Query 004372
Match_columns 758
No_of_seqs 329 out of 2329
Neff 8.0
Searched_HMMs 46136
Date Thu Mar 28 22:19:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 4E-148 8E-153 1316.3 77.7 722 7-734 18-796 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3E-120 6E-125 1061.4 56.0 715 11-736 2-768 (769)
3 PRK03562 glutathione-regulated 100.0 3E-44 6.5E-49 417.3 42.7 377 32-434 5-420 (621)
4 PRK03659 glutathione-regulated 100.0 2.4E-43 5.3E-48 409.1 42.7 378 32-434 5-420 (601)
5 PRK10669 putative cation:proto 100.0 5.6E-43 1.2E-47 405.3 40.6 337 34-391 8-390 (558)
6 COG0475 KefB Kef-type K+ trans 100.0 1.2E-41 2.6E-46 375.3 39.5 341 32-392 6-387 (397)
7 PRK05326 potassium/proton anti 100.0 3.1E-36 6.8E-41 348.8 33.4 345 31-391 5-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 8.6E-37 1.9E-41 338.7 -3.6 336 40-389 4-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 1.1E-31 2.5E-36 283.9 26.6 233 42-293 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 3.1E-30 6.7E-35 257.7 26.1 343 28-393 3-391 (408)
11 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 2.8E-24 6.1E-29 245.9 33.6 333 38-389 4-408 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 9.8E-24 2.1E-28 242.1 34.6 329 20-361 3-386 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 3.1E-21 6.7E-26 214.9 34.7 343 32-390 6-407 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 5E-20 1.1E-24 210.8 31.8 332 47-390 25-417 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.8 1.8E-19 3.8E-24 189.3 23.3 317 32-365 7-360 (574)
16 PRK14853 nhaA pH-dependent sod 99.7 2E-15 4.3E-20 164.1 29.8 254 91-358 61-363 (423)
17 PRK11175 universal stress prot 99.7 2.2E-16 4.8E-21 169.9 16.4 281 414-731 4-299 (305)
18 KOG1965 Sodium/hydrogen exchan 99.7 1.4E-15 3E-20 167.8 18.7 349 34-391 37-456 (575)
19 KOG4505 Na+/H+ antiporter [Ino 99.5 8.3E-13 1.8E-17 134.9 20.5 310 38-357 20-382 (467)
20 cd01988 Na_H_Antiporter_C The 99.5 2.9E-13 6.2E-18 126.4 12.2 131 415-569 1-131 (132)
21 TIGR00773 NhaA Na+/H+ antiport 99.5 3.9E-12 8.5E-17 136.0 21.1 254 91-358 51-344 (373)
22 cd01989 STK_N The N-terminal d 99.2 1.2E-10 2.7E-15 110.9 12.1 141 415-573 1-146 (146)
23 PRK14856 nhaA pH-dependent sod 99.2 2.1E-09 4.6E-14 116.9 21.1 252 91-358 67-398 (438)
24 PRK15456 universal stress prot 99.1 1.2E-10 2.5E-15 110.7 8.7 133 414-568 3-140 (142)
25 PRK09560 nhaA pH-dependent sod 99.1 5.9E-09 1.3E-13 111.9 21.3 253 91-358 58-353 (389)
26 PRK15005 universal stress prot 99.1 3.2E-10 7E-15 107.7 9.8 135 414-568 3-142 (144)
27 PRK09561 nhaA pH-dependent sod 99.1 8.7E-09 1.9E-13 110.4 21.0 252 92-358 59-351 (388)
28 PRK14854 nhaA pH-dependent sod 99.1 1.3E-08 2.7E-13 108.8 21.9 255 91-359 55-349 (383)
29 PRK15118 universal stress glob 99.0 8.6E-10 1.9E-14 104.9 9.9 132 414-568 4-136 (144)
30 PRK14855 nhaA pH-dependent sod 99.0 1.9E-08 4.1E-13 109.2 21.2 250 91-359 62-384 (423)
31 PRK09982 universal stress prot 99.0 7E-10 1.5E-14 105.4 9.0 132 414-568 4-136 (142)
32 cd01987 USP_OKCHK USP domain i 99.0 9.8E-10 2.1E-14 101.6 9.6 121 415-568 1-122 (124)
33 PF00582 Usp: Universal stress 99.0 1.3E-09 2.7E-14 101.6 8.9 133 414-569 3-139 (140)
34 KOG1966 Sodium/hydrogen exchan 99.0 7.7E-10 1.7E-14 122.1 8.0 335 43-389 53-448 (670)
35 PRK10116 universal stress prot 98.9 1.9E-08 4.2E-13 95.3 11.3 133 414-569 4-137 (142)
36 PF06965 Na_H_antiport_1: Na+/ 98.8 1.2E-08 2.6E-13 109.3 10.3 257 91-361 54-354 (378)
37 cd00293 USP_Like Usp: Universa 98.8 6.3E-08 1.4E-12 89.0 11.1 129 415-568 1-129 (130)
38 COG3004 NhaA Na+/H+ antiporter 98.7 1.2E-06 2.7E-11 90.2 20.8 246 94-359 64-355 (390)
39 PRK11175 universal stress prot 98.7 2.4E-08 5.2E-13 107.4 8.9 143 413-574 152-303 (305)
40 COG0589 UspA Universal stress 98.3 3.7E-06 8E-11 80.0 11.0 142 414-569 6-150 (154)
41 PF05684 DUF819: Protein of un 98.3 0.0012 2.6E-08 72.8 31.5 288 55-370 24-358 (378)
42 PRK12460 2-keto-3-deoxyglucona 98.3 0.00011 2.3E-09 77.3 21.2 252 101-392 51-307 (312)
43 cd01989 STK_N The N-terminal d 98.2 9.7E-06 2.1E-10 77.0 10.5 135 588-732 1-145 (146)
44 cd01988 Na_H_Antiporter_C The 98.1 3.5E-05 7.6E-10 71.5 11.9 129 588-731 1-132 (132)
45 PF00582 Usp: Universal stress 98.1 1.1E-05 2.3E-10 74.9 8.2 134 586-730 2-139 (140)
46 PRK15005 universal stress prot 98.0 5.2E-05 1.1E-09 71.8 10.9 131 586-731 2-144 (144)
47 PRK10116 universal stress prot 97.9 3.2E-05 6.9E-10 73.1 7.6 129 586-731 3-138 (142)
48 cd01987 USP_OKCHK USP domain i 97.9 7.6E-05 1.6E-09 68.7 9.8 123 588-730 1-123 (124)
49 PRK12652 putative monovalent c 97.8 9.3E-05 2E-09 80.6 10.9 109 413-537 5-124 (357)
50 PRK09982 universal stress prot 97.8 9E-05 2E-09 70.3 9.6 130 586-731 3-138 (142)
51 PF03812 KdgT: 2-keto-3-deoxyg 97.7 0.0045 9.8E-08 64.9 20.7 169 101-300 51-222 (314)
52 PRK15456 universal stress prot 97.6 0.00054 1.2E-08 64.8 11.7 132 586-731 2-142 (142)
53 PRK15118 universal stress glob 97.6 9.6E-05 2.1E-09 70.1 6.5 129 586-732 3-139 (144)
54 cd00293 USP_Like Usp: Universa 97.5 0.0006 1.3E-08 62.2 9.7 127 588-730 1-130 (130)
55 TIGR00793 kdgT 2-keto-3-deoxyg 97.5 0.0061 1.3E-07 63.5 17.7 257 101-391 51-312 (314)
56 COG3180 AbrB Putative ammonia 97.2 0.43 9.4E-06 51.4 29.1 295 33-358 7-318 (352)
57 PF03390 2HCT: 2-hydroxycarbox 97.2 0.062 1.3E-06 59.1 21.8 247 110-363 109-394 (414)
58 PRK12652 putative monovalent c 97.1 0.0025 5.3E-08 69.6 10.0 104 585-693 4-123 (357)
59 PF05145 AmoA: Putative ammoni 97.1 0.56 1.2E-05 50.7 27.7 250 96-360 26-287 (318)
60 COG0385 Predicted Na+-dependen 97.0 0.17 3.6E-06 54.0 22.1 256 92-390 35-305 (319)
61 PRK05274 2-keto-3-deoxyglucona 97.0 0.094 2E-06 56.6 20.4 195 103-330 55-252 (326)
62 COG0798 ACR3 Arsenite efflux p 96.9 0.45 9.7E-06 50.7 24.4 268 57-354 18-296 (342)
63 COG3493 CitS Na+/citrate sympo 96.9 0.098 2.1E-06 56.0 19.0 276 84-363 94-413 (438)
64 PF13593 DUF4137: SBF-like CPA 96.8 0.35 7.6E-06 52.2 23.9 220 94-347 30-269 (313)
65 PRK03818 putative transporter; 96.7 1.3 2.8E-05 51.7 29.0 79 59-145 33-114 (552)
66 PF03616 Glt_symporter: Sodium 96.7 0.84 1.8E-05 50.4 26.2 229 97-340 66-342 (368)
67 TIGR00832 acr3 arsenical-resis 96.7 0.28 6E-06 53.4 21.7 235 98-354 46-297 (328)
68 TIGR00841 bass bile acid trans 96.6 0.69 1.5E-05 49.3 24.2 231 98-357 11-249 (286)
69 PRK03562 glutathione-regulated 96.5 0.099 2.2E-06 61.9 18.6 118 225-346 9-127 (621)
70 PRK10490 sensor protein KdpD; 96.5 0.01 2.3E-07 73.2 10.6 123 412-569 249-372 (895)
71 TIGR00698 conserved hypothetic 96.5 1.2 2.6E-05 48.3 24.7 84 51-143 26-110 (335)
72 COG0786 GltS Na+/glutamate sym 96.4 0.23 5E-06 53.9 18.5 284 34-338 11-342 (404)
73 PF03956 DUF340: Membrane prot 96.3 0.041 9E-07 54.7 11.6 163 60-259 2-179 (191)
74 TIGR00932 2a37 transporter, mo 96.3 0.19 4E-06 53.2 17.3 131 232-368 3-135 (273)
75 PRK03659 glutathione-regulated 96.2 0.22 4.7E-06 58.9 18.8 115 226-344 10-125 (601)
76 TIGR00783 ccs citrate carrier 96.2 0.67 1.4E-05 50.2 20.3 248 110-363 40-327 (347)
77 PRK10669 putative cation:proto 96.1 0.26 5.7E-06 57.7 18.6 133 228-366 13-146 (558)
78 TIGR00210 gltS sodium--glutama 96.0 3.4 7.5E-05 46.0 28.8 279 34-337 9-337 (398)
79 TIGR03802 Asp_Ala_antiprt aspa 95.8 2.2 4.8E-05 49.9 24.5 81 39-135 13-98 (562)
80 COG0475 KefB Kef-type K+ trans 95.7 0.41 8.9E-06 53.5 17.4 141 225-370 10-153 (397)
81 PF03601 Cons_hypoth698: Conse 95.5 0.51 1.1E-05 50.6 16.4 128 228-358 5-138 (305)
82 COG0589 UspA Universal stress 95.4 0.21 4.6E-06 46.9 11.9 136 586-732 5-152 (154)
83 PF03601 Cons_hypoth698: Conse 95.4 2.3 5.1E-05 45.6 20.9 82 52-143 22-104 (305)
84 PRK04972 putative transporter; 95.3 3.7 8.1E-05 48.0 23.9 91 40-146 20-114 (558)
85 PRK05326 potassium/proton anti 95.3 0.41 8.9E-06 56.2 16.1 117 228-347 13-132 (562)
86 PF06826 Asp-Al_Ex: Predicted 95.2 0.42 9.1E-06 46.6 13.1 114 52-181 19-136 (169)
87 COG2855 Predicted membrane pro 94.8 0.49 1.1E-05 50.6 13.3 115 239-356 31-145 (334)
88 COG2205 KdpD Osmosensitive K+ 94.6 0.15 3.3E-06 59.9 9.8 121 411-564 246-366 (890)
89 COG5505 Predicted integral mem 94.6 7.1 0.00015 41.1 27.5 257 90-364 55-358 (384)
90 PLN03159 cation/H(+) antiporte 94.4 1.2 2.6E-05 54.6 17.3 74 225-299 47-130 (832)
91 TIGR00930 2a30 K-Cl cotranspor 94.0 22 0.00047 44.5 45.1 131 413-574 575-710 (953)
92 COG2985 Predicted permease [Ge 94.0 3.5 7.7E-05 46.1 17.9 78 98-184 62-146 (544)
93 TIGR00698 conserved hypothetic 94.0 2.5 5.5E-05 45.9 16.9 125 229-356 10-142 (335)
94 TIGR00844 c_cpa1 na(+)/h(+) an 93.9 1.4 3.1E-05 52.7 15.9 119 228-348 21-146 (810)
95 TIGR01625 YidE_YbjL_dupl AspT/ 93.2 0.45 9.7E-06 45.7 8.5 114 56-183 21-139 (154)
96 TIGR00831 a_cpa1 Na+/H+ antipo 93.2 1.1 2.3E-05 52.2 13.3 120 227-350 4-124 (525)
97 PF01758 SBF: Sodium Bile acid 93.1 5.6 0.00012 39.4 16.7 28 99-126 2-29 (187)
98 cd01984 AANH_like Adenine nucl 93.1 0.28 6E-06 41.8 6.4 48 513-566 35-83 (86)
99 TIGR03802 Asp_Ala_antiprt aspa 91.9 1.4 2.9E-05 51.7 12.1 117 53-183 412-532 (562)
100 TIGR03082 Gneg_AbrB_dup membra 91.0 9.3 0.0002 36.7 14.8 123 229-358 3-128 (156)
101 TIGR03082 Gneg_AbrB_dup membra 90.6 1.9 4E-05 41.6 9.6 97 40-150 3-101 (156)
102 TIGR00210 gltS sodium--glutama 88.1 6 0.00013 44.1 12.5 168 35-212 222-394 (398)
103 TIGR00946 2a69 he Auxin Efflux 87.8 12 0.00027 40.4 14.7 139 53-212 179-317 (321)
104 PRK10490 sensor protein KdpD; 86.9 2.9 6.2E-05 52.0 10.2 124 585-730 249-372 (895)
105 PRK03359 putative electron tra 85.8 1.8 4E-05 45.2 6.5 109 591-716 30-149 (256)
106 PRK04972 putative transporter; 85.3 7.2 0.00016 45.7 11.8 115 55-183 409-527 (558)
107 PF03956 DUF340: Membrane prot 85.0 8.4 0.00018 38.4 10.5 49 306-354 58-106 (191)
108 COG0025 NhaP NhaP-type Na+/H+ 83.8 22 0.00048 40.2 14.6 123 225-350 10-136 (429)
109 TIGR00808 malonate_madM malona 83.7 12 0.00027 37.0 10.5 101 42-149 23-133 (254)
110 TIGR03136 malonate_biotin Na+- 82.4 3 6.5E-05 45.0 6.4 115 274-396 101-218 (399)
111 TIGR00946 2a69 he Auxin Efflux 82.1 79 0.0017 34.1 28.9 135 246-388 182-319 (321)
112 PF03547 Mem_trans: Membrane t 81.8 11 0.00024 41.8 11.2 136 247-390 8-146 (385)
113 COG2855 Predicted membrane pro 81.4 84 0.0018 34.0 23.6 88 50-147 31-118 (334)
114 PRK12460 2-keto-3-deoxyglucona 81.2 12 0.00027 39.9 10.4 75 59-146 169-243 (312)
115 PF03977 OAD_beta: Na+-transpo 81.2 12 0.00026 40.1 10.1 112 276-395 67-180 (360)
116 PRK12342 hypothetical protein; 80.9 3.5 7.6E-05 43.0 6.2 96 591-704 29-137 (254)
117 PF03616 Glt_symporter: Sodium 80.2 23 0.00051 39.1 12.8 97 36-139 225-323 (368)
118 PRK03818 putative transporter; 79.9 37 0.0008 39.8 14.9 106 59-178 403-513 (552)
119 COG2431 Predicted membrane pro 78.9 28 0.00061 36.3 11.7 77 58-147 108-188 (297)
120 PF05145 AmoA: Putative ammoni 78.3 14 0.00031 40.0 10.2 102 35-150 155-258 (318)
121 COG3263 NhaP-type Na+/H+ and K 77.9 28 0.00062 38.7 12.0 115 234-349 20-135 (574)
122 COG0679 Predicted permeases [G 77.2 1.1E+02 0.0024 32.9 27.6 138 244-387 166-305 (311)
123 COG0786 GltS Na+/glutamate sym 76.0 25 0.00055 38.6 11.0 99 34-139 224-324 (404)
124 KOG2310 DNA repair exonuclease 75.9 3.7 8E-05 46.3 4.8 78 515-595 41-125 (646)
125 PF00999 Na_H_Exchanger: Sodiu 74.5 0.94 2E-05 50.2 -0.2 113 230-346 5-123 (380)
126 COG3329 Predicted permease [Ge 73.9 91 0.002 33.1 13.8 121 245-370 16-138 (372)
127 COG4651 RosB Kef-type K+ trans 73.4 22 0.00047 37.6 9.3 131 226-364 11-144 (408)
128 TIGR01625 YidE_YbjL_dupl AspT/ 72.1 15 0.00033 35.2 7.5 87 248-334 24-116 (154)
129 TIGR02432 lysidine_TilS_N tRNA 71.4 21 0.00045 35.2 8.7 36 588-623 1-36 (189)
130 COG3180 AbrB Putative ammonia 71.3 26 0.00057 38.0 9.8 110 29-150 181-291 (352)
131 COG2086 FixA Electron transfer 70.7 17 0.00038 38.0 8.1 108 591-717 31-149 (260)
132 PRK09903 putative transporter 70.3 82 0.0018 33.9 13.7 118 54-191 171-289 (314)
133 PF01012 ETF: Electron transfe 69.8 11 0.00024 36.3 6.2 122 597-744 15-147 (164)
134 COG2985 Predicted permease [Ge 69.6 21 0.00045 40.2 8.6 107 58-178 397-507 (544)
135 PF05982 DUF897: Domain of unk 68.1 24 0.00052 37.9 8.6 43 101-146 213-260 (327)
136 PRK15475 oxaloacetate decarbox 62.7 9.7 0.00021 41.2 4.4 133 275-420 131-270 (433)
137 PRK04288 antiholin-like protei 62.2 1.9E+02 0.0042 29.7 16.0 83 302-388 92-174 (232)
138 PF03977 OAD_beta: Na+-transpo 61.9 2.4E+02 0.0052 30.6 24.6 238 36-302 4-268 (360)
139 PRK15476 oxaloacetate decarbox 61.9 10 0.00022 41.0 4.3 133 275-420 131-270 (433)
140 PRK15477 oxaloacetate decarbox 61.8 10 0.00022 41.0 4.3 133 275-420 131-270 (433)
141 PF01171 ATP_bind_3: PP-loop f 60.7 21 0.00046 35.0 6.3 57 588-655 1-57 (182)
142 COG0679 Predicted permeases [G 59.3 2E+02 0.0043 31.0 14.0 104 247-353 11-116 (311)
143 TIGR02039 CysD sulfate adenyly 59.3 23 0.0005 37.8 6.5 38 588-625 21-58 (294)
144 COG2205 KdpD Osmosensitive K+ 59.1 56 0.0012 39.4 10.1 126 585-730 247-372 (890)
145 COG1346 LrgB Putative effector 58.7 2.2E+02 0.0047 29.1 15.7 109 267-388 63-171 (230)
146 PRK12563 sulfate adenylyltrans 58.6 17 0.00037 39.0 5.5 39 587-625 38-76 (312)
147 PF03547 Mem_trans: Membrane t 58.4 2.9E+02 0.0062 30.4 21.6 87 246-333 244-335 (385)
148 PRK05253 sulfate adenylyltrans 57.9 32 0.0007 36.9 7.5 38 587-624 28-65 (301)
149 PRK10711 hypothetical protein; 56.7 2.4E+02 0.0051 29.1 13.0 83 302-388 87-169 (231)
150 cd01992 PP-ATPase N-terminal d 56.0 54 0.0012 31.9 8.4 37 588-624 1-37 (185)
151 TIGR01109 Na_pump_decarbB sodi 54.3 39 0.00085 36.2 7.1 113 274-394 59-179 (354)
152 PF13593 DUF4137: SBF-like CPA 52.9 1.7E+02 0.0038 31.5 12.2 92 247-341 6-98 (313)
153 TIGR01109 Na_pump_decarbB sodi 52.7 3.3E+02 0.0072 29.4 17.4 75 224-301 193-267 (354)
154 cd01984 AANH_like Adenine nucl 51.9 16 0.00035 30.8 3.3 34 589-623 1-34 (86)
155 PRK06806 fructose-bisphosphate 51.3 75 0.0016 33.7 8.8 115 495-617 13-131 (281)
156 COG3969 Predicted phosphoadeno 51.1 33 0.00071 36.9 5.9 40 585-624 26-66 (407)
157 TIGR03136 malonate_biotin Na+- 49.8 3.9E+02 0.0085 29.4 22.4 241 34-303 22-306 (399)
158 PF03652 UPF0081: Uncharacteri 49.0 29 0.00062 32.5 4.7 60 512-574 37-97 (135)
159 TIGR00840 b_cpa1 sodium/hydrog 48.4 4.1E+02 0.0089 31.3 15.1 74 277-352 69-151 (559)
160 PRK04125 murein hydrolase regu 47.9 2.5E+02 0.0054 26.6 10.7 77 230-309 17-98 (141)
161 COG1346 LrgB Putative effector 47.9 3.3E+02 0.007 27.9 16.5 129 37-184 11-144 (230)
162 PF05684 DUF819: Protein of un 45.2 2.8E+02 0.006 30.9 12.4 123 246-373 26-152 (378)
163 COG1646 Predicted phosphate-bi 43.8 67 0.0015 32.8 6.6 62 501-570 15-77 (240)
164 PF03812 KdgT: 2-keto-3-deoxyg 43.1 91 0.002 33.4 7.8 74 60-146 175-248 (314)
165 PRK10660 tilS tRNA(Ile)-lysidi 42.5 1.4E+02 0.003 33.9 9.8 59 586-655 15-74 (436)
166 TIGR00659 conserved hypothetic 41.2 4.1E+02 0.009 27.2 15.9 83 302-388 86-168 (226)
167 PRK09903 putative transporter 41.1 4.8E+02 0.01 27.9 29.8 135 246-389 173-310 (314)
168 PRK04288 antiholin-like protei 40.5 4.3E+02 0.0093 27.2 19.9 70 104-183 76-146 (232)
169 COG1883 OadB Na+-transporting 39.1 5E+02 0.011 27.6 14.0 77 225-304 209-285 (375)
170 TIGR00783 ccs citrate carrier 38.7 2.7E+02 0.0058 30.5 10.7 90 48-147 195-291 (347)
171 cd01993 Alpha_ANH_like_II This 38.4 75 0.0016 30.8 6.2 37 588-624 1-39 (185)
172 PF04172 LrgB: LrgB-like famil 38.4 4.4E+02 0.0096 26.8 13.3 82 302-387 76-157 (215)
173 TIGR02057 PAPS_reductase phosp 37.9 1.8E+02 0.0038 29.8 8.9 35 587-624 26-60 (226)
174 PRK00109 Holliday junction res 37.0 65 0.0014 30.2 5.1 58 514-574 42-99 (138)
175 TIGR00793 kdgT 2-keto-3-deoxyg 37.0 2E+02 0.0044 30.7 9.1 75 59-146 174-248 (314)
176 TIGR02432 lysidine_TilS_N tRNA 34.9 2.3E+02 0.005 27.6 9.1 95 415-536 1-109 (189)
177 PRK10440 iron-enterobactin tra 34.7 6.4E+02 0.014 27.5 14.3 59 50-109 54-112 (330)
178 PRK04125 murein hydrolase regu 34.3 3.3E+02 0.0072 25.7 9.2 27 31-57 7-33 (141)
179 PF06826 Asp-Al_Ex: Predicted 34.0 4.5E+02 0.0098 25.6 11.9 88 243-334 21-115 (169)
180 TIGR02359 thiW thiW protein. L 33.5 4.5E+02 0.0098 25.4 12.8 48 58-110 34-84 (160)
181 PF10136 SpecificRecomb: Site- 33.1 2.6E+02 0.0055 33.4 10.2 27 20-47 460-486 (643)
182 PF01171 ATP_bind_3: PP-loop f 33.0 4.1E+02 0.009 25.8 10.5 95 415-536 1-106 (182)
183 KOG1650 Predicted K+/H+-antipo 32.5 4.1E+02 0.0089 32.6 12.2 101 98-206 313-415 (769)
184 PF06939 DUF1286: Protein of u 32.3 90 0.002 28.0 4.8 58 15-72 53-110 (114)
185 PRK12737 gatY tagatose-bisphos 31.2 1.6E+02 0.0036 31.3 7.5 73 495-574 13-85 (284)
186 PRK06801 hypothetical protein; 30.8 2.2E+02 0.0048 30.3 8.4 115 495-617 13-131 (286)
187 KOG1965 Sodium/hydrogen exchan 30.7 1E+02 0.0022 35.8 6.2 71 278-350 103-180 (575)
188 PF03686 UPF0146: Uncharacteri 30.3 82 0.0018 29.1 4.4 36 503-538 72-107 (127)
189 PRK12933 secD preprotein trans 30.1 8.6E+02 0.019 28.8 13.6 55 158-213 404-458 (604)
190 COG1883 OadB Na+-transporting 29.9 13 0.00028 38.9 -1.0 112 277-396 83-196 (375)
191 PRK12857 fructose-1,6-bisphosp 29.6 1.8E+02 0.0038 31.0 7.5 72 496-574 14-85 (284)
192 PF01507 PAPS_reduct: Phosphoa 29.0 1.1E+02 0.0023 29.3 5.4 32 588-623 1-32 (174)
193 TIGR01858 tag_bisphos_ald clas 28.6 1.9E+02 0.0041 30.7 7.5 73 495-574 11-83 (282)
194 COG3371 Predicted membrane pro 28.1 3.8E+02 0.0083 26.4 8.7 61 53-125 73-133 (181)
195 PRK04148 hypothetical protein; 27.9 67 0.0014 30.1 3.5 33 506-538 82-114 (134)
196 PRK14695 serine/threonine tran 27.8 5.3E+02 0.012 27.9 10.9 37 168-205 179-217 (319)
197 COG0037 MesJ tRNA(Ile)-lysidin 27.0 2.2E+02 0.0047 30.1 7.9 57 587-656 22-78 (298)
198 COG0816 Predicted endonuclease 26.8 1.4E+02 0.003 28.3 5.4 57 514-573 41-97 (141)
199 cd06278 PBP1_LacI_like_2 Ligan 26.5 6.6E+02 0.014 25.2 11.3 48 483-532 13-60 (266)
200 TIGR01520 FruBisAldo_II_A fruc 26.5 2.2E+02 0.0048 31.2 7.6 89 484-575 12-111 (357)
201 COG2035 Predicted membrane pro 26.2 5.2E+02 0.011 27.2 9.8 49 28-78 57-107 (276)
202 TIGR00250 RNAse_H_YqgF RNAse H 26.1 1.5E+02 0.0032 27.6 5.5 60 512-574 34-93 (130)
203 cd01713 PAPS_reductase This do 26.1 1.1E+02 0.0024 28.8 5.0 35 588-623 1-35 (173)
204 PRK10696 tRNA 2-thiocytidine b 25.7 2.1E+02 0.0045 29.8 7.2 38 586-623 29-68 (258)
205 cd01994 Alpha_ANH_like_IV This 25.6 1.2E+02 0.0027 30.2 5.2 21 588-608 1-21 (194)
206 TIGR01859 fruc_bis_ald_ fructo 25.1 3.3E+02 0.0071 28.9 8.6 71 498-574 14-85 (282)
207 PF08659 KR: KR domain; Inter 24.8 3.6E+02 0.0078 26.1 8.4 84 592-693 4-91 (181)
208 cd01992 PP-ATPase N-terminal d 24.7 4E+02 0.0087 25.7 8.7 96 415-537 1-107 (185)
209 PRK08185 hypothetical protein; 24.6 2.2E+02 0.0047 30.4 7.0 113 495-617 8-125 (283)
210 COG0175 CysH 3'-phosphoadenosi 24.3 1.6E+02 0.0035 30.8 6.0 33 588-624 41-73 (261)
211 KOG3180 Electron transfer flav 24.2 1.6E+02 0.0034 29.3 5.3 33 674-706 102-144 (254)
212 PRK14726 bifunctional preprote 24.2 1.1E+03 0.024 29.2 13.8 55 158-213 336-390 (855)
213 cd00946 FBP_aldolase_IIA Class 24.1 3E+02 0.0065 30.1 8.1 79 495-575 11-99 (345)
214 PRK12911 bifunctional preprote 23.6 6.4E+02 0.014 32.7 11.5 53 159-212 874-926 (1403)
215 cd00947 TBP_aldolase_IIB Tagat 23.0 2.5E+02 0.0054 29.8 7.1 73 496-575 9-81 (276)
216 PF05982 DUF897: Domain of unk 22.9 1E+03 0.022 25.9 21.2 90 246-343 181-275 (327)
217 TIGR03869 F420-0_ABCperm propo 22.7 1E+03 0.022 25.9 14.0 58 49-107 47-104 (325)
218 PF02844 GARS_N: Phosphoribosy 22.6 77 0.0017 28.1 2.7 23 512-534 48-70 (100)
219 PRK01821 hypothetical protein; 22.3 6.5E+02 0.014 23.5 11.1 102 225-329 14-120 (133)
220 TIGR00342 thiazole biosynthesi 22.1 1.4E+02 0.003 33.1 5.3 39 582-624 168-206 (371)
221 PRK09195 gatY tagatose-bisphos 21.7 2.9E+02 0.0064 29.4 7.3 73 495-574 13-85 (284)
222 PRK14854 nhaA pH-dependent sod 21.4 5.8E+02 0.013 28.3 9.6 23 271-293 55-77 (383)
223 cd01452 VWA_26S_proteasome_sub 21.3 4.7E+02 0.01 25.9 8.3 38 587-625 108-147 (187)
224 PRK14853 nhaA pH-dependent sod 21.2 1.2E+03 0.026 26.3 13.6 23 271-293 61-83 (423)
225 KOG2575 Glucosyltransferase - 21.1 1.2E+03 0.026 26.2 14.7 146 232-395 198-350 (510)
226 PF00375 SDF: Sodium:dicarboxy 21.0 5.7E+02 0.012 28.4 10.0 109 96-205 183-297 (390)
227 PRK09197 fructose-bisphosphate 21.0 3.4E+02 0.0074 29.7 7.7 88 485-575 7-104 (350)
228 PF02601 Exonuc_VII_L: Exonucl 20.9 1.7E+02 0.0037 31.5 5.6 48 645-693 29-85 (319)
229 PRK12738 kbaY tagatose-bisphos 20.7 3.4E+02 0.0074 28.9 7.6 72 496-574 14-85 (286)
230 cd01985 ETF The electron trans 20.6 5E+02 0.011 25.1 8.4 27 596-623 18-44 (181)
231 PLN03211 ABC transporter G-25; 20.6 1.5E+03 0.033 27.2 14.5 17 277-293 553-569 (659)
232 PF09895 DUF2122: RecB-family 20.4 3.8E+02 0.0083 24.0 6.6 62 516-597 9-70 (106)
233 TIGR00956 3a01205 Pleiotropic 20.3 1E+03 0.022 31.5 13.3 27 277-303 567-593 (1394)
234 PRK02261 methylaspartate mutas 20.1 7.1E+02 0.015 23.2 9.0 111 489-611 21-135 (137)
235 TIGR01521 FruBisAldo_II_B fruc 20.1 3.6E+02 0.0077 29.6 7.7 72 496-574 12-84 (347)
236 COG1154 Dxs Deoxyxylulose-5-ph 20.1 6.3E+02 0.014 29.8 9.9 112 549-682 452-580 (627)
237 COG1570 XseA Exonuclease VII, 20.1 1.6E+02 0.0035 33.1 5.2 49 645-693 150-203 (440)
238 cd01993 Alpha_ANH_like_II This 20.0 6.2E+02 0.013 24.2 9.0 38 415-453 1-38 (185)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=3.5e-148 Score=1316.26 Aligned_cols=722 Identities=54% Similarity=0.938 Sum_probs=657.5
Q ss_pred CCCCCCcCCCCCcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccC
Q 004372 7 ACPAPMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFP 86 (758)
Q Consensus 7 ~c~~~~~~~~~g~~~~~~p~~~~l~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp 86 (758)
+|+.+.+.+|+|+|+|+||++|++|++++|+++++++++++++++||+|||+++|||++|+++||+++|++..+.+.+||
T Consensus 18 ~c~~~~~~~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred ccccCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 59865578999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Q 004372 87 PKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA 166 (758)
Q Consensus 87 ~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ 166 (758)
.++.+.+++++++|++|+||++|+|+|++.+||++|+++.+|+.++++|+++|+.+++++.. ...........++++++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~-~~~~~~~~~~~l~~g~a 176 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQ-VSRNVHQGTFILFLGVA 176 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchhHHHHHHHHH
Confidence 98888999999999999999999999999999999999999999999999999988887743 22122223567899999
Q ss_pred HhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 004372 167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS----------------------------- 217 (758)
Q Consensus 167 ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~----------------------------- 217 (758)
+|+||+|+++++|+|+|+++|+.||+++++++++|+++|++++++.++...
T Consensus 177 lS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~ 256 (832)
T PLN03159 177 LSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGI 256 (832)
T ss_pred HHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988876554211
Q ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004372 218 ---------GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSS 288 (758)
Q Consensus 218 ---------~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~ 288 (758)
+++.++.++.++++++++++++++.+|+|+++|||++|+++|+ +|+++++++|++++++++|+|+||+++
T Consensus 257 ~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPlFFv~v 335 (832)
T PLN03159 257 WWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPLFFAIS 335 (832)
T ss_pred HHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456788899999999999999999999999999999999995 789999999999999999999999999
Q ss_pred cccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHH
Q 004372 289 GLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFA 368 (758)
Q Consensus 289 G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~ 368 (758)
|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||++++++++++++.|+++++.|+
T Consensus 336 Gl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~ 415 (832)
T PLN03159 336 GLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFA 415 (832)
T ss_pred hheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhh
Confidence 99999988875445666677778889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcchhhhhhhccccccccccCCCCCceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEE
Q 004372 369 IMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVY 448 (758)
Q Consensus 369 ~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~ 448 (758)
+++++++++|.+++|++.++|+|++|+. .|++|++|+.++++|+|||+|+|++++++++++|+++++++ +++|+++|
T Consensus 416 ~lVl~avl~T~i~~Plv~~ly~p~rk~~--~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t-~~sp~~vy 492 (832)
T PLN03159 416 VMVLVAVAMTALITPVVTVVYRPARRLV--GYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPT-KRSPICIY 492 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhc--cccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCC-CCCCceEE
Confidence 9999999999999999999999999999 99999999999999999999999999999999999999999 89999999
Q ss_pred EEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc-cceEEEEeEEecCCCchHHHHHHHHHhcCc
Q 004372 449 ALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRA 527 (758)
Q Consensus 449 ~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~a 527 (758)
++||+|+++|++|.++.|+.+++..+..++ ...++|+++++|+.|+++ ++++++++|++|||++||+|||++|+|+++
T Consensus 493 ~lhLveL~~r~~~~l~~h~~~~~~~~~~~~-~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~ 571 (832)
T PLN03159 493 VLHLVELTGRASAMLIVHNTRKSGRPALNR-TQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRV 571 (832)
T ss_pred EEEEEeecCCCccceeeeeccccccccccc-ccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCC
Confidence 999999999999999999875443321111 124589999999999976 589999999999999999999999999999
Q ss_pred cEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHH
Q 004372 528 AIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGA 607 (758)
Q Consensus 528 dlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~ 607 (758)
|+||+||||+|+.||++++.+..+|.+|++||++||||||||||||.++..+....+..+||+++|+|||||||||+||+
T Consensus 572 slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~ 651 (832)
T PLN03159 572 SLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAW 651 (832)
T ss_pred CEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999997644333444567899999999999999999999
Q ss_pred HHhhCCCeEEEEEEEeecccccCcc--------------cccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEecChHH
Q 004372 608 RMAEHPGISFIVIRFLLAADAIGNT--------------VSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAE 673 (758)
Q Consensus 608 rma~~~~v~ltvvr~~~~~~~~~~~--------------~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~~~~e 673 (758)
|||+||++++||+||++.+....+. ....++.|+++||++++|||.++..+++|.|+||+|+|++|
T Consensus 652 rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e 731 (832)
T PLN03159 652 RMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEE 731 (832)
T ss_pred HHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHH
Confidence 9999999999999999754322100 01114568899999999999999888999999999999999
Q ss_pred HHHHHHhccC-CCEEEEccCC--CchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEeeec
Q 004372 674 TIAVIREVSR-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYS 734 (758)
Q Consensus 674 ~~~~i~~~~~-~DL~iVGr~~--~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq~~ 734 (758)
|++++|+|++ |||+||||+| +|++|+||+||+||||||+|||+|||+||.+ +||||||||+
T Consensus 732 ~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~ 796 (832)
T PLN03159 732 TVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAATVSVLVVQQYV 796 (832)
T ss_pred HHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCCceeEEEEEeec
Confidence 9999999998 9999999998 5999999999999999999999999999999 9999999998
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-120 Score=1061.44 Aligned_cols=715 Identities=51% Similarity=0.814 Sum_probs=648.9
Q ss_pred CCcCCCCCcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcH
Q 004372 11 PMKPTSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ 90 (758)
Q Consensus 11 ~~~~~~~g~~~~~~p~~~~l~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~ 90 (758)
+++.++.|.|+|+||++|++|++++|+++++++++++++++||+|||++++++++||++||+.+|++..+.+.+||.++.
T Consensus 2 ~~~~~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~ 81 (769)
T KOG1650|consen 2 WVKATSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSM 81 (769)
T ss_pred CCccccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-Cc---hhHHHHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKG-VD---STSFLVFMGVA 166 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~-~~---~~~~~l~l~~~ 166 (758)
..+++++.+|+.+++|+.|+|+|.+.++|++|++..+|+.++++|++.|..+...+....... +. ...+..++..+
T Consensus 82 ~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (769)
T KOG1650|consen 82 IVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSA 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988887775433211 11 11257788899
Q ss_pred HhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------
Q 004372 167 LSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS----------------------------- 217 (758)
Q Consensus 167 ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~----------------------------- 217 (758)
+|.|+||+++++|.|+|++++++||+++++++++|+.+|.++++..+....
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 999999999999999999999999999999999999999887776665431
Q ss_pred ----------CCCCchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHH
Q 004372 218 ----------GEPVEETYVCATLAAVLAAGFITDAIG-IHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV 286 (758)
Q Consensus 218 ----------~~~~~e~~~~~~l~~~l~~~~la~~~g-~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~ 286 (758)
+++.++.+...++..++.++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+
T Consensus 242 ~~wi~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~ 321 (769)
T KOG1650|consen 242 MKWIIKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFA 321 (769)
T ss_pred HHHHhhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred HhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhh
Q 004372 287 SSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 366 (758)
Q Consensus 287 ~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~ 366 (758)
.+|+++|+..+.. |......+...+++|++++..+++++|+|++|++.+|++||+||.++++.++.+.+.++++++.
T Consensus 322 ~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 322 ISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEG 398 (769)
T ss_pred hhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccch
Confidence 9999999998874 7777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcchhhhhhhccccccccccCCCCCceEEEEEeecCCChhhHHHHHHHhccCCCCCCce
Q 004372 367 FAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLEALRGIQKSEGLC 446 (758)
Q Consensus 367 ~~~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~ 446 (758)
|++++++++++|.+++|++..+|+|.+++. .|++|++|+.+++.++|++.|+|+++++++++++++++.++ +++|+.
T Consensus 399 f~~~vl~alv~t~I~~~~l~~~y~p~~~~~--~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~-~~~p~~ 475 (769)
T KOG1650|consen 399 FTVMVLMALVSTFITPPLLMFLYDPTRKYH--GYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGS-LESPLS 475 (769)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcchhhhcC--ceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCC-CCCCcc
Confidence 999999999999999999999999999999 89999999999999999999999999999999999999988 666999
Q ss_pred EEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHhhhc--cceEEEEeEEecCCCchHHHHHHHHHh
Q 004372 447 VYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAFQQL--SRVSVRPMTAISSMSDMHEDICTTAES 524 (758)
Q Consensus 447 v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--~~v~v~~~~~vs~~~~m~~dI~~~A~e 524 (758)
++++|++|+.+|+.|++++|+.++++... .+...++++..+|+.|++. .++.++++|+++|+++||+|||.+|.+
T Consensus 476 v~~lhlveL~~~~~~~li~h~~~~~~~~~---~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~ 552 (769)
T KOG1650|consen 476 VYALHLVELVGRATPLLISHKLRKNGRVE---SRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALD 552 (769)
T ss_pred eeeeeeeecccccchhhhhhhhccccccc---cccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHh
Confidence 99999999999999999999876663211 1124567999999999984 679999999999999999999999999
Q ss_pred cCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHH
Q 004372 525 KRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALA 604 (758)
Q Consensus 525 ~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~ 604 (758)
+++++|++||||+|+.++.+++.+..+|++|++|+++||||||||||||.............++|+++|+||+||||||+
T Consensus 553 ~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa 632 (769)
T KOG1650|consen 553 KGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALA 632 (769)
T ss_pred hCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHH
Confidence 99999999999999966689999999999999999999999999999982211111223367899999999999999999
Q ss_pred HHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHH-HhhcCCCCceEEE-EEEecChHHHHHHHHhcc
Q 004372 605 CGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF-KLKTSRNGSVRYE-ERLVRNTAETIAVIREVS 682 (758)
Q Consensus 605 ~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~-~~~~~~~~~v~y~-e~~v~~~~e~~~~i~~~~ 682 (758)
+++||++||++++||+||.++++... .....++++.+|++..+++ +..+..+.++.|. ||.|.|+.||.+++|+++
T Consensus 633 ~~~rm~~~~~v~lTVirf~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~ 710 (769)
T KOG1650|consen 633 LAKRMAENPRVTLTVIRFFPDESKYN--RKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSIT 710 (769)
T ss_pred HHHHHhhCCceEEEEEEeeccchhhc--ccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhc
Confidence 99999999999999999998665330 0011478889999999998 6566566778888 699999999999999999
Q ss_pred C-CCEEEEccCC--CchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEeeeccc
Q 004372 683 R-CNLLLVGRMP--DGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDR 736 (758)
Q Consensus 683 ~-~DL~iVGr~~--~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq~~~~ 736 (758)
+ |||++|||++ +++.++|++||+||||||+|||.|+|+||.+ +||||+|||...
T Consensus 711 ~~ydL~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~~ 768 (769)
T KOG1650|consen 711 EDYDLFIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDFSSKVSVLVVQQQLYS 768 (769)
T ss_pred cccceEEEecccccccchhcCchhcccCccccccCccccccccCccceEEEEEeeecC
Confidence 9 9999999999 8999999999999999999999999999988 999999999754
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=3e-44 Score=417.28 Aligned_cols=377 Identities=20% Similarity=0.323 Sum_probs=312.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 004372 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (758)
Q Consensus 32 ~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (758)
.+++++.+++.++.++..++||+|+|+++|||++|+++||+++|.+. ..+.++.++++|++++||.+|+|
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLE 74 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLE 74 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999999999999754 34568899999999999999999
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHH
Q 004372 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (758)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~ 191 (758)
+|++.+|+.+|+++.+|..++++|+++++.++++++. +| ..++++|.+++.||++++.++|+|+|+++|+.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~----~~---~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~ 147 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGL----RW---QVALLIGLGLALSSTAIAMQAMNERNLMVTQMGR 147 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CH---HHHHHHHHHHHHHHHHHHHHHHHHhccccCchHH
Confidence 9999999999999999999999999888776665542 22 5688899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-----C----------------------------------CCCCchHHHHHHHHH
Q 004372 192 MAMSAAAVNDVAAWILLALAVALSG-----S----------------------------------GEPVEETYVCATLAA 232 (758)
Q Consensus 192 lals~a~i~D~~~~~ll~~~~~~~~-----~----------------------------------~~~~~e~~~~~~l~~ 232 (758)
.+++.++++|+.+|++++++..+.. . +.+.+|.+...++++
T Consensus 148 ~~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~e~~~~~~l~l 227 (621)
T PRK03562 148 SAFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARSGLREVFTAVALFL 227 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 9999999999999988776533211 0 345678888888999
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHH
Q 004372 233 VLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILT 312 (758)
Q Consensus 233 ~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~ 312 (758)
+++++++++.+|+|+.+|||++|++++ +.++++++.++++++. ++|+|+||+++||++|+..+.. .|+.++.++++
T Consensus 228 v~~~a~la~~~Gls~~lGAFlAGl~l~-~~~~~~~le~~i~pf~-~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~ 303 (621)
T PRK03562 228 VFGFGLLMEEVGLSMALGAFLAGVLLA-SSEYRHALESDIEPFK-GLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLG 303 (621)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhc-CCccHHHHHHHHHHHH-HHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHH
Confidence 999999999999999999999999999 4889999999999995 9999999999999999988764 33334555667
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHcchh
Q 004372 313 ACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPA 392 (758)
Q Consensus 313 ~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~ 392 (758)
.+++|++++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++ +.|++.+|++..+|++.
T Consensus 304 ~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v-~lS~~~tP~l~~~~~~~ 382 (621)
T PRK03562 304 FLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAV-ALSMAATPLLLVLLDRL 382 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHHHHHHhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999998755 55677777777776553
Q ss_pred hhhhhccccccccccCCCCCceEEEEEeecCCChhhHHHHHH
Q 004372 393 RRARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLE 434 (758)
Q Consensus 393 ~~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~La~ 434 (758)
.... ..+.+. +...++.+.++++|-++.- ...+.+.++
T Consensus 383 ~~~~--~~~~~~-~~~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (621)
T PRK03562 383 EQSR--TEEARE-ADEIDEQQPRVIIAGFGRF-GQIVGRLLL 420 (621)
T ss_pred HHHH--hhhccc-ccccccccCcEEEEecChH-HHHHHHHHH
Confidence 2111 001111 1111123468888877654 344444444
No 4
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2.4e-43 Score=409.11 Aligned_cols=378 Identities=21% Similarity=0.344 Sum_probs=310.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 004372 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (758)
Q Consensus 32 ~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (758)
-++.++.+++.++.+...++||+|+|.++||+++|+++||+++|.+. ..+.+..++++|++++||.+|+|
T Consensus 5 ~~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLe 74 (601)
T PRK03659 5 DLLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLE 74 (601)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778889999999999999999999999999999999999999754 23457899999999999999999
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHH
Q 004372 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (758)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~ 191 (758)
+|++.+|+.+|+++.+|..++++|+++++.+.++++. + +..++++|++++.||++++.++|+|+|+++++.||
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~----~---~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~ 147 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDF----S---WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQ 147 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----C---HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 9999999999999999999999998777665544321 2 25678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC------------------------------------CCCCchHHHHHHHHHHHH
Q 004372 192 MAMSAAAVNDVAAWILLALAVALSGS------------------------------------GEPVEETYVCATLAAVLA 235 (758)
Q Consensus 192 lals~a~i~D~~~~~ll~~~~~~~~~------------------------------------~~~~~e~~~~~~l~~~l~ 235 (758)
++++..+++|+.+|++++++..+... +.+.+|.++..+++++++
T Consensus 148 ~~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~vl~ 227 (601)
T PRK03659 148 LGFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAASGVREVFTAAALLLVLG 227 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 99999999999998887765332110 445678888999999999
Q ss_pred HHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHH
Q 004372 236 AGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACL 315 (758)
Q Consensus 236 ~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~ 315 (758)
++++++.+|+|+++|||++|+++++ .++++++.++++++. ++|+|+||+++||++|+..+.. .|...+.++++.++
T Consensus 228 ~a~l~~~~Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf~-~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~ 303 (601)
T PRK03659 228 SALFMDALGLSMALGTFIAGVLLAE-SEYRHELEIAIEPFK-GLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVA 303 (601)
T ss_pred HHHHHHHhCccHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-HHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHH
Confidence 9999999999999999999999995 789999999999995 9999999999999999988764 34455566677889
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHcch--hh
Q 004372 316 GKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKP--AR 393 (758)
Q Consensus 316 ~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~--~~ 393 (758)
+|++++++.++++|+++++++.+|+.|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+|++..+++| .+
T Consensus 304 ~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~~~~~ 382 (601)
T PRK03659 304 VKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDKWLAR 382 (601)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999666555 55778888877766 33
Q ss_pred hhhhccccccccccCCCCCceEEEEEeecCCChhhHHHHHH
Q 004372 394 RARVADYKHRTVERKNSKAQFRILACFHSARNIPSTINLLE 434 (758)
Q Consensus 394 ~~~~~~~~~r~i~~~~~~~elriLv~v~~~~~~~~li~La~ 434 (758)
++.. ..+.+..+ ...+.+.++++|-++.- ...+.+.++
T Consensus 383 ~~~~-~~~~~~~~-~~~~~~~~vII~G~Gr~-G~~va~~L~ 420 (601)
T PRK03659 383 RLNG-PEEEDEKP-WVEDDKPQVIIVGFGRF-GQVIGRLLM 420 (601)
T ss_pred hhcc-cccccccc-ccccccCCEEEecCchH-HHHHHHHHH
Confidence 3320 00111111 11123467888776554 334444443
No 5
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=5.6e-43 Score=405.34 Aligned_cols=337 Identities=23% Similarity=0.317 Sum_probs=286.5
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 004372 34 ILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 113 (758)
Q Consensus 34 l~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d 113 (758)
+..+.++++++.+++.++||+|+|.+++||++|+++||+++|... ..+.++.++++|++++||.+|+|+|
T Consensus 8 ~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~d 77 (558)
T PRK10669 8 ITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHFS 77 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcCC
Confidence 456688889999999999999999999999999999999998743 2357889999999999999999999
Q ss_pred chhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHH
Q 004372 114 PKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMA 193 (758)
Q Consensus 114 ~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~la 193 (758)
++.+|+.++..+..+..++++|+++++++++.++. + +..++.+|+++|.||++++.++|+|+|+++++.||++
T Consensus 78 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~ 150 (558)
T PRK10669 78 LKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGW----S---LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIA 150 (558)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCC----C---HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHH
Confidence 99999998877777888888888888776665532 1 2567889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------------C------------------------CCCCchHHHHH
Q 004372 194 MSAAAVNDVAAWILLALAVALSG---------------------S------------------------GEPVEETYVCA 228 (758)
Q Consensus 194 ls~a~i~D~~~~~ll~~~~~~~~---------------------~------------------------~~~~~e~~~~~ 228 (758)
+++++++|+.+|++++++..+.. . +...+|.+...
T Consensus 151 l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~l~ 230 (558)
T PRK10669 151 IGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATGSRELFTLS 230 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 99999999998877765422110 0 23356777777
Q ss_pred HHHHHHHHHHH-HHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHH
Q 004372 229 TLAAVLAAGFI-TDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 307 (758)
Q Consensus 229 ~l~~~l~~~~l-a~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~ 307 (758)
+++.++++++. ++.+|+|+++|||++|+++|+ .+.++++.+...++ .++|+|+||+++|+++|+..+.. .+....
T Consensus 231 ~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~~ 306 (558)
T PRK10669 231 VLALALGIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAVL 306 (558)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHHH
Confidence 78888877764 699999999999999999994 77888888887777 58999999999999999987763 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 004372 308 LVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 387 (758)
Q Consensus 308 ~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~ 387 (758)
.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++++|++.++
T Consensus 307 ~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~ 386 (558)
T PRK10669 307 ATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTL 386 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999999999988888877777767666
Q ss_pred Hcch
Q 004372 388 VYKP 391 (758)
Q Consensus 388 l~~~ 391 (758)
..+.
T Consensus 387 ~~~~ 390 (558)
T PRK10669 387 LERY 390 (558)
T ss_pred hhHH
Confidence 5443
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=375.28 Aligned_cols=341 Identities=29% Similarity=0.560 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 004372 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (758)
Q Consensus 32 ~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (758)
..+.|+.++++++.+.+.++||+|+|.++||+++|+++||.+++. ..++.+.++.++++|++++||.+|+|
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~---------~~~~~~~i~~laelGvi~LlF~~GLE 76 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLL---------IIESSEIIELLAELGVVFLLFLIGLE 76 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccc---------cCCchHHHHHHHHHhHHHHHHHHHHC
Confidence 578899999999999999999999999999999999999955443 23567889999999999999999999
Q ss_pred cCchhHHhccch-hHHHHHHHHHHHHHHHHHHHHH-HHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChh
Q 004372 112 LDPKSLRQTGKK-ALGIAIAGISLPFALGIGSSFL-LRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (758)
Q Consensus 112 ~d~~~l~~~~~~-~~~i~~~~~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~ 189 (758)
+|++.+||++|+ ....+..++.+|+.++....+. ++. ++ ..++++|.+++.||+++++++++|+|.++++.
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~----~~---~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~ 149 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGL----SL---IAALFLGAALALSSTAIVLKILMELGLLKTRE 149 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhcc----Ch---HHHHHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 999999999999 8888888888888877544433 222 22 56899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------------------------------CCCCchHHHHHHHH
Q 004372 190 GRMAMSAAAVNDVAAWILLALAVALSGS--------------------------------------GEPVEETYVCATLA 231 (758)
Q Consensus 190 g~lals~a~i~D~~~~~ll~~~~~~~~~--------------------------------------~~~~~e~~~~~~l~ 231 (758)
|++++++++++|+.++++++++..+... +.+.+|..+..++.
T Consensus 150 g~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~ 229 (397)
T COG0475 150 GQLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLL 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999999999999988776531 34678889999999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChh-HHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHH
Q 004372 232 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 310 (758)
Q Consensus 232 ~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~-~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii 310 (758)
.++++++++|.+|+|+++|||++|+++++ .+.+ +++++|++++.+++|+|+||+.+|+++|+..+... +.....++
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~--~~~~l~~~ 306 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN--LLLILLLV 306 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc--HHHHHHHH
Confidence 99999999999999999999999999995 5556 79999999999779999999999999999998853 44466777
Q ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 004372 311 LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 390 (758)
Q Consensus 311 ~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~ 390 (758)
.+..++|++++++.++.+|.+.++++..|+.+.++|+++++.++.+.. +.++++.++..+..++++|.+.+++.+.+++
T Consensus 307 ~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~ 385 (397)
T COG0475 307 ALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLK 385 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999999998876 5788888888877777777766666666655
Q ss_pred hh
Q 004372 391 PA 392 (758)
Q Consensus 391 ~~ 392 (758)
..
T Consensus 386 ~~ 387 (397)
T COG0475 386 RL 387 (397)
T ss_pred Hh
Confidence 43
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=3.1e-36 Score=348.80 Aligned_cols=345 Identities=19% Similarity=0.199 Sum_probs=287.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhh
Q 004372 31 PLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (758)
Q Consensus 31 ~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gl 110 (758)
-.++++++++++++.+++.+++|+|+|.+++++++|+++||+++|.+. .++.+..+.++++|+++++|..|+
T Consensus 5 ~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~--------~~~~~~~~~i~~l~L~~iLF~~Gl 76 (562)
T PRK05326 5 NSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ--------FDNYPLAYLVGNLALAVILFDGGL 76 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc--------cCcHHHHHHHHHHHHHHHHHcCcc
Confidence 467889999999999999999999999999999999999999998643 134567899999999999999999
Q ss_pred ccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccc-cCChh
Q 004372 111 ELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKL-LTADV 189 (758)
Q Consensus 111 e~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkl-l~s~~ 189 (758)
|+|++.+|+++++++.+++.++++|++++...++++.. .+ +..++++|+++++||++++.++++|+|+ +++++
T Consensus 77 ~~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g---~~---~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 77 RTRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLG---LD---WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERV 150 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC---HHHHHHHhhhhccCchHHHHHHHhccCCCcchhH
Confidence 99999999999999999999999998775444433321 12 3678999999999999999999999996 79999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------------------------C--CCCchHHHHHHHH
Q 004372 190 GRMAMSAAAVNDVAAWILLALAVALSGS------------------------------------G--EPVEETYVCATLA 231 (758)
Q Consensus 190 g~lals~a~i~D~~~~~ll~~~~~~~~~------------------------------------~--~~~~e~~~~~~l~ 231 (758)
++++.+++++||.++++++.++..+... + ...++.+..++++
T Consensus 151 ~~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~ 230 (562)
T PRK05326 151 ASTLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLA 230 (562)
T ss_pred HhHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 9999999999999999877665543210 1 1135567888899
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHH
Q 004372 232 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVIL 311 (758)
Q Consensus 232 ~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~ 311 (758)
++++++++++.+|.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|+..+.+ ..+..+++.++
T Consensus 231 ~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~-~~~~~l~i~~~ 309 (562)
T PRK05326 231 GALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLD-IALPALLLALF 309 (562)
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999998665555556677776678999999999999999987763 23333334445
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-hhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 004372 312 TACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLN-DQVFAIMILMAVVTTFMTTPLVMAVYK 390 (758)
Q Consensus 312 ~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~-~~~~~~lv~~~lv~t~i~~plv~~l~~ 390 (758)
+.+++|++++++.++.+++++||+..+|| .++||.++++++..+...++.+ +..|+++.+++++++.+.++.+..+.+
T Consensus 310 l~~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~ 388 (562)
T PRK05326 310 LILVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR 388 (562)
T ss_pred HHHHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence 67889999999999999999999999999 4899999999999999888886 456777777777777777777766554
Q ss_pred h
Q 004372 391 P 391 (758)
Q Consensus 391 ~ 391 (758)
+
T Consensus 389 ~ 389 (562)
T PRK05326 389 K 389 (562)
T ss_pred H
Confidence 3
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=8.6e-37 Score=338.70 Aligned_cols=336 Identities=33% Similarity=0.592 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHh
Q 004372 40 VILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ 119 (758)
Q Consensus 40 il~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~ 119 (758)
+++.+.+.+.++||+++|.+++|+++|+++||.+++..+ |. ...++.++++|+.+++|.+|+|+|.+.+||
T Consensus 4 li~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~-------~~--~~~~~~l~~i~l~~llF~~G~~~d~~~l~~ 74 (380)
T PF00999_consen 4 LILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLE-------PD--NPSFELLAEIGLAFLLFEAGLELDIKELRR 74 (380)
T ss_dssp -----------------------------------------------------S-SSHHHHS--SSHHHHTTGGGG----
T ss_pred EeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhcc-------ch--hhHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 444556666689999999999999999999999888533 11 366889999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHH
Q 004372 120 TGKKALGIAIAGISLPFAL-GIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAA 198 (758)
Q Consensus 120 ~~~~~~~i~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~ 198 (758)
++|+++.+++.++++|++. ++.+.+++. .. +++ +..++++|.+++.||++++.++++|.+..+++.+++++++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~ 150 (380)
T PF00999_consen 75 NWRRALALGLVGFLLPFILVGFLLSFFLF-IL--GLS-WAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESV 150 (380)
T ss_dssp -------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTT
T ss_pred ccccccccccceeeehhhHHHHHHHHhhc-cc--hhh-hHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhch
Confidence 9999999999999999888 666654321 11 221 257899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc-C----------------------------------CC--CCchHHHHHHHHHHHHHHHHHH
Q 004372 199 VNDVAAWILLALAVALSG-S----------------------------------GE--PVEETYVCATLAAVLAAGFITD 241 (758)
Q Consensus 199 i~D~~~~~ll~~~~~~~~-~----------------------------------~~--~~~e~~~~~~l~~~l~~~~la~ 241 (758)
+||+++++++.+...... + ++ +.++.+..++++.++.+++++|
T Consensus 151 i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~ 230 (380)
T PF00999_consen 151 INDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAE 230 (380)
T ss_dssp TTTTTTTTTT----------------------------------------------------------------------
T ss_pred hhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhccccc
Confidence 999999988877665541 0 22 5678889999999999999999
Q ss_pred HhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhc-hhhhHHHHHHHHHHHHHHHHHH
Q 004372 242 AIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQ-GLQSWGLLALVILTACLGKIVG 320 (758)
Q Consensus 242 ~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~K~~~ 320 (758)
.+|.|+++|+|++|++++ +.+.++++.++++++.++++.|+||+++|+++|++.+. +...|.....+.+..+++|+++
T Consensus 231 ~~g~s~~l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~ 309 (380)
T PF00999_consen 231 ILGLSGILGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIG 309 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhce
Confidence 999999999999999999 67788889999999988999999999999999988874 2245555666667777999999
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHc
Q 004372 321 TFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 389 (758)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~ 389 (758)
+++.+++.|.++||+..+|+.+++||+++++++..+.+.|.++++.+++++.++++++.+.++.++.+.
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 310 VYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp -------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred eehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998888887777777776554
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.1e-31 Score=283.90 Aligned_cols=233 Identities=29% Similarity=0.520 Sum_probs=205.1
Q ss_pred HHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhcc
Q 004372 42 LLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTG 121 (758)
Q Consensus 42 ~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~ 121 (758)
+++.+++.++||+|+|.+++++++|+++||+.+|.++ ..+.++.++++|+++++|.+|+|+|++.+||++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~ 71 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLR 71 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4567889999999999999999999999999988654 335799999999999999999999999999999
Q ss_pred chhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 004372 122 KKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVN 200 (758)
Q Consensus 122 ~~~~~i~~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~ 200 (758)
|+++.+++.++++| +++++.+.+++.. + +..++++|++++.||++++.++++|+|+.+++.|+++++++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~ 144 (273)
T TIGR00932 72 KAAFGVGVLQVLVPGVLLGLLLGHLLGL----A---LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ 144 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC----C---HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHH
Confidence 99999999999999 6677655555432 2 25789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcC--------------------------------------CCCCchHHHHHHHHHHHHHHHHHHH
Q 004372 201 DVAAWILLALAVALSGS--------------------------------------GEPVEETYVCATLAAVLAAGFITDA 242 (758)
Q Consensus 201 D~~~~~ll~~~~~~~~~--------------------------------------~~~~~e~~~~~~l~~~l~~~~la~~ 242 (758)
|+++|+++.+....... ..+.+|.+...++.+++.++++++.
T Consensus 145 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~la~~ 224 (273)
T TIGR00932 145 DIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFGSAYFADL 224 (273)
T ss_pred HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999988777654320 2224577888889999999999999
Q ss_pred hchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhccccc
Q 004372 243 IGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTN 293 (758)
Q Consensus 243 ~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~d 293 (758)
+|.|+++|||++|+++++ .+.++++.++++++. ++|+|+||+++|+++|
T Consensus 225 ~g~s~~lgaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 225 LGLSMALGAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred hCCcHHHHHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 999999999999999996 556888999999998 9999999999999986
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.1e-30 Score=257.75 Aligned_cols=343 Identities=29% Similarity=0.414 Sum_probs=274.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHH
Q 004372 28 FALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (758)
Q Consensus 28 ~~l~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~ 107 (758)
++.|+ +-.+..-+.++.+++.+..|+|+|+.+||++||+++||..-|... +.....-++++|.+++||-
T Consensus 3 h~tpl-i~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFva----------d~~La~~LAelGViLLmFg 71 (408)
T COG4651 3 HDTPL-ITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVA----------DQTLAPELAELGVILLMFG 71 (408)
T ss_pred CCchH-HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCccc----------chhHHHHHHHhhHHHHHHh
Confidence 33444 344455567788999999999999999999999999998777543 3445568999999999999
Q ss_pred HhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCC
Q 004372 108 VGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTA 187 (758)
Q Consensus 108 ~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s 187 (758)
+|++.+++++...+.-++--++.++.+-...+..+.+.++ |+. ...+.+|.++|..|+.+..|.|.|+++.++
T Consensus 72 vGLhfslkdLLavk~iAipgAl~qia~at~lg~gL~~~lg------ws~-~~glvfGlaLS~aSTVvllraLqEr~lidt 144 (408)
T COG4651 72 VGLHFSLKDLLAVKAIAIPGALAQIALATLLGMGLSSLLG------WSF-GTGIVFGLALSVASTVVLLRALEERQLIDT 144 (408)
T ss_pred cchheeHHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcC------CCc-ccceeeeehhhhHHHHHHHHHHHHhccccc
Confidence 9999999999866554444444444444445554444443 322 346788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------------------------------CCCCc
Q 004372 188 DVGRMAMSAAAVNDVAAWILLALAVALSGS---------------------------------------------GEPVE 222 (758)
Q Consensus 188 ~~g~lals~a~i~D~~~~~ll~~~~~~~~~---------------------------------------------~~~~~ 222 (758)
+-||++++.-+++|+..++.+.+..+++.. ...++
T Consensus 145 ~rG~iAiGwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tGsr 224 (408)
T COG4651 145 QRGRIAIGWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATGSR 224 (408)
T ss_pred cCceEEEeehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 999999999999999998887776554321 34457
Q ss_pred hHHHHHHHHHHHHHHH-HHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhh
Q 004372 223 ETYVCATLAAVLAAGF-ITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 301 (758)
Q Consensus 223 e~~~~~~l~~~l~~~~-la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~ 301 (758)
|.+.+.++..+++.++ .++.+|.++.+|||++|+++. ++..+++..+..-+.. +.|.-+||+++||..|+..+.+ +
T Consensus 225 Elf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~-eselshraa~~slpLr-daFaVlFFvsVGmlf~P~~l~~-~ 301 (408)
T COG4651 225 ELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLA-ESELSHRAAEDSLPLR-DAFAVLFFVSVGMLFDPMILIQ-Q 301 (408)
T ss_pred HHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhc-chhhhHHHHHhccCHH-HHHHHHHHHHhhhhcCcHHhhc-c
Confidence 8899999999998776 667999999999999999999 7888888888877774 8888999999999999887764 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 004372 302 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 381 (758)
Q Consensus 302 ~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~ 381 (758)
.+. +.....+.+++|-+..+...+.++.|.|.++.++..+.+.|+++++++..+.+.+++++.--. ++++.-+.+++.
T Consensus 302 pl~-vlatllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~-LvlagailsIl~ 379 (408)
T COG4651 302 PLA-VLATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRD-LVLAGAILSILL 379 (408)
T ss_pred hHH-HHHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHH-HHHHHHHHHHHH
Confidence 343 344556678899999999999999999999999999999999999999999999999955444 446666778888
Q ss_pred HHHHHHHcchhh
Q 004372 382 TPLVMAVYKPAR 393 (758)
Q Consensus 382 ~plv~~l~~~~~ 393 (758)
.|+.....++.+
T Consensus 380 nPllf~~~dr~~ 391 (408)
T COG4651 380 NPLLFALLDRYQ 391 (408)
T ss_pred hHHHHHHHHHHh
Confidence 898876655433
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.94 E-value=2.8e-24 Score=245.94 Aligned_cols=333 Identities=15% Similarity=0.141 Sum_probs=239.1
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 004372 38 CLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (758)
Q Consensus 38 ~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 117 (758)
.++++++.....+++|+++|.+++++++|+++||..++.. ++.++ +.+..+++.+++|..|+++|.+.+
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~-------~~~~~----~~~~~~~Lp~lLF~~g~~~~~~~l 72 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPE-------VPLDR----EIVLFLFLPPLLFEAAMNTDLREL 72 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCC-------CCCCH----HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 3445556667889999999999999999999998644321 11111 234558999999999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHH
Q 004372 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAA 197 (758)
Q Consensus 118 ~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a 197 (758)
|++++....+++.++++|++++....+++.. . .+..++++|+++|+|+++++.+++++.| +++++.+++.+++
T Consensus 73 ~~~~~~i~~la~~~vlit~~~v~~~~~~~~~-----l-~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gES 145 (525)
T TIGR00831 73 RENFRPIALIAFLLVVVTTVVVGFSLNWILG-----I-PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGES 145 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c-cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhh
Confidence 9999999999999999998876655554321 1 2367999999999999999999999988 6899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc--C-----------------------------------CCCCchHHHHHHHHHHHHHHHHH
Q 004372 198 AVNDVAAWILLALAVALSG--S-----------------------------------GEPVEETYVCATLAAVLAAGFIT 240 (758)
Q Consensus 198 ~i~D~~~~~ll~~~~~~~~--~-----------------------------------~~~~~e~~~~~~l~~~l~~~~la 240 (758)
++||..+++++.++..+.. + ....+.....+++++++++++++
T Consensus 146 llND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA 225 (525)
T TIGR00831 146 LLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA 225 (525)
T ss_pred hhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999887765442 1 12233456778888999999999
Q ss_pred HHhchhHHHHHHHHHHhcCCCCCh------hHHHHHHHHHHHHHHhHHHHHHHhcccccchhh--ch-h---h---hHHH
Q 004372 241 DAIGIHAMFGAFVVGVLVPKEGPF------ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATI--QG-L---Q---SWGL 305 (758)
Q Consensus 241 ~~~g~~~~lgaf~aGL~l~~~~~~------~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l--~~-~---~---~~~~ 305 (758)
|.+|.|+++++|++|+++++..+. .+.-.+.++.....++.+++|+++|++++.... .. . . .+..
T Consensus 226 e~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~ 305 (525)
T TIGR00831 226 ERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILAL 305 (525)
T ss_pred HHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 999999999999999999974332 122345666777789999999999999863211 10 0 0 0100
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH--Hh-----cCCChHHHHHHHHHHHHHHHHHHHHHHhhcc---C-------Cccchh
Q 004372 306 ---LALVILTACLGKIVGTFVVS--LS-----FKVPLREALALGILMNTKGLVELIVLNIGKD---R-------KVLNDQ 365 (758)
Q Consensus 306 ---~~~ii~~~~~~K~~~~~~~~--~~-----~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~---~-------~~i~~~ 365 (758)
.+++.....+.|++.++... ++ .++++|+.+.++| .+.||.++++++..... . ..+-.-
T Consensus 306 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~ 384 (525)
T TIGR00831 306 FTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFL 384 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHH
Confidence 11222233445655443321 11 2478999999999 79999999988753321 1 122223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHc
Q 004372 366 VFAIMILMAVVTTFMTTPLVMAVY 389 (758)
Q Consensus 366 ~~~~lv~~~lv~t~i~~plv~~l~ 389 (758)
++.+++++.++.....+|+++++-
T Consensus 385 ~~~vVl~TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 385 AAGVILFSLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcC
Confidence 455566666666666677776653
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.93 E-value=9.8e-24 Score=242.06 Aligned_cols=329 Identities=15% Similarity=0.215 Sum_probs=244.2
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHc-ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHH
Q 004372 20 FQGDSPLDFALPLAILQICLVILLTRGLAFILR-PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLAN 98 (758)
Q Consensus 20 ~~~~~p~~~~l~~ll~~~~lil~~~~~~~~ll~-~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~ 98 (758)
|+.-++-+..+ .+..++..+++..++..++| |+.+|..+.++++|+++||.++|...+.- + .......++ +.+
T Consensus 3 w~~l~~~~~~l--~~~~lG~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~-~--g~~d~i~le-Ite 76 (810)
T TIGR00844 3 WEQLEVTKAHV--AYSCVGIFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLS-W--GNTDSITLE-ISR 76 (810)
T ss_pred cccccccchhh--HHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhh-c--ccchHHHHH-HHH
Confidence 54444444333 34444444444445555555 99999999999999999999988654210 0 001233445 999
Q ss_pred HHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHH
Q 004372 99 LGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARI 178 (758)
Q Consensus 99 lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~i 178 (758)
+++.+.+|.+|++++.+.+|+.++..+.+++.++.++++++.++++++...+ + +..++++|+++++|++.....+
T Consensus 77 IvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL--~---~~~ALLLGAILAPTDPVLAssV 151 (810)
T TIGR00844 77 ILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL--N---FPASLLMGACITATDPVLAQSV 151 (810)
T ss_pred HHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C---HHHHHHHHhhhcCCcHHHHHHH
Confidence 9999999999999999999999999999999999999888877777663211 2 3679999999999997666666
Q ss_pred HH---hccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc----C----------------------------------
Q 004372 179 LA---ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG----S---------------------------------- 217 (758)
Q Consensus 179 L~---elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~----~---------------------------------- 217 (758)
++ ..+ ++.++..++.+++.+||.++++++.+.+.+.. +
T Consensus 152 ~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 152 VSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred Hhcccccc-CChHHHhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 234 67899999999999999999877654432221 0
Q ss_pred ----CC--CCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHH-HHHHHHHHHHHHhHHHHHHHhcc
Q 004372 218 ----GE--PVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANA-LVEKVEDLVSGIFLPLYFVSSGL 290 (758)
Q Consensus 218 ----~~--~~~e~~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~-l~~ki~~~~~~~~lPlfF~~~G~ 290 (758)
++ -..+.++.+.++++++++.+++.+|.++++++|++|+++.+......+ -...+......++..++|+++|+
T Consensus 231 ~~l~rr~~i~~esfla~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa 310 (810)
T TIGR00844 231 RFAEGKNIIDRESFLAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGS 310 (810)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11 134566777788888889999999999999999999999975443322 22346666678889999999999
Q ss_pred cccchhhch----hhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 004372 291 KTNIATIQG----LQSWGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIVLNIGKDRKV 361 (758)
Q Consensus 291 ~~dl~~l~~----~~~~~~~~~ii~~~~~~K~~~~~~~~~~~--~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~ 361 (758)
.+....+.. ...|..+++.+++.++.|+.++++...+. ..+++|++++|| .++||..++.++..+.+.+.
T Consensus 311 ~L~~~~l~~~~l~~~~w~~ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 311 ILPWKDFNNGDIGLDVWRLIILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred hhCHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 998766542 13466566666777888988887754443 468999999999 89999999999988876654
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.90 E-value=3.1e-21 Score=214.94 Aligned_cols=343 Identities=19% Similarity=0.231 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 004372 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (758)
Q Consensus 32 ~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (758)
..++++.+++.+..+...+.+|+..|.+..+++.|++.||.+++...+ +....-+.+..+++..++|..|++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~ 77 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLE 77 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhc
Confidence 467888888899999999999999999999999999999988876542 111223344499999999999999
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHH
Q 004372 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (758)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~ 191 (758)
+|.+.+||+++..+.+++.+++++.+......+++.+ ++ .+..++.+|+++|+|++.++..+.++.| .+.++.+
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~----~i-~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~ 151 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP----GI-PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRT 151 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Ch-hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHH
Confidence 9999999999999999999999997766656665532 22 2368999999999999998899888877 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-----------------------------------------CCCCchHHHHHHH
Q 004372 192 MAMSAAAVNDVAAWILLALAVALSGS-----------------------------------------GEPVEETYVCATL 230 (758)
Q Consensus 192 lals~a~i~D~~~~~ll~~~~~~~~~-----------------------------------------~~~~~e~~~~~~l 230 (758)
+..+++++||..+++++.+...+... +.........+.+
T Consensus 152 iL~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L 231 (429)
T COG0025 152 ILEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTL 231 (429)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH
Confidence 99999999999999999887765431 1123566788899
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhcC---C--CCChh-HHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHH
Q 004372 231 AAVLAAGFITDAIGIHAMFGAFVVGVLVP---K--EGPFA-NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 304 (758)
Q Consensus 231 ~~~l~~~~la~~~g~~~~lgaf~aGL~l~---~--~~~~~-~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~ 304 (758)
..++..+.+++.+|.|++++++++|++.. . ..+.. +...+.++.....++.-+.|++.|++++...+.. ..+.
T Consensus 232 ~~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~-~~~~ 310 (429)
T COG0025 232 LLAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLA-LGLL 310 (429)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-hhHH
Confidence 99999999999999999999999998773 1 22222 3444557777778999999999999999877764 2355
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHHHHHHHHHhhccC------CccchhhHHHHHH
Q 004372 305 LLALVILTACLGKIVGTFVVSLSFK------VPLREALALGILMNTKGLVELIVLNIGKDR------KVLNDQVFAIMIL 372 (758)
Q Consensus 305 ~~~~ii~~~~~~K~~~~~~~~~~~~------~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~------~~i~~~~~~~lv~ 372 (758)
..+..++..+++|++++++..+..+ .+++|++.++| -++||.++++++...... ..+-.-.+.+++.
T Consensus 311 ~~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~ 389 (429)
T COG0025 311 GLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILF 389 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHH
Confidence 6677888899999999999988743 79999999999 799999999988754421 1233334555656
Q ss_pred HHHHHHHHHHHHHHHHcc
Q 004372 373 MAVVTTFMTTPLVMAVYK 390 (758)
Q Consensus 373 ~~lv~t~i~~plv~~l~~ 390 (758)
++++.+...+|+.++...
T Consensus 390 Sl~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 390 SLLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHHhhhHHHHHHHhcc
Confidence 666666666677766543
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.87 E-value=5e-20 Score=210.84 Aligned_cols=332 Identities=10% Similarity=0.135 Sum_probs=238.4
Q ss_pred HHHHHccc-CCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhH
Q 004372 47 LAFILRPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKAL 125 (758)
Q Consensus 47 ~~~ll~~l-~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~ 125 (758)
++..-|+. ++|..+..++.|+++|+...+... .+. ..-.-+.+-.+.+..++|..|+++|.+.++++.+..+
T Consensus 25 ~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~------~~~-~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il 97 (559)
T TIGR00840 25 FHLTHKVIRAVPESVLLIVYGLLVGGIIKASPH------IDP-PTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSIL 97 (559)
T ss_pred HHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCC------Ccc-CCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444455 499999999999999985433211 000 0111245566778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh---cCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHH
Q 004372 126 GIAIAGISLPFALGIGSSFLLRETIS---KGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDV 202 (758)
Q Consensus 126 ~i~~~~~~i~~~~~~~~~~~l~~~~~---~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~ 202 (758)
.+++.+++++.++.....+++..... .+. .+..++.+|+++|+|++..+..++++.+ .+.++-+++.+++++||.
T Consensus 98 ~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l-~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDa 175 (559)
T TIGR00840 98 IFAVVGTLINAFVIGLSLYGICLIGGFGSIDI-GLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDA 175 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccCC-CHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhcc
Confidence 99999999996655544444322111 112 2478999999999999999999999999 699999999999999999
Q ss_pred HHHHHHHHHHHHhc---C--------------------------------------CCCCchHHHHHHHHHHHHHHHHHH
Q 004372 203 AAWILLALAVALSG---S--------------------------------------GEPVEETYVCATLAAVLAAGFITD 241 (758)
Q Consensus 203 ~~~~ll~~~~~~~~---~--------------------------------------~~~~~e~~~~~~l~~~l~~~~la~ 241 (758)
.+++++.++..+.. . .+..+.....+++++++++++++|
T Consensus 176 vaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~Y~lAE 255 (559)
T TIGR00840 176 VTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLSYLFAE 255 (559)
T ss_pred HHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 99999876654431 0 112234566777888889999999
Q ss_pred HhchhHHHHHHHHHHhcCC-----CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHH
Q 004372 242 AIGIHAMFGAFVVGVLVPK-----EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLG 316 (758)
Q Consensus 242 ~~g~~~~lgaf~aGL~l~~-----~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~ 316 (758)
.+|.|++++++++|+++.+ ..+..+.-.+.++...+.++..+.|+++|+.+-... . ...|...++.+++.++.
T Consensus 256 ~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~-~~~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 256 TLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-H-EWNWAFVVATLSFCVIY 333 (559)
T ss_pred HhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-h-hHHHHHHHHHHHHHHHH
Confidence 9999999999999999964 222233334556666678889999999999763221 1 12444445555667788
Q ss_pred HHHHHHHHHHh------cCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccch-----hhHHHHHHHHHHHHHHHHHHH
Q 004372 317 KIVGTFVVSLS------FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND-----QVFAIMILMAVVTTFMTTPLV 385 (758)
Q Consensus 317 K~~~~~~~~~~------~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~-----~~~~~lv~~~lv~t~i~~plv 385 (758)
|+++++...+. .+++++|.+.++| .+.||.++++++....+.+.-.. .++.++++++++....++|++
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~ 412 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLV 412 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHH
Confidence 99998876653 3589999999999 78999999998865543322222 234444455566566668888
Q ss_pred HHHcc
Q 004372 386 MAVYK 390 (758)
Q Consensus 386 ~~l~~ 390 (758)
+++.-
T Consensus 413 ~~L~l 417 (559)
T TIGR00840 413 EVLKV 417 (559)
T ss_pred HHhCC
Confidence 87643
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.84 E-value=1.8e-19 Score=189.34 Aligned_cols=317 Identities=19% Similarity=0.184 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 004372 32 LAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (758)
Q Consensus 32 ~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (758)
.+++.-.+++.++.+.+.+..|+|.|..+-++..|++.|--++|.+. .++.+....++++++++++|..|+.
T Consensus 7 ~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~--------fdNy~~Ay~vg~lALaiILfdgG~~ 78 (574)
T COG3263 7 LILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE--------FDNYPFAYMVGNLALAIILFDGGFG 78 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc--------cCccHHHHHHHHHHHHHHhhcCccC
Confidence 34444456777788889999999999999999999999999999765 2456778889999999999999999
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHH
Q 004372 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (758)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~ 191 (758)
.+++.+|...++++.++..|++++-.+....+.++... .|.+.+++|+++.+|+.+.+..+|.+.+ +|.+++.
T Consensus 79 T~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~s 151 (574)
T COG3263 79 TQLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAS 151 (574)
T ss_pred CcHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhh
Confidence 99999999999999999999999966555555554332 2378999999999999999999998888 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-------------------------------------CCCCchHHHHHHHHHHH
Q 004372 192 MAMSAAAVNDVAAWILLALAVALSGS-------------------------------------GEPVEETYVCATLAAVL 234 (758)
Q Consensus 192 lals~a~i~D~~~~~ll~~~~~~~~~-------------------------------------~~~~~e~~~~~~l~~~l 234 (758)
+..-++--||-+++++....+.+... -.-.+..|..++++..+
T Consensus 152 tLEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~L 231 (574)
T COG3263 152 TLEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGL 231 (574)
T ss_pred hEEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 99999999998887665443332211 22335678889999999
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHH
Q 004372 235 AAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTAC 314 (758)
Q Consensus 235 ~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~ 314 (758)
..+.+++.+|.|++++.+++|+.+.|.+-..+.-+-++.+=..++..-+.|...|+...++++.. ...+.+++.+.+.+
T Consensus 232 l~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~-iavPailL~l~mif 310 (574)
T COG3263 232 LIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLP-IAIPAILLSLWMIF 310 (574)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhH-hhHHHHHHHHHHHH
Confidence 99999999999999999999999997654444444444443458888899999999999888875 35555667778889
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchh
Q 004372 315 LGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQ 365 (758)
Q Consensus 315 ~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~ 365 (758)
++|.+++|+...-+|.+++|..+++| .+-||.+.++++....-.|.-+.+
T Consensus 311 vaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~ 360 (574)
T COG3263 311 VARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENAR 360 (574)
T ss_pred HHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccce
Confidence 99999999999999999999999999 789999999999876666554444
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.73 E-value=2e-15 Score=164.13 Aligned_cols=254 Identities=19% Similarity=0.282 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhH-------HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSL-------RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFM 163 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l-------~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l 163 (758)
...+.+.+.-+.+|.|.+|+|+..+.+ ||..- ...-++.|+++|.++-+.+.+ .. . ...-.+
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~l-P~~aAlGGm~vPaliy~~~n~----~~----~--~~~~GW 129 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAAL-PVAAALGGMIVPALIYVAVNL----AG----G--GALRGW 129 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHhHHHHHHHHHHHhC----Cc----h--hhhhhh
Confidence 345667777788899999999954433 33222 245678888888765433221 00 0 111222
Q ss_pred HHHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchH
Q 004372 164 GVALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEET 224 (758)
Q Consensus 164 ~~~ls~Ts~~vv~~iL~elkl-l~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~ 224 (758)
| +-+.|+.+....+|+.+|- .+++++...++.|++||+.+++++++..+-..+ +++.++.
T Consensus 130 ~-Ip~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt~~i~~~~L~~a~~~~~~l~~l~~~~V~~~ 208 (423)
T PRK14853 130 A-IPTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYTSELNLEALLLALVPLALFWLLVQKRVRKW 208 (423)
T ss_pred h-hhhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccCCCCCHHHHHHHHHHHHHHHHHHHcCCchh
Confidence 2 3356788888999999874 588999999999999999999998876531111 5667777
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-----------CChhHHHHHHHHHHHHHHhHHHH-HHHhcccc
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----------GPFANALVEKVEDLVSGIFLPLY-FVSSGLKT 292 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~-----------~~~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~ 292 (758)
+.++++. +.+.+..+..|+|+.+|+|++|+++|.. .+..++++++++++++.+++|+| |+..|.++
T Consensus 209 ~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l 286 (423)
T PRK14853 209 WLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAI 286 (423)
T ss_pred hHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7776653 4667788999999999999999999941 13468899999999999999999 99999999
Q ss_pred cc-hhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 293 NI-ATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 293 dl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
|. ..+.+...-.+...+++..+++|.+|.+..++.. +++|++-..+|++-+..=++++-+.+.+++
T Consensus 287 ~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlFI~~LAf~ 363 (423)
T PRK14853 287 GGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTVSLLIGELAFG 363 (423)
T ss_pred cCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 86 4342111112456777888999999988877652 468899888888665555788888888884
No 17
>PRK11175 universal stress protein UspE; Provisional
Probab=99.70 E-value=2.2e-16 Score=169.89 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=168.0
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.|||+|++.+++...+++.+..++.. ...+++++|+++......+............... .++.++.++.+..
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 76 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQR---NGGKITAFLPIYDFSYEMTTLLSPDEREAMRQGV----ISQRTAWIREQAK 76 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHh---cCCCEEEEEeccCchhhhhcccchhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 37999999999999999999999854 5677899998853221111000000000000000 0011122222221
Q ss_pred hhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCC
Q 004372 494 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 573 (758)
Q Consensus 494 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg 573 (758)
..+..+++++..+... .+++++|++.|+++++||||+|+|++....+. .+|++.+++++++||||.+. ..+
T Consensus 77 ~~~~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~------~~gs~~~~l~~~~~~pvlvv-~~~ 147 (305)
T PRK11175 77 PYLDAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESV------IFTPTDWHLLRKCPCPVLMV-KDQ 147 (305)
T ss_pred HHhhcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhh------ccChhHHHHHhcCCCCEEEe-ccc
Confidence 1123567777765543 58999999999999999999999987544333 37899999999999998654 331
Q ss_pred CCCCcccccCCcceEEEEeccCCcCh-------HHHHHHHHHHhhCC-CeEEEEEEEeecccccCcc--c-ccCCcCccc
Q 004372 574 LGGTTQVSASNVSYTITVLFFGGRDD-------REALACGARMAEHP-GISFIVIRFLLAADAIGNT--V-SVDMAGNAS 642 (758)
Q Consensus 574 ~~~~~~~~~~~~~~~I~v~f~GG~dd-------reAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~--~-~~~~~~~~~ 642 (758)
. ....++|++++.|.+++ +.|+.+|.++|+.. +.+++++++.+........ . ...++.++.
T Consensus 148 ~--------~~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~ 219 (305)
T PRK11175 148 D--------WPEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDA 219 (305)
T ss_pred c--------cCCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHH
Confidence 1 11246999999998653 67999999999987 9999999997532211000 0 000111111
Q ss_pred cHH---HHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhc
Q 004372 643 MDE---EVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTS 719 (758)
Q Consensus 643 ~d~---~~~~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las 719 (758)
..+ +.++++..+.... . .......++..+.+....+..+.||+++|.++ -+|+.+| =+|-..+-++.
T Consensus 220 ~~~~~~~~l~~~~~~~~~~-~-~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~----~~~~~~~----llGS~a~~v~~ 289 (305)
T PRK11175 220 IRGQHLLAMKALRQKFGID-E-EQTHVEEGLPEEVIPDLAEHLDAELVILGTVG----RTGLSAA----FLGNTAEHVID 289 (305)
T ss_pred HHHHHHHHHHHHHHHhCCC-h-hheeeccCCHHHHHHHHHHHhCCCEEEECCCc----cCCCcce----eecchHHHHHh
Confidence 111 3344554443211 1 11111223444333222222239999999987 4455544 47888888886
Q ss_pred CCCCc-eeEEEEe
Q 004372 720 LEFST-ASVLIIQ 731 (758)
Q Consensus 720 ~d~~~-~SvLvvq 731 (758)
.. ++||||.
T Consensus 290 ---~~~~pVLvv~ 299 (305)
T PRK11175 290 ---HLNCDLLAIK 299 (305)
T ss_pred ---cCCCCEEEEc
Confidence 34 7999995
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.4e-15 Score=167.81 Aligned_cols=349 Identities=16% Similarity=0.163 Sum_probs=249.2
Q ss_pred HHHHHHHHHHHHHHHHHHcccC---CChhHHHHHHHHhhcccccCCchhhh-----ccccCCCcHHHHHHHHHHHHHHHH
Q 004372 34 ILQICLVILLTRGLAFILRPLR---QPRVIAEITGGILLGPSALGRSERFL-----QAVFPPKSQTVLDTLANLGLIFFM 105 (758)
Q Consensus 34 l~~~~lil~~~~~~~~ll~~l~---~P~iv~~ilaGiilGP~~lg~~~~~~-----~~~fp~~~~~~l~~l~~lgl~~~l 105 (758)
++-++++++++.+..+++++.| +|.-+.-++-|+++|-.......... ...|.+ +.+-.+-+--+.
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~------~~ff~vLLPpii 110 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSP------DLFFLVLLPPII 110 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecc------cHHHHHhhchhh
Confidence 4445566677778899999988 99999999999999954322111100 011111 123333444588
Q ss_pred HHHhhccCchhHHhccchhHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccc
Q 004372 106 FLVGLELDPKSLRQTGKKALGIAIAGISLP-FALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKL 184 (758)
Q Consensus 106 F~~Gle~d~~~l~~~~~~~~~i~~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkl 184 (758)
|..|.+++.+.++|+......+++.|..+. +++|.++.++.......++. +..++++|+.+|.|++..+..++.|+|
T Consensus 111 f~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~-f~d~L~fGaliSATDPVtvLaIfnel~- 188 (575)
T KOG1965|consen 111 FNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLS-FKDCLAFGALISATDPVTVLAIFNELG- 188 (575)
T ss_pred hcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhccccccccc-HHHHHHHhhHhcccCchHHHHHHHHhC-
Confidence 999999999999999999999999988887 45555555443322233443 378999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------------------------------------CCCCchH
Q 004372 185 LTADVGRMAMSAAAVNDVAAWILLALAVALSGS----------------------------------------GEPVEET 224 (758)
Q Consensus 185 l~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~----------------------------------------~~~~~e~ 224 (758)
....+-.++.+++++||..+++++..+...... -++....
T Consensus 189 vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~l 268 (575)
T KOG1965|consen 189 VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSL 268 (575)
T ss_pred CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 688999999999999999999998876544321 2245667
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-----CChhHHHHHHHHHHHHHHhHHHHHHHhccc-ccchhhc
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----GPFANALVEKVEDLVSGIFLPLYFVSSGLK-TNIATIQ 298 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~-----~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~-~dl~~l~ 298 (758)
+..+.+++....+++||.+|+++++..+..|+.+.+. .+..+.-.+.+....+.+..-+-|+++|+. ++.....
T Consensus 269 E~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~ 348 (575)
T KOG1965|consen 269 ESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHV 348 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccee
Confidence 7888899999999999999999999999999999862 233444455666666778888889999963 3333332
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHHHHHHHHHHhhc-cC-----Ccc
Q 004372 299 GLQSWGLLALVILTACLGKIVGTFVVSLSFK----------VPLREALALGILMNTKGLVELIVLNIGK-DR-----KVL 362 (758)
Q Consensus 299 ~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~----------~~~~~~~~lgl~l~~kG~~~l~~~~~~~-~~-----~~i 362 (758)
. .....+....++.+++|..-.+..+.+.+ +|.++-..++|.-..||.++++++..-. +. ..+
T Consensus 349 ~-~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i 427 (575)
T KOG1965|consen 349 Y-KSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTI 427 (575)
T ss_pred e-echHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEE
Confidence 1 11223455566778888887776666543 4555667778866689999999875322 21 233
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHcch
Q 004372 363 NDQVFAIMILMAVVTTFMTTPLVMAVYKP 391 (758)
Q Consensus 363 ~~~~~~~lv~~~lv~t~i~~plv~~l~~~ 391 (758)
-..+..++++.+++....+.|+++++...
T Consensus 428 ~tttl~vVlfT~lv~Gg~T~pml~~L~~~ 456 (575)
T KOG1965|consen 428 FTTTLVVVLFTVLVFGGSTKPMLSYLMIS 456 (575)
T ss_pred EEeeeeeeeeeeeeeCCccHHHHHHhccc
Confidence 34445555567777778889999988643
No 19
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.53 E-value=8.3e-13 Score=134.93 Aligned_cols=310 Identities=15% Similarity=0.203 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 004372 38 CLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (758)
Q Consensus 38 ~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 117 (758)
+.+.+++..--++-+++-+...+--.+.|+++||+.++...+.. -.+......-++.+-+..-.|.++.|+.-..+
T Consensus 20 ~F~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~----wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~ 95 (467)
T KOG4505|consen 20 GFVSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNS----WGNKDYITYEISRVVLCVQVFAVAMELPRAYM 95 (467)
T ss_pred hHHHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCcc----ccCcchhhhhhhhhhHhHHHHHHHHhccHHHH
Confidence 44455555555666777777777888999999999988754310 01223456677888888899999999999999
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhcc---ccCChhHHHHH
Q 004372 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELK---LLTADVGRMAM 194 (758)
Q Consensus 118 ~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elk---ll~s~~g~lal 194 (758)
.++++....+-..-+++-.++.+...|.+.+. .+ ...++.++...+.|++...+.+..+-+ ..+.++..+..
T Consensus 96 l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~----ln-f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~ 170 (467)
T KOG4505|consen 96 LEHWRSIFVLLLPVMIIGWLVSFGFVYALIPN----LN-FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLA 170 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cc-HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHH
Confidence 99999887766655555555555555555432 22 257889999999999544444444433 35567888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-------------------------------------------CCCCchHHHHHHHH
Q 004372 195 SAAAVNDVAAWILLALAVALSGS-------------------------------------------GEPVEETYVCATLA 231 (758)
Q Consensus 195 s~a~i~D~~~~~ll~~~~~~~~~-------------------------------------------~~~~~e~~~~~~l~ 231 (758)
+++-.||.++++++-+.+-+... +--..|+++.+-++
T Consensus 171 AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vv 250 (467)
T KOG4505|consen 171 AESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVV 250 (467)
T ss_pred HhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999999999888776654321 33457889999999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHH-HHHHHHHHHHhHHHHHHHhcccccchhhchh----hhHHHH
Q 004372 232 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALV-EKVEDLVSGIFLPLYFVSSGLKTNIATIQGL----QSWGLL 306 (758)
Q Consensus 232 ~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~-~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~----~~~~~~ 306 (758)
+++.|+.+.+.+|.+-.+-.|.||.+++.+.-+..+.. .++..+...++.-.||++.|..++.+.++.. ..|-.+
T Consensus 251 l~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlv 330 (467)
T KOG4505|consen 251 LALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLV 330 (467)
T ss_pred HHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHH
Confidence 99999999999999999999999999997666665553 3577777777888899999999998877543 245444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004372 307 ALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVELIVLNIGK 357 (758)
Q Consensus 307 ~~ii~~~~~~K~~~~~~~~~~~--~~~~~~~~~lgl~l~~kG~~~l~~~~~~~ 357 (758)
++-+.+.+.-|+-++++.-.+. =.+|||++++|. .+|.|.-++..+..+.
T Consensus 331 ilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 331 ILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred HHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 3333333333443333322111 148999999999 8999998887776554
No 20
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.48 E-value=2.9e-13 Score=126.37 Aligned_cols=131 Identities=24% Similarity=0.344 Sum_probs=102.8
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 494 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 494 (758)
|||+|++++++...+++.+..+++. .+.+++++|+++.+....+. ... .. .++.++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~---~~~~v~ll~v~~~~~~~~~~---~~~-~~---------~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA---QNGEIIPLNVIEVPNHSSPS---QLE-VN---------VQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc---CCCeEEEEEEEecCCCCCcc---hhH-HH---------HHHHHHHHHHHHHH
Confidence 6999999999999999999999964 67899999999876543321 000 00 12345667777777
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
.++.++++++.+..+ .++.++||+.|++.++|+||||+|+++...+. .+|+++++|++++||||.|+
T Consensus 65 ~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~------~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDR------LFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccce------ecCchHHHHHhcCCCCEEEe
Confidence 666778888888776 58999999999999999999999988755333 38999999999999998764
No 21
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.47 E-value=3.9e-12 Score=136.00 Aligned_cols=254 Identities=20% Similarity=0.287 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCchhHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFM 163 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~l~l 163 (758)
...+.+.+.-+.+|.|.+|+|+..+.+.. +.||+ ..-++.|+++|.++-..+.. ... ...+|.. +.+.=+
T Consensus 51 ~l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW~I-P~ATDi 127 (373)
T TIGR00773 51 SLLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGWAI-PAATDI 127 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcccc-ccHHHH
Confidence 34566777778889999999998776652 33333 45567788888665332221 111 1123322 122222
Q ss_pred HHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372 164 GVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY 225 (758)
Q Consensus 164 ~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~ 225 (758)
+.++. ...+-- +..+..+....++-+++||+.++++.++..+-..+ +.+.++..
T Consensus 128 AFalg-------vlallG-~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~~i~~~~L~~a~~~~~~l~~~~~~~v~~~~ 199 (373)
T TIGR00773 128 AFALG-------VMALLG-KRVPLALKIFLLALAIIDDLGAIVIIALFYTNDLSMAALLVAAVAIAVLAVLNRCGVRRLG 199 (373)
T ss_pred HHHHH-------HHHHhc-CCCCHHHHHHHHHHHHHHHHhhHhheeeecCCCCCHHHHHHHHHHHHHHHHHHHcCCchhh
Confidence 22222 211112 23677888999999999999998887765431111 45566655
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHHHHHhHHHH-HHHhcccccchhhchh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF----ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGL 300 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~----~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~ 300 (758)
.+.++..++..+. ...|+|+.+|+|++|+++|+..+. .+++++.+++.+..+++|+| |+..|.++|...+..
T Consensus 200 ~y~~lgvllW~~~--~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~~- 276 (373)
T TIGR00773 200 PYMLVGVILWFAV--LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLNG- 276 (373)
T ss_pred HHHHHHHHHHHHH--HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcchh-
Confidence 5555444433333 799999999999999999975333 35667777777989999999 999999998655432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 301 QSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 301 ~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
........+++..+++|.+|++..++.. +++|++-.-+|++-+..=++++-+.+.+++
T Consensus 277 ~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 277 LTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2223466788889999999999888752 468899888888655555788888888884
No 22
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.20 E-value=1.2e-10 Score=110.91 Aligned_cols=141 Identities=11% Similarity=0.183 Sum_probs=94.3
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHH--HHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL--MVHKARRNGLPFWNRGRQSNPNHIVVAFE 492 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~--i~~~~~~~~~~~~~~~~~~~~~~i~~af~ 492 (758)
+||+|++++++...+++.+..++.. ...+++++|+++.+....... ........ ... .++.++.++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~---~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~~ 71 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLAT---KGQTIVLVHVHPPITSIPSSSGKLEVASAYK-QEE-----DKEAKELLLPYR 71 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccC---CCCcEEEEEeccCcccCCCCccchHHHHHHH-HHH-----HHHHHHHHHHHH
Confidence 4899999999999999999998754 567889999987532211000 00000000 000 012233444333
Q ss_pred HhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchH-HHHHHHhhcCC--CceEEE
Q 004372 493 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAP--CSVGIL 569 (758)
Q Consensus 493 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~-~vn~~VL~~Ap--CsVgIl 569 (758)
+..+..++.++..+..+ .++.+.|+++|++.++|+||||.|++.+....+ ++ ++.++|+++|| |||-|
T Consensus 72 ~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~------~gssva~~Vi~~a~~~c~Vlv- 142 (146)
T cd01989 72 CFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF------KKSDVASSVLKEAPDFCTVYV- 142 (146)
T ss_pred HHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc------cCCchhHHHHhcCCCCceEEE-
Confidence 33333567777776654 589999999999999999999999986554333 55 69999999999 99854
Q ss_pred ecCC
Q 004372 570 IDRG 573 (758)
Q Consensus 570 vdrg 573 (758)
|.+|
T Consensus 143 v~~~ 146 (146)
T cd01989 143 VSKG 146 (146)
T ss_pred EeCc
Confidence 5554
No 23
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.17 E-value=2.1e-09 Score=116.92 Aligned_cols=252 Identities=20% Similarity=0.289 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (758)
...+.+.+.-+.+|.|.+|+|+.-+.+.. +.|++ ..-++.|+++|.++-+.+.. ......+|.. +.+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~~~~GWgI-PmA---- 139 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTPSQHGFGI-PMA---- 139 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCCccCcccc-ccH----
Confidence 34566777778889999999998776642 22333 45567788888665332221 1111123322 122
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~ 225 (758)
|+.+....++.=+ +..++.+....++-|++||+.++++.++..+-... +...+...
T Consensus 140 -----TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 214 (438)
T PRK14856 140 -----TDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTTNLKFAWLLGALGVVLVLAVLNRLNVRSLI 214 (438)
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCCCCcHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 2222222222222 22577888999999999999998887765431100 44555555
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCh-----------------------------------------
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF----------------------------------------- 264 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~----------------------------------------- 264 (758)
.++++..++ .+....-|+|+.++..++|+++|..++.
T Consensus 215 ~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (438)
T PRK14856 215 PYLLLGVLL--WFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQQEILHSIEEKASAL 292 (438)
T ss_pred HHHHHHHHH--HHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccchhhhhhhhhhccccc
Confidence 555544443 3455578999999999999999953221
Q ss_pred ---hHHHHHHHHHHHHHHhHHHH-HHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CC
Q 004372 265 ---ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KV 330 (758)
Q Consensus 265 ---~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~ 330 (758)
.+++++.+.+.+..+.+|+| |.-.|..++...... .-.+...+++..++||.+|++..++.. ++
T Consensus 293 ~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~ 370 (438)
T PRK14856 293 QSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGIFLITFISEKLKITARPKGI 370 (438)
T ss_pred CCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCC
Confidence 24567788888988999999 889999987542221 123455677788899999998887652 46
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 331 PLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 331 ~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
+|++-.-.|++-+..=++++-+.+.+++
T Consensus 371 ~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 371 SWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888888888655555788888888884
No 24
>PRK15456 universal stress protein UspG; Provisional
Probab=99.14 E-value=1.2e-10 Score=110.70 Aligned_cols=133 Identities=12% Similarity=0.116 Sum_probs=88.4
Q ss_pred eEEEEEeecCC--ChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 414 FRILACFHSAR--NIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~--~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
.|||+|+++++ +...+++.+..++.. . .+++++|+++...... . .........+.+ ...++..+.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~---~-~~l~llhv~~~~~~~~-~---~~~~~~~~~~~~----~~~~~~~~~l 70 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD---D-GVIHLLHVLPGSASLS-L---HRFAADVRRFEE----HLQHEAEERL 70 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc---C-CeEEEEEEecCccccc-c---cccccchhhHHH----HHHHHHHHHH
Confidence 47999999984 899999999998753 3 4799999986432111 0 000000000000 0012222223
Q ss_pred HHhhh---ccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAFQQ---LSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~~~---~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+++.+ ..++++++.+..+ ++.++|++.|++.++||||||.|++. ..+. .+||+.++|++++||||-|
T Consensus 71 ~~~~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~------llGS~a~~v~~~a~~pVLv 140 (142)
T PRK15456 71 QTMVSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTH------LLGSNASSVIRHANLPVLV 140 (142)
T ss_pred HHHHHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-ccce------ecCccHHHHHHcCCCCEEE
Confidence 33322 2457788877776 89999999999999999999999863 4332 3799999999999999855
No 25
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.12 E-value=5.9e-09 Score=111.89 Aligned_cols=253 Identities=19% Similarity=0.247 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCchhHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFM 163 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~l~l 163 (758)
...+.+.+.-+.+|.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-+.+.. ... ...+|.. +.+.=+
T Consensus 58 sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GWgI-PmATDI 134 (389)
T PRK09560 58 SLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGWAI-PAATDI 134 (389)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCcccc-ccHHHH
Confidence 34566677777889999999998776642 22333 45667788888765433221 111 1123322 122222
Q ss_pred HHHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchH
Q 004372 164 GVALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEET 224 (758)
Q Consensus 164 ~~~ls~Ts~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~ 224 (758)
+. ...++.=+ +..+..+....++-|++||+.++++.++..+-..+ +...+..
T Consensus 135 AF---------AlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~~i~~~~L~~a~~~~~~l~~ln~~~v~~~ 205 (389)
T PRK09560 135 AF---------ALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYTSDLSLPALALAAIAIAVLFLLNRLGVTKL 205 (389)
T ss_pred HH---------HHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecCCCCCHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 22 22222212 23677788999999999999998887765431110 4555555
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCC------hhHHHHHHHHHHHHHHhHHHH-HHHhcccccchhh
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP------FANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATI 297 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~------~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l 297 (758)
..+..+..++ .+....-|+|+.++..++|+.+|...+ -.++++++++++++.+.+|+| |.-.|..++-..+
T Consensus 206 ~~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~ 283 (389)
T PRK09560 206 TPYLIVGAIL--WFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAFANAGVSLAGISL 283 (389)
T ss_pred hHHHHHHHHH--HHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCCcH
Confidence 6665555443 344557899999999999999996322 246788999999988889999 8889988842222
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 298 QGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 298 ~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
.. ..-.+...+++..++||.+|++..++.. +++|++-..+|++-+..=++++-+.+.++.
T Consensus 284 ~~-~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 353 (389)
T PRK09560 284 SS-LTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSLAFG 353 (389)
T ss_pred Hh-ccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 21 1123445677788899999998887652 468888888888655555788888888883
No 26
>PRK15005 universal stress protein F; Provisional
Probab=99.10 E-value=3.2e-10 Score=107.71 Aligned_cols=135 Identities=18% Similarity=0.146 Sum_probs=87.3
Q ss_pred eEEEEEeecCCC--hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 414 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~~--~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
.+||+|++++++ ...+++.+..++.. ...+++++|+++............. ......+ ...++..+.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~---~~~~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~~l 72 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI---DDAEVHFLTVIPSLPYYASLGLAYS---AELPAMD----DLKAEAKSQL 72 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc---cCCeEEEEEEEccCccccccccccc---ccchHHH----HHHHHHHHHH
Confidence 379999999997 46888888888753 5678999999974322110000000 0000000 0111222333
Q ss_pred HHhhhc---cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAFQQL---SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~~~~---~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+++.+. .+++++..+..+ +..+.|++.|++.++||||||.|+ .+..+. .+|++..+|++++||||.|
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~G---~p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~------llGS~a~~vl~~a~cpVlv 142 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEEG---SPKDRILELAKKIPADMIIIASHR-PDITTY------LLGSNAAAVVRHAECSVLV 142 (144)
T ss_pred HHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHHHcCCCEEEEeCCC-CCchhe------eecchHHHHHHhCCCCEEE
Confidence 333322 456677776655 899999999999999999999984 333332 3799999999999999865
No 27
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.09 E-value=8.7e-09 Score=110.37 Aligned_cols=252 Identities=21% Similarity=0.292 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCchhHHHHHHH
Q 004372 92 VLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET-ISKGVDSTSFLVFMG 164 (758)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~l~l~ 164 (758)
..+.+.+.-+.+|.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+.. ... ...+|.. +.+.=++
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GWaI-P~ATDIA 135 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGWAI-PAATDIA 135 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCcccc-ccHHHHH
Confidence 4566677777889999999998777642 33333 45567788888665432221 111 1123322 1222222
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------CCCCCchHH
Q 004372 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSG------------------SGEPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~------------------~~~~~~e~~ 225 (758)
.+ ..++.=+ +..+..+....++-|++||+.++++.++..+-.- .+...+...
T Consensus 136 Fa---------lgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 206 (388)
T PRK09561 136 FA---------LGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYTSDLSMVSLGVAAVAIAVLAVLNLCGVRRTS 206 (388)
T ss_pred HH---------HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCCCccHHHHHHHHHHHHHHHHHHHcCCccch
Confidence 22 2222212 3367778899999999999999888776543110 044555556
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHHHHHhHHHH-HHHhcccccchhhchh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP----FANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGL 300 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~----~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~ 300 (758)
.+.++..++ .+....-|+|+.++..+.|+.+|...+ -.+++++++++.++.+.+|+| |.-.|..++-..+..
T Consensus 207 ~Y~~~G~~l--W~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~- 283 (388)
T PRK09561 207 VYILVGVVL--WVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAGVSLQGVTLDG- 283 (388)
T ss_pred HHHHHHHHH--HHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCCeeeccCcHHh-
Confidence 665555443 344557899999999999999996322 246788999999989999999 888898883212211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 301 QSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 301 ~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
..-.+...+++..++||.+|++..++.. +++|++-.-+|++-+..=++++-+.+.+++
T Consensus 284 ~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 284 LTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1122345667788899999998887652 468888888888655555788888888884
No 28
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.09 E-value=1.3e-08 Score=108.78 Aligned_cols=255 Identities=16% Similarity=0.215 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (758)
...+.+.+.-+.+|.|.+|+|+..+.+.. +.|++ ..-++.|+++|.++-..+.. ......+|.. +.+.=++
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~--~~~~~~GW~I-P~ATDIA 131 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINH--DIKVINGWAI-PSATDIA 131 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhcc--CCcccCcccc-ccHHHHH
Confidence 34566777777889999999998766542 33333 45677788888765443332 1111123322 1222222
Q ss_pred HHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------CC-CCCchHH
Q 004372 165 VALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG------------------SG-EPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~------------------~~-~~~~e~~ 225 (758)
.++ -...+-- +..+..+.-..++-|++||+.++++.++..+-.- .+ ++.+...
T Consensus 132 FAl-------gvLallG-~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~A~~~~~~l~~~nr~~~v~~~~ 203 (383)
T PRK14854 132 FTL-------GILALLG-TRVPAKLKLLVITIAIFDDIAAIAIIAIFYTKSLSLLSLSLGTLFILAMIICNRIFKINRSS 203 (383)
T ss_pred HHH-------HHHHHhc-CCCCHHHHHHHHHHHHHHhhhhHhheeeecCCCccHHHHHHHHHHHHHHHHHHHhcCCceeh
Confidence 222 2211112 2367788888999999999999887766532110 03 2556555
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHHHHhHHHH-HHHhcccccchhhchh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGL 300 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~----~~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~ 300 (758)
.+.++..+ ..+....-|+|+.++..+.|+++|... .-.++++++++++++.+.+|+| |.-.|..++-..+..
T Consensus 204 ~Y~~~G~~--lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~- 280 (383)
T PRK14854 204 VYVVLGFF--AWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGISFSGISFSI- 280 (383)
T ss_pred HHHHHHHH--HHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCeeeccCcHHh-
Confidence 66554443 344556789999999999999999632 1246788999999999999999 888998884222221
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004372 301 QSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDR 359 (758)
Q Consensus 301 ~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~ 359 (758)
....+...+++..++||.+|++..++.. +++|++-...|++-+..=++++-+.+.+++.
T Consensus 281 ~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~~ 349 (383)
T PRK14854 281 LFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFND 349 (383)
T ss_pred hcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 1123445677788899999998887652 3688998888886555557888888888853
No 29
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.04 E-value=8.6e-10 Score=104.91 Aligned_cols=132 Identities=8% Similarity=0.019 Sum_probs=86.2
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.|||+|++++++...+++.+..++.. .+.+++++|+.+......+... . ....... ....++..+.+++
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~--~--~~~~~~~----~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARP---YNAKVSLIHVDVNYSDLYTGLI--D--VNLGDMQ----KRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHh---hCCEEEEEEEccChhhhhhhhh--h--cchHHHH----HHHHHHHHHHHHH
Confidence 47999999999999999999988854 5678999998431111000000 0 0000000 0112333344555
Q ss_pred hhhccceEEE-EeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 494 FQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 494 ~~~~~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+.+..++.+. ..+..+ +.++.|++.|++.++||||||.|++ + .. .++|+.++|+++|||||-|
T Consensus 73 ~~~~~~~~~~~~~~~~G---~p~~~I~~~a~~~~~DLIV~Gs~~~----~-~~----~lgSva~~v~~~a~~pVLv 136 (144)
T PRK15118 73 LSTNAGYPITETLSGSG---DLGQVLVDAIKKYDMDLVVCGHHQD----F-WS----KLMSSARQLINTVHVDMLI 136 (144)
T ss_pred HHHhCCCCceEEEEEec---CHHHHHHHHHHHhCCCEEEEeCccc----H-HH----HHHHHHHHHHhhCCCCEEE
Confidence 5554555543 333344 8999999999999999999999952 1 11 1679999999999999855
No 30
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.04 E-value=1.9e-08 Score=109.17 Aligned_cols=250 Identities=20% Similarity=0.234 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (758)
...+.+.+--+.+|.|.+|+|+.-+.+.. +.|++ ..-++.|+++|.++-..+.. ......+|.. +.+
T Consensus 62 sl~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~~~~GWgI-PmA---- 134 (423)
T PRK14855 62 SLEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGPGASGWGV-PMA---- 134 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCccCcccc-ccH----
Confidence 34566677777889999999998777642 33333 45567788888654332211 1111123322 122
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~ 225 (758)
|+.+....+|.=+ +..+..+....++-|++||+.++++.++..+-..+ +...+...
T Consensus 135 -----TDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~~~v~~~~ 209 (423)
T PRK14855 135 -----TDIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTSGLNLLALLLAALTWALALLAGRLGVTSLK 209 (423)
T ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCCCCCHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 2222222222222 23567788899999999999998777665431100 44555555
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-CCh------------------------------------hHHH
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-GPF------------------------------------ANAL 268 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~-~~~------------------------------------~~~l 268 (758)
.++++..++ .+....-|+|+.++..++|+++|.. .+. .+++
T Consensus 210 ~Y~~~G~~l--W~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rl 287 (423)
T PRK14855 210 IYAVLGALL--WFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRL 287 (423)
T ss_pred HHHHHHHHH--HHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhhhccccCCHHHHH
Confidence 555544433 3445578999999999999999963 111 2467
Q ss_pred HHHHHHHHHHHhHHHH-HHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHH
Q 004372 269 VEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALA 337 (758)
Q Consensus 269 ~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~ 337 (758)
++++++.+..+.+|+| |+-.|..++-.. .. .+...+++..++||.+|++..++.. +++|++-.-
T Consensus 288 eh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~g 362 (423)
T PRK14855 288 EHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLHMLG 362 (423)
T ss_pred HHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence 7889999988999999 888998884332 21 2345666788899999998887652 468899888
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 004372 338 LGILMNTKGLVELIVLNIGKDR 359 (758)
Q Consensus 338 lgl~l~~kG~~~l~~~~~~~~~ 359 (758)
.|++-+..=++++-+.+.+++.
T Consensus 363 v~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 363 AGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred HHHHHHHHHHHHHHHHHhhCCC
Confidence 8886555557888888888843
No 31
>PRK09982 universal stress protein UspD; Provisional
Probab=99.04 E-value=7e-10 Score=105.45 Aligned_cols=132 Identities=8% Similarity=0.040 Sum_probs=85.3
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.+||+|++++++...+++.+..+++. .+.+++++|+++......+....... ... .+ ...++..+.+++
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~---~~a~l~llhV~~~~~~~~~~~~~~~~--~~~--~~----~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH---NDAHLTLIHIDDGLSELYPGIYFPAT--EDI--LQ----LLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH---hCCeEEEEEEccCcchhchhhhccch--HHH--HH----HHHHHHHHHHHH
Confidence 47999999999999999999998854 67889999998643211110000000 000 00 011122222333
Q ss_pred hhhc-cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 494 FQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 494 ~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
..+. ....++..+..+ ++.+.||++|++.++||||||.| +...+ ..++ +.++|+++++|||-|
T Consensus 73 ~~~~~~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-------~~~~-va~~V~~~s~~pVLv 136 (142)
T PRK09982 73 LTKNIQWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-------RLMP-AYRGMINKMSADLLI 136 (142)
T ss_pred HHHhcCCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-------HHHH-HHHHHHhcCCCCEEE
Confidence 3332 233466666666 99999999999999999999976 43221 1243 999999999999755
No 32
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.03 E-value=9.8e-10 Score=101.58 Aligned_cols=121 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 494 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 494 (758)
|||+|+++++....+++.+..++.. .+.+++++|+++.... . . .++.++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~~--~-----------~-------~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADR---LKAPWYVVYVETPRLN--R-----------L-------SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHH---hCCCEEEEEEecCccc--c-----------C-------CHHHHHHHHHHHHH
Confidence 6899999999999999999999854 6778899999863211 0 0 02234555555555
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcC-CCceEE
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGI 568 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~A-pCsVgI 568 (758)
.++.+++. .+..+ .++.+.|++.|+|.++|+||||+|+++.....+ +|++.++|+++| ||+|-|
T Consensus 58 ~~~~~~~~--~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~------~Gs~~~~v~~~a~~~~v~v 122 (124)
T cd01987 58 AEELGAEV--VTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF------RGSLVDRLLRRAGNIDVHI 122 (124)
T ss_pred HHHcCCEE--EEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh------cccHHHHHHHhCCCCeEEE
Confidence 54444443 34444 688999999999999999999999886654433 889999999999 999765
No 33
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.00 E-value=1.3e-09 Score=101.63 Aligned_cols=133 Identities=19% Similarity=0.252 Sum_probs=91.6
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH-
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE- 492 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~- 492 (758)
.|||+|++++++...+++.+..++.. ...+++++|+++................. ..++......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~---~~~~i~~l~v~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR---SGAEITLLHVIPPPPQYSFSAAEDEESEE-----------EAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH---HTCEEEEEEEEESCHCHHHHHHHHHHHHH-----------HHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh---hCCeEEEEEeecccccccccccccccccc-----------ccchhhhhhhH
Confidence 48999999999999999999988854 67889999999876654432111111000 0001110000
Q ss_pred --Hhh-hccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 493 --AFQ-QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 493 --~~~-~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
... ............. .+..++|++.+++.++|+||||.|++....+.+ ++++.+++++++||||.|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~------~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEAEGGIVIEVVIES---GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL------FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHTTSEEEEEEEE---SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS------SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhhhccceeEEEEEe---eccchhhhhccccccceeEEEeccCCCCccCCC------cCCHHHHHHHcCCCCEEEe
Confidence 111 1233444444444 499999999999999999999999876555443 8999999999999998663
No 34
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.99 E-value=7.7e-10 Score=122.08 Aligned_cols=335 Identities=13% Similarity=0.153 Sum_probs=224.2
Q ss_pred HHHHHHHHHcccC--CChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhc
Q 004372 43 LTRGLAFILRPLR--QPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQT 120 (758)
Q Consensus 43 ~~~~~~~ll~~l~--~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~ 120 (758)
++.+..-+-.+++ .|.-...|+.|+++|-...+.... .-+.-++ +.+--.-+--++|-+|.-|.-+.+..|
T Consensus 53 LaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~---~~~~L~s----~vFFlyLLPPIvlDAGYfMp~r~Ff~N 125 (670)
T KOG1966|consen 53 LAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATI---APFFLES----DVFFLYLLPPIVLDAGYFMPNRAFFEN 125 (670)
T ss_pred HHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhcc---ccccccc----cchhhhhcCHHHhcccccCccHHHHhc
Confidence 3444444444554 798888899999998644322110 0000000 001001112277999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH--hhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHH
Q 004372 121 GKKALGIAIAGISLPFALGIGSSFLLR--ETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAA 198 (758)
Q Consensus 121 ~~~~~~i~~~~~~i~~~~~~~~~~~l~--~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~ 198 (758)
....+..++.|.+.-.+.-.+..|.+. ..++.. ......+..|...|..++..|..+..|.. .|.-+=-++.++++
T Consensus 126 lgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~-~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~VFGESL 203 (670)
T KOG1966|consen 126 LGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMS-IGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIVFGESL 203 (670)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeeeehhhh
Confidence 999999999999886443322333332 222212 22356788888999999999999999999 68888888999999
Q ss_pred HHHHHHHHHHHHHHHHhcC-----------------------------------------CCCCchHHHHHHHHHHHHHH
Q 004372 199 VNDVAAWILLALAVALSGS-----------------------------------------GEPVEETYVCATLAAVLAAG 237 (758)
Q Consensus 199 i~D~~~~~ll~~~~~~~~~-----------------------------------------~~~~~e~~~~~~l~~~l~~~ 237 (758)
+||.+.+++.-+...+..- .+.++-...++++.+...+|
T Consensus 204 lNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYlaY 283 (670)
T KOG1966|consen 204 LNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLAY 283 (670)
T ss_pred hcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHHH
Confidence 9999999888776554320 34456667788899999999
Q ss_pred HHHHHhchhHHHHHHHHHHhcCCC-----CChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHH
Q 004372 238 FITDAIGIHAMFGAFVVGVLVPKE-----GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILT 312 (758)
Q Consensus 238 ~la~~~g~~~~lgaf~aGL~l~~~-----~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~ 312 (758)
..+|.+++|++++-.+.|+++... ..-...-++..-...+..--++.|++.|..+= +. ...+.|..+.+-++.
T Consensus 284 L~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v-~~-~h~wd~~Fi~~T~~f 361 (670)
T KOG1966|consen 284 LTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTV-SS-NHHWDFAFICLTLVF 361 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhc-CC-cceeehhhhhhHHHH
Confidence 999999999999999999999751 12222333444445566777888999998753 22 223456666666677
Q ss_pred HHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCccchhhHHHHHHHHHHHHHHH
Q 004372 313 ACLGKIVGTFVVSLSF------KVPLREALALGILMNTKGLVELIVLNIGK-----DRKVLNDQVFAIMILMAVVTTFMT 381 (758)
Q Consensus 313 ~~~~K~~~~~~~~~~~------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~-----~~~~i~~~~~~~lv~~~lv~t~i~ 381 (758)
+++.|++++...+++. +++..|.+.++. =+-||.+++.+...-- ..+..-..++.++.+++.+..+..
T Consensus 362 c~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp~K~~Fvttti~VIfFTVflQGiTI 440 (670)
T KOG1966|consen 362 CLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVPAKNMFVTTTIAVIFFTVFLQGITI 440 (670)
T ss_pred HHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCCcccceEeeeeEEEeeeeeecccch
Confidence 7888999988888765 467788777766 3568877766543222 123333344445555556666777
Q ss_pred HHHHHHHc
Q 004372 382 TPLVMAVY 389 (758)
Q Consensus 382 ~plv~~l~ 389 (758)
-|+++++-
T Consensus 441 kplvk~L~ 448 (670)
T KOG1966|consen 441 KPLVKFLK 448 (670)
T ss_pred HHHHHHHc
Confidence 89999985
No 35
>PRK10116 universal stress protein UspC; Provisional
Probab=98.85 E-value=1.9e-08 Score=95.25 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=87.9
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.+||++++.+++...+++.+..++.. ...+++++|+++.............. . .. ....++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~---~--~~----~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARP---VNGKISLITLASDPEMYNQFAAPMLE---D--LR----SVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHH---hCCEEEEEEEccCcccchhhhHHHHH---H--HH----HHHHHHHHHHHHH
Confidence 58999999999999999999999854 56788999998643211111000000 0 00 0112233344555
Q ss_pred hhhccceEEE-EeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 494 FQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 494 ~~~~~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
+.+..+++.. .... ..+..+.|++.|++.++||||+|.|++...+. +.++..+|++++||||-|+
T Consensus 72 ~~~~~~~~~~~~~~~---~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~--------~~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 72 LIQDADYPIEKTFIA---YGELSEHILEVCRKHHFDLVICGNHNHSFFSR--------ASCSAKRVIASSEVDVLLV 137 (142)
T ss_pred HHHhcCCCeEEEEEe---cCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH--------HHHHHHHHHhcCCCCEEEE
Confidence 5544455443 2332 35899999999999999999999998743321 2368899999999998664
No 36
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.84 E-value=1.2e-08 Score=109.27 Aligned_cols=257 Identities=20% Similarity=0.264 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhHH---hccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (758)
...+.+.+--+.+|.|.+|+|+..+.+. ++.||+ ..-++.|+++|.++-..+.. ... ...-.++
T Consensus 54 ~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~~n~--~~~--------~~~~GW~ 123 (378)
T PF06965_consen 54 SLHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLAFNA--GGP--------EAAHGWA 123 (378)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG----SST--------THHHHTS
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHheeec--CCC--------CcCceEE
Confidence 4566777777888999999999877664 233333 45677788888654332211 000 0111111
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~ 225 (758)
+- ..|+.+....++.=+ +..+..+....++-|++||+.++++.++..+-..+ +.+.+...
T Consensus 124 IP-~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~~i~~~~L~~a~~~~~~l~~l~r~~v~~~~ 202 (378)
T PF06965_consen 124 IP-MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTDGISLLWLLLAAAALLLLFVLNRLGVRSLW 202 (378)
T ss_dssp SS-S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHTT---TH
T ss_pred ec-ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCCCCCHHHHHHHHHHHHHHHHHHHCCCceeh
Confidence 11 123333333333323 23567788999999999999999988876542111 34444444
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCh--------hHHHHHHHHHHHHHHhHHHH-HHHhcccccchh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF--------ANALVEKVEDLVSGIFLPLY-FVSSGLKTNIAT 296 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~--------~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~ 296 (758)
.+..+.. ...+....-|+|+.++..+.|+.+|..++. .+++++++++.++.+.+|+| |+..|..++-..
T Consensus 203 ~Y~~~G~--~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~ 280 (378)
T PF06965_consen 203 PYLLLGI--LLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALANAGVSLSGSS 280 (378)
T ss_dssp HHHHHHH--HHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS-
T ss_pred HHHHHHH--HHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCc
Confidence 4444433 334455578999999999999999975444 35888899999989999999 899999988655
Q ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 004372 297 IQGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDRKV 361 (758)
Q Consensus 297 l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~ 361 (758)
+... .-.+...+++..+++|.+|.+..++.. ++++++-...|++-+..=++++-+...+++...
T Consensus 281 ~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~~~ 354 (378)
T PF06965_consen 281 LGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAGLAFDDPA 354 (378)
T ss_dssp --TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHHHHSTT-S
T ss_pred hHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCChh
Confidence 4321 223344566778899999998877653 356777667777555555788888888887633
No 37
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.75 E-value=6.3e-08 Score=89.03 Aligned_cols=129 Identities=23% Similarity=0.264 Sum_probs=92.0
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 494 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 494 (758)
+||+|+++++....+++.+..++.. .+.+++++|+.+............. ..+.++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~---~~~~i~~l~v~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARR---LGAELVLLHVVDPPPSSAAELAELL-------------EEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCCCCcchhHHHHH-------------HHHHHHHHHHHHHH
Confidence 5899999999999999999999864 5788999999865443321000000 01123444444443
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
....+++++.....+ +..++|++.+++.++|++|+|++++....+. .+++..+++++++||||-+
T Consensus 65 ~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~------~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAEAGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRL------LLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred HhcCCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcccee------eeccHHHHHHhCCCCCEEe
Confidence 334577777776655 4489999999999999999999887543332 3788999999999999854
No 38
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.74 E-value=1.2e-06 Score=90.22 Aligned_cols=246 Identities=20% Similarity=0.272 Sum_probs=162.4
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHh---ccchh---HHHHHHHHHHHHHHHHHHHHHHHhh---hhcCCchhHHHHHHH
Q 004372 94 DTLANLGLIFFMFLVGLELDPKSLRQ---TGKKA---LGIAIAGISLPFALGIGSSFLLRET---ISKGVDSTSFLVFMG 164 (758)
Q Consensus 94 ~~l~~lgl~~~lF~~Gle~d~~~l~~---~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~---~~~~~~~~~~~l~l~ 164 (758)
..+-+--+..|.+.+|+|+..+.+.. +++++ ..-++.|+++|.++-. .+... ...+|.. +.
T Consensus 64 ~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~----~~n~~~p~~~~GWaI-P~----- 133 (390)
T COG3004 64 LWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYL----ALNAGDPATLEGWAI-PM----- 133 (390)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhh----eeecCChhhhcCcCc-cc-----
Confidence 34444445668889999998887753 33333 3445667777754322 22111 1123322 12
Q ss_pred HHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372 165 VALSITAFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~ 225 (758)
.|+.+-...+++=+ +..++.+.-..++-+++||+-++++.++..+-.-+ +...+...
T Consensus 134 ----ATDiAFAlGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~~Ls~~al~~a~~~i~vL~~lN~~~v~~l~ 209 (390)
T COG3004 134 ----ATDIAFALGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTDLSMAALGIAALAIAVLAVLNRLGVRRLS 209 (390)
T ss_pred ----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcCCccHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence 22333333333323 44688888899999999999999888776531111 44455555
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHHHHhHHHH-HHHhccccc---chhh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLPLY-FVSSGLKTN---IATI 297 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~----~~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~d---l~~l 297 (758)
.++++..++..+. ..-|+|..+...+.|+.+|-.. +.-+++++.+.+.+..+.+|+| |.-.|..++ +..+
T Consensus 210 ~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l 287 (390)
T COG3004 210 PYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGL 287 (390)
T ss_pred HHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccccccccc
Confidence 5655555555443 3679999999999999999532 3446788889999999999999 889998876 4444
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 004372 298 QGLQSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDR 359 (758)
Q Consensus 298 ~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~ 359 (758)
.+ .+...+++..+++|.+|++..++.. +.+|++-...+++.+..=.+++-+...+++.
T Consensus 288 ~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 288 TS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred cc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 32 3445677788999999998887652 4688888888886655557888888887765
No 39
>PRK11175 universal stress protein UspE; Provisional
Probab=98.74 E-value=2.4e-08 Score=107.43 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=92.2
Q ss_pred ceEEEEEeecCCCh-------hhHHHHHHHhccCCCCC-CceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCc
Q 004372 413 QFRILACFHSARNI-------PSTINLLEALRGIQKSE-GLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 484 (758)
Q Consensus 413 elriLv~v~~~~~~-------~~li~La~~~~~~~~~~-p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~ 484 (758)
..+||+|++.++.. ..+++.+..++.. . ..+++++|+.+............. ......+ ...
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~---~~~a~l~ll~v~~~~~~~~~~~~~~~---~~~~~~~----~~~ 221 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQ---LNHAEVHLVNAYPVTPINIAIELPEF---DPSVYND----AIR 221 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhh---CcCCceEEEEEecCcchhcccccccc---chhhHHH----HHH
Confidence 35899999987653 4688888888754 3 567899999864322110000000 0000000 111
Q ss_pred chHHHHHHHhhhccceEEE-EeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC
Q 004372 485 NHIVVAFEAFQQLSRVSVR-PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 563 (758)
Q Consensus 485 ~~i~~af~~~~~~~~v~v~-~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap 563 (758)
++..+.++++.+..+++.. ..+.. .+..+.|++.|+++++||||||.|++.+..+.+ +|++.++|++++|
T Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l------lGS~a~~v~~~~~ 292 (305)
T PRK11175 222 GQHLLAMKALRQKFGIDEEQTHVEE---GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF------LGNTAEHVIDHLN 292 (305)
T ss_pred HHHHHHHHHHHHHhCCChhheeecc---CCHHHHHHHHHHHhCCCEEEECCCccCCCccee------ecchHHHHHhcCC
Confidence 2333445555544445432 33333 488999999999999999999999887665544 8999999999999
Q ss_pred CceEEEecCCC
Q 004372 564 CSVGILIDRGL 574 (758)
Q Consensus 564 CsVgIlvdrg~ 574 (758)
|||.++-.+|+
T Consensus 293 ~pVLvv~~~~~ 303 (305)
T PRK11175 293 CDLLAIKPDGY 303 (305)
T ss_pred CCEEEEcCCCC
Confidence 99977656665
No 40
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=98.33 E-value=3.7e-06 Score=80.00 Aligned_cols=142 Identities=18% Similarity=0.248 Sum_probs=93.8
Q ss_pred eEEEEEee-cCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 004372 414 FRILACFH-SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 492 (758)
Q Consensus 414 lriLv~v~-~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~ 492 (758)
.+++++++ +++......+.+...+.. ....++++++++................ ............++..+..+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 80 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKR---LGAPLILLVVIDPLEPTALVSVALADAP--IPLSEEELEEEAEELLAEAK 80 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHh---cCCeEEEEEEecccccccccccccccch--hhhhHHHHHHHHHHHHHHHH
Confidence 57999999 899888888888888754 4556678888865443221110000000 00000000022355566666
Q ss_pred HhhhccceE-EEEeEEecCCCch-HHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 493 AFQQLSRVS-VRPMTAISSMSDM-HEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 493 ~~~~~~~v~-v~~~~~vs~~~~m-~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
+..++.++. ++.....+ +. .+.|++.|.+.++|+||||.+++++.++. .+|++.++|++++||||-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~------llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 81 ALAEAAGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRL------LLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHHHHcCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCccccce------eeehhHHHHHhcCCCCEEEE
Confidence 665555555 46666655 66 69999999999999999999988776653 38999999999999998553
No 41
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.32 E-value=0.0012 Score=72.77 Aligned_cols=288 Identities=19% Similarity=0.204 Sum_probs=164.7
Q ss_pred CCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHH
Q 004372 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISL 134 (758)
Q Consensus 55 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i 134 (758)
.+|.++-.++.|+++.. +|.++ ++.+.+..+.+.+..+-+-+++.=++.|++.++|.++|.+.. +..-.+
T Consensus 24 ~l~~~vl~~~~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~ 93 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAV 93 (378)
T ss_pred hcCHHHHHHHHHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHH
Confidence 37888888888888885 33331 123456778888888888888888899999999999887643 333344
Q ss_pred HHHHHHHHHHHHHhhh-hcCCchhH-HHHHHHHHH-hhccHHHHHHHHHhccccCChhHHHHHHHHHHHH-HHHHHHHHH
Q 004372 135 PFALGIGSSFLLRETI-SKGVDSTS-FLVFMGVAL-SITAFPVLARILAELKLLTADVGRMAMSAAAVND-VAAWILLAL 210 (758)
Q Consensus 135 ~~~~~~~~~~~l~~~~-~~~~~~~~-~~l~l~~~l-s~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D-~~~~~ll~~ 210 (758)
..++|..+++.+.... +++ .|. ...+.|.-. ...-+.-+.+. ++ .+ .-.+++++.-| +..-+.+.+
T Consensus 94 g~viG~~va~~l~~~~l~~~--~wk~ag~l~gsyiGGs~N~~Av~~a---l~---~~--~~~~~a~~aaDnv~~~~~~~~ 163 (378)
T PF05684_consen 94 GTVIGAVVAFLLFGGFLGPE--GWKIAGMLAGSYIGGSVNFVAVAEA---LG---VS--DSLFAAALAADNVVMALWFAF 163 (378)
T ss_pred HHHHHHHHHHHHHhhcccch--HHHHHHHHHhcccCchhHHHHHHHH---HC---CC--HHHHHHHHHHHHHHHHHHHHH
Confidence 5555666665554432 211 111 122222111 11122333333 23 22 23444444444 444455555
Q ss_pred HHHHhcC------------------------------CCCCchHHHHHHHHHHHHHHHHHHHhch-------------hH
Q 004372 211 AVALSGS------------------------------GEPVEETYVCATLAAVLAAGFITDAIGI-------------HA 247 (758)
Q Consensus 211 ~~~~~~~------------------------------~~~~~e~~~~~~l~~~l~~~~la~~~g~-------------~~ 247 (758)
...+... +++. ...+...+...+....+++.++- -.
T Consensus 164 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~la~a~~v~~~s~~la~~l~~~~~~~~~~~~~ 242 (378)
T PF05684_consen 164 LLALPPFARKFDRWTKADTSSIEALEEEIEAEEAEWARKPI-SQDLAFLLAVAFAVVALSHALAAWLPPLFAGISSSTWL 242 (378)
T ss_pred HHHHhhhhHHhhhccCCCccccchhhhhhhhhhhccccCCc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 4444320 1111 12344555555544444443322 13
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004372 248 MFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS 327 (758)
Q Consensus 248 ~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~ 327 (758)
++-....|++.. .+|..+.+ .--+.+. .+++-+||+.+|++.|+..+.+.. + .+++.++.+..-.+..++.+++
T Consensus 243 il~~tt~~l~~~-~~~~~~~l-~g~~~lg-~~lly~ffa~IGa~a~i~~l~~ap-~--~~l~~~i~l~iH~~l~l~~~kl 316 (378)
T PF05684_consen 243 ILTVTTLGLATS-FPPFRKLL-RGASELG-TFLLYLFFAVIGASADISELLDAP-S--LFLFGFIILAIHLLLMLILGKL 316 (378)
T ss_pred HHHHHHHHHHHh-ccchhhcC-CchHHHH-HHHHHHHHHHHccccCHHHHHHhH-H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677766 46666554 3445554 778889999999999999887522 2 2333445556677778889999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHH
Q 004372 328 FKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIM 370 (758)
Q Consensus 328 ~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~l 370 (758)
+|+|..+...-+- -|.-|..+......++...+..+-+...+
T Consensus 317 ~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~pgvL~gv 358 (378)
T PF05684_consen 317 FKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPPGVLMGV 358 (378)
T ss_pred HCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHHHHHHHH
Confidence 9999977555444 56667666555555555555544444443
No 42
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.29 E-value=0.00011 Score=77.26 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=148.8
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHH
Q 004372 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILA 180 (758)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~ 180 (758)
+..++|-.|-++|++...+..||...+.+.-+.+..+++.++..+++.. .......+.+-.+++.+--..-..+..
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~----g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAE----GIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcc----cccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 4568899999999999888888888787778888877777777666532 111244566666677666666667777
Q ss_pred hccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHhc
Q 004372 181 ELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDA--IGIHAMFGAFVVGVLV 258 (758)
Q Consensus 181 elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~la~~--~g~~~~lgaf~aGL~l 258 (758)
|.| -++|.|-..+ ..++|.=.+.+++ ++.+++++. ..+-+.+=|++.|+++
T Consensus 127 ~yG-~~~d~gA~~~--~sl~~GPf~tm~a------------------------Lga~gLA~ip~~~lv~lilpILiGmil 179 (312)
T PRK12460 127 EFG-DERDVGAISI--LSLNDGPFFTMLA------------------------LGAAGLANIPIMALVAALLPLVLGMIL 179 (312)
T ss_pred HcC-CHhhhhHHhh--hhhccCcHHHHHH------------------------HHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 877 3555554332 2233332222222 223333332 1223366688889999
Q ss_pred CCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 004372 259 PKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALAL 338 (758)
Q Consensus 259 ~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~l 338 (758)
.|-.+ .+.+.+++-. .+.+|+|-+..|.++|+.++... .+.-+ ++.+..++.-+...++..+++|.+.+.+..+
T Consensus 180 GNld~---~~~~~l~~Gi-~f~I~f~~f~LG~~lnl~~I~~~-G~~GI-lL~v~vv~~t~~~~~~i~rllg~~~~~g~li 253 (312)
T PRK12460 180 GNLDP---DMRKFLTKGG-PLLIPFFAFALGAGINLSMLLQA-GLAGI-LLGVLVTIVTGFFNIFADRLVGGTGIAGAAA 253 (312)
T ss_pred hccch---hhHHHHhccc-eEeHHHHHHHhcCCeeHHHHHHh-ChHHH-HHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 87332 3444555543 56899999999999999988642 22222 2223333344555666678889988887777
Q ss_pred H--HHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHH-HHcchh
Q 004372 339 G--ILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM-AVYKPA 392 (758)
Q Consensus 339 g--l~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~-~l~~~~ 392 (758)
| ..-+.-|-..++-..-.. +.. .+.-+..+.++++.|.+..|++. |++|+.
T Consensus 254 ~stAGnAIcgpAAVaAadP~~--~~~-~~~Ataqvaa~vivTail~P~~t~~~~k~~ 307 (312)
T PRK12460 254 SSTAGNAVATPLAIAAADPSL--APV-AAAATAQVAASVIVTAILTPLLTSWVAKKE 307 (312)
T ss_pred HHHhhHHHHHHHHHHHhchhH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7 433333333332222111 111 23455555666666777666655 555543
No 43
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.20 E-value=9.7e-06 Score=77.02 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=82.4
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccc---cCC---cCccccHHHHHHHHHhhcCCCCce
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS---VDM---AGNASMDEEVLSEFKLKTSRNGSV 661 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~---~~~---~~~~~~d~~~~~e~~~~~~~~~~v 661 (758)
+|++++.|.+..+.|+.+|.++|+.++.+++++++++.......... ... +..++.-++.+++++.... ...+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-RKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCC
Confidence 48999999999999999999999999999999999864321100000 000 0111222345555554432 2234
Q ss_pred EEEEEEec--ChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccc-cchhhhhcCCCCc-eeEEEEee
Q 004372 662 RYEERLVR--NTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELG-PVGSLLTSLEFST-ASVLIIQQ 732 (758)
Q Consensus 662 ~y~e~~v~--~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG-~iGd~las~d~~~-~SvLvvqq 732 (758)
.+...++. +..+.+-...+..+.||+++|+++ ..|+..+ -+| .+.+.+...- .. ++|||||.
T Consensus 80 ~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g----~~~l~~~----~~gssva~~Vi~~a-~~~c~Vlvv~~ 145 (146)
T cd01989 80 QCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS----DNHFSMK----FKKSDVASSVLKEA-PDFCTVYVVSK 145 (146)
T ss_pred eEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccC----CCceeec----ccCCchhHHHHhcC-CCCceEEEEeC
Confidence 44444443 444432222222238999999998 4555543 356 6888887653 33 79999984
No 44
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.10 E-value=3.5e-05 Score=71.48 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=76.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCC-CCceEEEEE
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR-NGSVRYEER 666 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~-~~~v~y~e~ 666 (758)
||+++..|.++.+.+|++|.+||+.++.+++++++.+....... ...+.+.+..++.++++...... +..+.+...
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSP---SQLEVNVQRARKLLRQAERIAASLGVPVHTIIR 77 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCc---chhHHHHHHHHHHHHHHHHHhhhcCCceEEEEE
Confidence 68999999999999999999999999999999999864322100 00111112223444444443221 112222222
Q ss_pred EecChHH-HHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 667 LVRNTAE-TIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 667 ~v~~~~e-~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
.-.+..+ +.+..++ .+.||+++|+++.+ ++ ...-+|..-+-+.. .+ ++||||+
T Consensus 78 ~~~~~~~~I~~~a~~-~~~dlIV~G~~~~~----~~----~~~~lGs~~~~v~~---~~~~pvlvv~ 132 (132)
T cd01988 78 IDHDIASGILRTAKE-RQADLIIMGWHGST----SL----RDRLFGGVIDQVLE---SAPCDVAVVK 132 (132)
T ss_pred ecCCHHHHHHHHHHh-cCCCEEEEecCCCC----Cc----cceecCchHHHHHh---cCCCCEEEeC
Confidence 2223333 3333322 23999999999822 22 22357888888875 33 7999884
No 45
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.09 E-value=1.1e-05 Score=74.85 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=81.7
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHH---HhhcCCCCceE
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF---KLKTSRNGSVR 662 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~---~~~~~~~~~v~ 662 (758)
.+||++++.|.++.+.|+.+|.++|++.+.+++++++.+.............+.+...++....+. ...........
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVI 81 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhcccee
Confidence 369999999999999999999999999999999999997543220000000000000000000000 00001123445
Q ss_pred EEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEE
Q 004372 663 YEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 730 (758)
Q Consensus 663 y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvv 730 (758)
+......+..+.+....+..++||+++|+++ -.++.+| -+|.+.+-++. .+ ++||||
T Consensus 82 ~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~----~~~~~~~----~~gs~~~~l~~---~~~~pVlvv 139 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAEEHNADLIVMGSRG----RSGLERL----LFGSVAEKLLR---HAPCPVLVV 139 (140)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCSEEEEESSS----TTSTTTS----SSHHHHHHHHH---HTSSEEEEE
T ss_pred EEEEEeeccchhhhhccccccceeEEEeccC----CCCccCC----CcCCHHHHHHH---cCCCCEEEe
Confidence 5555666666644444443449999999998 3344443 38888888886 34 699987
No 46
>PRK15005 universal stress protein F; Provisional
Probab=97.99 E-value=5.2e-05 Score=71.77 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=77.3
Q ss_pred ceEEEEeccCCcCh--HHHHHHHHHHhhCCCeEEEEEEEeecccccCcc---cccCC---cCccccHHHHHHHHHhhcCC
Q 004372 586 SYTITVLFFGGRDD--REALACGARMAEHPGISFIVIRFLLAADAIGNT---VSVDM---AGNASMDEEVLSEFKLKTSR 657 (758)
Q Consensus 586 ~~~I~v~f~GG~dd--reAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~---~~~~~---~~~~~~d~~~~~e~~~~~~~ 657 (758)
.++|++++.|.+++ +.|+++|.++|+..+.+++++++++........ ...+. +..++.-++.++++.++...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL 81 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC
Confidence 36899999999874 799999999999999999999999642211000 00000 00111112345555544322
Q ss_pred CCceEEEEEE-ecChHHHHHHHHhcc--CCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 658 NGSVRYEERL-VRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 658 ~~~v~y~e~~-v~~~~e~~~~i~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
..+.+...+ .+++.+ .+++..+ ++||+++|+++ .|+.+| =+|...+-+... + ++||||.
T Consensus 82 -~~~~~~~~v~~G~p~~--~I~~~a~~~~~DLIV~Gs~~-----~~~~~~----llGS~a~~vl~~---a~cpVlvVr 144 (144)
T PRK15005 82 -PTDRVHVHVEEGSPKD--RILELAKKIPADMIIIASHR-----PDITTY----LLGSNAAAVVRH---AECSVLVVR 144 (144)
T ss_pred -CCCceEEEEeCCCHHH--HHHHHHHHcCCCEEEEeCCC-----CCchhe----eecchHHHHHHh---CCCCEEEeC
Confidence 222222222 234444 3333332 39999999875 244443 378888888763 4 7999883
No 47
>PRK10116 universal stress protein UspC; Provisional
Probab=97.90 E-value=3.2e-05 Score=73.10 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=74.0
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCccccc-CCcCcccc---HHHHHHHHHhhcCCCCce
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV-DMAGNASM---DEEVLSEFKLKTSRNGSV 661 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~-~~~~~~~~---d~~~~~e~~~~~~~~~~v 661 (758)
.+||++++.+.++.+.||++|.++|+..+.+++++++.+........... .++.++.. -+++++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 46999999999999999999999999999999999997532110000000 00111111 123344443332 12
Q ss_pred EEEEEEecChHHHHHHHHhcc--CCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 662 RYEERLVRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 662 ~y~e~~v~~~~e~~~~i~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
......+..|.....+++... ++||+|+|+++ .++++.| +...+-++. .+ ++||||-
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~----~~~~~~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHN----HSFFSRA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCc----chHHHHH------HHHHHHHHh---cCCCCEEEEe
Confidence 122223333333334444443 39999999998 3444443 223444443 34 7999984
No 48
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.89 E-value=7.6e-05 Score=68.72 Aligned_cols=123 Identities=15% Similarity=0.081 Sum_probs=75.6
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEE
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 667 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~ 667 (758)
||++++.|.+..++|+.+|.++|++.+.+++++++.+.+... . .+..++.++++++.... ..+.+....
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~---------~-~~~~~~~l~~~~~~~~~-~~~~~~~~~ 69 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR---------L-SEAERRRLAEALRLAEE-LGAEVVTLP 69 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc---------C-CHHHHHHHHHHHHHHHH-cCCEEEEEe
Confidence 689999999999999999999999999999999998654311 0 11123444555443321 123333222
Q ss_pred ecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCceeEEEE
Q 004372 668 VRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 730 (758)
Q Consensus 668 v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~SvLvv 730 (758)
-.+..+.+.-..+..+.|++++|.++ -.+++++ -+|...+-++..--. .+|||+
T Consensus 70 ~~~~~~~I~~~~~~~~~dllviG~~~----~~~~~~~----~~Gs~~~~v~~~a~~-~~v~v~ 123 (124)
T cd01987 70 GDDVAEAIVEFAREHNVTQIVVGKSR----RSRWREL----FRGSLVDRLLRRAGN-IDVHIV 123 (124)
T ss_pred CCcHHHHHHHHHHHcCCCEEEeCCCC----CchHHHH----hcccHHHHHHHhCCC-CeEEEe
Confidence 23343433222222339999999998 2333332 467777777765311 577775
No 49
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.84 E-value=9.3e-05 Score=80.55 Aligned_cols=109 Identities=12% Similarity=0.053 Sum_probs=75.1
Q ss_pred ceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 004372 413 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 492 (758)
Q Consensus 413 elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~ 492 (758)
-.|||+|+++++++..+++.+..+++. .+...+++++|+++........ ... ....+++++..+
T Consensus 5 ykkILVavDGSe~S~~Al~~AielA~~-~g~~AeL~lL~Vv~~~~~~~~~---~~~------------~~~~eelle~~~ 68 (357)
T PRK12652 5 ANRLLVPVADSVTVRQTVAYAVESAEE-AAETPTVHLVAAASGRAVDPEG---QDE------------LAAAEELLERVE 68 (357)
T ss_pred cCeEEEEeCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEEEecCcccccch---hHH------------HHHHHHHHHHHH
Confidence 358999999999999999999999854 2236899999999743211110 000 022344555555
Q ss_pred Hhhhc------cceEEEEeEEec-----CCCchHHHHHHHHHhcCccEEEecCCcc
Q 004372 493 AFQQL------SRVSVRPMTAIS-----SMSDMHEDICTTAESKRAAIIILPFHKH 537 (758)
Q Consensus 493 ~~~~~------~~v~v~~~~~vs-----~~~~m~~dI~~~A~e~~adlIIlp~h~~ 537 (758)
+..+. .++++++.+... ...++++.|+++|+|+++|+|||+-.-+
T Consensus 69 ~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~ 124 (357)
T PRK12652 69 VWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYN 124 (357)
T ss_pred HHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCC
Confidence 44432 478888777652 1149999999999999999999996543
No 50
>PRK09982 universal stress protein UspD; Provisional
Probab=97.83 E-value=9e-05 Score=70.28 Aligned_cols=130 Identities=14% Similarity=0.119 Sum_probs=74.5
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccc-cC-CcCc---cccHHHHHHHHHhhcCCCCc
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVS-VD-MAGN---ASMDEEVLSEFKLKTSRNGS 660 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~-~~-~~~~---~~~d~~~~~e~~~~~~~~~~ 660 (758)
.++|++++.|.++.+.|++.|.++|+.++.+++++++++.......... .. ++.+ ++.-++.+++.+.+.. ...
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQ-WPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhcC-CCc
Confidence 4689999999999999999999999999999999999854221100000 00 0111 1112234555554432 122
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 661 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 661 v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
+.+ ....+++.+++....+..+.||+|+|+++ +|+++| +| +.+-+.. .+ .+||||.
T Consensus 82 ~~~-~v~~G~p~~~I~~~A~~~~aDLIVmG~~~-----~~~~~~-----~~-va~~V~~---~s~~pVLvv~ 138 (142)
T PRK09982 82 TKL-RIERGEMPETLLEIMQKEQCDLLVCGHHH-----SFINRL-----MP-AYRGMIN---KMSADLLIVP 138 (142)
T ss_pred ceE-EEEecCHHHHHHHHHHHcCCCEEEEeCCh-----hHHHHH-----HH-HHHHHHh---cCCCCEEEec
Confidence 222 22335555544444333349999999753 445544 23 3333332 23 6788773
No 51
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.73 E-value=0.0045 Score=64.92 Aligned_cols=169 Identities=16% Similarity=0.189 Sum_probs=109.2
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCchhHHHHHHHHHHhhccHHHHHHHH
Q 004372 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETIS-KGVDSTSFLVFMGVALSITAFPVLARIL 179 (758)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~l~l~~~ls~Ts~~vv~~iL 179 (758)
+..++|-.|-++|++...+..||...+.+.-+++..+++..+..++...-- .+.......+.+-.+++.+....-..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 456889999999999999999999888888888888888877777654210 0001224566677777777777777777
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHh
Q 004372 180 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITD--AIGIHAMFGAFVVGVL 257 (758)
Q Consensus 180 ~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~la~--~~g~~~~lgaf~aGL~ 257 (758)
.|.+ -++|.|-.. ..-++|.=.+.++++-. +.+++ +.-+=+.+=+++.|++
T Consensus 131 ~~yG-d~~D~gA~~--i~sl~~GPf~tMl~LG~------------------------sG~a~ip~~~lv~~llP~iiG~i 183 (314)
T PF03812_consen 131 GQYG-DEEDVGAFS--ILSLNDGPFFTMLALGA------------------------SGLANIPWMSLVAALLPIIIGMI 183 (314)
T ss_pred HHhC-CHHHhHHHH--HHHhhhhHHHHHHHHhh------------------------ccccCCCHHHHHHHHHHHHHHHH
Confidence 8887 355555433 33345543333332222 11111 1111134458899999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchh
Q 004372 258 VPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL 300 (758)
Q Consensus 258 l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~ 300 (758)
+.|-. +++.+-+.+- ..+++|+|-...|..+|+..+...
T Consensus 184 LGNLD---~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 184 LGNLD---PDFRKFLAPG-VPILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred HhcCC---HHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHHHh
Confidence 98743 3444444444 378999999999999999888754
No 52
>PRK15456 universal stress protein UspG; Provisional
Probab=97.64 E-value=0.00054 Score=64.78 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=76.2
Q ss_pred ceEEEEeccCCc--ChHHHHHHHHHHhhCCCeEEEEEEEeecccccCccc-ccC-CcCc---cccHHHHHHHHHhhcCCC
Q 004372 586 SYTITVLFFGGR--DDREALACGARMAEHPGISFIVIRFLLAADAIGNTV-SVD-MAGN---ASMDEEVLSEFKLKTSRN 658 (758)
Q Consensus 586 ~~~I~v~f~GG~--ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~-~~~-~~~~---~~~d~~~~~e~~~~~~~~ 658 (758)
.+||++++.|.+ ..+.|+++|.++|+.. .+++++++.+......... ... ++.+ ++.-++.++++.++...
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTI- 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhCC-
Confidence 368999999984 7899999999999875 5899999986432110000 000 0111 12222445555544321
Q ss_pred CceEEEEE-EecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 659 GSVRYEER-LVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 659 ~~v~y~e~-~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
+.+.+... ..+++.+.+....+..+.||+|+|+++. |+.+| =+|-..+-++.. + ++||||.
T Consensus 80 ~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~-----~~~~~----llGS~a~~v~~~---a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNP-----SISTH----LLGSNASSVIRH---ANLPVLVVR 142 (142)
T ss_pred CCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCC-----Cccce----ecCccHHHHHHc---CCCCEEEeC
Confidence 22222211 2234444332222222399999999972 23222 379999988863 4 7999983
No 53
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.64 E-value=9.6e-05 Score=70.06 Aligned_cols=129 Identities=12% Similarity=0.070 Sum_probs=72.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcc--cccCCcCccccHH---HHHHHHHhhcCCCCc
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT--VSVDMAGNASMDE---EVLSEFKLKTSRNGS 660 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~--~~~~~~~~~~~d~---~~~~e~~~~~~~~~~ 660 (758)
.+||+++..|.++.+.||.+|..+|+..+.+++++++..+....... ....++.+++..+ +.++++..+. .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 46999999999999999999999999999999999985321110000 0000011111111 2233333221 1
Q ss_pred eEEEEEE--ecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEee
Q 004372 661 VRYEERL--VRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQ 732 (758)
Q Consensus 661 v~y~e~~--v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq 732 (758)
+...+.. .+++.+.+....+..++||+|+|+++ . ++. .+|-..+-+.. .+ ++||||..
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~----~-~~~------~lgSva~~v~~---~a~~pVLvv~~ 139 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQ----D-FWS------KLMSSARQLIN---TVHVDMLIVPL 139 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcc----c-HHH------HHHHHHHHHHh---hCCCCEEEecC
Confidence 2222233 34454433222222339999999997 1 211 15555555554 23 79999985
No 54
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.51 E-value=0.0006 Score=62.23 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=73.3
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEE
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 667 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~ 667 (758)
+|++++.+++..+.++.+|.++|+..+.+++++++.+....... ...+.+....++.+++++.... ...+....+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~ 76 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA---ELAELLEEEARALLEALREALA-EAGVKVETVV 76 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch---hHHHHHHHHHHHHHHHHHHHHh-cCCCceEEEE
Confidence 58899999999999999999999999999999999865432100 0001112223466667666531 1223333333
Q ss_pred ecChHHHHHHHHhcc--CCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEE
Q 004372 668 VRNTAETIAVIREVS--RCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 730 (758)
Q Consensus 668 v~~~~e~~~~i~~~~--~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvv 730 (758)
.... ....+++... ++|++|+|.++. ..+.+ --.|.+.+-|... + .+||+|
T Consensus 77 ~~~~-~~~~i~~~~~~~~~dlvvig~~~~----~~~~~----~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 77 LEGD-PAEAILEAAEELGADLIVMGSRGR----SGLRR----LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred ecCC-CHHHHHHHHHHcCCCEEEEcCCCC----Cccce----eeeccHHHHHHhC---CCCCEEeC
Confidence 2222 1223333222 289999999871 11111 1356666666643 3 466553
No 55
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.50 E-value=0.0061 Score=63.55 Aligned_cols=257 Identities=13% Similarity=0.137 Sum_probs=137.3
Q ss_pred HHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHhhccHHHHHHHH
Q 004372 101 LIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARIL 179 (758)
Q Consensus 101 l~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL 179 (758)
+..++|-.|-++|++...+..||...+.+.-+.+..+++.++..++...- ..+.......+.+-.+++.+--..-..+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 44588999999999998888888877777777777777777777665321 00001123455566666666666666777
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHh
Q 004372 180 AELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITD--AIGIHAMFGAFVVGVL 257 (758)
Q Consensus 180 ~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~la~--~~g~~~~lgaf~aGL~ 257 (758)
.|.| -++|.|-..+ ..++|.=.+.++++ +.+.+++ ..-+=+.+=+++.|++
T Consensus 131 ~qyG-d~~D~gA~~i--~sl~~GPf~TMi~L------------------------G~sGlA~ip~~~lv~~ilPlliG~i 183 (314)
T TIGR00793 131 QQYG-TKEEAGAFVL--MSLESGPLMTMVIL------------------------GTAGIASFEPHVFVGAVLPFLVGFA 183 (314)
T ss_pred HHcC-CHhhhhhhhh--hhhccCcHHHHHHH------------------------hhccCCCCCHHHHHHHHHHHHHHHH
Confidence 7777 3555654433 23444433322222 1222211 1111134457899999
Q ss_pred cCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHH
Q 004372 258 VPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSF-KVPLREAL 336 (758)
Q Consensus 258 l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~-~~~~~~~~ 336 (758)
+.|-. +++.+-+.+-. ..++|+|-...|..+|+..+...-..++++.+. ..+.--...++.-++. |-+..-+.
T Consensus 184 lGNLD---~~~r~fl~~~~-~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~--v~~vtG~~~~~~dr~~~g~~g~aG~ 257 (314)
T TIGR00793 184 LGNLD---PELRDFFSKAV-QTLIPFFAFALGNTIDLGVIIQTGLLGILLGVS--VIILTGIPLILADKFIGGGDGTAGI 257 (314)
T ss_pred HhcCC---HHHHHHhccCC-CeeeehhhhhhcCCCCHHHHHHhCcchHHHHHH--HHHHHhHHHHHHHHHhcCCCCchhh
Confidence 98744 34444444443 688999999999999998876432222222221 1122233345555555 32322233
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHH-HHcch
Q 004372 337 ALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVM-AVYKP 391 (758)
Q Consensus 337 ~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~-~l~~~ 391 (758)
..+-.-..--....+++..-.+.... .+.-+..+.++++.|.+..|++. |++|+
T Consensus 258 A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavivTaiL~Pilta~~~kr 312 (314)
T TIGR00793 258 AASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVIVTSLLVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 32221111111122222222222221 24455556666677777777665 54443
No 56
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=97.23 E-value=0.43 Score=51.42 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcccCCC--hhHH-HHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHh
Q 004372 33 AILQICLVILLTRGLAFILRPLRQP--RVIA-EITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (758)
Q Consensus 33 ll~~~~lil~~~~~~~~ll~~l~~P--~iv~-~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~G 109 (758)
...|.++.+.++...++++..+++| -..| -+++|++.+-...- ...-..+..+|.+.+=-.+|
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~--------------l~~P~~l~~~~q~ilG~~ig 72 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT--------------LPLPRGLFKAGQVILGIMIG 72 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc--------------ccCChHHHHHHHHHHHHHHh
Confidence 3667788888888999999998875 3455 56667766621111 11114556677777777899
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChh
Q 004372 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADV 189 (758)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~ 189 (758)
..+..+.+... ++.+.+.....+++...+...+|++.+.. .++. ..+++-..--..+. ...+-.|.| .|.+.
T Consensus 73 ~~~t~s~l~~l-~~~w~~~~~v~~~tl~~s~l~g~ll~r~~--~~~~-~Ta~~gs~PGgas~---m~~iA~d~g-Ad~~~ 144 (352)
T COG3180 73 ASLTPSVLDTL-KSNWPIVLVVLLLTLLSSILLGWLLKRFS--ILPG-NTAFLGSSPGGASA---MVSIAQDYG-ADLRL 144 (352)
T ss_pred hhcCHHHHHHH-HHcccHHHHHHHHHHHHHHHHHHHHHHhc--CCCc-chhhHhcCCchHHH---HHHHHHHhC-CChhH
Confidence 99988877543 34444555556666667777777776543 1211 12222111112222 222224555 45554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC----------C-CCCchHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHH
Q 004372 190 GRMAMSAAAVNDVAAWILLALAVALSGS----------G-EPVEETYVCATLAAVLAAGFITDAIGI--HAMFGAFVVGV 256 (758)
Q Consensus 190 g~lals~a~i~D~~~~~ll~~~~~~~~~----------~-~~~~e~~~~~~l~~~l~~~~la~~~g~--~~~lgaf~aGL 256 (758)
--+..+.=++-=...+++++ -..... . .+.....+.+.+...++.+.+...+++ ..++|+++.|.
T Consensus 145 VAl~Q~lRvl~Vvl~vplv~--~~~~~~~a~~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a 222 (352)
T COG3180 145 VALMQYLRVLFVVLLAPLVS--RLFVGDGANGSGTPEIWLPPVDWLILLLLILAALLGGLLGKLLRFPAPTLLGPLLLGA 222 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHhcCCCCCCCCCccccCchhhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 44444332221111111111 111111 1 111222255666677777788888877 47899999999
Q ss_pred hcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 004372 257 LVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFVVSLSFKVPLREA 335 (758)
Q Consensus 257 ~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~ 335 (758)
.+.-.....-++-+-+. .+-.-+.-..+|.++|-..+.... .....++.++..++.-....++.+++.++++.++
T Consensus 223 ~v~~~~~~~~~lP~wl~----~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta 298 (352)
T COG3180 223 IVHFGGGITIQLPAWLL----AVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAAGMAGLLSWLTGIDLNTA 298 (352)
T ss_pred HhhcccceeeeCCHHHH----HHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 98743322222211111 222234557889999866554322 2222334444555555666777788888888775
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q 004372 336 LALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 336 ~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
+. ..+|.|.-++.....+.+
T Consensus 299 ~L---a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 299 YL---ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred HH---HcCCCcHHHHHHHHHHcC
Confidence 43 347888877777665544
No 57
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=97.18 E-value=0.062 Score=59.13 Aligned_cols=247 Identities=18% Similarity=0.227 Sum_probs=145.4
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH-----hhccHHHHHHHHHhccc
Q 004372 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-----SITAFPVLARILAELKL 184 (758)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l-----s~Ts~~vv~~iL~elkl 184 (758)
+.||.+.+.|...|-+...+.+.+..++++..+..+++..+. . ..+.++.=. ..-+.|...-.-+-.+.
T Consensus 109 Lgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~----~--~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 109 LGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK----D--AIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----H--HHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 578999999988888888888888777777777777664321 1 112221111 12222322211122333
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CC-----------CCchHHHHHHHHHHH----HH
Q 004372 185 LTADVGRMAMSAAAVNDVAAWILLALAVALSGS-------------GE-----------PVEETYVCATLAAVL----AA 236 (758)
Q Consensus 185 l~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~-------------~~-----------~~~e~~~~~~l~~~l----~~ 236 (758)
-..+.-..++.+.++..+++++.-.++--+... .+ +.+-..+..-+.+++ ..
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G 262 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILG 262 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 344555566778888888888766655443221 11 111112222222222 22
Q ss_pred HHHHHHhchhHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHHHHhHHHHHHHhccc-ccchhhchhhhHHHHHHHHHH
Q 004372 237 GFITDAIGIHAMFGAFVVGVLVPKEG---PFANALVEKVEDLVSGIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVILT 312 (758)
Q Consensus 237 ~~la~~~g~~~~lgaf~aGL~l~~~~---~~~~~l~~ki~~~~~~~~lPlfF~~~G~~-~dl~~l~~~~~~~~~~~ii~~ 312 (758)
..+...+++|...-..++=.++.-.. +.-++=.++...|...-+.+...+.+|+. +|+.++....++.. +++++.
T Consensus 263 ~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~-vv~~~~ 341 (414)
T PF03390_consen 263 VLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQY-VVIVLA 341 (414)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHH-HHHHHH
Confidence 34555678887766655555554222 22233334566666677777788888988 99988876555553 455566
Q ss_pred HHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHH-HHHHHHHHhhccCCccc
Q 004372 313 ACLGKIVGTFVVSLSFKVPLRE-ALALGILMNTKG-LVELIVLNIGKDRKVLN 363 (758)
Q Consensus 313 ~~~~K~~~~~~~~~~~~~~~~~-~~~lgl~l~~kG-~~~l~~~~~~~~~~~i~ 363 (758)
.+++-.++.++.+++.|+-+-| ++..|+.++.+| .-++.++..+...+++.
T Consensus 342 ~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 342 TVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 6777788899999999986666 555676776665 45666766666666554
No 58
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.09 E-value=0.0025 Score=69.59 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=65.8
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCC-----
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR----- 657 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~----- 657 (758)
..+||++++.|.+..+.|+++|..+|+.. +.+++++++++..... . ..+...+..++.+++.++....
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~-~----~~~~~~~~~eelle~~~~~~~~~l~~~ 78 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVD-P----EGQDELAAAEELLERVEVWATEDLGDD 78 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccc-c----chhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45799999999999999999999999884 6999999999743221 0 0001111122334444332211
Q ss_pred CCceEEEEEEe---------cChHHHHHHHHhccCCCEEEEccCC
Q 004372 658 NGSVRYEERLV---------RNTAETIAVIREVSRCNLLLVGRMP 693 (758)
Q Consensus 658 ~~~v~y~e~~v---------~~~~e~~~~i~~~~~~DL~iVGr~~ 693 (758)
...+.+..+++ ++..|++....+..++||+|+|..-
T Consensus 79 ~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~ 123 (357)
T PRK12652 79 ASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEY 123 (357)
T ss_pred cCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCC
Confidence 13455555554 3666655444443449999999986
No 59
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=97.05 E-value=0.56 Score=50.73 Aligned_cols=250 Identities=15% Similarity=0.118 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHH
Q 004372 96 LANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVL 175 (758)
Q Consensus 96 l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv 175 (758)
+.+.+.+.+=-.+|..++++.+.+...... ......+..++++.+.++++.+..+.+. ..+++-+.--..+. .
T Consensus 26 ~r~~~q~ilG~~iG~~~t~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~r~~~~d~---~TA~~~~~PGg~s~---m 98 (318)
T PF05145_consen 26 LRNAGQAILGVSIGSSFTPEVLAQLASWWP-PMLLLLVVTLLLSLVGAWLLRRISGLDR---ATAFFASMPGGLSE---M 98 (318)
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCh---hHHHHHcCCccHHH---H
Confidence 445666666678888888888776654433 3333444455566666666665432221 22322222222222 2
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-------CCCCchHHHHHHHHHHHHHHHHHHHhch-
Q 004372 176 ARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSG--S-------GEPVEETYVCATLAAVLAAGFITDAIGI- 245 (758)
Q Consensus 176 ~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~--~-------~~~~~e~~~~~~l~~~l~~~~la~~~g~- 245 (758)
.-+-+|.| .+++.-.+....=++-=+..++++.....-.. . ..+.+-..+.+.+..++..+++.+.+++
T Consensus 99 ~~la~~~g-ad~~~Va~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~g~~l~~~l~iP 177 (318)
T PF05145_consen 99 VALAEEYG-ADTRRVALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWLWLALLALAALAGGLLARRLRIP 177 (318)
T ss_pred HHHHHHcC-CChhhhHHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 22224555 45544444433333322222322221111110 0 1111223345556677788889999888
Q ss_pred -hHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhh-hHHHHHHHHHHHHHHHHHHHHH
Q 004372 246 -HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-SWGLLALVILTACLGKIVGTFV 323 (758)
Q Consensus 246 -~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~~ 323 (758)
..++|+++.+.++.-.....-.+-+.+. .+..-+.-..+|.+++...+.... .+...+...+..+..-.+..++
T Consensus 178 a~~llGpml~~a~~~~~~~~~~~~P~~l~----~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~ 253 (318)
T PF05145_consen 178 APWLLGPMLVSAILNLFGGPSFSLPPWLV----NAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWL 253 (318)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999888877632111111111111 222224457789998876665332 3333444555555566777788
Q ss_pred HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 004372 324 VSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRK 360 (758)
Q Consensus 324 ~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~ 360 (758)
..++.++++.+++ +.+.|-|.-++.+.....+.+
T Consensus 254 l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 254 LSRLTGIDFLTAL---LATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCC
Confidence 8888999887754 345788988888877666544
No 60
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.98 E-value=0.17 Score=53.99 Aligned_cols=256 Identities=18% Similarity=0.171 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccCchhHHhccch---hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH-
Q 004372 92 VLDTLANLGLIFFMFLVGLELDPKSLRQTGKK---ALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL- 167 (758)
Q Consensus 92 ~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~---~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l- 167 (758)
.++..-...+.++||..|+.+..+++++..++ .......++++--++++.++..+. . ..-+..|..+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~----l-----~~~l~~Gl~ll 105 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP----L-----PPELAVGLLLL 105 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC----C-----CHHHHHhHHhe
Confidence 34445578899999999999999999865544 333344444444444544444432 1 1234444444
Q ss_pred ----hhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHHHHHHHHHH
Q 004372 168 ----SITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS-GEPVEETYVCATLAAVLAAGFITDA 242 (758)
Q Consensus 168 ----s~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~-~~~~~e~~~~~~l~~~l~~~~la~~ 242 (758)
+.|+. .+...+. +.++ -++++.+.++.+++.++.-+...+..+ +-+.+.......+.
T Consensus 106 ~~~Pggv~S-~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~----------- 167 (319)
T COG0385 106 GCCPGGVAS-NAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSIL----------- 167 (319)
T ss_pred eeCCCchhH-HHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH-----------
Confidence 23333 3333332 2222 255666677777777666555443322 11211111111111
Q ss_pred hchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHH-----HHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHH
Q 004372 243 IGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVS-----GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGK 317 (758)
Q Consensus 243 ~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~-----~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K 317 (758)
-.++-+|++|+++.+..| +..++.++... .+++-+|-.+.+..-+. .. ... .+.+.+++-...-
T Consensus 168 ---~~vllP~~LG~~~r~~~~---~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~---~~-~~~-~v~~~v~~~n~lg 236 (319)
T COG0385 168 ---LQVLLPFVLGQLLRPLLP---KWVERLKKALPPVSVLSILLIVYAAFSAAVENG---IW-SGL-LIFVAVILHNLLG 236 (319)
T ss_pred ---HHHHHHHHHHHHHHHHHH---HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhh---hH-HHH-HHHHHHHHHHHHH
Confidence 124567888888864333 33333333221 23444444444333222 21 112 2222223333344
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHH-HHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 004372 318 IVGTFVVSLSFKVPLREALALGILMNTKGL-VELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 390 (758)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~-~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~ 390 (758)
+..+|..++.+|++..|...+.+--+.|-. .+..+++..... +...-...+..+...+ +..++...|+
T Consensus 237 ~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~lg~alA~~f~~~----~~~alP~aif~~~q~~-~~a~la~~~~ 305 (319)
T COG0385 237 LLLGYFGARLLGFDKADEITIAIEGGMQNLGLGAALAAAFFGN----PLMALPLAIFSVWQNM-SGAVLAGLYA 305 (319)
T ss_pred HHHHHHHHHHhCCChhheeeEEEeeccccHHHHHHHHHhcCCC----chhHhHHHHHHHHHHH-HHHHHHHHHH
Confidence 777888999999999998877664443432 233444432222 3333333344445444 4444444443
No 61
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.96 E-value=0.094 Score=56.58 Aligned_cols=195 Identities=12% Similarity=0.150 Sum_probs=108.6
Q ss_pred HHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCchhHHHHHHHHHHhhccHHHHHHHHHh
Q 004372 103 FFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI-SKGVDSTSFLVFMGVALSITAFPVLARILAE 181 (758)
Q Consensus 103 ~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~e 181 (758)
.++|-.|-.+|++...+..||...+.+.-+.+..+++.++..++.... ..+.......+....++..+...+-...+.+
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~ 134 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQ 134 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 688999999999998888888887877777777777776666554311 0000112344555556666666666666666
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHhcC
Q 004372 182 LKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDA--IGIHAMFGAFVVGVLVP 259 (758)
Q Consensus 182 lkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~la~~--~g~~~~lgaf~aGL~l~ 259 (758)
.+. +.+.|...+-+ ++|.--..+ .++..+.++++ ...-+.+.+++.|..+.
T Consensus 135 ~g~-~~d~ga~i~ls--l~~Gp~~tM------------------------~lL~aagla~~p~~~li~allplliG~~lg 187 (326)
T PRK05274 135 YGT-KEDAGAFVLMS--LEDGPFMTM------------------------LALGAAGLASFPPPALVGAVLPLLVGFILG 187 (326)
T ss_pred hCC-CCCcchHHHHH--HhhhHHHHH------------------------HHHHhhCcccCCCchhhHHHHHHHHHHHHH
Confidence 653 34555443322 233321111 11112222221 00112226888888888
Q ss_pred CCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004372 260 KEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV 330 (758)
Q Consensus 260 ~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~ 330 (758)
| +.+.+.+...+- -.+++|++-...|.++|+..+... .+.-. ++.+..++......+...++++.
T Consensus 188 n---l~~~l~~~~~~G-i~~lLp~~~~~lG~~l~lq~i~~~-G~~Gi-lL~~~~~~~t~~~~~~~~Rl~~~ 252 (326)
T PRK05274 188 N---LDPELRQFLGKA-VPVLIPFFAFALGNGIDLGTIITA-GLSGI-LLGVAVVAVTGIPLYLADRLIGG 252 (326)
T ss_pred h---HHHhhHHHhcCC-cEEEHHHHHHHHhcceeHhHHHhc-CCcch-hhhhhHhhccchhhHhHhheeec
Confidence 5 333444444443 367999999999999999877542 22211 22223333444445555577754
No 62
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.92 E-value=0.45 Score=50.74 Aligned_cols=268 Identities=19% Similarity=0.179 Sum_probs=131.7
Q ss_pred ChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHH
Q 004372 57 PRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPF 136 (758)
Q Consensus 57 P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~ 136 (758)
+-+.-.+++|+.+|-..-+... ..+ .-+...++.--.+|+++.|+=.=+++|.+.+++..++.= .-+.+...-+
T Consensus 18 ~wv~l~i~~Gi~lG~~~p~~~~-~l~----~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k-~L~lsL~~Nw 91 (342)
T COG0798 18 LWVFLAIAIGILLGVHFPGLAQ-LLG----KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK-PLILSLFVNW 91 (342)
T ss_pred HHHHHHHHHHHHHHhcccchhh-hcc----cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcch-HHHHHHHHHH
Confidence 3356668888888855433111 011 012223445566788888888889999999987665522 2222333333
Q ss_pred H----HHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 137 A----LGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (758)
Q Consensus 137 ~----~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~ 212 (758)
+ +.+++++++.. +.+ -...|.++---+ |+++-++.--++.+.+. ..++..-.+||++.+++++...
T Consensus 92 ii~P~lm~~la~~fl~----~~p----ey~~GlILlglA-pC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~ 161 (342)
T COG0798 92 IIGPLLMFALAWFFLP----DEP----EYRAGLILLGLA-PCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLYAPLG 161 (342)
T ss_pred HHHHHHHHHHHHHHhC----CCH----HHHHHHHHHHhh-hhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHHHHHH
Confidence 3 33334444432 111 122333322222 33333333334444433 3455566789999988886554
Q ss_pred HHhcC----CCCCchH--HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHHHHHhHHHHH
Q 004372 213 ALSGS----GEPVEET--YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP-FANALVEKVEDLVSGIFLPLYF 285 (758)
Q Consensus 213 ~~~~~----~~~~~e~--~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~-~~~~l~~ki~~~~~~~~lPlfF 285 (758)
...-+ .-+..+. .+.+.+...++.+.++......- .+.+ +-++...+++++.---++-..+
T Consensus 162 ~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~------------kg~~~~~~~f~p~ispi~ligLl~Tiv 229 (342)
T COG0798 162 KFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK------------KGREWYESRFLPKISPIALIGLLLTIV 229 (342)
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------ccchHHHHHHHhhcChHHHHHHHHHHH
Confidence 43222 1111111 12223344444444444433220 0111 3445555555543222222223
Q ss_pred HHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 004372 286 VSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 354 (758)
Q Consensus 286 ~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~ 354 (758)
+....+-|.- ...+.....+++-.+.-+...+..+++.++..|+|.+++..+++....+ .+|++++.
T Consensus 230 liF~~qg~~I-v~~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN-nfeLAiAv 296 (342)
T COG0798 230 LIFAFQGEQI-VEQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN-NFELAIAV 296 (342)
T ss_pred HHHHHhHHHH-HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc-cHHHHHHH
Confidence 3334443321 1111233444444455566677788889999999999998887754333 24554443
No 63
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.87 E-value=0.098 Score=55.99 Aligned_cols=276 Identities=18% Similarity=0.250 Sum_probs=132.6
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHh------hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchh
Q 004372 84 VFPPKSQTVLDTLANLGLIFFMFLVG------LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDST 157 (758)
Q Consensus 84 ~fp~~~~~~l~~l~~lgl~~~lF~~G------le~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 157 (758)
++|.+..+....+.+=.=.+.+|.++ |.||.+.+-|...+-+...+.+++...+.|.++...++..+....-.
T Consensus 94 llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~- 172 (438)
T COG3493 94 LLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMY- 172 (438)
T ss_pred cCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeee-
Confidence 34444433333332222233555554 35777777777777666666666666666666666554322110000
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------C-------
Q 004372 158 SFLVFMGVALSITAFPVLARILAE-LKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS-----------G------- 218 (758)
Q Consensus 158 ~~~l~l~~~ls~Ts~~vv~~iL~e-lkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~-----------~------- 218 (758)
...-.++--...-+.| .+.+-++ .+.-..+.-..++.+..+..+++++.-+++--+... +
T Consensus 173 ~vlPIM~GG~GaGavP-LS~iYs~itg~s~~~~~s~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~ 251 (438)
T COG3493 173 VVLPIMGGGMGAGAVP-LSEIYSSITGGSQEEYFSQLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEAT 251 (438)
T ss_pred EEeeeccCCCCCCccc-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchh
Confidence 0000000000111111 1111111 233344555667778888888888766655433211 0
Q ss_pred -CC--------CchHHHHHHHHHHH--HHHHHHHHhchhHHHHHHH-HHHhcC--CC-CChhHHHHHHHHHHHH-HHhHH
Q 004372 219 -EP--------VEETYVCATLAAVL--AAGFITDAIGIHAMFGAFV-VGVLVP--KE-GPFANALVEKVEDLVS-GIFLP 282 (758)
Q Consensus 219 -~~--------~~e~~~~~~l~~~l--~~~~la~~~g~~~~lgaf~-aGL~l~--~~-~~~~~~l~~ki~~~~~-~~~lP 282 (758)
+. .++.-.-.+++..+ ..+.+.+.+++..-...++ .-.++. |- |+.-++=..++..|.+ .+.-|
T Consensus 252 ~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~~ 331 (438)
T COG3493 252 EEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAANLVPKEIEEGAKQLSQFFSKNLTWP 331 (438)
T ss_pred hhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHHH
Confidence 00 01111222233222 3334556676653221111 111111 11 1122222234444433 34444
Q ss_pred HHHHHhccc-ccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHHHH-HHHHHHHhhccC
Q 004372 283 LYFVSSGLK-TNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREAL-ALGILMNTKGL-VELIVLNIGKDR 359 (758)
Q Consensus 283 lfF~~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~-~lgl~l~~kG~-~~l~~~~~~~~~ 359 (758)
+ .+.+|.. +|+..+.+..+|..+ ++.+..+++-..+.++.+++.++-+-|+- .-|+.|+.+|. -++.++..+...
T Consensus 332 L-m~giGv~ytdl~ev~~alt~~~v-ii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM 409 (438)
T COG3493 332 L-MAGIGVAYTDLNEVAAALTWQNV-IIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADRM 409 (438)
T ss_pred H-HHhhhhccccHHHHHHHhchhHH-HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcchh
Confidence 4 4455665 888877765566543 44455566778888999999997665554 55688888774 456666655555
Q ss_pred Cccc
Q 004372 360 KVLN 363 (758)
Q Consensus 360 ~~i~ 363 (758)
++++
T Consensus 410 ~Lmp 413 (438)
T COG3493 410 ELMP 413 (438)
T ss_pred cccc
Confidence 5554
No 64
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.84 E-value=0.35 Score=52.23 Aligned_cols=220 Identities=18% Similarity=0.239 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHhhccCchhHHhccchh---HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhc
Q 004372 94 DTLANLGLIFFMFLVGLELDPKSLRQTGKKA---LGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSIT 170 (758)
Q Consensus 94 ~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~---~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~T 170 (758)
+.....++..++|..|+.++.+++++..++. ...-...+++.-++++.+........ ...+..|......
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~-------~~~l~~Gl~~~~~ 102 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL-------PPELALGLLILAC 102 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC-------CHHHHHHHHHHhh
Confidence 4667788888899999999999998755443 22222333333333444444332211 1123333333111
Q ss_pred -----cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CchH----HHHHHHHHHHHHHHH
Q 004372 171 -----AFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEP--VEET----YVCATLAAVLAAGFI 239 (758)
Q Consensus 171 -----s~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~~~~--~~e~----~~~~~l~~~l~~~~l 239 (758)
+..++ ++.. .+.+. ..++..+.++.++++++.-+...+..++.. .+.. .+...
T Consensus 103 lPtTv~S~v~---~T~~--AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~~~~~~L~~~---------- 166 (313)
T PF13593_consen 103 LPTTVSSSVV---LTRL--AGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYASVLIKLVLT---------- 166 (313)
T ss_pred CCchhhHHHH---HHHH--cCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHHHHHHHHHHH----------
Confidence 22222 2222 22222 356667778888888777665554432111 1111 12222
Q ss_pred HHHhchhHHHHHHHHHHhcCCCC-Chh---HHHHHHHHHHHHHHhHHHHHHHhcc-cccc-hhhchhhhHHHHHHHHHHH
Q 004372 240 TDAIGIHAMFGAFVVGVLVPKEG-PFA---NALVEKVEDLVSGIFLPLYFVSSGL-KTNI-ATIQGLQSWGLLALVILTA 313 (758)
Q Consensus 240 a~~~g~~~~lgaf~aGL~l~~~~-~~~---~~l~~ki~~~~~~~~lPlfF~~~G~-~~dl-~~l~~~~~~~~~~~ii~~~ 313 (758)
++.|+++|-.+.+.- +.. ++...+++.. .+.+-+|..++.. .-+. ..... ........+.+..
T Consensus 167 --------vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~--~ll~iv~~~fs~~~~~~~~~~~~~-~~~~~~~~~~~~l 235 (313)
T PF13593_consen 167 --------VLLPLVLGQLLRRWVPKWVARHKKPLSLLSQL--ALLLIVYSAFSSAFAQGAWHSVSA-AALALIVAVSLLL 235 (313)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhchhhhCCH-HHHHHHHHHHHHH
Confidence 334555555554211 111 2223333333 2333344444333 1111 11211 1222223333334
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 004372 314 CLGKIVGTFVVSLSFKVPLREALALGILMNTKGL 347 (758)
Q Consensus 314 ~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~ 347 (758)
.+.-+..++..++.++++.+|...+.+.-++|..
T Consensus 236 ~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~Ksl 269 (313)
T PF13593_consen 236 LLVVLVLGWLAARLLGFSRPDRIAVLFCGSQKSL 269 (313)
T ss_pred HHHHHHHHHHHHhhcCCChhhEEEEEEEcCcCcc
Confidence 4444556678888899999998887776666664
No 65
>PRK03818 putative transporter; Validated
Probab=96.73 E-value=1.3 Score=51.73 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHH---hccchhHHHHHHHHHHH
Q 004372 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLR---QTGKKALGIAIAGISLP 135 (758)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~---~~~~~~~~i~~~~~~i~ 135 (758)
+.|-+++|+++|-.. . . +.. .-+......+.++|+.+|+|.+|++.-++.+. +.+.+...+++.-.+++
T Consensus 33 ~~g~L~~gl~~G~~~--~--~-~~~---~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~ 104 (552)
T PRK03818 33 IGGVLFGGIIVGHFV--S--Q-FGL---TLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILG 104 (552)
T ss_pred cHHHHHHHHHHhccc--c--c-cCc---ccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 478888999988521 0 0 010 01344567799999999999999999876654 44555556666666666
Q ss_pred HHHHHHHHHH
Q 004372 136 FALGIGSSFL 145 (758)
Q Consensus 136 ~~~~~~~~~~ 145 (758)
.++++.+.++
T Consensus 105 ~~~~~~~~~~ 114 (552)
T PRK03818 105 GLVTAILHKL 114 (552)
T ss_pred HHHHHHHHHH
Confidence 6665555433
No 66
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=96.73 E-value=0.84 Score=50.41 Aligned_cols=229 Identities=19% Similarity=0.272 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHH---HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HH--hhc
Q 004372 97 ANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGI---SLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-AL--SIT 170 (758)
Q Consensus 97 ~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~---~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~l--s~T 170 (758)
.+.-++.+.=.+|+..+.+.+||.+|+......... .+..++|..++.++. .++ ...+..+. .+ .--
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~g----l~p---~~Gll~Gsi~f~GGhG 138 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLG----LDP---LFGLLAGSIGFTGGHG 138 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCc---hHHHHhccccccCCcc
Confidence 333334444467889999999998887765554433 233445544444432 111 12222221 11 111
Q ss_pred cHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHH--hcC------------------------CCCCch
Q 004372 171 AFPVLARILAEL-KLLTADVGRMAMSAAAVNDVAAWILLALAVAL--SGS------------------------GEPVEE 223 (758)
Q Consensus 171 s~~vv~~iL~el-kll~s~~g~lals~a~i~D~~~~~ll~~~~~~--~~~------------------------~~~~~e 223 (758)
......+.++|+ +. .....+++++|-+.=+.+.++=..+... ... ++....
T Consensus 139 TAaa~g~~fe~~~G~--~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 216 (368)
T PF03616_consen 139 TAAAFGPTFEELYGW--EGATSVGMAAATFGLVVGGLIGGPIANWLIRKGKLKPKKEPDELKEYLRKGEERPSAGRPITS 216 (368)
T ss_pred HHHHHHHHHHHhcCh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCccccccccccccccccccccCCCH
Confidence 123456677777 64 3344555655555444333221111111 111 000011
Q ss_pred H----HHHHHHHHHHHHHHHHHHh-----chhHHHHHHHHHHhcCCC------CChhHHHHHHHHHHHHHHhHHHHHHHh
Q 004372 224 T----YVCATLAAVLAAGFITDAI-----GIHAMFGAFVVGVLVPKE------GPFANALVEKVEDLVSGIFLPLYFVSS 288 (758)
Q Consensus 224 ~----~~~~~l~~~l~~~~la~~~-----g~~~~lgaf~aGL~l~~~------~~~~~~l~~ki~~~~~~~~lPlfF~~~ 288 (758)
. .+.++.....+.+++++.+ .+....++++.|+++.+- ....++.++++. ++.+-+|.+..
T Consensus 217 ~~~i~~l~~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~----~~sL~~fl~~a 292 (368)
T PF03616_consen 217 SSLIEHLALILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRIS----GISLDLFLAMA 292 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHH----HHHHHHHHHHH
Confidence 1 1222222222333444433 346778999999999751 123344444444 45555565666
Q ss_pred cccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 004372 289 GLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGI 340 (758)
Q Consensus 289 G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl 340 (758)
=+.+++..+.+. ..+.++++++..++.=+...++..+.++-++ |+..++.
T Consensus 293 lmsl~l~~l~~~-a~Plliil~~q~i~~~~f~~fv~fr~~gkdy-daavm~~ 342 (368)
T PF03616_consen 293 LMSLKLWVLADY-ALPLLIILAVQTILMVLFAYFVTFRVMGKDY-DAAVMSA 342 (368)
T ss_pred HHhccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhCCCh-hHHHHhh
Confidence 677788877752 2333333333333333444556667777775 5554433
No 67
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=96.67 E-value=0.28 Score=53.36 Aligned_cols=235 Identities=17% Similarity=0.074 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHhhccCchhHHhccchhHHH---HHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhcc-HH
Q 004372 98 NLGLIFFMFLVGLELDPKSLRQTGKKALGI---AIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITA-FP 173 (758)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts-~~ 173 (758)
.+++.++||-.|++++++++++..|+...+ -+.++++--++++.++..+. +.+ ..+.+|..+-... -.
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~---~~~-----p~l~~GliLv~~~Pgg 117 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFL---RDL-----FEYIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHc---CCC-----HHHHHHHHHHHhcchH
Confidence 345668999999999999998766554322 22333333334444444331 111 1244444432211 12
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC--C----CCCchHHHHHHHHHHHHHHHHHHHhchhH
Q 004372 174 VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS--G----EPVEETYVCATLAAVLAAGFITDAIGIHA 247 (758)
Q Consensus 174 vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~--~----~~~~e~~~~~~l~~~l~~~~la~~~g~~~ 247 (758)
+.+.+.+.+- +.+.. ++++.+.++-+++.++.........+ . ...-+....-+..-++ -.
T Consensus 118 ~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~-----------~~ 183 (328)
T TIGR00832 118 AMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVL-----------IY 183 (328)
T ss_pred HHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHH-----------HH
Confidence 2333333333 44443 55566667777776665443322111 0 0000111111111111 12
Q ss_pred HHHHHHHHHhcCCCCCh--hHHHH-HHHHHHHHHHhHH--HHHHHhcccccchhhchh-hhHHHHHHHHHHHHHHHHHHH
Q 004372 248 MFGAFVVGVLVPKEGPF--ANALV-EKVEDLVSGIFLP--LYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGT 321 (758)
Q Consensus 248 ~lgaf~aGL~l~~~~~~--~~~l~-~ki~~~~~~~~lP--lfF~~~G~~~dl~~l~~~-~~~~~~~~ii~~~~~~K~~~~ 321 (758)
++-|+++|+.+.+..+. +.+.. +|+.+....+-.. ++.+.+....+-..+... ..+......+++..+.-+...
T Consensus 184 v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg 263 (328)
T TIGR00832 184 LGIPLIAGILTRYWLLKRKGREWYEKVFLPKISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLT 263 (328)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777642221 11222 3554443222111 222222222222222211 112222233344455566777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHH
Q 004372 322 FVVSLSFKVPLREALALGILMNTKG-LVELIVLN 354 (758)
Q Consensus 322 ~~~~~~~~~~~~~~~~lgl~l~~kG-~~~l~~~~ 354 (758)
+..++.+|++.+|+..+.+--+.|- ..++.++.
T Consensus 264 ~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 264 FALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 7888999999999988877655554 33444443
No 68
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.64 E-value=0.69 Score=49.32 Aligned_cols=231 Identities=13% Similarity=0.108 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhhccCchhHHhccch--hHHHHHH-HHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH-hhccHH
Q 004372 98 NLGLIFFMFLVGLELDPKSLRQTGKK--ALGIAIA-GISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL-SITAFP 173 (758)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~l~~~~~~--~~~i~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l-s~Ts~~ 173 (758)
-..+.+.||..|+.++.+++++..|+ ....+.. .+++--++++.++..+. .+ .....|..+ +....+
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~----l~-----~~~~~glvL~~~~P~~ 81 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFK----LP-----PELAVGVLIVGCCPGG 81 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhC----CC-----HHHHHHHHheeeCCCc
Confidence 33488899999999999999886653 3333333 33332233344444332 11 122333332 222222
Q ss_pred HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 004372 174 VLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGS---GEPVEETYVCATLAAVLAAGFITDAIGIHAMFG 250 (758)
Q Consensus 174 vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~---~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~lg 250 (758)
+.+.++++.---|. .++.+...++-+++.+...+...+..+ +...+ .... -+... .-.++-
T Consensus 82 ~~s~v~t~~~~gn~---~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~-v~~~----------~i~~~--~~~v~v 145 (286)
T TIGR00841 82 TASNVFTYLLKGDM---ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLV-VPYL----------GIGLS--LVAVLI 145 (286)
T ss_pred hHHHHHHHHhCCCH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce-ecHH----------HHHHH--HHHHHH
Confidence 23334444332233 344445555556665555444333221 10100 0000 01111 234566
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004372 251 AFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV 330 (758)
Q Consensus 251 af~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~ 330 (758)
|+++|+.+.+.-|...+..+++..+....+.-+.+..++...+ .+.. ..+. .....++..+.-+...++.++.+|.
T Consensus 146 Pl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~~--~i~~-~~~~-~~~~~~ll~~~~~~~g~~~a~~~~l 221 (286)
T TIGR00841 146 PVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINVE--NLAT-IGPL-LLLVGILLPLAGFLLGYLLAKLAGL 221 (286)
T ss_pred HHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhHH--HHHH-hhHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777775333222333344444322222223333333322 2322 2232 2333344455566677778888999
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHhhc
Q 004372 331 PLREALALGILMNTKG-LVELIVLNIGK 357 (758)
Q Consensus 331 ~~~~~~~lgl~l~~kG-~~~l~~~~~~~ 357 (758)
+.+|+..++.-.+.|- ..++.++....
T Consensus 222 ~~~~~~t~~~~~g~qN~~lal~la~~~f 249 (286)
T TIGR00841 222 PWARCRTISIEVGMQNSQLCSTIAQLSF 249 (286)
T ss_pred CHhhheeeeeeeecccHHHHHHHHHHhc
Confidence 9888887766555443 34555554433
No 69
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.55 E-value=0.099 Score=61.92 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhH
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSW 303 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~ 303 (758)
.+.+.+..+.+...++..+|+++++|=.++|+++.. ...+-. -.+.++.+ .++-+.++.+.+|+++|+..+.....
T Consensus 9 ~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~~~- 85 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKLRR- 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHHHH-
Confidence 345566777788889999999999999999999952 111111 12335555 37777788889999999988764221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004372 304 GLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 346 (758)
Q Consensus 304 ~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG 346 (758)
..+.+-..-++.-++..+..+++++.++..++.+|..++.-.
T Consensus 86 -~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 -SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 111111111222233344556778999999999888775443
No 70
>PRK10490 sensor protein KdpD; Provisional
Probab=96.52 E-value=0.01 Score=73.21 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=85.7
Q ss_pred CceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 412 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 412 ~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
...|||||++++.+.+.+|+-+..++.. ...+.+++||.....+..+ .+..+++.+.+
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~---~~a~~~~l~V~~~~~~~~~-------------------~~~~~~l~~~~ 306 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAAR---LGSVWHAVYVETPRLHRLP-------------------EKKRRAILSAL 306 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHh---cCCCEEEEEEecCCcCcCC-------------------HHHHHHHHHHH
Confidence 4568999999999999999999988854 5677899998632111000 02234555565
Q ss_pred HHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC-CceEEE
Q 004372 492 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGIL 569 (758)
Q Consensus 492 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap-CsVgIl 569 (758)
+ .+++-+..+... -+ +++++.|.++|++++++.||||-+++.+. + ..+++.+++++.+| -+|=|+
T Consensus 307 ~-lA~~lGa~~~~~--~~--~dva~~i~~~A~~~~vt~IViG~s~~~~~---~-----~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 307 R-LAQELGAETATL--SD--PAEEKAVLRYAREHNLGKIIIGRRASRRW---W-----RRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred H-HHHHcCCEEEEE--eC--CCHHHHHHHHHHHhCCCEEEECCCCCCCC---c-----cCCCHHHHHHHhCCCCCEEEE
Confidence 4 555544444332 23 79999999999999999999998765432 1 13478999999998 455444
No 71
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=96.48 E-value=1.2 Score=48.31 Aligned_cols=84 Identities=14% Similarity=0.160 Sum_probs=55.4
Q ss_pred HcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCc-HHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHH
Q 004372 51 LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKS-QTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAI 129 (758)
Q Consensus 51 l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~-~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~ 129 (758)
+++.+++..+--++.|+++|.......+ +..- +. ...-+.+-++|.+ +.|.+++++++.+.+.+.+.+..
T Consensus 26 ~~~~~l~~~~~AillG~~l~n~~~~~~~---~~~~--~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~ 96 (335)
T TIGR00698 26 LADPALSALFLAILLGMVAGNTIYPQRD---EEKK--RGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADT 96 (335)
T ss_pred hccCCCcHHHHHHHHHHHHhccccccch---hhcc--chHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHH
Confidence 4567899999999999999974421111 0010 11 1233466677776 57999999999999998877766
Q ss_pred HHHHHHHHHHHHHH
Q 004372 130 AGISLPFALGIGSS 143 (758)
Q Consensus 130 ~~~~i~~~~~~~~~ 143 (758)
..+...+.+++.+.
T Consensus 97 ~~v~~~~~~~~~~g 110 (335)
T TIGR00698 97 LILTSTFFLTVFLG 110 (335)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665565555444
No 72
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.43 E-value=0.23 Score=53.86 Aligned_cols=284 Identities=18% Similarity=0.215 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHH---HHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhh
Q 004372 34 ILQICLVILLTRGLA---FILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (758)
Q Consensus 34 l~~~~lil~~~~~~~---~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gl 110 (758)
+.-.++++++++.+. .++||+.+|..+.-=+...+++|...+....-.+ |+... -+.-+..+.=.+|+
T Consensus 11 l~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~--fd~~l-------~~~fmliFFttigl 81 (404)
T COG0786 11 LILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLN--FDTSL-------QDVFMLIFFATIGL 81 (404)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEe--CCccc-------ccHHHHHHHHHhcc
Confidence 333444555555553 3688899998776544445566655443321111 22211 11112223345789
Q ss_pred ccCchhHHhccchhHHHHHHHHHHHH---HHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhh-----ccHHHHHHHHHhc
Q 004372 111 ELDPKSLRQTGKKALGIAIAGISLPF---ALGIGSSFLLRETISKGVDSTSFLVFMGVALSI-----TAFPVLARILAEL 182 (758)
Q Consensus 111 e~d~~~l~~~~~~~~~i~~~~~~i~~---~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~-----Ts~~vv~~iL~el 182 (758)
..+++.+||-+|+..........+.. .++..++.++. .+ + ...+..| ..|. |+ +-..+.+.|+
T Consensus 82 sa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lg----id--p-l~gllag-sIsl~GGHGta-AA~~~~f~~~ 152 (404)
T COG0786 82 SASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLG----LD--P-LIGLLAG-SISLVGGHGTA-AAWGPTFEDL 152 (404)
T ss_pred ccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcC----cc--H-HHHHHhc-ceeecCCCchH-HHHHHHHHhc
Confidence 99999999999988655444333322 23333333222 11 1 1122221 1111 22 3456677777
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cC-------------------C----CCC-ch--HH-HHHHHHH
Q 004372 183 KLLTADVGRMAMSAAAVNDVAAWILLALAVA-LS--GS-------------------G----EPV-EE--TY-VCATLAA 232 (758)
Q Consensus 183 kll~s~~g~lals~a~i~D~~~~~ll~~~~~-~~--~~-------------------~----~~~-~e--~~-~~~~l~~ 232 (758)
+. .....+++++|-+.=+.+.++=.-+.- .. .. + +.. .+ .. +.++.+.
T Consensus 153 G~--~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~ 230 (404)
T COG0786 153 GA--EGATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAIC 230 (404)
T ss_pred CC--cchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHH
Confidence 63 445667777765544443322111110 11 00 0 000 01 11 2333333
Q ss_pred HHHHHHHHHHhc-----hhHHHHHHHHHHhcCCCCChh--HHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHH
Q 004372 233 VLAAGFITDAIG-----IHAMFGAFVVGVLVPKEGPFA--NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGL 305 (758)
Q Consensus 233 ~l~~~~la~~~g-----~~~~lgaf~aGL~l~~~~~~~--~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~ 305 (758)
+.+.+++.+.++ +....++++.|.++.+--+.. .++.++.-+...++-+.+|....=|++.+..+.+. ..++
T Consensus 231 ~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l-~lpl 309 (404)
T COG0786 231 LAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL-ALPL 309 (404)
T ss_pred HHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 344455666655 567889999999998622111 11333333344577788888888888888877642 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 004372 306 LALVILTACLGKIVGTFVVSLSFKVPLREALAL 338 (758)
Q Consensus 306 ~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~l 338 (758)
++++.+-..+--+.+.+...+..+-+...+...
T Consensus 310 ~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~ 342 (404)
T COG0786 310 LVILAVQTIVMALFAIFVTFRLMGKNYDAAVLA 342 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHh
Confidence 333333344444555666677788777766653
No 73
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.34 E-value=0.041 Score=54.69 Aligned_cols=163 Identities=25% Similarity=0.392 Sum_probs=106.0
Q ss_pred HHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCc-----hhHHhccchhHHHHHHHHHH
Q 004372 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDP-----KSLRQTGKKALGIAIAGISL 134 (758)
Q Consensus 60 v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~-----~~l~~~~~~~~~i~~~~~~i 134 (758)
++.+++|+++|-..... ....+...+..+.+++|.+|+++-- +.+|+.+++++.+.+...+-
T Consensus 2 l~~li~Gi~lG~~~~~~-------------~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlG 68 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP-------------FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILG 68 (191)
T ss_pred eeeHHHHHHHHHHhccc-------------ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45578899988533211 1122667888999999999999854 35677788999999888888
Q ss_pred HHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH---hhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004372 135 PFALGIGSSFLLRETISKGVDSTSFLVFMGVAL---SITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALA 211 (758)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l---s~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~ 211 (758)
+++.+.++..++.... ..++.++.-+ |.++ + +++|.+ +.+.|.++.-+=++-+++++++.-++
T Consensus 69 Sllgg~l~~~ll~~~~-------~~~lav~sG~GwYSlsg-~----~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 69 SLLGGLLASLLLGLSL-------KESLAVASGFGWYSLSG-V----LITQLY--GPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHccCcHHHhHH-H----HHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887777763221 3444444433 3333 2 334433 77999999988888888888776555
Q ss_pred HHHhcC-------CCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC
Q 004372 212 VALSGS-------GEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVP 259 (758)
Q Consensus 212 ~~~~~~-------~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~ 259 (758)
.-.... |...-|. ..-.+.+..|-+...-||+-|+++.
T Consensus 135 ~r~~~~~~ai~~~GATsmD~----------tLP~i~~~~g~~~~~~a~~~G~ilt 179 (191)
T PF03956_consen 135 ARYFGPLAAIAIGGATSMDT----------TLPVISKYCGEEYVPIAFISGFILT 179 (191)
T ss_pred HHhcCCCCceecccchhHHH----------HHHHHHHHcCCceeHHHHHHHHHHH
Confidence 431111 1111111 1234566778888888888888775
No 74
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.31 E-value=0.19 Score=53.19 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhH-HHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHH
Q 004372 232 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFAN-ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI 310 (758)
Q Consensus 232 ~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~-~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii 310 (758)
.....+.+++.++++.++|-.++|+++.... ++. .-.+.++.+ ..+-+.++....|+++|+..+... +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 4455678899999999999999999996311 110 011234555 366777888899999999888643 22222222
Q ss_pred HHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHH
Q 004372 311 LTACLGK-IVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFA 368 (758)
Q Consensus 311 ~~~~~~K-~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~ 368 (758)
...++.= ++..+..+++++.++.+++.+|..+++-. .-+.+.+..|.+..+.+.-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~ 135 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQ 135 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHH
Confidence 2333333 33445566778999999999999887543 23334455566655544433
No 75
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.20 E-value=0.22 Score=58.87 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-CChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHH
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 304 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~-~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~ 304 (758)
..+.++.+.++..++..+|+++++|=.++|+++... ...-. -.+.++.+ .++-+.++.+.+|+++|+..+.......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~ 87 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS-DVDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRSI 87 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCC-cHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445556666777888999999999999999999631 11111 11335555 3677777888889999998876422211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004372 305 LLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNT 344 (758)
Q Consensus 305 ~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~ 344 (758)
... ....++.-++..+..++++++++..++.+|..+..
T Consensus 88 ~~~--g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 88 FGV--GAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111 11111111212223345568899888888775543
No 76
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=96.16 E-value=0.67 Score=50.15 Aligned_cols=248 Identities=15% Similarity=0.191 Sum_probs=138.2
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHH---HHHHhhccHHHHHHHHH-hcccc
Q 004372 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFM---GVALSITAFPVLARILA-ELKLL 185 (758)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l---~~~ls~Ts~~vv~~iL~-elkll 185 (758)
+.||.+.+.|...|-+...+.+.+..++.+..+..+++..+. .......+ +-=...-+.|. +.+-+ -++.-
T Consensus 40 L~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~----~~~~~i~lPIm~GG~GaGavPL-S~~Y~~~~g~~ 114 (347)
T TIGR00783 40 LGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD----HSLMYIVMPIMAGGVGAGIVPL-SIIYSAITGRS 114 (347)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh----HhhheeeehhcCCCcccchhhH-HHHHHHHhCCC
Confidence 578988888888888777777777777777766666554221 10000000 00001111221 11111 12333
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------CC--------CCc------h-HHHHHHHHHHHHHH--
Q 004372 186 TADVGRMAMSAAAVNDVAAWILLALAVALSGS-----------GE--------PVE------E-TYVCATLAAVLAAG-- 237 (758)
Q Consensus 186 ~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~-----------~~--------~~~------e-~~~~~~l~~~l~~~-- 237 (758)
..+.-..++.+.++..+++++.-.++--+... ++ ..+ + ..+..-+.+++..+
T Consensus 115 ~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~ 194 (347)
T TIGR00783 115 SEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMA 194 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 44455566677788888887766655333211 00 000 1 11121122222222
Q ss_pred -HHHHHh-chhHHHHHHHHHHhcCCCCChhHHHHHHHHHH---HHHHhHHHHHHHhccc-ccchhhchhhhHHHHHHHHH
Q 004372 238 -FITDAI-GIHAMFGAFVVGVLVPKEGPFANALVEKVEDL---VSGIFLPLYFVSSGLK-TNIATIQGLQSWGLLALVIL 311 (758)
Q Consensus 238 -~la~~~-g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~---~~~~~lPlfF~~~G~~-~dl~~l~~~~~~~~~~~ii~ 311 (758)
.+.+.+ ++|+..-..++|.++..-.-..+++.++...+ ...-+.+..++.+|+. +|+..+.+..+|. .+++++
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~-~vviiv 273 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ-FVVICL 273 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-HhhhHH
Confidence 222222 67888999999999886555556666654433 3334444455556766 7887776544444 345566
Q ss_pred HHHHHHHHHHHHHHHhcCCChHH-HHHHHHHHHHHH-HHHHHHHHhhccCCccc
Q 004372 312 TACLGKIVGTFVVSLSFKVPLRE-ALALGILMNTKG-LVELIVLNIGKDRKVLN 363 (758)
Q Consensus 312 ~~~~~K~~~~~~~~~~~~~~~~~-~~~lgl~l~~kG-~~~l~~~~~~~~~~~i~ 363 (758)
..+++=.+++++.+++.|+-+-| ++..|+.++.+| .-++.++..+...+++.
T Consensus 274 ~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 274 SVVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 77778888999999999976655 555676777666 45666666665555554
No 77
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.07 E-value=0.26 Score=57.75 Aligned_cols=133 Identities=15% Similarity=0.267 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHH
Q 004372 228 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG-PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 306 (758)
Q Consensus 228 ~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~-~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~ 306 (758)
.++..+++++.++..++++.++|=.++|+++.... ..-+. .+.++.+ .++-+-++...+|+++|+..+..... ..
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~~--~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVKS--IA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHhh--HH
Confidence 34566667788888999999999999999996321 11111 1234444 36667777888899999987754221 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhh
Q 004372 307 ALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQV 366 (758)
Q Consensus 307 ~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~ 366 (758)
....+...+.=++..+..++.++.++.+++.+|..++.-.. .+++....+.|.++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 11111112222333444556778999999999987766332 34455566677666543
No 78
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=96.01 E-value=3.4 Score=46.02 Aligned_cols=279 Identities=19% Similarity=0.245 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHHH---HHHcccCCChhH-HHHHH--HHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHH
Q 004372 34 ILQICLVILLTRGLA---FILRPLRQPRVI-AEITG--GILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (758)
Q Consensus 34 l~~~~lil~~~~~~~---~ll~~l~~P~iv-~~ila--GiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~ 107 (758)
+.-.++++++++.+. .++||+.+|..+ |-+++ +..++|..++... -|+.+ +.++-+.++.=.
T Consensus 9 ~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~~~~~~~~~-----~fd~~-------l~~~lm~~fFat 76 (398)
T TIGR00210 9 LVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLIYKIFGTEV-----NFDFS-------LRDPLMLIFFTT 76 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhccEEE-----EcChh-------HHHHHHHHHHHH
Confidence 333444555555543 357888998754 33333 3445676555321 12211 223334445556
Q ss_pred HhhccCchhHHhccchhHHHHHH---HHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHH-HHHHh--h-ccHHHHHHHHH
Q 004372 108 VGLELDPKSLRQTGKKALGIAIA---GISLPFALGIGSSFLLRETISKGVDSTSFLVFM-GVALS--I-TAFPVLARILA 180 (758)
Q Consensus 108 ~Gle~d~~~l~~~~~~~~~i~~~---~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l-~~~ls--~-Ts~~vv~~iL~ 180 (758)
+|+..+++.+||.+|+....... ......++|..++..++ .+ + ...+.. .+.++ - |+ +...+.+.
T Consensus 77 igLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~g----l~--P-~~Gll~gsi~~~GGHGTA-aA~g~~f~ 148 (398)
T TIGR00210 77 IGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLG----QA--P-LMGLLAGSITLSGGHGTG-AAWSPVFY 148 (398)
T ss_pred hhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CC--h-HHHHHhhCccCCCCCcHH-HHHHHHHH
Confidence 78888999999998888666555 33444556655554332 11 1 111221 11110 0 12 33445554
Q ss_pred h-ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh--cC----C-------------CC--CchH------HHHHHHHH
Q 004372 181 E-LKLLTADVGRMAMSAAAVNDVAAWILLALAVALS--GS----G-------------EP--VEET------YVCATLAA 232 (758)
Q Consensus 181 e-lkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~--~~----~-------------~~--~~e~------~~~~~l~~ 232 (758)
| +|. .+-..+++++|-+.=+.+.++=..+.... .. . ++ .++. ..+..+.+
T Consensus 149 e~~G~--~~a~~lgla~AT~GLv~g~liGgpi~~~lirk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~i~i 226 (398)
T TIGR00210 149 DNYGF--RNATEIAIACATFGLVFGGIIGGPVAKFLIIRNKLEPNCENDTKDVTIGFERPQDNRQITYNSLIETIALIAV 226 (398)
T ss_pred HHcCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccccccccccccccccCHHHHHHHHHHHHH
Confidence 4 453 33445566655554443333222111111 00 0 00 0000 11122222
Q ss_pred HH-HHHHHHHHh-----chhHHHHHHHHHHhcCCCCChh--HHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHH
Q 004372 233 VL-AAGFITDAI-----GIHAMFGAFVVGVLVPKEGPFA--NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 304 (758)
Q Consensus 233 ~l-~~~~la~~~-----g~~~~lgaf~aGL~l~~~~~~~--~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~ 304 (758)
++ +.+++.+.+ .+....+|++.|+++.+-.+.. .++.++.-+...++.+-+|.+..=|.+++..+.+ .+.
T Consensus 227 ai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~--~a~ 304 (398)
T TIGR00210 227 CLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD--LAG 304 (398)
T ss_pred HHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH--HHH
Confidence 22 333344443 3678899999999998621111 1122333333356667777777778888888874 333
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHH
Q 004372 305 LLALVILTACLGKI-VGTFVVSLSFKVPLREALA 337 (758)
Q Consensus 305 ~~~~ii~~~~~~K~-~~~~~~~~~~~~~~~~~~~ 337 (758)
-+.++.+..++.-. ...++.-+..+-+ .|+-.
T Consensus 305 Plliil~~q~i~~~l~~~fv~fr~mg~~-ydaaV 337 (398)
T TIGR00210 305 PIALILLVQVMFMALYAIFVTFRLMGKD-YDAAV 337 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhccch-HHHHH
Confidence 33333333333333 3345555666666 56554
No 79
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.82 E-value=2.2 Score=49.91 Aligned_cols=81 Identities=16% Similarity=0.358 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcc-----cCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 004372 39 LVILLTRGLAFILRP-----LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 113 (758)
Q Consensus 39 lil~~~~~~~~ll~~-----l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d 113 (758)
+.++++..+++++-| +++-.+.+-+++|+++|-.... . -+.+.++|+++|+|.+|++.-
T Consensus 13 l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~---------i-------~~~v~~~gl~lFvy~vG~~~G 76 (562)
T TIGR03802 13 IALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQ---------I-------DPGVKAVFFALFIFAIGYEVG 76 (562)
T ss_pred HHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCC---------C-------ChHHHHHHHHHHHHHhhhccC
Confidence 334444445555544 5566688999999999964321 1 123678999999999999999
Q ss_pred chhHHhccchhHHHHHHHHHHH
Q 004372 114 PKSLRQTGKKALGIAIAGISLP 135 (758)
Q Consensus 114 ~~~l~~~~~~~~~i~~~~~~i~ 135 (758)
++.++.-+|+.+...+.++++.
T Consensus 77 p~Ff~~l~~~g~~~~~~a~~~~ 98 (562)
T TIGR03802 77 PQFFASLKKDGLREIILALVFA 98 (562)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 8877655554454544444433
No 80
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.73 E-value=0.41 Score=53.51 Aligned_cols=141 Identities=15% Similarity=0.161 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhH
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSW 303 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~ 303 (758)
.+..++..+...+++.+.+|+++++|=.++|+++.. +...-.+-.+.++.+ .++=.-++...+|+.+|+..+......
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~l-aelGvi~LlF~~GLE~~~~~l~~~~~~ 88 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL-AELGVVFLLFLIGLEFDLERLKKVGRS 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHH-HHHhHHHHHHHHHHCcCHHHHHHhchh
Confidence 345556666677799999999999999999999985 111111112222222 344455667788999999888753322
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHH
Q 004372 304 GLLALVILTACLGKIVGT--FVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIM 370 (758)
Q Consensus 304 ~~~~~ii~~~~~~K~~~~--~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~l 370 (758)
. ......+.+..=++.. +... +++.++.+++.+|..+..-.. + +.+.+..|.|..+++.-..+
T Consensus 89 ~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~-~-i~~~iL~e~~~~~~~~g~~~ 153 (397)
T COG0475 89 V-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST-A-IVLKILMELGLLKTREGQLI 153 (397)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH-H-HHHHHHHHhccccchHHHHH
Confidence 1 1222222222222222 2222 589999999999887765432 1 23344455555555544443
No 81
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.54 E-value=0.51 Score=50.62 Aligned_cols=128 Identities=17% Similarity=0.205 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHH----HhchhHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhh
Q 004372 228 ATLAAVLAAGFITD----AIGIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 302 (758)
Q Consensus 228 ~~l~~~l~~~~la~----~~g~~~~lgaf~aGL~l~~-~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~ 302 (758)
+.+++.....++++ ..++++.+=|.+.|+++.| -....+....-++.. ...++.+=.+..|.++++.++.+. .
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-G 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-C
Confidence 34444555555555 4678899999999999997 444455555445543 367888889999999999888752 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 303 WGLLALVILTACLGKIVGTFVVS-LSFKVPLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 303 ~~~~~~ii~~~~~~K~~~~~~~~-~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
+......++. +..-+..++..+ +.+|++.+.+..++...+.=|.-+++...-..+
T Consensus 83 ~~~~~~~~~~-v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~ 138 (305)
T PF03601_consen 83 WKGLLIIIIV-VILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIK 138 (305)
T ss_pred ccHHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHccccc
Confidence 3223333333 333344445555 999999999999998888777766665544333
No 82
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.42 E-value=0.21 Score=46.89 Aligned_cols=136 Identities=23% Similarity=0.251 Sum_probs=82.4
Q ss_pred ceEEEEecc-CCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcc-cccCC-------cCccccHHHHHHHHHhhcC
Q 004372 586 SYTITVLFF-GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT-VSVDM-------AGNASMDEEVLSEFKLKTS 656 (758)
Q Consensus 586 ~~~I~v~f~-GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~-~~~~~-------~~~~~~d~~~~~e~~~~~~ 656 (758)
.++|++.+. |.+..+.|+..+...+...+..++++.+.+........ ..... ...+...++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999 99999999999999999999999988887543321000 00000 1112333455555555433
Q ss_pred CCCce-EEEEEEecCh-HHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEee
Q 004372 657 RNGSV-RYEERLVRNT-AETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQ 732 (758)
Q Consensus 657 ~~~~v-~y~e~~v~~~-~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq 732 (758)
..+.. .-.+....++ .+.+.......++||+++|.++ .+++.+ =-||-+-+.++. .+ ++|||+..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g----~~~l~~----~llGsvs~~v~~---~~~~pVlvv~~ 152 (154)
T COG0589 85 AAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRG----RSGLSR----LLLGSVAEKVLR---HAPCPVLVVRS 152 (154)
T ss_pred HcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCC----Cccccc----eeeehhHHHHHh---cCCCCEEEEcc
Confidence 22211 1233344455 3544444443349999999986 233322 347888888876 34 79999875
No 83
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.41 E-value=2.3 Score=45.61 Aligned_cols=82 Identities=26% Similarity=0.295 Sum_probs=56.4
Q ss_pred cccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHH-HHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHH
Q 004372 52 RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQT-VLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIA 130 (758)
Q Consensus 52 ~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~-~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~ 130 (758)
+..+++..+--++.|+++|+..++..+.+ . +... .-+.+-++|.+ +.|.++++.++.+.+.+.+.+...
T Consensus 22 ~~~~l~~~~~AillG~~i~n~~~~~~~~~-----~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~ 91 (305)
T PF03601_consen 22 FLPGLGALLIAILLGMLIGNLFFGLPARF-----K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIII 91 (305)
T ss_pred cccCccHHHHHHHHHHHHhhhccCCcHHH-----H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHH
Confidence 34678888999999999996333332211 0 1122 23466677776 579999999999999988888777
Q ss_pred HHHHHHHHHHHHH
Q 004372 131 GISLPFALGIGSS 143 (758)
Q Consensus 131 ~~~i~~~~~~~~~ 143 (758)
.+...+.+++.++
T Consensus 92 ~v~~~~~~~~~lg 104 (305)
T PF03601_consen 92 VVILTFLLTYWLG 104 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666555
No 84
>PRK04972 putative transporter; Provisional
Probab=95.31 E-value=3.7 Score=48.02 Aligned_cols=91 Identities=25% Similarity=0.433 Sum_probs=58.4
Q ss_pred HHHHHHHHHHH-HcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH-
Q 004372 40 VILLTRGLAFI-LRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL- 117 (758)
Q Consensus 40 il~~~~~~~~l-l~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l- 117 (758)
.+.++.+++.+ ++++++-...|-+++|+++|-.... .| ..+.++|+.+|+|.+|++.-++.+
T Consensus 20 ~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~---------~~-------~~~~~~gl~lF~~~vG~~~Gp~F~~ 83 (558)
T PRK04972 20 VLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFS---------IN-------TDALNLGFMLFIFCVGVEAGPNFFS 83 (558)
T ss_pred HHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCC---------CC-------hHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 33333333333 4556677777999999999963221 11 124589999999999999987655
Q ss_pred --HhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 004372 118 --RQTGKKALGIAIAGISLPFALGIGSSFLL 146 (758)
Q Consensus 118 --~~~~~~~~~i~~~~~~i~~~~~~~~~~~l 146 (758)
|+.+.+...+++.-.+++.++++.+.+++
T Consensus 84 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (558)
T PRK04972 84 IFFRDGKNYLMLALVMVGSALVIALGLGKLF 114 (558)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666665555443
No 85
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.29 E-value=0.41 Score=56.20 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCh--hHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHH
Q 004372 228 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPF--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGL 305 (758)
Q Consensus 228 ~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~--~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~ 305 (758)
+++++...+..+++.+|++.+++-.++|+++.....- ...-.+-.+.+ ..+.+++.....|+++|+..+.. .+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHHH
Confidence 4445555667788899999999999999999742111 00111223344 58889999999999999988874 2332
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhcCCChHHHHHHHHHHHHHHH
Q 004372 306 LALVILTACLGKI-VGTFVVSLSFKVPLREALALGILMNTKGL 347 (758)
Q Consensus 306 ~~~ii~~~~~~K~-~~~~~~~~~~~~~~~~~~~lgl~l~~kG~ 347 (758)
...+....++.-+ +..+.+.+++++++.+++.+|.++++-..
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~ 132 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDA 132 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCch
Confidence 3322222222222 32445566789999999999988776544
No 86
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.18 E-value=0.42 Score=46.60 Aligned_cols=114 Identities=22% Similarity=0.286 Sum_probs=73.2
Q ss_pred cccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhccchhHHHH
Q 004372 52 RPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIA 128 (758)
Q Consensus 52 ~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~i~ 128 (758)
+++++-...|-+++|+++|-. ++..+.. . +....+.+.++|+.+|++.+|++--++.+ |+.+.+...++
T Consensus 19 ~~~~LG~a~G~L~vgL~~G~~--~~~~~~~---~---~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~ 90 (169)
T PF06826_consen 19 GGFSLGAAGGVLFVGLILGAL--GRTGPIF---L---PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLG 90 (169)
T ss_pred cceeccccHHHHHHHHHHHHh--hhccCCC---C---CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566667777899999999852 2211111 1 33456789999999999999999876544 45566666667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HHhhccHHHHHHHHHh
Q 004372 129 IAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAE 181 (758)
Q Consensus 129 ~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~e 181 (758)
+.-.++|.++++..++++.+ .+ .....|. +=+.|++|.+....+.
T Consensus 91 ~~i~~~~~~~~~~~~~~~~~---l~-----~~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 91 VIITLVPLLIALVIGRYLFK---LN-----PGIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHcC---CC-----HHHHHHHHHccccCcHHHHHHHHh
Confidence 76667777766666653322 11 2233333 3477888877776554
No 87
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.80 E-value=0.49 Score=50.58 Aligned_cols=115 Identities=14% Similarity=0.117 Sum_probs=83.3
Q ss_pred HHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHH
Q 004372 239 ITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKI 318 (758)
Q Consensus 239 la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~ 318 (758)
..+..|.++..=|.+.|+++..-.+...+...-++.. ...++.+=.++.|++++++++.+- .+. .+.+.+..+..-+
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~~-~v~~~~~~l~~t~ 107 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GGS-GVLIIAITLSSTF 107 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Ccc-HHHHHHHHHHHHH
Confidence 3445566688999999999986555555555555555 467778888999999999988752 332 2344445556667
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 004372 319 VGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 356 (758)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~ 356 (758)
+.+++.++++|++++.++.+|..-+.=|.-++....-.
T Consensus 108 ~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pv 145 (334)
T COG2855 108 LFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPV 145 (334)
T ss_pred HHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCc
Confidence 77888888999999999999988877787666655433
No 88
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.65 E-value=0.15 Score=59.93 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=79.6
Q ss_pred CCceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 004372 411 KAQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 490 (758)
Q Consensus 411 ~~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~a 490 (758)
...-|||||++.+.....+++-+..++.. .....+++|+..-..+..+. .+.+++...
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~---~~a~~~av~v~~~~~~~~~~-------------------~~~~~l~~~ 303 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASR---LHAKWTAVYVETPELHRLSE-------------------KEARRLHEN 303 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHH---hCCCeEEEEEeccccccccH-------------------HHHHHHHHH
Confidence 44569999999999999999988888854 44556899986321111110 112233333
Q ss_pred HHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCC
Q 004372 491 FEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPC 564 (758)
Q Consensus 491 f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApC 564 (758)
.+.+++-+-. ..+..+ .++.+.|.++|++.++.-||+|-+.+.+....+ .+++.+++++++|-
T Consensus 304 -~~Lae~lGae--~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~------~~~l~~~L~~~~~~ 366 (890)
T COG2205 304 -LRLAEELGAE--IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF------KGSLADRLAREAPG 366 (890)
T ss_pred -HHHHHHhCCe--EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh------cccHHHHHHhcCCC
Confidence 3333332222 333344 699999999999999999999987764432222 36788899988875
No 89
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=94.59 E-value=7.1 Score=41.07 Aligned_cols=257 Identities=19% Similarity=0.179 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCchhHHHHHHHHHHh
Q 004372 90 QTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISK-GVDSTSFLVFMGVALS 168 (758)
Q Consensus 90 ~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~l~l~~~ls 168 (758)
.+..+++-+--+-...++.=++.|.+++.|.++|.+.+=+. ..+..++|+++++.+.+.+.. -|. ..-+++-|
T Consensus 55 S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli-~sv~~vlGfIl~yp~~ksf~gd~Wk-----a~gmi~gS 128 (384)
T COG5505 55 SPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLI-SSVGTVLGFILAYPLLKSFIGDLWK-----AGGMISGS 128 (384)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHHHHhhhcchHHh-----hhhheeee
Confidence 34556666655555666777899999999999998755433 344556777777766554321 121 11111111
Q ss_pred hccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHHHhc--------C----------------------
Q 004372 169 ITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLA-LAVALSG--------S---------------------- 217 (758)
Q Consensus 169 ~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~-~~~~~~~--------~---------------------- 217 (758)
-|.=..=...+ .+.+..| .-..+++..-|.+..-+.. +.+.+.. +
T Consensus 129 ytGGSaNmAAm--qaaLeVP--~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e~a~~e~ywK 204 (384)
T COG5505 129 YTGGSANMAAM--QAALEVP--GEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKADGNEGASAESYWK 204 (384)
T ss_pred eeCCcchHHHH--HhhhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhhhhhhhhhhh
Confidence 11100011111 1212332 3456788888887654332 2222110 0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhchhHH---------------HHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHH
Q 004372 218 GEPVEETYVCATLAAVLAAGFITDAIGIHAM---------------FGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLP 282 (758)
Q Consensus 218 ~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~---------------lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lP 282 (758)
+++.+-..+.+.+...+....++...|-+-. +=.=+.||++. -.|+++ ..-.+++. .+++-
T Consensus 205 rkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~a-LtPf~~--lpgs~elg-tv~lY 280 (384)
T COG5505 205 RKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIA-LTPFER--LPGSQELG-TVLLY 280 (384)
T ss_pred cCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHH-hCcccc--CCchhhhh-HHHHH
Confidence 4555556677777666666666665554322 11224555554 233322 11234443 67777
Q ss_pred HHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCcc
Q 004372 283 LYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVL 362 (758)
Q Consensus 283 lfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i 362 (758)
.|++.++.-.|+..+...+.|.+.. +...+...+..+..+++++.++.+-....+ -|..|-.+.-....+.++..+
T Consensus 281 ~~v~vias~Ad~~~i~taP~~i~~g---f~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A~nr~lv 356 (384)
T COG5505 281 LFVVVIASPADLRLIVTAPLIILFG---FIILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIAKNRELV 356 (384)
T ss_pred HHHHHhccchhHHHHHhhhHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhhcCchhc
Confidence 8999999999999887644443322 333445666677888999998876544444 677777777777777765555
Q ss_pred ch
Q 004372 363 ND 364 (758)
Q Consensus 363 ~~ 364 (758)
.+
T Consensus 357 ~~ 358 (384)
T COG5505 357 AP 358 (384)
T ss_pred ch
Confidence 43
No 90
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.37 E-value=1.2 Score=54.63 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-----CChhH-----HHHHHHHHHHHHHhHHHHHHHhcccccc
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-----GPFAN-----ALVEKVEDLVSGIFLPLYFVSSGLKTNI 294 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~-----~~~~~-----~l~~ki~~~~~~~~lPlfF~~~G~~~dl 294 (758)
++.+++++.-+++++...+|++.++|=.++|+++... +.... .-.+.++.+. .+-+-+|.+.+|+++|+
T Consensus 47 ql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~la-~lGlillmFliGLE~Dl 125 (832)
T PLN03159 47 QLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETMA-NLGLLYFLFLVGVEMDI 125 (832)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHHH-HHHHHHHHHHHHHcCcH
Confidence 3445555666777888899999999999999999631 00100 1112355553 66677788889999999
Q ss_pred hhhch
Q 004372 295 ATIQG 299 (758)
Q Consensus 295 ~~l~~ 299 (758)
..+..
T Consensus 126 ~~lr~ 130 (832)
T PLN03159 126 SVIRR 130 (832)
T ss_pred HHHHh
Confidence 88864
No 91
>TIGR00930 2a30 K-Cl cotransporter.
Probab=94.04 E-value=22 Score=44.49 Aligned_cols=131 Identities=8% Similarity=0.136 Sum_probs=80.1
Q ss_pred ceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 004372 413 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 492 (758)
Q Consensus 413 elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~ 492 (758)
.-++|+.+.+|++.+.+++++..+.+. .. -..+.|+++.+.+... ++.++..+..+
T Consensus 575 rPqiLvl~~~p~~~~~Ll~f~~~l~~~---~g-l~i~~~v~~~~~~~~~--------------------~~~~~~~~~~~ 630 (953)
T TIGR00930 575 RPQCLVLTGPPVCRPALLDFASQFTKG---KG-LMICGSVIQGPRLECV--------------------KEAQAAEAKIQ 630 (953)
T ss_pred CCeEEEEeCCCcCcHHHHHHHHHhccC---Cc-EEEEEEEecCchhhhH--------------------HHHHHHHHHHH
Confidence 458999999999999999999999843 34 3566688874322110 00112222233
Q ss_pred HhhhccceEEEEeEEecCCCchHHHHHHHHHhc-----CccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceE
Q 004372 493 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESK-----RAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 567 (758)
Q Consensus 493 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~-----~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVg 567 (758)
.+-++.+++.-..+.++ +++.+++..+.+-. +.+.++|||...|+.+... .-..+-++.+... ++...
T Consensus 631 ~~~~~~~~~~f~~~~~~--~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~--~~~~y~~~i~~a~-~~~~~-- 703 (953)
T TIGR00930 631 TWLEKNKVKAFYAVVVA--DDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAEPR--AWETYIGIIHDAF-DAHLA-- 703 (953)
T ss_pred HHHHHhCCCeEEEEecC--CCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhccch--hHHHHHHHHHHHH-HcCCc--
Confidence 33333444443344555 69999999999874 5899999999888754321 1123555555554 34444
Q ss_pred EEecCCC
Q 004372 568 ILIDRGL 574 (758)
Q Consensus 568 Ilvdrg~ 574 (758)
+.+-|+.
T Consensus 704 v~i~r~~ 710 (953)
T TIGR00930 704 VVVVRNS 710 (953)
T ss_pred EEEEccc
Confidence 4555654
No 92
>COG2985 Predicted permease [General function prediction only]
Probab=94.00 E-value=3.5 Score=46.05 Aligned_cols=78 Identities=28% Similarity=0.461 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhccCchh---HHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HHhhccHH
Q 004372 98 NLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFP 173 (758)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~ 173 (758)
++|+++|.+.+|+|--+.. +|+.+++-..+++.- ++.+..+++++++.+. ++. .+..|. +-+.|++|
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~--~~~---~~~~Gm~sGAlTsTP 132 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG--IDL---GLIAGMFSGALTSTP 132 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC--CCH---HHhhhhhcccccCCc
Confidence 8999999999999998654 567777766665544 4455556666665542 221 222222 23566666
Q ss_pred HHH---HHHHhccc
Q 004372 174 VLA---RILAELKL 184 (758)
Q Consensus 174 vv~---~iL~elkl 184 (758)
... .+|.|++.
T Consensus 133 ~L~aa~~~L~~lg~ 146 (544)
T COG2985 133 GLGAAQDILRELGA 146 (544)
T ss_pred hhHHHHHHHHhhcc
Confidence 554 45666664
No 93
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=93.98 E-value=2.5 Score=45.88 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHH-----hchhHHHHHHHHHHhcCCCC--ChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhh
Q 004372 229 TLAAVLAAGFITDA-----IGIHAMFGAFVVGVLVPKEG--PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 301 (758)
Q Consensus 229 ~l~~~l~~~~la~~-----~g~~~~lgaf~aGL~l~~~~--~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~ 301 (758)
.+.+.+.+.++++. .++++.+=|.+.|+++.|.. +..+....-++ +....++-+=.+..|+++++.++.. .
T Consensus 10 ~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~-~ 87 (335)
T TIGR00698 10 MALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIAD-V 87 (335)
T ss_pred HHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHH-h
Confidence 34444455555554 47888888999999998622 22222222233 3345666677888999999988864 2
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 004372 302 SWGLLALVILTACLGKIVG-TFVVSLSFKVPLREALALGILMNTKGLVELIVLNIG 356 (758)
Q Consensus 302 ~~~~~~~ii~~~~~~K~~~-~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~ 356 (758)
.+..+ .+.+.....-+.. .++..+.+|++++.+..++...+.=|.-+++...-.
T Consensus 88 G~~~l-~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~ 142 (335)
T TIGR00698 88 GPNEI-VADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPV 142 (335)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccc
Confidence 33222 2222333333444 444448899999999999888777777666555433
No 94
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.93 E-value=1.4 Score=52.71 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-CChhHHHH----HHHHHHHHHHhHHHHHHHhcccccchhhchhhh
Q 004372 228 ATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKE-GPFANALV----EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 302 (758)
Q Consensus 228 ~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~-~~~~~~l~----~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~ 302 (758)
++++..+++.++.+.+.++..+-..++|+++... .+.-.... +.+...++.+.+++-.+..|++++...+.. .
T Consensus 21 ~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr--~ 98 (810)
T TIGR00844 21 FSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLK--H 98 (810)
T ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHH--h
Confidence 3344555666777788889999999999988631 11111110 111111457888888889999999988874 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHH
Q 004372 303 WGLLALVILTACLGKIVGTFVVSLS--FKVPLREALALGILMNTKGLV 348 (758)
Q Consensus 303 ~~~~~~ii~~~~~~K~~~~~~~~~~--~~~~~~~~~~lgl~l~~kG~~ 348 (758)
|..+..+++.+...-++.+.+.+++ .++++..++.+|.++++-.-+
T Consensus 99 wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 99 WVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 4444444444444444545555543 499999999999999887753
No 95
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=93.17 E-value=0.45 Score=45.66 Aligned_cols=114 Identities=19% Similarity=0.229 Sum_probs=64.7
Q ss_pred CChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccc----hhHHHHHHH
Q 004372 56 QPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGK----KALGIAIAG 131 (758)
Q Consensus 56 ~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~----~~~~i~~~~ 131 (758)
+-..-+-+++|+++|- +++..+..-. .| ......+.++|+.+|++.+|++--.+.+..-.+ ....++..-
T Consensus 21 LG~~~G~L~vgL~~G~--~~~~~p~~~~-~p---~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v 94 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGH--FGATGPLTWY-IP---FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALI 94 (154)
T ss_pred ecccHHHHHHHHHHHh--ccccCCccee-cC---hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 3337788999999995 3332221111 12 235677899999999999999998766543322 223333444
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HHhhccHHHHHHHHHhcc
Q 004372 132 ISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAELK 183 (758)
Q Consensus 132 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~elk 183 (758)
.++|.++++++...+ +..+ .....|. +=+.|++|.+....+..+
T Consensus 95 ~~~~~~~~~~~~~~~---~~~~-----~~~~~G~~aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 95 TVVPTLLVAVALIKL---LRIN-----YALTAGMLAGATTNTPALDAANDTLR 139 (154)
T ss_pred HHHHHHHHHHHHHHH---hCCC-----HHHHHHHHhccccChHHHHHHHHHhc
Confidence 444444444333322 2111 1233443 347888888877655443
No 96
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=93.16 E-value=1.1 Score=52.17 Aligned_cols=120 Identities=17% Similarity=0.255 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHH
Q 004372 227 CATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLL 306 (758)
Q Consensus 227 ~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~ 306 (758)
+..++.+.+...+++.+++++.++-+++|+++.. .+......-.-+.+ ..+++|......|+++|...+... +...
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~-~~~~~~~~~~~~~~-~~~~Lp~lLF~~g~~~~~~~l~~~--~~~i 79 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGL-AGLLPEVPLDREIV-LFLFLPPLLFEAAMNTDLRELREN--FRPI 79 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHh-ccccCCCCCCHHHH-HHHHHHHHHHHHHhcCCHHHHHHH--HHHH
Confidence 3344555566678888999999999999999873 11111110000122 357889999999999999988742 3223
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 004372 307 ALVILTAC-LGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 350 (758)
Q Consensus 307 ~~ii~~~~-~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l 350 (758)
..+.+... +.-.+.++...++.++|+..++.+|.++++-..+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 32222222 223333334444678999999999999988876554
No 97
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.13 E-value=5.6 Score=39.42 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhccCchhHHhccchhHH
Q 004372 99 LGLIFFMFLVGLELDPKSLRQTGKKALG 126 (758)
Q Consensus 99 lgl~~~lF~~Gle~d~~~l~~~~~~~~~ 126 (758)
+.+.+.||..|++++++++++..|+...
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~ 29 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKL 29 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHH
Confidence 4577899999999999999987766543
No 98
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=93.08 E-value=0.28 Score=41.82 Aligned_cols=48 Identities=21% Similarity=0.062 Sum_probs=38.7
Q ss_pred chHHHHHHHHHhcCccEEEecCCcccccCCcccccccchH-HHHHHHhhcCCCce
Q 004372 513 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFR-WVNQRVLKHAPCSV 566 (758)
Q Consensus 513 ~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~-~vn~~VL~~ApCsV 566 (758)
.+.+.+.+.|++.++|.|++|.|.....+..+ .+ ++..++.++++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~------~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL------GASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc------CchhhhhhcccccCCce
Confidence 78899999999999999999999875444333 33 56678899999996
No 99
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=91.94 E-value=1.4 Score=51.67 Aligned_cols=117 Identities=21% Similarity=0.303 Sum_probs=73.3
Q ss_pred ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH---HhccchhHHHHH
Q 004372 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL---RQTGKKALGIAI 129 (758)
Q Consensus 53 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l---~~~~~~~~~i~~ 129 (758)
++.+-...|-+++|+++|- +++..+... -. +......+.++|+.+|++.+|+.--++.+ ++.+.+...+++
T Consensus 412 p~~lg~~~g~l~~gl~~g~--~~~~~~~~~-~~---p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~ 485 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGW--LRSKHPTFG-NI---PSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGI 485 (562)
T ss_pred ceeehhhHHHHHHHHHHHH--hcccCCcce-ec---CHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 3445556788999999985 332221110 12 23456678999999999999999876544 555666666667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HHhhccHHHHHHHHHhcc
Q 004372 130 AGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAELK 183 (758)
Q Consensus 130 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~elk 183 (758)
.-.++|.++++.+++++.+. ......|+ +-+.|++|.+.......+
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~t~~l~~a~~~~~ 532 (562)
T TIGR03802 486 VVTILPLIITMLIGKYVLKY--------DPALLLGALAGARTATPALGAVLERAG 532 (562)
T ss_pred HHHHHHHHHHHHHHHHHhCC--------CHHHHHHHhhccCCCcHHHHHHHHhcC
Confidence 66677777666666433221 12334443 457888888877655443
No 100
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.95 E-value=9.3 Score=36.72 Aligned_cols=123 Identities=15% Similarity=0.190 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhchh--HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhh-hHHH
Q 004372 229 TLAAVLAAGFITDAIGIH--AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ-SWGL 305 (758)
Q Consensus 229 ~l~~~l~~~~la~~~g~~--~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~-~~~~ 305 (758)
.+......+++.+.+|+. .++|+++++.++.-.....-++-+.+. .+-.-+.-..+|.+++...+.... .+..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~----~~~qviiG~~iG~~f~~~~l~~~~~~~~~ 78 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLL----ALAQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHH----HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 345556667778888885 899999998887632211111112222 222334457889999877665432 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 306 LALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKD 358 (758)
Q Consensus 306 ~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~ 358 (758)
....++..++.-++..++..+..++++.+++ ++ ..|-|.-++.+.....+
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~g 128 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAELG 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHhC
Confidence 4455556666677778888899999998875 33 46888888877665443
No 101
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.58 E-value=1.9 Score=41.56 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcccCCC--hhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhH
Q 004372 40 VILLTRGLAFILRPLRQP--RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSL 117 (758)
Q Consensus 40 il~~~~~~~~ll~~l~~P--~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l 117 (758)
.+.++.+.+.+++++|+| ..+|-++++.++.-. |..+ ...-..+.+++.+++--.+|.+++.+.+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~--~~~~-----------~~~P~~~~~~~qviiG~~iG~~f~~~~l 69 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLA--GGLE-----------ITLPPWLLALAQVVIGILIGSRFTREVL 69 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhc--CCcc-----------CCCCHHHHHHHHHHHHHHHHccCCHHHH
Confidence 455677788899999988 566666666655521 1111 1112356677778888899999999998
Q ss_pred HhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004372 118 RQTGKKALGIAIAGISLPFALGIGSSFLLRETI 150 (758)
Q Consensus 118 ~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~ 150 (758)
++..+. +...+...+..+..+...++++.+..
T Consensus 70 ~~~~~~-~~~~l~~~~~~l~~~~~~~~~l~~~~ 101 (156)
T TIGR03082 70 AELKRL-WPAALLSTVLLLALSALLAWLLARLT 101 (156)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876554 44455555666666777777776654
No 102
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.11 E-value=6 Score=44.14 Aligned_cols=168 Identities=13% Similarity=0.110 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 35 LQICLVILLTRGLAFILRP--LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (758)
Q Consensus 35 ~~~~lil~~~~~~~~ll~~--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~ 112 (758)
..+.+.+.+++.+...++. +.+|.++..+++|+++.... . ..+. ... ..+..+.++++.+-+++-.+=..+
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~-~----~~~~-~~~-~~~~i~~I~~~sLdlfl~~AlmsL 294 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPL-S----FKKF-PWV-AERAVSVIGNVSLSLFLAIALMSL 294 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHH-H----HhCc-ccc-chHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455555667777777765 67999999999999998532 1 1111 011 234899999999999998888899
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHH-HHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHH-HHHHH-HhccccCChh
Q 004372 113 DPKSLRQTGKKALGIAIAGISLPFALGI-GSSFLLRETISKGVDSTSFLVFMGVALSITAFPV-LARIL-AELKLLTADV 189 (758)
Q Consensus 113 d~~~l~~~~~~~~~i~~~~~~i~~~~~~-~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~v-v~~iL-~elkll~s~~ 189 (758)
++..+....-..+.+.+.+.++..+... +....+++.++ . .-..+-.+|..+..|..++ -.+.+ ++.|-.+...
T Consensus 295 ~L~~l~~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~yd--a-aV~~ag~~G~~lGatptaianm~av~~~yg~s~~af 371 (398)
T TIGR00210 295 QLWELADLAGPIALILLVQVMFMALYAIFVTFRLMGKDYD--A-AVLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAF 371 (398)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHH--H-HHHhcccccccccchHHHHHHHHHHHhccCCCCcce
Confidence 9999999999999999999887765443 33333333221 0 0011234454553333322 22333 3334323222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004372 190 GRMAMSAAAVNDVAAWILLALAV 212 (758)
Q Consensus 190 g~lals~a~i~D~~~~~ll~~~~ 212 (758)
=-.=+-.+.+-|+...++....+
T Consensus 372 ~ivPlvgaf~id~~n~~~i~~f~ 394 (398)
T TIGR00210 372 IVVPLVGAFFIDIINALVIKQFL 394 (398)
T ss_pred ehhhhHHHHHHHHhhHHHHHHHH
Confidence 22334577888888776665543
No 103
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=87.78 E-value=12 Score=40.39 Aligned_cols=139 Identities=18% Similarity=0.210 Sum_probs=79.5
Q ss_pred ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHH
Q 004372 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGI 132 (758)
Q Consensus 53 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~ 132 (758)
-++.|.+++.+ .|+++...... +|..-.+.++.+++...-+-||..|+.++.+.+++..+..+...+.-.
T Consensus 179 ~~~nP~iia~i-~Gl~~~~~~i~---------lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~kl 248 (321)
T TIGR00946 179 LIKFPPLWAPL-LSVILSLVGFK---------MPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRF 248 (321)
T ss_pred HHhCCChHHHH-HHHHHHHHhhc---------CcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHH
Confidence 34778887754 45666643221 344446789999999999999999999998888777666666655555
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 133 SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (758)
Q Consensus 133 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~ 212 (758)
++--++++.+...+.. + ....-..+.++....++...++.+.--.+. +.+-+...++-+++.+.+.+..
T Consensus 249 il~P~i~~~~~~~~~l----~----~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp~~~ 317 (321)
T TIGR00946 249 LVQPAVMAGISKLIGL----R----GLELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLPLFI 317 (321)
T ss_pred HHHHHHHHHHHHHhCC----C----hHHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333434433321 1 122334444455445555555554332333 3444444555555555544433
No 104
>PRK10490 sensor protein KdpD; Provisional
Probab=86.90 E-value=2.9 Score=52.01 Aligned_cols=124 Identities=9% Similarity=0.033 Sum_probs=78.5
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEE
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 664 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~ 664 (758)
...||+|...|+|+.+..+..|.|||+.-+.+++++++.+.+.... ..+.++.+.+ .+ ++.++.. . .+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~-----~~~~~~~l~~-~~-~lA~~lG--a--~~~ 317 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRL-----PEKKRRAILS-AL-RLAQELG--A--ETA 317 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcC-----CHHHHHHHHH-HH-HHHHHcC--C--EEE
Confidence 4579999999999999999999999999999999999985532210 0111112222 12 2333332 1 233
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCceeEEEE
Q 004372 665 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 730 (758)
Q Consensus 665 e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~SvLvv 730 (758)
...-+|..+++....+..+.+.+|+|+++.+ .| + --|.+-|-|....-. .-|.||
T Consensus 318 ~~~~~dva~~i~~~A~~~~vt~IViG~s~~~-------~~--~-~~~s~~~~l~r~~~~-idi~iv 372 (895)
T PRK10490 318 TLSDPAEEKAVLRYAREHNLGKIIIGRRASR-------RW--W-RRESFADRLARLGPD-LDLVIV 372 (895)
T ss_pred EEeCCCHHHHHHHHHHHhCCCEEEECCCCCC-------CC--c-cCCCHHHHHHHhCCC-CCEEEE
Confidence 4444566665555555555999999999832 25 1 135777877764322 567777
No 105
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=85.75 E-value=1.8 Score=45.15 Aligned_cols=109 Identities=8% Similarity=0.019 Sum_probs=62.7
Q ss_pred EeccCCcChHHHHHHHHHHhhCC-CeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEE-E--
Q 004372 591 VLFFGGRDDREALACGARMAEHP-GISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-R-- 666 (758)
Q Consensus 591 v~f~GG~ddreAL~~a~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e-~-- 666 (758)
+.+.=.|.|+-||+.|.|+.++. +.++|++.+-+.+.. +++.+.+....-. ++....+ .
T Consensus 30 ~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~---------------~~~~lr~aLAmGa--D~avli~d~~~ 92 (256)
T PRK03359 30 ADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT---------------NAKGRKDVLSRGP--DELIVVIDDQF 92 (256)
T ss_pred CccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh---------------hHHHHHHHHHcCC--CEEEEEecCcc
Confidence 34555699999999999999875 489999999865432 1344555444422 2222222 1
Q ss_pred EecChHHHHHHHHhc---cCCCEEEEccCC---Cchh-ccccccCCCCCccccchhh
Q 004372 667 LVRNTAETIAVIREV---SRCNLLLVGRMP---DGEL-ALALSTRSDCLELGPVGSL 716 (758)
Q Consensus 667 ~v~~~~e~~~~i~~~---~~~DL~iVGr~~---~~~~-~~gl~~w~e~~eLG~iGd~ 716 (758)
.-.|...|..+|... .+|||++-|+.. .+-+ -.-+.+|-..|-+..+-++
T Consensus 93 ~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 93 EQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred cCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 112444444444322 129999999997 2221 1223344445666555554
No 106
>PRK04972 putative transporter; Provisional
Probab=85.27 E-value=7.2 Score=45.65 Aligned_cols=115 Identities=19% Similarity=0.224 Sum_probs=74.3
Q ss_pred CCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchh---HHhccchhHHHHHHH
Q 004372 55 RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAG 131 (758)
Q Consensus 55 ~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~ 131 (758)
++-.--|.+++|+++|- +++..+.... . +......+.++|+.+|+..+|+.--.+. +++.+.+.+.+++.-
T Consensus 409 ~LG~agG~L~~gl~~g~--~~~~~~~~~~-~---p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~ 482 (558)
T PRK04972 409 GIGNAAGLLFAGIMLGF--LRANHPTFGY-I---PQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIV 482 (558)
T ss_pred eccccHHHHHHHHHHHh--ccccCCCcee-e---CHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHH
Confidence 34455678999999984 3333322211 2 2345678999999999999999876544 455566677777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH-HHHhhccHHHHHHHHHhcc
Q 004372 132 ISLPFALGIGSSFLLRETISKGVDSTSFLVFMG-VALSITAFPVLARILAELK 183 (758)
Q Consensus 132 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~iL~elk 183 (758)
.++|.++++++++++.+. .....+| ++-+.|++|.+.......+
T Consensus 483 t~~~~~~~~~~~~~~~k~--------~~~~~~G~~aG~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 483 SLVPVVICFLFGAYVLRM--------NRALLFGAIMGARTCAPAMEIISDTAR 527 (558)
T ss_pred HHHHHHHHHHHHHHHHcC--------CHHHHHHHHhCCCCCcHHHHHHHhhcC
Confidence 778877777777554431 1223444 4457788887777654433
No 107
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.03 E-value=8.4 Score=38.39 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 004372 306 LALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLN 354 (758)
Q Consensus 306 ~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~ 354 (758)
.+.+-+...++-+++.++.+++.++|++|++.++..++--..-+..+..
T Consensus 58 ~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 58 ALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 4456667788899999999999999999999998877666665555543
No 108
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=83.83 E-value=22 Score=40.22 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcC-CC-CChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhh
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVP-KE-GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 302 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~-~~-~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~ 302 (758)
+..+++.+...++.+++.+..+.+..+.+.|++.. .. .+........-|.+. .+++|+-....|+++|...+.. .
T Consensus 10 ~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~-~l~l~ilLf~~g~~l~~~~l~~--~ 86 (429)
T COG0025 10 LLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFL-VLFLAILLFAGGLELDLRELRR--V 86 (429)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHH-HHHHHHHHHHhHhcCCHHHHHH--h
Confidence 34556677777888888888877777777777665 11 111111221223332 6788888888899999998875 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH
Q 004372 303 WGLLALVILTACLGKIVGTFVVSLSF--KVPLREALALGILMNTKGLVEL 350 (758)
Q Consensus 303 ~~~~~~ii~~~~~~K~~~~~~~~~~~--~~~~~~~~~lgl~l~~kG~~~l 350 (758)
|..+..+.....+...+++....++. ++|+..++.+|.++++-.-+.+
T Consensus 87 ~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 87 WRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 33344444444445555555555555 8899999999998888776555
No 109
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=83.66 E-value=12 Score=36.99 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=64.9
Q ss_pred HHHHHHHHHHccc---CCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHH-------HHHHHHhhc
Q 004372 42 LLTRGLAFILRPL---RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLI-------FFMFLVGLE 111 (758)
Q Consensus 42 ~~~~~~~~ll~~l---~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~-------~~lF~~Gle 111 (758)
+..++.+++.||+ |++.----|+.|+++...+ |.... -.+....+..++-+|++ |-.-....|
T Consensus 23 ~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~g-G~~Tg------G~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~ 95 (254)
T TIGR00808 23 LMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVG-GVYTG------GEKGLADIAIFGGFGLMGGAMLRDLAIVATAFE 95 (254)
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHc-ccccC------CccccchhhhhcchhhhhhHHHHHHHHHHHhhc
Confidence 3334444555554 6777777788888886421 11110 01222233344444432 233456789
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004372 112 LDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRET 149 (758)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~ 149 (758)
.|.+++||.+..-..--+.+.++||+.|..+++.+++.
T Consensus 96 v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 96 VDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred CcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999888888899999999999999988763
No 110
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=82.42 E-value=3 Score=44.97 Aligned_cols=115 Identities=18% Similarity=0.214 Sum_probs=73.2
Q ss_pred HHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHH-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH
Q 004372 274 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALV-ILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIV 352 (758)
Q Consensus 274 ~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~i-i~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~ 352 (758)
.+.++++=|+.|..+|..+|++-+... .+. .++ -..+-++-| .+++.+..++++.+|+-.+|.+=+.-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllan-P~~--~ll~gaaAQ~GiF-~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILAR-PWA--SITVALFAEMGTF-ATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhC-hHH--HHHHHHHHHhhHH-HHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 344678889999999999999877643 221 122 234444443 355666778999999999999888888877776
Q ss_pred HHhhc-c-CCccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhhhh
Q 004372 353 LNIGK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRAR 396 (758)
Q Consensus 353 ~~~~~-~-~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~ 396 (758)
.+..- + .+.+.-..|+-|- +.-.+-||+++.+-.+++|..
T Consensus 177 s~kLAp~Llg~IaVAAYsYMa----LVPiiqPpimklLttkkER~I 218 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLYLS----LTYAGYPYLIKLLVPKKYRGL 218 (399)
T ss_pred HHhhhhHhHHHHHHHHHHHHH----HHhcccchHHHhhcCHHHHcc
Confidence 65322 1 1233333444442 234567888888765554433
No 111
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=82.10 E-value=79 Score=34.10 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004372 246 HAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVV 324 (758)
Q Consensus 246 ~~~lgaf~aGL~l~~-~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~ 324 (758)
+|.+=|.++|+++.- +-++...+.+-++.+. ....|+-.+.+|+.++...+.. .+.......+..++.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg-~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISILS-GATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHHH-HHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777763 2233455566666664 8899999999999988766542 23334444555666666666777
Q ss_pred HHhcCCChHHHHH--HHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004372 325 SLSFKVPLREALA--LGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 388 (758)
Q Consensus 325 ~~~~~~~~~~~~~--lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l 388 (758)
+..++.+...... +-. ..|-+....+++ .+.|. +++..+..+....+.+.++-|++.++
T Consensus 259 ~~~~~l~~~~~~~~vl~a-a~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQA-ALPGGAVAAVLA---TEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHhCCChHHHHHHHHHH-cCChhhHHHHHH---HHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776544322 222 123333333333 33333 44555555555555567777766554
No 112
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=81.76 E-value=11 Score=41.76 Aligned_cols=136 Identities=18% Similarity=0.245 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHH-HhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 247 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV-SSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVS 325 (758)
Q Consensus 247 ~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~-~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~ 325 (758)
+++...++|.+..+..-+.++-.+.+..++..+++|.+.+ .++-..+...+. .++...+..++..+.-++..++..
T Consensus 8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 84 (385)
T PF03547_consen 8 PIFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLS 84 (385)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666555566777788999999999998844 444433343333 222233332333333345556666
Q ss_pred HhcCCChHHHHH--HHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 004372 326 LSFKVPLREALA--LGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 390 (758)
Q Consensus 326 ~~~~~~~~~~~~--lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~ 390 (758)
++++.+.++.-. ++...+.-|.+.+-+....... +.....++..++...+.-++...+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 85 RLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred HhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 777777665443 3433455666666665544333 22233333344444444444444443
No 113
>COG2855 Predicted membrane protein [Function unknown]
Probab=81.42 E-value=84 Score=34.00 Aligned_cols=88 Identities=22% Similarity=0.206 Sum_probs=58.4
Q ss_pred HHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHH
Q 004372 50 ILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAI 129 (758)
Q Consensus 50 ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~ 129 (758)
....+++|..+--|+-|+++|... ..-.... ..-...-..+-++|.+ +.|.+++++++...+.+.+.+-.
T Consensus 31 ~~~~~~l~al~lAIllGi~l~~l~-~~~~~~~-----~GI~fs~k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~ 100 (334)
T COG2855 31 FSIHLGLSALTLAILLGILLGILP-QIPAQTS-----AGITFSSKKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIA 100 (334)
T ss_pred HhhhcCchHHHHHHHHHHHHhccc-cchhhhc-----cchhhhHHHHHHHHHH----HHcceeeHHHHHHcCccHHHHHH
Confidence 345568999999999999999321 1111000 0011123345566665 56899999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004372 130 AGISLPFALGIGSSFLLR 147 (758)
Q Consensus 130 ~~~~i~~~~~~~~~~~l~ 147 (758)
.....++++++.+..+++
T Consensus 101 ~~l~~t~~~~~~lg~~lg 118 (334)
T COG2855 101 ITLSSTFLFAYFLGKLLG 118 (334)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 777777777776666443
No 114
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=81.25 E-value=12 Score=39.90 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=54.3
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHH
Q 004372 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 138 (758)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~ 138 (758)
.+--++.|+++|...- .. .+.++.=..+++.|+.|..|.++|++.+.+.+.+.+.+++..+.+++..
T Consensus 169 lilpILiGmilGNld~-~~------------~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~ 235 (312)
T PRK12460 169 ALLPLVLGMILGNLDP-DM------------RKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFF 235 (312)
T ss_pred HHHHHHHHHHHhccch-hh------------HHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 5555777888886211 11 1122222334888899999999999999999999999999888888888
Q ss_pred HHHHHHHH
Q 004372 139 GIGSSFLL 146 (758)
Q Consensus 139 ~~~~~~~l 146 (758)
++.+..++
T Consensus 236 ~~~i~rll 243 (312)
T PRK12460 236 NIFADRLV 243 (312)
T ss_pred HHHHHHHh
Confidence 77776655
No 115
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=81.22 E-value=12 Score=40.12 Aligned_cols=112 Identities=19% Similarity=0.304 Sum_probs=72.0
Q ss_pred HHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 004372 276 VSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNI 355 (758)
Q Consensus 276 ~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~ 355 (758)
.++++=|+.|..+|..+|++-+... .+. .++-..+-++-+ .+++.+..++++.+|+-.+|.+=+.-|-.++.+.+.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllan-P~~--~llGaaAQ~Gif-~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLAN-PKT--LLLGAAAQFGIF-ATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhC-HHH--HHHHHHHHHhHH-HHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 3578888899999999999877643 232 222233444433 466667778999999999999888888777766653
Q ss_pred hc-c-CCccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Q 004372 356 GK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRA 395 (758)
Q Consensus 356 ~~-~-~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~ 395 (758)
.- + .+.+.-..|+-|- +.-.+-||+++.+-.+++|.
T Consensus 143 LAp~LlgpIaVaAYsYMa----LvPiiqPpimklLttkkeR~ 180 (360)
T PF03977_consen 143 LAPHLLGPIAVAAYSYMA----LVPIIQPPIMKLLTTKKERK 180 (360)
T ss_pred hhHHHHHHHHHHHHHHHH----HHhhhhhHHHHHhcCHHHHh
Confidence 22 1 1223333444442 23456788888876555443
No 116
>PRK12342 hypothetical protein; Provisional
Probab=80.86 E-value=3.5 Score=42.99 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=56.8
Q ss_pred EeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEE--e
Q 004372 591 VLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL--V 668 (758)
Q Consensus 591 v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~--v 668 (758)
+.+.=+|.|+-||+.|.|+.+ .+.++|++.+-+..... ++.+.+....-. ++-+...... -
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~~---------------~~l~r~alamGa-D~avli~d~~~~g 91 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQN---------------SKVRKDVLSRGP-HSLYLVQDAQLEH 91 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHhH---------------HHHHHHHHHcCC-CEEEEEecCccCC
Confidence 445557999999999999995 58899999998653221 224454444322 2222222111 1
Q ss_pred cChHHHHHH----HHhccCCCEEEEccCC-C------chhccccccC
Q 004372 669 RNTAETIAV----IREVSRCNLLLVGRMP-D------GELALALSTR 704 (758)
Q Consensus 669 ~~~~e~~~~----i~~~~~~DL~iVGr~~-~------~~~~~gl~~w 704 (758)
.|.-.|..+ ++.. +|||++-|+.. + ++++.++-+|
T Consensus 92 ~D~~ata~~La~~i~~~-~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 92 ALPLDTAKALAAAIEKI-GFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 233333333 4442 39999999997 1 4555555555
No 117
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=80.25 E-value=23 Score=39.13 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHc--ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC
Q 004372 36 QICLVILLTRGLAFILR--PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD 113 (758)
Q Consensus 36 ~~~lil~~~~~~~~ll~--~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d 113 (758)
.+.+.+.++..+...++ .+.+|.+++.+++|+++.... .+ .+.. .-+.+..+.++++.+-+++..+=..++
T Consensus 225 ~i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~-~~----~~~~--~id~~~i~~I~~~sL~~fl~~almsl~ 297 (368)
T PF03616_consen 225 LILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNIL-DK----TGKY--KIDRKTIDRISGISLDLFLAMALMSLK 297 (368)
T ss_pred HHHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHH-HH----hCcc--cCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444445555555555 356899999999999987421 11 1111 124567899999999999988888999
Q ss_pred chhHHhccchhHHHHHHHHHHHHHHH
Q 004372 114 PKSLRQTGKKALGIAIAGISLPFALG 139 (758)
Q Consensus 114 ~~~l~~~~~~~~~i~~~~~~i~~~~~ 139 (758)
+..+.+..-+.+.+-+.+.++..+..
T Consensus 298 l~~l~~~a~Plliil~~q~i~~~~f~ 323 (368)
T PF03616_consen 298 LWVLADYALPLLIILAVQTILMVLFA 323 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777777777665443
No 118
>PRK03818 putative transporter; Validated
Probab=79.86 E-value=37 Score=39.79 Aligned_cols=106 Identities=22% Similarity=0.335 Sum_probs=67.8
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHh----ccchhHHHHHHHHHH
Q 004372 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQ----TGKKALGIAIAGISL 134 (758)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~----~~~~~~~i~~~~~~i 134 (758)
.-|-+++|+++|- +++..+... -.| ......+.++|+.+|+..+|++--...+.. .+.+...+++.-.++
T Consensus 403 ~~G~L~~gl~~g~--~~~~~~~~~-~~p---~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~ 476 (552)
T PRK03818 403 AGGPLIVALILGR--IGSIGKLYW-FMP---PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAV 476 (552)
T ss_pred chHHHHHHHHHHh--ccCCCCcee-ecC---HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4578999999985 333222111 122 345677899999999999999987665543 355666677777777
Q ss_pred HHHHHHHHHHHHHhhhhcCCchhHHHHHHH-HHHhhccHHHHHHH
Q 004372 135 PFALGIGSSFLLRETISKGVDSTSFLVFMG-VALSITAFPVLARI 178 (758)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~-~~ls~Ts~~vv~~i 178 (758)
|.++++++++.+.+. .....+| ++-+.|++|.+...
T Consensus 477 ~~~~~~~~~~~~~~~--------~~~~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 477 PLLIVGILARMLAKM--------NYLTLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHHHHHHHcC--------CHHHHHHHHhccCCCcHHHHHH
Confidence 777777775544321 1233444 34577888877665
No 119
>COG2431 Predicted membrane protein [Function unknown]
Probab=78.91 E-value=28 Score=36.32 Aligned_cols=77 Identities=19% Similarity=0.300 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccC---chhHH-hccchhHHHHHHHHH
Q 004372 58 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELD---PKSLR-QTGKKALGIAIAGIS 133 (758)
Q Consensus 58 ~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d---~~~l~-~~~~~~~~i~~~~~~ 133 (758)
++.+.++.|+++|-..-.. ++ ..+...+..+.+++|.+|.++. ...-+ .-.|+....++...+
T Consensus 108 k~~~~vl~g~~~G~l~~~~--------~~-----~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~il 174 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSF--------LN-----FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLL 174 (297)
T ss_pred HHHHHHHHHHHHHHHhccc--------cc-----CchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHH
Confidence 6778888899888532211 11 1355678899999999999987 32111 223677777777766
Q ss_pred HHHHHHHHHHHHHH
Q 004372 134 LPFALGIGSSFLLR 147 (758)
Q Consensus 134 i~~~~~~~~~~~l~ 147 (758)
-..+-|.+.+.++.
T Consensus 175 ssliGG~iaa~~l~ 188 (297)
T COG2431 175 SSLIGGLIAAFLLD 188 (297)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666665554
No 120
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=78.26 E-value=14 Score=39.96 Aligned_cols=102 Identities=21% Similarity=0.217 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHcccCCC--hhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 35 LQICLVILLTRGLAFILRPLRQP--RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (758)
Q Consensus 35 ~~~~lil~~~~~~~~ll~~l~~P--~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~ 112 (758)
.++.+++.++...+++++++|+| .++|-++++.++.-..... .-.| +.+..++.+++=-.+|.++
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~------~~~P-------~~l~~~aqv~iG~~iG~~f 221 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPS------FSLP-------PWLVNAAQVLIGASIGSRF 221 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCC------CCCC-------HHHHHHHHHHHHHHHHccc
Confidence 34566667788889999999986 4556666665555321111 0111 3455666667778999999
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004372 113 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI 150 (758)
Q Consensus 113 d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~ 150 (758)
+.+.+|+..| .+..++...++-+.++...++.+....
T Consensus 222 ~~~~l~~~~~-~~~~~l~~~~~~l~~~~~~a~~l~~~~ 258 (318)
T PF05145_consen 222 TRETLRELRR-LLPPALLSTLLLLALCALFAWLLSRLT 258 (318)
T ss_pred cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887654 444555555556666666666666544
No 121
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=77.86 E-value=28 Score=38.71 Aligned_cols=115 Identities=13% Similarity=0.222 Sum_probs=77.8
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHH-HHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHH
Q 004372 234 LAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALV-EKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILT 312 (758)
Q Consensus 234 l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~-~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~ 312 (758)
..++.++..+|....+=-...|++...++-.+-+.- ..+.+++..+.+.+...-.|++++++.+.. ..|+.+.+..+.
T Consensus 20 if~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~-a~~palsLATlG 98 (574)
T COG3263 20 IFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRV-AAGPALSLATLG 98 (574)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHH-HhhhhHHHHHHH
Confidence 345556677888888777788998885321111111 245666667777777778899999888764 345544455555
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 004372 313 ACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVE 349 (758)
Q Consensus 313 ~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~ 349 (758)
.++.-.+....+.+.++++|-|++.+|.+.+.--..+
T Consensus 99 Vl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAA 135 (574)
T COG3263 99 VLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAA 135 (574)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHH
Confidence 5555666667778899999999999998776544433
No 122
>COG0679 Predicted permeases [General function prediction only]
Probab=77.20 E-value=1.1e+02 Score=32.92 Aligned_cols=138 Identities=13% Similarity=0.153 Sum_probs=80.0
Q ss_pred chhHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHH
Q 004372 244 GIHAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 322 (758)
Q Consensus 244 g~~~~lgaf~aGL~l~~-~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~ 322 (758)
=.+|.+=|+++|+++.. +-++...+.+-++.+ .+...|+-++..|+.++...... ............-.+...+..+
T Consensus 166 ~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~-~~~~~~~~~~~~kll~~Pl~~~ 243 (311)
T COG0679 166 LTNPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKG-SKPPIILIALSLKLLLAPLVAL 243 (311)
T ss_pred HhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 34667777777777763 233444555556666 48899999999999998844442 2233333333335667778888
Q ss_pred HHHHhcCCChHHHHHHHH-HHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 004372 323 VVSLSFKVPLREALALGI-LMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMA 387 (758)
Q Consensus 323 ~~~~~~~~~~~~~~~lgl-~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~ 387 (758)
+.++.++++..+...+=+ ...|-+....+++. +.+.-.+..-+.+.++. +.+.++.|.+..
T Consensus 244 ~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~---~~~~~~~laa~~i~ist-~ls~~t~p~~~~ 305 (311)
T COG0679 244 LVAKLLGLSGLALQVLVLLSAMPTAVNAYVLAR---QYGGDPRLAASTILLST-LLSLLTLPLLIL 305 (311)
T ss_pred HHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHH---HhCCChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 889999987766532222 13455555544443 34443334444444444 445555555443
No 123
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=75.97 E-value=25 Score=38.58 Aligned_cols=99 Identities=15% Similarity=0.197 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHcc--cCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhc
Q 004372 34 ILQICLVILLTRGLAFILRP--LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLE 111 (758)
Q Consensus 34 l~~~~lil~~~~~~~~ll~~--l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle 111 (758)
+.-+++.+.++..+..+++. +.+|.++..+.+|+++.... + ..+ .+.-..+..+.++++++-+++=.+=+.
T Consensus 224 ~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~----~-~~~--~~~v~~~~v~~ig~vsL~lflamALmS 296 (404)
T COG0786 224 LAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNIL----D-LLK--KYRVFRRAVDVIGNVSLSLFLAMALMS 296 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHH----H-Hhc--cccccHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555666666667764 45899999999999987421 1 111 111245678899999999988777777
Q ss_pred cCchhHHhccchhHHHHHHHHHHHHHHH
Q 004372 112 LDPKSLRQTGKKALGIAIAGISLPFALG 139 (758)
Q Consensus 112 ~d~~~l~~~~~~~~~i~~~~~~i~~~~~ 139 (758)
+.+-.+-..+-..+.+-..+.++..+..
T Consensus 297 lkLweL~~l~lpl~viL~vQ~i~m~lfa 324 (404)
T COG0786 297 LKLWELADLALPLLVILAVQTIVMALFA 324 (404)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 8888887777777777777766554433
No 124
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=75.88 E-value=3.7 Score=46.31 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCccEEEec---CCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC--CC--CcccccCCcce
Q 004372 515 HEDICTTAESKRAAIIILP---FHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL--GG--TTQVSASNVSY 587 (758)
Q Consensus 515 ~~dI~~~A~e~~adlIIlp---~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~--~~--~~~~~~~~~~~ 587 (758)
.++||.+|+|+++|+|++| ||.+..+... -++.++.+-+.=+-.-||..=++-|.+. +. ...+.-.+...
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~---L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNl 117 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKT---LHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNL 117 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHH---HHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCc
Confidence 5799999999999999999 7766433221 2334566666778889999999989863 21 12222334456
Q ss_pred EEEEeccC
Q 004372 588 TITVLFFG 595 (758)
Q Consensus 588 ~I~v~f~G 595 (758)
+|.+|+++
T Consensus 118 NIsIPVFs 125 (646)
T KOG2310|consen 118 NISIPVFS 125 (646)
T ss_pred ceeeeeEE
Confidence 88888763
No 125
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=74.53 E-value=0.94 Score=50.19 Aligned_cols=113 Identities=21% Similarity=0.363 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChh--HHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHH
Q 004372 230 LAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFA--NALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLA 307 (758)
Q Consensus 230 l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~--~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~ 307 (758)
++.++....+.+.++++.++|-.++|+++... .++ +.-.+..+.+ .++.+++.....|.++|...+... +....
T Consensus 5 i~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~--~~~~~ 80 (380)
T PF00999_consen 5 ILLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN--WRRAL 80 (380)
T ss_dssp --------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG------------
T ss_pred eehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc--ccccc
Confidence 34445555578999999999999999999852 222 1112334545 478888888899999999988643 33333
Q ss_pred HHHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHHHHHH
Q 004372 308 LVILTACLGKIVG-TFVVSL---SFKVPLREALALGILMNTKG 346 (758)
Q Consensus 308 ~ii~~~~~~K~~~-~~~~~~---~~~~~~~~~~~lgl~l~~kG 346 (758)
...+..++.-++. ++.... ..+.++.+++.+|..+++-.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp ---------------------------------TTHHHHTT--
T ss_pred ccccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 3333333333444 444443 46889999999888776544
No 126
>COG3329 Predicted permease [General function prediction only]
Probab=73.89 E-value=91 Score=33.13 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=70.4
Q ss_pred hhHHHHHHHHHHhcCCCCChhHHH--HHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHH
Q 004372 245 IHAMFGAFVVGVLVPKEGPFANAL--VEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTF 322 (758)
Q Consensus 245 ~~~~lgaf~aGL~l~~~~~~~~~l--~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~ 322 (758)
++|.+.-|+.|++++. +++++ -+.+-...+-.++--.-.--|+.+.-+.+.. .+..++.-+.+.++.-++..+
T Consensus 16 ~sP~llFf~~Gmlia~---~ksdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a--~v~~~~~~~aL~~li~~ia~f 90 (372)
T COG3329 16 LSPTLLFFILGMLIAA---FKSDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTA--MVLPVALGVALGFLIVFIAYF 90 (372)
T ss_pred ccchHHHHHHHHHHHH---HhccccCchHHHHHHHHHHHHHHhcccceeeecCCcch--hHHHHHHHHHHHHHHHHHHHH
Confidence 3788888999998873 11111 1122221111111112223344454444442 233333444555666677778
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHH
Q 004372 323 VVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIM 370 (758)
Q Consensus 323 ~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~l 370 (758)
+..++.|++..|+...+-.-+.-..+.++.+....+.--+..+-|...
T Consensus 91 ~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 91 LLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 888888999999999988777777777777766666555555555544
No 127
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=73.39 E-value=22 Score=37.62 Aligned_cols=131 Identities=16% Similarity=0.313 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCC-h--hHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGP-F--ANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 302 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~-~--~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~ 302 (758)
...-+.++|+.+.+++.+.++|..|=.++|.+.....| + ...+...+..+. ..+....+|+++.+.++..-..
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 34456778888899999999999999999999864322 2 234444444443 3455677899998887765444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccch
Q 004372 303 WGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLND 364 (758)
Q Consensus 303 ~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~ 364 (758)
|.+-..+.-++ +.-+ -.+..++..+.++...+..|+.++.-..+-+ .....+++.++.
T Consensus 87 iAipgAl~qia-~at~-lg~gL~~~lgws~~~glvfGlaLS~aSTVvl--lraLqEr~lidt 144 (408)
T COG4651 87 IAIPGALAQIA-LATL-LGMGLSSLLGWSFGTGIVFGLALSVASTVVL--LRALEERQLIDT 144 (408)
T ss_pred HhcchHHHHHH-HHHH-HHhHHHHHcCCCcccceeeeehhhhHHHHHH--HHHHHHhccccc
Confidence 43221111111 1111 1234466778888888888988877665433 223334454443
No 128
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=72.11 E-value=15 Score=35.20 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCC---CChhHHHHHHHHHHHHHHhHHHHHHHhcccccch---hhchhhhHHHHHHHHHHHHHHHHHHH
Q 004372 248 MFGAFVVGVLVPKE---GPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIA---TIQGLQSWGLLALVILTACLGKIVGT 321 (758)
Q Consensus 248 ~lgaf~aGL~l~~~---~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~---~l~~~~~~~~~~~ii~~~~~~K~~~~ 321 (758)
.-|+++.|+++.+- .|....+-.....+..++.+-+|...+|++.-.. .+.....+.......++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45778888887753 3333444445666667888999999999987643 33321112222232333444445566
Q ss_pred HHHHHhcCCChHH
Q 004372 322 FVVSLSFKVPLRE 334 (758)
Q Consensus 322 ~~~~~~~~~~~~~ 334 (758)
++..+++|++...
T Consensus 104 ~~~~~~~~~~~~~ 116 (154)
T TIGR01625 104 VALIKLLRINYAL 116 (154)
T ss_pred HHHHHHhCCCHHH
Confidence 6667788998753
No 129
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=71.45 E-value=21 Score=35.18 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=32.1
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 623 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 623 (758)
||++.+.||+|.--++.++.+.++..+.++.++++.
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999888777888888885
No 130
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=71.32 E-value=26 Score=38.05 Aligned_cols=110 Identities=22% Similarity=0.191 Sum_probs=62.5
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHH
Q 004372 29 ALPLAILQ-ICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (758)
Q Consensus 29 ~l~~ll~~-~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~ 107 (758)
+++....+ +.+.+.++.+.+.+.|++|+|.. ++++.++++-.+ .+ .+ .-..+.-..+..++..++--.
T Consensus 181 ~~~~~~~~~~~~l~~~~~~~g~l~~~lr~Pa~--~ll~~l~l~a~v-----~~---~~-~~~~~lP~wl~~va~~~iG~~ 249 (352)
T COG3180 181 WLPPVDWLILLLLILAALLGGLLGKLLRFPAP--TLLGPLLLGAIV-----HF---GG-GITIQLPAWLLAVAQALIGAL 249 (352)
T ss_pred cCchhhHHHHHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHh-----hc---cc-ceeeeCCHHHHHHHHHHHHHH
Confidence 33444444 66666777778889999998863 334444443211 00 00 001122344557788889999
Q ss_pred HhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004372 108 VGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETI 150 (758)
Q Consensus 108 ~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~ 150 (758)
+|.++|...++...|.... ++...+.-+++....++++.+..
T Consensus 250 IG~~f~~~~l~~~~r~~~~-~~v~ii~l~~~~~~~a~ll~~~~ 291 (352)
T COG3180 250 IGSRFDRSILREAKRLLPA-ILVSIIALMAIAAGMAGLLSWLT 291 (352)
T ss_pred HcccccHHHHHHhHhhcch-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999988876654443 33333333444444555555443
No 131
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=70.73 E-value=17 Score=37.96 Aligned_cols=108 Identities=17% Similarity=0.060 Sum_probs=64.7
Q ss_pred EeccCCcChHHHHHHHHHHhh-CCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEE---E
Q 004372 591 VLFFGGRDDREALACGARMAE-HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE---R 666 (758)
Q Consensus 591 v~f~GG~ddreAL~~a~rma~-~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e---~ 666 (758)
++..=.|.|+-|++.|.|+.+ ..+.++|++.+-+... ++.+.+.... .-++....+ -
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a-----------------~~~lr~aLAm--GaDraili~d~~~ 91 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA-----------------EEALREALAM--GADRAILITDRAF 91 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchhh-----------------HHHHHHHHhc--CCCeEEEEecccc
Confidence 344446889999999999999 6899999999986443 2233332222 223322222 2
Q ss_pred EecChHHHHHHHHhccC---CCEEEEccCC---Cchhc-cccccCCCCCccccchhhh
Q 004372 667 LVRNTAETIAVIREVSR---CNLLLVGRMP---DGELA-LALSTRSDCLELGPVGSLL 717 (758)
Q Consensus 667 ~v~~~~e~~~~i~~~~~---~DL~iVGr~~---~~~~~-~gl~~w~e~~eLG~iGd~l 717 (758)
.-.|+..|..+|.+... +||++.|+.. .+.++ ..+.+|-..|-++-+-++-
T Consensus 92 ~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~ 149 (260)
T COG2086 92 AGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIE 149 (260)
T ss_pred cCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEEEEE
Confidence 22345555566655322 9999999997 22222 3344444446666555554
No 132
>PRK09903 putative transporter YfdV; Provisional
Probab=70.26 E-value=82 Score=33.89 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=64.9
Q ss_pred cCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHH
Q 004372 54 LRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGIS 133 (758)
Q Consensus 54 l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~ 133 (758)
++-|.+++.+ +|+++.- +|. -.|..-.+.++.+++...-+-||..|..+....++.. ++.+...+.-.+
T Consensus 171 ~~nP~iia~~-~gl~~~l--~~i-------~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli 239 (314)
T PRK09903 171 AKEPVVWAPV-LATILVL--VGV-------KIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLI 239 (314)
T ss_pred HhchHHHHHH-HHHHHHH--cCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 4457777764 4455442 222 1344456789999999999999999999877665443 344433333333
Q ss_pred -HHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccHHHHHHHHHhccccCChhHH
Q 004372 134 -LPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAFPVLARILAELKLLTADVGR 191 (758)
Q Consensus 134 -i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~ 191 (758)
.|++. +.....+ +.+ ....-..+.++....++.+.++.+.--.+.+...
T Consensus 240 ~~P~i~-~~~~~~~----~l~----~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa 289 (314)
T PRK09903 240 LMPLAL-LLVGMAC----HLN----SEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGT 289 (314)
T ss_pred HHHHHH-HHHHHHc----CCC----cHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHH
Confidence 45433 2222222 111 1233445555665566666666554324554433
No 133
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=69.78 E-value=11 Score=36.25 Aligned_cols=122 Identities=16% Similarity=0.061 Sum_probs=65.5
Q ss_pred cChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEec---ChHH
Q 004372 597 RDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVR---NTAE 673 (758)
Q Consensus 597 ~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~---~~~e 673 (758)
+.|+|+|+.|+++++..+.+++++-+-+..+ .++.+.+...++ .-+++...+---. +.+.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~~----------------~~~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~ 77 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAEE----------------AAEALRKALAKY-GADKVYHIDDPALAEYDPEA 77 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC----------------HHHHHHHHHHST-TESEEEEEE-GGGTTC-HHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecchh----------------hHHHHhhhhhhc-CCcEEEEecCccccccCHHH
Confidence 7799999999999999999999998862111 133333333322 2234433322111 2344
Q ss_pred HHHHHHhcc---CCCEEEEccCC-C---chhccccccCCCCCccccchhhhhcCCCCc-eeEEEEeeeccccccccccc
Q 004372 674 TIAVIREVS---RCNLLLVGRMP-D---GELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQYSDRVFMNLASE 744 (758)
Q Consensus 674 ~~~~i~~~~---~~DL~iVGr~~-~---~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq~~~~~~~~~~~~ 744 (758)
...++.+.- ++|+++.|.+. . .+.++..-+| +.+.|... +.. ..-+.+.++.+.+......+
T Consensus 78 ~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~------~~v~~v~~---l~~~~~~~~~~r~~~gG~~~~~~~ 147 (164)
T PF01012_consen 78 YADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGA------PLVTDVTD---LEVEDGGLVVTRPVYGGKVVATVR 147 (164)
T ss_dssp HHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-------EEEEEEEE---EEEETTEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCC------CccceEEE---EEECCCeEEEEEECCCCEEEEEEE
Confidence 555554442 29999999987 2 3333333333 55555552 222 23356666665555444333
No 134
>COG2985 Predicted permease [General function prediction only]
Probab=69.56 E-value=21 Score=40.23 Aligned_cols=107 Identities=24% Similarity=0.314 Sum_probs=66.0
Q ss_pred hhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchh---HHhccchhHHHHHHHHHH
Q 004372 58 RVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKS---LRQTGKKALGIAIAGISL 134 (758)
Q Consensus 58 ~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~---l~~~~~~~~~i~~~~~~i 134 (758)
..-|.+++|++|| .+|.+.+.+ ++.|+ .....+.++|+++||=.+|++---+. +-..+-.....+..-.++
T Consensus 397 ~aGGpLivaLiLG--~ig~iGpl~-w~mP~---~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~v 470 (544)
T COG2985 397 NAGGPLIVALILG--FIGAIGPLT-WFMPP---GALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLV 470 (544)
T ss_pred ccccHHHHHHHHH--HhcccCceE-EEcCh---hHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHH
Confidence 4457788899988 455554422 22343 45778899999988877777654332 223444455556666677
Q ss_pred HHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HHhhccHHHHHHH
Q 004372 135 PFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARI 178 (758)
Q Consensus 135 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~i 178 (758)
|.++++.++.++.+. + +....|+ +-+.|++|..+-.
T Consensus 471 p~i~~~llg~~v~km---n-----~~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 471 PVIIVFLLGRYVLKM---N-----WLLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHHHHHhc---c-----HHHHhhHHhcCCCChHHHHHH
Confidence 777777777666542 2 2334444 4588998866554
No 135
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=68.14 E-value=24 Score=37.88 Aligned_cols=43 Identities=35% Similarity=0.640 Sum_probs=24.3
Q ss_pred HHHHHHHHhhcc--CchhHHhccchhHHHHHHHHHHHHH---HHHHHHHHH
Q 004372 101 LIFFMFLVGLEL--DPKSLRQTGKKALGIAIAGISLPFA---LGIGSSFLL 146 (758)
Q Consensus 101 l~~~lF~~Gle~--d~~~l~~~~~~~~~i~~~~~~i~~~---~~~~~~~~l 146 (758)
+.+||...|++- .++++|+.+++ +...+++.|++ +|..+++++
T Consensus 213 L~lFLLeMGl~A~~rL~~l~~~g~~---li~Fgi~~Pli~a~ig~~lg~~~ 260 (327)
T PF05982_consen 213 LCLFLLEMGLVAARRLRDLRKVGWF---LIAFGILMPLINALIGIGLGWLL 260 (327)
T ss_pred HHHHHHHhhHHHHHhhHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888865 34455555544 55555666655 444444444
No 136
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=62.70 E-value=9.7 Score=41.16 Aligned_cols=133 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHH
Q 004372 275 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-----FKVPLREALALGILMNTKGLVE 349 (758)
Q Consensus 275 ~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~-----~~~~~~~~~~lgl~l~~kG~~~ 349 (758)
+.++++=|+.|..+|..+|++-+... +...++-..+-++-|.....+..+ .+++.+|+-.+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlan---P~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLAN---PRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhC---HHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccC--CccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhccccccccccCCCCCceEEEEEe
Q 004372 350 LIVLNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 420 (758)
Q Consensus 350 l~~~~~~~~~--~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~elriLv~v 420 (758)
+.+.+..-.. +.+.-..|+-| -+.-.+-||+.+.+-.+++|.. |-.|..+-....||+-|+
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I------~M~~lr~VSk~eKIlFPi 270 (433)
T PRK15475 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTETERKI------RMVQLRTVSKREKILFPV 270 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCc------cCCCCCCCCccchhHHHH
No 137
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=62.23 E-value=1.9e+02 Score=29.69 Aligned_cols=83 Identities=11% Similarity=0.102 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 004372 302 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 381 (758)
Q Consensus 302 ~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~ 381 (758)
.|..+..-++++.+.-+++++..+++++.+.. +-..+.+|....=+...+..+.|-+.+-+-..++++-++-..+.
T Consensus 92 ~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g 167 (232)
T PRK04288 92 YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALG 167 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 45445555556666777888888899988764 34456789998888888888888777666666666666655556
Q ss_pred HHHHHHH
Q 004372 382 TPLVMAV 388 (758)
Q Consensus 382 ~plv~~l 388 (758)
+++++++
T Consensus 168 ~~llk~~ 174 (232)
T PRK04288 168 AKFLKLF 174 (232)
T ss_pred HHHHHHc
Confidence 6666654
No 138
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=61.93 E-value=2.4e+02 Score=30.61 Aligned_cols=238 Identities=16% Similarity=0.163 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHH------HHHHHHHh
Q 004372 36 QICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGL------IFFMFLVG 109 (758)
Q Consensus 36 ~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl------~~~lF~~G 109 (758)
++..+++...+.+.-.||---|...-.|-.|+++...-+.... +..........+..+-+.|+ .++.+-+|
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~---~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIG 80 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLM---DQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIG 80 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhc---ccccccCCCChHHHHHHHhhhcchhhHHHHHHHh
Confidence 3444455555556666666678888888889888743211100 00000001122333333332 23556678
Q ss_pred hccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH---hhccHHHHHHHHHhccccC
Q 004372 110 LELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL---SITAFPVLARILAELKLLT 186 (758)
Q Consensus 110 le~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l---s~Ts~~vv~~iL~elkll~ 186 (758)
--+|+.-+..+.|..+.=+.+++-+ | ..+..+..++.. . .++..+|++- .+|+.=+. .|+.+
T Consensus 81 AmtDFgpllanP~~~llGaaAQ~Gi-f-~t~~~A~~lGf~----~---~eAAsIgIIGgADGPtsIf~s------~~LAp 145 (360)
T PF03977_consen 81 AMTDFGPLLANPKTLLLGAAAQFGI-F-ATFLGAILLGFT----P---KEAASIGIIGGADGPTSIFVS------SKLAP 145 (360)
T ss_pred HHHhhHHHHhCHHHHHHHHHHHHhH-H-HHHHHHHHhCCC----H---HHhhHhhhcccCCCcHHHHHH------HhhhH
Confidence 8899999999988744333333221 1 122223333321 1 3444555444 33442222 24344
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHh-------cC-----------CCCCchHHHHHHHHHHHHHHHHHHHhchhHH
Q 004372 187 ADVGRMAMSAAAVNDVAAWILLALAVALS-------GS-----------GEPVEETYVCATLAAVLAAGFITDAIGIHAM 248 (758)
Q Consensus 187 s~~g~lals~a~i~D~~~~~ll~~~~~~~-------~~-----------~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~ 248 (758)
.-+|-+++++ ..-++++.... .. ++-.+...+.+-+....+++.+. =.-.+.
T Consensus 146 ~LlgpIaVaA--------YsYMaLvPiiqPpimklLttkkeR~I~M~~~r~Vsk~ekiiFpivv~~~~~ll~--P~a~pL 215 (360)
T PF03977_consen 146 HLLGPIAVAA--------YSYMALVPIIQPPIMKLLTTKKERKIRMKQLRPVSKTEKIIFPIVVTILVGLLL--PSAAPL 215 (360)
T ss_pred HHHHHHHHHH--------HHHHHHHhhhhhHHHHHhcCHHHHhccCCCCCCCChHHHHHHHHHHHHHHHHHc--cchHHH
Confidence 4455555433 22222222211 11 23233344555555555555542 244689
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhh
Q 004372 249 FGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQS 302 (758)
Q Consensus 249 lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~ 302 (758)
+|.+++|-.+.+ ...-+++.+..+.-...+.--+.-..+|...+-..+.+.++
T Consensus 216 ig~Lm~Gnl~rE-sgv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~t 268 (360)
T PF03977_consen 216 IGMLMFGNLLRE-SGVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQT 268 (360)
T ss_pred HHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHH
Confidence 999999999984 44444554444433333333333467787777666654443
No 139
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=61.86 E-value=10 Score=41.00 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHH
Q 004372 275 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-----FKVPLREALALGILMNTKGLVE 349 (758)
Q Consensus 275 ~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~-----~~~~~~~~~~lgl~l~~kG~~~ 349 (758)
+.++++=|+.|..+|..+|++-+... +...++-..+-++-|.....+..+ .+++.+|+-.+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlan---P~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLAN---PRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhC---HHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccC--CccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhccccccccccCCCCCceEEEEEe
Q 004372 350 LIVLNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 420 (758)
Q Consensus 350 l~~~~~~~~~--~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~elriLv~v 420 (758)
+.+.+..-.. +.+.-..|+-| -+.-.+-||+.+.+-.+++|.. |-.|..+-....||+-|+
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I------~M~~lr~VSk~eKIlFPi 270 (433)
T PRK15476 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKI------RMVQLRTVSKREKILFPV 270 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCc------cCCCCCCCCccchhHHHH
No 140
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=61.83 E-value=10 Score=40.99 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCChHHHHHHHHHHHHHHHHH
Q 004372 275 LVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS-----FKVPLREALALGILMNTKGLVE 349 (758)
Q Consensus 275 ~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~-----~~~~~~~~~~lgl~l~~kG~~~ 349 (758)
+.++++=|+.|..+|..+|++-+... +...++-..+-++-|.....+..+ .+++.+|+-.+|.+=+.-|-.+
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlan---P~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTs 207 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLAN---PRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTA 207 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhC---HHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchH
Q ss_pred HHHHHhhccC--CccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhccccccccccCCCCCceEEEEEe
Q 004372 350 LIVLNIGKDR--KVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRARVADYKHRTVERKNSKAQFRILACF 420 (758)
Q Consensus 350 l~~~~~~~~~--~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~~~~~~~r~i~~~~~~~elriLv~v 420 (758)
+.+.+..-.. +.+.-..|+-| -+.-.+-||+.+.+-.+++|.. |-.|..+-....||+-|+
T Consensus 208 IfvsskLAP~Llg~IaVAAYSYM----aLVPiIQPpimklLTTkkER~I------~M~~lr~VSk~eKIlFPi 270 (433)
T PRK15477 208 IYLSGKLAPELLGAIAVAAYSYM----ALVPLIQPPIMKALTTEKERKI------RMVQLRTVSKREKILFPV 270 (433)
T ss_pred HHhHhhhhhHhHHHHHHHHHHHH----HHHhcccchHHHhccCHHHhCc------cCCCCCCCCccchhHHHH
No 141
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=60.71 E-value=21 Score=35.00 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=42.9
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
+|+|-+.||+|.-..|.+..++.++.+.+++++++-..-. .+...+.+++.++.+++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----------~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----------EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----------CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----------cccchhHHHHHHHHHhc
Confidence 6899999999999999999999999999999999974322 12234567888887765
No 142
>COG0679 Predicted permeases [General function prediction only]
Probab=59.32 E-value=2e+02 Score=30.97 Aligned_cols=104 Identities=20% Similarity=0.321 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 247 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSL 326 (758)
Q Consensus 247 ~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~ 326 (758)
+++.-...|..+.+.....++-.+-+..++..+.+|.-+...=.+.+.+... .+...+...+..++.=++..++..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLA---DLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777777766666777777899999999999877766666655431 2333444444444455555566666
Q ss_pred hcCCChHHHH--HHHHHHHHHHHHHHHHH
Q 004372 327 SFKVPLREAL--ALGILMNTKGLVELIVL 353 (758)
Q Consensus 327 ~~~~~~~~~~--~lgl~l~~kG~~~l~~~ 353 (758)
..+.+.+++. .++...+.-|-+.+-++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~ 116 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVA 116 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHH
Confidence 7777777653 33444444555554333
No 143
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=59.30 E-value=23 Score=37.83 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=30.3
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 625 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 625 (758)
+.++.|.||+|+--.|.++.+.-..-+..+.++++-+.
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG 58 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTG 58 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecC
Confidence 55788999999999999999886544567888888643
No 144
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=59.09 E-value=56 Score=39.37 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=75.8
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEE
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYE 664 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~ 664 (758)
...||+|-..|+|.....+..|.|+|+.-+...|++++...+.... .++..+.+++ .+ ++.++.... .+
T Consensus 247 ~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~-----~~~~~~~l~~-~~-~Lae~lGae----~~ 315 (890)
T COG2205 247 ARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL-----SEKEARRLHE-NL-RLAEELGAE----IV 315 (890)
T ss_pred ccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc-----cHHHHHHHHH-HH-HHHHHhCCe----EE
Confidence 4479999999999999999999999999999999999986654320 0111222322 11 222222111 12
Q ss_pred EEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCceeEEEE
Q 004372 665 ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 730 (758)
Q Consensus 665 e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~SvLvv 730 (758)
...-.|-++.+....+..+..-+|+|+++.+ .|.+.-. |.+.|-|+..--. ..|-+|
T Consensus 316 ~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~-------rw~~~~~-~~l~~~L~~~~~~-idv~ii 372 (890)
T COG2205 316 TLYGGDVAKAIARYAREHNATKIVIGRSRRS-------RWRRLFK-GSLADRLAREAPG-IDVHIV 372 (890)
T ss_pred EEeCCcHHHHHHHHHHHcCCeeEEeCCCcch-------HHHHHhc-ccHHHHHHhcCCC-ceEEEe
Confidence 2222333444444444444889999999722 4643222 8888888864322 344444
No 145
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=58.67 E-value=2.2e+02 Score=29.14 Aligned_cols=109 Identities=13% Similarity=0.209 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 004372 267 ALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKG 346 (758)
Q Consensus 267 ~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG 346 (758)
.+..-+++-+-.+..|+| =+...+. ..|..+..-++++.+.-++..++.+++++.+.. +-..+.||.
T Consensus 63 ~i~~lLgPAtVAlAvPLY-------kq~~~ik--~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkS 129 (230)
T COG1346 63 WINFLLGPATVALAVPLY-------KQRHLIK--RHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKS 129 (230)
T ss_pred HHHHHHHHHHHHHhhHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhcccc
Confidence 333344444445555554 1233444 356656666667777778888889999998765 234467899
Q ss_pred HHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 004372 347 LVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAV 388 (758)
Q Consensus 347 ~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l 388 (758)
...-+...+..+.|-+.+-+-..++++-++.+.+.+++++++
T Consensus 130 vTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 130 VTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888887776666666666666666666665
No 146
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=58.61 E-value=17 Score=39.02 Aligned_cols=39 Identities=13% Similarity=0.099 Sum_probs=31.1
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA 625 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~ 625 (758)
.++++.|.||+|+--.|.+|.+.....+..+.++++-+.
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG 76 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTT 76 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCC
Confidence 367899999999999999999887544566778887543
No 147
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=58.36 E-value=2.9e+02 Score=30.40 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHH
Q 004372 246 HAMFGAFVVGVLVPKEGP-----FANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVG 320 (758)
Q Consensus 246 ~~~lgaf~aGL~l~~~~~-----~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~ 320 (758)
++.+=+.++|+++.--++ +...+.+-++.+. ....|+-.+.+|..+..........+......+++.++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg-~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLG-AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 455555556666542222 2245555566664 8889999999998876543221123333333456666666777
Q ss_pred HHHHHHhcCCChH
Q 004372 321 TFVVSLSFKVPLR 333 (758)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (758)
++...+.++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 7777777776554
No 148
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=57.91 E-value=32 Score=36.88 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=30.6
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 624 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 624 (758)
.++++.|.||+|+--.|.+|.+.-...+..+.++++.+
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDT 65 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDT 65 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeC
Confidence 47899999999999999999887554456677887754
No 149
>PRK10711 hypothetical protein; Provisional
Probab=56.74 E-value=2.4e+02 Score=29.06 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 004372 302 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 381 (758)
Q Consensus 302 ~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~ 381 (758)
.|..+..-+.++.+.-++++++.++.++.+.. +-..|.+|....=+...+..+.|-+.+-+-..++++-++-..+.
T Consensus 87 ~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g 162 (231)
T PRK10711 87 RWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFG 162 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH
Confidence 34444445556666677778888888888655 34446789988888888888887766555555555555555555
Q ss_pred HHHHHHH
Q 004372 382 TPLVMAV 388 (758)
Q Consensus 382 ~plv~~l 388 (758)
+++++++
T Consensus 163 ~~llk~~ 169 (231)
T PRK10711 163 HTLLNAM 169 (231)
T ss_pred HHHHHHc
Confidence 6666554
No 150
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=55.99 E-value=54 Score=31.91 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=31.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 624 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 624 (758)
+|++.+.||.|.--++.++.+...+.+.++.++++..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~ 37 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDH 37 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecC
Confidence 5889999999999999999998876677788888853
No 151
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=54.27 E-value=39 Score=36.17 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=68.3
Q ss_pred HHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHH
Q 004372 274 DLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV------PLREALALGILMNTKGL 347 (758)
Q Consensus 274 ~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~------~~~~~~~lgl~l~~kG~ 347 (758)
.+.++++=|+.|..+|..+|++-+.... + ..++-..+-++-+ .+++.+.++++ +.+|+-.+|.+=+.-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP-~--~~llGaaAQ~GiF-~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANP-R--TLLLGAAAQFGIF-ATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhCh-H--HHHHHHHHHhhHH-HHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 3456788899999999999998776432 2 2222233444433 34555666677 77999998887777777
Q ss_pred HHHHHHHhhc-c-CCccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhh
Q 004372 348 VELIVLNIGK-D-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARR 394 (758)
Q Consensus 348 ~~l~~~~~~~-~-~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~ 394 (758)
.++.+.+..- + .+.+.-..|+-|- +.-.+-||+++.+-.+++|
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsYMa----LvPiiqPpimklLttkkeR 179 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSYMA----LVPIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHH----HHhcccchHHHhhcChHHh
Confidence 6666554321 1 1223333344431 2245568888877654444
No 152
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=52.90 E-value=1.7e+02 Score=31.51 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 247 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVS 325 (758)
Q Consensus 247 ~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~-~~~~~~~~ii~~~~~~K~~~~~~~~ 325 (758)
.++.+.++|...|.-+..+..+. .|... .+.+.+.|...|++++..++... ..|..........++.=.+..+...
T Consensus 6 ~l~~ai~la~~~P~~g~~~~~~~--~~~~~-~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~ 82 (313)
T PF13593_consen 6 GLLLAILLAYLFPAPGAAGGVIK--PEYVI-KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLS 82 (313)
T ss_pred HHHHHHHHHHHcCcccccCCccc--hhhhH-HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888885333222221 12222 33356677778999998877643 3454444444444444444455554
Q ss_pred HhcCCChHHHHHHHHH
Q 004372 326 LSFKVPLREALALGIL 341 (758)
Q Consensus 326 ~~~~~~~~~~~~lgl~ 341 (758)
+...-...+.+..|+.
T Consensus 83 ~l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 83 RLFPAFLPPELALGLL 98 (313)
T ss_pred HHhhccCCHHHHHHHH
Confidence 4443212233555543
No 153
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=52.73 E-value=3.3e+02 Score=29.43 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhh
Q 004372 224 TYVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQ 301 (758)
Q Consensus 224 ~~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~ 301 (758)
..+.+-+....+++.+. =.-.+.+|.+++|-.+.+ ...-+++.+..+.-...+.--+.-..+|...+-..+.+.+
T Consensus 193 eKi~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrE-sGv~~rl~~taqn~l~nivTifLGl~vG~~~~A~~fL~~~ 267 (354)
T TIGR01109 193 EKILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRE-SGVVERLSKTASNELLNIVTILLGLSVGAKMRADKFLTPQ 267 (354)
T ss_pred chhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChH
Confidence 34555555555555542 234689999999999984 4444444444433333333333346778877766665433
No 154
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=51.87 E-value=16 Score=30.76 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=27.8
Q ss_pred EEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 004372 589 ITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 623 (758)
Q Consensus 589 I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 623 (758)
|++++.||+|+..++.++.+.+ ..+.+++++++.
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~~ 34 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVVV 34 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEeH
Confidence 5789999999999999999987 446677777763
No 155
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=51.25 E-value=75 Score=33.75 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=70.9
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
+++++..|-.+.... ..+.+.|++.|++.++..||.-..+.-...+ ...+........+++++||++=.|.|.
T Consensus 13 A~~~~yaV~Afn~~n--~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpv~lHlDH~~ 85 (281)
T PRK06806 13 ANQENYGVGAFSVAN--MEMVMGAIKAAEELNSPIILQIAEVRLNHSP-----LHLIGPLMVAAAKQAKVPVAVHFDHGM 85 (281)
T ss_pred HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhccCC-----hHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 444556666666655 5889999999999999999987654432211 123667778889999999999999985
Q ss_pred CCCccc-ccCCcceEEEEeccCCcChHHHHHHHHHH---hhCCCeEE
Q 004372 575 GGTTQV-SASNVSYTITVLFFGGRDDREALACGARM---AEHPGISF 617 (758)
Q Consensus 575 ~~~~~~-~~~~~~~~I~v~f~GG~ddreAL~~a~rm---a~~~~v~l 617 (758)
+- ... ...+...+..++=.-..+++|-++.++++ ++.-++.+
T Consensus 86 ~~-e~i~~Al~~G~tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~v 131 (281)
T PRK06806 86 TF-EKIKEALEIGFTSVMFDGSHLPLEENIQKTKEIVELAKQYGATV 131 (281)
T ss_pred CH-HHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 30 000 00011122233222224678888877655 45555553
No 156
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=51.12 E-value=33 Score=36.92 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=33.8
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCe-EEEEEEEee
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHPGI-SFIVIRFLL 624 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~v-~ltvvr~~~ 624 (758)
...+|||-|.||+|.-..|.++.+.|+..+- ++.|+.+--
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~ 66 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDW 66 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 3469999999999999999999999977666 788887753
No 157
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=49.77 E-value=3.9e+02 Score=29.39 Aligned_cols=241 Identities=13% Similarity=0.100 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhcccccCCch-hh-----hccc-cCC------CcHHHHHHHHHHH
Q 004372 34 ILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPSALGRSE-RF-----LQAV-FPP------KSQTVLDTLANLG 100 (758)
Q Consensus 34 l~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~~lg~~~-~~-----~~~~-fp~------~~~~~l~~l~~lg 100 (758)
.-++..+++...+.+.-.||--=|...--|-.|+++...-+...+ .. .+.. ..+ .....++.+-++|
T Consensus 22 ~~~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~g 101 (399)
T TIGR03136 22 ITRLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFT 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHH
Confidence 344455555555555555665568888888888888743221000 00 0000 000 0012333333333
Q ss_pred H------HHHHHHHhhccCchhHHhccchhHHHH-HHHH--HHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHH---h
Q 004372 101 L------IFFMFLVGLELDPKSLRQTGKKALGIA-IAGI--SLPFALGIGSSFLLRETISKGVDSTSFLVFMGVAL---S 168 (758)
Q Consensus 101 l------~~~lF~~Gle~d~~~l~~~~~~~~~i~-~~~~--~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~l---s 168 (758)
+ .++.+-+|-=+|+.-+..+.|..+..| .+++ .+++.. +..++.. . .++..+|++- .
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF~t~~~----A~~lGF~----~---~eAAsIgIIGgADG 170 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTFATLVI----GYYCGLT----P---GEAAAVGTIGGADG 170 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHHHHHHH----HHHcCCC----H---HHhhHHhhcccCCc
Confidence 2 234456788899999999998777633 3332 222322 2233221 1 3445555544 3
Q ss_pred hccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-------cC------------CCCCchHHHHHH
Q 004372 169 ITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALS-------GS------------GEPVEETYVCAT 229 (758)
Q Consensus 169 ~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~-------~~------------~~~~~e~~~~~~ 229 (758)
+|+.=+. .|+.+.-+|.+++++ ..-.+++.... .. ++-++...+.+-
T Consensus 171 PTaIf~s------~kLAp~Llg~IaVAA--------YsYMaLVPiiqPpimklLttkkER~I~M~~~~r~VSk~eKilFp 236 (399)
T TIGR03136 171 PMVLFAS------LILAKDLFVPISIIA--------YLYLSLTYAGYPYLIKLLVPKKYRGLEVEMEFPDVSQRAKFVFT 236 (399)
T ss_pred cHHHHHH------HhhhhHhHHHHHHHH--------HHHHHHHhcccchHHHhhcCHHHHcccCccCCCCCCccchhHHH
Confidence 3432222 244444555555432 22223322211 11 222233345555
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhH
Q 004372 230 LAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSW 303 (758)
Q Consensus 230 l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~ 303 (758)
+...++++.+. =.-.+.+|.+++|-.+.+ ... +++.+..+.-...+..-+.-..+|...+-..+.+.++.
T Consensus 237 ivv~i~~~ll~--P~a~pLig~Lm~GNllrE-sGv-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 237 IVAAMLLCLLL--PVASPLILSFFLGVAIKE-AQI-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred HHHHHHHHHHc--ccHHHHHHHHHHHHHHHH-hCc-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 55555555542 234689999999999984 444 66666555444344443445678888876666554443
No 158
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=48.97 E-value=29 Score=32.51 Aligned_cols=60 Identities=22% Similarity=0.214 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcC-CCceEEEecCCC
Q 004372 512 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHA-PCSVGILIDRGL 574 (758)
Q Consensus 512 ~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~A-pCsVgIlvdrg~ 574 (758)
....+.|.+++++++++.||+|...+. ||.........+.+.+++-++. +++| .++|-.+
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCCh
Confidence 578899999999999999999987553 5554334445788888888887 8998 5677644
No 159
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=48.44 E-value=4.1e+02 Score=31.26 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=46.2
Q ss_pred HHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------cCCChHHHHHHHHHHHHHHH
Q 004372 277 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLS---------FKVPLREALALGILMNTKGL 347 (758)
Q Consensus 277 ~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~---------~~~~~~~~~~lgl~l~~kG~ 347 (758)
..+++|....-.|+.+|...+... +..+..+.+.+++.-.+.+-...++ .++++.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n--~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFEN--LGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 357888888889999999888752 3333322222222222222111111 25699999999999998887
Q ss_pred HHHHH
Q 004372 348 VELIV 352 (758)
Q Consensus 348 ~~l~~ 352 (758)
++..-
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 76653
No 160
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=47.93 E-value=2.5e+02 Score=26.57 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhchh---HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHH--HhcccccchhhchhhhHH
Q 004372 230 LAAVLAAGFITDAIGIH---AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV--SSGLKTNIATIQGLQSWG 304 (758)
Q Consensus 230 l~~~l~~~~la~~~g~~---~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~--~~G~~~dl~~l~~~~~~~ 304 (758)
++..++.-.++..+++. +++|-++.=+.+--+.--.+.+.+--+.+. =-+|+||+ .+|.-..++.+.. ..|.
T Consensus 17 l~~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL--~~m~LfFVPagVGim~~~~ll~~-~~~~ 93 (141)
T PRK04125 17 AAIMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALT--NNIGFLFVPSGISVINSLGVMSQ-YPVQ 93 (141)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH--HHHHHHHhhhHhHHHHhHHHHHH-HHHH
Confidence 33333444555566653 666665543333311111222322222322 24667776 4444334444443 3444
Q ss_pred HHHHH
Q 004372 305 LLALV 309 (758)
Q Consensus 305 ~~~~i 309 (758)
+++.+
T Consensus 94 Il~~i 98 (141)
T PRK04125 94 IIGVI 98 (141)
T ss_pred HHHHH
Confidence 33333
No 161
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=47.90 E-value=3.3e+02 Score=27.93 Aligned_cols=129 Identities=16% Similarity=0.165 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHcccC----CChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhcc
Q 004372 37 ICLVILLTRGLAFILRPLR----QPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLEL 112 (758)
Q Consensus 37 ~~lil~~~~~~~~ll~~l~----~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~ 112 (758)
+.+.++.-.+..++.||++ .|-.++.++...+|=. +|. + +-++. ++.+.++.+ +|-.-..|..-+-=
T Consensus 11 l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~--~~i-~-Y~~Y~---~g~~~i~~l--LgPAtVAlAvPLYk 81 (230)
T COG1346 11 LLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLL--FGI-S-YEDYM---KGGQWINFL--LGPATVALAVPLYK 81 (230)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--cCC-C-HHHHh---cccHHHHHH--HHHHHHHHhhHHHH
Confidence 3333444444556667766 3555555544444332 121 1 11111 133444444 23333445556667
Q ss_pred CchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH-HhhccHHHHHHHHHhccc
Q 004372 113 DPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVA-LSITAFPVLARILAELKL 184 (758)
Q Consensus 113 d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~-ls~Ts~~vv~~iL~elkl 184 (758)
..+.+||+++....-.+.+.++.++.+..++.+++.. ..+..+.. -|+|. |+...+-+++|-
T Consensus 82 q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~---------~~~~~Sl~PkSvTT-piAm~vs~~iGG 144 (230)
T COG1346 82 QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLS---------PELILSLLPKSVTT-PIAMEVSESIGG 144 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------HHHHHHhccccccc-HHHHHHHHhcCC
Confidence 7899999999888777777777777777666666431 11222222 25664 777777777664
No 162
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=45.19 E-value=2.8e+02 Score=30.87 Aligned_cols=123 Identities=22% Similarity=0.311 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 246 HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVS 325 (758)
Q Consensus 246 ~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~ 325 (758)
++.+=+.+.|+++.+-+-....-...+.+.+++.++|+-....=++.|++.+... .. ..+..++.+.++-.+++.+..
T Consensus 26 ~~~vl~~~~~~~lsnlgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~-g~-~~l~~F~~~~~g~viG~~va~ 103 (378)
T PF05684_consen 26 PGAVLCYLLGMLLSNLGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRL-GG-RLLLAFLIGAVGTVIGAVVAF 103 (378)
T ss_pred CHHHHHHHHHHHHHHCCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHh-hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666553211111122445566677777777777778999887642 22 344555666777777777777
Q ss_pred HhcCCC-hHHHHHH-HHHHH--HHHHHHHHHHHhhccCCccchhhHHHHHHH
Q 004372 326 LSFKVP-LREALAL-GILMN--TKGLVELIVLNIGKDRKVLNDQVFAIMILM 373 (758)
Q Consensus 326 ~~~~~~-~~~~~~l-gl~l~--~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~ 373 (758)
+.++.. -.|...+ |.+.+ .-|.+-++....+++ .+++.+..++.+
T Consensus 104 ~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 104 LLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred HHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHC---CCHHHHHHHHHH
Confidence 666644 2333322 22221 234555544444433 345666655443
No 163
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.78 E-value=67 Score=32.83 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=48.9
Q ss_pred EEEEeEEecCCC-chHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEe
Q 004372 501 SVRPMTAISSMS-DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILI 570 (758)
Q Consensus 501 ~v~~~~~vs~~~-~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlv 570 (758)
...+++.+.|-+ ...++|.+.+.+.+.|.|++|-. +|. .......+.+++-++..-||-++.
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS-----~gv---t~~~~~~~v~~ik~~~~lPvilfP 77 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS-----DGV---TEENVDNVVEAIKERTDLPVILFP 77 (240)
T ss_pred cceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc-----ccc---cHHHHHHHHHHHHhhcCCCEEEec
Confidence 346889999999 99999999999999999999952 332 223477888888888888875554
No 164
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=43.14 E-value=91 Score=33.38 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHH
Q 004372 60 IAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALG 139 (758)
Q Consensus 60 v~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~ 139 (758)
+-.++.|+++|.. .+++.+.+-| -..+-..|+-|..|-.+|++.+.+.+-.-+.+++..+++.....
T Consensus 175 llP~iiG~iLGNL----D~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~ 241 (314)
T PF03812_consen 175 LLPIIIGMILGNL----DPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPL 241 (314)
T ss_pred HHHHHHHHHHhcC----CHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHH
Confidence 4456788888842 2222222222 22334567889999999999999999988888887777665555
Q ss_pred HHHHHHH
Q 004372 140 IGSSFLL 146 (758)
Q Consensus 140 ~~~~~~l 146 (758)
+....++
T Consensus 242 ~~~dr~i 248 (314)
T PF03812_consen 242 YLADRLI 248 (314)
T ss_pred HHHHHHH
Confidence 4444443
No 165
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=42.48 E-value=1.4e+02 Score=33.91 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=43.6
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHh-hCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 586 SYTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
.++|++.+.||+|.--.|.+..++. ..++.+++++++...-.. +.+.++++..++..++
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~-----------~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP-----------NADSWVKHCEQVCQQW 74 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc-----------chHHHHHHHHHHHHHc
Confidence 3689999999999998888888776 456889999999632211 1233457888887765
No 166
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=41.18 E-value=4.1e+02 Score=27.22 Aligned_cols=83 Identities=11% Similarity=0.155 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 004372 302 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 381 (758)
Q Consensus 302 ~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~ 381 (758)
.|..+...+.++.+.-+.++++.++.++.+.. +. ..+.+|....-+...+..+.|-..+-+-..++++-++-..+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i~--~Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGPE--II--ASLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--HH--HHhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555667777888888888743 33 356789988877777888777765555555555555555555
Q ss_pred HHHHHHH
Q 004372 382 TPLVMAV 388 (758)
Q Consensus 382 ~plv~~l 388 (758)
+++++++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 5666554
No 167
>PRK09903 putative transporter YfdV; Provisional
Probab=41.11 E-value=4.8e+02 Score=27.94 Aligned_cols=135 Identities=12% Similarity=0.067 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhcCC-CCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004372 246 HAMFGAFVVGVLVPK-EGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVV 324 (758)
Q Consensus 246 ~~~lgaf~aGL~l~~-~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~ 324 (758)
+|.+=+.++|+++.- +-++.+.+.+-++.+. +...|+-...+|+++....+.. .+. .....+...+.-.+.++..
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg-~~~~PlaL~~iG~~L~~~~~~~--~~~-~~~~~~~Kli~~P~i~~~~ 248 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIA-KANSGVAVFAAGLTLAAHKFEF--SAE-IAYNTFLKLILMPLALLLV 248 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccc--cHH-HHHHHHHHHHHHHHHHHHH
Confidence 455555666664432 2344456666666664 8899999999999886544321 111 1122233444445555555
Q ss_pred HHhcCCChHHHHHHHHH--HHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHc
Q 004372 325 SLSFKVPLREALALGIL--MNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 389 (758)
Q Consensus 325 ~~~~~~~~~~~~~lgl~--l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~ 389 (758)
+..++++..+.. ...+ ..|-+....+++ .+.|. +++..+..+....+.+.++-|++-++.
T Consensus 249 ~~~~~l~~~~~~-v~vl~aa~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 249 GMACHLNSEHLQ-MMVLAGALPPAFSGIIIA---SRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHcCCCcHHHH-HHHHHHcccHHHHHHHHH---HHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677544332 2222 233344444443 33343 455555555555666777778877654
No 168
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=40.50 E-value=4.3e+02 Score=27.22 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=43.3
Q ss_pred HHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHH-HHhhccHHHHHHHHHhc
Q 004372 104 FMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGV-ALSITAFPVLARILAEL 182 (758)
Q Consensus 104 ~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~-~ls~Ts~~vv~~iL~el 182 (758)
..|..-+--+.+.+||+++..+.--+.+.++.++.+..++.+++-. ..+..+. .-|+|. |+...+-++.
T Consensus 76 VALAvPLY~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~---------~~~~~Sl~pKSVTt-PIAm~is~~i 145 (232)
T PRK04288 76 IAFAIPLYKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLD---------NAVMASMLPQAATT-AIALPVSAGI 145 (232)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC---------HHHHHHHhhHhhhH-HHHHHHHHHh
Confidence 3344455567888999988877666777777777666666665421 1222222 236654 7777776666
Q ss_pred c
Q 004372 183 K 183 (758)
Q Consensus 183 k 183 (758)
|
T Consensus 146 G 146 (232)
T PRK04288 146 G 146 (232)
T ss_pred C
Confidence 6
No 169
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=39.14 E-value=5e+02 Score=27.59 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHH
Q 004372 225 YVCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWG 304 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~ 304 (758)
.+.+-++..+..+++. =...+.+|.+.+|=.+. +...-+++.+..+.-.-.+.--+.-..+|.+.+-..+.+.++..
T Consensus 209 kIlFPiv~~i~~~ll~--P~a~PLvGmlmfGNL~r-E~GVv~RLs~taqn~linivTI~LgLsVGsk~~ad~FL~~~tL~ 285 (375)
T COG1883 209 KILFPIVLLILVALLL--PSAAPLVGMLMFGNLLR-ESGVVERLSDTAQNELINIVTIFLGLSVGSKMRADKFLTPQTLG 285 (375)
T ss_pred hhhhhHHHHHHHHHHc--cchhHHHHHHHHhHHHH-HhcHHHHHHHHHHHHHHHHHHHHHhhccccccchhhcCCHHHHH
Confidence 3444455555555442 23468999999999998 55555666555444333444444456788888766665544443
No 170
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=38.66 E-value=2.7e+02 Score=30.52 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHHHccc-CCChhHHHHHHHHhhcccccCCchhhhccccCCCcH---HHHH-HHHHHHHHHHHHHHhhc-cCchhHHhcc
Q 004372 48 AFILRPL-RQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQ---TVLD-TLANLGLIFFMFLVGLE-LDPKSLRQTG 121 (758)
Q Consensus 48 ~~ll~~l-~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~---~~l~-~l~~lgl~~~lF~~Gle-~d~~~l~~~~ 121 (758)
+.+++.+ ++|..+-+++.|+++-- +|.. |++.. .... ++..--...+++-+|+. +|++++.+..
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gll--------p~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~ 264 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLV--------PKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAAL 264 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHh
Confidence 4444444 68999999999999873 3433 22222 2222 33333333355557886 8999998877
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 122 K-KALGIAIAGISLPFALGIGSSFLLR 147 (758)
Q Consensus 122 ~-~~~~i~~~~~~i~~~~~~~~~~~l~ 147 (758)
. ..+.+.+.+++--.+.++.++.+++
T Consensus 265 t~~~vviiv~~Vlg~ii~s~lvGKllG 291 (347)
T TIGR00783 265 SWQFVVICLSVVVAMILGGAFLGKLMG 291 (347)
T ss_pred chhHhhhHHHHHHHHHHHHHHHHHHhC
Confidence 3 3333334343333444455555554
No 171
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.45 E-value=75 Score=30.80 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=31.0
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEEee
Q 004372 588 TITVLFFGGRDDREALACGARMAEHP--GISFIVIRFLL 624 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~~ 624 (758)
||++.+.||+|.--++.++.+..++. +.+++.+++-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998887654 77888888763
No 172
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=38.44 E-value=4.4e+02 Score=26.78 Aligned_cols=82 Identities=11% Similarity=0.245 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHH
Q 004372 302 SWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMT 381 (758)
Q Consensus 302 ~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~ 381 (758)
.|..+...+..+.+.-+..+++.++.++++.. +...+.+|....-+...+..+.|-..+-+-..++++-++-..+.
T Consensus 76 ~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g 151 (215)
T PF04172_consen 76 NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLG 151 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhH
Confidence 44445555556666667778888888888654 23445789987777777777777766555555555555555555
Q ss_pred HHHHHH
Q 004372 382 TPLVMA 387 (758)
Q Consensus 382 ~plv~~ 387 (758)
++++++
T Consensus 152 ~~llk~ 157 (215)
T PF04172_consen 152 PPLLKL 157 (215)
T ss_pred HHHHhH
Confidence 566655
No 173
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=37.89 E-value=1.8e+02 Score=29.80 Aligned_cols=35 Identities=14% Similarity=-0.071 Sum_probs=27.4
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 624 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 624 (758)
.++++.|.||+|+--.|.++.+.. ++. +.|+.+.+
T Consensus 26 ~~~~~s~S~Gkds~VlL~l~~~~~-~~~--i~vv~vDT 60 (226)
T TIGR02057 26 HGLVQTSAFGIQALVTLHLLSSIS-EPM--IPVIFIDT 60 (226)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhh-CCC--CCEEEEeC
Confidence 479999999999999999999976 233 55666654
No 174
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=36.98 E-value=65 Score=30.24 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 514 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 514 m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
..+.|.+++++++++.||+|...+ .+|.........+.+.+++-++-+++| +++|--+
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~--~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLN--MDGTEGPRTERARKFANRLEGRFGLPV-VLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCC--CCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 468899999999999999998764 355543333456778888877778998 6777744
No 175
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=36.96 E-value=2e+02 Score=30.73 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=48.6
Q ss_pred hHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHH
Q 004372 59 VIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFAL 138 (758)
Q Consensus 59 iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~ 138 (758)
.+-.++.|+++|.. .+.+.+.+-| -..+-..|+-|..|-.+|++.+.+.+-.-+.+++...+++...
T Consensus 174 ~ilPlliG~ilGNL----D~~~r~fl~~---------~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~ 240 (314)
T TIGR00793 174 AVLPFLVGFALGNL----DPELRDFFSK---------AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIP 240 (314)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHhcc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 34456788888852 1222222222 1223356788999999999999999888888888777766655
Q ss_pred HHHHHHHH
Q 004372 139 GIGSSFLL 146 (758)
Q Consensus 139 ~~~~~~~l 146 (758)
.+....++
T Consensus 241 ~~~~dr~~ 248 (314)
T TIGR00793 241 LILADKFI 248 (314)
T ss_pred HHHHHHHh
Confidence 55444444
No 176
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=34.93 E-value=2.3e+02 Score=27.61 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=56.8
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 494 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 494 (758)
|+++++.+..+...++.++....+. .+..+.++|+-. +... .+++-.+.++.+
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~---~~~~v~~v~vd~--g~~~----------------------~~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPK---LKIRLIAAHVDH--GLRP----------------------ESDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH---cCCCEEEEEeCC--CCCh----------------------hHHHHHHHHHHH
Confidence 5889999999899999888776533 345578888742 1100 011223344555
Q ss_pred hhccceEEEEeEEec----C--CCchH--------HHHHHHHHhcCccEEEecCCc
Q 004372 495 QQLSRVSVRPMTAIS----S--MSDMH--------EDICTTAESKRAAIIILPFHK 536 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs----~--~~~m~--------~dI~~~A~e~~adlIIlp~h~ 536 (758)
++..+++.+....-- + ..++. +-+.+.|++.+++.|+.|.|.
T Consensus 54 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~ 109 (189)
T TIGR02432 54 CKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHA 109 (189)
T ss_pred HHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 555455443322210 0 01122 467778999999999999974
No 177
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=34.68 E-value=6.4e+02 Score=27.48 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=33.3
Q ss_pred HHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHh
Q 004372 50 ILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVG 109 (758)
Q Consensus 50 ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~G 109 (758)
+...+|+|+++.-+++|..++-++.=...-..|-+ -+++.--.+.-+.+|..+.++..|
T Consensus 54 ii~~~RlPRil~a~l~G~~LalsG~llQ~l~rNpL-a~P~iLGissGA~lg~~~~~~~~~ 112 (330)
T PRK10440 54 VVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPL-GSPDVMGFNTGAWSGVLVAMVLFG 112 (330)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCcHhhHHHHHHHHHHHHHHHHh
Confidence 45567999999999999999865421111011111 122333445556677666554433
No 178
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=34.29 E-value=3.3e+02 Score=25.71 Aligned_cols=27 Identities=15% Similarity=-0.033 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCC
Q 004372 31 PLAILQICLVILLTRGLAFILRPLRQP 57 (758)
Q Consensus 31 ~~ll~~~~lil~~~~~~~~ll~~l~~P 57 (758)
..++.|+.+++.+..+...+.+-+++|
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lP 33 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIP 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 356788888888888777777777755
No 179
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=33.99 E-value=4.5e+02 Score=25.58 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=51.9
Q ss_pred hchhHHHHHHHHHHhcCCCC---ChhHHHHHHHHHHHHHHhHHHHHHHhcccccchh---hchhhhHHHHHHHHHHHHHH
Q 004372 243 IGIHAMFGAFVVGVLVPKEG---PFANALVEKVEDLVSGIFLPLYFVSSGLKTNIAT---IQGLQSWGLLALVILTACLG 316 (758)
Q Consensus 243 ~g~~~~lgaf~aGL~l~~~~---~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~---l~~~~~~~~~~~ii~~~~~~ 316 (758)
+.+...-|+.+.|+++.+-. |.. +......+..++.+-+|...+|++.-..- +.. ..+.....- ++.++.
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~-~G~~~~~~~-~~i~~~ 96 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKR-GGLKLLLLG-VIITLV 96 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHH-HHHHHH
Confidence 34445568888888887531 111 34455556678888899999999876433 332 233333333 333334
Q ss_pred HHHHHHHHHH-hcCCChHH
Q 004372 317 KIVGTFVVSL-SFKVPLRE 334 (758)
Q Consensus 317 K~~~~~~~~~-~~~~~~~~ 334 (758)
-.+.++..++ ++|++...
T Consensus 97 ~~~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 97 PLLIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 4455566666 88988654
No 180
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=33.53 E-value=4.5e+02 Score=25.40 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=27.5
Q ss_pred hhHHHHHHHHhhcccc---cCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhh
Q 004372 58 RVIAEITGGILLGPSA---LGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGL 110 (758)
Q Consensus 58 ~iv~~ilaGiilGP~~---lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gl 110 (758)
.-+..+++|+++||.. .+...+..+.+++... .++-.|.++--|.+|+
T Consensus 34 ~~i~~vlaavllGP~~g~~~a~i~~ll~~l~~~g~-----~~afpg~~~~a~laGl 84 (160)
T TIGR02359 34 QHFVNVIAGVLLGPWYALAVAFIIGLLRNTLGLGT-----VLAFPGGMPGALLAGL 84 (160)
T ss_pred hHHHHHHHHHHHchHHHHHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHHHH
Confidence 5678899999999943 2223333333333111 1123366667778887
No 181
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=33.13 E-value=2.6e+02 Score=33.41 Aligned_cols=27 Identities=11% Similarity=0.073 Sum_probs=15.4
Q ss_pred ccCCCCCCcchHHHHHHHHHHHHHHHHH
Q 004372 20 FQGDSPLDFALPLAILQICLVILLTRGL 47 (758)
Q Consensus 20 ~~~~~p~~~~l~~ll~~~~lil~~~~~~ 47 (758)
++.-||+ ...+.+--..++.++++.++
T Consensus 460 L~sl~p~-s~al~~AAiaGV~LF~SglI 486 (643)
T PF10136_consen 460 LHSLDPF-SPALLYAAIAGVWLFLSGLI 486 (643)
T ss_pred HHhcCcc-ccHHHHHHHHHHHHHHHHHH
Confidence 4457788 45455555555666555544
No 182
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=32.98 E-value=4.1e+02 Score=25.76 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=52.6
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 494 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 494 (758)
+|++++.+-.+.-.++.++..+... .+..+.++|+=.-.... +++-.+..+++
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~---~~~~~~~~~vdh~~~~~------------------------s~~~~~~v~~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRR---NGIKLIAVHVDHGLREE------------------------SDEEAEFVEEI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTT---TTTEEEEEEEE-STSCC------------------------HHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh---cCCCeEEEEEecCCCcc------------------------cchhHHHHHHH
Confidence 6899999888888899999988854 66788999986422211 12223334455
Q ss_pred hhccceEEEEeEEe-c--CCCch--------HHHHHHHHHhcCccEEEecCCc
Q 004372 495 QQLSRVSVRPMTAI-S--SMSDM--------HEDICTTAESKRAAIIILPFHK 536 (758)
Q Consensus 495 ~~~~~v~v~~~~~v-s--~~~~m--------~~dI~~~A~e~~adlIIlp~h~ 536 (758)
.+..+++......- . +..+. ++-+.+.|++.+++.|++|-|.
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 54 CEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp HHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred HHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 55544544332221 0 11121 1345578899999999999884
No 183
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=32.51 E-value=4.1e+02 Score=32.61 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccH--HHH
Q 004372 98 NLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAF--PVL 175 (758)
Q Consensus 98 ~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~--~vv 175 (758)
.+-+-++....|++.|+..+.+ +.............-++.+...+.+.. + ++ ..++.++..++.-.. -++
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k--~--p~---~~~l~l~~lm~~kgl~el~~ 384 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCK--L--PL---RDSLALGLLMSTKGLVELIV 384 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhc--C--ch---hHHHHHHHHHHhhhHHHHHH
Confidence 3455567778899999999988 222222222222222333333443221 2 12 456777777765443 234
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHH
Q 004372 176 ARILAELKLLTADVGRMAMSAAAVNDVAAWI 206 (758)
Q Consensus 176 ~~iL~elkll~s~~g~lals~a~i~D~~~~~ 206 (758)
...-.|.|..+++.-.+..-.++++-.+.-.
T Consensus 385 ~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~ 415 (769)
T KOG1650|consen 385 LNTGLDRKILSDEGFTVMVLMALVSTFITPP 415 (769)
T ss_pred HHHHhhcCCcccchHHHHHHHHHHHHhhHHH
Confidence 4455677777777666665555555444433
No 184
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=32.33 E-value=90 Score=27.97 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=33.2
Q ss_pred CCCCcccCCCCCCcchHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhccc
Q 004372 15 TSNGVFQGDSPLDFALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLGPS 72 (758)
Q Consensus 15 ~~~g~~~~~~p~~~~l~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilGP~ 72 (758)
+..|...-..|+++++|.=.+.-.+..+-..++-.++-...--.+.-.++.|++.||+
T Consensus 53 ~~~g~i~~RTPlTHT~pRSv~WGli~slp~i~~l~~~~~~~~~~il~~Ll~Gvl~GPS 110 (114)
T PF06939_consen 53 TRYGYIPVRTPLTHTLPRSVLWGLIPSLPLIILLYYYYGYFNYIILLALLSGVLVGPS 110 (114)
T ss_pred cCCCcceecCCCccCcchhhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhhhccchH
Confidence 4455556688999999864443333222111122222222334556678899999996
No 185
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=31.16 E-value=1.6e+02 Score=31.26 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=53.8
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
+++++..|-.+.... ..+.+.|++.|++.++..||.-..+.-..-| ...+....+...+++++||++=.|.|.
T Consensus 13 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~a~~~~VPValHLDH~~ 85 (284)
T PRK12737 13 AQAEGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSYAG-----TDYIVAIAEVAARKYNIPLALHLDHHE 85 (284)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333555565666655 5889999999999999999976644322212 123677888999999999999999985
No 186
>PRK06801 hypothetical protein; Provisional
Probab=30.81 E-value=2.2e+02 Score=30.33 Aligned_cols=115 Identities=15% Similarity=0.155 Sum_probs=71.1
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
+++++..|-.+.... ..+...|++.|+|.++..||.-..+.-...+ -..+....+...++++-||++=.|.|.
T Consensus 13 A~~~~yaV~Afn~~n--~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~-----~~~~~~~~~~~a~~~~vpV~lHlDH~~ 85 (286)
T PRK06801 13 ARKHGYALGAFNVLD--SHFLRALFAAAKQERSPFIINIAEVHFKYIS-----LESLVEAVKFEAARHDIPVVLNLDHGL 85 (286)
T ss_pred HHHCCceEEEEeeCC--HHHHHHHHHHHHHHCCCEEEEeCcchhhcCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 344555566666655 5889999999999999999987755432222 134778888999999999999999985
Q ss_pred CCCcccccCCcceEEEEeccCC-cChHHHHHHHHHH---hhCCCeEE
Q 004372 575 GGTTQVSASNVSYTITVLFFGG-RDDREALACGARM---AEHPGISF 617 (758)
Q Consensus 575 ~~~~~~~~~~~~~~I~v~f~GG-~ddreAL~~a~rm---a~~~~v~l 617 (758)
.-..-....+....-.+ |.|- -+.+|-++..+++ |+..++.+
T Consensus 86 ~~e~i~~Ai~~GftSVm-~D~S~l~~eeNi~~t~~v~~~a~~~gv~V 131 (286)
T PRK06801 86 HFEAVVRALRLGFSSVM-FDGSTLEYEENVRQTREVVKMCHAVGVSV 131 (286)
T ss_pred CHHHHHHHHHhCCcEEE-EcCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 30000000011112222 2332 2457777776554 66667644
No 187
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=30.71 E-value=1e+02 Score=35.76 Aligned_cols=71 Identities=18% Similarity=0.241 Sum_probs=38.5
Q ss_pred HHhHHHHHHHhcccccchhhchhhhHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Q 004372 278 GIFLPLYFVSSGLKTNIATIQGLQSWGLLALVI-------LTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVEL 350 (758)
Q Consensus 278 ~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii-------~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l 350 (758)
.+++|---.-.|.+++-..+.....-.....+. ++....|+.+. .-..++++++|++.+|.+++.---+..
T Consensus 103 ~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVtv 180 (575)
T KOG1965|consen 103 LVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVTV 180 (575)
T ss_pred HHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchHH
Confidence 566666666778888876665321111111111 11122222221 123457899999999988876554444
No 188
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=30.29 E-value=82 Score=29.14 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=26.1
Q ss_pred EEeEEecCCCchHHHHHHHHHhcCccEEEecCCccc
Q 004372 503 RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 538 (758)
Q Consensus 503 ~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~ 538 (758)
.-.-++-|...||..|.++|++-++|++|-|.....
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 344455588999999999999999999999997654
No 189
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=30.05 E-value=8.6e+02 Score=28.82 Aligned_cols=55 Identities=11% Similarity=0.059 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 158 SFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVA 213 (758)
Q Consensus 158 ~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~ 213 (758)
.++--++..+-.-+.|+-..+.++.- ....+|.=.+..++..=+++++++.+.+.
T Consensus 404 ~eA~~LA~~LraGaLpa~~~i~~~~t-VgpsLG~~~i~~gl~A~iig~vlV~lFm~ 458 (604)
T PRK12933 404 QEAQQLALLLRAGSLTAPVTIVEERT-IGPSLGAENIENGFAALALGMGITLLFMA 458 (604)
T ss_pred HHHHHHHHHHhcCCCCCCeEEEEeee-cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666776666666555554444 56678887777777766666655554443
No 190
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=29.90 E-value=13 Score=38.87 Aligned_cols=112 Identities=21% Similarity=0.325 Sum_probs=65.0
Q ss_pred HHHhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHh-
Q 004372 277 SGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNI- 355 (758)
Q Consensus 277 ~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~- 355 (758)
++++=++.|..+|..+|++-+..... .+++=..+-++-| .+++.+...++..+|+-.+|.+=+.-|-.++.+.+.
T Consensus 83 ~~i~PllIFmGvGAmTDFgpllanPk---tllLGaAAQ~GIF-~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~L 158 (375)
T COG1883 83 SGIFPLLIFMGVGAMTDFGPLLANPK---TLLLGAAAQFGIF-ATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNKL 158 (375)
T ss_pred cCcccHHHHhccchhcccchhhcCcH---HHHhhhHHHhchH-HHHHHHHHhCCCHhhhhheeeeccCCCCceEEecccc
Confidence 46788888999999999987754321 1111122333333 355667788999999999998766666655544331
Q ss_pred hcc-CCccchhhHHHHHHHHHHHHHHHHHHHHHHcchhhhhh
Q 004372 356 GKD-RKVLNDQVFAIMILMAVVTTFMTTPLVMAVYKPARRAR 396 (758)
Q Consensus 356 ~~~-~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~~~~~~~ 396 (758)
+.+ .+.+.-..|+-| + +.-.+-||+.+.+-.+++|..
T Consensus 159 AP~Ll~~iAvAAYSYM---A-LVPiIQPpimkaLTt~~ERkI 196 (375)
T COG1883 159 APELLGAIAVAAYSYM---A-LVPIIQPPIMKALTTKEERKI 196 (375)
T ss_pred CHHHHHHHHHHHHHHH---H-HhhhcccHHHHHhcCHHHHHh
Confidence 111 012222234433 1 224556888887766555433
No 191
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.62 E-value=1.8e+02 Score=31.01 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=53.1
Q ss_pred hccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 496 QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 496 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
++++..|-.+...+ ..+...+++.|+|.++..||.-..+.-...| -..+..+.+...+++++||++=.|.|.
T Consensus 14 ~~~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPValHLDH~~ 85 (284)
T PRK12857 14 EKGGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKYAG-----IEYISAMVRTAAEKASVPVALHLDHGT 85 (284)
T ss_pred HHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 33445555666655 5889999999999999999987654432222 123677788889999999999999985
No 192
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=28.99 E-value=1.1e+02 Score=29.27 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.5
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 623 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 623 (758)
++++-|.||+|..-+|.++.+...+. .++.+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~d 32 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFID 32 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEe
Confidence 57899999999999999999998873 455553
No 193
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=28.57 E-value=1.9e+02 Score=30.72 Aligned_cols=73 Identities=11% Similarity=0.075 Sum_probs=54.0
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
+++++..|-.+.... ..+.+.|++.|++.++..||.-..+.-..-+ ...+....+...++++.||++=-|.|.
T Consensus 11 A~~~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~-----~~~~~~~~~~~a~~~~VPValHLDHg~ 83 (282)
T TIGR01858 11 AQAGGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAG-----TEYIVALCSAASTTYNMPLALHLDHHE 83 (282)
T ss_pred HHHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333455555666655 5889999999999999999987654422211 223677888999999999999999985
No 194
>COG3371 Predicted membrane protein [Function unknown]
Probab=28.10 E-value=3.8e+02 Score=26.35 Aligned_cols=61 Identities=16% Similarity=0.207 Sum_probs=41.5
Q ss_pred ccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHHHhhccCchhHHhccchhH
Q 004372 53 PLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFLVGLELDPKSLRQTGKKAL 125 (758)
Q Consensus 53 ~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~ 125 (758)
|.+-+.-.-++++|+.+.- .| +||.+. ....+....+.+++|.+.+-+.....+++++...
T Consensus 73 k~~~~g~~ll~is~lfLaL--VG--------VFpEgt--~pH~~vs~~ffll~fi~~~i~si~~~~~~~~~~~ 133 (181)
T COG3371 73 KIENYGGALLIISGLFLAL--VG--------VFPEGT--PPHVFVSILFFLLSFIAMLIYSIGRLLRNRSGFG 133 (181)
T ss_pred HhhhcchHHHHHHHHHHHh--ee--------eCCCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 5566666667778877662 22 355443 4567778888889999999888888777555443
No 195
>PRK04148 hypothetical protein; Provisional
Probab=27.86 E-value=67 Score=30.08 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=28.3
Q ss_pred EEecCCCchHHHHHHHHHhcCccEEEecCCccc
Q 004372 506 TAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 538 (758)
Q Consensus 506 ~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~ 538 (758)
.++-|..+|+..|.++|++.++|++|-|..+..
T Consensus 82 ysirpp~el~~~~~~la~~~~~~~~i~~l~~e~ 114 (134)
T PRK04148 82 YSIRPPRDLQPFILELAKKINVPLIIKPLSGEE 114 (134)
T ss_pred EEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 344477899999999999999999999997653
No 196
>PRK14695 serine/threonine transporter SstT; Provisional
Probab=27.81 E-value=5.3e+02 Score=27.92 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=24.5
Q ss_pred hhccHHHHHHHHHhccccCChhHHHHH--HHHHHHHHHHH
Q 004372 168 SITAFPVLARILAELKLLTADVGRMAM--SAAAVNDVAAW 205 (758)
Q Consensus 168 s~Ts~~vv~~iL~elkll~s~~g~lal--s~a~i~D~~~~ 205 (758)
|....|+..+.++++| .+.+..+.++ ++++--|..++
T Consensus 179 S~AtLP~~~~~~e~lG-v~~~ia~fvlPLGatinmdG~ai 217 (319)
T PRK14695 179 SATNIPVNMKLCHDLG-LNPDTYSVSIPLGSTINMAGVAI 217 (319)
T ss_pred hHHHHHHHHHHHHHcC-cCcccEeeeeccchhhCCCchHH
Confidence 4455688777777777 4777666654 56666776654
No 197
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=26.98 E-value=2.2e+02 Score=30.09 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=43.5
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcC
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTS 656 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~ 656 (758)
++|+|-+.||+|.--+|.+..++.++ +++.++++...-.. +.+.+.+...++.....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~~~~-----------~~~~~~~~~~~~~~~~~ 78 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHGLRG-----------YSDQEAELVEKLCEKLG 78 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCCCCC-----------ccchHHHHHHHHHHHhC
Confidence 69999999999999999999999988 88999988643211 12345677777776653
No 198
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=26.81 E-value=1.4e+02 Score=28.28 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCC
Q 004372 514 MHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 573 (758)
Q Consensus 514 m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg 573 (758)
-.+.|.++.++++++.||+|+..+ .+|.........+.+.+++-++-+++| +++|.-
T Consensus 41 ~~~~l~~li~~~~~~~vVVGlP~~--m~g~~~~~~~~~~~f~~~L~~r~~lpv-~l~DER 97 (141)
T COG0816 41 DFNALLKLVKEYQVDTVVVGLPLN--MDGTEGPRAELARKFAERLKKRFNLPV-VLWDER 97 (141)
T ss_pred hHHHHHHHHHHhCCCEEEEecCcC--CCCCcchhHHHHHHHHHHHHHhcCCCE-EEEcCc
Confidence 467899999999999999998764 344433333346788889998999998 677763
No 199
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.50 E-value=6.6e+02 Score=25.17 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=30.1
Q ss_pred CcchHHHHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEe
Q 004372 483 NPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIIL 532 (758)
Q Consensus 483 ~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIl 532 (758)
...++.+.+++.+++.+..+.-...-+ ..-.++.++.+.++++|-||+
T Consensus 13 ~~~~~~~~i~~~~~~~g~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii 60 (266)
T cd06278 13 FYSELLEALSRALQARGYQPLLINTDD--DEDLDAALRQLLQYRVDGVIV 60 (266)
T ss_pred hHHHHHHHHHHHHHHCCCeEEEEcCCC--CHHHHHHHHHHHHcCCCEEEE
Confidence 346677777777776666654332211 224456777778899997776
No 200
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=26.46 E-value=2.2e+02 Score=31.22 Aligned_cols=89 Identities=12% Similarity=0.095 Sum_probs=60.2
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCccccc-CCc-ccc---------cccchH
Q 004372 484 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LET---------TRSDFR 552 (758)
Q Consensus 484 ~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~-dg~-~~~---------~~~~~~ 552 (758)
.+++.+.++. +++++..|-.+-... ..+...+++.|++.++..||.-..+.-.. .|. ++. +...+.
T Consensus 12 ~~~~~~lL~~-A~~~~yAVgAfNv~n--~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 88 (357)
T TIGR01520 12 GDDVHKLFQY-AKENNFAIPAINCTS--SSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGA 88 (357)
T ss_pred HHHHHHHHHH-HHHCCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHH
Confidence 4555555544 444555555666655 58899999999999999999876554222 110 110 112266
Q ss_pred HHHHHHhhcCCCceEEEecCCCC
Q 004372 553 WVNQRVLKHAPCSVGILIDRGLG 575 (758)
Q Consensus 553 ~vn~~VL~~ApCsVgIlvdrg~~ 575 (758)
...+..-+++++||++=.|.|..
T Consensus 89 ~~v~~~Ae~a~VPValHLDHg~~ 111 (357)
T TIGR01520 89 HHVHSIAEHYGVPVVLHTDHCAK 111 (357)
T ss_pred HHHHHHHHHCCCCEEEECCCCCC
Confidence 78888999999999999999853
No 201
>COG2035 Predicted membrane protein [Function unknown]
Probab=26.17 E-value=5.2e+02 Score=27.25 Aligned_cols=49 Identities=27% Similarity=0.495 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHcccCCChhHHHHHHHHhhc--ccccCCch
Q 004372 28 FALPLAILQICLVILLTRGLAFILRPLRQPRVIAEITGGILLG--PSALGRSE 78 (758)
Q Consensus 28 ~~l~~ll~~~~lil~~~~~~~~ll~~l~~P~iv~~ilaGiilG--P~~lg~~~ 78 (758)
+-.|+..--..-+..+++++.++++. .|.++-...+|+++| |+.++..+
T Consensus 57 fLi~l~~G~~~~i~~~a~ii~~ll~~--yp~~t~~fF~GlI~~sVp~llk~i~ 107 (276)
T COG2035 57 FLIPLGIGMLLGIFLFAKIIEYLLEN--YPVPTLAFFAGLILGSVPSLLKEIN 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555566677788888888887 666677778999998 55555543
No 202
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=26.14 E-value=1.5e+02 Score=27.55 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=43.1
Q ss_pred CchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 512 SDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 512 ~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
....+.+.++.++++++.||+|...+ .||.........+.+.+++-++-+.+| .++|--+
T Consensus 34 ~~~~~~l~~~i~~~~~~~iVvGlP~~--~dG~~~~~a~~v~~f~~~L~~~~~~~v-~~~DEr~ 93 (130)
T TIGR00250 34 EPDWSRIEELLKEWTPDKIVVGLPLN--MDGTEGPLTERAQKFANRLEGRFGVPV-VLWDERL 93 (130)
T ss_pred cHHHHHHHHHHHHcCCCEEEEeccCC--CCcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 35568899999999999999998765 355543333446777778777768888 4676644
No 203
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=26.09 E-value=1.1e+02 Score=28.78 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=26.5
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFL 623 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~ 623 (758)
+|++.|.||+|.--.|.++.+...+. -++.++.+-
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~d 35 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLD 35 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeC
Confidence 57899999999999999988866542 355666664
No 204
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=25.75 E-value=2.1e+02 Score=29.82 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=29.9
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCC--CeEEEEEEEe
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHP--GISFIVIRFL 623 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~--~v~ltvvr~~ 623 (758)
..+|+|.+.||+|.--.|.++.++.+.. +.++..+++.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd 68 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLD 68 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEec
Confidence 3599999999999988888888877543 4577777764
No 205
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=25.59 E-value=1.2e+02 Score=30.15 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEeccCCcChHHHHHHHHH
Q 004372 588 TITVLFFGGRDDREALACGAR 608 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~r 608 (758)
++++.|.||+|.--|+..+.+
T Consensus 1 kv~v~~SGGkDS~~al~~a~~ 21 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE 21 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH
Confidence 478999999999999999988
No 206
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=25.06 E-value=3.3e+02 Score=28.93 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=50.7
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC-CceEEEecCCC
Q 004372 498 SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGL 574 (758)
Q Consensus 498 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap-CsVgIlvdrg~ 574 (758)
++..|-.+...+ ..+.+.+++.|+|.++..|+.-..++-...|. ...+....+.+.++++ .||++=-|.|.
T Consensus 14 ~~yav~Afn~~n--~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~----~~~~~~~~~~~a~~~~~vpv~lhlDH~~ 85 (282)
T TIGR01859 14 EGYAVGAFNFNN--LEWTQAILEAAEEENSPVIIQVSEGAIKYMGG----YKMAVAMVKTLIERMSIVPVALHLDHGS 85 (282)
T ss_pred CCceEEEEEECC--HHHHHHHHHHHHHhCCCEEEEcCcchhhccCc----HHHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 444555666655 58899999999999999999876544322221 2346778888899998 78877667763
No 207
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=24.80 E-value=3.6e+02 Score=26.14 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=53.3
Q ss_pred eccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEecCh
Q 004372 592 LFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNT 671 (758)
Q Consensus 592 ~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~~~ 671 (758)
+..||- ..-.+.+|+.|+++-..++-++.=-... +.-+++.+++++.. ..+|.|...-+.|.
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r~~~~--------------~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~ 65 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGRSGAP--------------SAEAEAAIRELESA---GARVEYVQCDVTDP 65 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEESSGGG--------------STTHHHHHHHHHHT---T-EEEEEE--TTSH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEeccCCCc--------------cHHHHHHHHHHHhC---CCceeeeccCccCH
Confidence 345554 6688999999999987776655433111 12245678888764 45899999999999
Q ss_pred HHHHHHHHhccC-C---CEEEEccCC
Q 004372 672 AETIAVIREVSR-C---NLLLVGRMP 693 (758)
Q Consensus 672 ~e~~~~i~~~~~-~---DL~iVGr~~ 693 (758)
+++.+++.+... + |-+|-+.+.
T Consensus 66 ~~v~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 66 EAVAAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp HHHHHHHHTSHTTSS-EEEEEE----
T ss_pred HHHHHHHHHHHhccCCcceeeeeeee
Confidence 999999988764 3 556666654
No 208
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=24.66 E-value=4e+02 Score=25.66 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=57.1
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHHh
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEAF 494 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 494 (758)
|+++++++..+...++.++...... .+..+.++|+-. +... .+.+-.+.++++
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~---~~~~v~~v~id~--~~~~----------------------~~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPR---LGLRLVAVHVDH--GLRP----------------------ESDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHH---cCCcEEEEEecC--CCCc----------------------hHHHHHHHHHHH
Confidence 5889999999899999999887643 256688888842 1110 011223333444
Q ss_pred hhccceEEEEeE-EecC--CCc--------hHHHHHHHHHhcCccEEEecCCcc
Q 004372 495 QQLSRVSVRPMT-AISS--MSD--------MHEDICTTAESKRAAIIILPFHKH 537 (758)
Q Consensus 495 ~~~~~v~v~~~~-~vs~--~~~--------m~~dI~~~A~e~~adlIIlp~h~~ 537 (758)
++..+++.+... ...+ ..+ +.+.+.+.|++.+++.|+.|-|..
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~d 107 (185)
T cd01992 54 CAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHAD 107 (185)
T ss_pred HHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcH
Confidence 444444444331 1111 011 224456789999999999998743
No 209
>PRK08185 hypothetical protein; Provisional
Probab=24.58 E-value=2.2e+02 Score=30.35 Aligned_cols=113 Identities=20% Similarity=0.221 Sum_probs=70.1
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
+++++..|-.+...+ ..+.+.|++.|+|.++..||.-..+.-...| ..+....+..-++++.||++=.|.|.
T Consensus 8 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~~~------~~~~~~~~~~a~~~~vPV~lHLDHg~ 79 (283)
T PRK08185 8 AKEHQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDFLG------DNFFAYVRERAKRSPVPFVIHLDHGA 79 (283)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhhcc------HHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333455555665555 5889999999999999999988765432222 22777888999999999999999985
Q ss_pred CCCcccc-cCCcceEEEEeccCCc-ChHHHHHHHHHHh---hCCCeEE
Q 004372 575 GGTTQVS-ASNVSYTITVLFFGGR-DDREALACGARMA---EHPGISF 617 (758)
Q Consensus 575 ~~~~~~~-~~~~~~~I~v~f~GG~-ddreAL~~a~rma---~~~~v~l 617 (758)
+- .... ..+....- +.+.|-. +.+|=++.++++. ..-++.+
T Consensus 80 ~~-e~i~~ai~~Gf~S-VM~D~S~l~~eeNi~~t~~vv~~a~~~gv~v 125 (283)
T PRK08185 80 TI-EDVMRAIRCGFTS-VMIDGSLLPYEENVALTKEVVELAHKVGVSV 125 (283)
T ss_pred CH-HHHHHHHHcCCCE-EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 30 0000 00011111 2244432 5566666665554 5456555
No 210
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=24.31 E-value=1.6e+02 Score=30.84 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=26.1
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 624 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 624 (758)
.+++.|.||+|+-..|.++.+...+ +.|+.+.+
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DT 73 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDT 73 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEeC
Confidence 3789999999999988888888776 66666653
No 211
>KOG3180 consensus Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=24.20 E-value=1.6e+02 Score=29.32 Aligned_cols=33 Identities=18% Similarity=0.480 Sum_probs=24.0
Q ss_pred HHHHHHhc---cCCCEEEEccCC-------CchhccccccCCC
Q 004372 674 TIAVIREV---SRCNLLLVGRMP-------DGELALALSTRSD 706 (758)
Q Consensus 674 ~~~~i~~~---~~~DL~iVGr~~-------~~~~~~gl~~w~e 706 (758)
+..++++. ++.||++.|+.. ..+|+.||-+|-.
T Consensus 102 vAKiLk~~vekek~~lVllGKQAIDDD~nqTgqmlA~lL~WPQ 144 (254)
T KOG3180|consen 102 VAKILKKLVEKEKSDLVLLGKQAIDDDCNQTGQMLAALLGWPQ 144 (254)
T ss_pred HHHHHHHHHHhhcCCEEEEcccccccchhhhHHHHHHHhCCcc
Confidence 33445444 339999999997 2678999999954
No 212
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=24.16 E-value=1.1e+03 Score=29.25 Aligned_cols=55 Identities=22% Similarity=0.221 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 158 SFLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVA 213 (758)
Q Consensus 158 ~~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~ 213 (758)
.++--++..+-.-+.|+-..+..+.- ....+|+-.+..+..+=+.++++..+++.
T Consensus 336 ~eA~~La~~Lr~GaLp~~~~~~~~~~-Vgpslg~~~i~~~~~aliig~ilV~l~m~ 390 (855)
T PRK14726 336 QGANDLAVLLRAGALPATLTVVEERT-VGPGLGADSIAAGLVAGLIAAILVAALMI 390 (855)
T ss_pred HHHHHHHHHHhcCCCCccccccccee-eCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777776654 56778888887777777777666554443
No 213
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=24.11 E-value=3e+02 Score=30.13 Aligned_cols=79 Identities=14% Similarity=0.120 Sum_probs=53.6
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCccccc-CCc-cccc--------ccchHHHHHHHhhcCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LETT--------RSDFRWVNQRVLKHAPC 564 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~-dg~-~~~~--------~~~~~~vn~~VL~~ApC 564 (758)
+++++..|-.+-... ..+.+.|++.|++.++..||.-..+.-.. .+. ++.. ...+....+..-+++++
T Consensus 11 A~~~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~V 88 (345)
T cd00946 11 AKENGFAIPAVNCTS--SSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGV 88 (345)
T ss_pred HHHCCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCC
Confidence 333444555555554 58899999999999999999876543221 111 1100 01367788889999999
Q ss_pred ceEEEecCCCC
Q 004372 565 SVGILIDRGLG 575 (758)
Q Consensus 565 sVgIlvdrg~~ 575 (758)
||++=.|.|..
T Consensus 89 PValHLDHg~~ 99 (345)
T cd00946 89 PVVLHTDHCAK 99 (345)
T ss_pred CEEEECCCCCC
Confidence 99999999754
No 214
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=23.61 E-value=6.4e+02 Score=32.68 Aligned_cols=53 Identities=11% Similarity=0.259 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 159 FLVFMGVALSITAFPVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAV 212 (758)
Q Consensus 159 ~~l~l~~~ls~Ts~~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~ 212 (758)
.+--++..+-..+.|+-..++.+ .-....+|+-....+.+.=++++.++.+.+
T Consensus 874 EA~~LA~~LrsGaLP~~l~ive~-~tVGPtLG~esi~~gilA~lIglaLVlIFM 926 (1403)
T PRK12911 874 EVHRLATDLKSGAMSFVPEVLSE-EVISPELGKSQRTQGIISVCLGLAVLIVLM 926 (1403)
T ss_pred HHHHHHHHHHhCCCCCCceEEEE-EEEChhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 44555566655566654444444 335778888888888777777765544443
No 215
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=22.96 E-value=2.5e+02 Score=29.79 Aligned_cols=73 Identities=15% Similarity=0.164 Sum_probs=53.7
Q ss_pred hccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCCC
Q 004372 496 QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLG 575 (758)
Q Consensus 496 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~~ 575 (758)
++++..|-.+.... .++.+.+++.|++.++..||--..+.-...| -..+....++.-++++.||++=.|.|.+
T Consensus 9 ~~~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~-----~~~~~~~~~~~a~~~~VPV~lHLDH~~~ 81 (276)
T cd00947 9 REGGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKYAG-----LELLVAMVKAAAERASVPVALHLDHGSS 81 (276)
T ss_pred HHCCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 33455555666655 4899999999999999999977654322222 2237778888999999999999999853
No 216
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=22.88 E-value=1e+03 Score=25.92 Aligned_cols=90 Identities=23% Similarity=0.475 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHh---HHHHHHHhccccc--chhhchhhhHHHHHHHHHHHHHHHHHH
Q 004372 246 HAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIF---LPLYFVSSGLKTN--IATIQGLQSWGLLALVILTACLGKIVG 320 (758)
Q Consensus 246 ~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~---lPlfF~~~G~~~d--l~~l~~~~~~~~~~~ii~~~~~~K~~~ 320 (758)
--++|.++.|++..... .++++++..++| +-+|..-+|+..- +.++.. ..|.++..-++.=++.-.++
T Consensus 181 ~LLlGgliIG~~~g~~g------~~~i~pf~~~lF~G~L~lFLLeMGl~A~~rL~~l~~-~g~~li~Fgi~~Pli~a~ig 253 (327)
T PF05982_consen 181 VLLLGGLIIGFLAGPEG------VESIKPFFVDLFKGVLCLFLLEMGLVAARRLRDLRK-VGWFLIAFGILMPLINALIG 253 (327)
T ss_pred HHHHHHHHHhheeCccc------hhhccchhhccHHHHHHHHHHHhhHHHHHhhHHHHh-hhHHHHHHHHHHHHHHHHHH
Confidence 45678889998886422 233334333332 3356666676542 444443 34554444444445555554
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 004372 321 TFVVSLSFKVPLREALALGILMN 343 (758)
Q Consensus 321 ~~~~~~~~~~~~~~~~~lgl~l~ 343 (758)
..+ +++.+++.-+...++.+..
T Consensus 254 ~~l-g~~~gls~Gg~~llavLaA 275 (327)
T PF05982_consen 254 IGL-GWLLGLSPGGAVLLAVLAA 275 (327)
T ss_pred HHH-HHHhCCCCccHHHHHHHHh
Confidence 444 4777888888888887543
No 217
>TIGR03869 F420-0_ABCperm proposed F420-0 ABC transporter, permease protein. his small clade of ABC-type transporter permease protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with an F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this permease protein is a component of a F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.72 E-value=1e+03 Score=25.88 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=35.0
Q ss_pred HHHcccCCChhHHHHHHHHhhcccccCCchhhhccccCCCcHHHHHHHHHHHHHHHHHH
Q 004372 49 FILRPLRQPRVIAEITGGILLGPSALGRSERFLQAVFPPKSQTVLDTLANLGLIFFMFL 107 (758)
Q Consensus 49 ~ll~~l~~P~iv~~ilaGiilGP~~lg~~~~~~~~~fp~~~~~~l~~l~~lgl~~~lF~ 107 (758)
.+...+|+|+++.-+++|..+|-++.=...-+.+-+ -+++.--.+.-+.++.++.+|.
T Consensus 47 ~ii~~~RlPRil~a~lvG~~La~sG~i~Q~l~rNpL-a~P~iLGissGA~l~~~l~~~~ 104 (325)
T TIGR03869 47 AIVWDLRLPRVLTAAAVGAGLAIAGAVMQSLTRNPL-ADPYLLGLSSGASLGAVAVLVL 104 (325)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCcHHHHHHHHHHHHHHHHHH
Confidence 356678999999999999999865421111011111 1223444555667777776665
No 218
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=22.56 E-value=77 Score=28.07 Aligned_cols=23 Identities=9% Similarity=0.192 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHhcCccEEEecC
Q 004372 512 SDMHEDICTTAESKRAAIIILPF 534 (758)
Q Consensus 512 ~~m~~dI~~~A~e~~adlIIlp~ 534 (758)
.+=+++|++.|+++++|++|+|-
T Consensus 48 ~~d~~~l~~~a~~~~idlvvvGP 70 (100)
T PF02844_consen 48 ITDPEELADFAKENKIDLVVVGP 70 (100)
T ss_dssp TT-HHHHHHHHHHTTESEEEESS
T ss_pred CCCHHHHHHHHHHcCCCEEEECC
Confidence 35689999999999999999996
No 219
>PRK01821 hypothetical protein; Provisional
Probab=22.27 E-value=6.5e+02 Score=23.52 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchh---HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHH--Hhcccccchhhch
Q 004372 225 YVCATLAAVLAAGFITDAIGIH---AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFV--SSGLKTNIATIQG 299 (758)
Q Consensus 225 ~~~~~l~~~l~~~~la~~~g~~---~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~--~~G~~~dl~~l~~ 299 (758)
.+..+++..+..-.+++.++++ +++|-++.=+.+- ......+..++-.++. -=-+|+||+ .+|.-.....+.+
T Consensus 14 ~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~-~~~vk~~~v~~~a~~L-L~~m~LfFVPa~VGim~~~~ll~~ 91 (133)
T PRK01821 14 AFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLA-LQILPAKWVKPGCSLL-IRYMALLFVPIGVGVMQYYDLLRA 91 (133)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHH-hCCcCHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 004372 300 LQSWGLLALVILTACLGKIVGTFVVSLSFK 329 (758)
Q Consensus 300 ~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~ 329 (758)
..|..++.+++..+++=....+..-+..+
T Consensus 92 -~~~~il~~ivvST~lvl~vtg~~~~~l~~ 120 (133)
T PRK01821 92 -QFGPIVVSCIVSTLVVLLVVGWSSHYVHG 120 (133)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 220
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=22.12 E-value=1.4e+02 Score=33.06 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=31.6
Q ss_pred cCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEee
Q 004372 582 ASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLL 624 (758)
Q Consensus 582 ~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~ 624 (758)
+-.+..++++.+.||.|.--|+.++.+. +.++..++|..
T Consensus 168 P~g~~~kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~ 206 (371)
T TIGR00342 168 PVGTQGKVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFN 206 (371)
T ss_pred CcCcCCeEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeC
Confidence 3445679999999999999999888552 67888889873
No 221
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.72 E-value=2.9e+02 Score=29.37 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=53.2
Q ss_pred hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 495 QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 495 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
+++++..|-.+.... ..+...|++.|++.++..||.-..+.-..-| -..+....+..-++++.||++=.|.|.
T Consensus 13 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~~g-----~~~~~~~~~~~A~~~~VPV~lHLDHg~ 85 (284)
T PRK09195 13 AQRGGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSYAG-----TEYLLAIVSAAAKQYHHPLALHLDHHE 85 (284)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhhCC-----HHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 333455555555555 5889999999999999999987654322212 123677888899999999999999985
No 222
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.39 E-value=5.8e+02 Score=28.31 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHHHhHHHHHHHhccccc
Q 004372 271 KVEDLVSGIFLPLYFVSSGLKTN 293 (758)
Q Consensus 271 ki~~~~~~~~lPlfF~~~G~~~d 293 (758)
.++..+++.+|.+||..+|+.+.
T Consensus 55 ~l~~WiNDgLMaiFFf~vGLEiK 77 (383)
T PRK14854 55 NLMHWINDGLMAIYFLYIGLEIK 77 (383)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHH
Confidence 46677889999999999999987
No 223
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=21.28 E-value=4.7e+02 Score=25.93 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=26.7
Q ss_pred eEE-EEeccCCcChHHHH-HHHHHHhhCCCeEEEEEEEeec
Q 004372 587 YTI-TVLFFGGRDDREAL-ACGARMAEHPGISFIVIRFLLA 625 (758)
Q Consensus 587 ~~I-~v~f~GG~ddreAL-~~a~rma~~~~v~ltvvr~~~~ 625 (758)
+|| +++-.++.+|.+.+ +.+++++++ ++++.++-|-..
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~ 147 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEI 147 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCC
Confidence 474 44444446666555 788888777 999999999744
No 224
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=21.22 E-value=1.2e+03 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.2
Q ss_pred HHHHHHHHHhHHHHHHHhccccc
Q 004372 271 KVEDLVSGIFLPLYFVSSGLKTN 293 (758)
Q Consensus 271 ki~~~~~~~~lPlfF~~~G~~~d 293 (758)
.++..+++.+|.+||..+|+.+.
T Consensus 61 ~l~~wiNDgLMaiFFf~vGLEiK 83 (423)
T PRK14853 61 SLGTWAADGLLAIFFFVVGLELK 83 (423)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHh
Confidence 46677889999999999999985
No 225
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=21.08 E-value=1.2e+03 Score=26.17 Aligned_cols=146 Identities=15% Similarity=0.133 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchhhhHHHHHHHHH
Q 004372 232 AVLAAGFITDAIGIHAMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGLQSWGLLALVIL 311 (758)
Q Consensus 232 ~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~ 311 (758)
+.+..+.++....=..++|++.+-+++.. ++ +.-....|+|+...| +..-..+.. .+ .-++.+.
T Consensus 198 LGl~~~ai~~ll~~~~~~as~~F~LAlny-----KQ-------MeLY~A~pfF~fLLg-~c~k~k~~~--~f-~ri~~ia 261 (510)
T KOG2575|consen 198 LGLTLYAIAALLKNFYVLASVLFVLALNY-----KQ-------MELYHALPFFAFLLG-SCLKPKLFN--SF-ARIIKIA 261 (510)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhH-----HH-------HHHHhchHHHHHHHH-HHhcccchH--HH-HHHHHHH
Confidence 44555666677777889999999998872 11 112456788888888 444444432 11 2234445
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhhccCC-------ccchhhHHHHHHHHHHHHHHHHHH
Q 004372 312 TACLGKIVGTFVVSLSFKVPLREALALGILMNTKGLVELIVLNIGKDRK-------VLNDQVFAIMILMAVVTTFMTTPL 384 (758)
Q Consensus 312 ~~~~~K~~~~~~~~~~~~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~-------~i~~~~~~~lv~~~lv~t~i~~pl 384 (758)
+.+++-++-++++-...+-...+-+. =+.=-.||.+|=-+++.+-..+ +...+...++.++..+.+ ..|-.
T Consensus 262 ~~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tli~-~LPs~ 339 (510)
T KOG2575|consen 262 LAVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATLIG-SLPSM 339 (510)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH-HhHHH
Confidence 56667777788877776644444322 1112358888888888776443 333344443333322222 23444
Q ss_pred HHHHcchhhhh
Q 004372 385 VMAVYKPARRA 395 (758)
Q Consensus 385 v~~l~~~~~~~ 395 (758)
+....+|+++-
T Consensus 340 v~l~L~P~~~~ 350 (510)
T KOG2575|consen 340 VVLFLRPTNKG 350 (510)
T ss_pred HHHhhcccccc
Confidence 55555666553
No 226
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=21.02 E-value=5.7e+02 Score=28.39 Aligned_cols=109 Identities=18% Similarity=0.136 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CchhHHHHHHHH--HHhhccH
Q 004372 96 LANLGLIFFMFLVGLELDPKSLRQTGKKALGIAIAGISLPFALGIGSSFLLRETISKG-VDSTSFLVFMGV--ALSITAF 172 (758)
Q Consensus 96 l~~lgl~~~lF~~Gle~d~~~l~~~~~~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~-~~~~~~~l~l~~--~ls~Ts~ 172 (758)
++-+|...++-..-.+.+.+.+.+.++-.....+...+.-++.-....+.+.+.-+.. +......+..+. .-|....
T Consensus 183 ~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~T~SS~atl 262 (390)
T PF00375_consen 183 LAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFSTSSSAATL 262 (390)
T ss_dssp THHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHHHT-TTTSH
T ss_pred HHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 4456666666666677888888877654443333333222222222222121100000 001122333333 3355668
Q ss_pred HHHHHHHHh-ccccCChhHHHHH--HHHHHHHHHHH
Q 004372 173 PVLARILAE-LKLLTADVGRMAM--SAAAVNDVAAW 205 (758)
Q Consensus 173 ~vv~~iL~e-lkll~s~~g~lal--s~a~i~D~~~~ 205 (758)
|+..+-++| +| .+.++.+.++ ++.+-.|..++
T Consensus 263 P~~~~~~~~~~g-v~~~i~~fv~Plg~t~n~~G~a~ 297 (390)
T PF00375_consen 263 PVTIECLEENLG-VSRSIASFVLPLGATINMDGTAL 297 (390)
T ss_dssp HHHHHHHHT-TT---HHHHHHHHHHHTTS--HHHHH
T ss_pred hhHHHHHHHhcC-CCcccceeeechhccccCCccch
Confidence 999999998 46 6888888884 55555565544
No 227
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=21.01 E-value=3.4e+02 Score=29.74 Aligned_cols=88 Identities=11% Similarity=0.096 Sum_probs=58.0
Q ss_pred chHHHHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCccccc-CCc-ccc--------cccchHHH
Q 004372 485 NHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRL-DGS-LET--------TRSDFRWV 554 (758)
Q Consensus 485 ~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~-dg~-~~~--------~~~~~~~v 554 (758)
++..+.++. +++++..|-.+.... -.+.+.|++.|+|.++..||.-..+.-.. .|. ++. +...+...
T Consensus 7 ~~~k~~L~~-A~~~~yAV~AfNv~n--~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (350)
T PRK09197 7 EDYQEMFDR-AKENGFALPAVNVVG--TDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKH 83 (350)
T ss_pred HHHHHHHHH-HHHCCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHH
Confidence 444444444 333555555666655 58899999999999999999876543222 221 110 00115567
Q ss_pred HHHHhhcCCCceEEEecCCCC
Q 004372 555 NQRVLKHAPCSVGILIDRGLG 575 (758)
Q Consensus 555 n~~VL~~ApCsVgIlvdrg~~ 575 (758)
.+...+++++||++=.|.|..
T Consensus 84 v~~~A~~~~VPValHLDHg~~ 104 (350)
T PRK09197 84 VHEVAEHYGVPVILHTDHCAK 104 (350)
T ss_pred HHHHHHHCCCCEEEECCCCCC
Confidence 788899999999999999854
No 228
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.92 E-value=1.7e+02 Score=31.51 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCCCceEEEEEEe---cChHHHHHHHHhcc------CCCEEEEccCC
Q 004372 645 EEVLSEFKLKTSRNGSVRYEERLV---RNTAETIAVIREVS------RCNLLLVGRMP 693 (758)
Q Consensus 645 ~~~~~e~~~~~~~~~~v~y~e~~v---~~~~e~~~~i~~~~------~~DL~iVGr~~ 693 (758)
.+++...+.++.. -++.+-...| +...+++++|+.++ +||++|++||+
T Consensus 29 ~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGG 85 (319)
T PF02601_consen 29 QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGG 85 (319)
T ss_pred HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCC
Confidence 4666666666532 3455555555 66788899998775 28999999998
No 229
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=20.70 E-value=3.4e+02 Score=28.89 Aligned_cols=72 Identities=8% Similarity=0.039 Sum_probs=52.1
Q ss_pred hccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 496 QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 496 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
++++..|-.+-..+ ..+.+.|++.|+|.++..||.-..+.-..- +...+....+...++++.||++=.|.|.
T Consensus 14 ~~~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~-----~~~~~~~~~~~~a~~~~VPValHLDHg~ 85 (286)
T PRK12738 14 QANGYAVPAFNIHN--AETIQAILEVCSEMRSPVILAGTPGTFKHI-----ALEEIYALCSAYSTTYNMPLALHLDHHE 85 (286)
T ss_pred HHCCceEEEEEeCC--HHHHHHHHHHHHHHCCCEEEEcCcchhhhC-----CHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 33455555555555 588999999999999999998554332111 2233677888899999999999999985
No 230
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.57 E-value=5e+02 Score=25.13 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=21.0
Q ss_pred CcChHHHHHHHHHHhhCCCeEEEEEEEe
Q 004372 596 GRDDREALACGARMAEHPGISFIVIRFL 623 (758)
Q Consensus 596 G~ddreAL~~a~rma~~~~v~ltvvr~~ 623 (758)
.+.|.|+++.|++|++ .+.+++++-+-
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G 44 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIG 44 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEEC
Confidence 4788999999999987 45567666664
No 231
>PLN03211 ABC transporter G-25; Provisional
Probab=20.56 E-value=1.5e+03 Score=27.15 Aligned_cols=17 Identities=6% Similarity=0.290 Sum_probs=12.2
Q ss_pred HHHhHHHHHHHhccccc
Q 004372 277 SGIFLPLYFVSSGLKTN 293 (758)
Q Consensus 277 ~~~~lPlfF~~~G~~~d 293 (758)
..+++..|+++.|+-++
T Consensus 553 ~~~~~~~~~lfsGf~i~ 569 (659)
T PLN03211 553 VTVTMLAFVLTGGFYVH 569 (659)
T ss_pred HHHHHHHHHHHhhhhHh
Confidence 35666677888898775
No 232
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=20.41 E-value=3.8e+02 Score=24.00 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCCCCCcccccCCcceEEEEeccC
Q 004372 516 EDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGLGGTTQVSASNVSYTITVLFFG 595 (758)
Q Consensus 516 ~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~~~~~~~~~~~~~~~I~v~f~G 595 (758)
-++.++|...+.++||+|-- ++ .++--.|++-+++++.-.+.......+...|++++|.|
T Consensus 9 Pe~~KlA~K~gk~livlpdl----------------~D----AiEvl~p~~V~~i~~~~~~~~~~~~~~~~~rvllVf~G 68 (106)
T PF09895_consen 9 PEAFKLALKLGKSLIVLPDL----------------KD----AIEVLKPDVVYLISRSGEEEEKLEFLKIEGRVLLVFSG 68 (106)
T ss_pred HHHHHHHHHcCCcEEEeCCH----------------HH----HHHhcCCcEEEEEcCcccccccccccCcCCcEEEEEeC
Confidence 36889999999999999962 11 22333456667776633221111223456789999988
Q ss_pred Cc
Q 004372 596 GR 597 (758)
Q Consensus 596 G~ 597 (758)
+.
T Consensus 69 ~d 70 (106)
T PF09895_consen 69 SD 70 (106)
T ss_pred CC
Confidence 64
No 233
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=20.31 E-value=1e+03 Score=31.52 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHhcccccchhhchhhhH
Q 004372 277 SGIFLPLYFVSSGLKTNIATIQGLQSW 303 (758)
Q Consensus 277 ~~~~lPlfF~~~G~~~dl~~l~~~~~~ 303 (758)
..+++.+|+++.|+-++...+..+..|
T Consensus 567 ~~~~~~~~~lf~Gf~i~~~~mp~~~~W 593 (1394)
T TIGR00956 567 AAILLLALSIYTGFAIPRPSMLGWSKW 593 (1394)
T ss_pred HHHHHHHHHHHcccccChhhccHHHHH
Confidence 466777788999999988877643333
No 234
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=20.12 E-value=7.1e+02 Score=23.17 Aligned_cols=111 Identities=13% Similarity=0.102 Sum_probs=64.9
Q ss_pred HHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 489 VAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 489 ~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+.+..+.+..+..|...=. +...+++.+.|++.++|+|.+-+.... ....++.+.+.+-++-+-.+-|
T Consensus 21 ~iv~~~lr~~G~eVi~LG~----~vp~e~i~~~a~~~~~d~V~lS~~~~~--------~~~~~~~~~~~L~~~~~~~~~i 88 (137)
T PRK02261 21 KILDRALTEAGFEVINLGV----MTSQEEFIDAAIETDADAILVSSLYGH--------GEIDCRGLREKCIEAGLGDILL 88 (137)
T ss_pred HHHHHHHHHCCCEEEECCC----CCCHHHHHHHHHHcCCCEEEEcCcccc--------CHHHHHHHHHHHHhcCCCCCeE
Confidence 3455566666666654322 466899999999999999999874321 2234667776665541223333
Q ss_pred EecCCC-CCCcccc---cCCcceEEEEeccCCcChHHHHHHHHHHhh
Q 004372 569 LIDRGL-GGTTQVS---ASNVSYTITVLFFGGRDDREALACGARMAE 611 (758)
Q Consensus 569 lvdrg~-~~~~~~~---~~~~~~~I~v~f~GG~ddreAL~~a~rma~ 611 (758)
.+-=.. .+...+. ..-...-+..+|.+|.+..|.+.+.++-++
T Consensus 89 ~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 89 YVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred EEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 321111 0000000 001112367789999999999999888664
No 235
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=20.12 E-value=3.6e+02 Score=29.59 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=54.1
Q ss_pred hccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC-CceEEEecCCC
Q 004372 496 QLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP-CSVGILIDRGL 574 (758)
Q Consensus 496 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap-CsVgIlvdrg~ 574 (758)
++++..|-.+...+ ..+.+.|++.|++.++.+||.-..+.-..-| ...+..+.+...++++ .||++=.|.|.
T Consensus 12 ~~~~yAV~AfN~~n--~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g-----~~~~~~~~~~~ae~~~~VPValHLDHg~ 84 (347)
T TIGR01521 12 AEFGYGVPAFNVNN--MEQMRAIMEAADKTDSPVILQASRGARSYAG-----APFLRHLILAAIEEYPHIPVVMHQDHGN 84 (347)
T ss_pred HHcCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEECCcchhhhCC-----HHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 33455555666655 5889999999999999999988765432222 2347778888999998 99999999985
No 236
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=20.12 E-value=6.3e+02 Score=29.76 Aligned_cols=112 Identities=23% Similarity=0.287 Sum_probs=71.5
Q ss_pred cchHHHHHHHhhcCCCceEEEecCCCCCCc--c--cc--------cCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeE
Q 004372 549 SDFRWVNQRVLKHAPCSVGILIDRGLGGTT--Q--VS--------ASNVSYTITVLFFGGRDDREALACGARMAEHPGIS 616 (758)
Q Consensus 549 ~~~~~vn~~VL~~ApCsVgIlvdrg~~~~~--~--~~--------~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ 616 (758)
..+|.....-+.+--+|++|=.+||.+... . +. -.....+++++-+| .--.+|+..|.++.++ +++
T Consensus 452 ~el~~ml~ta~~~~~gP~AiRyPrg~~~~~~~~~~~~~~~~Gk~~i~~~G~~vail~~G-~~~~~al~vae~L~~~-Gi~ 529 (627)
T COG1154 452 EELRQMLYTALAQDDGPVAIRYPRGNGVGVILTPELEPLEIGKGELLKEGEKVAILAFG-TMLPEALKVAEKLNAY-GIS 529 (627)
T ss_pred HHHHHHHHHHHhcCCCCeEEEecCCCCCCCCcccccccccccceEEEecCCcEEEEecc-hhhHHHHHHHHHHHhc-CCC
Confidence 457777777777777777888899843111 1 00 01123467776666 6677899999999965 788
Q ss_pred EEEE--EEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEecCh---HHHHHHHHhcc
Q 004372 617 FIVI--RFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNT---AETIAVIREVS 682 (758)
Q Consensus 617 ltvv--r~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~~~---~e~~~~i~~~~ 682 (758)
.||+ ||+ +-+|++++.++..++ +.+.-.|+-+..| +.+.+.+.+.+
T Consensus 530 ~TVvd~rfv-----------------kPlD~~ll~~La~~h---~~~vtlEe~~~~GG~Gs~v~efl~~~~ 580 (627)
T COG1154 530 VTVVDPRFV-----------------KPLDEALLLELAKSH---DLVVTLEENVVDGGFGSAVLEFLAAHG 580 (627)
T ss_pred cEEEcCeec-----------------CCCCHHHHHHHHhhc---CeEEEEecCcccccHHHHHHHHHHhcC
Confidence 8876 454 457899999998875 3444455544333 44555555543
No 237
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.11 E-value=1.6e+02 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCCceEEEEEEe--cChHHHHHHHHhccC---CCEEEEccCC
Q 004372 645 EEVLSEFKLKTSRNGSVRYEERLV--RNTAETIAVIREVSR---CNLLLVGRMP 693 (758)
Q Consensus 645 ~~~~~e~~~~~~~~~~v~y~e~~v--~~~~e~~~~i~~~~~---~DL~iVGr~~ 693 (758)
.+.+...+.+.+.-+-+.|-..+= +.+.|++++|+.++. +|.+|||||+
T Consensus 150 rDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 150 RDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred HHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 456666777765444444543332 345788899987766 9999999998
No 238
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=20.02 E-value=6.2e+02 Score=24.16 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=27.4
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEee
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLM 453 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlv 453 (758)
|+++++.+-.+...++.++...... ..-+..++++|+-
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~-~~~~~~~~~~~~d 38 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRR-YPYGFELEALTVD 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhh-cCCCeEEEEEEEE
Confidence 5889999888888888888776543 1115667888875
Done!