 1dbh_A Protein (human SOS 1); 96.2 0.0032 1.1E-07 67.7 4.5 91 422-540 248-349 (354)
87 2pz1_A RHO guanine nucleotide 96.1 0.0038 1.3E-07 69.8 5.2 103 422-541 335-441 (466)
88 3ky9_A Proto-oncogene VAV; cal 96.1 0.0035 1.2E-07 72.4 4.9 101 422-541 407-508 (587)
89 2lg1_A A-kinase anchor protein 96.1 0.005 1.7E-07 61.0 5.1 95 422-541 72-173 (185)
90 3jzy_A Intersectin 2; C2 domai 96.1 0.001 3.4E-08 74.8 0.0 91 422-541 254-363 (510)
91 2dfk_A Collybistin II; DH doma 96.0 0.0034 1.2E-07 69.0 4.0 103 422-541 258-364 (402)
92 2vrw_B P95VAV, VAV1, proto-onc 95.9 0.0049 1.7E-07 67.6 4.7 101 422-541 235-336 (406)
93 1txd_A RHO guanine nucleotide 95.6 0.0084 2.9E-07 65.2 4.8 95 422-541 258-370 (385)
94 3p6a_A RHO guanine nucleotide 95.5 0.0088 3E-07 64.6 4.7 95 422-541 260-372 (377)
95 2j69_A Bacterial dynamin-like 95.4 0.13 4.3E-06 60.7 14.3 56 3-61 191-246 (695)
96 3odw_A RHO guanine nucleotide 95.3 0.0093 3.2E-07 68.2 4.3 95 422-541 413-525 (536)
97 1xcg_A PDZ-rhogef, RHO guanine 95.3 0.01 3.5E-07 64.0 4.3 95 422-540 254-366 (368)
98 3t06_A PDZ-rhogef, RHO guanine 95.2 0.011 3.9E-07 64.8 4.3 96 422-541 296-409 (418)
99 2z0q_A XPLN, RHO guanine nucle 95.2 0.011 3.9E-07 63.1 4.1 105 422-539 233-345 (346)
100 1kz7_A Guanine nucleotide exch 95.1 0.011 3.8E-07 63.7 3.6 95 422-541 211-326 (353)
101 1nty_A Triple functional domai 94.8 0.018 6.2E-07 60.8 4.3 98 422-541 204-309 (311)
102 3qwm_A Iqsec1, IQ motif and SE 94.7 0.029 1E-06 53.2 4.9 84 438-541 34-123 (140)
103 3ksy_A SOS-1, SON of sevenless 94.0 0.039 1.3E-06 68.0 5.4 91 422-540 445-546 (1049)
104 2rgn_B RHOA/RAC/CDC42 exchange 92.9 0.055 1.9E-06 58.3 3.7 85 435-541 226-319 (354)
105 1foe_A T-lymphoma invasion and 89.6 0.24 8.2E-06 53.5 4.5 67 461-541 301-367 (377)
106 3v5w_A G-protein coupled recep 81.9 0.85 2.9E-05 53.7 4.1 92 422-540 560-652 (689)
107 1z87_A Alpha-1-syntrophin; pro 78.9 1.5 5E-05 45.7 4.2 56 464-539 206-261 (263)
108 3qr0_A Phospholipase C-beta (P 72.2 2.3 7.8E-05 51.1 4.0 114 422-541 22-143 (816)
109 4dhe_A Probable GTP-binding pr 63.5 4.1 0.00014 39.4 3.2 56 3-61 103-160 (223)
110 3ohm_B 1-phosphatidylinositol- 63.1 7.2 0.00025 47.2 5.8 113 422-541 21-140 (885)
111 1fho_A UNC-89; pleckstrin homo 61.7 5.1 0.00017 36.7 3.3 93 422-539 11-111 (119)
112 3iev_A GTP-binding protein ERA 60.6 26 0.0009 36.4 9.0 53 4-59 84-136 (308)
113 2zkm_X 1-phosphatidylinositol- 60.4 6.2 0.00021 47.2 4.6 97 438-541 34-136 (799)
114 1svi_A GTP-binding protein YSX 59.8 5.5 0.00019 37.4 3.3 54 4-61 94-150 (195)
115 2adz_A Alpha-1-syntrophin; pro 59.3 8.1 0.00028 38.0 4.4 56 464-539 121-176 (178)
116 2dyk_A GTP-binding protein; GT 57.9 15 0.0005 32.9 5.8 53 4-60 71-123 (161)
117 2yc2_C IFT27, small RAB-relate 54.8 33 0.0011 32.0 7.9 52 4-59 88-146 (208)
118 2fg5_A RAB-22B, RAS-related pr 52.6 12 0.00041 35.2 4.4 68 4-73 87-156 (192)
119 3pqc_A Probable GTP-binding pr 50.9 8.9 0.0003 35.6 3.1 55 4-61 93-149 (195)
120 2il1_A RAB12; G-protein, GDP, 49.4 13 0.00046 35.0 4.2 54 3-60 89-146 (192)
121 1z0f_A RAB14, member RAS oncog 49.0 14 0.00048 33.6 4.1 53 4-60 79-135 (179)
122 3t5d_A Septin-7; GTP-binding p 47.5 14 0.00049 37.5 4.3 44 13-60 116-159 (274)
123 2f7s_A C25KG, RAS-related prot 47.5 34 0.0012 32.5 6.8 55 3-60 98-156 (217)
124 2lkc_A Translation initiation 47.3 15 0.00052 33.5 4.1 51 6-60 72-122 (178)
125 3bc1_A RAS-related protein RAB 44.6 21 0.00071 32.9 4.6 54 3-60 84-142 (195)
126 3iby_A Ferrous iron transport 44.4 11 0.00039 38.2 2.9 53 2-60 71-125 (256)
127 2a9k_A RAS-related protein RAL 43.7 24 0.00082 32.3 4.8 54 3-60 80-138 (187)
128 2bov_A RAla, RAS-related prote 43.7 30 0.001 32.4 5.6 54 3-60 76-134 (206)
129 3t34_A Dynamin-related protein 43.4 6.6 0.00023 41.8 1.0 76 580-660 280-355 (360)
130 3a98_B Engulfment and cell mot 42.2 25 0.00086 35.0 4.9 36 497-540 115-150 (203)
131 1u8z_A RAS-related protein RAL 42.0 19 0.00065 32.2 3.8 54 3-60 66-124 (168)
132 2g6b_A RAS-related protein RAB 41.4 21 0.00072 32.6 4.1 56 4-60 75-131 (180)
133 3t1o_A Gliding protein MGLA; G 41.0 32 0.0011 31.7 5.3 67 4-73 89-161 (198)
134 1z06_A RAS-related protein RAB 40.9 27 0.00093 32.5 4.8 53 4-60 85-142 (189)
135 4bas_A ADP-ribosylation factor 40.6 24 0.00084 32.8 4.4 56 3-60 77-142 (199)
136 1t9h_A YLOQ, probable GTPase E 40.5 25 0.00085 37.1 4.8 63 9-73 83-147 (307)
137 3tkl_A RAS-related protein RAB 40.3 24 0.00081 32.8 4.3 57 4-61 80-137 (196)
138 2gf9_A RAS-related protein RAB 39.8 16 0.00054 34.2 2.9 56 4-60 86-142 (189)
139 2hup_A RAS-related protein RAB 39.7 47 0.0016 31.5 6.4 57 3-60 92-149 (201)
140 1kao_A RAP2A; GTP-binding prot 39.7 29 0.00098 30.9 4.6 54 3-60 65-123 (167)
141 2qpt_A EH domain-containing pr 38.8 21 0.00071 40.7 4.2 54 4-60 180-233 (550)
142 3dz8_A RAS-related protein RAB 38.7 33 0.0011 32.0 5.0 57 3-60 86-143 (191)
143 2bme_A RAB4A, RAS-related prot 37.5 26 0.00089 32.2 4.0 54 3-60 73-130 (186)
144 1zbd_A Rabphilin-3A; G protein 37.3 30 0.001 32.5 4.5 54 3-60 71-128 (203)
145 2y8e_A RAB-protein 6, GH09086P 37.2 15 0.00052 33.4 2.3 56 4-60 78-134 (179)
146 2h57_A ADP-ribosylation factor 36.9 27 0.00093 32.5 4.1 57 4-61 82-142 (190)
147 1upt_A ARL1, ADP-ribosylation 36.6 43 0.0015 30.0 5.3 57 4-61 66-124 (171)
148 1wf3_A GTP-binding protein; GT 36.1 41 0.0014 35.0 5.7 55 4-60 78-132 (301)
149 1zd9_A ADP-ribosylation factor 35.9 49 0.0017 30.7 5.8 56 4-60 82-139 (188)
150 2efe_B Small GTP-binding prote 35.7 33 0.0011 31.2 4.4 54 4-61 76-133 (181)
151 4dcu_A GTP-binding protein ENG 35.1 61 0.0021 35.5 7.2 52 8-63 273-324 (456)
152 1z0j_A RAB-22, RAS-related pro 35.0 34 0.0012 30.7 4.3 55 4-60 70-126 (170)
153 1ek0_A Protein (GTP-binding pr 34.7 33 0.0011 30.6 4.2 54 3-60 66-123 (170)
154 1r8s_A ADP-ribosylation factor 34.7 60 0.0021 28.9 5.9 57 3-60 58-116 (164)
155 2ce2_X GTPase HRAS; signaling 34.3 19 0.00064 32.0 2.4 54 3-60 65-123 (166)
156 1puj_A YLQF, conserved hypothe 33.8 50 0.0017 34.0 5.8 62 4-73 15-76 (282)
157 2oil_A CATX-8, RAS-related pro 33.6 31 0.001 32.2 3.9 53 4-60 89-145 (193)
158 1ksh_A ARF-like protein 2; sma 33.3 28 0.00095 32.2 3.5 56 4-60 77-134 (186)
159 2fn4_A P23, RAS-related protei 31.8 28 0.00097 31.6 3.2 53 4-60 72-129 (181)
160 2qu8_A Putative nucleolar GTP- 31.6 37 0.0013 32.9 4.2 54 6-60 102-157 (228)
161 2p5s_A RAS and EF-hand domain 31.2 28 0.00094 32.9 3.1 56 3-59 91-147 (199)
162 2a5j_A RAS-related protein RAB 31.2 27 0.00094 32.6 3.1 55 5-60 86-141 (191)
163 1wb1_A Translation elongation 31.1 61 0.0021 36.1 6.3 52 5-60 89-140 (482)
164 3a1s_A Iron(II) transport prot 31.0 30 0.001 35.0 3.5 52 2-59 71-124 (258)
165 1zun_B Sulfate adenylate trans 30.6 1E+02 0.0035 33.5 8.0 52 5-60 120-172 (434)
166 2xtp_A GTPase IMAP family memb 30.1 38 0.0013 33.6 4.1 53 6-60 99-154 (260)
167 1ky3_A GTP-binding protein YPT 29.5 43 0.0015 30.4 4.0 53 4-60 73-133 (182)
168 2fh5_B SR-beta, signal recogni 29.4 41 0.0014 31.9 4.0 53 5-61 71-131 (214)
169 1c1y_A RAS-related protein RAP 29.4 51 0.0018 29.3 4.5 56 4-60 66-123 (167)
170 3tr5_A RF-3, peptide chain rel 29.4 1E+02 0.0035 34.8 7.9 66 4-73 97-163 (528)
171 1zj6_A ADP-ribosylation factor 29.3 65 0.0022 29.7 5.3 56 4-60 75-132 (187)
172 2yv5_A YJEQ protein; hydrolase 29.3 22 0.00075 37.0 2.2 52 5-61 72-126 (302)
173 2hjg_A GTP-binding protein ENG 29.2 50 0.0017 36.0 5.2 51 8-62 253-303 (436)
174 3kkq_A RAS-related protein M-R 29.2 39 0.0013 31.0 3.7 55 4-59 81-137 (183)
175 1z08_A RAS-related protein RAB 28.7 20 0.00068 32.3 1.5 53 4-60 70-126 (170)
176 1wms_A RAB-9, RAB9, RAS-relate 28.6 50 0.0017 29.9 4.3 57 3-60 70-131 (177)
177 2h17_A ADP-ribosylation factor 28.3 54 0.0018 30.2 4.5 56 4-60 80-137 (181)
178 4djt_A GTP-binding nuclear pro 28.3 32 0.0011 32.8 3.1 52 5-60 77-132 (218)
179 2ew1_A RAS-related protein RAB 28.1 43 0.0015 32.1 3.9 54 3-60 89-146 (201)
180 3ec1_A YQEH GTPase; atnos1, at 28.1 22 0.00074 38.3 1.9 52 4-61 63-114 (369)
181 3cph_A RAS-related protein SEC 27.8 31 0.0011 32.6 2.8 54 5-59 85-139 (213)
182 4dsu_A GTPase KRAS, isoform 2B 27.8 54 0.0019 29.9 4.4 54 4-61 67-125 (189)
183 1x3s_A RAS-related protein RAB 27.6 52 0.0018 30.3 4.3 53 4-60 79-136 (195)
184 2h5e_A Peptide chain release f 27.1 1E+02 0.0035 34.8 7.4 66 4-73 97-163 (529)
185 1kk1_A EIF2gamma; initiation o 27.1 86 0.0029 33.8 6.5 66 6-74 100-168 (410)
186 2nzj_A GTP-binding protein REM 26.9 52 0.0018 29.6 4.1 55 4-59 69-125 (175)
187 1nrj_B SR-beta, signal recogni 26.7 49 0.0017 31.5 4.0 57 4-61 70-136 (218)
188 2bcg_Y Protein YP2, GTP-bindin 26.3 61 0.0021 30.5 4.6 52 5-60 73-128 (206)
189 1moz_A ARL1, ADP-ribosylation 25.9 43 0.0015 30.6 3.4 56 4-60 77-134 (183)
190 1s0u_A EIF-2-gamma, translatio 25.8 1.5E+02 0.0052 31.8 8.2 64 7-73 99-165 (408)
191 3clv_A RAB5 protein, putative; 25.6 61 0.0021 29.7 4.4 47 4-56 108-158 (208)
192 1h65_A Chloroplast outer envel 25.6 64 0.0022 32.4 4.9 55 5-61 110-170 (270)
193 3q72_A GTP-binding protein RAD 25.5 49 0.0017 29.5 3.6 56 4-60 64-121 (166)
194 3con_A GTPase NRAS; structural 25.0 50 0.0017 30.5 3.7 52 4-59 84-140 (190)
195 2c78_A Elongation factor TU-A; 24.9 76 0.0026 34.1 5.5 51 5-59 91-142 (405)
196 3cnl_A YLQF, putative uncharac 24.1 29 0.00099 35.4 1.9 60 4-73 13-72 (262)
197 1g16_A RAS-related protein SEC 23.9 33 0.0011 30.8 2.1 51 5-59 68-122 (170)
198 3l0i_B RAS-related protein RAB 23.8 44 0.0015 31.4 3.0 52 5-60 98-153 (199)
199 3t5g_A GTP-binding protein RHE 23.8 77 0.0026 28.8 4.7 52 5-60 70-126 (181)
200 2gj8_A MNME, tRNA modification 23.7 41 0.0014 31.1 2.8 52 7-59 78-129 (172)
201 1z2a_A RAS-related protein RAB 23.7 27 0.00093 31.2 1.5 54 4-60 69-124 (168)
202 3p26_A Elongation factor 1 alp 23.7 1.3E+02 0.0043 33.3 7.2 55 4-60 126-186 (483)
203 2erx_A GTP-binding protein DI- 23.5 28 0.00096 31.2 1.5 56 3-60 65-124 (172)
204 2x77_A ADP-ribosylation factor 23.5 76 0.0026 29.2 4.6 55 5-60 82-138 (189)
205 1fzq_A ADP-ribosylation factor 23.4 1.2E+02 0.004 28.0 5.9 54 4-61 75-133 (181)
206 2o52_A RAS-related protein RAB 23.3 36 0.0012 32.2 2.3 55 5-60 90-145 (200)
207 2fu5_C RAS-related protein RAB 23.2 42 0.0014 30.7 2.7 52 5-60 73-128 (183)
208 2b6h_A ADP-ribosylation factor 22.9 53 0.0018 30.8 3.4 56 4-60 88-145 (192)
209 3lxx_A GTPase IMAP family memb 22.9 44 0.0015 32.7 2.9 53 6-60 106-160 (239)
210 3def_A T7I23.11 protein; chlor 22.7 1E+02 0.0035 30.8 5.7 53 6-60 108-166 (262)
211 1d2e_A Elongation factor TU (E 22.7 97 0.0033 33.3 5.8 51 5-59 82-133 (397)
212 3sjy_A Translation initiation 22.4 94 0.0032 33.4 5.7 55 5-61 91-145 (403)
213 1mh1_A RAC1; GTP-binding, GTPa 22.3 25 0.00087 32.1 1.0 56 4-61 68-125 (186)
214 2atx_A Small GTP binding prote 22.2 62 0.0021 30.0 3.7 55 4-61 81-138 (194)
215 3k4t_A Virion-associated prote 22.2 3.6E+02 0.012 23.5 8.0 56 147-203 5-60 (95)
216 3oes_A GTPase rhebl1; small GT 21.5 52 0.0018 30.9 3.1 52 5-60 88-144 (201)
217 1r2q_A RAS-related protein RAB 21.1 83 0.0029 27.9 4.2 56 4-60 70-126 (170)
218 2xex_A Elongation factor G; GT 20.7 1.3E+02 0.0045 35.0 6.8 66 4-73 90-156 (693)
219 3dm5_A SRP54, signal recogniti 20.6 59 0.002 36.1 3.6 48 12-65 212-259 (443)
220 2qag_B Septin-6, protein NEDD5 20.3 69 0.0024 35.4 4.1 42 15-60 150-191 (427)
221 2rdo_7 EF-G, elongation factor 20.2 1.5E+02 0.0051 34.7 7.1 65 4-72 97-162 (704)
No 1
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.6e-99 Score=892.04 Aligned_cols=563 Identities=22% Similarity=0.355 Sum_probs=473.5
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
.+|+..|+.++..|||+|++|+. ++.+++.+.+++++++.|.+||+||||+|++++++.. .+++.++. +++
T Consensus 177 ~~lv~~yi~~~aDlIL~VVDAs~--~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~----~~il~~~~~~l~-- 248 (772)
T 3zvr_A 177 RDMLMQFVTKENCLILAVSPANS--DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA----RDVLENKLLPLR-- 248 (772)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTS--CSSSCHHHHHHHHHCTTCSSEEEEEECTTSSCTTCCS----HHHHTTCSSCCS--
T ss_pred HHHHHHHHhcCCcEEEEEEcCCC--CcchhHHHHHHHHHHhcCCCEEEEEeCcccCCcchhh----HHHHHHHhhhhh--
Confidence 46899999999999999999997 9999999999999999999999999999999987754 34777766 776
Q ss_pred CCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGL 160 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I 160 (758)
+||+.|+++| +.+ ..+-..+.++...|++||..+| |....+++|+..|++.|++.|..||+++||.|+.+|
T Consensus 249 -lg~~~VV~iS------A~~-G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~~I 320 (772)
T 3zvr_A 249 -RGYIGVVNRS------QKD-IDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 320 (772)
T ss_dssp -SCEEECCCCC------CEE-SSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCceEEec------ccc-cccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHHHH
Confidence 7999999999 444 4566789999999999999998 666678999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCC--------CCcchHHHHHhcchhhhhccCCCC
Q 004370 161 QGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGE--------GNGWKVVASFEGNFPNRMKQLPLD 232 (758)
Q Consensus 161 ~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~--------~gGarI~~if~e~F~~~i~~lp~~ 232 (758)
+.++..++.||++||+++++++..+..+|+++|++|++.|.++|+|++ +||+||+++||+.|+..+.+++++
T Consensus 321 ~~~l~s~~vele~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~~~ 400 (772)
T 3zvr_A 321 QSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKMEFD 400 (772)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCCCc
Confidence 999999999999999998877666677899999999999999999998 589999999999999999999999
Q ss_pred cccChhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHH
Q 004370 233 RHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREVV 312 (758)
Q Consensus 233 ~~~~~~~Vr~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i~ 312 (758)
+.++.++|+++|+|++|++|++|+|+.+|+.||++||++|++||++|||.|+++|.+++.+|. .+|.|||+|+++|.
T Consensus 401 ~~~~~~~I~~~i~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdlV~~eL~~iv~~~~---~~l~RfP~Lr~ei~ 477 (772)
T 3zvr_A 401 EKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDMVVSELTSTIRKCS---EKLQQYPRLREEME 477 (772)
T ss_dssp HHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHG---GGGTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999984 68999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchh--hHHHHHHHHhhHHHHHhhhhhhhhhHHHhhhhccCCCCCCCCCCC
Q 004370 313 EIASAALDRFKSDAKKMVVALVDMERVFVPPQH--FIRLVQRRQRREEEQKYRSSKKAADAEQSILNRATSPQTGGPESG 390 (758)
Q Consensus 313 ~iv~~~L~~~~~~a~~~v~~Lid~E~~yi~tnh--F~~~~q~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 390 (758)
+++.++|++++.+|+++|..|||||++|||||| |+++.++.++..+..+ + .
T Consensus 478 ~iv~~~Lre~~~~t~~~V~~LId~E~ayintnHpdf~~~~~~~~~~~~~~~-----~------------~---------- 530 (772)
T 3zvr_A 478 RIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFIGFANAQQRSNQMNK-----K------------K---------- 530 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCTTCCCC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhhchHHHHHHHHHHhh-----c------------c----------
Confidence 999999999999999999999999999999999 9998776433322111 0 0
Q ss_pred CCcccccCCCCCCccccccCCCcc----cCCCCCccccchhhcc--cCCCCCcccceeeeecCCcccccccchhhhhccc
Q 004370 391 GSLKSMKDKSSPQDKDVQEGSTLK----TAGPGGEITAGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRG 464 (758)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~i~~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG 464 (758)
..+|| | +++|||... |+++++-|.+||||+.++ |.|||+++++..++
T Consensus 531 -------------------~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 583 (772)
T 3zvr_A 531 -------------------TSGNQDEILV------IRKGWLTINNIGIMKGGSKEYWFVLTAEN--LSWYKDDEEKEKKY 583 (772)
T ss_dssp --------------------------CCE------EEEEEEEESSSCCC---CCEEEEEEESSE--EEEESSTTCCCEEE
T ss_pred -------------------cccCCccccc------eeeeeeeecccccccCCCccceeeccccc--cccccchhhhcccc
Confidence 12344 5 999999986 677899999999999987 99999999999999
Q ss_pred eeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh-HHHHhhcC
Q 004370 465 VVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL-RVVIQARG 543 (758)
Q Consensus 465 ~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai-Ra~i~~~~ 543 (758)
+++|+++++++++.+++ + +.++|.|++++ .+||||+|++++|+|+|+++++.|++++ ||+|||++
T Consensus 584 ~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 649 (772)
T 3zvr_A 584 MLSVDNLKLRDVEKGFM--S-----------SKHIFALFNTE-QRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER 649 (772)
T ss_dssp EEECTTEEEEEC--------------------CEEEEEEETT-SSCSBTTBSEEEEEESSHHHHHHHHHHHHHTTCCBC-
T ss_pred cccccccccchhhhccc--c-----------ccccccccCCc-cccccchhhhhhhhccccccchhhHHhhhhcccCCcc
Confidence 99999999999998863 3 56899999998 7899999999999999999999999998 99999965
Q ss_pred Cccc---cCCCCCCccCCCCCCCCcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHH----HHH
Q 004370 544 GDVR---RDSIHPMRQSHSDGSLDTMARKPADPEEELRWMAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKE----DML 616 (758)
Q Consensus 544 ~~~~---~~~~~~~~~~~~~~slDpq~~~~~~~~~~~~~i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~----~Ll 616 (758)
+... .+++++ .......|||||++|| +++|++||+|||+||+|||+|+|||||||+|||++|+ +||
T Consensus 650 ~~~~~~~~~~~~~-~~~~~~~~~~~q~~~q------~e~~~~l~~sy~~iv~k~~~d~~pk~im~~~vn~~k~~~~~el~ 722 (772)
T 3zvr_A 650 VGDKEKASETEEN-GSDSFMHSMDPQLERQ------VETIRNLVDSYMAIVNKTVRDLMPKTIMHLMINNTKEFIFSELL 722 (772)
T ss_dssp ------------------------CHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTHH
T ss_pred ccccccccccCCc-cccccccCCCHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4321 010111 2334566999999997 9999999999999999999999999999999999997 899
Q ss_pred HHHHhhhhhccHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004370 617 NQLYSSISAQSTERIGELLQEDKNAKSRRELCQKQSTLLSKLIRQLGVH 665 (758)
Q Consensus 617 ~~LY~~~~~~~~~~~~~Ll~E~~~~~~rR~~~~~~~~~l~~~~~~l~~~ 665 (758)
.+||++++ +++||+|||++++||++|++||++|++|.++++-.
T Consensus 723 ~~ly~~~~------~~~lm~Es~~~~~~r~~~~~~~~~l~~a~~ii~~i 765 (772)
T 3zvr_A 723 ANLYSCGD------QNTLMEESAEQAQRRDEMLRMYHALKEALSIIGDI 765 (772)
T ss_dssp HHHHHTCC------TTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHhcccC------HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999985 88999999999999999999999999998887643
No 2
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=1.3e-67 Score=613.05 Aligned_cols=421 Identities=15% Similarity=0.236 Sum_probs=366.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
.+|+.+|+.++++|||+|++++. |+++++++++|+++||.|.||||||||+|++++|+.. .+.+++.|+. +++
T Consensus 174 ~~li~~~l~~~~~iil~vvt~~~--d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~--~~~~~l~~~~~~l~-- 247 (608)
T 3szr_A 174 KTLIKKYIQRQETISLVVVPSNV--DIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTED--KVVDVVRNLVFHLK-- 247 (608)
T ss_dssp HHHHHHHTTSSSCCEEEEEESSS--CTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTT--CCCCCC--CCSCCS--
T ss_pred HHHHHHHHhcCCCCceEEEeccc--hhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHH--HHHHHHhCcccccC--
Confidence 47999999999999999999996 9999999999999999999999999999999999863 3677899998 888
Q ss_pred CCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcCC-CCC--CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLLS-GAP--QNKLGRVALVDTIAGQIRNRMSLRVPKLLS 158 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~~-~~~--~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~ 158 (758)
+|||+|+||+ |+| ++.+.++.+|++.|.+||.+||| +.. .+++||++|+++|+++|.+||+++||.|+.
T Consensus 248 -~g~~~v~nr~------~~~-~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP~l~~ 319 (608)
T 3szr_A 248 -KGYMIVKCRG------QQE-IQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLPLLEN 319 (608)
T ss_dssp -SCEECCCCSC------TTC-TTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ceEEEEecCc------hhh-cccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7999999999 666 99999999999999999999995 432 469999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHhhcCCCCC---cchHHHHHhcchhhhhccCCC----
Q 004370 159 GLQGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQHITGGEGN---GWKVVASFEGNFPNRMKQLPL---- 231 (758)
Q Consensus 159 ~I~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~I~G~~~g---GarI~~if~e~F~~~i~~lp~---- 231 (758)
+|+.+|..++.||.+||+++++++..++.+|++++++|++.|+++|+|.+.. +.++...+++.|..+...+..
T Consensus 320 ~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 399 (608)
T 3szr_A 320 QIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQE 399 (608)
T ss_dssp HHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999988888889999999999999999999999742 267777777777665544311
Q ss_pred CcccChhhHHHHHHhhcCCCCCCCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHH
Q 004370 232 DRHFDMKNVKRVVLEADGYQPYLISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREV 311 (758)
Q Consensus 232 ~~~~~~~~Vr~~I~~~~G~~~~lf~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i 311 (758)
......++|++++++++|+++|+|+|+.+|+.||++||++|++||.+||+.|++++..++.+++. ++|.+||+|++++
T Consensus 400 ~~~~~~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~V~~~v~~~~~~~~~--~~f~rfp~L~~~~ 477 (608)
T 3szr_A 400 GHKILSRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTA 477 (608)
T ss_dssp HHHHHHHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHH
Confidence 11122488999999999999999999999999999999999999999999999999999999875 7899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHhhHHHHHhhhhhhhhhHHHhhhhccCCCCCCCCCCCC
Q 004370 312 VEIASAALDRFKSDAKKMVVALVDMERVFVPPQHFIRLVQRRQRREEEQKYRSSKKAADAEQSILNRATSPQTGGPESGG 391 (758)
Q Consensus 312 ~~iv~~~L~~~~~~a~~~v~~Lid~E~~yi~tnhF~~~~q~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 391 (758)
.+++.+++++++.+|+++|..||+||+.|++-+++.
T Consensus 478 ~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d~~~-------------------------------------------- 513 (608)
T 3szr_A 478 KSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQSS-------------------------------------------- 513 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccc--------------------------------------------
Confidence 999999999999999999999999999763211100
Q ss_pred CcccccCCCCCCccccccCCCcccCCCCCccccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcc
Q 004370 392 SLKSMKDKSSPQDKDVQEGSTLKTAGPGGEITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC 471 (758)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~ 471 (758)
.
T Consensus 514 --------------------------------------------------------------~----------------- 514 (608)
T 3szr_A 514 --------------------------------------------------------------S----------------- 514 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred ccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhhcCCccccCCC
Q 004370 472 YIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQARGGDVRRDSI 551 (758)
Q Consensus 472 ~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~~~~~~~~~~~ 551 (758)
.. . .
T Consensus 515 ------~~--------------------------~----------------------------------~---------- 518 (608)
T 3szr_A 515 ------AT--------------------------D----------------------------------S---------- 518 (608)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------CC--------------------------C----------------------------------c----------
Confidence 00 0 0
Q ss_pred CCCccCCCCCCCCcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhhhccHHHH
Q 004370 552 HPMRQSHSDGSLDTMARKPADPEEELRWMAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTERI 631 (758)
Q Consensus 552 ~~~~~~~~~~slDpq~~~~~~~~~~~~~i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~~Ll~~LY~~~~~~~~~~~ 631 (758)
+ +..|+++|+|||+||+++|+|+|||+||||||+.+++.|..+||..+. ..+.+
T Consensus 519 ----------~--------------~~ei~~~l~sY~~iv~~~~~D~vP~~I~~~lv~~~~~~lq~~l~~~l~--~~~~~ 572 (608)
T 3szr_A 519 ----------S--------------MEEIFQHLMAYHQEASKRISSHIPLIIQFFMLQTYGQQLQKAMLQLLQ--DKDTY 572 (608)
T ss_dssp ----------C--------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTT--CHHHH
T ss_pred ----------c--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh--cchhH
Confidence 0 122779999999999999999999999999999999999999888885 45689
Q ss_pred HHhhhcCHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004370 632 GELLQEDKNAKSRRELCQKQSTLLSKLIRQLGV 664 (758)
Q Consensus 632 ~~Ll~E~~~~~~rR~~~~~~~~~l~~~~~~l~~ 664 (758)
+.||+|||++++||++|.+|+++|++|.+.|+-
T Consensus 573 ~~ll~E~~~~~~~R~~l~~~~~~L~~A~~~l~~ 605 (608)
T 3szr_A 573 SWLLKERSDTSDKRKFLKERLARLTQARRRLAQ 605 (608)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998863
No 3
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=273.14 Aligned_cols=164 Identities=9% Similarity=0.130 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCC---CCcchHHHHHhcchhhhhccCCCCcccC----hhhHHHHHHhhcCCCCCC
Q 004370 182 TEGTKALALQLCREFEDKFLQHITGGE---GNGWKVVASFEGNFPNRMKQLPLDRHFD----MKNVKRVVLEADGYQPYL 254 (758)
Q Consensus 182 ~e~~~~~ll~li~~F~~~f~~~I~G~~---~gGarI~~if~e~F~~~i~~lp~~~~~~----~~~Vr~~I~~~~G~~~~l 254 (758)
+.++..||+..++.|.+.+..++.|.+ .||.||+..+.+.|..|...++...... .++|.+..++++|+++|+
T Consensus 3 ~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELPg 82 (271)
T 3ljb_A 3 ENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELPG 82 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccCC
Confidence 345678999999999999999999987 4678999999999999877664321111 267778888999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 255 ISPEKGLRSLIKSVLEMAKEPSRLCVDEVHRVLVDIVSAAANATPGLGRYPPFKREVVEIASAALDRFKSDAKKMVVALV 334 (758)
Q Consensus 255 f~P~~afe~Lik~qi~~~~~Pa~~cvd~V~~~L~~iv~~~~~~t~~l~rfP~L~~~i~~iv~~~L~~~~~~a~~~v~~Li 334 (758)
|+|+.+||.||++||++|++||++|++.|+++|.+++.+++. .+|++||.|++.+..+|.+++.++..+|+++|..+|
T Consensus 83 Fv~y~aFE~lVk~qI~~LeePAl~cl~~V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~Ae~~I~~~~ 160 (271)
T 3ljb_A 83 FVNYRTFETIVKQQIKALEEPAVDMLHTVTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHF 160 (271)
T ss_dssp CTTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986 799999999999999999999999999999999999
Q ss_pred HHhcCCCCchh--hHH
Q 004370 335 DMERVFVPPQH--FIR 348 (758)
Q Consensus 335 d~E~~yi~tnh--F~~ 348 (758)
+||+ +++|+| |..
T Consensus 161 ~mE~-~vytqD~~Y~~ 175 (271)
T 3ljb_A 161 QMEQ-IVYCQDQVYRG 175 (271)
T ss_dssp HHHT-SCC--------
T ss_pred HHhc-ccccCCHHHHH
Confidence 9999 788988 554
No 4
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.93 E-value=1.9e-27 Score=220.91 Aligned_cols=106 Identities=22% Similarity=0.343 Sum_probs=96.1
Q ss_pred cccchhhcc--cCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+++|||+|+ |.++++||+|||||++++ |+|||+++|++++|+|+|+++.|.+++++++ .++|+
T Consensus 13 irkGWL~k~~~g~~k~~wk~rWFVLt~~~--L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~-------------~rk~~ 77 (125)
T 1dyn_A 13 IRKGWLTINNIGIMKGGSKEYWFVLTAEN--LSWYKDDEEKEKKYMLSVDNLKLRDVEKGFM-------------SSKHI 77 (125)
T ss_dssp EEEEEEEESCCCGGGTSSEEEEEEEESSE--EEEESSTTCSCEEEEEECTTEEEEECCSCSS-------------SSCEE
T ss_pred EEEEEEEEecCccccCCceeeEEEEeccc--eeeecCCcccccceEEECCCceEeccCCCCC-------------CCceE
Confidence 999999996 555667999999999986 9999999999999999999999999886532 26899
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhh-HHHHhhcC
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKL-RVVIQARG 543 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~ai-Ra~i~~~~ 543 (758)
|.|.+++ .++|+|+|++|+|+|+|++|+++|+++| ||+|+|++
T Consensus 78 F~l~~~d-~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~v~p~~ 121 (125)
T 1dyn_A 78 FALFNTE-QRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER 121 (125)
T ss_dssp EEEEETT-SSCSSTTCSSEEEEESSHHHHHHHHHHHHHTTCEECC
T ss_pred EEEECCC-CccccccceEEEEeCCCHHHHHHHHHHHHhCccCcCc
Confidence 9999997 6899999999999999999999999999 99999944
No 5
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.90 E-value=1.6e-24 Score=235.58 Aligned_cols=165 Identities=26% Similarity=0.467 Sum_probs=140.9
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
.+++..|+.++++|||+|.+++. |..+++.+++++++++.|.|||+|+||+|++++++.. .+++.+.. +++
T Consensus 163 ~~~~~~~i~~~d~iilvv~~~~~--~~~~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~----~~~~~~~~~~~~-- 234 (360)
T 3t34_A 163 ENMVRSYIEKPNCIILAISPANQ--DLATSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDA----VEILEGRSFKLK-- 234 (360)
T ss_dssp HHHHHHHHHSSSEEEEEEEETTS--CGGGCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCS----HHHHTTSSSCCS--
T ss_pred HHHHHHHhhcCCeEEEEeecccC--CcCCHHHHHHHHHhcccCCCEEEEEeCCccCCCcccH----HHHHcCcccccc--
Confidence 67899999999999999999997 9999999999999999999999999999999987764 45788776 776
Q ss_pred CCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGL 160 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I 160 (758)
+||++|.|++ +.+ ++...++.+++..|.+||.++| |.....++|+.+|+++|+++|.+||+++||.|+.+|
T Consensus 235 -~~~~~v~~~s------~~~-i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~~i 306 (360)
T 3t34_A 235 -YPWVGVVNRS------QAD-INKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQSLI 306 (360)
T ss_dssp -SCCEEECCCC------HHH-HHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHHHH
T ss_pred -CCeEEEEECC------hHH-hccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8999999999 556 8899999999999999999998 666678999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHcCCCCCCChH
Q 004370 161 QGKSQIVQDELLKLGDQILENTE 183 (758)
Q Consensus 161 ~~~l~~~e~eL~~LG~~~~~~~e 183 (758)
+.++.++++||.+||++++++..
T Consensus 307 ~~~l~~~~~~l~~lg~~~~~~~~ 329 (360)
T 3t34_A 307 NKTVLELETELSRLGKPIAHGTD 329 (360)
T ss_dssp HHHHTTTTCC-------------
T ss_pred HHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999999999999986553
No 6
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.89 E-value=6.4e-23 Score=222.70 Aligned_cols=184 Identities=21% Similarity=0.345 Sum_probs=162.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
++|+..|+.++++|||+|++|+. |+++++++++++++||.|.|||+|+||+|+++++++. .+++.++. +++
T Consensus 157 ~~~~~~~~~~~~~iiL~v~~a~~--~~~~~~~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~----~~~~~~~~~~l~-- 228 (353)
T 2x2e_A 157 RDMLMQFVTKENCLILAVSPANS--DLANSDALKVAKEVDPQGQRTIGVITKLDLMDEGTDA----RDVLENKLLPLR-- 228 (353)
T ss_dssp HHHHHHHHTSTTEEEEEEEETTS--CGGGCHHHHHHHHHCTTCTTEEEEEECGGGSCTTCCC----HHHHTTCSSCCT--
T ss_pred HHHHHHHHcCCCeEEEEEecCCC--ccchhHHHHHHHHhCcCCCceEEEeccccccCcchhH----HHHHhCCccccc--
Confidence 46999999999999999999997 9999999999999999999999999999999887643 35777776 776
Q ss_pred CCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGL 160 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I 160 (758)
+||+.|+++| +.+ ..+-..+.++...|..||.+++ |.....++|+..|++.|++.|..||+++||.|+.+|
T Consensus 229 -~~~~~v~~~S------A~~-~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~~~i 300 (353)
T 2x2e_A 229 -RGYIGVVNRS------QKD-IDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 300 (353)
T ss_dssp -TCEEECCCCC------HHH-HHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEeCC------ccc-ccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999 444 4566788899999999999886 766678999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHcCCCCCCChHHH--HHHHHHHHHHHHHHHHH
Q 004370 161 QGKSQIVQDELLKLGDQILENTEGT--KALALQLCREFEDKFLQ 202 (758)
Q Consensus 161 ~~~l~~~e~eL~~LG~~~~~~~e~~--~~~ll~li~~F~~~f~~ 202 (758)
+.++..++.+|++||+.+++++..+ +.+|+++|++|++.|..
T Consensus 301 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 301 QSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999887665433 48999999999999964
No 7
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.75 E-value=4.3e-19 Score=166.26 Aligned_cols=96 Identities=13% Similarity=0.293 Sum_probs=81.0
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCccccccc----chhhhhccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTK----KQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK----~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
.++|||.|+|+ ..++||||||||.+++ |+||| ++.+.+|.|+|+|++|+|+.++.... ..++
T Consensus 9 ~~~G~L~KqG~~~~K~WKrRwFVL~~~~--LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~-----------~~~~ 75 (126)
T 1wi1_A 9 KHSGYLWAIGKNVWKRWKKRFFVLVQVS--QYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPG-----------LEGG 75 (126)
T ss_dssp EEEEEEEEECSSSCCSCEEEEEEEEEEE--TTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSS-----------CCSC
T ss_pred ceeEEEEEeCCCcccccceEEEEEeCCE--EEEEEcccccccCCCCceEEECCCcEEEEecCCcc-----------cccC
Confidence 89999999987 4589999999999885 99999 99999999999999999976543210 0236
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
.+.|+|.++. ++|+|.|+|++||+.||.+|..++
T Consensus 76 k~~F~~v~~~---------~ty~~~Adseee~~~WikAi~~A~ 109 (126)
T 1wi1_A 76 RAFFNAVKEG---------DTVIFASDDEQDRILWVQAMYRAT 109 (126)
T ss_dssp SSEEEEECSS---------CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCC---------ceEEEEcCCHHHHHHHHHHHHHHh
Confidence 7899998874 679999999999999999995555
No 8
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.74 E-value=7.1e-19 Score=165.93 Aligned_cols=101 Identities=24% Similarity=0.438 Sum_probs=81.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+| ..++|++|||||.+. .|+|||++++..++|.|+|++|.|.+.+. .+..++|.
T Consensus 9 ~k~GwL~K~g-~~k~WkrRWfVLk~~--~L~yyk~~~~~~p~G~I~L~~~~v~~~~~---------------~~~~~~F~ 70 (130)
T 1v88_A 9 VMADWLKIRG-TLKSWTKLWCVLKPG--VLLIYKTQKNGQWVGTVLLNACEIIERPS---------------KKDGFCFK 70 (130)
T ss_dssp CEEEEEEECC-SSSSCEEEEEEEETT--EEEEESCSSSCCCCEEEECSSCEECCCCT---------------TTSSCEEE
T ss_pred EEEeEEEEeC-CCCCceEEEEEEECC--EEEEECCCCCCCceEEEEcCCCEEEECCC---------------CCCCeEEE
Confidence 8999999999 778999999999975 59999999999999999999999854321 12568999
Q ss_pred EeccCcchh---------------hhh-hhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKT---------------VLK-AHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~---------------v~k-~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.++.. +. +.. ..+.|+|+|+|++|+++|+.+|+.++..
T Consensus 71 i~~~~~-~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~ 125 (130)
T 1v88_A 71 LFHPLE-QSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS 125 (130)
T ss_dssp EECTTC-CCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred EEcCCc-cccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 998641 10 000 0245899999999999999999988864
No 9
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.73 E-value=2.1e-18 Score=166.55 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=82.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..++||+|||||+++. |+|||++.+..+.|.|+|.++.+...+.. .++..++|.
T Consensus 19 ~keG~L~Kkg~~~k~WkrRWFvLk~~~--L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~-------------~~~~~~~F~ 83 (149)
T 1x1f_A 19 YFEGFLLIKRSGYREYEHYWTELRGTT--LFFYTDKKSIIYVDKLDIVDLTCLTEQNS-------------TEKNCAKFT 83 (149)
T ss_dssp EEEEEEEEECTTCCSCEEEEEEEETTE--EEEESCSSCSSCSEECCCSSCCEEEECCC-------------TTSCCCEEE
T ss_pred cEEEEEEEeCCCCCCceeEEEEEcCCE--EEEEeCCCccccCcEEECCCceEEeeccC-------------CCCcCcEEE
Confidence 999999999999999999999999874 99999999999999999999876422211 112468999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++ ++|+|+|+|.+|+++|+.+|++++.-
T Consensus 84 I~t~~---------r~~~f~A~s~ee~~eWi~aI~~v~~~ 114 (149)
T 1x1f_A 84 LVLPK---------EEVQLKTENTESGEEWRGFILTVTEL 114 (149)
T ss_dssp EECSS---------CCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred EEcCC---------CEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence 99985 89999999999999999999998874
No 10
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.72 E-value=2.4e-18 Score=155.15 Aligned_cols=96 Identities=18% Similarity=0.328 Sum_probs=83.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|...+.|++|||||++. .|+||+++++..++|.|+|.+|.+....+. .+..++|.
T Consensus 9 ~~~G~L~K~~~~~~~Wk~RwfvL~~~--~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~--------------~~~~~~F~ 72 (109)
T 1wgq_A 9 TMSGYLYRSKGSKKPWKHLWFVIKNK--VLYTYAASEDVAALESQPLLGFTVTLVKDE--------------NSESKVFQ 72 (109)
T ss_dssp SCEEEEEEESSTTSCCEEEEEEEETT--EEEEESCTTCSSCSEEEECSSEEEEECCCS--------------SCSSSEEE
T ss_pred eEEEEEEeCCCCCCCceeEEEEEeCC--EEEEECCCCcCccCceEECCCCEEEECCCC--------------CCCCcEEE
Confidence 88999999998889999999999975 599999999999999999999987654321 12568999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.++. .++|+|+|+|.+|++.|+.+|+.++.+
T Consensus 73 i~~~~--------~~~~~~~a~s~~e~~~Wi~al~~a~~~ 104 (109)
T 1wgq_A 73 LLHKG--------MVFYVFKADDAHSTQRWIDAFQEGTVS 104 (109)
T ss_dssp EEETT--------EEEEEEECSSHHHHHHHHHHHHHHHSC
T ss_pred EEeCC--------CeEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 98764 578999999999999999999998875
No 11
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.72 E-value=4.6e-18 Score=157.58 Aligned_cols=103 Identities=22% Similarity=0.454 Sum_probs=86.1
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|...+.|++|||||.++.+.|+||+++.+..++|.|+|.+|.|..+..... .. ..+..++|.
T Consensus 19 ~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~--~~-------~~~~~~~F~ 89 (129)
T 1x05_A 19 IKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSN--GR-------KSEEENLFE 89 (129)
T ss_dssp EEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCC--SS-------SCSSCSEEE
T ss_pred eEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCcc--cc-------ccCCCeEEE
Confidence 899999999998899999999999864579999999999999999999998876543210 00 012678999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++ .++|+|.|+|.+|++.|+.+|+.++..
T Consensus 90 i~~~~--------~~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 90 IITAD--------EVHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp EECTT--------CCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEcCC--------CCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 99874 578999999999999999999988874
No 12
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-18 Score=158.03 Aligned_cols=95 Identities=27% Similarity=0.511 Sum_probs=82.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+++|||.|+|...++|++|||||+++.+.|+||+++.+. .++|.|+|.+|.|...+ ...+.
T Consensus 9 ~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~-----------------~~~~~ 71 (120)
T 2d9x_A 9 NVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD-----------------EDSHT 71 (120)
T ss_dssp CCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCS-----------------SSSSC
T ss_pred cEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEecC-----------------CCCCE
Confidence 899999999988899999999999754689999999875 78999999999865321 14589
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.|.+++ .|+|+|.|+|.+|++.|+.+|+.++..
T Consensus 72 F~i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 72 FTVNAAS--------GEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp EEECCSS--------SCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCC--------CCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999874 489999999999999999999988875
No 13
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.71 E-value=1.7e-18 Score=161.27 Aligned_cols=108 Identities=20% Similarity=0.402 Sum_probs=83.5
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh---hhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE---ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~---ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
+++|||.|+|...++|++|||||+++ .|+|||+++ +..|.|.|+|++|.|..+++.... ++.|+ ....+
T Consensus 7 ~k~G~L~Kk~~~~k~W~~rwfVL~~~--~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~-----~~~~~-~~~~~ 78 (120)
T 4a6h_A 7 IKSGFLERRSKFLKSYSKGYYVLTPN--FLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNST-----SSPNS-TGSDA 78 (120)
T ss_dssp SEEEEEEEEETTTTEEEEEEEEECSS--EEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------------CC
T ss_pred cEEEEEEEcCCCCCCCccEEEEEeCC--EEEEEcCCCcCcCCCceEEEECCCCEEEEccccccc-----ccccc-cCCCc
Confidence 99999999998889999999999987 599999886 566999999999999875543100 00110 02567
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
.|.|.+++ ..++...+.|+|+|+|.+|+++|+.+||.++
T Consensus 79 ~F~i~~~~--~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 79 KFVLHAKQ--NGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEEESS--SSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEEeCC--CCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88888775 2344456799999999999999999998875
No 14
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.71 E-value=2.7e-18 Score=157.85 Aligned_cols=103 Identities=26% Similarity=0.496 Sum_probs=87.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..++|++|||||.+. .|+||+++.+..++|.|+|.+|.|..+.+. +..++|.
T Consensus 6 ~~~G~L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~---------------~~~~~f~ 68 (127)
T 1fgy_A 6 DREGWLLKLGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVLDP---------------RKPNCFE 68 (127)
T ss_dssp SEEEEEEEECSSSCCEEEEEEEEETT--EEEEESSTTCSSCSEEEECTTCEEEEECCS---------------SCSSEEE
T ss_pred ceEeEEEEECCCCCCeEEEEEEEECC--EEEEeCCCCCCCcceEEECCceEEEEccCC---------------CCCceEE
Confidence 89999999998889999999999976 599999999999999999999987755432 2678999
Q ss_pred EeccCc-------------chhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVP-------------YKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~-------------~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++. ...+...+|+|+|.|+|.+|+++|+.+|+.++..
T Consensus 69 i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 121 (127)
T 1fgy_A 69 LYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR 121 (127)
T ss_dssp EECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 987741 1133445689999999999999999999998875
No 15
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.71 E-value=4.4e-18 Score=152.54 Aligned_cols=101 Identities=23% Similarity=0.456 Sum_probs=83.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..++|++|||||.++.+.|+||+++.+..++|.|+|.+|.|..+..... .. ..+..++|.
T Consensus 8 ~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~--~~-------~~~~~~~F~ 78 (109)
T 2i5f_A 8 IKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSN--GR-------KSEEENLFE 78 (109)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC-----------------CCSEEE
T ss_pred eEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcc--cc-------cCCCceEEE
Confidence 899999999998899999999999864479999999999999999999998866543210 00 012678999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
|.+++ .++|+|.|+|.+|+++|+.+|+.++
T Consensus 79 i~~~~--------~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 79 IITAD--------EVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp EECTT--------CCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEeCC--------CCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 99874 5779999999999999999998875
No 16
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=6e-18 Score=155.72 Aligned_cols=95 Identities=22% Similarity=0.439 Sum_probs=81.5
Q ss_pred cccchhhcccC--CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSS--KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~--~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+++|||.|+|+ ..+.|++|||||.++.+.|+||+++.+..++|.|+|.+|.+..... ...+.
T Consensus 9 ~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~~~----------------~~~~~ 72 (119)
T 2dhk_A 9 KLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKAD----------------AEEGI 72 (119)
T ss_dssp CCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECTT----------------GGGCE
T ss_pred cEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEecCC----------------CCCCE
Confidence 88999999986 6789999999999874469999999999999999999887653211 14579
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.|.++. |+|+|.|+|.+|++.|+.+|+.++..
T Consensus 73 F~i~~~~---------r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 73 FEIKTPS---------RVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp EEEECSS---------CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC---------cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 9999874 99999999999999999999887764
No 17
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.71 E-value=3e-18 Score=159.63 Aligned_cols=99 Identities=17% Similarity=0.405 Sum_probs=81.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh---------hccceeecCccccccccccccccCchhhhhcc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER---------HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQA 492 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek---------~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np 492 (758)
+++|||.|+|+..++|++|||||+++. |+||+++.+. .++|+|+|.+|.|..+.+..
T Consensus 13 ~k~G~L~K~g~~~k~Wk~RwfVL~~~~--L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~------------ 78 (124)
T 2w2x_D 13 KQQGELYMWDSIDQKWTRHFCAIADAK--LSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGK------------ 78 (124)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEETTE--EEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCB------------
T ss_pred ceeEEEEEECCCCCCceEeEEEEECCE--EEEEcccccccccccccCCccccEEECCCCEEEEccCCc------------
Confidence 899999999988899999999999775 9999997643 34899999999987765321
Q ss_pred cCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 493 EKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 493 ~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+++++|+|.++.. .+++|+|.|+|.+|+++|+.+||.++..
T Consensus 79 -~~k~~~F~I~~~~~------~~~~~~~~A~s~ee~~~Wi~ai~~a~~~ 120 (124)
T 2w2x_D 79 -NQKSFVFILEPKQQ------GDPPVEFATDKVEELFEWFQSIREITWK 120 (124)
T ss_dssp -TTBSEEEEEEECC--------CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred -CCCCEEEEEECCCC------CCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence 13678999998741 2578999999999999999999988764
No 18
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.71 E-value=6.7e-18 Score=155.53 Aligned_cols=97 Identities=16% Similarity=0.309 Sum_probs=80.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCC-cccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKT-GKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~s-g~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
++.|||.|++. .+.|+||||||.++. ..|+|||+++|..+.|.|+|.+|+|...++.. +..+.++|
T Consensus 9 ~~~G~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~------------~~~~~~~F 75 (112)
T 2coc_A 9 LLCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEE------------RLDSGHVW 75 (112)
T ss_dssp SSEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSS------------CCSSSEEE
T ss_pred eEEEEEEecCC-CCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCccc------------ccCCCCEE
Confidence 66799999754 788999999999752 36999999999999999999999997543221 12368999
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
+|.++ .++|+|+|+|+++++.|+.+|+.++.
T Consensus 76 ki~~~---------~~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 76 KLQWA---------KQSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp EEEET---------TEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred EEecC---------CeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 99976 38999999999999999999977665
No 19
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.70 E-value=7.9e-18 Score=152.49 Aligned_cols=105 Identities=30% Similarity=0.506 Sum_probs=86.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|...+.|++|||||.++ .|+||+++.+..++|+|+|.+|.+..+... +.....++|.
T Consensus 9 ~~~G~L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~------------~~~~~~~~f~ 74 (118)
T 1v89_A 9 IKMGWLKKQRSIVKNWQQRYFVLRAQ--QLYYYKDEEDTKPQGCMYLPGCTIKEIATN------------PEEAGKFVFE 74 (118)
T ss_dssp EEEEEEEEECSSSSCEEEEEEEEETT--EEEEESSSSCCSCSEEECSTTEEEEEECCC------------SSCCCCCEEE
T ss_pred cEEEEEEecCCCCCCccEEEEEEECC--EEEEEeCCCCCCceEEEECCCCEEEEcCcC------------cccCCcceEE
Confidence 89999999998889999999999986 599999999999999999999988755432 1123678999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.++.. ..+....++|+|.|+|.+|++.|+.+|+.++..
T Consensus 75 i~~~~~-~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 75 IIPASW-DQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp EEESCC-SSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred EECCcc-ccccCCCcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 998421 111123689999999999999999999998874
No 20
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.69 E-value=1.2e-17 Score=151.38 Aligned_cols=97 Identities=26% Similarity=0.501 Sum_probs=83.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..+.|++|||||.++. |+||+++.+..++|.|+|.+|.+...... +.+..++|.
T Consensus 6 ~~~G~L~K~g~~~~~Wk~R~fvL~~~~--L~yy~~~~~~~~~g~i~L~~~~~~~~~~~-------------~~~~~~~F~ 70 (113)
T 1pls_A 6 IREGYLVKKGSVFNTWKPMWVVLLEDG--IEFYKKKSDNSPKGMIPLKGSTLTSPCQD-------------FGKRMFVFK 70 (113)
T ss_dssp SEEEEEEEESSSSSCCEEEEEEEETTE--EEEESSTTCSSCSEEEESSSCCEESSCCS-------------SCCSSSEEE
T ss_pred cEEEEEEEeCCCCCCceEEEEEEECCE--EEEEeCCCCCCcceEEEcCCCEEEEecCC-------------CCCCccEEE
Confidence 899999999998899999999999864 99999999999999999999987542211 123678999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++ .++|+|.|+|.+|++.|+.+|+.++..
T Consensus 71 i~~~~--------~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 71 ITTTK--------QQDHFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp EEETT--------TEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEcCC--------CCEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 99874 589999999999999999999988876
No 21
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.69 E-value=1.5e-17 Score=153.94 Aligned_cols=106 Identities=22% Similarity=0.414 Sum_probs=85.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccch-hhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQ-EERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~-~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+|...+.|++|||||.++.+.|+||+++ .+..++|.|+|.+|.|..+......... ......++|
T Consensus 19 ~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~------~~~~~~~~F 92 (129)
T 1x1g_A 19 VKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGV------KGNVQGNLF 92 (129)
T ss_dssp EEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSC------SSCCCSSCE
T ss_pred EEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcccc------cCCCCCceE
Confidence 899999999988999999999999654579999998 7889999999999988766543100000 001157899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.+++ .++|+|.|+|.+|+++|+.+|+.++..
T Consensus 93 ~I~~~~--------~r~~~l~a~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 93 KVITKD--------DTHYYIQASSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp EECCTT--------CCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred EEEcCC--------CCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 999874 578999999999999999999988864
No 22
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.4e-17 Score=149.15 Aligned_cols=95 Identities=22% Similarity=0.560 Sum_probs=81.6
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcc-ccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC-YIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~-~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+|...+.|++|||||.+. .|+||+++.+..++|.|+|.++ .|+.+++. .+..++|
T Consensus 9 ~~~G~L~K~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~--------------~~~~~~F 72 (115)
T 2dn6_A 9 LKQGYMMKKGHRRKNWTERWFVLKPN--IISYYVSEDLKDKKGDILLDENCCVESLPDK--------------DGKKCLF 72 (115)
T ss_dssp SEEEEEEEECTTSSCEEEEEEEECSS--CEEEESSTTCSSEEEEECCCTTCEEEEECCC--------------TTCCSEE
T ss_pred eEEEEEEecCCCCCCcEEeEEEEECC--EEEEeCCCCCcccCcEEEecCcEEEEECCCC--------------CCCeeEE
Confidence 89999999998889999999999986 4999999999999999999875 45544321 1256899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.++. ++|+|.|+|.+|++.|+.+|+.++..
T Consensus 73 ~i~~~~---------r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 73 LVKCFD---------KTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp EEECSS---------CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC---------CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 998874 89999999999999999999888875
No 23
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.68 E-value=1.7e-17 Score=150.58 Aligned_cols=103 Identities=18% Similarity=0.400 Sum_probs=83.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhccc-CCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAE-KGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~-~~~~~~F 500 (758)
+++|||.|+|+..+.|++|||||+...+.|+||+++.+..++|.|+|.+|.+........ + .|+ ....++|
T Consensus 9 ~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~--~------~~~~~~~~~~F 80 (117)
T 1v5u_A 9 SYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTI--G------APKTVDEKAFF 80 (117)
T ss_dssp SEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCT--T------SCSSSCTTTCE
T ss_pred cEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccc--c------ccccCCCCeEE
Confidence 899999999988899999999999533469999999999999999999887543322110 0 011 2356899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.++. |+|+|.|+|.+|++.|+.+|+.++..
T Consensus 81 ~i~~~~---------r~~~l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 81 DVKTTR---------RVYNFCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp EEEESS---------CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred EEECCC---------ceEEEECCCHHHHHHHHHHHHHHhcc
Confidence 998764 89999999999999999999998865
No 24
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=148.80 Aligned_cols=98 Identities=26% Similarity=0.455 Sum_probs=82.5
Q ss_pred cccchhhccc-CCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKS-SKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g-~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|++ ...+.|++|||||.+. .|+||+++.+..++|.|+|.+|.|..+.... ..+..++|
T Consensus 12 ~~~G~L~K~~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~------------~~~~~~~F 77 (117)
T 2d9y_A 12 TKAGWLFKQASSGVKQWNKRWFVLVDR--CLFYYKDEKEESILGSIPLLSFRVAAVQPSD------------NISRKHTF 77 (117)
T ss_dssp CEEEEEEEECTTSSSCEEEEEEEEETT--EEEEESSTTCCSCCEEEECSSCEEEECCTTT------------TCCCSSEE
T ss_pred eEEEEEEEeCCCCCCCceEEEEEECCC--EEEEECCCCCCCcCCEEEeCCeEEEEcCccc------------cCCCccEE
Confidence 8999999998 4678999999999875 5999999999999999999999876553221 02367899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.++. .++|+|.|+|.+|++.|+.+|+.++..
T Consensus 78 ~i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 78 KAEHAG--------VRTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp EEECSS--------SCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred EEEcCC--------CcEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 997653 589999999999999999999888763
No 25
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.67 E-value=3.6e-17 Score=150.92 Aligned_cols=97 Identities=22% Similarity=0.373 Sum_probs=82.7
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|++. ..+.|++|||||++. .|+||+++.+..++|.|+|.+|.|..+.... ..++.++|
T Consensus 22 ~~~G~L~K~~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~------------~~~~~~~F 87 (128)
T 2dkp_A 22 VRRGWLYKQDSTGMKLWKKRWFVLSDL--CLFYYRDEKEEGILGSILLPSFQIALLTSED------------HINRKYAF 87 (128)
T ss_dssp CEEEEEEEECCSSSCCEEEEEEEEETT--EEEEESSTTCCSEEEEECGGGSEEEECCGGG------------CCSSCSEE
T ss_pred EEEEEEEEeCCCCCCCceeEEEEEeCC--EEEEECCCCCcccceEEEcCceEEEEcCCcc------------cCCCCeEE
Confidence 89999999987 688999999999865 5999999999999999999999887554321 01367899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.|.+++ .++|+|.|+|.+|++.|+.+|+.++.
T Consensus 88 ~i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 88 KAAHPN--------MRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp EEECSS--------SCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred EEEcCC--------CCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 999874 58999999999999999999977765
No 26
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.67 E-value=2.4e-17 Score=151.07 Aligned_cols=98 Identities=27% Similarity=0.401 Sum_probs=83.3
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+|+ ..+.|++|||||.+. .|+||+++.+..++|.|+|.+|.|....... ..+..++|
T Consensus 12 ~~~G~L~K~~~~~~~~WkkR~fvL~~~--~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~------------~~~~~~~f 77 (123)
T 1upq_A 12 HIRGWLHKQDSSGLRLWKRRWFVLSGH--CLFYYKDSREESVLGSVLLPSYNIRPDGPGA------------PRGRRFTF 77 (123)
T ss_dssp EEEEEEEEECSSSSCCEEEEEEEEETT--EEEEESSTTCCSCCEEEEGGGCEEEECCSSC------------TTSSSSEE
T ss_pred eEEEEEEeeCCCCCCCceeEEEEEeCC--EEEEECCCCCcccceEEECCCCEEEECCCCc------------cCCCcEEE
Confidence 89999999985 678999999999865 5999999999999999999999887654321 12367899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.+++ .++|+|.|+|.+|++.|+.+|+.++..
T Consensus 78 ~i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~a~~~ 110 (123)
T 1upq_A 78 TAEHPG--------MRTYVLAADTLEDLRGWLRALGRASRA 110 (123)
T ss_dssp EEECTT--------SCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred EEECCC--------CeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 998873 589999999999999999999998875
No 27
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=145.58 Aligned_cols=89 Identities=26% Similarity=0.470 Sum_probs=75.6
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
.++|||.|+|...++||+|||||.+. .|+||+++.+. .+.|.|+|.+|.+.... ...+.
T Consensus 2 ~k~G~L~K~g~~~k~WkkR~FvL~~~--~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~-----------------~~~~~ 62 (94)
T 2rsg_A 2 ERCGVLSKWTNYIHGWQDRWVVLKNN--ALSYYKSEDETEYGCRGSICLSKAVITPHD-----------------FDECR 62 (94)
T ss_dssp CEEEEEEEESSSTTCEEEEEEEEETT--EEEEESSTTGGGTCCSEEEETTTCEEEECS-----------------SCSSE
T ss_pred CEEEEEEEeCCCCCCceEEEEEEECC--EEEEEEecccccccceeeEecceeeeecCc-----------------cccee
Confidence 68999999999999999999999975 59999988765 47899999988764321 24678
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
|.|.+++ |+|+|.|+|++|+++|+.+|+++
T Consensus 63 F~i~~~~---------r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 63 FDISVND---------SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEEETT---------EEEEEECCSSCCTHHHHHHHHHH
T ss_pred EEEEeCC---------eEEEEECCCHHHHHHHHHHHHhh
Confidence 9999874 89999999999999999999764
No 28
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.67 E-value=2.5e-17 Score=154.48 Aligned_cols=98 Identities=16% Similarity=0.293 Sum_probs=77.7
Q ss_pred cccchhhccc-CCCCCcccceeeeecC-Ccccccccc----hhhhhccceeecCcc-ccccccccccccCchhhhhcccC
Q 004370 422 ITAGFLLKKS-SKTNGWSKRWFVLNEK-TGKLGYTKK----QEERHFRGVVTLEEC-YIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 422 i~~GwL~K~g-~~~~~WkkRWFVL~~~-sg~L~YyK~----~~ek~~kG~I~L~~~-~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
.++|||.|+| ...+.||||||||+.. ...|+|||+ +.+..+.|.|+|..| .|....... ..
T Consensus 16 ~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~------------~~ 83 (126)
T 1v5p_A 16 RICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQ------------KP 83 (126)
T ss_dssp CEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTT------------SC
T ss_pred ceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCccc------------CC
Confidence 6789999998 6688999999999942 235888899 567899999999884 555433110 01
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
+..++|.|.++. |+|+|.|+|++|+++||.+|+.++.
T Consensus 84 ~~~~~F~i~t~~---------r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 84 KTPFCFVINALS---------QRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp SCSSEEEEECSS---------CEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEEECCC---------EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 367899998774 9999999999999999999988765
No 29
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-17 Score=147.58 Aligned_cols=97 Identities=26% Similarity=0.460 Sum_probs=81.5
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+|+ ..+.|++|||||++. .|+||+++.+..++|.|+|.+|.|..+.... ..++.++|
T Consensus 23 ~~~G~L~K~~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~------------~~~~~~~F 88 (122)
T 2yry_A 23 TKAGWLFKQASSGVKQWNKRWFVLVDR--CLFYYKDEKEESILGSIPLLSFRVAAVQPSD------------NISRKHTF 88 (122)
T ss_dssp EEEEEEEEECCSSSCCEEEEEEEEETT--EEEEESSTTCCSCCEEEESTTCCCEECCTTC------------SCSSSSEE
T ss_pred cEEEEEEEECCCCCCCcEEEEEEEeCC--EEEEECCCCCCCcccEEEcCCCEEEEcCccc------------cCCcccEE
Confidence 89999999974 678999999999875 5999999999999999999999876553221 02367899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.|.++. .++|+|.|+|.+|+++|+.+|+.++.
T Consensus 89 ~i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 89 KAEHAG--------VRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp EEECSS--------SCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EEecCC--------CcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 997653 58999999999999999999988763
No 30
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.66 E-value=1.9e-17 Score=147.43 Aligned_cols=98 Identities=20% Similarity=0.424 Sum_probs=81.7
Q ss_pred cccchhhcccCCC----CCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSSKT----NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~----~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
+++|||.|+|... +.|++|||||++. .|+||+++.+..++|.|+|.+|.+...+... .+.+..
T Consensus 4 ~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~-----------~~~~~~ 70 (108)
T 1u5d_A 4 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRG--LFYYYANEKSKQPKGTFLIKGYSVRMAPHLR-----------RDSKKE 70 (108)
T ss_dssp EEEEEEEEEEECSSSSCEEEEEEEEEEETT--EEEEESSTTCSSCSEEEECTTCEEEECGGGC-----------SSGGGG
T ss_pred cEEEEEEEcCCCCCccccCceeeEEEEeCC--EEEEecCCCCCCCCEEEEecceEEEeCCccc-----------cccCCc
Confidence 8999999997542 7899999999976 5999999999999999999999976543210 011257
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
++|.|.+++ .++|+|.|+|.+|+++|+.+|+.++.
T Consensus 71 ~~F~i~~~~--------~r~~~l~a~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 71 SCFELTSQD--------RRTYEFTATSPAEARDWVDQISFLLK 105 (108)
T ss_dssp GEEEEECSS--------SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCC--------CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 899999874 58999999999999999999998875
No 31
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.66 E-value=3.8e-17 Score=150.76 Aligned_cols=95 Identities=24% Similarity=0.402 Sum_probs=82.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..+.|++|||||.+. .|+||+++.+..++|.|+|.+|.+...... .+..++|.
T Consensus 19 ~~~G~L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~--------------~~~~~~F~ 82 (126)
T 1fao_A 19 TKEGYLTKQGGLVKTWKTRWFTLHRN--ELKYFKDQMSPEPIRILDLTECSAVQFDYS--------------QERVNCFC 82 (126)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEETT--EEEEESSTTCSSCSEEEEGGGCCEEEEECS--------------SSSSSEEE
T ss_pred cEEEEEEEcCCCCCCcccEEEEEECC--EEEEeCCCCCCCceeEEEccceEEEEeccc--------------CCCCCEEE
Confidence 89999999998889999999999976 499999999999999999999984332211 13678999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.++. ++|+|.|+|.+|++.|+.+|+.++..
T Consensus 83 i~~~~---------r~~~l~a~s~~e~~~Wi~al~~~i~~ 113 (126)
T 1fao_A 83 LVFPF---------RTFYLCAKTGVEADEWIKILRWKLSQ 113 (126)
T ss_dssp EEETT---------EEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEeCC---------cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99874 89999999999999999999998876
No 32
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.66 E-value=3.1e-17 Score=156.23 Aligned_cols=97 Identities=24% Similarity=0.424 Sum_probs=81.8
Q ss_pred cccchhhccc------CCCCCcccceeeeecCC-c--ccccccchh-hhhccceeecCccccccccccccccCchhhhhc
Q 004370 422 ITAGFLLKKS------SKTNGWSKRWFVLNEKT-G--KLGYTKKQE-ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQ 491 (758)
Q Consensus 422 i~~GwL~K~g------~~~~~WkkRWFVL~~~s-g--~L~YyK~~~-ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~n 491 (758)
+++|||.|+| ...+.|++|||||.+.. | .|+||+++. +..++|+|+|.+|.+.....
T Consensus 19 ~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~~------------- 85 (150)
T 1wg7_A 19 TKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN------------- 85 (150)
T ss_dssp CCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCC-------------
T ss_pred eEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecCC-------------
Confidence 8999999998 34578999999999751 1 699999998 88999999999998764322
Q ss_pred ccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 492 AEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 492 p~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+..++|.|.+++ .|+|+|.|+|.+|++.|+.+|+.++..
T Consensus 86 --~~~~~~F~i~~~~--------~r~~~l~A~s~~e~~~Wi~al~~ai~~ 125 (150)
T 1wg7_A 86 --KVRRFAFELKMQD--------KSSYLLAADSEVEMEEWITILNKILQL 125 (150)
T ss_dssp --SSCTTEEEEECSS--------SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CCCceEEEEEeCC--------CcEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 1267899999984 489999999999999999999888764
No 33
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.66 E-value=2.6e-17 Score=146.65 Aligned_cols=91 Identities=26% Similarity=0.466 Sum_probs=76.6
Q ss_pred cchhhcccCCCCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 424 AGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 424 ~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+|||.|+|...++|++|||||.+. .|+||+++.+. .++|.|+|.+|.|..... ..+.|.
T Consensus 2 eG~L~K~g~~~k~Wk~R~fvL~~~--~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~-----------------~~~~F~ 62 (103)
T 3rcp_A 2 EGVLYKWTNYLTGWQPRWFVLDNG--ILSYYDSQDDVCKGSKGSIKMAVCEIKVHSA-----------------DNTRME 62 (103)
T ss_dssp EEEEEEECCTTTCEEEEEEEEETT--EEEEESSCC---CCCSCEEEGGGCEEECCTT-----------------CSSEEE
T ss_pred ceEEEEccCCCCCeeceEEEEECC--EEEEEecCCcccCCcccEEEeeeeEEEEcCC-----------------CCceEE
Confidence 799999999999999999999964 69999999864 689999999988764321 356899
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++ .++|+|.|+|.+|++.|+.+|+.++..
T Consensus 63 i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~a~~~ 94 (103)
T 3rcp_A 63 LIIPG--------EQHFYMKAVNAAERQRWLVALGSSKAS 94 (103)
T ss_dssp EEETT--------TEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred EEeCC--------CCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 98863 589999999999999999999887754
No 34
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.1e-17 Score=152.05 Aligned_cols=98 Identities=22% Similarity=0.430 Sum_probs=77.5
Q ss_pred cccchhhcccCCCCCcccceeee-ecCCcccccccchhhhhccceeecC-cc-ccc------cccccccccCchhhhhcc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVL-NEKTGKLGYTKKQEERHFRGVVTLE-EC-YIE------EVVEDEDAKSSKDKKKQA 492 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL-~~~sg~L~YyK~~~ek~~kG~I~L~-~~-~v~------~~~~~~~~~s~k~~~~np 492 (758)
+++|||.|+|...++||+||||| ++ +.|+|||++.+..++|.|.|. .| .|. .+... .
T Consensus 9 ~~~G~L~K~g~~~k~WkkRwFVL~~~--~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~------------~ 74 (130)
T 2d9v_A 9 VRGGWLWRQSSILRRWKRNWFALWLD--GTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPP------------E 74 (130)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEETT--TEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCC------------S
T ss_pred eEEEEEEeecCccCCceeeEEEEccC--CEEEEEeCCCCCCcCceEecccceeEEeccccccccCCC------------C
Confidence 89999999998889999999999 54 469999999999999999875 23 221 11100 0
Q ss_pred cCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 493 EKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 493 ~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
..++.++|.|.+++ .|+|+|.|+|.+|+++|+.+|+.++..
T Consensus 75 ~~~~~~~F~I~~~~--------~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 75 GRSRDGLLTVNLRE--------GSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp SCCTTTEEEEEETT--------SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CCCcCcEEEEEeCC--------CCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 12367899999863 488999999999999999999887764
No 35
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.65 E-value=4.3e-17 Score=160.18 Aligned_cols=109 Identities=19% Similarity=0.323 Sum_probs=78.4
Q ss_pred cccchhhcccC-----CCCCcccceeeeecCCcccccccc----hhhhhccceeecCccc-cccccccc-cccCchhhhh
Q 004370 422 ITAGFLLKKSS-----KTNGWSKRWFVLNEKTGKLGYTKK----QEERHFRGVVTLEECY-IEEVVEDE-DAKSSKDKKK 490 (758)
Q Consensus 422 i~~GwL~K~g~-----~~~~WkkRWFVL~~~sg~L~YyK~----~~ek~~kG~I~L~~~~-v~~~~~~~-~~~s~k~~~~ 490 (758)
+++|||.|+|. ..++||+|||||++. .|+|||+ +.+..++|.|+|.++. |+.+.... .....+....
T Consensus 4 ikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~--~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~ 81 (169)
T 1btk_A 4 ILESIFLKRSQQKKKTSPLNFKKCLFLLTVH--KLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR 81 (169)
T ss_dssp CEEEEEEEECCCSSTTCCCCEEEEEEEECSS--EEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred EEEEEEEEecCCCCCcccCCCceEEEEEcCC--EEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence 89999999863 246899999999976 5999999 5788999999999876 44441100 0000000000
Q ss_pred c-cc---------CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 491 Q-AE---------KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 491 n-p~---------~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+ ++ ...++.|.|.+++ |+|+|.|+|.+|+++||.+|+.++..
T Consensus 82 ~~~~~~~~~~~i~~~~~~~F~I~t~~---------rt~yl~A~s~~E~~eWi~aI~~~i~~ 133 (169)
T 1btk_A 82 GEESSEMEQISIIERFPYPFQVVYDE---------GPLYVFSPTEELRKRWIHQLKNVIRY 133 (169)
T ss_dssp ------CCTTHHHHCCCEEEEEEETT---------CCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred cCcccccccccccccccccEEEEeCC---------ceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 0 00 0112899999885 89999999999999999999998875
No 36
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=6.4e-17 Score=148.40 Aligned_cols=97 Identities=25% Similarity=0.479 Sum_probs=81.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcccc-ccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYI-EEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v-~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+|...+.|++|||||+++ .|+||+++.+..++|.|+|.+|.. ....... .....++|
T Consensus 15 ~~~G~L~K~g~~~~~Wk~R~fvL~~~--~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~------------~~~~~~~F 80 (125)
T 1eaz_A 15 IKAGYCVKQGAVMKNWKRRYFQLDEN--TIGYFKSELEKEPLRVIPLKEVHKVQECKQSD------------IMMRDNLF 80 (125)
T ss_dssp SEEEEEEEECTTTCCEEEEEEEECSS--EEEEESSTTCSSCSEEEEGGGCCEEEECTTHH------------HHTCSSEE
T ss_pred cEEEEEEEeCCCCCCcceEEEEEeCC--EEEEEcCCCCCcceeEEEcccceEEeeccccc------------cCCcCCEE
Confidence 89999999998889999999999976 599999999999999999998863 3221110 01257899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.++. |+|+|.|+|.+|+++|+.+|+.++..
T Consensus 81 ~i~~~~---------r~~~l~a~s~~e~~~W~~al~~~i~~ 112 (125)
T 1eaz_A 81 EIVTTS---------RTFYVQADSPEEMHSWIKAVSGAIVA 112 (125)
T ss_dssp EEECSS---------CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC---------cEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 999874 89999999999999999999988876
No 37
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.64 E-value=5.5e-17 Score=146.65 Aligned_cols=98 Identities=22% Similarity=0.425 Sum_probs=77.2
Q ss_pred cccchhhcccCCCCCcccceeee-ecCCcccccccchhhhhccceeecCccccc-----cccccccccCchhhhhccc-C
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVL-NEKTGKLGYTKKQEERHFRGVVTLEECYIE-----EVVEDEDAKSSKDKKKQAE-K 494 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL-~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~-----~~~~~~~~~s~k~~~~np~-~ 494 (758)
+++|||.|+|...+.|++||||| .+. .|+||+++.+..++|.|+|..+.|. .+..-. .++ .
T Consensus 6 ~~~G~L~K~g~~~k~WkkR~fvL~~~~--~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~----------~~~~~ 73 (112)
T 3aj4_A 6 VKSGWLLRQSTILKRWKKNWFDLWSDG--HLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQ----------PPDGK 73 (112)
T ss_dssp SEEEEEEEECSSSCCEEEEEEEECTTS--EEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCC----------CSTTC
T ss_pred eEEEEEEeeCCCCCCeeceEEEEeeCC--EEEEEcCCCCCCCCccccccccceeecccccccccC----------CCCCC
Confidence 89999999999889999999999 543 6999999999999999999654432 111000 011 1
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
..+++|.|.+++ .|+|+|.|+|++|++.|+.+|+.+.
T Consensus 74 ~~~~~F~i~~~~--------~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 74 SKDCMLQIVCRD--------GKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp CGGGEEEEEETT--------SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcCcEEEEEecC--------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 236899998763 5899999999999999999998765
No 38
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.64 E-value=9e-17 Score=146.12 Aligned_cols=90 Identities=18% Similarity=0.410 Sum_probs=78.0
Q ss_pred cccchhhcccC-CCCCcccceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSS-KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~-~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+++|||.|+|. ..+.|++|||||++. .|+||+++.+..++|.|+|.++. |... ..++
T Consensus 9 ~~~G~L~K~~~~~~~~WkkR~fvL~~~--~L~yy~~~~~~~~~g~i~l~~~~~v~~~-------------------~~~~ 67 (115)
T 2cod_A 9 VKSGWLDKLSPQGKRMFQKRWVKFDGL--SISYYNNEKEMYSKGIIPLSAISTVRVQ-------------------GDNK 67 (115)
T ss_dssp CEEEEEEECCSSSSSCCEEEEEEECSS--EEEEEESSCCSSCCCEEETTTEEEEEEE-------------------TTTE
T ss_pred cEEEEEEEcCCCCCCCCceEEEEEECC--EEEEEcCCCCcccCCEEECCcceEEEeC-------------------CCCE
Confidence 89999999987 678999999999976 59999999999999999998875 3211 2478
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.|.++. |+|+|.|+|.+|+++|+.+|+.++..
T Consensus 68 F~i~~~~---------r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 68 FEVVTTQ---------RTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp EEEEESS---------CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCC---------cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 9998764 89999999999999999999988864
No 39
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.64 E-value=3.9e-17 Score=150.70 Aligned_cols=103 Identities=17% Similarity=0.281 Sum_probs=82.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|...++|++|||||+++ +.|+||+++.+..++|.|+|..+.+..+.... .+.++.++|.
T Consensus 9 ~~~G~L~K~g~~~k~WkkRwfvL~~~-~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~-----------~~~~~~~~F~ 76 (125)
T 1unq_A 9 VKEGWLHKRGEYIKTWRPRYFLLKND-GTFIGYKERPQDVDQREAPLNNFSVAQCQLMK-----------TERPRPNTFI 76 (125)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEETT-SEEEEESSCCCSHHHHTSCSEEEECTTCEEEE-----------ECSSSTTEEE
T ss_pred eEEeeEEeccCCccCccCcEEEEecC-CEEEEEeCCCCCCCCceeEccceeEEeeeecc-----------cccCCCCEEE
Confidence 89999999998889999999999964 36999999999999999999988775432110 0123678999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.++. -...++|+|.|+|.+|++.|+.+|+.++..
T Consensus 77 I~~~~-----~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 77 IRCLQ-----WTTVIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp EEEEE-----TTEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEecC-----CCCceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 98641 012589999999999999999999988875
No 40
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.63 E-value=1.1e-16 Score=150.00 Aligned_cols=96 Identities=19% Similarity=0.334 Sum_probs=77.9
Q ss_pred cccchhhcc----cCC--CCCcccceeeeecCCcccccccchh-----------hhhccceeecCccccccccccccccC
Q 004370 422 ITAGFLLKK----SSK--TNGWSKRWFVLNEKTGKLGYTKKQE-----------ERHFRGVVTLEECYIEEVVEDEDAKS 484 (758)
Q Consensus 422 i~~GwL~K~----g~~--~~~WkkRWFVL~~~sg~L~YyK~~~-----------ek~~kG~I~L~~~~v~~~~~~~~~~s 484 (758)
+++|||.|+ +++ .++|++|||||.++. |+|||++. +..+.|.|+|.+|.|....+.
T Consensus 13 ~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~--L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~----- 85 (129)
T 2p0d_A 13 EKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNS--LVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHL----- 85 (129)
T ss_dssp EEEEEEEEEEEEETTEECCCCCEEEEEEEESSE--EEEESCC--------------CCSEEEECTTCEEEECTTS-----
T ss_pred eEEEEEEEeeeccCCCcCCCCceEEEEEEeCCE--EEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCC-----
Confidence 899999985 332 489999999999875 99999994 668999999999998653211
Q ss_pred chhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 485 SKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 485 ~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++.++|.|.+++ .+.|+|.|+|.+|+++|+.+|+.+|..
T Consensus 86 ---------~kr~~~F~l~t~~--------~~~yl~qA~s~~e~~~Wi~aI~~~i~~ 125 (129)
T 2p0d_A 86 ---------SSRRNVLHIRTIP--------GHEFLLQSDHETELRAWHRALRTVIER 125 (129)
T ss_dssp ---------CSSSSEEEEECTT--------SCEEEEECSCHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCcEEEEEcCC--------CCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 1367899999874 578999999999999999999988863
No 41
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.63 E-value=9.9e-17 Score=149.33 Aligned_cols=108 Identities=20% Similarity=0.355 Sum_probs=81.3
Q ss_pred cccchhhcc--cCCCCCcccceeeeecCCcccccccchhh---hhccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKK--SSKTNGWSKRWFVLNEKTGKLGYTKKQEE---RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~--g~~~~~WkkRWFVL~~~sg~L~YyK~~~e---k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
+++|||.|+ |+..+.|++|||||++. .|+||+++++ ..++|.|+|.+|.+..+..... ...++
T Consensus 6 ~~~G~L~K~~~~~~~~~WkrRwfvL~~~--~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~----------~~~~~ 73 (134)
T 2y7b_A 6 EERGFLTIFEDVSGFGAWHRRWCVLSGN--CISYWTYPDDEKRKNPIGRINLANCTSRQIEPANR----------EFCAR 73 (134)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETT--EEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCT----------TTCCC
T ss_pred eEEeeEEEEcCCCCCCCcEEEEEEEECC--EEEEECCCCcccccCceEEEEhhhCccccccccch----------hhccC
Confidence 899999999 77788999999999976 5999998776 8999999999998644432210 00136
Q ss_pred ceEEEEeccCcchh-----h------hhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 497 SLIFKITSKVPYKT-----V------LKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 497 ~~~F~I~t~~~~k~-----v------~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+++|.|.+..+.+. + -+..++|+|+|+|.+|++.|+.+|+.++..
T Consensus 74 ~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 74 RNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp TTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 78999987321110 0 001257999999999999999999988864
No 42
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.62 E-value=1.7e-16 Score=145.21 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=76.9
Q ss_pred ccchhhcc-cC---CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 423 TAGFLLKK-SS---KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 423 ~~GwL~K~-g~---~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
++|||.|+ |+ ..+.|++|||||.+. .|+|||++++..+.|.|+|.++.+..+... .+.++++
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~--~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~------------~~~~r~~ 67 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNG--ILYQYPDRTDVIPLLSVNMGGEQCGGCRRA------------NTTDRPH 67 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETT--EEEEESSSSCCSCSEEEETTC-CEEEEEEC------------CCSSCTT
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECC--EEEEECCCCCCCccceEEecCCEEEeeecc------------CCCCCCe
Confidence 58999877 43 468999999999976 599999999999999999987654311110 0123789
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|.|.+++ .++|+|+|+|++|+++|+.+|+.++..
T Consensus 68 ~F~l~~~~--------~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 68 AFQVILSD--------RPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp EEEEEETT--------SCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEcCC--------CCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 99999764 589999999999999999999888864
No 43
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.62 E-value=2e-16 Score=147.34 Aligned_cols=101 Identities=20% Similarity=0.304 Sum_probs=74.2
Q ss_pred cccchhhcccC--CCCCcccceeeeecCCcccccccchhh-----------------hhccceeecCccccccccccccc
Q 004370 422 ITAGFLLKKSS--KTNGWSKRWFVLNEKTGKLGYTKKQEE-----------------RHFRGVVTLEECYIEEVVEDEDA 482 (758)
Q Consensus 422 i~~GwL~K~g~--~~~~WkkRWFVL~~~sg~L~YyK~~~e-----------------k~~kG~I~L~~~~v~~~~~~~~~ 482 (758)
+++|||.|+|+ ..++||+|||||+++ |.|+||+++.+ +.+.|.|+|.+|.+..+..+.
T Consensus 5 ~k~G~L~K~~g~~~~k~WkkRwFvL~~~-~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~-- 81 (128)
T 2rlo_A 5 IKQSFLLKRSGNSLNKEWKKKYVTLSSN-GFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGS-- 81 (128)
T ss_dssp EEEEEEEEECSCSTTCCEEEEEEEEETT-TEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCC--
T ss_pred eeEEEEEEecCCCccCCccEEEEEEeCC-CEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccccc--
Confidence 89999999954 578999999999964 47999987543 234566666666554321100
Q ss_pred cCchhhhhcc-cCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 483 KSSKDKKKQA-EKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 483 ~s~k~~~~np-~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+ .....++|.|.+++ .|+|+|+|+|.+|+++|+.+|+.++..
T Consensus 82 --------~~~~~~~~~~F~I~t~~--------~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 82 --------AGQAEEENFEFLIVSST--------GQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp --------CSSCCCCCCCEEEECTT--------SCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccCCceEEEEcCC--------CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 00 01367899999874 589999999999999999999988763
No 44
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.62 E-value=2.3e-16 Score=150.18 Aligned_cols=99 Identities=19% Similarity=0.393 Sum_probs=81.8
Q ss_pred cccchhhcccCCC----CCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSSKT----NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~----~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
+++|||.|+|... ++|++|||||++. .|+||+++.+..++|.|+|.+|.+..+.... .+.++.
T Consensus 18 ~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~--~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~-----------~~~~~~ 84 (148)
T 1u5f_A 18 IKAGYLEKRRKDHSFLGFEWQKRWCALSKT--VFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR-----------KDGKKD 84 (148)
T ss_dssp EEEEEEEEECCCSSCSSCSEEEEEEEEETT--EEEEESSTTCSSCSEEEECTTCEEEECTTSC-----------SSTTGG
T ss_pred cEEEEEEEeCCCCCCcCCCceeEEEEEECC--EEEEEcCCCCcccceEEEcCCcEEEECCCcc-----------cCCCCc
Confidence 8999999998643 5999999999965 5999999999999999999999876543210 012356
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
++|.|.+++ .|+|+|+|+|.+|++.|+.+|+.++..
T Consensus 85 ~~F~I~~~~--------~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 85 CCFEICAPD--------KRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp GEEEEECTT--------SCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred cEEEEECCC--------CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 899999874 589999999999999999999988875
No 45
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.60 E-value=2.7e-16 Score=141.72 Aligned_cols=93 Identities=18% Similarity=0.283 Sum_probs=76.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh-hhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE-RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e-k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+ ..++|++|||||+++. |+||+++.+ ..+.+.|+|.+|.|....+ .++.++|
T Consensus 9 ~~~G~L~K~--~~k~Wk~RwfvL~~~~--L~yyk~~~~~~~~~~~i~l~~~~v~~~~~---------------~~~~~~F 69 (107)
T 2cof_A 9 ETSSYLNVL--VNSQWKSRWCSVRDNH--LHFYQDRNRSKVAQQPLSLVGCEVVPDPS---------------PDHLYSF 69 (107)
T ss_dssp TTCCEEEEE--ETTEEEEEEEEECSSC--EEEECSSTTCSEEEEEECTTTCEEECCCB---------------TTBSCEE
T ss_pred cEeEEEEEe--cCCCcceEEEEEECCE--EEEEeCCcccCCCeeEEeccceEEEECCC---------------CCCCeEE
Confidence 899999999 6778999999999874 999999875 4556777778887764332 1267899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.++. .|+|+|.|+|.+|++.|+.+|+.++..
T Consensus 70 ~i~~~~--------~r~~~l~A~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 70 RILHKG--------EELAKLEAKSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp EEEETT--------EEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred EEEeCC--------CeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 999873 589999999999999999999887753
No 46
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.60 E-value=4.1e-16 Score=152.27 Aligned_cols=100 Identities=22% Similarity=0.359 Sum_probs=78.8
Q ss_pred cccchhhcccCC-----CCCcccceeeeecCCcccccccchhh-hhccceeecCcccc-ccccccccccCchhhhhcccC
Q 004370 422 ITAGFLLKKSSK-----TNGWSKRWFVLNEKTGKLGYTKKQEE-RHFRGVVTLEECYI-EEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 422 i~~GwL~K~g~~-----~~~WkkRWFVL~~~sg~L~YyK~~~e-k~~kG~I~L~~~~v-~~~~~~~~~~s~k~~~~np~~ 494 (758)
+++|||.|+|.. .++||+|||||++. .|+|||++.+ ..++|.|+|.++.. +.+...... ...
T Consensus 16 i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~--~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~---------~~~ 84 (164)
T 2lul_A 16 ILEEILIKRSQQKKKTSPLNYKERLFVLTKS--MLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGV---------IPC 84 (164)
T ss_dssp EEEEEEEEECCCCSSSCCCCEEEEEEEEESS--EEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSS---------CCS
T ss_pred eEEEEEEEecCCCCCCCCCCceeEEEEEECC--EEEEEeccCcccccccEEEEeeeEEEEeccccccC---------ccc
Confidence 999999999743 24799999999976 4999998864 56799999988764 333322100 012
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
...+.|.|.+++ |+|+|.|+|++|+++||.+|+.++..
T Consensus 85 ~~~~~f~i~t~~---------rt~~l~A~s~~e~~~Wi~aL~~~i~~ 122 (164)
T 2lul_A 85 QNKYPFQVVHDA---------NTLYIFAPSPQSRDLWVKKLKEEIKN 122 (164)
T ss_dssp SSCSEEEEECSS---------CEEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred ccceeEEEecCC---------cEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 357899999985 89999999999999999999999875
No 47
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=6e-16 Score=141.11 Aligned_cols=91 Identities=20% Similarity=0.325 Sum_probs=74.0
Q ss_pred cccchhhcccCCC-CCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKT-NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~-~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.|+|... +.|++|||||.+. .|+||+++.+. +.+.|.|-+|.|...+ ...++|
T Consensus 11 ~~~G~L~K~~~~~~k~WkkR~fvL~~~--~L~yyk~~~~~-~~~~i~l~~~~v~~~~-----------------~~~~~F 70 (114)
T 2da0_A 11 EKKGYLLKKSDGIRKVWQRRKCSVKNG--ILTISHATSNR-QPAKLNLLTCQVKPNA-----------------EDKKSF 70 (114)
T ss_dssp CEEEEEEEECSSSCCCEEEEEEEEETT--EEEECCSSCCS-CCEEEETTTSEEEECS-----------------SSSSCE
T ss_pred cEEEEEEEeCCCCCCCceeEEEEEeCC--EEEEEcCCCCC-CCCEEEeeeeEEEECC-----------------CCCCEE
Confidence 8999999998755 8999999999865 59999997664 4566666666655211 145799
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.++. |+|+|.|+|.+|++.|+.+|+.++..
T Consensus 71 ~I~~~~---------r~~~l~a~s~~e~~~Wi~al~~~~~~ 102 (114)
T 2da0_A 71 DLISHN---------RTYHFQAEDEQDYVAWISVLTNSKEE 102 (114)
T ss_dssp EEEETT---------EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEcCC---------cEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 999874 89999999999999999999988875
No 48
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.59 E-value=6.9e-16 Score=142.26 Aligned_cols=96 Identities=22% Similarity=0.404 Sum_probs=76.8
Q ss_pred cccchhhcccCC--------CCCcccceeeeecCCcccccccchhhhh----ccc--eeecCccccccccccccccCchh
Q 004370 422 ITAGFLLKKSSK--------TNGWSKRWFVLNEKTGKLGYTKKQEERH----FRG--VVTLEECYIEEVVEDEDAKSSKD 487 (758)
Q Consensus 422 i~~GwL~K~g~~--------~~~WkkRWFVL~~~sg~L~YyK~~~ek~----~kG--~I~L~~~~v~~~~~~~~~~s~k~ 487 (758)
+++|||.|++.. .+.|++|||||.+.. |+|||++.+.. ++| .|+|.+|.+....+.
T Consensus 9 ~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~--L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~-------- 78 (123)
T 1wjm_A 9 QMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGS--LGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDY-------- 78 (123)
T ss_dssp CEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTE--EEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTC--------
T ss_pred EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCE--EEEEEcccccccCcccCCCceEEccCcEEeecccc--------
Confidence 899999998653 789999999999874 99999998763 344 466677766533221
Q ss_pred hhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 488 KKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 488 ~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++.++|.|.+++ .++|+|.|+|.+|+++|+.+|+.++..
T Consensus 79 ------~~r~~~F~i~~~~--------~~~~~f~A~s~~e~~~Wi~ai~~~~~~ 118 (123)
T 1wjm_A 79 ------RKRKHVFKLGLQD--------GKEYLFQAKDEAEMSSWLRVVNAAIAS 118 (123)
T ss_dssp ------SSCSSEEEEECSS--------SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ------cCCCCEEEEEEcC--------CcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 2378999999874 589999999999999999999988875
No 49
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.58 E-value=8e-16 Score=137.05 Aligned_cols=92 Identities=23% Similarity=0.445 Sum_probs=72.8
Q ss_pred ccchhhccc--------CCCCCcccceeeeecCCcccccccchhhh------hccceeecCccccccccccccccCchhh
Q 004370 423 TAGFLLKKS--------SKTNGWSKRWFVLNEKTGKLGYTKKQEER------HFRGVVTLEECYIEEVVEDEDAKSSKDK 488 (758)
Q Consensus 423 ~~GwL~K~g--------~~~~~WkkRWFVL~~~sg~L~YyK~~~ek------~~kG~I~L~~~~v~~~~~~~~~~s~k~~ 488 (758)
.+|||.|++ ...++|++|||||++. .|+||+++.+. .+.+.|+|.+|.+....+.
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~--~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~--------- 69 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQ--EMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDY--------- 69 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETT--EEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSC---------
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECC--EEEEEeCCcccccCCCCCCcceEECCCCEEEEcccc---------
Confidence 379999998 6678999999999976 59999999853 2456778888766432211
Q ss_pred hhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHH
Q 004370 489 KKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVV 538 (758)
Q Consensus 489 ~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~ 538 (758)
.+++++|.|.+++ .++|+|.|+|.+|+++|+.+|+++
T Consensus 70 -----~~~~~~F~i~~~~--------~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 70 -----KKKKHVFKLRLSD--------GNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp -----CSSSSEEEEECTT--------SCEEEEECSSHHHHHHHHHHHHHC
T ss_pred -----cCCccEEEEEecC--------CCEEEEECCCHHHHHHHHHHHhcC
Confidence 1367899999764 589999999999999999999763
No 50
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.57 E-value=7e-16 Score=167.80 Aligned_cols=103 Identities=26% Similarity=0.484 Sum_probs=86.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..+.|++|||||++. .|+||+++.+..++|+|+|.+|.|..++.. +++++|.
T Consensus 214 ~k~G~L~K~g~~~k~WkkRwFVL~~~--~L~Yyk~~~~~~p~G~I~L~~~~v~~~~~~---------------~~~~~F~ 276 (347)
T 2r09_A 214 DREGWLLKLGGRVKTWKRRWFILTDN--CLYYFEYTTDKEPRGIIPLENLSIREVEDP---------------RKPNCFE 276 (347)
T ss_dssp CEEEEEEEECSSSCCEEEEEEEEETT--EEEEESSTTCSSCSEEEECTTCEEEEECCS---------------SCSSEEE
T ss_pred ccCCeeEecCCCcccceeEEEEEcCC--EEEEEcCCCccCCcEEEEcCCeEEEEccCC---------------CCCCEEE
Confidence 89999999999899999999999976 599999999999999999999987765422 2678999
Q ss_pred EeccCc-------------chhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVP-------------YKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~-------------~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++. .+.+...+|+|+|+|+|.+|+++|+.+|+.++..
T Consensus 277 I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~ 329 (347)
T 2r09_A 277 LYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR 329 (347)
T ss_dssp EECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred EEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 998741 1223334689999999999999999999998874
No 51
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.57 E-value=1.3e-15 Score=154.74 Aligned_cols=101 Identities=19% Similarity=0.351 Sum_probs=83.2
Q ss_pred CccccchhhcccC----CCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCC
Q 004370 420 GEITAGFLLKKSS----KTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKG 495 (758)
Q Consensus 420 ~~i~~GwL~K~g~----~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~ 495 (758)
..+++|||.|+|. ..+.||+|||||++. .|+||+++.+..++|.|+|.+|.+....... .+.+
T Consensus 105 ~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~--~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~~-----------~~~~ 171 (211)
T 1u5e_A 105 FVIKAGYLEKRRKDHSFLGFEWQKRWCALSKT--VFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR-----------KDGK 171 (211)
T ss_dssp SEEEEEEEEEEEHHHHTTTCCCEEEEEEEETT--EEEEESSTTCSSCSEEEECTTCEEEECGGGC-----------SSTT
T ss_pred CccEEEEEEEECCCCCcCCCCcEeEEEEEECC--EEEEEcCCCCccceEEEEeCCcEEEEcCCcc-----------ccCC
Confidence 3489999999975 357899999999976 5999999999999999999999876432210 0123
Q ss_pred CceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 496 PSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 496 ~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+.++|.|.+++ .|+|+|+|+|.+|++.|+.+|+.++..
T Consensus 172 k~~~F~I~t~~--------~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 172 KDCCFEICAPD--------KRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp GGGEEEEECSS--------SCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCC--------CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 56899999874 589999999999999999999998864
No 52
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.56 E-value=2.8e-15 Score=138.44 Aligned_cols=96 Identities=16% Similarity=0.307 Sum_probs=77.0
Q ss_pred cccchhhcccC--------CCCCcccceeeeecCCcccccccchhhhhc--------cceeecCccccccccccccccCc
Q 004370 422 ITAGFLLKKSS--------KTNGWSKRWFVLNEKTGKLGYTKKQEERHF--------RGVVTLEECYIEEVVEDEDAKSS 485 (758)
Q Consensus 422 i~~GwL~K~g~--------~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~--------kG~I~L~~~~v~~~~~~~~~~s~ 485 (758)
.++|||.|++. ..+.|++|||||++.. |+|||++.+..+ .+.|+|.+|.+....+.
T Consensus 9 ~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~--L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~------ 80 (122)
T 1dro_A 9 GHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGR--ISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDY------ 80 (122)
T ss_dssp SEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSC--CBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSS------
T ss_pred EEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCE--EEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCC------
Confidence 79999987742 3578999999999875 999999988765 26788888876543221
Q ss_pred hhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 486 KDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 486 k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+++++|.|.+.+ .++|+|.|+|.+|+++|+.+|+.++..
T Consensus 81 --------~kr~~~F~l~t~~--------~~~~lfqA~s~~e~~~Wi~ai~~~i~~ 120 (122)
T 1dro_A 81 --------TKKKHVLRVKLAN--------GALFLLQAHDDTEMSQWVTSLKAQSDS 120 (122)
T ss_dssp --------SSSTTEEEEECSS--------SCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred --------CCCCeEEEEEEcC--------CCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 1368999999764 589999999999999999999988863
No 53
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.54 E-value=1.8e-15 Score=146.92 Aligned_cols=95 Identities=18% Similarity=0.352 Sum_probs=65.9
Q ss_pred cccchhh----------cccCCCCCcccceeeeecCCcccccccchhh--hhccceeecCc--cccccccccccccCchh
Q 004370 422 ITAGFLL----------KKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE--RHFRGVVTLEE--CYIEEVVEDEDAKSSKD 487 (758)
Q Consensus 422 i~~GwL~----------K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e--k~~kG~I~L~~--~~v~~~~~~~~~~s~k~ 487 (758)
+++|||. |+|+..+.|++|||||.+. .|+||+++.+ ..++|.|+|.. |.+.....
T Consensus 4 ~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~--~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~--------- 72 (168)
T 2j59_M 4 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGH--SLYLYKDKREQTTPSEEEQPISVNACLIDISYS--------- 72 (168)
T ss_dssp CEEEEEEEEECC------------CCEEEEEEEETT--EEEEESCTTCC--------CEECSSCEEEECSS---------
T ss_pred cEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCC--EEEEEECCcccccccCCceEecccceEEEeccc---------
Confidence 8999999 6677788999999999976 5999999966 78899999865 54431111
Q ss_pred hhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 488 KKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 488 ~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+.++.++|.|.+++ ++|+|.|+|.+|+++|+.+|+.++..
T Consensus 73 -----~~~~~~~F~I~t~~---------r~~~l~A~s~~e~~~Wi~ai~~~~~~ 112 (168)
T 2j59_M 73 -----ETKRKNVFRLTTSD---------CECLFQAEDRDDMLAWIKTIQESSNL 112 (168)
T ss_dssp -----SCSCSSEEEEECSS---------CEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred -----cCCCCCEEEEEeCC---------ceEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 12367899999874 88999999999999999999988763
No 54
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.52 E-value=4.4e-15 Score=155.81 Aligned_cols=96 Identities=18% Similarity=0.353 Sum_probs=79.3
Q ss_pred cccchhh--------cccCC----CCCcccceeeeecCCcccccccch------hhhhccceeecCcccccccccccccc
Q 004370 422 ITAGFLL--------KKSSK----TNGWSKRWFVLNEKTGKLGYTKKQ------EERHFRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~--------K~g~~----~~~WkkRWFVL~~~sg~L~YyK~~------~ek~~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
+++|||. |.|.. .++|++|||||+++. |+|||++ .+..+.|.|+|.+|.|..+.+.
T Consensus 12 ~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~--L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~---- 85 (263)
T 3a8p_A 12 RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCT--LLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEH---- 85 (263)
T ss_dssp EEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTE--EEEESSCCC------CCCSEEEECTTCEEEECTTC----
T ss_pred EEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCE--EEEEecCcccccccccCccceEEcCCcEEEECCcC----
Confidence 8999999 66666 789999999999875 9999984 5678999999999988754322
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++.++|.|.++. .++|+|.|+|.+|+++|+.+|+.++..
T Consensus 86 ----------~kk~~~F~I~t~~--------~r~y~f~A~s~ee~~~Wi~aI~~a~~~ 125 (263)
T 3a8p_A 86 ----------PKKEHVFCLSNSC--------GDVYLFQATSQTDLENWVTAIHSACAS 125 (263)
T ss_dssp ----------SSCSSEEEEECTT--------SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCEEEEEcCC--------CcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 1267999999863 589999999999999999999887764
No 55
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.51 E-value=6.5e-15 Score=162.41 Aligned_cols=102 Identities=21% Similarity=0.382 Sum_probs=80.9
Q ss_pred cccchhhcccCCC-CCcccceeeeecCCcccccccchhhhhccceeecCccccc-cccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKT-NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIE-EVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~-~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~-~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
+++|||.|+|+.. ++||+|||||++. .|+|||++.+..++|.|+|..+... .+....+ ... ...++.++
T Consensus 270 ~k~G~L~K~g~~~~k~WKkRwFVL~~~--~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~-~~~------~~~~~~~~ 340 (386)
T 3lju_X 270 LKEGYMEKTGPKQTEGFRKRWFTMDDR--RLMYFKDPLDAFARGEVFIGSKESGYTVLHGFP-PST------QGHHWPHG 340 (386)
T ss_dssp SEEEEEEECCTTSCSCCEEEEEEEETT--EEEEESSTTCSBCSEEEECCCGGGTCEEEESCC-TTC------CSCCSCEE
T ss_pred ceeeeEEEECCCCCCCCcccEEEEECC--EEEEEecCCCcccceEEEeecceeeeeecccCC-ccc------cccCCCcE
Confidence 8899999999887 8999999999965 5999999999999999999665432 2211110 000 00123699
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.|.+++ |+|+|+|+|++|+++|+.+|+.++..
T Consensus 341 F~I~t~~---------rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 341 ITIVTPD---------RKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp EEEECSS---------CEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred EEEEeCC---------eEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 9999985 99999999999999999999998874
No 56
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.51 E-value=4.6e-15 Score=152.19 Aligned_cols=95 Identities=23% Similarity=0.406 Sum_probs=81.0
Q ss_pred CccccchhhcccCCC-----CCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccC
Q 004370 420 GEITAGFLLKKSSKT-----NGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 420 ~~i~~GwL~K~g~~~-----~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
..+++|||.|+|... +.|++|||||++. .|+||+++.+..++|.|+|.+|.+... . .
T Consensus 57 ~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~--~L~Yyk~~~~~~~~g~I~L~~~~~v~~--~--------------~ 118 (228)
T 3tfm_A 57 EALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQS--KLMYFENDSEEKLKGTVEVRSAKEIID--N--------------T 118 (228)
T ss_dssp CSSEEEEEEECGGGCSSSCGGGCEEEEEEECSS--EEEEESSTTCCSEEEEEEGGGCSEEEE--E--------------T
T ss_pred CcceEEEEEEECCCcCCcccCCceEEEEEEeCC--EEEEEeCCCCcceeEEEEcCCCEEecc--C--------------C
Confidence 348999999998764 8999999999975 599999999999999999999875321 1 1
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+.++|.|.++. |+|+|.|+|.+|++.|+.+|+.++..
T Consensus 119 ~k~~~F~I~t~~---------r~~~l~A~s~~e~~~Wv~aL~~~i~~ 156 (228)
T 3tfm_A 119 NKENGIDIIMAD---------RTFHLIAESPEDASQWFSVLSQVHSS 156 (228)
T ss_dssp TTTSEEEEECSS---------CEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEcCC---------cEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 257899998874 89999999999999999999988863
No 57
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.50 E-value=7.3e-15 Score=137.96 Aligned_cols=96 Identities=17% Similarity=0.266 Sum_probs=78.0
Q ss_pred cccchhhcccCC--CCCcccceeeeecCCcccccccchh---------hhhccceeecCccccccccccccccCchhhhh
Q 004370 422 ITAGFLLKKSSK--TNGWSKRWFVLNEKTGKLGYTKKQE---------ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKK 490 (758)
Q Consensus 422 i~~GwL~K~g~~--~~~WkkRWFVL~~~sg~L~YyK~~~---------ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~ 490 (758)
++..|+.|.|.+ .++|++|||||++++ |+||+... +++|.|.|+|+||.|+..+..
T Consensus 7 L~rk~llK~G~k~~~ksWkr~W~vL~g~~--L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~~----------- 73 (126)
T 2dtc_A 7 LRRKTLLKEGRKPALSSWTRYWVVLSGAT--LLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDP----------- 73 (126)
T ss_dssp EEEEEEEBTTBCCSSCCCEEEEEEEETTE--EEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCCT-----------
T ss_pred eeeeehhhcCCcccccCcccEEEEEeCCE--EEEEcccccccccccccccCCCceEEeCCCEEEecCCC-----------
Confidence 444555566765 689999999999986 99999764 668999999999999843321
Q ss_pred cccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 491 QAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 491 np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++++|.|.+++ ....|.|.|+|+++++.|+++|+.++..
T Consensus 74 ----~~~~~F~L~~~~-------~G~~Y~fqA~s~~~~~~W~~ai~~a~~~ 113 (126)
T 2dtc_A 74 ----EHPDIFQLNNPD-------KGNVYKFQTGSRFHAILWHKHLDDACKS 113 (126)
T ss_dssp ----TSTTEEEEECTT-------SCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred ----CCCCEEEEeeCC-------CCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence 267899999874 2478999999999999999999998875
No 58
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.50 E-value=8e-15 Score=153.95 Aligned_cols=92 Identities=21% Similarity=0.414 Sum_probs=76.9
Q ss_pred cccchhhcccCCCCCcccceeeeecC-----Ccccccccchhh-----hhccceeecCccc-cccccccccccCchhhhh
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEK-----TGKLGYTKKQEE-----RHFRGVVTLEECY-IEEVVEDEDAKSSKDKKK 490 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~-----sg~L~YyK~~~e-----k~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~ 490 (758)
+++|||.|+ ++||+|||||.++ ...|+|||++.+ ..++|+|+|.+|. |....+
T Consensus 11 ~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~------------ 74 (264)
T 1qqg_A 11 RKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRAD------------ 74 (264)
T ss_dssp EEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECC------------
T ss_pred cEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccC------------
Confidence 899999998 6899999999987 237999999998 6899999999886 332211
Q ss_pred cccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 491 QAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 491 np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.++.++|.|.+++ |+|+|.|+|.+|+++|+.+|+.++..
T Consensus 75 ---~~~~~~F~I~t~~---------rty~l~A~se~e~~~Wi~aL~~~~~~ 113 (264)
T 1qqg_A 75 ---SKNKHLVALYTRD---------EHFAIAADSEAEQDSWYQALLQLHNR 113 (264)
T ss_dssp ---SSCSSEEEEEESS---------CEEEEECSSHHHHHHHHHHHHHHC--
T ss_pred ---CCCCcEEEEEECC---------EEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 2367899999875 99999999999999999999988876
No 59
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.49 E-value=1.8e-13 Score=143.02 Aligned_cols=146 Identities=26% Similarity=0.420 Sum_probs=123.5
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTS 81 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~ 81 (758)
..|+..|+.+.+++||+|++++. ++.+++.+++++.+++.|.++|+|+||+|+++++... .+++.++. ++.
T Consensus 152 ~~~~~~~~~~~~~~il~v~d~~~--~~~~~~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~----~~~~~~~~~~~~-- 223 (299)
T 2aka_B 152 RDMLMQFVTKENCLILAVSPANS--DLANSDALKIAKEVDPQGQRTIGVITKLDLMDEGTDA----RDVLENKLLPLR-- 223 (299)
T ss_dssp HHHHHHHHTSTTEEEEEEEESSS--CGGGCHHHHHHHHHCTTCSSEEEEEECGGGSCTTCCC----HHHHTTCSSCCT--
T ss_pred HHHHHHHHcCCCeEEEEEecCCc--chhhhHHHHHHHHhCCCCCeEEEEEEccccCCCCchH----HHHHhCCcCcCC--
Confidence 36889999999999999999997 9999999999999999999999999999999876532 24676655 555
Q ss_pred CCCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 82 DIPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGL 160 (758)
Q Consensus 82 ~lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I 160 (758)
+||+.|++.| .++ ..+-..+.++...|.+||.... |.....++|+..|.+.|.+.|..||+++||.++.+|
T Consensus 224 -~~~~~v~~~S------A~~-~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i 295 (299)
T 2aka_B 224 -RGYIGVVNRS------QKD-IDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295 (299)
T ss_dssp -TCEEECCCCC------CBC-TTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcEEEECCC------hhh-ccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6899999998 333 3444678888888999997765 655568999999999999999999999999999999
Q ss_pred HHhH
Q 004370 161 QGKS 164 (758)
Q Consensus 161 ~~~l 164 (758)
+++|
T Consensus 296 ~~~~ 299 (299)
T 2aka_B 296 QSQL 299 (299)
T ss_dssp HHHC
T ss_pred HhhC
Confidence 8764
No 60
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.48 E-value=1.4e-14 Score=151.91 Aligned_cols=109 Identities=14% Similarity=0.217 Sum_probs=83.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
.++|||+|+|...++|++|||||.+.. |+||+++.+..++|.|+|.++.+..+.... ..+ + .+...+.++|.
T Consensus 169 ~~~G~L~k~~~~~k~WkkR~fvL~~~~--L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~---~~~-~--~~~~~~~~~F~ 240 (291)
T 3tca_A 169 ELEGALYLKEDGKKSWKRRYFLLRASG--IYYVPKGKTKTSRDLACFIQFENVNIYYGI---QCK-M--KYKAPTDHCFV 240 (291)
T ss_dssp CCEEEEEEECTTSSCEEEEEEEECSSE--EEECCTTCCSSTTTCEEEEEGGGCEEEEEC---SHH-H--HHCCSSSCEEE
T ss_pred ceEEEEEEeCCCCCCceEEEEEEeCCE--EEEEecCccccccCceeeccceeEEEEecC---ccc-c--ccCCCCCeEEE
Confidence 689999999998999999999999764 999999999999999999766544332211 000 0 01123679999
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.++. .....+++|+|+|+|++|+..|+++||.+.+.
T Consensus 241 i~~~~---~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g 277 (291)
T 3tca_A 241 LKHPQ---IQKESQYIKYLCCDDARTLSQWVMGIRIAKYG 277 (291)
T ss_dssp EECTT---CCSCCTTSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEcCC---CCCCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence 99874 11234678999999999999999999988764
No 61
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.47 E-value=1.8e-14 Score=158.28 Aligned_cols=96 Identities=17% Similarity=0.335 Sum_probs=78.0
Q ss_pred ccccchhhcccCC---CCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 421 EITAGFLLKKSSK---TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 421 ~i~~GwL~K~g~~---~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
.+++|||.|+|.. .+.|++|||||.+. .|+||++ .+..+.|.|+|.+|.|..+++. .+.
T Consensus 278 ~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~--~L~y~k~-~~~~~~~~i~l~~~~v~~~~~~---------------~r~ 339 (385)
T 2q13_A 278 TRKAGYLNARNKTGLVSSTWDRQFYFTQGG--NLMSQAR-GDVAGGLAMDIDNCSVMAVDCE---------------DRR 339 (385)
T ss_dssp SCCEEEEEEC--------CCEEEEEEEETT--EEEEECS-SCSSCEEEEECTTCEEEEECCT---------------TCS
T ss_pred ccEEEEEEEecCCCCCcCCceeEEEEEECC--EEEEecC-CCcCCCceEEccceEEEecccc---------------CCC
Confidence 3899999999754 34799999999965 5999999 5677889999999998755422 267
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
++|.|.+++ ..++|+|.|+|.+|+++|+.+|+.++.+
T Consensus 340 ~~F~i~t~~-------~~~~~~l~A~s~~e~~~Wi~ai~~~~~~ 376 (385)
T 2q13_A 340 YCFQITSFD-------GKKSSILQAESKKDHEEWICTINNISKQ 376 (385)
T ss_dssp SEEEEECTT-------SCBCCCEECSSHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEeCC-------CCeEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999984 1389999999999999999999998876
No 62
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.47 E-value=9.5e-13 Score=145.60 Aligned_cols=95 Identities=21% Similarity=0.346 Sum_probs=79.0
Q ss_pred cccchhhcc---cCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKK---SSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~---g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
.++|||+|+ |+..+.|+||||||.+. .|+||+.. +..+.+.|+|.+|.|...+.. .+.+
T Consensus 302 ~k~G~L~k~~~~g~~~~~W~rrwfvl~~~--~l~y~~~~-~~~~~~~~~l~~~~v~~~~~~---------------~r~~ 363 (407)
T 4h8s_A 302 QKAGYLNLRNKTGLVTTTWERLYFFTQGG--NLMCQPRG-AVAGGLIQDLDNCSVMAVDCE---------------DRRY 363 (407)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEECSS--CEECCCTT-CSSCCCCBCSSCCEEEEECCT---------------TCSS
T ss_pred eeeceeeeeccCCCCCCCceEEEEEEECC--EEEEEeCC-CCCCCeEEECCceEEEECCCC---------------CCCc
Confidence 899999988 55677899999999965 59999865 455789999999998754432 2679
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|.|.+++ ..++|+|.|+|++|+++|+.+|++++..
T Consensus 364 cF~i~~~~-------~~~~~~l~A~s~~e~~~Wi~ai~~a~~~ 399 (407)
T 4h8s_A 364 CFQITTPN-------GKSGIILQAESRKENEEWICAINNISRQ 399 (407)
T ss_dssp EEEEECTT-------SSCCEEEECSSSHHHHHHHHHHHHHHSC
T ss_pred eEEEEecC-------CCceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 99999985 2478999999999999999999988864
No 63
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.45 E-value=2.8e-13 Score=143.05 Aligned_cols=155 Identities=25% Similarity=0.391 Sum_probs=125.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHcCCC-CCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLLNQG-PPKTSD 82 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~nk~-pl~~~~ 82 (758)
.++..|+...++|||+|.+++. ++.+++.+.+++.+++.|.++|.|+||+|+++.+... .+.+.++. +++
T Consensus 159 ~~~~~~~~~~d~iilvvd~~~~--~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~~~----~~~~~~~~~~~~--- 229 (315)
T 1jwy_B 159 RMVMAYIKKQNAIIVAVTPANT--DLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGTDA----MEVLTGRVIPLT--- 229 (315)
T ss_dssp HHHHHHHHSTTEEEEEEEESSS--CSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSCCC----HHHHTTSSSCCT---
T ss_pred HHHHHHHcCCCeEEEEEEecCc--chhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcchHH----HHHHhCCCccCC---
Confidence 5788999999999999999886 8888888899999999999999999999999876532 34666554 544
Q ss_pred CCEEEEEcCCcccccccccCcccCCCHHHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004370 83 IPWVAVIGQSVAISSVTSSGAAADSSLEAAWRAEVETLKRLL-SGAPQNKLGRVALVDTIAGQIRNRMSLRVPKLLSGLQ 161 (758)
Q Consensus 83 lGy~~V~nRs~~~~~~Q~d~i~~~~s~~~a~~~E~~FF~s~~-~~~~~~r~G~~~L~~~Ls~~L~~hI~~~LP~l~~~I~ 161 (758)
+||+.|.+.+ ..+ ++.+..+.+.+..+.+||..++ |.....++|+..|...|.+.|..||+++||.++.+|+
T Consensus 230 ~~~~~v~~~s------a~~-~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i~ 302 (315)
T 1jwy_B 230 LGFIGVINRS------QED-IIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKVS 302 (315)
T ss_dssp TCEEECCCCC------HHH-HSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEecCC------hhh-hccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6899999998 333 5568899999999999999886 5544678999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHc
Q 004370 162 GKSQIVQDELLKL 174 (758)
Q Consensus 162 ~~l~~~e~eL~~L 174 (758)
..|.++++||++|
T Consensus 303 ~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 303 KMLSDVQGELSTY 315 (315)
T ss_dssp HHTC---------
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999876
No 64
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.44 E-value=2.4e-14 Score=157.92 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=74.6
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|...++|++|||||....+.|+||+++.++.|+|+|.|+++++...+.. .+..+.|.
T Consensus 147 ~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~~--------------~~~~~~f~ 212 (386)
T 3lju_X 147 YREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAK--------------IGHPHGLQ 212 (386)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHHH--------------HTSTTCEE
T ss_pred ccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEcccc--------------cCCCceEE
Confidence 8999999999999999999999954445799999999999999999999865532211 12567788
Q ss_pred EeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 502 ITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
|.... -...|+|+|.|+|.+|+++|+.+||++..
T Consensus 213 I~~~~-----~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~ 246 (386)
T 3lju_X 213 VTYLK-----DNSTRNIFIYHEDGKEIVDWFNALRAARF 246 (386)
T ss_dssp EEEEE-----TTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEec-----CCCceEEEEEcCCHHHHHHHHHhhhhccc
Confidence 76110 01249999999999999999999988744
No 65
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.44 E-value=4.3e-14 Score=135.74 Aligned_cols=98 Identities=28% Similarity=0.475 Sum_probs=80.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh---------h-------------------------hhc-----
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE---------E-------------------------RHF----- 462 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~---------e-------------------------k~~----- 462 (758)
++.|||+|+++..+.|++|||||+++ +|+|++... + +.+
T Consensus 2 ~k~G~L~~~~~~~~~w~~~~fvL~~~--~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILYLEDPVNHEWYPHYFVLTSS--KIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEETT--EEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEEeecCCCCCceEeEEEEECC--EEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 68999999999999999999999977 599988111 0 111
Q ss_pred ----------cceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHH
Q 004370 463 ----------RGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWL 532 (758)
Q Consensus 463 ----------kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv 532 (758)
+|+|.|.+|.|+..+.+. .++.++|+|.++.+ ++++|+|.|+|++|+.+|+
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~-------------~~~~~vF~I~~~~~------~~~~~~laAds~Eem~dW~ 140 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGK-------------NNRLFVFSISMPSV------AQWSLDVAADSQEELQDWV 140 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCS-------------SSCSCEEEEECTTT------SSCCEEEEESSHHHHHHHH
T ss_pred cccccccccccceEecCccEEEeccCCC-------------CCCceEEEEeCCCC------CCceEEEEeCCHHHHHHHH
Confidence 799999999998765331 23789999998852 4789999999999999999
Q ss_pred HhhHHHHh
Q 004370 533 NKLRVVIQ 540 (758)
Q Consensus 533 ~aiRa~i~ 540 (758)
.+||.++.
T Consensus 141 kaIreaa~ 148 (150)
T 2fjl_A 141 KKIREVAQ 148 (150)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99988775
No 66
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.43 E-value=4.4e-14 Score=131.52 Aligned_cols=96 Identities=22% Similarity=0.311 Sum_probs=77.6
Q ss_pred cccchhhcc----cCC---CCCcccceeeeecCCcccccccchhhh------------hccceeecCccccccccccccc
Q 004370 422 ITAGFLLKK----SSK---TNGWSKRWFVLNEKTGKLGYTKKQEER------------HFRGVVTLEECYIEEVVEDEDA 482 (758)
Q Consensus 422 i~~GwL~K~----g~~---~~~WkkRWFVL~~~sg~L~YyK~~~ek------------~~kG~I~L~~~~v~~~~~~~~~ 482 (758)
.++|||.++ +++ ..+|++|||||++.. |+|||++.+. .+.+.|+|.+|.+.....+.
T Consensus 9 ~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~--L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~-- 84 (124)
T 3pp2_A 9 DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGV--LTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDK-- 84 (124)
T ss_dssp CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTE--EEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGG--
T ss_pred EEEEEEEEEEeccCCccCCCCCceEEEEEEECCE--EEEEecCccccccCccCcccccCCcceEEcCCCEEEeccccc--
Confidence 799999887 222 358999999999865 9999998765 46799999999886543111
Q ss_pred cCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 483 KSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 483 ~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+++++|.|.+++ .+.|.|.|+|.+|+.+|+.+|+.+|.
T Consensus 85 -----------~krk~vF~l~t~~--------~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 85 -----------SSRKNVLELRSRD--------GSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp -----------CSSSSEEEEECTT--------SCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred -----------CCCceEEEEECCC--------CCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 2368999999874 58999999999999999999998874
No 67
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=7e-13 Score=125.29 Aligned_cols=99 Identities=21% Similarity=0.382 Sum_probs=77.9
Q ss_pred cccchhhcccCC---CCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSSK---TNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~~---~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
..++||...+++ .++||+|||||.+.. |+|||++++. +|.|.|+|++|+|..-... ...
T Consensus 10 el~~~l~~~~pkk~tlK~~KrrWFvlk~~~--L~YyK~kee~~~ePig~I~L~gceV~pd~~~--------------~~~ 73 (137)
T 2ys3_A 10 ELKDHLRIFRPRKLTLKGYRQHWVVFKETT--LSYYKSQDEAPGDPIQQLNLKGCEVVPDVNV--------------SGQ 73 (137)
T ss_dssp CEECCCEECCTTSCCSSSSCCCEEEECSSC--EEEESSTTTTTSCCSCCBCTTTCEEEECCBG--------------GGT
T ss_pred chhHHHHhhCccccccccceeEEEEEeCCE--EEEECCchhccCCCceEEECCCCEEeccccc--------------cCC
Confidence 567999888765 457999999999986 9999999987 9999999999997643211 125
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+.|++..|.. ...++|.|.|+|++++.+|++++|-+...
T Consensus 74 kf~ikl~iPs~-----~g~r~y~l~cdsEeqy~~WMaA~rlAskg 113 (137)
T 2ys3_A 74 KFCIKLLVPSP-----EGMSEIYLRCQDEQQYARWMAGCRLASKG 113 (137)
T ss_dssp BEEEEEEEECS-----SSEEEEEEEESSHHHHHHHHHHHHHHHTS
T ss_pred ceEEEEEccCC-----CCceEEEEECCCHHHHHHHHHHHHHhccC
Confidence 67777776521 12489999999999999999999866653
No 68
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.35 E-value=3.9e-13 Score=124.56 Aligned_cols=105 Identities=21% Similarity=0.426 Sum_probs=77.1
Q ss_pred ccchhhc--ccCCCC-CcccceeeeecCCcccccccchhhh---hccceeecCccc-cccccccccccCchhhhhccc-C
Q 004370 423 TAGFLLK--KSSKTN-GWSKRWFVLNEKTGKLGYTKKQEER---HFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAE-K 494 (758)
Q Consensus 423 ~~GwL~K--~g~~~~-~WkkRWFVL~~~sg~L~YyK~~~ek---~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~-~ 494 (758)
.+|||.+ +|+..+ +|++|||||++. +|+||+++.++ .+.|+|+|+.+. |+.+..+.. . +.+ +
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~--kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~-i-------~~~~~ 72 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSK--KILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDV-Y-------RADAK 72 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETT--EEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTC-S-------SSCTT
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECC--EEEEEECCCCcccCCceEEEECcccEEEEEcccccc-c-------ccccc
Confidence 5899985 777777 999999999976 59999998876 889999996543 455543210 0 111 2
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
..+++|+|.+.... -...++|+|.|+|++|++.|+.+|++.|.
T Consensus 73 ~~p~iF~I~~~~~~---~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 73 EIPRIFQILYANEG---ISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp TGGGEEEEEECSSS---STTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cCCcEEEEEeCCCC---CCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 25789999864200 01138999999999999999999987764
No 69
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.24 E-value=1.7e-12 Score=143.93 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=72.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFK 501 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~ 501 (758)
+++|||.|+|+..++||+|||||+.+ |.|+|||++.++.++|.|+|.++.+....... ++..+.++|.
T Consensus 7 ~keG~L~K~g~~~k~Wk~r~fvL~~~-~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~-----------~~~~~~~~f~ 74 (446)
T 4ejn_A 7 VKEGWLHKRGEYIKTWRPRYFLLKND-GTFIGYKERPQDVDQREAPLNNFSVAQCQLMK-----------TERPRPNTFI 74 (446)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEETT-SBEEEESSCC-------CCCGGGBCTTCEEEE-----------ECSSSTTEEE
T ss_pred EEEeeEEeeccccccccceEEEEeeC-CEEEEEecCCCCCccCcccccCccccceeecC-----------CCCCCCceeE
Confidence 89999999999999999999999732 46999999999999999999887764322110 1123567899
Q ss_pred EeccCcchhhhhhhhhh---hhhccChHHHHHHHHhhHHHHhh
Q 004370 502 ITSKVPYKTVLKAHSAL---LLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 502 I~t~~~~k~v~k~~r~~---~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.+++ .+.+ .+.+++.+++++|+.+|+.++..
T Consensus 75 I~~~~--------~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 75 IRCLQ--------WTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp EEEEE--------TTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred EEcCC--------CceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 98764 1233 68899999999999999998875
No 70
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=4.2e-11 Score=111.34 Aligned_cols=98 Identities=19% Similarity=0.350 Sum_probs=76.7
Q ss_pred cccchhhccc--CCCCCcccceeeeecCC----cccccccchhhh----hccceeecCccc-ccccccc-ccccCchhhh
Q 004370 422 ITAGFLLKKS--SKTNGWSKRWFVLNEKT----GKLGYTKKQEER----HFRGVVTLEECY-IEEVVED-EDAKSSKDKK 489 (758)
Q Consensus 422 i~~GwL~K~g--~~~~~WkkRWFVL~~~s----g~L~YyK~~~ek----~~kG~I~L~~~~-v~~~~~~-~~~~s~k~~~ 489 (758)
++.|||+++. ...+.||||||||..++ ..|.||..++.. .++.+|.|.+|. |.+.... ..
T Consensus 13 vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~-------- 84 (127)
T 2d9w_A 13 VKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASS-------- 84 (127)
T ss_dssp SEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSS--------
T ss_pred ccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCC--------
Confidence 8999999996 33456999999998644 368899988753 568999999985 5544322 10
Q ss_pred hcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 490 KQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 490 ~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
| +..+.|.|.|++ |+|.|+|++. |+.+|+.+|-.+.+|
T Consensus 85 --p--k~~~aF~l~T~e---------r~~~laAe~~-E~~~Wi~~ic~~aF~ 122 (127)
T 2d9w_A 85 --P--RDTSAFFLETKE---------RLYLLAAPAA-ERGDWVQAICLLAFS 122 (127)
T ss_dssp --C--SSCEEEEEEESS---------CEEEEEECHH-HHHHHHHHHHHHHTS
T ss_pred --C--CcceEEEEEeCC---------cEEEEEeCcH-HHHHHHHHHHHHhcC
Confidence 1 245899999996 9999999975 899999999888887
No 71
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.12 E-value=2.2e-11 Score=128.55 Aligned_cols=95 Identities=19% Similarity=0.344 Sum_probs=74.8
Q ss_pred cccchhhcc-----c-------CCCCCcccceeeeecCCcccccccchhh------hhccceeecCcccccccccccccc
Q 004370 422 ITAGFLLKK-----S-------SKTNGWSKRWFVLNEKTGKLGYTKKQEE------RHFRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~K~-----g-------~~~~~WkkRWFVL~~~sg~L~YyK~~~e------k~~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
.++|||.++ + .....|++|||||.+.. |+|||++.. ..+.+.|.|.+|.++...+.
T Consensus 12 ~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~--L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~---- 85 (279)
T 3a8n_A 12 RKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCT--LFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEH---- 85 (279)
T ss_dssp SCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTE--ECCBCCC--------CCCSSCCBCCSCEECCCTTS----
T ss_pred eEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCE--EEEEecccccccccccCCCceEeccCcEEEecccc----
Confidence 789999643 1 12468999999999875 999999873 35789999999998743221
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+++++|+|.+++ .+.|.|.|+|.+||+.|+.+|+.++.
T Consensus 86 ----------~kKk~vF~L~t~~--------g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 86 ----------PKKDFVFCLSNSL--------GDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp ----------SSSCSCCCEEETT--------TEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCcEEEEEcCC--------CCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1367899999874 68899999999999999999977665
No 72
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.02 E-value=1.4e-10 Score=121.00 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=80.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccce---eecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGV---VTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~---I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
...|||.+++...++|+||||||++.+ |+||++.+.+.+++. ++|+++.|-.+... + ++..| ...+
T Consensus 133 ~~~G~L~~ke~~~K~WkkRyfvLr~sg--Ly~~~k~~sk~~r~l~~~~~L~~~~vy~~~~~------k-Kk~ka--Pt~~ 201 (256)
T 3hk0_A 133 EIQGFLHVKELGKKSWKKLYVCLRRSG--LYCSTKGTSAAPRHLQLLADLEDSNIFSLIAG------R-KQYNA--PTDH 201 (256)
T ss_dssp EEEEEEEEECTTSSCEEEEEEEEETTE--EEEESSTTCCCGGGEEEEECCTTEEEEEESST------H-HHHCC--SSSE
T ss_pred cceeEEEEecCCCCcceEEEEEEeCCE--EEEEecCCCCccccceEEEEcCCCEEEEeccc------c-cccCC--CCCC
Confidence 678999999877889999999999875 999998887777775 78999888654421 1 11111 2578
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|.|.+... .-..+..++|+|++++++..|+++||.+.+.
T Consensus 202 ~F~ik~~k~---~~~~~~~~~lcaede~~~~~W~~aIr~ak~g 241 (256)
T 3hk0_A 202 GLCIKPNKV---RNETKELRLLCAEDEQTRTSWMTAFRLLKYG 241 (256)
T ss_dssp EEEEEETTC---SSCCTTCEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcccc---cCCCceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 999986531 1123467999999999999999999988764
No 73
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.99 E-value=2e-10 Score=111.23 Aligned_cols=98 Identities=16% Similarity=0.326 Sum_probs=74.5
Q ss_pred cccchhhcccC---CCCCcccceeeeecCCcccccccchhh--hhccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSS---KTNGWSKRWFVLNEKTGKLGYTKKQEE--RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~---~~~~WkkRWFVL~~~sg~L~YyK~~~e--k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
-..+||....+ ..++||+||||+.+.. |+|||++++ .+|.|.|+|.||.|..-... ...
T Consensus 48 eL~dyLk~~~pk~~tLKgyKryWFv~kd~~--LsyYKskEe~~geP~~~I~LrGCEVtpDVnv--------------a~~ 111 (173)
T 4f7h_A 48 ELADYIKVFKPKKLTLKGYKQYWCTFKDTS--ISCYKSKEESSGTPAHQMNLRGCEVTPDVNI--------------SGQ 111 (173)
T ss_dssp CEEEEEEEECCBTTBCCCCEEEEEEEETTE--EEEESCGGGCSSCCSEEEECTTCEEEEEEET--------------TTT
T ss_pred hhHhHHHhhcchhcccccceeEEEEEeCCE--EEEEcCHhHhcCCCceEEecCceEEeccccc--------------ccc
Confidence 34589976544 3689999999999875 999999998 78999999999998632110 114
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
++.|++.-|.+ ...+.++|+|+|+..+..|+++.|=+..
T Consensus 112 Kf~IkL~vP~~-----~gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 112 KFNIKLLIPVA-----EGMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp EEEEEEEEEET-----TEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ceeEEEeccCC-----CCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 45566654421 2357899999999999999999977654
No 74
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=98.98 E-value=2.7e-10 Score=120.42 Aligned_cols=106 Identities=19% Similarity=0.309 Sum_probs=74.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhcc---ceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFR---GVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~k---G~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
...|||++++...+.|+||||||.++. |+||++...+.++ +.++|++|.|-.+... + ++.-| ...+
T Consensus 159 e~~G~L~~k~~~~k~WkkRyfvLr~sg--Lyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~------k-kk~ka--Pt~~ 227 (281)
T 4gmv_A 159 EIEGVLWLKDDGKKSWKKRYFLLRASG--IYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDY------R-NKYKA--PTDY 227 (281)
T ss_dssp CCEEEEEEECTTSSCEEEEEEEECSSC--EEEC---------CCEEEECGGGCEEEEESSH------H-HHTCC--SCSC
T ss_pred ccEEEEEEECCCCCCCeEEEEEEeCCE--EEEEeCCCCCccccceEEEEcCCcEEEEeccc------c-cccCC--CCCc
Confidence 678999999887789999999999876 9999987666564 5568999988765421 1 11111 2578
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|.|.++...+ ..+..++|+|++++++..|+++||-+.+.
T Consensus 228 ~F~ik~~~~~~---~~~~~~~~caede~~~~~Wv~Air~ak~g 267 (281)
T 4gmv_A 228 CLVLKHPQIQK---KSQYIKYLCCDDVRTLHQWVNGIRIAKYG 267 (281)
T ss_dssp EEEEECTTCCS---CCTTCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCccCC---CCCceEEEEeCCHHHHHHHHHHHHHHhhC
Confidence 99999764211 23568999999999999999999988774
No 75
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.87 E-value=7.7e-10 Score=106.16 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=72.4
Q ss_pred cccchhhcccC---CCCCcccceeeeecCCcccccccchhh--hhccceeecCcccccc-ccccccccCchhhhhcccCC
Q 004370 422 ITAGFLLKKSS---KTNGWSKRWFVLNEKTGKLGYTKKQEE--RHFRGVVTLEECYIEE-VVEDEDAKSSKDKKKQAEKG 495 (758)
Q Consensus 422 i~~GwL~K~g~---~~~~WkkRWFVL~~~sg~L~YyK~~~e--k~~kG~I~L~~~~v~~-~~~~~~~~s~k~~~~np~~~ 495 (758)
...+||....+ ..++||+||||+.+.. |+|||+++| .++.+.|+|.||.|.. |.-. +
T Consensus 27 eL~dyLk~~~pkrltLKgfKryWfv~kDt~--LsyYKSkEe~~geP~~~inLrGCEVtPDVnva---------------~ 89 (165)
T 4bbk_A 27 KLADYLKLFRPKKLMLKACKQYWFVFKDTS--IAYFKNKELEQGEPIEKLNLRGCEIVPDVNVS---------------G 89 (165)
T ss_dssp CEEEEEEEEC-------CCEEEEEEEETTE--EEEESSGGGTTSCCSEEEECTTCEEEEEEETT---------------T
T ss_pred hhHhHHHhhcccccccccceeEEEEEeCCE--EEEEcCHHHhcCCCceEEecCccEEecccccc---------------c
Confidence 35589977644 3689999999999765 999999998 6789999999999863 2211 2
Q ss_pred CceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 496 PSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 496 ~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.++.|++.-|.+ ..-..+.|+|+|+.+...|+++.|=+.-
T Consensus 90 ~Kf~ikL~ip~~-----~gm~e~~LrcdsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 90 RKFGIKLLIPVA-----DGMNEVYLRCDHEDQYARWMAACILASK 129 (165)
T ss_dssp TEEEEEEEEEET-----TEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ceeeEEEecCCC-----CcceeeeeecCCHHHHHHHHHHhhhccc
Confidence 466777765421 1246899999999999999999987654
No 76
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.86 E-value=7.8e-10 Score=106.23 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=70.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCc-cccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEE-CYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~-~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
++.|||.|+.+. .||+|||+|++.. ..||-++.....+|.|+|+. |.++.. ....|
T Consensus 53 lk~G~v~KrkGl--~~kkR~liLT~~P--rL~Yvdp~~~~~KGeIpls~~l~ve~k-------------------~~~~F 109 (151)
T 1w1g_A 53 LKMGPVDKRKGL--FARRRQLLLTEGP--HLYYVDPVNKVLKGEIPWSQELRPEAK-------------------NFKTF 109 (151)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEETTT--EEEEEETTTTEEEEEECCCTTCEEEES-------------------SSSEE
T ss_pred EEEEEEEecccC--cceeEEEEEcCCc--eEEEEcCccccccceEecCCCeeEEEc-------------------CCCEE
Confidence 899999996443 3999999999875 89999999999999999964 444421 23489
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.+++ |+|+|.+. ....++|+.+|..++..
T Consensus 110 ~I~Tp~---------RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 110 FVHTPN---------RTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp EEEETT---------EEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred EEECCC---------ceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 999985 99999997 77899999999776653
No 77
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.36 E-value=3.7e-07 Score=84.86 Aligned_cols=100 Identities=12% Similarity=0.216 Sum_probs=77.5
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcc-ccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC-YIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~-~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.+.+.+...|||++|+|+.++ |.||+++.+.++--.|+|.++ .|+...... .-+.....++|
T Consensus 9 lkeGW~VH~t~~d~~rKRHYWrLD~K~--Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~---------~l~~~~~~hcF 77 (125)
T 2coa_A 9 LREGWVVHYSNKDTLRKRHYWRLDCKC--ITLFQNNTTNRYYKEIPLSEILTVESAQNFS---------LVPPGTNPHCF 77 (125)
T ss_dssp SEEEEEEECCSSSCCCEEEEEEECSSE--EEEESSSSCSSCSEEEETTTCCEEEESCCCS---------SSCTTSCCEEE
T ss_pred eecceEEEEccCCccccceeeEecCCe--EEEEecCCCCceeeeeehhHeeccccccccc---------ccCCCCCCceE
Confidence 999999999999999999999999886 999999999999999999654 454332110 00112356999
Q ss_pred EEeccCcchhhhhhhhhhhhhcc-----------ChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAE-----------NMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~Ae-----------S~eE~~~Wv~aiRa~i~~ 541 (758)
.|.|.. .+|++.++ -.+.+..|..+||.++.|
T Consensus 78 Ei~T~~---------~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALmP 120 (125)
T 2coa_A 78 EIVTAN---------ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALMS 120 (125)
T ss_dssp EEECSS---------CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGGG
T ss_pred EEEeCC---------eEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhccC
Confidence 999974 67777653 135689999999999987
No 78
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.22 E-value=1.3e-06 Score=81.54 Aligned_cols=100 Identities=14% Similarity=0.289 Sum_probs=77.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCcc-ccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEEC-YIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~-~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
+++|||.+.+.+...|||++|+|+.++ |.+|+++.+.++--.|+|.++ .|+...... ..+.....|+|
T Consensus 9 lkeGWmVH~t~~d~~rKRHYWrLD~K~--Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~---------~~~~~~~phcF 77 (129)
T 2d9z_A 9 VKEGWMVHYTSRDNLRKRHYWRLDSKC--LTLFQNESGSKYYKEIPLSEILRISSPRDFT---------NISQGSNPHCF 77 (129)
T ss_dssp EEEEEEEEEESSCCCCEEEEEEEESSC--EEEESCSSCCSCCCEECTTTCCEECCTTCCC---------CSSSCSCCCSE
T ss_pred eecceEEEEccCCccccceeeEecCCe--EEEEecCCCCceeceeeHHHhcccccccCcc---------ccCCCCCCceE
Confidence 899999999999889999999999987 999999999988889999664 344332110 00122356999
Q ss_pred EEeccCcchhhhhhhhhhhhhccC---------------hHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAEN---------------MAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS---------------~eE~~~Wv~aiRa~i~~ 541 (758)
.|.|.. .+|++.++. .+....|..+||.++.|
T Consensus 78 Ei~T~~---------~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALmP 124 (129)
T 2d9z_A 78 EIITDT---------MVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMS 124 (129)
T ss_dssp EEECSS---------CEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHHH
T ss_pred EEEECC---------EEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhccC
Confidence 999864 566665432 68899999999998887
No 79
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.67 E-value=7e-05 Score=70.12 Aligned_cols=88 Identities=14% Similarity=0.272 Sum_probs=67.3
Q ss_pred CCCcccceeeeecC--Cc--ccccccchhhhhccceeecCccc-cccccccccccCchhhhhcccCCCceEEEEeccCcc
Q 004370 434 TNGWSKRWFVLNEK--TG--KLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPY 508 (758)
Q Consensus 434 ~~~WkkRWFVL~~~--sg--~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~ 508 (758)
...|+|+||||... .+ .|.||..|+..++|..|++..+. |+....-+ .|| ..++|-|...+
T Consensus 39 ~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LE----------mPD--~~nTFVlK~~n-- 104 (136)
T 1v5m_A 39 TAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLE----------MPE--KDNTFVLKVEN-- 104 (136)
T ss_dssp SCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSS----------SCC--CTTEECCBCTT--
T ss_pred ccchhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccc----------cCC--ccceEEEEecC--
Confidence 45799999999753 22 47899999999999999997652 33322211 144 56788777653
Q ss_pred hhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 509 KTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 509 k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.-.|+|.|.+..++.+|++.||.|+.+
T Consensus 105 ------~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 105 ------GAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp ------SCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ------CcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 348999999999999999999999987
No 80
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.66 E-value=9.6e-06 Score=82.84 Aligned_cols=47 Identities=23% Similarity=0.475 Sum_probs=39.7
Q ss_pred ccccchhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecC
Q 004370 421 EITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLE 469 (758)
Q Consensus 421 ~i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~ 469 (758)
.-+.|||.|+|+..++|++|||||++++ |.||+...+....|.+.-.
T Consensus 21 ~~~~g~l~~~~~~~~~w~~rw~vl~~~~--~~~~~~~~~~~k~G~L~K~ 67 (228)
T 3tfm_A 21 PYFHSFLYMNGGLMNSWKRRWCVLKDET--FLWFRSKQEALKQGWLHNN 67 (228)
T ss_dssp CCEEEEEEECCTTTCCCEEEEEEEETTE--EEEESSCCCSSEEEEEEEC
T ss_pred CceEEEEeecCcccccceEEEEEEeCCE--EEEeccCCCcceEEEEEEE
Confidence 3789999999999999999999999765 9999988776666666543
No 81
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.40 E-value=0.0002 Score=67.52 Aligned_cols=96 Identities=17% Similarity=0.311 Sum_probs=68.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh---hhhccceeecCccccccccccccccCchhhhhcccCCCce
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE---ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSL 498 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~---ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~ 498 (758)
+..|-...+.+....-+.|.|+|=.+. |.|.+... .=..+|.|||.+..|++.++.. ..++
T Consensus 29 i~~s~v~~~~~~~~~~~eR~l~LF~~~--Ll~~s~~~~~~~f~~kgklPL~g~~V~~~ed~~--------------~~~~ 92 (132)
T 1v61_A 29 IFMSQVVMQHGACEEKEERYFLLFSSV--LIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIE--------------GSDC 92 (132)
T ss_dssp SCEEEEEBCCSSSSCCCEEEEEECSSC--EEEEECSSSSSCCEEEEEECTTTCBCSTTCSSS--------------SSCC
T ss_pred EEEeeEEEEEcccCcceEEEEEEcCCe--EEEEEecCCCceEEEEEEEecceeEEEeccccc--------------cCcc
Confidence 444444444323334467777776653 77777433 2245799999999998776532 2678
Q ss_pred EEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 499 IFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 499 ~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+|.|+.+. .+++.+.|.|.+|++.|+.+|+.++..
T Consensus 93 aFeI~g~~--------~~~i~v~~~s~eE~~~Wl~~L~~~i~~ 127 (132)
T 1v61_A 93 MFEITGST--------VERIVVHCNNNQDFQEWMEQLNRLTKS 127 (132)
T ss_dssp CEEEECSS--------SCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred EEEEecCC--------CceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 99999874 488999999999999999999888864
No 82
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.20 E-value=0.00022 Score=72.35 Aligned_cols=93 Identities=23% Similarity=0.390 Sum_probs=68.5
Q ss_pred cccchhhcccCCCCCcccceeeeecCC----c-ccccccchhhhhc----cceeecCcc-ccccccccccccCchhhhhc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKT----G-KLGYTKKQEERHF----RGVVTLEEC-YIEEVVEDEDAKSSKDKKKQ 491 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~s----g-~L~YyK~~~ek~~----kG~I~L~~~-~v~~~~~~~~~~s~k~~~~n 491 (758)
+.+|+...+.++ .||.||+||..-+ + .|.-|||..++.. |..|.|+++ .++..-.
T Consensus 10 v~eg~vk~r~~K--kWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~------------- 74 (224)
T 3ml4_A 10 LVEGQVKLRDGK--KWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALP------------- 74 (224)
T ss_dssp SEEEEEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEE-------------
T ss_pred eEEEeeeeecCC--ceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCcccccc-------------
Confidence 678888766443 7999999998522 2 5789999998644 778999664 3443221
Q ss_pred ccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 492 AEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 492 p~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
-++.++.+.|.+.+ .++.|.++|.+++..|...|+...
T Consensus 75 -ldk~s~TlAIIc~d---------~~~vLAFds~e~l~~W~~~l~~sl 112 (224)
T 3ml4_A 75 -YEGLAHTLAIICLS---------QAVMLGFDSHEAMCAWDTRIRYAL 112 (224)
T ss_dssp -ETTEEEEEEEEESS---------CEEEEECSSHHHHHHHHHHHHHHT
T ss_pred -ccCcccEEEEEecC---------cEEEEEeCCHHHHHHHHHHHhhcc
Confidence 13467889998886 778999999999999999997644
No 83
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.94 E-value=0.00052 Score=62.88 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=65.2
Q ss_pred cccchhhcccCCC-CCcccceeeeecCCcccccccchhhh----hccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSSKT-NGWSKRWFVLNEKTGKLGYTKKQEER----HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~~~-~~WkkRWFVL~~~sg~L~YyK~~~ek----~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
+++|.|.+-.... +.=++++|.|=.+. |.|-+....+ .+...++|+++.|.++.+.. ..
T Consensus 9 v~eG~l~el~~~~~k~~~~v~~FLfND~--Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~--------------~~ 72 (113)
T 1zc3_B 9 VYNGDLVEYEADHMAQLQRVHGFLMNDC--LLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNP--------------PM 72 (113)
T ss_dssp EEEEEEEEEETTTCCEEEEEEEEEESSE--EEEEEEECCTTSCEEEEEEEETTTCEEEEECCBT--------------TB
T ss_pred EEeCcEEEEccccCCCCccEEEEecCCE--EEEEEEeccCcccEEEEEEEEcccCEEEECCCCc--------------cc
Confidence 6778877664322 22234555555443 6666553322 34557899999998876542 25
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+.|.|.+.. +++.+.|+|.+|+.+|+.+|+.++.
T Consensus 73 ~n~f~i~~~~---------~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 73 KDMFKLLMFP---------ESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp SSEEEEEETT---------EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCC---------ceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 7899998764 7899999999999999999988774
No 84
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=96.88 E-value=0.00089 Score=62.60 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=59.3
Q ss_pred ccceeeeecCCcccccccc--hhhhhccceeecCccc-cccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhh
Q 004370 438 SKRWFVLNEKTGKLGYTKK--QEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKA 514 (758)
Q Consensus 438 kkRWFVL~~~sg~L~YyK~--~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~ 514 (758)
+.|+|+|+++ ++..||.+ .......+.|+|++++ |+.+..... ...+-.+....++|.|...+ .
T Consensus 29 k~r~f~l~~~-~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~-----~~~~~~~~~~~~~FsIiy~~-------~ 95 (131)
T 1mai_A 29 RERFYKLQED-CKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEG-----LEKFARDIPEDRCFSIVFKD-------Q 95 (131)
T ss_dssp EEEEEEECTT-SSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHH-----HHHHCTTSCGGGEEEEEESS-------S
T ss_pred eeEEEEECCC-CCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHH-----HHhhhhcCCccceEEEEECC-------C
Confidence 5677778765 57778852 2233467899997754 443321110 01110011246799998764 2
Q ss_pred hhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 515 HSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 515 ~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+++.|.|+|.+|.+.|+..|++.+..
T Consensus 96 ~k~LdlvA~s~~e~~~Wv~gL~~L~~~ 122 (131)
T 1mai_A 96 RNTLDLIAPSPADAQHWVQGLRKIIHH 122 (131)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999998865
No 85
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.00055 Score=75.66 Aligned_cols=92 Identities=24% Similarity=0.365 Sum_probs=65.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh--hccceeecCccccccccccccccCchhhhhcccCCCceE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER--HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLI 499 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek--~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~ 499 (758)
++.|+|.+.+++ .++.|||.|=.+- |.|.|..... .+++.|+|.++.|.+...+ ..++.
T Consensus 245 i~~g~l~~~~~~--~~~~r~~fLF~d~--Ll~~k~~~~~~y~~k~~i~L~~l~v~~~~~~---------------~~~~~ 305 (434)
T 3mpx_A 245 LKEGTLMKVTGK--NRRPRHLFLMNDV--LLYTYPQKDGKYRLKNTLAVANMKVSRPVME---------------KVPYA 305 (434)
T ss_dssp EECCEEEEEETT--EEEEEEEEEESSE--EEEEEECTTSCEEEEEEEEC-----CCCCCT---------------TSCSE
T ss_pred EecceEEEEeCC--CceEEEEEEECCE--EEEEEecCCCeEEEEEEEEcCCcEEEecCCC---------------CCCee
Confidence 788999876543 4789999998774 8888754332 3578999999988754322 25789
Q ss_pred EEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 500 FKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 500 F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
|.|.++. ++|+|.|.|.+|++.|+.+|+.++..
T Consensus 306 f~i~~~~---------~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 306 LKIETSE---------SCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp EEEECSS---------CEEEEECSSHHHHHHHHHHHHHC---
T ss_pred EEEecCC---------eEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 9998874 68999999999999999999888864
No 86
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=96.16 E-value=0.0032 Score=67.67 Aligned_cols=91 Identities=16% Similarity=0.226 Sum_probs=69.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh-----------hhccceeecCccccccccccccccCchhhhh
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE-----------RHFRGVVTLEECYIEEVVEDEDAKSSKDKKK 490 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e-----------k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~ 490 (758)
++.|.|.+.| .++.|+|.|=.+- |.|-|.... -..++.|+|.++.|.++.++.
T Consensus 248 i~eG~l~~~g----~~~~~~~fLF~d~--Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~---------- 311 (354)
T 1dbh_A 248 IMEGTLTRVG----AKHERHIFLFDGL--MICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN---------- 311 (354)
T ss_dssp EEEEEEEETT----CSSCEEEEEESSE--EEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSS----------
T ss_pred EEEeeEEEEe----cCceEEEEEeCCE--EEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCccc----------
Confidence 7888888774 5788999887663 767665421 134689999999988765431
Q ss_pred cccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 491 QAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 491 np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
..++.|.|.+++ .+.|.|.|.|.+++..|+.+|+.+..
T Consensus 312 ----~~~~~F~i~~~~--------~~~~~l~a~s~~ek~~W~~~i~~~~~ 349 (354)
T 1dbh_A 312 ----EYKHAFEIILKD--------ENSVIFSAKSAEEKNNWMAALISLQY 349 (354)
T ss_dssp ----SCCSEEEECCTT--------SCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred ----ccCccEEEecCC--------CCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 256899998763 36899999999999999999987665
No 87
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=96.15 E-value=0.0038 Score=69.78 Aligned_cols=103 Identities=17% Similarity=0.256 Sum_probs=74.4
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh----hhhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE----ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~----ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
++.|.|.+.+...+.++.|+|.|=.+. |.|-|... .-..++.|+|.++.|.++.++.... .+ ....
T Consensus 335 i~~G~l~~~~~~~~~~~~r~~fLF~d~--Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~------~~--~~~~ 404 (466)
T 2pz1_A 335 IYSGELTRVTQPQAKSQQRMFFLFDHQ--LIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRD------LH--VSIK 404 (466)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEETTE--EEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCS------SC--CCBC
T ss_pred EEeeeEEEEecCCCCeeEEEEEEECCE--EEEEEeccccCCceEEeeeeeccceEEEeCCCCcccc------cc--cccc
Confidence 788988877655566889999997764 77776532 1235789999999998776542100 00 1245
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+.|.|.++. ..+.|.|.|.|.+++..|+.+|+.++..
T Consensus 405 ~~F~i~~~~-------~~~~~~l~a~s~~eK~~W~~~i~~a~~~ 441 (466)
T 2pz1_A 405 NAFRLHRGA-------TGDSHLLCTRKPEQKQRWLKAFAREREQ 441 (466)
T ss_dssp EEEEEECSS-------SCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEeCC-------CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 789998763 2468999999999999999999887764
No 88
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=96.12 E-value=0.0035 Score=72.36 Aligned_cols=101 Identities=17% Similarity=0.212 Sum_probs=73.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh-hhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE-RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e-k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
++.|.|.+.....+.++.|||.|=.+- |.|-|.... -.+++.|+|.++.|++..++.. . +...++.|
T Consensus 407 l~~G~l~~~~~~~~~~~~r~~fLF~d~--Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~--~--------~~~~~~~f 474 (587)
T 3ky9_A 407 KIDGELKITSVERRSKMDRYAFLLDKA--LLICKRRGDSYDLKDFVNLHSFQVRDDSSGDR--D--------NKKWSHMF 474 (587)
T ss_dssp EEEEEEEEECSSCCSCEEEEEEEETTE--EEEEEEETTEEEEEEEEEGGGEEEEEC-------C--------CCTTCEEE
T ss_pred EEEeeEEEEeccCCCcceEEEEEECCE--EEEEEecCCEEEeeeeechhhceeeecCCCCc--c--------ccccccee
Confidence 788999887666677899999998764 777765532 2458899999999987654310 0 01256889
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.+.. ..+.|+|.|.|.+|++.|+.+|+.++..
T Consensus 475 ~i~~~~-------~~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 475 LLIEDQ-------GAQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp EEEETT-------C---CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcC-------CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 999863 2478999999999999999999888875
No 89
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=96.08 E-value=0.005 Score=61.03 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=64.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhh-------ccceeecCccccccccccccccCchhhhhcccC
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERH-------FRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEK 494 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~-------~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~ 494 (758)
+++|-|..+.... .|+.++++|=.+- |.|-+...++. ...+|+|.++.|+++..+
T Consensus 72 l~eG~L~~k~~~~-~~~d~~~fLf~D~--Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~d--------------- 133 (185)
T 2lg1_A 72 VRDGSVFLKNAAG-RLKEVQAVLLTDI--LVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE--------------- 133 (185)
T ss_dssp EEEEEEEEECTTC-CEEEEEEEEESSE--EECCEEETTEEECCCCSSSCSEEESSSCEEECCSSC---------------
T ss_pred eeeceEEEeccCC-CeeeEEEEeecCE--EEEEEecCCEEEEEcccCCCCeEeecceEEeccCCC---------------
Confidence 7888887554333 6899999997663 66665433322 135788898888765432
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
....|-|.+.. ...+.|+|.|.|.+|+..|+.+|+.++..
T Consensus 134 -~~~~fli~~~~------~g~~~yel~a~s~~er~~W~~~I~~Ai~~ 173 (185)
T 2lg1_A 134 -EKGLFLISMGM------TDPEMVEVHASSKEERNSWIQIIQDTINT 173 (185)
T ss_dssp -SSEEEEECCSS------SCCCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEEEecC------CCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 23345554321 01378999999999999999999887764
No 90
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=96.06 E-value=0.001 Score=74.78 Aligned_cols=91 Identities=16% Similarity=0.256 Sum_probs=0.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh-------------------hccceeecCccccccccccccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER-------------------HFRGVVTLEECYIEEVVEDEDA 482 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek-------------------~~kG~I~L~~~~v~~~~~~~~~ 482 (758)
+++|.|.|. ++++.|||.|=.+. |.|.+..... -.++.|+|+++.|.+..+..
T Consensus 254 i~eG~l~~~----~~~~~~~~fLF~d~--Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~~-- 325 (510)
T 3jzy_A 254 LHSGKLYKT----KSNKELHGFLFNDF--LLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPS-- 325 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeceEEEc----CCCcEEEEEcccce--eEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCCC--
Confidence 778888765 34789999998764 7777633322 12677889999887764431
Q ss_pred cCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 483 KSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 483 ~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
...+.|.|.++. ++|+|.|.|.+|+..|+.+|+.++..
T Consensus 326 ------------~~~~~F~i~~~~---------~~~~l~a~s~~ek~~W~~~i~~ai~~ 363 (510)
T 3jzy_A 326 ------------SDEPVFHISHID---------RVYTLRTDNINERTAWVQKIKAASEQ 363 (510)
T ss_dssp -----------------------------------------------------------
T ss_pred ------------ccccceeeeccc---------eeEEeccCCHHHHHHHHHHHHHHHHH
Confidence 256789998874 78999999999999999999887765
No 91
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=96.02 E-value=0.0034 Score=68.99 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=73.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh----hhccceeecCccccccccccccccCchhhhhcccCCCc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE----RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPS 497 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e----k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~ 497 (758)
++.|.|.+.+...+.++.|+|.|=.+. |.|-|.... -..++.|+|.++.|.++.++.... .+ ....
T Consensus 258 i~~G~l~~~~~~~~k~~~r~~fLF~d~--Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~------~~--~~~~ 327 (402)
T 2dfk_A 258 IYTGEMAWIYQPYGRNQQRVFFLFDHQ--MVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDD------FN--VSMK 327 (402)
T ss_dssp EEEEEEEEESSTTCCCEEEEEEEETTE--EEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSS------SC--CEES
T ss_pred EEeceEEEEeccCCceEEEEEEeeCCE--EEEEEeccccCCceEEeeeeeccceEEEecCCCCccc------cc--cccc
Confidence 788988877654556888999887664 777765321 235789999999988776542100 00 0135
Q ss_pred eEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 498 LIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 498 ~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
+.|.|.++. ..+.|.|.|.|.+++..|+.+|+.++..
T Consensus 328 ~~F~i~~~~-------~~~~~~l~a~s~~eK~~Wi~~i~~a~~~ 364 (402)
T 2dfk_A 328 NAFKLHNKE-------TEEVHLFFAKKLEEKIRWLRAFREERKM 364 (402)
T ss_dssp SEEEEEESS-------SSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECC-------CCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 689998763 2468999999999999999999876654
No 92
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=95.94 E-value=0.0049 Score=67.62 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=71.1
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh-hccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER-HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek-~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
++.|.|.+.....+.++.|+|.|=.+- |.|-|....+ ..++.|+|.++.|.+..++.. .....++.|
T Consensus 235 i~~G~l~~~~~~~~~~~~~~~fLF~d~--Ll~~k~k~~~y~~k~~i~l~~~~v~~~~~~~~----------~~~~~~~~F 302 (406)
T 2vrw_B 235 KIDGELKITSVERRSKTDRYAFLLDKA--LLICKRRGDSYDLKASVNLHSFQVRDDSSGER----------DNKKWSHMF 302 (406)
T ss_dssp EEEEEEEEECSSCCSCEEEEEEEESSE--EEEEEEETTEEEEEEEEETTTEEEEC------------------CTTCEEE
T ss_pred cccccEEEEecCCCccceEEEEecCCE--EEEEEecCCceEEEEEecccceeeeecCCCCc----------cCCccceee
Confidence 778988877555556889999887663 7777654332 357899999999876654310 001256899
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.|.+.. ..+.|.|.|.|.++++.|+.+|+.++..
T Consensus 303 ~i~~~~-------~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 336 (406)
T 2vrw_B 303 LLIEDQ-------GAQGYELFFKTRELKKKWMEQFEMAISN 336 (406)
T ss_dssp EEEETT-------CSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEEecC-------CCceEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 998642 2367999999999999999999888765
No 93
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=95.57 E-value=0.0084 Score=65.17 Aligned_cols=95 Identities=23% Similarity=0.326 Sum_probs=64.9
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh------------------hccceeecCcccccccccccccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER------------------HFRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek------------------~~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
++.|.|.++... +.++.|+|.|=.+- |.|.|...++ ..++.|+|.++.|+++..+
T Consensus 258 i~eG~l~~~~~~-~~~~~~~~fLF~d~--Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d---- 330 (385)
T 1txd_A 258 IHEGPLVWKVNR-DKTIDLYTLLLEDI--LVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD---- 330 (385)
T ss_dssp EEEEEEEEESSS-SCBCCEEEEEESSE--EEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-----
T ss_pred EEECcEEEEcCC-CCeEEEEEEecCCe--eEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccccccC----
Confidence 788888755432 45888998887663 6666643322 2368899988888765321
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
....|.|.... ...+.|.|.|.|.+++..|+.+|+.++..
T Consensus 331 ------------~~~~f~i~~~~------~~~~~~~l~a~s~~ek~~W~~~i~~~i~~ 370 (385)
T 1txd_A 331 ------------NKALFVISMSD------NGAQIYELVAQTVSEKTVWQDLICRMAAS 370 (385)
T ss_dssp ------------CCEEEEEEECS------SCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ------------CceEEEEEEcC------CCceEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 23455555321 12478999999999999999999888775
No 94
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=95.52 E-value=0.0088 Score=64.61 Aligned_cols=95 Identities=19% Similarity=0.248 Sum_probs=65.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhhh------------------ccceeecCcccccccccccccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERH------------------FRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~------------------~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
+++|.|..++.. +.|+.|||.|=.+. |.|.|...++. +..+|+|.++.++++..+
T Consensus 260 i~eG~l~~~~~~-~~~~~~~~fLF~d~--Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~---- 332 (377)
T 3p6a_A 260 VHEGPLTWRVTK-DKAVEVHVLLLDDL--LLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD---- 332 (377)
T ss_dssp EEEEEEEEESSS-SCEEEEEEEEESSE--EEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTTC----
T ss_pred EEECCcEEEecC-CCeEEEEEEeeCCE--EEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccccccc----
Confidence 888998766443 36899999997663 77776443221 134688888877764432
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
....|-|.... .....|+|.|.|.+|++.|++.|+.++..
T Consensus 333 ------------~~~~~~i~~~~------~~~~~~~l~A~s~~ek~~W~~~I~~ai~~ 372 (377)
T 3p6a_A 333 ------------HKAFYVLFTWD------QEAQIYELVAQTVSERKNWCALITETAGS 372 (377)
T ss_dssp ------------TTEEEEEETTC------TTCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ------------cceeEEEecCC------CCCeeEEEecCCHHHHHHHHHHHHHHHHh
Confidence 23455555431 12468999999999999999999998875
No 95
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.40 E-value=0.13 Score=60.73 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
..++..|+.+-+.||+ |++++. .+..++.-.+.+.+...|.++|.|+||+|+.+.+
T Consensus 191 ~~~~~~~i~~aD~vL~-Vvda~~--~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 191 NELSLGYVNNCHAILF-VMRASQ--PCTLGERRYLENYIKGRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHHTHHHHSSSEEEE-EEETTS--TTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGG
T ss_pred HHHHHHHHHhCCEEEE-EEeCCC--ccchhHHHHHHHHHHhhCCCEEEEEECccccccc
Confidence 3577899988775554 556664 5555555455667787888999999999998654
No 96
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=95.34 E-value=0.0093 Score=68.21 Aligned_cols=95 Identities=19% Similarity=0.250 Sum_probs=63.3
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh------------------hccceeecCcccccccccccccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER------------------HFRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek------------------~~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
+++|.|.+++.. +.|+.|||+|=.+. |.|.|...++ .+..+|+|.++.|+++...
T Consensus 413 I~eG~l~~~~~~-~k~~~r~~fLF~D~--LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d---- 485 (536)
T 3odw_A 413 VHEGPLTWRVTK-DKAVEVHVLLLDDL--LLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD---- 485 (536)
T ss_dssp EEEEEEEEESCC----CEEEEEEESSE--EEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTTC----
T ss_pred eeecceEEEecC-CCeeEEEEEEcCCE--EEEEEEcCCeEEEeecccccccccccccccCceeecccceeeccccc----
Confidence 888998776543 36889999997663 6666643321 1245788888888775432
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
....|-|.... +..+.|+|.|.|.+|++.|+..|+.+|..
T Consensus 486 ------------~~~ffli~~~~------~~~~~~~L~A~S~eEK~~W~~~I~~aI~~ 525 (536)
T 3odw_A 486 ------------HKAFYVLFTWD------QEAQIYELVAQTVSERKNWCALITETAGS 525 (536)
T ss_dssp ------------TTEEEEEEC---------CCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ------------CCceEEEecCC------CCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 22344444311 12478999999999999999999999875
No 97
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=95.33 E-value=0.01 Score=64.00 Aligned_cols=95 Identities=24% Similarity=0.261 Sum_probs=64.0
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh------------------hhccceeecCcccccccccccccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE------------------RHFRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e------------------k~~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
++.|.|.+... .+.++.|||.|=.+- |.|.|...+ ...++.|+|.++.|+++..
T Consensus 254 i~~G~l~~~~~-~~~~~~~~~fLF~d~--Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~----- 325 (368)
T 1xcg_A 254 IHEGPLTWRIS-KDKTLDLHVLLLEDL--LVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT----- 325 (368)
T ss_dssp EEEEEEEECCS-SSCCCEEEEEEESSE--EEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS-----
T ss_pred EeecceEeeec-CCCeeEEEEEccccc--HHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccC-----
Confidence 78888876533 345889999887663 666664322 1236789999888876432
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
....|.|.+... .+..+.|.|.|.|.++++.|+.+|+.++.
T Consensus 326 ------------~~~~f~i~~~~~----~g~~~~~~l~a~s~~ek~~W~~~i~~ai~ 366 (368)
T 1xcg_A 326 ------------DKRAFFIICTSK----LGPPQIYELVALTSSDKNTWMELLEEAVR 366 (368)
T ss_dssp ------------CSSEEEEEECCS----SSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ------------CCceEEEEEecC----CCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 123455543310 11137899999999999999999988875
No 98
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=64.76 Aligned_cols=96 Identities=24% Similarity=0.254 Sum_probs=66.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh------------------hhccceeecCcccccccccccccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE------------------RHFRGVVTLEECYIEEVVEDEDAK 483 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e------------------k~~kG~I~L~~~~v~~~~~~~~~~ 483 (758)
++.|.|.+.++. +.|+.|||.|=.+. |.|.|...+ ..+++.|+|.++.|+++..
T Consensus 296 i~eG~l~~~~~~-~~~~~~~~fLF~d~--Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~----- 367 (418)
T 3t06_A 296 IHEGPLTWRISK-DKTLDLHVLLLEDL--LVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT----- 367 (418)
T ss_dssp EEEEEEEECCBT-TBCCEEEEEEESSE--EEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS-----
T ss_pred EEeceEEEEeCC-CCeEEEEEEecCCE--EEEEEEcCCceEEeecccccccCCCcccccCCceechhceeccccc-----
Confidence 788888876543 45889999997664 777764332 1235789999988875542
Q ss_pred CchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 484 SSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 484 s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
....|.|.+.... +..+.|+|.|.|.+|++.|+.+|+.++..
T Consensus 368 ------------~~~~f~l~~~~~~----~~~~~~~l~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 368 ------------DKRAFFIICTSKL----GPPQIYELVALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp ------------CSSEEEEEECCSS----STTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ------------cCceEEEEecCCC----CCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 2235555543200 01268999999999999999999888874
No 99
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=95.18 E-value=0.011 Score=63.10 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=66.8
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhhh------hccceeecCccccccccccccccCc--hhhhhccc
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEER------HFRGVVTLEECYIEEVVEDEDAKSS--KDKKKQAE 493 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek------~~kG~I~L~~~~v~~~~~~~~~~s~--k~~~~np~ 493 (758)
++.|.|.+.. .+.|+|.|=.+- |.|-|..... -.++.|+|.++.|++..++....+. +....+ +
T Consensus 233 i~~G~l~~~~-----~~~~~~fLF~d~--Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~-~ 304 (346)
T 2z0q_A 233 CCHGELKNNR-----GVKLHVFLFQEV--LVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSN-N 304 (346)
T ss_dssp EEEEEEEETT-----SCEEEEEEESSE--EEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSH-H
T ss_pred EEeceeEECC-----CcEEEEEECCCc--EEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccC-C
Confidence 6778887643 267888887663 7777653221 1478899999999877654210000 000000 0
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
....+.|.|.+..+ +..+.|.|.|.|.+++..|+.+|+.++
T Consensus 305 ~~~~~~F~i~~~~~-----~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 305 ERVKNFFRVSFKNG-----SQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp HHTSSEEEEEECCG-----GGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccccceEEEEecC-----CCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 11467899986421 124789999999999999999998876
No 100
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.06 E-value=0.011 Score=63.68 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=65.0
Q ss_pred cccchhhcc-----cC-C-----CCCcccceeeeecCCcccccccchhh----------hhccceeecCccccccccccc
Q 004370 422 ITAGFLLKK-----SS-K-----TNGWSKRWFVLNEKTGKLGYTKKQEE----------RHFRGVVTLEECYIEEVVEDE 480 (758)
Q Consensus 422 i~~GwL~K~-----g~-~-----~~~WkkRWFVL~~~sg~L~YyK~~~e----------k~~kG~I~L~~~~v~~~~~~~ 480 (758)
++.|.|.+. |. + ...++.|+|.|=.+. |.|-|.... -.+++.|+|.++.|.+..++
T Consensus 211 l~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~--Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~- 287 (353)
T 1kz7_A 211 LMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKA--VLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKG- 287 (353)
T ss_dssp EEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSE--EEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTT-
T ss_pred heecceEEEecCccccchhhhhhccCcceeEEEEECCE--EEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCCC-
Confidence 777877643 21 0 124778888887663 777765431 13467889988887654322
Q ss_pred cccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 481 DAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 481 ~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
..+.|.|.... ..+.|.|.|.|.+++..|+.+|+.++..
T Consensus 288 ---------------~~~~F~i~~~~-------~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 326 (353)
T 1kz7_A 288 ---------------DTKKFEIWYNA-------REEVYIIQAPTPEIKAAWVNAIRKVLTS 326 (353)
T ss_dssp ---------------BTTEEEEEETT-------TTEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCceEEEEECC-------CCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 34678887643 1368999999999999999999887764
No 101
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=94.79 E-value=0.018 Score=60.76 Aligned_cols=98 Identities=20% Similarity=0.268 Sum_probs=65.0
Q ss_pred cccchhhcccC--CCCCcccceeeeecCCcccccccchhh------hhccceeecCccccccccccccccCchhhhhccc
Q 004370 422 ITAGFLLKKSS--KTNGWSKRWFVLNEKTGKLGYTKKQEE------RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAE 493 (758)
Q Consensus 422 i~~GwL~K~g~--~~~~WkkRWFVL~~~sg~L~YyK~~~e------k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~ 493 (758)
+..|.+....+ ..+..+.|+|.|=.+. |.|-|.... -..++.|+|.++.|.+..++
T Consensus 204 i~~~~~~~~~~~~~~~~~~~r~~fLF~d~--Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~-------------- 267 (311)
T 1nty_A 204 ILQESFQVWDPKTLIRKGRERHLFLFEMS--LVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG-------------- 267 (311)
T ss_dssp EEEEEEEEECSSSSSCCEEEEEEEEESSE--EEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTT--------------
T ss_pred eeeeeEEEEcCcccccccceeEEEeccCe--EEEEEeeccCCCCceeEEeeeeeccceeeEEccCC--------------
Confidence 45555544322 1345688998887663 777765432 13478899999988765432
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
..+.|.|..... ......|.|.|.|.+++..|+.+|+.++..
T Consensus 268 --~~~~F~i~~~~~----~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 268 --DPCKFALWVGRT----PTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp --CTTEEEEEESSS----CCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred --CCceEEEEeCCC----CCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 345788875210 012367999999999999999999888763
No 102
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=94.68 E-value=0.029 Score=53.23 Aligned_cols=84 Identities=20% Similarity=0.142 Sum_probs=57.5
Q ss_pred ccceeeeecCCcccccccchh------hhhccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhh
Q 004370 438 SKRWFVLNEKTGKLGYTKKQE------ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTV 511 (758)
Q Consensus 438 kkRWFVL~~~sg~L~YyK~~~------ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v 511 (758)
+.|.|-|=.+ .|.|.|--. .-.+++.++|.|..|...+.. ..++.|.|.+..+++
T Consensus 34 qqR~~FLFND--~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e---------------~~p~~~~l~s~~~G~-- 94 (140)
T 3qwm_A 34 HQREIFLFND--LLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ---------------YYPNGIRLTSSVPGA-- 94 (140)
T ss_dssp TEEEEEEESS--CEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS---------------SCTTEEEEEECCTTS--
T ss_pred cceEEEEecc--hhhheeecccCCCCCceEEEEEeeecceEEEcccCC---------------CCceEEEEEecCCCC--
Confidence 4555554433 388886211 124578899999888765432 268899999753110
Q ss_pred hhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 512 LKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 512 ~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
...+.+.|+|+|.+|+..|+.+|+.+|..
T Consensus 95 -~~k~~i~~~A~s~~ER~rwi~dL~esI~e 123 (140)
T 3qwm_A 95 -DIKVLINFNAPNPQDRKKFTDDLRESIAE 123 (140)
T ss_dssp -CCEEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred -cceEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 01267999999999999999999998864
No 103
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=94.00 E-value=0.039 Score=67.98 Aligned_cols=91 Identities=18% Similarity=0.252 Sum_probs=69.2
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchhh-----------hhccceeecCccccccccccccccCchhhhh
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEE-----------RHFRGVVTLEECYIEEVVEDEDAKSSKDKKK 490 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~e-----------k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~ 490 (758)
++.|.|.+.+.+ +.|||.|=.+- |.|-|.... -..++.|+|.++.|.+++++.
T Consensus 445 i~eG~l~~~~~k----~~r~~FLF~D~--Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~---------- 508 (1049)
T 3ksy_A 445 IMEGTLTRVGAK----HERHIFLFDGL--MICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTN---------- 508 (1049)
T ss_dssp CCEEEEEETTCS----SCEEEEEETTE--EEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSS----------
T ss_pred EEeceEEEEccC----ceEEEEeeCCe--EEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCc----------
Confidence 788888877633 78888887663 777775432 245789999999998776542
Q ss_pred cccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 491 QAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 491 np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
...+.|.|.+.. ...|.|.|.|.+++..|+.+|+....
T Consensus 509 ----~~~~~F~I~~~~--------~~~~~L~A~S~eeK~~Wi~~I~~~q~ 546 (1049)
T 3ksy_A 509 ----EYKHAFEIILKD--------ENSVIFSAKSAEEKNNWMAALISLQY 546 (1049)
T ss_dssp ----SCCSEEEECCTT--------SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ----cccceEEEEcCC--------CCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 257899998764 36899999999999999999966544
No 104
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=92.91 E-value=0.055 Score=58.28 Aligned_cols=85 Identities=14% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCcccceeeeecCCcccccccchhh---------hhccceeecCccccccccccccccCchhhhhcccCCCceEEEEecc
Q 004370 435 NGWSKRWFVLNEKTGKLGYTKKQEE---------RHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSK 505 (758)
Q Consensus 435 ~~WkkRWFVL~~~sg~L~YyK~~~e---------k~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~ 505 (758)
..++.|+|.|=.+. |.|-|.... -..++.|+|.++.|.+..++ ..+.|.|.+.
T Consensus 226 ~~~~~r~~fLF~d~--Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~----------------~~~~F~i~~~ 287 (354)
T 2rgn_B 226 SRGRERRVFLFEQI--IIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQG----------------DPCRFALTSR 287 (354)
T ss_dssp CCCCEEEEEEESSE--EEEEEECC--------CCEEEEEEEEGGGEEEEESGGG----------------CTTEEEEEEE
T ss_pred CCCceEEEEEeCCc--EEEEEeccCCCCCCCCCceEEcceeeccceeeeeccCC----------------CCceEEEEec
Confidence 45788888887663 777664321 23467889988887653322 3467888764
Q ss_pred CcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 506 VPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 506 ~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+. .....|.|.|.|.+++..|+.+|+.++..
T Consensus 288 ~~~----~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 288 GPE----GGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp CSS----SCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCC----CCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 210 01368999999999999999999888865
No 105
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=89.63 E-value=0.24 Score=53.49 Aligned_cols=67 Identities=9% Similarity=0.218 Sum_probs=44.3
Q ss_pred hccceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 461 HFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 461 ~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+++.|+|+++.|.++.++. ......|.|.+-.. ...-+..+.|+|.|.|.+++..|+.+|+.++.
T Consensus 301 ~~k~~i~l~~~~v~~~~~~~-------------~~~~~~f~i~~~~~-~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 301 RFRHMIPTEALQVRALPSAD-------------AEANAVCEIVHVKS-ESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CCEEEEEGGGEEEECCCCTT-------------TTSCCEEEEEECCB-TGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred eEeeeccccceEEEecCCCc-------------cchhhHHHHHhccc-cccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 35688999999988766432 11234566653210 00001147899999999999999999988876
Q ss_pred h
Q 004370 541 A 541 (758)
Q Consensus 541 ~ 541 (758)
.
T Consensus 367 ~ 367 (377)
T 1foe_A 367 D 367 (377)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=81.90 E-value=0.85 Score=53.70 Aligned_cols=92 Identities=20% Similarity=0.365 Sum_probs=56.7
Q ss_pred cccchhhcccCC-CCCcccceeeeecCCcccccccchhhhhccceeecCccccccccccccccCchhhhhcccCCCceEE
Q 004370 422 ITAGFLLKKSSK-TNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIF 500 (758)
Q Consensus 422 i~~GwL~K~g~~-~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F 500 (758)
++.||+.|.++. ...|++|.|-|.... |.++-.. ..+...+.++... .+..+. -.+...|
T Consensus 560 i~~G~~~k~~g~f~~~~~rR~~~l~p~r--~e~~~e~--~~~~~l~~~~~v~--~v~k~~-------------i~~~~~l 620 (689)
T 3v5w_A 560 IMHGYMSKMGNPFLTQWQRRYFYLFPNR--LEWRGEG--EAPQSLLTMEEIQ--SVEETQ-------------IKERKCL 620 (689)
T ss_dssp CEEEEEEEC-------CEEEEEEEETTE--EEEECTT--SCCCEEEEGGGEE--EEEEEE-------------SSSCEEE
T ss_pred eeecccccCCCcccchhhhhccccCCCc--ccccccC--CCCcceeeecccc--ccccCc-------------CCCCcce
Confidence 889999999654 568999999997553 5544322 1222334443321 122211 1256677
Q ss_pred EEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 501 KITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 501 ~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+..+. .++|++.+.|..+..+|..+|+.+..
T Consensus 621 ~~~~k~--------~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 621 LLKIRG--------GKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEEETT--------TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eeeecC--------CcEEEEECCChHHHHHHHHHHHHHHH
Confidence 777653 58899999999999999999976553
No 107
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=78.91 E-value=1.5 Score=45.74 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=43.2
Q ss_pred ceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 464 GVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 464 G~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
+.|+|.-|.+..-... +|. ..+.|.|..++ ...+++|.|.+.++...|+++|.+.|
T Consensus 206 ~~ipL~m~~~tR~~~~------------~d~-~~~~fev~s~d-------G~~t~~l~~~d~~~a~~W~~ai~~~i 261 (263)
T 1z87_A 206 KHVSLKMAYVSRRCTP------------TDP-EPRYLEICAAD-------GQDAVFLRAKDEASARSWAGAIQAQI 261 (263)
T ss_dssp EEEESSSEEEEEECCS------------SCS-SSCEEEEEETT-------TTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cccCcceeeeeeeccc------------cCC-CCceEEEECCC-------CCeeEEEEECCHHHHHHHHHHHHHHh
Confidence 5678877776533221 233 78899999986 35679999999999999999998776
No 108
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=72.24 E-value=2.3 Score=51.06 Aligned_cols=114 Identities=16% Similarity=0.078 Sum_probs=65.4
Q ss_pred cccc-hhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchhhh-h--cc--c-
Q 004370 422 ITAG-FLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKK-K--QA--E- 493 (758)
Q Consensus 422 i~~G-wL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~-~--np--~- 493 (758)
+++| +|.|.+......+.|-|.|+.+...|+|.....+. +..|.|+.++ |+.+......+..+... . .+ +
T Consensus 22 L~~G~~~~K~~~~s~~~~~~~f~lD~d~~~L~W~~~~k~~--~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~~ 99 (816)
T 3qr0_A 22 LIKGDKFLKWEEGSSGFIEILLRVDPKGYFLYWKIEGKED--TQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNI 99 (816)
T ss_dssp HHHCEEEEEECTTCCCCEEEEEEECTTSCEEEECCTTCSS--CEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTTS
T ss_pred HhCCCeEEEECCCCCcceeEEEEEcCCCCEEEEeCCCCCc--CcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCcc
Confidence 4555 55555544433467999999998888887532222 2466665432 33322211001100000 0 01 1
Q ss_pred CCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 494 KGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 494 ~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
......|+|..... +.+-+.+.|.|.+.++...|+..||+.+..
T Consensus 100 ~~e~r~fTIvyg~~----~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~ 143 (816)
T 3qr0_A 100 PLQDKCVTICHGYN----YIDLEWTHLVAENSSVAKKWSEEVFSYAYN 143 (816)
T ss_dssp CHHHHEEEEEECSS----SSSCEEEEEEESSHHHHHHHHHHHHHHHTC
T ss_pred cccccEEEEEECCC----cccceEEEEeeCCHHHHHHHHHHHHHHHHH
Confidence 11356899987642 122345589999999999999999998765
No 109
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=63.45 E-value=4.1 Score=39.35 Aligned_cols=56 Identities=11% Similarity=0.255 Sum_probs=35.2
Q ss_pred HHHHHHhcCCCCe--EEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 3 DAMISKYVERSDA--VLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 3 ~~mV~~YI~~~nt--IILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
..++..|+..-+. +||.|+.+.. .+ +..-..+.+.+...+...|-|+||+|+.+..
T Consensus 103 ~~~~~~~~~~~~~~d~vi~v~d~~~--~~-~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 103 EQLLSSYLQTRPQLCGMILMMDARR--PL-TELDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp HHHHHHHHHHCTTEEEEEEEEETTS--CC-CHHHHHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred HHHHHHHHhcCcCcCEEEEEEeCCC--CC-CHHHHHHHHHHHhcCCCEEEEEeccccCChh
Confidence 4577888877555 3555666663 22 2233333444433678899999999999743
No 110
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=63.11 E-value=7.2 Score=47.17 Aligned_cols=113 Identities=12% Similarity=0.011 Sum_probs=62.1
Q ss_pred cccc-hhhcccCCCCCcccceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchhhh-h---cc-cC
Q 004370 422 ITAG-FLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKDKK-K---QA-EK 494 (758)
Q Consensus 422 i~~G-wL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~~~-~---np-~~ 494 (758)
+++| +|.|.+.....-+.+.|.|+.+...|+|.....+ ...|.|+.++ |+.+......+..+... . .+ ..
T Consensus 21 L~~Gt~f~K~~~~~~~~k~~~frLD~d~~~L~W~~~~ke---~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~~~ 97 (885)
T 3ohm_B 21 LRRGSKFIKWDEETSSRNLVTLRVDPNGFFLYWTGPNME---VDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDAR 97 (885)
T ss_dssp HHHCEEEEEECTTCCSCCEEEEEECTTSCEEEEECGGGC---EEEEEGGGEEEEEETTTSCCCCSHHHHHCC--------
T ss_pred HhCCCeEEEECCCCCCcEEEEEEECCCCCEEEEeCCCCC---CceEeeehhhhhhcCcCCCCCccHHHHHHhccCcccCc
Confidence 5566 4455544433234556668888777777752211 2356665432 33222110111111100 0 01 11
Q ss_pred CCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 495 GPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 495 ~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.....|+|..... .++.+.+.|.|.+.++...|+.-|++.+..
T Consensus 98 ~e~r~fTIvyg~d----~~n~~~LdLVA~s~e~a~~W~~gL~~L~~~ 140 (885)
T 3ohm_B 98 LEEKLMTVVSGPD----PVNTVFLNFMAVQDDTAKVWSEELFKLAMN 140 (885)
T ss_dssp -CTTEEEEEECSS----GGGCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred ccccEEEEEECCC----CccceEEEEEeCChHHHHHHHHHHHHHHhh
Confidence 2356899987642 123467999999999999999999888775
No 111
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=61.74 E-value=5.1 Score=36.70 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=56.7
Q ss_pred cccchhhcccCCCCCcccceeeeecCCcccccccchh-----hhhccceeecCccccccccccccccCchhhhhcccCCC
Q 004370 422 ITAGFLLKKSSKTNGWSKRWFVLNEKTGKLGYTKKQE-----ERHFRGVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGP 496 (758)
Q Consensus 422 i~~GwL~K~g~~~~~WkkRWFVL~~~sg~L~YyK~~~-----ek~~kG~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~ 496 (758)
++.|++.-..+..+ -+.|..-|=+.. |.+-|... --.++..|.+.++.|++.... +.
T Consensus 11 l~q~~f~V~~~~~k-~~eR~vFLFe~~--ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~---------------~d 72 (119)
T 1fho_A 11 IRHDAFQVWEGDEP-PKLRYVFLFRNK--IMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD---------------ED 72 (119)
T ss_dssp SEEEEEEECSTTCS-CEEEEEEEETTE--EEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT---------------CC
T ss_pred cccCceEEEeCCCC-cceEEEEEecCc--EEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC---------------CC
Confidence 66777766643322 333444443331 44444331 113466788888887654331 13
Q ss_pred ceEEEEeccCcchhhhhhhhhhhh--hccChH-HHHHHHHhhHHHH
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLL--KAENMA-EKFEWLNKLRVVI 539 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L--~AeS~e-E~~~Wv~aiRa~i 539 (758)
++.|.|.++. ....|.+ .|.|.+ .++.|+..|+...
T Consensus 73 ~~kFeiw~~~-------~~~~~il~~qA~s~e~~K~~Wv~~I~~~~ 111 (119)
T 1fho_A 73 TIVLQPQEPG-------LPSFRIKPKDFETSEYVRKAWLRDIAEEQ 111 (119)
T ss_dssp EEEEECCSTT-------CCCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred CcEEEEccCC-------CCceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence 5679998764 1356778 999999 9999999997743
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=60.60 E-value=26 Score=36.38 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.++..|+...++||++|-+.+. ....+... ..+.+...+...|-|+||+|+.+
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~-~~~~~~~~--~~~~l~~~~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEG-WRPRDEEI--YQNFIKPLNKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB-SCHHHHHH--HHHHTGGGCCCEEEEEECGGGSS
T ss_pred HHHHHHhhcCCEEEEEEeCCCC-CCchhHHH--HHHHHHhcCCCEEEEEECccCCC
Confidence 4567888889987777655442 12333333 14444445678999999999993
No 113
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=60.37 E-value=6.2 Score=47.21 Aligned_cols=97 Identities=9% Similarity=-0.060 Sum_probs=56.9
Q ss_pred ccceeeeecCCcccccccchhhhhccceeecCccc-cccccccccccCchh-hhhc---cc-CCCceEEEEeccCcchhh
Q 004370 438 SKRWFVLNEKTGKLGYTKKQEERHFRGVVTLEECY-IEEVVEDEDAKSSKD-KKKQ---AE-KGPSLIFKITSKVPYKTV 511 (758)
Q Consensus 438 kkRWFVL~~~sg~L~YyK~~~ek~~kG~I~L~~~~-v~~~~~~~~~~s~k~-~~~n---p~-~~~~~~F~I~t~~~~k~v 511 (758)
++|.|.|+.+...|+|+.... ....|.|+.++ |+.+.....++..+. ..++ ++ .....+|+|......
T Consensus 34 k~~~frLd~d~~~l~W~~~~k---~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~~~e~~~fTIvyg~~~--- 107 (799)
T 2zkm_X 34 SPVILRVDPKGYYLYWTYQSK---EMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDM--- 107 (799)
T ss_dssp EEEEEEECTTSCEEEEEETTS---CEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTEEEEEECSSS---
T ss_pred eEEEEEEcCCCCEEEEccCCC---cCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCcccccccceEEEEECCCc---
Confidence 467789988877788875321 23577775542 333221110000000 0110 11 113568998876421
Q ss_pred hhhhhhhhhhccChHHHHHHHHhhHHHHhh
Q 004370 512 LKAHSALLLKAENMAEKFEWLNKLRVVIQA 541 (758)
Q Consensus 512 ~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~~ 541 (758)
.+.+++.|.|.+.++.+.|+..|++.+..
T Consensus 108 -~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~ 136 (799)
T 2zkm_X 108 -VDLTFHNFVSYKENVGKAWAEDVLALVKH 136 (799)
T ss_dssp -SSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred -cceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 22356899999999999999999998875
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=59.77 E-value=5.5 Score=37.36 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=32.4
Q ss_pred HHHHHhcCCC---CeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERS---DAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~---ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.++..|+... +++|+ |+.++. ..+...+.+.+.+...+...|-|+||.|+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~i~-v~d~~~---~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 94 RMIETYITTREELKAVVQ-IVDLRH---APSNDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp HHHHHHHHHCTTEEEEEE-EEETTS---CCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred HHHHHHHhhhhcCCEEEE-EEECCC---CCCHHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 4577787765 44554 455552 222222333333333567899999999999754
No 115
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=59.32 E-value=8.1 Score=37.95 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=42.7
Q ss_pred ceeecCccccccccccccccCchhhhhcccCCCceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHH
Q 004370 464 GVVTLEECYIEEVVEDEDAKSSKDKKKQAEKGPSLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVI 539 (758)
Q Consensus 464 G~I~L~~~~v~~~~~~~~~~s~k~~~~np~~~~~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i 539 (758)
..|||.=|.|..-... +|. ....|.|..++ ...+.+|.|.+..+...|.++|.+.|
T Consensus 121 ~~IPLkMayvtR~~~~------------tD~-e~r~fEv~s~D-------G~~t~iLrc~D~a~a~~Wf~aI~sni 176 (178)
T 2adz_A 121 KHVSLKMAYVSRRCTP------------TDP-EPRYLEICAAD-------GQDAVFLRAKDEASARSWAGAIQAQI 176 (178)
T ss_dssp EEEETTTCEEEEECCS------------SCC-SSCEEEEEETT-------TTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred eeecHHHHHHHHhccC------------CCC-CccEEEEEcCC-------CCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5688877766432211 233 56799999997 35789999999999999999998776
No 116
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=57.94 E-value=15 Score=32.92 Aligned_cols=53 Identities=11% Similarity=0.255 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+...+++|+++-..+. .........++.++ .+...|-|+||+|+.+.
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 71 EKVDRALEDAEVVLFAVDGRAE-LTQADYEVAEYLRR---KGKPVILVATKVDDPKH 123 (161)
T ss_dssp HHHHHHTTTCSEEEEEEESSSC-CCHHHHHHHHHHHH---HTCCEEEEEECCCSGGG
T ss_pred HHHHHHHHhCCEEEEEEECCCc-ccHhHHHHHHHHHh---cCCCEEEEEECcccccc
Confidence 4567789999988887766552 22333445555555 35679999999999875
No 117
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=54.77 E-value=33 Score=32.05 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hH---HHHHHHhcCC---CCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YR---ALRIAKEHDA---DSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~---aLklArevDP---~G~RTIGVlTK~Dlmd 59 (758)
.+...|+.+-+++|+++-..+ ..+ .. -+...++..+ .+...|-|+||.|+.+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 88 EQISQYWNGVYYAILVFDVSS----MESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHSTTCCCCCEEEEEEETTC----HHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHhhCcEEEEEEECCC----HHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 466778888887777765433 222 11 1233334333 5677888888888875
No 118
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=52.55 E-value=12 Score=35.23 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=41.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-hhc-hHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-VSS-YRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-lan-s~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
.+...|+..-+++|+++-..+. + +.+ ...+...++..+.+...|-|+||.|+.+......+.+.+++.
T Consensus 87 ~~~~~~~~~~d~iilV~d~~~~--~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~ 156 (192)
T 2fg5_A 87 SLAPMYYRGSAAAVIVYDITKQ--DSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156 (192)
T ss_dssp GGTHHHHTTCSEEEEEEETTCT--HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred hhhHHhhccCCEEEEEEeCCCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHH
Confidence 4667899999988887654432 1 111 122444556666778899999999998633222233444543
No 119
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=50.87 E-value=8.9 Score=35.64 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=32.4
Q ss_pred HHHHHhcCCCC--eEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSD--AVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~n--tIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.++..|+..-. .+|+.|+.+...........++..++. +...|-|+||.|+.++.
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~~p~i~v~nK~Dl~~~~ 149 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---NIPFTIVLTKMDKVKMS 149 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---TCCEEEEEECGGGSCGG
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---CCCEEEEEEChhcCChH
Confidence 46667776653 245555565531112222334444544 67899999999998643
No 120
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=49.40 E-value=13 Score=34.97 Aligned_cols=54 Identities=11% Similarity=0.267 Sum_probs=38.0
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHH----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRA----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~a----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-++||+++-..+ ..+-+. +...+...+.+...|-|+||.|+.+.
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~----~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITK----KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTC----HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHhcCCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 3567889988898888665433 222222 35666777778889999999999864
No 121
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=48.95 E-value=14 Score=33.59 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++-..+ ..+-+ -+...+.....+...|-|+||.|+.+.
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITR----RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTC----HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred hhHHHHhccCCEEEEEEeCcC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 567889999998888765443 22212 233355555557889999999999864
No 122
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=47.52 E-value=14 Score=37.45 Aligned_cols=44 Identities=16% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 13 SDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 13 ~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+++|+.|.++.. .+... -..+.+.+.. +.-.|-|+||.|++..
T Consensus 116 ~~~~l~~i~~~~~--~~~~~-d~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 116 VQCCLYFIAPSGH--GLKPL-DIEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp CCEEEEEECSCCS--SCCHH-HHHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred eeEEEEEecCCCC--CCCHH-HHHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 4578888888874 33333 3556666666 7889999999999864
No 123
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=47.49 E-value=34 Score=32.54 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCC----CCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDA----DSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP----~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-++||+++-..+ ...-..+.....++-. .+...|-|+||.|+.+.
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~---~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTS---QQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTC---HHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred HhHHHHHhcCCCEEEEEEECcC---HHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 3567889999998887764433 1122223334444532 56788999999999863
No 124
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=47.29 E-value=15 Score=33.49 Aligned_cols=51 Identities=24% Similarity=0.289 Sum_probs=35.9
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
...|+...+++|+++- ++ |......+...+.+...+...|-|+||.|+.+.
T Consensus 72 ~~~~~~~~d~~i~v~d-~~---~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~ 122 (178)
T 2lkc_A 72 RARGAQVTDIVILVVA-AD---DGVMPQTVEAINHAKAANVPIIVAINKMDKPEA 122 (178)
T ss_dssp CCSSCCCCCEEEEEEE-TT---CCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCS
T ss_pred HHHHHhhCCEEEEEEE-CC---CCCcHHHHHHHHHHHhCCCCEEEEEECccCCcC
Confidence 3456777787777764 44 333455666666666667889999999999875
No 125
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=44.55 E-value=21 Score=32.86 Aligned_cols=54 Identities=11% Similarity=0.120 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH----HHH-HHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR----ALR-IAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLk-lArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-+++|+++-..+ ..+-+ -+. +.......+...|-|+||.|+.+.
T Consensus 84 ~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 84 RSLTTAFFRDAMGFLLLFDLTN----EQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp HHHHHHTTTTCSEEEEEEETTC----HHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred HHHHHHHHcCCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3577889999998888765433 22211 122 222233256789999999999863
No 126
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=44.37 E-value=11 Score=38.22 Aligned_cols=53 Identities=23% Similarity=0.214 Sum_probs=39.1
Q ss_pred cHHHHHHhc--CCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 2 DDAMISKYV--ERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 2 ~~~mV~~YI--~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
++.+...|+ .+.++||++|-+.+ + ..-+.+..++-..|...|-|+||+|+.+.
T Consensus 71 ~e~i~~~~~~~~~~d~vi~VvDas~----~--~~~~~l~~~l~~~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 71 DEQIAAQSVIDLEYDCIINVIDACH----L--ERHLYLTSQLFELGKPVVVALNMMDIAEH 125 (256)
T ss_dssp HHHHHHHHHHHSCCSEEEEEEEGGG----H--HHHHHHHHHHTTSCSCEEEEEECHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEEeeCCC----c--hhHHHHHHHHHHcCCCEEEEEEChhcCCc
Confidence 356888999 88998777764433 3 23456666777778999999999999863
No 127
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=43.73 E-value=24 Score=32.26 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-+++|+++...+ ...-+. ..+.+.....+...|-|+||.|+.+.
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITE----MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHhccCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3577889999998888775543 222111 23444455567889999999999864
No 128
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=43.69 E-value=30 Score=32.41 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+...+++|+++...+ ...-+. ..+.+..+..+...|-|+||.|+.+.
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 76 AAIRDNYFRSGEGFLCVFSITE----MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhhCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 3577889998898888765433 222111 13444455567889999999999864
No 129
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=43.45 E-value=6.6 Score=41.78 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhhcCHHHHHHHHHHHHHHHHHHHHH
Q 004370 580 MAQEVRGYVEAVLNSLNANVPKAVVLCQVEKAKEDMLNQLYSSISAQSTERIGELLQEDKNAKSRRELCQKQSTLLSKLI 659 (758)
Q Consensus 580 i~~~V~sY~~iV~k~i~d~VPKai~h~~V~~~k~~Ll~~LY~~~~~~~~~~~~~Ll~E~~~~~~rR~~~~~~~~~l~~~~ 659 (758)
+..+...+..+....|+..+|...-.. +..-.+.-.+|-.-+...+. +-.+.| +|++|+||+.|.+++++|++|.
T Consensus 280 ~~~L~~~l~~~l~~~i~~~lp~l~~~i--~~~l~~~~~~l~~lg~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 354 (360)
T 3t34_A 280 SEHLAKMLSKHLERVIKSRIPGIQSLI--NKTVLELETELSRLGKPIAH-GTDSRV--DPAIMERRSAISKRLELYRAAQ 354 (360)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTHHHHH--HHHHTTTTCC-----------------------CCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHcCCCCCC-CHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888899999999765432 22111111111112211111 233445 8899999999999999999875
Q ss_pred H
Q 004370 660 R 660 (758)
Q Consensus 660 ~ 660 (758)
.
T Consensus 355 ~ 355 (360)
T 3t34_A 355 S 355 (360)
T ss_dssp S
T ss_pred H
Confidence 3
No 130
>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Probab=42.18 E-value=25 Score=35.03 Aligned_cols=36 Identities=22% Similarity=0.323 Sum_probs=30.1
Q ss_pred ceEEEEeccCcchhhhhhhhhhhhhccChHHHHHHHHhhHHHHh
Q 004370 497 SLIFKITSKVPYKTVLKAHSALLLKAENMAEKFEWLNKLRVVIQ 540 (758)
Q Consensus 497 ~~~F~I~t~~~~k~v~k~~r~~~L~AeS~eE~~~Wv~aiRa~i~ 540 (758)
.+.|.|.... ...+.|.|.|.++...|+.-|+..+.
T Consensus 115 ~laFSii~~~--------~~~L~fvA~s~~~~~~W~DGL~~Llg 150 (203)
T 3a98_B 115 ELAFSILYDS--------NCQLNFIAPDKHEYCIWTDGLNALLG 150 (203)
T ss_dssp GGEEEEEETT--------TEEEEEECSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEecCC--------CceEEEecCCHHHHHHHHHHHHHHhc
Confidence 4789887542 37899999999999999999988774
No 131
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=42.00 E-value=19 Score=32.16 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-+++|+++...+ ..+-+. ..+.+.....+...|-|+||.|+.+.
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 66 AAIRDNYFRSGEGFLCVFSITE----MESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHhhcCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 3577889999998888775543 222221 23344445567889999999999864
No 132
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=41.45 E-value=21 Score=32.59 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-++||+++-..+. ..+.+ ..-+...++..+.+...|=|+||.|+.++
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNK-ASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 131 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred HHHHHHccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence 4667888888888887654431 00111 12245556666677889999999999864
No 133
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=40.95 E-value=32 Score=31.67 Aligned_cols=67 Identities=19% Similarity=0.128 Sum_probs=40.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHH----HHHhc--CCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALR----IAKEH--DADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLk----lArev--DP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
.+...|+.+-+++|+++-.... .-..+.+.+. ..+++ ...+...|-|+||.|+.+.-+. +.+.+++.
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~-~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~ 161 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPN-RLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPV--EMVRAVVD 161 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGG-GHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCH--HHHHHHHC
T ss_pred HHHHHHHhcCCEEEEEEECCcc-hhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCH--HHHHHHHH
Confidence 5678899999988887655421 0011223332 33333 4467789999999999875332 23444553
No 134
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=40.91 E-value=27 Score=32.47 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH----H-HHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA----L-RIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a----L-klArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++-..+ ..+-+. + .+.+.....+...|-|+||.|+.+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTN----MASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTC----HHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred hhhHHHhcCCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 578889999998888765433 221111 2 2334455667889999999999764
No 135
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=40.61 E-value=24 Score=32.80 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCc-hhchH-HHHHHHhc--------CCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPD-VSSYR-ALRIAKEH--------DADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vD-lans~-aLklArev--------DP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-++||+++-..+. + +.+.. -+....+. +..+...|-|+||.|+.+.
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDH--LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCG--GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcH--HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 35677899999988887755442 2 22211 11111111 1136789999999999875
No 136
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=40.48 E-value=25 Score=37.12 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=36.6
Q ss_pred hcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch--hHHHHHHHHHc
Q 004370 9 YVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS--KALAAVRALLL 73 (758)
Q Consensus 9 YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt--~~~~~~~~iL~ 73 (758)
-+.+=+.||+ |++|+. .++.....-++...+-..|...|=||||.||.++.. +..+.|.+...
T Consensus 83 ~~anvD~v~~-V~~~~~-p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~ 147 (307)
T 1t9h_A 83 PICNVDQAVL-VFSAVQ-PSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR 147 (307)
T ss_dssp TEECCCEEEE-EEESTT-TTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHhCCEEEE-EEeCCC-CCCCHHHHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHH
Confidence 3455555554 455552 355554433333333345889999999999998643 22345666653
No 137
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=40.34 E-value=24 Score=32.81 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=37.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+...+.+|+++-..+. .-+.+ ..-+....+.-+.+...|-|+||.|+.+..
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQ-ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 137 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred hhHHHHHhhCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence 4678899999988887654431 00011 123444555556678899999999998643
No 138
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=39.81 E-value=16 Score=34.15 Aligned_cols=56 Identities=16% Similarity=0.122 Sum_probs=35.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+..-+++|+++-..+. ..+.+ ..-+...++..+.+...|-|+||.|+.+.
T Consensus 86 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 86 TITTAYYRGAMGFLLMYDIANQ-ESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp CSGGGGGTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred hhHHHhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 3556788888888877654331 01111 11234455555667889999999999864
No 139
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=39.74 E-value=47 Score=31.49 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhch-HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSY-RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans-~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-+++|+++-..+. ..+.+- .-+...++..+.+.-.|-|+||.|+.+.
T Consensus 92 ~~~~~~~~~~~d~iilv~D~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 92 RTITQSYYRSANGAILAYDITKR-SSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHHHHTTCSEEEEEEETTBH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHhhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 35778899999988887654331 011111 1233344444556788999999999863
No 140
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=39.68 E-value=29 Score=30.89 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-+.+|+++...+ ..+-+. ..+.+.....+...|-|+||.|+.+.
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 65 ASMRDLYIKNGQGFILVYSLVN----QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHhccCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 3577888888888887775544 222111 23445556678889999999999753
No 141
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=38.77 E-value=21 Score=40.68 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=39.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++..|+..-++||++|-+.+. ++. .....+.+.+...+...|-|+||+|++++
T Consensus 180 ~~~~~~l~~aD~il~VvDa~~~--~~~-~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 180 AVLRWFAERVDLIILLFDAHKL--EIS-DEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHHHHHHHHCSEEEEEEETTSC--CCC-HHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred HHHHHHHHhCCEEEEEEeCCcC--CCC-HHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 5678889888887777655442 332 23455667777778889999999999974
No 142
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=38.67 E-value=33 Score=32.00 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-+++||++-..+. ..+.+ ..-+...+...+.+...|-|+||.|+.+.
T Consensus 86 ~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 86 RTITTAYYRGAMGFILMYDITNE-ESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 35778899999988887654331 01111 12344556666677889999999999754
No 143
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=37.49 E-value=26 Score=32.23 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhch----HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSY----RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans----~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-+++|+++-..+ ..+- .-+...+.....+...|-|+||.|+.+.
T Consensus 73 ~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 73 RSVTRSYYRGAAGALLVYDITS----RETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHTTSTTCSEEEEEEETTC----HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 3567889999998888775543 2221 1233345555567889999999999753
No 144
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=37.34 E-value=30 Score=32.52 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhch----HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSY----RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans----~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-++||+++-..+ ...- .-+...+...+.+...|-|+||.|+.+.
T Consensus 71 ~~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 71 RTITTAYYRGAMGFILMYDITN----EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HHHHHTTGGGCSEEEEEEETTC----HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred cchHHHhhcCCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence 3577889999988887765433 2221 1233444555567889999999999864
No 145
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=37.16 E-value=15 Score=33.35 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch-HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY-RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans-~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+.+++|+++-..+. ..+.+. .-+...+...+.+...|-|+||.|+.+.
T Consensus 78 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 78 SLIPSYIRDSTVAVVVYDITNT-NSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp GGSHHHHHTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 4667889888888877654331 011111 1233333334456778999999999864
No 146
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=36.86 E-value=27 Score=32.50 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch--HHHHHHHhcCC--CCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY--RALRIAKEHDA--DSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans--~aLklArevDP--~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+.+-++||+++-..+. ..+... ....+.+.... .+...|-|+||.|+.+.-
T Consensus 82 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 142 (190)
T 2h57_A 82 NLWEHYYKEGQAIIFVIDSSDR-LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV 142 (190)
T ss_dssp GGGGGGGGGCSEEEEEEETTCH-HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC
Confidence 4667889999888876654331 002221 11223333333 578899999999998743
No 147
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=36.57 E-value=43 Score=30.04 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=35.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch--HHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY--RALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans--~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+.+-+++|+++-..+. -.+... ....+.+.....+...|-|+||.|+.+..
T Consensus 66 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 66 PYWRCYYSNTDAVIYVVDSCDR-DRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp GGGGGGCTTCSEEEEEEETTCC-TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 4667899988988887655442 112222 12233333334678899999999998753
No 148
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=36.12 E-value=41 Score=34.96 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=36.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.++..|+..-++||++|-+.+. ........++..++.. .+.-.|-|+||+|+.+.
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~-~~~~~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHP-PTPEDELVARALKPLV-GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSC-CCHHHHHHHHHHGGGT-TTSCEEEEEECGGGCSS
T ss_pred HHHHHHHhcCCEEEEEEECCCC-CChHHHHHHHHHHhhc-CCCCEEEEEECcccCCc
Confidence 3567889888877776655442 2333344455555553 25779999999999864
No 149
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=35.94 E-value=49 Score=30.75 Aligned_cols=56 Identities=13% Similarity=0.186 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch--HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY--RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans--~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-++||+++-..+. -.+.+. ....+.+.....+...|-|+||.|+.+.
T Consensus 82 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 82 SMWERYCRGVSAIVYMVDAADQ-EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp TTHHHHHTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHccCCEEEEEEECCCH-HHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 4678899999988877654331 012111 1122333333456789999999999874
No 150
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=35.71 E-value=33 Score=31.25 Aligned_cols=54 Identities=17% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc-hHH---HHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS-YRA---LRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan-s~a---LklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+..-+++|+++-. + |..+ ..+ +...++....+...|-|+||.|+.+..
T Consensus 76 ~~~~~~~~~~d~~i~v~d~-~---~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 133 (181)
T 2efe_B 76 SLAPMYYRGAAAAIIVFDV-T---NQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133 (181)
T ss_dssp GGTHHHHTTCSEEEEEEET-T---CHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred hhhHHHhccCCEEEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccc
Confidence 4667889988988876654 3 2222 122 333444434467789999999998643
No 151
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=35.15 E-value=61 Score=35.53 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=33.2
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK 63 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~ 63 (758)
.|+...+.+||++- +.. .+..+ -.+++..+...|.-.|-|+||.|+.+....
T Consensus 273 ~~~~~ad~~llviD-~~~--~~~~~-~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~ 324 (456)
T 4dcu_A 273 KAIDRSEVVAVVLD-GEE--GIIEQ-DKRIAGYAHEAGKAVVIVVNKWDAVDKDES 324 (456)
T ss_dssp HHHHHCSEEEEEEE-TTT--CCCHH-HHHHHHHHHHTTCEEEEEEECGGGSCCCSS
T ss_pred HHHhhCCEEEEEEe-CCC--CcCHH-HHHHHHHHHHcCCCEEEEEEChhcCCCchH
Confidence 57888887777654 443 33333 234444444467889999999999975443
No 152
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=35.02 E-value=34 Score=30.67 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-hhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-VSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-lan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++-..+. + +.+ ..-+...++....+...|-|+||.|+.+.
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 70 ALAPMYYRGSAAAIIVYDITKE--ETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp GGTHHHHTTCSEEEEEEETTCH--HHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred cccHhhCcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 4677899999988887654431 1 111 12234455555555667777899999864
No 153
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.67 E-value=33 Score=30.61 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhch-HH---HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSY-RA---LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans-~a---LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+.+-+++|+++-..+ ..+- .+ +...++.-+.+...|-|+||.|+.+.
T Consensus 66 ~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 66 ASLAPXYYRNAQAALVVYDVTK----PQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp GGGHHHHHTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hhhhhhhhccCcEEEEEEecCC----hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 3577889999998877765433 2222 12 22233333456778899999999864
No 154
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=34.67 E-value=60 Score=28.90 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+.+...|+.+-+++|+++-..+. -.+.+.. ...+.+.....+...|-|+||.|+.+.
T Consensus 58 ~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 58 RPLWRHYFQNTQGLIFVVDSNDR-ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHHHTTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 35778899999988887654331 0122211 111222223446789999999999764
No 155
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=34.32 E-value=19 Score=32.05 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=35.1
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHH-hcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAK-EHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklAr-evDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+...+++|+++...+ ..+-+ -+...+ ..+..+...|-|+||.|+.+.
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~----~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 65 SAMRDQYMRTGEGFLCVFAINN----TKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp CHHHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred hHHHHHhhccCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence 3567789998898888776543 22211 122223 334457889999999999873
No 156
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=33.81 E-value=50 Score=34.04 Aligned_cols=62 Identities=15% Similarity=0.115 Sum_probs=39.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
..+.+++++-+.||.+ +.|. |...+.-..+.+-+ .+...|-|++|.||++.. ..++|.+.+.
T Consensus 15 ~~~~~~l~~aDvVl~V-vDAr---~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~~--~~~~~~~~~~ 76 (282)
T 1puj_A 15 REVTEKLKLIDIVYEL-VDAR---IPMSSRNPMIEDIL--KNKPRIMLLNKADKADAA--VTQQWKEHFE 76 (282)
T ss_dssp HHHHHHGGGCSEEEEE-EETT---STTTTSCHHHHHHC--SSSCEEEEEECGGGSCHH--HHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEE-EeCC---CCCccCCHHHHHHH--CCCCEEEEEECcccCCHH--HHHHHHHHHH
Confidence 4567888888865554 5555 33333222344444 467889999999999842 2345777764
No 157
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=33.61 E-value=31 Score=32.17 Aligned_cols=53 Identities=21% Similarity=0.182 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc----hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS----YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan----s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+.+|+++-..+ ..+ ..-+...+.....+...|-|+||.|+.+.
T Consensus 89 ~~~~~~~~~~d~vi~v~D~~~----~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 89 AITSAYYRGAVGALLVFDLTK----HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp TTHHHHHTTCCEEEEEEETTC----HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred hhhHHHhccCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 467789999998888765433 222 12234445555567789999999999864
No 158
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=33.34 E-value=28 Score=32.16 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch--HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY--RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans--~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+.++||+++-..+. ..+.+. ....+.+.....+...|-|+||.|+.+.
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 77 SYWRNYFESTDGLIWVVDSADR-QRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcCCCEEEEEEECcCH-HHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 3567788888888877654332 012221 1122333333456889999999999875
No 159
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=31.76 E-value=28 Score=31.56 Aligned_cols=53 Identities=25% Similarity=0.304 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHH-----HHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRAL-----RIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aL-----klArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++...+ ...-+.+ .+.+.....+...|-|+||.|+.+.
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 72 AMREQYMRAGHGFLLVFAIND----RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp CCHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHhhCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 356788888888887764433 2221111 3345556777889999999999863
No 160
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=31.56 E-value=37 Score=32.94 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=29.7
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCC--CCceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDAD--STRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~--G~RTIGVlTK~Dlmd~ 60 (758)
+..|....+++|+++-..+. ..+.....+.+.+++... +...|-|+||+|+.+.
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQ-CGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCT-TSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHhhccccEEEEEEecccc-cCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 34566666666665543331 112222333444444332 6779999999999864
No 161
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=31.25 E-value=28 Score=32.88 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
..+...|+..-+++||++-..+. .-+.+ ..-+...++....+...|-|+||.|+.+
T Consensus 91 ~~~~~~~~~~~d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 91 RSIAKSYFRKADGVLLLYDVTCE-KSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred hhhHHHHHhhCCEEEEEEECCCh-HHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 35778899999988887754331 01111 1123445555556778999999999974
No 162
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=31.22 E-value=27 Score=32.58 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=35.0
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+.+-+++|+++-..+. ..+.+ ..-+...++..+.+.-.|-|+||.|+.+.
T Consensus 86 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 86 ITRSYYRGAAGALLVYDITRR-ETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp CCHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred hHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 467889998988887655442 01111 12233445555567788999999999763
No 163
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=31.14 E-value=61 Score=36.09 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=37.4
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+..-+.+||+|-+.+. +...+-+.+.+++.. |...|-|+||+|+.++
T Consensus 89 ~~~~~~~~aD~~ilVvda~~g-~~~qt~e~l~~~~~~---~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 89 AVVSAADIIDLALIVVDAKEG-PKTQTGEHMLILDHF---NIPIIVVITKSDNAGT 140 (482)
T ss_dssp HHHHHTTSCCEEEEEEETTTC-SCHHHHHHHHHHHHT---TCCBCEEEECTTSSCH
T ss_pred HHHHHHhhCCEEEEEEecCCC-ccHHHHHHHHHHHHc---CCCEEEEEECCCcccc
Confidence 455678888888877754432 235566677788775 6778999999999973
No 164
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=30.99 E-value=30 Score=35.01 Aligned_cols=52 Identities=19% Similarity=0.332 Sum_probs=35.1
Q ss_pred cHHHHHHhc--CCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 2 DDAMISKYV--ERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 2 ~~~mV~~YI--~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
++.|...|+ .+.++||+++ .++ ++. ..+.+..++-..|...|-|+||+|+.+
T Consensus 71 ~e~v~~~~~~~~~~d~ii~V~-D~t---~~~--~~~~~~~~l~~~~~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 71 DEKIARDYLLKGDADLVILVA-DSV---NPE--QSLYLLLEILEMEKKVILAMTAIDEAK 124 (258)
T ss_dssp HHHHHHHHHHHSCCSEEEEEE-ETT---SCH--HHHHHHHHHHTTTCCEEEEEECHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEe-CCC---chh--hHHHHHHHHHhcCCCEEEEEECcCCCC
Confidence 356778888 4677666655 444 333 234455555556889999999999975
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=30.63 E-value=1e+02 Score=33.50 Aligned_cols=52 Identities=17% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCC-ceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADST-RTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~-RTIGVlTK~Dlmd~ 60 (758)
++..|+..-+.+||+|-..+. .-..+.+.+.+++.. |. ..|-|+||+|+.+.
T Consensus 120 ~~~~~~~~aD~~ilVvDa~~g-~~~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~ 172 (434)
T 1zun_B 120 NMATGASTCDLAIILVDARYG-VQTQTRRHSYIASLL---GIKHIVVAINKMDLNGF 172 (434)
T ss_dssp HHHHHHTTCSEEEEEEETTTC-SCHHHHHHHHHHHHT---TCCEEEEEEECTTTTTS
T ss_pred HHHHHHhhCCEEEEEEECCCC-CcHHHHHHHHHHHHc---CCCeEEEEEEcCcCCcc
Confidence 445678888988887665442 223445567777776 44 47899999999873
No 166
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=30.06 E-value=38 Score=33.62 Aligned_cols=53 Identities=19% Similarity=0.109 Sum_probs=34.0
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCC--CCceeeecC-CCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDAD--STRTVGIIS-KMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~--G~RTIGVlT-K~Dlmd~ 60 (758)
+..|+...++||+++-+.. +.-....+++..+++-+. +..+|-|+| |+|+.+.
T Consensus 99 ~~~~~~~~d~il~V~d~~~--~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR--YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC--CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHhcCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 3457888888777765543 233344456666665222 357899999 9999853
No 167
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=29.52 E-value=43 Score=30.36 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-H-------HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-A-------LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-a-------LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+..-+++|+++-..+ ...-+ + +..+...++.+...|-|+||.|+.+.
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 133 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTN----ASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES 133 (182)
T ss_dssp ----CCSTTCCEEEEEEETTC----HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred hhhHHHhhcCCEEEEEEECCC----hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence 456778888888888765433 22211 1 11111123467789999999999753
No 168
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=29.42 E-value=41 Score=31.89 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=34.5
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhc--hHHHHHHH------hcCCCCCceeeecCCCCCCCcc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSS--YRALRIAK------EHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlan--s~aLklAr------evDP~G~RTIGVlTK~Dlmd~g 61 (758)
|...|+...+++||++-. . ++.. ..++..-. .....+...|-|+||+|+.+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDS-A---AFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHGGGEEEEEEEEET-T---THHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred HHHHHHhhCCEEEEEEEC-C---CcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 788899999888887644 3 3322 22222211 1345567899999999998653
No 169
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=29.36 E-value=51 Score=29.32 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch-HHH-HHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY-RAL-RIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans-~aL-klArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++...+. ..+.+. ..+ .+.+.....+...|-|+||.|+.+.
T Consensus 66 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 66 AMRDLYMKNGQGFALVYSITAQ-STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp THHHHHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 5677888888988887755441 011111 112 2334345667889999999999864
No 170
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=29.36 E-value=1e+02 Score=34.79 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=42.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL~ 73 (758)
..+..|+..-+++|++|-+.+. +...+...++.+++ .|.-.|-|+||+|+...... ..+.+.+.+.
T Consensus 97 ~~~~~~l~~aD~allVvDa~~g-~~~~t~~~~~~~~~---~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 97 EDTYRTLTAVDSALMVIDAAKG-VEPRTIKLMEVCRL---RHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp HHHHHGGGGCSEEEEEEETTTC-SCHHHHHHHHHHHT---TTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEEEEeCCCC-CCHHHHHHHHHHHH---cCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 3567889999988887766553 34444444555554 46789999999999754332 2233444443
No 171
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=29.30 E-value=65 Score=29.73 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH--HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA--LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a--LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-++||+++-..+. -.+.+... ..+.+.....+...|-|+||.|+.+.
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 75 SSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp GGGHHHHTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhcCCCEEEEEEeCCCH-HHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 4667899999988887655442 01222211 22333333467889999999999864
No 172
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=29.28 E-value=22 Score=37.04 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=33.4
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhch---HHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSY---RALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans---~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
|++.|+.+-+.+|+++...+- +.... .-|..++. .+...|=|+||+||.++.
T Consensus 72 l~r~~~~naD~vliV~d~~~p--~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~ 126 (302)
T 2yv5_A 72 LIRPKVANVDRVIIVETLKMP--EFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEE 126 (302)
T ss_dssp EETTEEESCCEEEEEECSTTT--TCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHH
T ss_pred HhHHHHHhcCEEEEEEECCCC--CCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCcc
Confidence 445678888877776554432 33322 22444444 578899999999999753
No 173
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=29.20 E-value=50 Score=35.97 Aligned_cols=51 Identities=24% Similarity=0.313 Sum_probs=33.8
Q ss_pred HhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcch
Q 004370 8 KYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS 62 (758)
Q Consensus 8 ~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt 62 (758)
.|+...+++||++-..+ .... .-++++..+...|.-.|-|+||.|+.+...
T Consensus 253 ~~~~~ad~~llv~D~~~---~~s~-~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~ 303 (436)
T 2hjg_A 253 KAIDRSEVVAVVLDGEE---GIIE-QDKRIAGYAHEAGKAVVIVVNKWDAVDKDE 303 (436)
T ss_dssp HHHHHCSEEEEEEETTT---CCCH-HHHHHHHHHHHTTCEEEEEEECGGGSCCCT
T ss_pred HHHHhCCEEEEEEcCCc---CCcH-HHHHHHHHHHHcCCcEEEEEECccCCCcch
Confidence 57888887776655433 2222 224555555556888999999999997544
No 174
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=29.18 E-value=39 Score=30.99 Aligned_cols=55 Identities=20% Similarity=0.242 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhc--hHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSS--YRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlan--s~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+.+-+++|+++-..+. .-+.+ .-...+.+.....+...|-|+||.|+.+
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 81 AMREQYMRTGDGFLIVYSVTDK-ASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp SSHHHHHHHCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHhcCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 4567888888988887654331 00111 1112233445667788999999999986
No 175
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=28.72 E-value=20 Score=32.34 Aligned_cols=53 Identities=15% Similarity=0.131 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++-..+ ..+-+ -+...++..+.+...|-|+||.|+.+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 70 ALGPIYYRDSNGAILVYDITD----EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred hhHHHHhccCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 355667888888887765433 22211 123344444456778999999999864
No 176
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=28.57 E-value=50 Score=29.86 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhchH-HHH----HHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSSYR-ALR----IAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlans~-aLk----lArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+...+++|+++...+. ..+.+-. -+. .+......+...|-|+||.|+.+.
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 131 (177)
T 1wms_A 70 RSLRTPFYRGSDCCLLTFSVDDS-QSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISER 131 (177)
T ss_dssp HHHHGGGGTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSC
T ss_pred hhhHHHHHhcCCEEEEEEECcCH-HHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccc
Confidence 35677899999988877655442 0011111 112 222223366789999999999853
No 177
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=28.33 E-value=54 Score=30.22 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-++||+++-..+. -.+.+.. ...+.+.....+...|-|+||.|+.+.
T Consensus 80 ~~~~~~~~~~d~ii~v~D~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 80 SSWNTYYTNTEFVIVVVDSTDR-ERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp CGGGGGGTTCCEEEEEEETTCT-TTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence 4567889999988877655442 0122211 122222222467889999999999874
No 178
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=28.29 E-value=32 Score=32.76 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=34.2
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+...+++|+++-..+ ..+-+ -+...+..-+.+...|-|+||+|+.+.
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 77 LKDVYYIGASGAILFFDVTS----RITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp CCHHHHTTCSEEEEEEETTC----HHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred HHHHHhhcCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45678888888877765543 22212 235555555667889999999999864
No 179
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=28.13 E-value=43 Score=32.07 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCchhc----hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPDVSS----YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vDlan----s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-+++|+++-..+ ..+ ..-+...++..+.+.-.|-|+||+|+.+.
T Consensus 89 ~~~~~~~~~~~d~~i~v~D~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 89 RSITQSYYRSANALILTYDITC----EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHGGGSTTCSEEEEEEETTC----HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHhcCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 3567789999998888765433 222 12344555555667778999999999853
No 180
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=28.05 E-value=22 Score=38.25 Aligned_cols=52 Identities=12% Similarity=0.092 Sum_probs=34.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
+++..|....+ +||-|+.+. |...+-.-.+.+.+. +...|-|+||.||.++.
T Consensus 63 ~~L~~~~~~~~-lil~VvD~~---d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~ 114 (369)
T 3ec1_A 63 SMLHRIGESKA-LVVNIVDIF---DFNGSFIPGLPRFAA--DNPILLVGNKADLLPRS 114 (369)
T ss_dssp HHHHHHHHHCC-EEEEEEETT---CSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTT
T ss_pred HHHHHhhccCc-EEEEEEECC---CCCCchhhHHHHHhC--CCCEEEEEEChhcCCCc
Confidence 45566655544 677777777 555444334445443 57789999999999864
No 181
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.85 E-value=31 Score=32.56 Aligned_cols=54 Identities=15% Similarity=0.226 Sum_probs=34.8
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+...|+..-++||+++-..+. ..+.+ ..-+...++.-+.+...|-|+||+|+.+
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDE-RTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred HHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 457788888888887654431 01111 1234455555566788999999999954
No 182
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=27.76 E-value=54 Score=29.91 Aligned_cols=54 Identities=20% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH-----HHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA-----LRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a-----LklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+...+++|+++...+ ...-+. ..+.+.....+...|-|+||.|+.+..
T Consensus 67 ~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 125 (189)
T 4dsu_A 67 AMRDQYMRTGEGFLCVFAINN----TKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRT 125 (189)
T ss_dssp TTHHHHHHHCSEEEEEEETTC----HHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCS
T ss_pred HHHHHHHhcCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccc
Confidence 467788888888887765543 211111 223344566678899999999998643
No 183
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=27.57 E-value=52 Score=30.27 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch-HHH---HHHHhc-CCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY-RAL---RIAKEH-DADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans-~aL---klArev-DP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-++||+++-..+ ..+- .+. ....+. ...+...|-|+||.|+.+.
T Consensus 79 ~~~~~~~~~~d~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 79 TLTPSYYRGAQGVILVYDVTR----RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp CSHHHHHTTCCEEEEEEETTC----HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSC
T ss_pred hhhHHHhccCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCccc
Confidence 467789999888877765433 2221 121 222222 2345677899999999653
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=27.09 E-value=1e+02 Score=34.76 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL~ 73 (758)
..+..|+..-+++||+|-+.+. +...+ ..+.+.+...|...|-|+||+|+.+.... ..+.+.+.|.
T Consensus 97 ~~~~~~l~~aD~~IlVvDa~~g-~~~~t---~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 97 EDTYRTLTAVDCCLMVIDAAKG-VEDRT---RKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp HHHHHGGGGCSEEEEEEETTTC-SCHHH---HHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEEEEeCCcc-chHHH---HHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 3567789999988888776663 33333 34444444557889999999999875432 2333444443
No 185
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=27.06 E-value=86 Score=33.76 Aligned_cols=66 Identities=9% Similarity=0.095 Sum_probs=39.7
Q ss_pred HHHhcCCCCeEEEEEecCCCCC-chhchHHHHHHHhcCCCCCceeeecCCCCCCCcch--hHHHHHHHHHcC
Q 004370 6 ISKYVERSDAVLLVIIPATQTP-DVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS--KALAAVRALLLN 74 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~v-Dlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt--~~~~~~~~iL~n 74 (758)
...++...+.+||+|-+... + ...+-+.+.+++.+.. ...|-|+||+|+.+... ...+.+.+++.+
T Consensus 100 ~~~~~~~~D~~ilVvda~~g-~~~~qt~e~l~~~~~~~~--~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 168 (410)
T 1kk1_A 100 MLAGASLMDGAILVIAANEP-CPRPQTREHLMALQIIGQ--KNIIIAQNKIELVDKEKALENYRQIKEFIEG 168 (410)
T ss_dssp HHHCGGGCSEEEEEEETTSC-SSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhCCEEEEEEECCCC-CCChhHHHHHHHHHHcCC--CcEEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 34556667877776654332 1 3456667777777632 35789999999997432 122345556653
No 186
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=26.91 E-value=52 Score=29.59 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-HHHHHHh-cCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-ALRIAKE-HDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-aLklAre-vDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+...+++|+++...+. ..+.+.. -+...++ ....+.-.|-|+||.|+.+
T Consensus 69 ~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 69 WSQESCLQGGSAYVIVYSIADR-GSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp HHHHHTTTSCSEEEEEEETTCH-HHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred hhHHhhcccCCEEEEEEECCCH-HHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 4566788888888887755431 0111111 1222223 2455678899999999976
No 187
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=26.66 E-value=49 Score=31.48 Aligned_cols=57 Identities=7% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHhcCC----CCeEEEEEecC-CCCCchhch--HHHHHHHhc---CCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVER----SDAVLLVIIPA-TQTPDVSSY--RALRIAKEH---DADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~----~ntIILaVvpA-n~~vDlans--~aLklArev---DP~G~RTIGVlTK~Dlmd~g 61 (758)
.++..|+.. .++||+++-.. +. -.+... ....+.... .+.+...|-|+||+|+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 70 YKLSDYLKTRAKFVKGLIFMVDSTVDP-KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEETTSCT-TCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHHHHHhccccCCEEEEEEECCCCh-HHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 566777766 67887776555 21 022211 111222211 45678899999999998754
No 188
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=26.33 E-value=61 Score=30.47 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=33.9
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHH----HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRA----LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~a----LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+..-+.+||++-..+ ..+-+. +...+...+.+...|-|+||.|+.+.
T Consensus 73 ~~~~~~~~~d~vilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTD----QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHhccCCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 45678888887777665433 222222 33444544557788999999999864
No 189
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.86 E-value=43 Score=30.56 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+.+++|+++-..+. ..+.... ...+.+..+..+...|-|+||.|+.+.
T Consensus 77 ~~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 77 PYWRCYYADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA 134 (183)
T ss_dssp TTGGGTTTTEEEEEEEEETTCT-TTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence 3456788888877776654332 0121111 112222223567889999999999864
No 190
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=25.83 E-value=1.5e+02 Score=31.79 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=38.2
Q ss_pred HHhcCCCCeEEEEEecCCCCC-chhchHHHHHHHhcCCCCCceeeecCCCCCCCcch--hHHHHHHHHHc
Q 004370 7 SKYVERSDAVLLVIIPATQTP-DVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDS--KALAAVRALLL 73 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~v-Dlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt--~~~~~~~~iL~ 73 (758)
..++..-+.+||+|- |+.-+ ...+-+.+.+++.+.- ...|-|+||+|+.+... ...+.+.+++.
T Consensus 99 ~~~~~~~D~~ilVvd-a~~g~~~~qt~e~l~~~~~l~~--~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~ 165 (408)
T 1s0u_A 99 LSGASLMDGAILVIA-ANEPCPQPQTKEHLMALEILGI--DKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165 (408)
T ss_dssp HTTCSCCSEEEEEEE-TTSCSSCHHHHHHHHHHHHTTC--CCEEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred HHhHhhCCEEEEEEE-CCCCCCCchhHHHHHHHHHcCC--CeEEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence 345566677777654 44211 3445566777776532 25789999999997542 22344556665
No 191
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=25.64 E-value=61 Score=29.70 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=29.0
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhch-HH---HHHHHhcCCCCCceeeecCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSY-RA---LRIAKEHDADSTRTVGIISKMD 56 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans-~a---LklArevDP~G~RTIGVlTK~D 56 (758)
.+...|+..-+++|+++-+.+ ..+- +. +...++.. +...|-|+||+|
T Consensus 108 ~~~~~~~~~~d~~i~v~D~~~----~~s~~~~~~~~~~i~~~~--~~piilv~NK~D 158 (208)
T 3clv_A 108 SIVPLYYRGATCAIVVFDISN----SNTLDRAKTWVNQLKISS--NYIIILVANKID 158 (208)
T ss_dssp TTHHHHHTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHS--CCEEEEEEECTT
T ss_pred HHHHHHhcCCCEEEEEEECCC----HHHHHHHHHHHHHHHhhC--CCcEEEEEECCC
Confidence 467789988887777665433 2222 22 22222222 378999999999
No 192
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=25.62 E-value=64 Score=32.40 Aligned_cols=55 Identities=11% Similarity=0.133 Sum_probs=30.5
Q ss_pred HHHHhcC--CCCeEEEEEecCCCCCchhc--hHHHHHHHhcCCCC--CceeeecCCCCCCCcc
Q 004370 5 MISKYVE--RSDAVLLVIIPATQTPDVSS--YRALRIAKEHDADS--TRTVGIISKMDQAEGD 61 (758)
Q Consensus 5 mV~~YI~--~~ntIILaVvpAn~~vDlan--s~aLklArevDP~G--~RTIGVlTK~Dlmd~g 61 (758)
.+..|+. ..++||+++.+-.. .+.. ...++..++.-+.+ ..+|-|+||+|+.++.
T Consensus 110 ~i~~~~~~~~~d~il~v~~~d~~--~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 110 IIKSFLLDKTIDVLLYVDRLDAY--RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHTTTCEECEEEEEEESSCC--CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHhhcCCCCEEEEEEeCCCC--cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 3445554 45666666533222 3332 24455444432222 5799999999998653
No 193
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=25.46 E-value=49 Score=29.55 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=25.8
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-H-HHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-A-LRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-a-LklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+..-+++|+++...+. --+.+.. - ..+.+.....+.-.|-|+||.|+.+.
T Consensus 64 ~~~~~~~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 64 WLPGHCMAMGDAYVIVYSVTDK-GSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp ---------CCEEEEEEETTCH-HHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred hhhhhhhhhCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 4667888889988887755442 0011111 1 12333344556788999999999864
No 194
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=25.01 E-value=50 Score=30.49 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHH----HHHHHh-cCCCCCceeeecCCCCCCC
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRA----LRIAKE-HDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~a----LklAre-vDP~G~RTIGVlTK~Dlmd 59 (758)
.+...|+..-+++|+++...+ ..+-+. +...+. ....+...|-|+||.|+.+
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINN----SKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ------CTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHhhCcCCEEEEEEECcC----HHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 466788988888887665433 222111 222333 3335788999999999986
No 195
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=24.87 E-value=76 Score=34.12 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=36.1
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCc-eeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTR-TVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~R-TIGVlTK~Dlmd 59 (758)
+...|+..-+.+||+|-+.+. .-..+.+.+.+++.. |.. .|-|+||+|+.+
T Consensus 91 ~~~~~~~~aD~~ilVvda~~g-~~~qt~~~l~~~~~~---~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 91 NMITGAAQMDGAILVVSAADG-PMPQTREHILLARQV---GVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHHHHTTCSSEEEEEETTTC-CCHHHHHHHHHHHHT---TCCCEEEEEECGGGCC
T ss_pred HHHHHHHHCCEEEEEEECCCC-CcHHHHHHHHHHHHc---CCCEEEEEEECccccC
Confidence 456678888988888766553 233455567777765 555 679999999985
No 196
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=24.06 E-value=29 Score=35.43 Aligned_cols=60 Identities=15% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~~~~~~iL~ 73 (758)
..+..++++-+.||.+| .|. |...+....+. -+ +...|-|+||.||+++. ..+.|.+.+.
T Consensus 13 ~~~~~~l~~~D~vl~Vv-Dar---~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~~--~~~~~~~~~~ 72 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVR-DAR---APFATSAYGVD-FS---RKETIILLNKVDIADEK--TTKKWVEFFK 72 (262)
T ss_dssp HHHHHHHTTCSEEEEEE-ETT---STTTTSCTTSC-CT---TSEEEEEEECGGGSCHH--HHHHHHHHHH
T ss_pred HHHHHHHhhCCEEEEEe-eCC---CCCcCcChHHH-hc---CCCcEEEEECccCCCHH--HHHHHHHHHH
Confidence 46778888888665554 455 22222211111 12 78999999999999852 2345776664
No 197
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=23.95 E-value=33 Score=30.77 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhc----hHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSS----YRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlan----s~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
+...|+.+-+++|+++-..+ ..+ ..-+...++..+.+...|-|+||.|+.+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 122 (170)
T 1g16_A 68 ITTAYYRGAMGIILVYDITD----ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 122 (170)
T ss_dssp CCHHHHTTEEEEEEEEETTC----HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred hHHHHhccCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence 45678888887777665433 222 1234445555556788999999999954
No 198
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=23.81 E-value=44 Score=31.41 Aligned_cols=52 Identities=13% Similarity=0.187 Sum_probs=29.2
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhch----HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSY----RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans----~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+.+-++||+++-..+ ..+- .-+...+.+.+.+...|-|+||.|+.+.
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 98 ITSSYYRGAHGIIVVYDVTD----QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp CSCC--CCCSEEEECC-CCC----SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHhhcCCEEEEEEECCC----HHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 44567888887777654433 2221 2234456666667889999999999753
No 199
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=23.80 E-value=77 Score=28.84 Aligned_cols=52 Identities=12% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHH-----HHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRAL-----RIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aL-----klArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+..-+++||++...+ ...-+.+ .+.+.....+.-.|-|+||.|+.+.
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 70 FPQTYSIDINGYILVYSVTS----IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME 126 (181)
T ss_dssp CCGGGTTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT
T ss_pred HHHHHHhcCCEEEEEEECCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 45578888888888765433 3222222 3455666667889999999999753
No 200
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=23.68 E-value=41 Score=31.06 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=33.2
Q ss_pred HHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCC
Q 004370 7 SKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAE 59 (758)
Q Consensus 7 ~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd 59 (758)
..|+...+.+|+++-..+. ........+...++..+.+.-.|-|+||+|+.+
T Consensus 78 ~~~~~~ad~~i~v~D~~~~-~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTT-DAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp HHHHHTCSEEEEEEETTTC-CCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred HHHHHhCCEEEEEEECCCC-CCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 3578888877776654332 122223444555555566778999999999965
No 201
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.67 E-value=27 Score=31.24 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=32.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-hhch-HHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-VSSY-RALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-lans-~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+..-+++|+++...+. + +.+- .-+...++.- .+...|-|+||.|+.+.
T Consensus 69 ~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 69 AITKAYYRGAQACVLVFSTTDR--ESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp CCCHHHHTTCCEEEEEEETTCH--HHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCEEEEEEECcCH--HHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcc
Confidence 3567888888888887765442 1 1111 1122222222 35789999999999864
No 202
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=23.66 E-value=1.3e+02 Score=33.31 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHhcCCCCeEEEEEecCCCC------CchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQT------PDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~------vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+..-+++||+|-+.+.. ....+-+.+.+++...- ...|-|+||+|+.+.
T Consensus 126 ~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~--~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 126 PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGI--HNLIIAMNKMDNVDW 186 (483)
T ss_dssp HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTC--CCEEEEEECGGGGTT
T ss_pred HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCC--CcEEEEEECcCcccc
Confidence 35567888899888876554410 01244456677776631 248899999999873
No 203
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=23.50 E-value=28 Score=31.23 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCc-hhchH-HHHHHHhcC--CCCCceeeecCCCCCCCc
Q 004370 3 DAMISKYVERSDAVLLVIIPATQTPD-VSSYR-ALRIAKEHD--ADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 3 ~~mV~~YI~~~ntIILaVvpAn~~vD-lans~-aLklArevD--P~G~RTIGVlTK~Dlmd~ 60 (758)
..+...|+..-+++|+++...+. + +.+.. .+...+++. ..+...|-|+||.|+.+.
T Consensus 65 ~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 65 PAMQRLSISKGHAFILVYSITSR--QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCH--HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred HHHHHHhcccCCEEEEEEECcCH--HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 35778888888888887765442 1 22111 223333332 235778999999999764
No 204
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=23.47 E-value=76 Score=29.24 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=34.2
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+.+.+++|+++-..+. -.+.+.. ..++.+.....+...|-|+||.|+.+.
T Consensus 82 ~~~~~~~~~d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 82 YWRCYFSDTDAVIYVVDSTDR-DRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp CCSSSSTTCCEEEEEEETTCC-TTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHhhcCCEEEEEEeCCCH-HHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 345688888888877655432 1122211 223334444567889999999999875
No 205
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=23.41 E-value=1.2e+02 Score=28.01 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=34.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-HH----HHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-AL----RIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-aL----klArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+..-+++|+++-..+ ...-+ +. .+.+.....+.-.|-|.||.|+.+..
T Consensus 75 ~~~~~~~~~~~~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 133 (181)
T 1fzq_A 75 PYWRSYFENTDILIYVIDSAD----RKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133 (181)
T ss_dssp HHHHHHHTTCSEEEEEEETTC----GGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred HHHHHHhCCCCEEEEEEECcC----HHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence 567889999998888765433 22212 11 12222334567899999999998653
No 206
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=23.26 E-value=36 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.064 Sum_probs=34.1
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhc-hHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSS-YRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlan-s~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+..-+++|+++-..+. ..+.+ ..-+...+.....+.-.|-|+||.|+.+.
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSR-ETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCH-HHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred HHHHHhccCCEEEEEEECcCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 456788888988887755442 00111 11233344444556789999999999753
No 207
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=23.19 E-value=42 Score=30.73 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=30.5
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchH----HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYR----ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~----aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+.+-+++|+++-..+ ..+-+ -+...++..+.+...|-|+||.|+.+.
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITN----EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTC----HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred hHHHHHhcCCEEEEEEECcC----HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 45568888888887665433 22211 233344444456788999999999864
No 208
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=22.91 E-value=53 Score=30.83 Aligned_cols=56 Identities=11% Similarity=0.233 Sum_probs=33.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-++||+++-..+. -.+.+.. ...+.+..+..+...|-|+||.|+.+.
T Consensus 88 ~~~~~~~~~~d~iilv~D~~~~-~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 88 PLWRHYFQNTQGLIFVVDSNDR-ERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp TTHHHHHHTCCEEEEEEETTCG-GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHhccCCEEEEEEECCCH-HHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 4667889999988877654331 0122111 112223333456789999999999764
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=22.91 E-value=44 Score=32.74 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHh-cCC-CCCceeeecCCCCCCCc
Q 004370 6 ISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKE-HDA-DSTRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~~ntIILaVvpAn~~vDlans~aLklAre-vDP-~G~RTIGVlTK~Dlmd~ 60 (758)
+..|...++++||++ +++. .+......+....+ +.. .+..+|-|+||.|+.+.
T Consensus 106 ~~~~~~~~~~~l~v~-d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 106 ILLTSPGPHALLLVV-PLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp HHHTTTCCSEEEEEE-ETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred HHhcCCCCcEEEEEe-eCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 344555677666655 5542 23444445544432 111 13479999999999874
No 210
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=22.72 E-value=1e+02 Score=30.76 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHhcCC--CCeEEEEEecCCCCCchh--chHHHHHHHhcCCCC--CceeeecCCCCCCCc
Q 004370 6 ISKYVER--SDAVLLVIIPATQTPDVS--SYRALRIAKEHDADS--TRTVGIISKMDQAEG 60 (758)
Q Consensus 6 V~~YI~~--~ntIILaVvpAn~~vDla--ns~aLklArevDP~G--~RTIGVlTK~Dlmd~ 60 (758)
+.+|+.. .++||+++ .++. ..+. ....++..++.-+.+ ..+|-|+||.|+.+.
T Consensus 108 i~~~l~~~~~~~il~V~-~~d~-~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 108 IKGFLVNRTIDVLLYVD-RLDV-YAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HHHHTTTCEECEEEEEE-ESSC-SCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHHHHhcCCCCEEEEEE-cCCC-CCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 4455543 35555543 3332 1333 234566555543222 378999999999754
No 211
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=22.68 E-value=97 Score=33.27 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCc-eeeecCCCCCCC
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTR-TVGIISKMDQAE 59 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~R-TIGVlTK~Dlmd 59 (758)
+...|+..-+.+||+|-+.+. +-..+-+.+.+++.. |.. .|-|+||+|+.+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g-~~~qt~e~l~~~~~~---~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDG-PMPQTREHLLLARQI---GVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTC-SCHHHHHHHHHHHHT---TCCCEEEEEECGGGCS
T ss_pred HHHhhHhhCCEEEEEEECCCC-CCHHHHHHHHHHHHc---CCCeEEEEEECcccCC
Confidence 456778888988887765443 234455667777765 566 478999999985
No 212
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=22.45 E-value=94 Score=33.38 Aligned_cols=55 Identities=11% Similarity=0.098 Sum_probs=36.4
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
+...|+..-+++||+|-+.+......+.+-+.+++.... ...|-|+||+|+.+..
T Consensus 91 ~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~--~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 91 TMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGV--KNLIIVQNKVDVVSKE 145 (403)
T ss_dssp HHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTC--CCEEEEEECGGGSCHH
T ss_pred HHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCC--CCEEEEEECccccchH
Confidence 456677888888887665543112344556677776642 3578999999999753
No 213
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=22.27 E-value=25 Score=32.12 Aligned_cols=56 Identities=13% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH--HHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR--ALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~--aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+..-+++|+++-..+. ..+.+.. -+...++..| +...|-|+||.|+.+..
T Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 125 (186)
T 1mh1_A 68 RLRPLSYPQTDVSLICFSLVSP-ASFENVRAKWYPEVRHHCP-NTPIILVGTKLDLRDDK 125 (186)
T ss_dssp TTGGGGCTTCSEEEEEEETTCH-HHHHHHHHTHHHHHHHHST-TSCEEEEEECHHHHTCH
T ss_pred HHHHHhccCCcEEEEEEECCCh-hhHHHHHHHHHHHHHHhCC-CCCEEEEeEcccccccc
Confidence 3556788888888887655431 0122221 2344555545 67899999999998753
No 214
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=22.22 E-value=62 Score=30.01 Aligned_cols=55 Identities=11% Similarity=0.044 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCc-hhch--HHHHHHHhcCCCCCceeeecCCCCCCCcc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPD-VSSY--RALRIAKEHDADSTRTVGIISKMDQAEGD 61 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vD-lans--~aLklArevDP~G~RTIGVlTK~Dlmd~g 61 (758)
.+...|+.+-+++||++-..+. + +.+. .-+...++..| +...|-|+||.|+.+..
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~-~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 81 RLRPLSYPMTDVFLICFSVVNP--ASFQNVKEEWVPELKEYAP-NVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCH--HHHHHHHHTHHHHHHHHST-TCCEEEEEECTTSTTCH
T ss_pred HHHHHhcCCCCEEEEEEECCCH--HHHHHHHHHHHHHHHHhCC-CCCEEEEEEChhhcccc
Confidence 3566788888888887654431 1 2222 12344455444 57899999999998753
No 215
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=22.20 E-value=3.6e+02 Score=23.52 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 004370 147 NRMSLRVPKLLSGLQGKSQIVQDELLKLGDQILENTEGTKALALQLCREFEDKFLQH 203 (758)
Q Consensus 147 ~hI~~~LP~l~~~I~~~l~~~e~eL~~LG~~~~~~~e~~~~~ll~li~~F~~~f~~~ 203 (758)
++|...+-.+...+...-.+++.=|+++|...+. .+..-.+.-.+|.+..+.+.++
T Consensus 5 ~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~-~~~lEsiAAKIIkDisdkId~C 60 (95)
T 3k4t_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGSQNPI-KESLETVAAKIVNDLTKLINDC 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHHHHHHHHHHhcC
Confidence 5677778888888888888889999999987762 2233455667777777776553
No 216
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=21.48 E-value=52 Score=30.92 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCchhch-HHHHHH----HhcCCCCCceeeecCCCCCCCc
Q 004370 5 MISKYVERSDAVLLVIIPATQTPDVSSY-RALRIA----KEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 5 mV~~YI~~~ntIILaVvpAn~~vDlans-~aLklA----revDP~G~RTIGVlTK~Dlmd~ 60 (758)
+...|+..-+.+|+++...+ ...- .+.... +.....+...|-|+||.|+.+.
T Consensus 88 ~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 88 LPYSFIIGVHGYVLVYSVTS----LHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp CCGGGTTTCCEEEEEEETTC----HHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHHHhcCCEEEEEEeCCC----HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 45678888888888765543 2111 122222 2223446788999999999853
No 217
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=21.13 E-value=83 Score=27.88 Aligned_cols=56 Identities=11% Similarity=0.085 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchH-HHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYR-ALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~-aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
.+...|+.+-+++|+++...+. ..+.+.. -+....+.-..+.-.|=|.||.|+.+.
T Consensus 70 ~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 70 SLAPMYYRGAQAAIVVYDITNE-ESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp GGHHHHHTTCSEEEEEEETTCH-HHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred hhhHHhccCCCEEEEEEECCCH-HHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 5678899999988877655431 0011111 122233332334556666799999864
No 218
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=20.66 E-value=1.3e+02 Score=35.01 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=43.3
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHHc
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALLL 73 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL~ 73 (758)
..+..|+..-+.+|++|-+.+. +...+...++.+++. +...|-|+||+|+...... ..+.+.+.+.
T Consensus 90 ~~~~~~l~~aD~~llVvDa~~g-~~~~~~~~~~~~~~~---~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~ 156 (693)
T 2xex_A 90 VEVERSLRVLDGAVTVLDAQSG-VEPQTETVWRQATTY---GVPRIVFVNKMDKLGANFEYSVSTLHDRLQ 156 (693)
T ss_dssp HHHHHHHHHCSEEEEEEETTTB-SCHHHHHHHHHHHHT---TCCEEEEEECTTSTTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCEEEEEECCCCC-CcHHHHHHHHHHHHc---CCCEEEEEECCCccccchHHHHHHHHHHhC
Confidence 3567788888877777765553 344555556666654 7889999999999875322 2344555553
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=20.57 E-value=59 Score=36.11 Aligned_cols=48 Identities=21% Similarity=0.245 Sum_probs=33.6
Q ss_pred CCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchhHH
Q 004370 12 RSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSKAL 65 (758)
Q Consensus 12 ~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~~~ 65 (758)
+|..+ |.|+.|.. .++++..|+.+++...=|.-||||+|....|..+.
T Consensus 212 ~pd~v-lLVvDA~~-----gq~a~~~a~~f~~~~~i~gVIlTKlD~~~~gG~~l 259 (443)
T 3dm5_A 212 HPHEV-ILVIDGTI-----GQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGAL 259 (443)
T ss_dssp CCSEE-EEEEEGGG-----GGGHHHHHHHHHHSCTTEEEEEECCSSCSSHHHHH
T ss_pred cCceE-EEEEeCCC-----chhHHHHHHHHHhhCCCeEEEEECCCCcccccHHH
Confidence 46655 44555552 36788888888877666666889999998776543
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.34 E-value=69 Score=35.41 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=32.9
Q ss_pred eEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCc
Q 004370 15 AVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEG 60 (758)
Q Consensus 15 tIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~ 60 (758)
++|+.|+|+.. .+...| +.+++.+. .+.+.|-|++|.|.+.+
T Consensus 150 ~~v~fI~d~~~--~l~~~D-ieilk~L~-~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 150 VCLYFIAPTGH--SLKSLD-LVTMKKLD-SKVNIIPIIAKADAISK 191 (427)
T ss_dssp EEEEEECCCC-----CHHH-HHHHHHTC-SCSEEEEEESCGGGSCH
T ss_pred EEEEEEeCCCC--CCCHHH-HHHHHHHh-hCCCEEEEEcchhccch
Confidence 46888899885 666666 78999998 78999999999999964
No 221
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=20.18 E-value=1.5e+02 Score=34.70 Aligned_cols=65 Identities=14% Similarity=0.191 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCeEEEEEecCCCCCchhchHHHHHHHhcCCCCCceeeecCCCCCCCcchh-HHHHHHHHH
Q 004370 4 AMISKYVERSDAVLLVIIPATQTPDVSSYRALRIAKEHDADSTRTVGIISKMDQAEGDSK-ALAAVRALL 72 (758)
Q Consensus 4 ~mV~~YI~~~ntIILaVvpAn~~vDlans~aLklArevDP~G~RTIGVlTK~Dlmd~gt~-~~~~~~~iL 72 (758)
.++..|+..-+.+||+|-+.+. +...+...++.+++ .+...|-|+||+|+...... ..+.+.+.|
T Consensus 97 ~~~~~~l~~aD~aIlVvDa~~g-v~~qt~~~~~~~~~---~~ip~ilviNKiD~~~~~~~~~~~~l~~~l 162 (704)
T 2rdo_7 97 IEVERSMRVLDGAVMVYCAVGG-VQPQSETVWRQANK---YKVPRIAFVNKMDRMGANFLKVVNQIKTRL 162 (704)
T ss_pred HHHHHHHHHCCEEEEEEeCCCC-CcHHHHHHHHHHHH---cCCCEEEEEeCCCcccccHHHHHHHHHHHh
Confidence 4677888888888887766553 33344555666654 46889999999999864432 223344444
Done!