Query 004372
Match_columns 758
No_of_seqs 329 out of 2329
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 23:09:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004372.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004372hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.2E-23 4E-28 226.9 6.9 285 91-389 58-384 (388)
2 3mt0_A Uncharacterized protein 99.8 3.1E-17 1E-21 173.6 21.3 262 414-734 8-278 (290)
3 3loq_A Universal stress protei 99.7 2.2E-17 7.5E-22 175.0 15.7 265 414-733 23-291 (294)
4 3olq_A Universal stress protei 99.7 6.4E-17 2.2E-21 173.2 15.2 283 414-734 8-307 (319)
5 3cis_A Uncharacterized protein 99.7 4.5E-16 1.5E-20 166.1 18.9 276 413-732 19-306 (309)
6 3ab8_A Putative uncharacterize 99.7 7.1E-16 2.4E-20 160.9 17.9 256 415-730 2-267 (268)
7 3s3t_A Nucleotide-binding prot 99.2 2.4E-11 8.4E-16 113.9 9.0 135 414-568 6-144 (146)
8 1mjh_A Protein (ATP-binding do 99.2 2.6E-10 8.9E-15 109.0 13.8 142 414-569 6-157 (162)
9 3fdx_A Putative filament prote 99.2 8.8E-11 3E-15 109.7 9.7 135 414-568 2-141 (143)
10 3hgm_A Universal stress protei 99.1 6.8E-11 2.3E-15 110.9 8.2 141 414-568 3-146 (147)
11 3dlo_A Universal stress protei 99.1 3.5E-10 1.2E-14 107.7 11.2 129 413-568 24-153 (155)
12 1tq8_A Hypothetical protein RV 99.1 1.8E-10 6.2E-15 110.7 9.1 138 412-569 16-156 (163)
13 2dum_A Hypothetical protein PH 99.1 3.4E-10 1.2E-14 109.2 11.0 143 414-569 6-154 (170)
14 3fg9_A Protein of universal st 99.1 5.7E-11 2E-15 112.9 5.3 136 413-568 15-154 (156)
15 2z08_A Universal stress protei 99.1 2.1E-10 7.3E-15 106.4 7.8 132 414-568 3-135 (137)
16 3tnj_A Universal stress protei 99.0 2.1E-10 7.3E-15 108.0 6.5 138 414-569 7-145 (150)
17 2gm3_A Unknown protein; AT3G01 99.0 1.1E-09 3.9E-14 106.1 10.6 143 413-570 5-162 (175)
18 1jmv_A USPA, universal stress 99.0 1.1E-09 3.7E-14 102.0 10.1 131 414-569 3-136 (141)
19 3idf_A USP-like protein; unive 99.0 1.1E-09 3.7E-14 101.6 9.9 133 414-568 2-136 (138)
20 1q77_A Hypothetical protein AQ 98.8 1.8E-08 6.1E-13 93.3 9.6 129 414-568 5-136 (138)
21 3mt0_A Uncharacterized protein 98.7 2.1E-08 7E-13 105.5 7.8 136 412-571 133-276 (290)
22 3olq_A Universal stress protei 98.6 1.3E-07 4.6E-12 100.4 9.5 146 412-574 155-308 (319)
23 3loq_A Universal stress protei 98.5 1.4E-07 4.7E-12 99.3 9.0 120 412-569 169-288 (294)
24 3cis_A Uncharacterized protein 98.4 1.2E-06 4.2E-11 92.7 11.0 132 413-569 171-304 (309)
25 3s3t_A Nucleotide-binding prot 98.4 1.6E-06 5.5E-11 80.6 10.3 135 585-731 4-146 (146)
26 3idf_A USP-like protein; unive 98.3 6.4E-06 2.2E-10 75.8 12.1 129 587-730 2-137 (138)
27 3dlo_A Universal stress protei 98.3 7.8E-07 2.7E-11 84.3 5.9 128 585-731 23-155 (155)
28 3hgm_A Universal stress protei 98.2 2.3E-06 7.9E-11 79.6 8.0 134 586-730 2-147 (147)
29 1tq8_A Hypothetical protein RV 98.2 6.4E-06 2.2E-10 78.6 10.0 136 585-732 16-158 (163)
30 2dum_A Hypothetical protein PH 98.1 4.7E-06 1.6E-10 79.8 8.7 138 586-734 5-158 (170)
31 1mjh_A Protein (ATP-binding do 98.1 9.1E-06 3.1E-10 77.0 10.4 136 586-732 5-159 (162)
32 2z08_A Universal stress protei 98.1 6.1E-06 2.1E-10 75.9 8.7 132 586-731 2-137 (137)
33 3tnj_A Universal stress protei 98.1 7.3E-06 2.5E-10 76.6 8.1 135 586-733 6-148 (150)
34 3ab8_A Putative uncharacterize 98.1 4.2E-06 1.4E-10 86.5 6.9 114 413-569 154-267 (268)
35 3fdx_A Putative filament prote 98.1 1.3E-05 4.4E-10 74.1 9.5 131 587-730 2-142 (143)
36 3fg9_A Protein of universal st 98.0 6.5E-06 2.2E-10 77.6 6.8 133 584-731 13-156 (156)
37 1jmv_A USPA, universal stress 97.9 4.1E-05 1.4E-09 70.5 10.1 131 586-732 2-138 (141)
38 3zux_A Transporter, ASBTNM; tr 97.9 0.0032 1.1E-07 67.1 25.6 262 96-390 44-311 (332)
39 1q77_A Hypothetical protein AQ 97.8 5.7E-05 2E-09 69.3 8.3 105 585-693 3-119 (138)
40 2gm3_A Unknown protein; AT3G01 97.7 0.0002 6.8E-09 68.7 11.4 138 585-733 4-164 (175)
41 3g40_A Na-K-CL cotransporter; 95.9 0.11 3.7E-06 53.1 14.2 218 414-693 21-254 (294)
42 1iv0_A Hypothetical protein; r 68.8 9.8 0.00033 32.3 6.2 56 513-572 38-93 (98)
43 3zux_A Transporter, ASBTNM; tr 65.1 63 0.0022 33.6 13.1 131 247-389 23-155 (332)
44 1efp_B ETF, protein (electron 63.8 14 0.00049 37.0 7.4 89 596-704 36-141 (252)
45 1zun_A Sulfate adenylyltransfe 61.4 13 0.00046 38.7 7.0 56 587-655 47-102 (325)
46 1efv_B Electron transfer flavo 61.4 14 0.00046 37.3 6.7 92 593-704 36-144 (255)
47 1o97_C Electron transferring f 58.2 18 0.00062 36.5 7.0 93 593-704 33-140 (264)
48 1ni5_A Putative cell cycle pro 45.2 28 0.00095 37.9 6.4 58 587-655 14-72 (433)
49 3fwk_A FMN adenylyltransferase 44.1 62 0.0021 33.3 8.4 90 587-693 59-170 (308)
50 2wsi_A FAD synthetase; transfe 43.8 69 0.0024 32.9 8.9 90 587-693 54-167 (306)
51 1nu0_A Hypothetical protein YQ 41.8 32 0.0011 31.0 5.2 59 513-574 40-98 (138)
52 1wy5_A TILS, hypothetical UPF0 41.2 26 0.0009 36.2 5.2 58 587-655 25-83 (317)
53 3a2k_A TRNA(Ile)-lysidine synt 38.4 27 0.00092 38.4 4.9 60 586-655 18-77 (464)
54 3gxq_A Putative regulator of t 37.8 21 0.00071 25.0 2.4 27 498-528 10-36 (54)
55 4b4t_W RPN10, 26S proteasome r 36.9 76 0.0026 32.0 7.6 37 587-625 108-147 (268)
56 1vhx_A Putative holliday junct 30.8 70 0.0024 29.1 5.7 59 511-572 40-98 (150)
57 2oq2_A Phosphoadenosine phosph 28.9 50 0.0017 33.0 4.7 54 588-655 43-96 (261)
58 2k4m_A TR8_protein, UPF0146 pr 28.3 82 0.0028 28.8 5.5 35 504-538 92-126 (153)
59 1sur_A PAPS reductase; assimil 26.9 69 0.0024 30.7 5.2 52 587-655 45-96 (215)
60 2l0e_A Sodium/hydrogen exchang 26.4 18 0.00062 24.1 0.6 26 159-184 5-30 (33)
61 2l82_A Designed protein OR32; 25.7 1.7E+02 0.0057 24.8 6.5 80 588-692 3-86 (162)
62 2k3c_A TMIX peptide; membrane 23.0 1.2 4E-05 29.9 -5.8 28 234-261 4-31 (33)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.88 E-value=1.2e-23 Score=226.89 Aligned_cols=285 Identities=19% Similarity=0.200 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCchhH----Hhccc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHH
Q 004372 91 TVLDTLANLGLIFFMFLVGLELDPKSL----RQTGK--KALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMG 164 (758)
Q Consensus 91 ~~l~~l~~lgl~~~lF~~Gle~d~~~l----~~~~~--~~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~ 164 (758)
.....+.+-.+.+|||.+|+|+|.+.+ ++.+| .+...++.|+++|++++.. +. .+. .......
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~~----~~----~~~---~~~~~gw 126 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYLA----FN----YAD---PITREGW 126 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----GC----CSS---TTHHHHT
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHH----Hh----cCC---hhhhhhh
Confidence 356788999999999999999998877 55444 4788899999999988421 11 111 1233444
Q ss_pred HHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------------CCCCchHH
Q 004372 165 VALSITAFPVLARILAELKL-LTADVGRMAMSAAAVNDVAAWILLALAVALSGS------------------GEPVEETY 225 (758)
Q Consensus 165 ~~ls~Ts~~vv~~iL~elkl-l~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~------------------~~~~~e~~ 225 (758)
.+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++.+-..+ +...+...
T Consensus 127 ~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt~~~~~~~l~~~~~~~~~~~~l~r~~v~~~~ 206 (388)
T 1zcd_A 127 AIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGARRTG 206 (388)
T ss_dssp SSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 45667888888899998754 566777999999999999999999887531100 33334444
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC----ChhHHHHHHHHHHHHHHhHHHH-HHHhcccccchhhchh
Q 004372 226 VCATLAAVLAAGFITDAIGIHAMFGAFVVGVLVPKEG----PFANALVEKVEDLVSGIFLPLY-FVSSGLKTNIATIQGL 300 (758)
Q Consensus 226 ~~~~l~~~l~~~~la~~~g~~~~lgaf~aGL~l~~~~----~~~~~l~~ki~~~~~~~~lPlf-F~~~G~~~dl~~l~~~ 300 (758)
.+.++ . +.+.+.++..|+|+++|+|++|+++|+.+ +..+++++++++++..+++|+| |+..|.++|.......
T Consensus 207 ~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l 284 (388)
T 1zcd_A 207 VYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGL 284 (388)
T ss_dssp HHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTH
T ss_pred HHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhc
Confidence 44433 2 34556779999999999999999999743 5688999999999999999999 9999999997432211
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHHHHHHHHHHHHHHhhccCCc--cchhhHH
Q 004372 301 QSWGLLALVILTACLGKIVGTFVVSLSF----------KVPLREALALGILMNTKGLVELIVLNIGKDRKV--LNDQVFA 368 (758)
Q Consensus 301 ~~~~~~~~ii~~~~~~K~~~~~~~~~~~----------~~~~~~~~~lgl~l~~kG~~~l~~~~~~~~~~~--i~~~~~~ 368 (758)
.. .....+++..+++|++|++..++.. +++++|...+|++++.++++++++++.+++.+. +.++.+.
T Consensus 285 ~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~ 363 (388)
T 1zcd_A 285 TS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKL 363 (388)
T ss_dssp HH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHH
T ss_pred cC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHHHhccCCchhhHhhHHH
Confidence 11 1122455566999999966666555 899999999999999999999999999998876 3566688
Q ss_pred HHHHHHHHHHHHHHHHHHHHc
Q 004372 369 IMILMAVVTTFMTTPLVMAVY 389 (758)
Q Consensus 369 ~lv~~~lv~t~i~~plv~~l~ 389 (758)
.+++++++++.+.+.++++.+
T Consensus 364 ~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 364 GILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHHHHHTTTSTTTGGGTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 887888776666655554433
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.76 E-value=3.1e-17 Score=173.58 Aligned_cols=262 Identities=12% Similarity=0.088 Sum_probs=179.1
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.+||+|++++++...+++.+..++.. .+.+++++|+++ + + . .++.++.+.+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~---~~a~l~ll~v~~-~----------~--------------~-~~~~l~~~~~ 58 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGV---TQSHLHLLVCEK-R----------R--------------D-HSAALNDLAQ 58 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHH---HCCEEEEEEECS-S----------S--------------C-CHHHHHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHh---cCCeEEEEEeeC-c----------H--------------H-HHHHHHHHHH
Confidence 48999999999999999999999864 567899999986 1 0 0 1233333333
Q ss_pred hhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCC
Q 004372 494 FQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRG 573 (758)
Q Consensus 494 ~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg 573 (758)
..+..+++++.....+ .+..+.|++.|++.++|+||||+|++...++.+ +|++.+++++++||||.+ +..+
T Consensus 59 ~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~------~gs~~~~vl~~~~~PVlv-v~~~ 129 (290)
T 3mt0_A 59 ELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI------LTPDDWKLLRFAPCPVLM-TKTA 129 (290)
T ss_dssp HHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS------CCHHHHHHHHHCSSCEEE-ECCC
T ss_pred HHhhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc------cCHHHHHHHhcCCCCEEE-ecCC
Confidence 3344678888877654 589999999999999999999999876554433 789999999999999855 4432
Q ss_pred CCCCcccccCCcceEEEEeccCCcC-------hHHHHHHHHHHhhCCCeEEEEEEEeecccccCccccc-CCcCccccHH
Q 004372 574 LGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHPGISFIVIRFLLAADAIGNTVSV-DMAGNASMDE 645 (758)
Q Consensus 574 ~~~~~~~~~~~~~~~I~v~f~GG~d-------dreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~-~~~~~~~~d~ 645 (758)
.. . ..++|++++.|.++ .+.|+++|.++|+..+.+++++++.+........+.. ..+..++..+
T Consensus 130 ~~-------~-~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T 3mt0_A 130 RP-------W-TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYR 201 (290)
T ss_dssp SC-------S-TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHH
T ss_pred CC-------C-CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHH
Confidence 21 1 46799999999998 7999999999999999999999998643211000000 0001112223
Q ss_pred HHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-
Q 004372 646 EVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST- 724 (758)
Q Consensus 646 ~~~~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~- 724 (758)
+.++++..++.. +.+. .....++..+.+....+..++||+++|+++ -+|+.+| =+|.+.+-+... +
T Consensus 202 ~~l~~~~~~~g~-~~~~-~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g----~~~~~~~----~~Gsv~~~vl~~---~~ 268 (290)
T 3mt0_A 202 EACRTFQAEYGF-SDEQ-LHIEEGPADVLIPRTAQKLDAVVTVIGTVA----RTGLSGA----LIGNTAEVVLDT---LE 268 (290)
T ss_dssp HHHHHHHHHHTC-CTTT-EEEEESCHHHHHHHHHHHHTCSEEEEECCS----SCCGGGC----CSCHHHHHHHTT---CS
T ss_pred HHHHHHHHHcCC-Ccce-EEEeccCHHHHHHHHHHhcCCCEEEECCCC----CcCCcce----ecchHHHHHHhc---CC
Confidence 555666665422 1111 122334555544333333349999999998 4566665 378888888763 4
Q ss_pred eeEEEEeeec
Q 004372 725 ASVLIIQQYS 734 (758)
Q Consensus 725 ~SvLvvqq~~ 734 (758)
++||||..+.
T Consensus 269 ~pVLvv~~~~ 278 (290)
T 3mt0_A 269 SDVLVLKPDD 278 (290)
T ss_dssp SEEEEECCHH
T ss_pred CCEEEECCCC
Confidence 7999997543
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.73 E-value=2.2e-17 Score=175.00 Aligned_cols=265 Identities=12% Similarity=0.078 Sum_probs=173.4
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.+||+|++++++...+++.+..++.. ...+++++|+++.+...... .. .......+. ..++.++.++.+.+
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~----~~-~~~~~~~~~-~~~~~~~~l~~~~~ 93 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKV---GVEEIGVLFVINLTKLSTVS----GG-IDIDHYIDE-MSEKAEEVLPEVAQ 93 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHT---TCCEEEEECCEECTTC---------C-CCTTHHHHH-HHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhh---cCCEEEEEEEecCccccccc----cc-ccHHHHHHH-HHHHHHHHHHHHHH
Confidence 58999999999999999999999854 67889999999865422100 00 000000000 00223445555555
Q ss_pred hhhccceEEEE-eEE-ecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEec
Q 004372 494 FQQLSRVSVRP-MTA-ISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILID 571 (758)
Q Consensus 494 ~~~~~~v~v~~-~~~-vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvd 571 (758)
..+..+++++. .+. .+ +..+.| .|+++++|+||||.|++....+ ..+|++.++|++++||||.| |.
T Consensus 94 ~~~~~g~~~~~~~v~~~g---~~~~~I--~a~~~~~DliV~G~~g~~~~~~------~~~Gs~~~~vl~~~~~PVlv-v~ 161 (294)
T 3loq_A 94 KIEAAGIKAEVIKPFPAG---DPVVEI--IKASENYSFIAMGSRGASKFKK------ILLGSVSEGVLHDSKVPVYI-FK 161 (294)
T ss_dssp HHHHTTCEEEECSSCCEE---CHHHHH--HHHHTTSSEEEEECCCCCHHHH------HHHCCHHHHHHHHCSSCEEE-EC
T ss_pred HHHHcCCCcceeEeeccC---ChhHhe--eeccCCCCEEEEcCCCCccccc------eeeccHHHHHHhcCCCCEEE-ec
Confidence 55556788887 555 44 889999 9999999999999997654322 23688999999999999855 44
Q ss_pred CCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHH
Q 004372 572 RGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEF 651 (758)
Q Consensus 572 rg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~ 651 (758)
++.. .....++|++++.|.+++++|+++|.++++..+.+++++++.+... .++.++++
T Consensus 162 ~~~~------~~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~----------------~~~~l~~~ 219 (294)
T 3loq_A 162 HDMV------VNSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD----------------KTADLRVM 219 (294)
T ss_dssp CCTT------TTCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC----------------CHHHHHHH
T ss_pred Cccc------cCccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch----------------HHHHHHHH
Confidence 4321 1134579999999999999999999999999999999999985322 12233333
Q ss_pred HhhcCC-CCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEE
Q 004372 652 KLKTSR-NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLI 729 (758)
Q Consensus 652 ~~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLv 729 (758)
+..... +-.+.+ +...++..+.+....+..++||+++|+++ -+++.+| -+|.+.+-+... . ++|||
T Consensus 220 ~~~l~~~~~~~~~-~~~~g~~~~~I~~~a~~~~~dLlV~G~~~----~~~~~~~----~~Gs~~~~vl~~---~~~pvLv 287 (294)
T 3loq_A 220 EEVIGAEGIEVHV-HIESGTPHKAILAKREEINATTIFMGSRG----AGSVMTM----ILGSTSESVIRR---SPVPVFV 287 (294)
T ss_dssp HHHHHHTTCCEEE-EEECSCHHHHHHHHHHHTTCSEEEEECCC----CSCHHHH----HHHCHHHHHHHH---CSSCEEE
T ss_pred HHHHHHcCCcEEE-EEecCCHHHHHHHHHHhcCcCEEEEeCCC----CCCccce----eeCcHHHHHHhc---CCCCEEE
Confidence 322211 112332 22233444332222222239999999998 3445444 367777777652 3 69999
Q ss_pred Eeee
Q 004372 730 IQQY 733 (758)
Q Consensus 730 vqq~ 733 (758)
|.+.
T Consensus 288 v~~~ 291 (294)
T 3loq_A 288 CKRG 291 (294)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 9765
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.71 E-value=6.4e-17 Score=173.24 Aligned_cols=283 Identities=11% Similarity=0.052 Sum_probs=178.0
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCC-chhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSER-SSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 492 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r-~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~ 492 (758)
.+||+|++++++...+++.+..++.. ...+++++|+++.... ....+-....+...... .++.++.++.+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~ 79 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQR---NGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGV-----INQKTAWIKQQA 79 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHH---HCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHH---cCCeEEEEEEecccchhhccccChhhHHHHHHHH-----HHHHHHHHHHHH
Confidence 48999999999999999999999864 5678999999853211 00000000000000000 011233333333
Q ss_pred HhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecC
Q 004372 493 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 572 (758)
Q Consensus 493 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdr 572 (758)
+..+..+++++..+... .+..++|++.|++.++||||||+|++...++.+ +|++.++|++++||||.| |.+
T Consensus 80 ~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~PVlv-v~~ 150 (319)
T 3olq_A 80 RYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI------FTPLDWQLLRKCPAPVWM-VKD 150 (319)
T ss_dssp HHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB------CCHHHHHHHHHCSSCEEE-EES
T ss_pred HHHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc------ccccHHHHHhcCCCCEEE-ecC
Confidence 33334678888877733 499999999999999999999999876554433 789999999999999865 433
Q ss_pred CCCCCcccccCCcceEEEEeccCCcC-------hHHHHHHHHHHhhCC--CeEEEEEEEeecccccCcccccCC---cC-
Q 004372 573 GLGGTTQVSASNVSYTITVLFFGGRD-------DREALACGARMAEHP--GISFIVIRFLLAADAIGNTVSVDM---AG- 639 (758)
Q Consensus 573 g~~~~~~~~~~~~~~~I~v~f~GG~d-------dreAL~~a~rma~~~--~v~ltvvr~~~~~~~~~~~~~~~~---~~- 639 (758)
+. ....+||++++.|.++ ++.|+++|.++|+.. +.+++++++.+............. +.
T Consensus 151 ~~--------~~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~ 222 (319)
T 3olq_A 151 KE--------WPEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYN 222 (319)
T ss_dssp SC--------CCTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHH
T ss_pred cc--------cccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHH
Confidence 22 1245799999999995 489999999999886 999999999864332100000000 00
Q ss_pred --ccccHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhh
Q 004372 640 --NASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLL 717 (758)
Q Consensus 640 --~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~l 717 (758)
.++.-++.++++..++... .+.+ ....++..+.+....+..++||+++|+++ -+|+.+| =+|.+.+-+
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~~-~~~~-~v~~g~~~~~I~~~a~~~~~dLiV~G~~g----~~~~~~~----~~Gsv~~~v 292 (319)
T 3olq_A 223 NALRGQHLIAMKELRQKFSIP-EEKT-HVKEGLPEQVIPQVCEELNAGIVVLGILG----RTGLSAA----FLGNTAEQL 292 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC-GGGE-EEEESCHHHHHHHHHHHTTEEEEEEECCS----CCSTHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCC-cccE-EEecCCcHHHHHHHHHHhCCCEEEEeccC----ccCCccc----cccHHHHHH
Confidence 0111235566666655322 2222 22234554433333222349999999987 3444444 378888777
Q ss_pred hcCCCCc-eeEEEEeeec
Q 004372 718 TSLEFST-ASVLIIQQYS 734 (758)
Q Consensus 718 as~d~~~-~SvLvvqq~~ 734 (758)
... . ++||||..+.
T Consensus 293 l~~---~~~pVLvv~~~~ 307 (319)
T 3olq_A 293 IDH---IKCDLLAIKPDG 307 (319)
T ss_dssp HTT---CCSEEEEECCTT
T ss_pred Hhh---CCCCEEEECCCC
Confidence 753 4 7999998654
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.69 E-value=4.5e-16 Score=166.11 Aligned_cols=276 Identities=15% Similarity=0.146 Sum_probs=171.6
Q ss_pred ceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCch-hH-HHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 004372 413 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSS-AI-LMVHKARRNGLPFWNRGRQSNPNHIVVA 490 (758)
Q Consensus 413 elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~-~~-~i~~~~~~~~~~~~~~~~~~~~~~i~~a 490 (758)
..+||+|++++++...+++.+..++.. ...+++++|+++. .... +. ....+.... . .++.++.++.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~-~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 86 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAEL---RKIPLTLVHAVSP-EVATWLEVPLPPGVLRW-Q-------QDHGRHLIDD 86 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHH---HTCCEEEEEECCC-CCCCTTCCCCCHHHHHH-H-------HHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHh---cCCcEEEEEEecC-cccccccCCCCchhhHH-H-------HHHHHHHHHH
Confidence 458999999999999999999888854 4567899999872 2111 00 000000000 0 0112334443
Q ss_pred HHHhhhc-----cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCc
Q 004372 491 FEAFQQL-----SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCS 565 (758)
Q Consensus 491 f~~~~~~-----~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCs 565 (758)
+.+..+. .+++++..+..+ +..++|++.|+ ++|+||||.|++....+.+ +|++.++|++++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~------~Gs~~~~vl~~~~~P 155 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPA---AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL------LGSVSSGLLRHAHCP 155 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESS---CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC------SCHHHHHHHHHCSSC
T ss_pred HHHHHHHhcccCCCceEEEEEecC---CHHHHHHHHhc--CCCEEEECCCCCccccccc------cCcHHHHHHHhCCCC
Confidence 3333222 267888776654 89999999997 8999999999876554433 789999999999999
Q ss_pred eEEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCc--ccc
Q 004372 566 VGILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGN--ASM 643 (758)
Q Consensus 566 VgIlvdrg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~--~~~ 643 (758)
|.| |.+.... ......++|++++.|.++++.|+++|.++|+..+.+++++++.+..... .. ...+.+ ++.
T Consensus 156 Vlv-v~~~~~~----~~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~-~~--~~~~~~~~~~~ 227 (309)
T 3cis_A 156 VVI-IHDEDSV----MPHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVS-EW--PGIDWPATQSM 227 (309)
T ss_dssp EEE-ECTTCCC----SCSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCT-TC--SSCCHHHHHHH
T ss_pred EEE-EcCCccc----CCCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeeccccc-CC--CcccHHHHHHH
Confidence 865 4432210 0122356999999999999999999999999999999999998543211 00 000001 111
Q ss_pred HHHHHHHHHhhcC---CCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcC
Q 004372 644 DEEVLSEFKLKTS---RNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSL 720 (758)
Q Consensus 644 d~~~~~e~~~~~~---~~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~ 720 (758)
.++.++++..+.. .+-++.+. ...++..+ .+++...++||+++|+++ -+++.+| =+|-+.+-+...
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~--~I~~~a~~adliV~G~~~----~~~~~~~----l~Gsv~~~vl~~ 296 (309)
T 3cis_A 228 AEQVLAERLAGWQERYPNVAITRV-VVRDQPAR--QLVQRSEEAQLVVVGSRG----RGGYAGM----LVGSVGETVAQL 296 (309)
T ss_dssp HHHHHHHHHTTHHHHCTTSCEEEE-EESSCHHH--HHHHHHTTCSEEEEESSC----SSCCTTC----SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEE-EEcCCHHH--HHHHhhCCCCEEEECCCC----CCCcccc----ccCcHHHHHHhc
Confidence 2233444333221 12233332 22333333 333333359999999997 3344444 378888777653
Q ss_pred CCCceeEEEEee
Q 004372 721 EFSTASVLIIQQ 732 (758)
Q Consensus 721 d~~~~SvLvvqq 732 (758)
- . ++||||..
T Consensus 297 ~-~-~pVlvv~~ 306 (309)
T 3cis_A 297 A-R-TPVIVARE 306 (309)
T ss_dssp C-S-SCEEEECC
T ss_pred C-C-CCEEEeCC
Confidence 1 1 69999964
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.67 E-value=7.1e-16 Score=160.90 Aligned_cols=256 Identities=15% Similarity=0.056 Sum_probs=162.8
Q ss_pred EEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCC-------cCCCCCCCcchH
Q 004372 415 RILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPF-------WNRGRQSNPNHI 487 (758)
Q Consensus 415 riLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~i 487 (758)
+||+|++++++...+++.+..++.. .+.+++++|+++......... .......... .+ ...++.++.
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~---~~a~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 75 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYK---LSAPLTVLFVVDTRLARIPEL--LDFGALTVPVPVLRTELER-ALALRGEAV 75 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHH---HTCCEEEEEEEEHHHHTHHHH--C-------CHHHHHHHHHH-HHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHH---hCCcEEEEEEeccCCcccccc--cCchHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 6999999999999999999998854 467889999987432110000 0000000000 00 000122344
Q ss_pred HHHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCccc-ccCCcccccccchHHHHHHHhhcCCCce
Q 004372 488 VVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ-RLDGSLETTRSDFRWVNQRVLKHAPCSV 566 (758)
Q Consensus 488 ~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~-~~dg~~~~~~~~~~~vn~~VL~~ApCsV 566 (758)
++.+.+..+..+++++..+..+ +..+.|++. +.++|+||||.|++. ..++.+ +|++.++|++++||||
T Consensus 76 l~~~~~~~~~~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~------~Gs~~~~v~~~a~~PV 144 (268)
T 3ab8_A 76 LERVRQSALAAGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG------LGSTADRVLRASPVPV 144 (268)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS------CCHHHHHHHHHCSSCE
T ss_pred HHHHHHHHHhCCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc------cchhHHHHHHhCCCCE
Confidence 4444444444677888877765 899999999 999999999999876 554433 7899999999999998
Q ss_pred EEEecCCCCCCcccccCCcceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHH
Q 004372 567 GILIDRGLGGTTQVSASNVSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEE 646 (758)
Q Consensus 567 gIlvdrg~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~ 646 (758)
.| |.++.. ..++|++++.|.++++.|+++|.++++..+.+++++++.+..+. .++
T Consensus 145 lv-v~~~~~---------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~~---------------~~~ 199 (268)
T 3ab8_A 145 LL-APGEPV---------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPAR---------------AEA 199 (268)
T ss_dssp EE-ECSSCC---------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHHH---------------HHH
T ss_pred EE-ECCCCC---------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHHH---------------HHH
Confidence 55 444221 34699999999999999999999999999999999999754211 122
Q ss_pred HHHHHHhhcCC-CCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-
Q 004372 647 VLSEFKLKTSR-NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST- 724 (758)
Q Consensus 647 ~~~e~~~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~- 724 (758)
.+++++..... +-++.+. +..|.-...+++...++||+++|+ + +.+| =+|.+.+-+... +
T Consensus 200 ~l~~~~~~l~~~~~~~~~~---~~~g~~~~~i~~~a~~~dliV~G~-~-------~~~~----~~Gs~~~~vl~~---~~ 261 (268)
T 3ab8_A 200 WALEAEAYLRDHGVEASAL---VLGGDAADHLLRLQGPGDLLALGA-P-------VRRL----VFGSTAERVIRN---AQ 261 (268)
T ss_dssp HHHHHHHHHHHTTCCEEEE---EECSCHHHHHHHHCCTTEEEEEEC-C-------CSCC----SSCCHHHHHHHH---CS
T ss_pred HHHHHHHHHHHcCCceEEE---EeCCChHHHHHHHHHhCCEEEECC-c-------cccc----EeccHHHHHHhc---CC
Confidence 23333222211 1123322 223322223344433389999998 3 3333 356666665542 2
Q ss_pred eeEEEE
Q 004372 725 ASVLII 730 (758)
Q Consensus 725 ~SvLvv 730 (758)
.+||||
T Consensus 262 ~pvlvv 267 (268)
T 3ab8_A 262 GPVLTA 267 (268)
T ss_dssp SCEEEE
T ss_pred CCEEEe
Confidence 577776
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.21 E-value=2.4e-11 Score=113.93 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=99.2
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHH--HHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAIL--MVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~--i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
.+||+|++++++...+++.+..++.. ...+++++|+++.+....... ...+..+. . .++.++.++.+
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~~ 74 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQR---HQANLTALYVVDDSAYHTPALDPVLSELLDA-E-------AAHAKDAMRQR 74 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHH---HTCEEEEEEEEECCCCCCGGGHHHHHHHHHH-H-------HHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCccccccccccccHHHHHH-H-------HHHHHHHHHHH
Confidence 58999999999999999999998854 567899999998654332111 00100000 0 02234555555
Q ss_pred HHhhhccce-EEEEeEEecCCCchHHHHHH-HHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAFQQLSRV-SVRPMTAISSMSDMHEDICT-TAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~-~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
.+..+..++ .++..+..+ +..+.|++ .|++.++|+||||.|++....+.+ +|++.++|++++||||-|
T Consensus 75 ~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 144 (146)
T 3s3t_A 75 QQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA------VGSTTSYVVDHAPCNVIV 144 (146)
T ss_dssp HHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHhcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE------EcchHHHHhccCCCCEEE
Confidence 555555677 788877776 89999999 999999999999999876655444 889999999999999865
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.16 E-value=2.6e-10 Score=109.01 Aligned_cols=142 Identities=18% Similarity=0.190 Sum_probs=95.3
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccC----CchhHH-----H-HhhhhcCCCCCcCCCCCCC
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSE----RSSAIL-----M-VHKARRNGLPFWNRGRQSN 483 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~----r~~~~~-----i-~~~~~~~~~~~~~~~~~~~ 483 (758)
.|||+|++++++...+++.+..++.. ...+++++|+++... .....- . +...... ....++. .++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~ 80 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTL---KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFE-NELKNKL-TEE 80 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCS---SCCEEEEEEEEEGGGTC-----------------CHHHH-HHHHHHH-HHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh---cCCeEEEEEEecCccccccccccccccccccccchhhhH-HHHHHHH-HHH
Confidence 48999999999999999999999854 578899999997430 100000 0 0000000 0000000 011
Q ss_pred cchHHHHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC
Q 004372 484 PNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 563 (758)
Q Consensus 484 ~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap 563 (758)
.++.++.+.+..+..+++++..+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++|
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~------~GSv~~~vl~~~~ 151 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL------LGSVTENVIKKSN 151 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS------SCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE------ecchHHHHHHhCC
Confidence 23344444433334678888777666 89999999999999999999999886555444 8899999999999
Q ss_pred CceEEE
Q 004372 564 CSVGIL 569 (758)
Q Consensus 564 CsVgIl 569 (758)
|||.|+
T Consensus 152 ~pVlvv 157 (162)
T 1mjh_A 152 KPVLVV 157 (162)
T ss_dssp SCEEEE
T ss_pred CCEEEE
Confidence 998653
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.15 E-value=8.8e-11 Score=109.67 Aligned_cols=135 Identities=19% Similarity=0.157 Sum_probs=93.4
Q ss_pred eEEEEEeecCCC--hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 414 FRILACFHSARN--IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~~--~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
.|||+|++++++ ...+++.+..++.. ...+++++|+++.............. . .... .+..++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~--~-~~~~----~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARI---DDAEVHFLTVIPSLPYYASLGMAYTA--E-LPGM----DELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHH---HTCEEEEEEEECC-------------------CH----HHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHh---cCCeEEEEEEecCCcccccccccccc--h-hhhH----HHHHHHHHHHH
Confidence 489999999999 99999999888854 56789999999764322111000000 0 0000 02234566666
Q ss_pred HHhhhcc---ceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAFQQLS---RVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~~~~~---~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+++.++. ++.++..+..+ ++.+.|++.|++.++|+||||.|+ .+..+.+ +|++.++|++++||||-|
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~------~Gs~~~~v~~~~~~pVlv 141 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTYL------LGSNAAAVVRHAECSVLV 141 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS------SCHHHHHHHHHCSSEEEE
T ss_pred HHHHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee------eccHHHHHHHhCCCCEEE
Confidence 6666653 35677777766 999999999999999999999995 4443333 899999999999999865
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.14 E-value=6.8e-11 Score=110.92 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=95.6
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.|||+|++++++...+++.+..++.. .+.+++++|+++.+................ ...+ ...++.++.++.+.+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~ 77 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQL---TGAELYILCVFKHHSLLEASLSMARPEQLD-IPDD-ALKDYATEIAVQAKT 77 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHH---HCCEEEEEEEECCHHHHHHTBSSCCCGGGC-CCTT-HHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCcccccccccccChhhhh-hHHH-HHHHHHHHHHHHHHH
Confidence 37999999999999999999998854 567899999997532111000000000000 0000 000223445555555
Q ss_pred hhhccceEE---EEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 494 FQQLSRVSV---RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 494 ~~~~~~v~v---~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
..+..++++ +..+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||-|
T Consensus 78 ~~~~~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 78 RATELGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL------LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHHTTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC------CCHHHHHHHHHCSSCEEE
T ss_pred HHHhcCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee------eccHHHHHHhhCCCCEEE
Confidence 544456666 7766666 89999999999999999999999876554433 789999999999999854
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.09 E-value=3.5e-10 Score=107.71 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=94.6
Q ss_pred ceEEEEEeec-CCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 413 QFRILACFHS-ARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 413 elriLv~v~~-~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
-.+||+|+++ ++....+++.+..++.. ...+++++|+++........ . .++.++.++.+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~---~~a~l~llhV~~~~~~~~~~-----~------------~~~~~~~l~~~ 83 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARL---RGVPVYVVHSLPGGGRTKDE-----D------------IIEAKETLSWA 83 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHH---HTCCEEEEEEECCSTTSCHH-----H------------HHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEEcCCCcccHH-----H------------HHHHHHHHHHH
Confidence 4589999999 99999999999988854 46678999999754321110 0 01234555555
Q ss_pred HHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
.+..++.++.++..+.+ ...++.+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||.|
T Consensus 84 ~~~~~~~g~~~~~~~~v-~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~------lGSv~~~vl~~a~~PVLv 153 (155)
T 3dlo_A 84 VSIIRKEGAEGEEHLLV-RGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI------FGSVARDVILKANKPVIC 153 (155)
T ss_dssp HHHHHHTTCCEEEEEEE-SSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE------CCHHHHHHHHHCSSCEEE
T ss_pred HHHHHhcCCCceEEEEe-cCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE------eccHHHHHHHhCCCCEEE
Confidence 55555456666654444 12489999999999999999999999876554433 889999999999999855
No 12
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.09 E-value=1.8e-10 Score=110.71 Aligned_cols=138 Identities=9% Similarity=0.063 Sum_probs=94.0
Q ss_pred CceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEE--EeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHH
Q 004372 412 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYAL--HLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVV 489 (758)
Q Consensus 412 ~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~l--hlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 489 (758)
...|||+|+++++....+++.+..++ + ...+++++ |+++......+.-.. .. ...+ ...++.++.++
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA---~-~~a~l~ll~a~v~~~~~~~~~~~~~-~~-----~~~~-~~~~~~~~~l~ 84 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIA---G-ADAKLIIASAYLPQHEDARAADILK-DE-----SYKV-TGTAPIYEILH 84 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHH---T-TTSEEEEEEECCC---------------------------CCTHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHh---C-CCCEEEEEEeeeccCcccccccccc-cH-----HHHH-HHHHHHHHHHH
Confidence 34689999999999999999998887 4 56789999 888643220110000 00 0000 00134556666
Q ss_pred HHHHhhhccceE-EEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 490 AFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 490 af~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
.+.+..+..+++ ++..+..+ +..+.|+++|++.++|+||||.|++....+. .+|++.++|++++||||.|
T Consensus 85 ~~~~~~~~~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~------~lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 85 DAKERAHNAGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGR------LLGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHHTTTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHH------HTBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCcccce------eeccHHHHHHHhCCCCEEE
Confidence 665555556777 88777665 8999999999999999999999987543322 3788999999999999865
Q ss_pred E
Q 004372 569 L 569 (758)
Q Consensus 569 l 569 (758)
+
T Consensus 156 V 156 (163)
T 1tq8_A 156 V 156 (163)
T ss_dssp E
T ss_pred E
Confidence 3
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.09 E-value=3.4e-10 Score=109.16 Aligned_cols=143 Identities=14% Similarity=0.089 Sum_probs=92.1
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhH-HHH--hh-hhcCCCCCcCCCCCCCcchHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAI-LMV--HK-ARRNGLPFWNRGRQSNPNHIVV 489 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~-~i~--~~-~~~~~~~~~~~~~~~~~~~i~~ 489 (758)
.|||+|++++++...+++.+..++.. ...+++++|+++........ -.. .. .........++ ..++.++.++
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ 81 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKM---EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEK-LKEEASRKLQ 81 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCS---CCSEEEEEEEEETTGGGCCC------------CCTTSHHH-HHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHh---cCCEEEEEEEecCccccccccccccccccccccHHHHHHH-HHHHHHHHHH
Confidence 48999999999999999999999854 67889999998743211000 000 00 00000000000 0011233333
Q ss_pred HHHHhhhccceEEEE--eEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceE
Q 004372 490 AFEAFQQLSRVSVRP--MTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 567 (758)
Q Consensus 490 af~~~~~~~~v~v~~--~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVg 567 (758)
.+.+..+..++.++. .+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~------~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 82 EKAEEVKRAFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF------LGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHHHHTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC------CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHHHcCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce------echHHHHHHHhCCCCEE
Confidence 333333334566665 55555 89999999999999999999999876554433 88999999999999986
Q ss_pred EE
Q 004372 568 IL 569 (758)
Q Consensus 568 Il 569 (758)
|+
T Consensus 153 vv 154 (170)
T 2dum_A 153 II 154 (170)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 14
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.09 E-value=5.7e-11 Score=112.93 Aligned_cols=136 Identities=12% Similarity=0.113 Sum_probs=95.0
Q ss_pred ceEEEEEee--cCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHH
Q 004372 413 QFRILACFH--SARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVA 490 (758)
Q Consensus 413 elriLv~v~--~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~a 490 (758)
-.|||+|++ ++++...+++.+..++.. .+.+++++|+++............+.... . .+..++.++.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~l~~ 83 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHD---YDVPLGICSVLESEDINIFDSLTPSKIQA-K-------RKHVEDVVAE 83 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHH---HTCCEEEEEEECCCCTTCCCSSHHHHHHH-H-------HHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHh---cCCEEEEEEEEeCCCccccccCCHHHHHH-H-------HHHHHHHHHH
Confidence 458999999 999999999999988854 56788999999864321100000000000 0 0223455555
Q ss_pred HHHhhhccce-EEEEeEEecCCCchHHHHHHH-HHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 491 FEAFQQLSRV-SVRPMTAISSMSDMHEDICTT-AESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 491 f~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~-A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+.+..+..++ .++..+..+ .+..+.|++. |++.++|+||||.|++...+ .+ +|++.++|++++||||.|
T Consensus 84 ~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~------~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 84 YVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI------AGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS------CSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-ee------ecchHHHHHHhCCCCEEE
Confidence 5544444566 477777772 3999999999 99999999999999876553 23 788999999999999855
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.06 E-value=2.1e-10 Score=106.41 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=89.3
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.|||+|+++++....+++.+..++.. ...+++++|+++.... .. -....+ ...+ +..++..+.+++
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~--~~-~~~~~~----~~~~----~~~~~~~~~l~~ 68 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEA---HGARLIVVHAYEPVPD--YL-GEPFFE----EALR----RRLERAEGVLEE 68 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHH---HTCEEEEEEEECC---------------------C----HHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh---cCCEEEEEEEecCCCc--cc-cccchH----HHHH----HHHHHHHHHHHH
Confidence 38999999999999999999988854 5678999999873211 10 000000 0000 111233334444
Q ss_pred hhhccce-EEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 494 FQQLSRV-SVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 494 ~~~~~~v-~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+.+..++ +++..+..+ +..+.|++.|++.++|+||||.|++....+.+ +|++.++|++++||||.|
T Consensus 69 ~~~~~g~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~------~Gs~~~~vl~~~~~pVlv 135 (137)
T 2z08_A 69 ARALTGVPKEDALLLEG---VPAEAILQAARAEKADLIVMGTRGLGALGSLF------LGSQSQRVVAEAPCPVLL 135 (137)
T ss_dssp HHHHHCCCGGGEEEEES---SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS------SCHHHHHHHHHCSSCEEE
T ss_pred HHHHcCCCccEEEEEec---CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh------hccHHHHHHhcCCCCEEE
Confidence 4433445 555555544 89999999999999999999999876554433 789999999999999865
No 16
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.03 E-value=2.1e-10 Score=108.02 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=85.9
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFEA 493 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 493 (758)
.|||+|++++++...+++.+..++.. ...+++++|+++......+. ... ...... +....+..++..+.+++
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQ---IGARLSLIHVLDNIPMPDTP---YGT-AIPLDT-ETTYDAMLDVEKQKLSQ 78 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHH---HTCEEEEEEEEC-----------CTT-CCCSSS-CCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhh---cCCEEEEEEEEcCccccccc---ccc-ccCcCH-HHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999854 56889999998753221000 000 000000 00000112334444555
Q ss_pred hhhccceE-EEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 494 FQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 494 ~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
+.++.+++ ++..+..+ +..+.|++.|++.++|+||||.|++.... .+ +|++.++|++++||||-|+
T Consensus 79 ~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~------~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 79 IGNTLGIDPAHRWLVWG---EPREEIIRIAEQENVDLIVVGSHGRHGLA-LL------LGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp HHHHHTCCGGGEEEEES---CHHHHHHHHHHHTTCSEEEEEEC---------------CCCHHHHHHHHCSSEEEEE
T ss_pred HHHHcCCCcceEEEecC---CHHHHHHHHHHHcCCCEEEEecCCCCCcC-eE------ecchHHHHHHhCCCCEEEE
Confidence 54443444 34444444 89999999999999999999999876554 33 7889999999999998654
No 17
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.00 E-value=1.1e-09 Score=106.06 Aligned_cols=143 Identities=13% Similarity=0.125 Sum_probs=88.8
Q ss_pred ceEEEEEeecCC---------ChhhHHHHHHHhccCCC-CCCceEEEEEeeeccCCchhH-----HHHhhhhcCCCCCcC
Q 004372 413 QFRILACFHSAR---------NIPSTINLLEALRGIQK-SEGLCVYALHLMELSERSSAI-----LMVHKARRNGLPFWN 477 (758)
Q Consensus 413 elriLv~v~~~~---------~~~~li~La~~~~~~~~-~~p~~v~~lhlvel~~r~~~~-----~i~~~~~~~~~~~~~ 477 (758)
..|||+|+++++ ....+++.+..+... . ....+++++|+++........ ......+......
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~-~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 81 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVR-SNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSN-- 81 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTT-TCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSH--
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhc-ccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHH--
Confidence 358999999999 889999999886532 1 247889999998643211000 0000000000000
Q ss_pred CCCCCCcchHHHHHHHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHH
Q 004372 478 RGRQSNPNHIVVAFEAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQR 557 (758)
Q Consensus 478 ~~~~~~~~~i~~af~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~ 557 (758)
.++.++.++.+.+..+..++.++..+..+ +..+.|++.|++.++||||||.|++....+.+ +|++.++
T Consensus 82 ---~~~~~~~l~~~~~~~~~~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~------~Gsva~~ 149 (175)
T 2gm3_A 82 ---KAKGLHLLEFFVNKCHEIGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF------VGTVSAF 149 (175)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC--------------CHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHCCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh------cCchHHH
Confidence 01123344444443334577887777665 89999999999999999999999876554433 7899999
Q ss_pred HhhcCCCceEEEe
Q 004372 558 VLKHAPCSVGILI 570 (758)
Q Consensus 558 VL~~ApCsVgIlv 570 (758)
|++++||||.|+-
T Consensus 150 vl~~a~~pVlvv~ 162 (175)
T 2gm3_A 150 CVKHAECPVMTIK 162 (175)
T ss_dssp HHHHCSSCEEEEE
T ss_pred HHhCCCCCEEEEc
Confidence 9999999986643
No 18
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.00 E-value=1.1e-09 Score=102.01 Aligned_cols=131 Identities=8% Similarity=0.102 Sum_probs=89.5
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeec-cCCchhHH-HHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMEL-SERSSAIL-MVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel-~~r~~~~~-i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
.+||+|++++++...+++.+..++.. .+.+++++|+++. +....... ...+. ... ...++..+.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~l 69 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKR---HDAKLSIIHVDVNFSDLYTGLIDVNMSS-MQD---------RISTETQKAL 69 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHH---HTCEEEEEEEEECCGGGCCCCEEHHHHH-HTT---------CCCCHHHHHH
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHh---cCCEEEEEEEecCchhhhccccccchHH-HHH---------HHHHHHHHHH
Confidence 37999999999999999999988854 5678999999842 22111000 00000 000 1224445555
Q ss_pred HHhhhccceEE-EEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 492 EAFQQLSRVSV-RPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 492 ~~~~~~~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
+++.+..++++ +..+..+ +..+.|++.|++.++|+||||.| +.. .. .++++.++|++++||||.|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~-~~~----~~----~lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 70 LDLAESVDYPISEKLSGSG---DLGQVLSDAIEQYDVDLLVTGHH-QDF----WS----KLMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp HHHHHHSSSCCCCEEEEEE---CHHHHHHHHHHHTTCCEEEEEEC-CCC----HH----HHHHHHHHHHTTCCSEEEEE
T ss_pred HHHHHHcCCCceEEEEecC---CHHHHHHHHHHhcCCCEEEEeCC-Cch----hh----hhcchHHHHHhcCCCCEEEe
Confidence 55555445554 3444444 89999999999999999999998 542 21 16899999999999998664
No 19
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.00 E-value=1.1e-09 Score=101.61 Aligned_cols=133 Identities=9% Similarity=0.037 Sum_probs=94.4
Q ss_pred eEEEEEeecCCChhhHHHHHHHhc-cCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCC-CCcchHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALR-GIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQ-SNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~-~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~-~~~~~i~~af 491 (758)
.|||+|++++++...+++.+..++ .. ...+++++|+++................+. . . ++.++.++.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~l~~~ 71 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKD---ADCTLTLIHVKPEFMLYGEAVLAAYDEIEM--K-----EEEKAKLLTQKF 71 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTC---TTEEEEEEEEECCCCCCHHHHHHHHHHHHH--H-----HHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccC---CCCEEEEEEEecCCCcccccccCcHHHHHH--H-----HHHHHHHHHHHH
Confidence 379999999999999999999998 54 678899999998654332111000000000 0 0 1234455555
Q ss_pred HHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
.+..++.+++++..+..+ ++.+.|++.|+ ++|+||||.|++...++. . |++.++|++++||||-|
T Consensus 72 ~~~~~~~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~------~-Gs~~~~vl~~~~~pVlv 136 (138)
T 3idf_A 72 STFFTEKGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKI------F-ASHQDDFIQKAPIPVLI 136 (138)
T ss_dssp HHHHHTTTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSC------C-CCTTCHHHHHCSSCEEE
T ss_pred HHHHHHCCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHH------h-CcHHHHHHhcCCCCEEE
Confidence 555555678888877776 89999999999 999999999987654432 2 56778999999999865
No 20
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.78 E-value=1.8e-08 Score=93.30 Aligned_cols=129 Identities=9% Similarity=-0.030 Sum_probs=82.7
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEee-ec-cCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLM-EL-SERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlv-el-~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
.|||+|+++++....+++.+..++.. .+.+++++|++ +. +.. ... ............++. .++.++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~-~~~--~~~~~~~~~~~~~~~-~~~~~~~l~~~ 77 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEK---LGAELDILAVLEDVYNLE-RAN--VTFGLPFPPEIKEES-KKRIERRLREV 77 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTT---TCCEEEEEEECHHHHHHH-HHH--HHHCCCCCTHHHHHH-HHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHH---cCCeEEEEEEeccccccc-ccc--cccCCCCChHHHHHH-HHHHHHHHHHH
Confidence 58999999999999999999999854 67889999998 63 110 000 000000000000000 01123333333
Q ss_pred HHh-hhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEE
Q 004372 492 EAF-QQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGI 568 (758)
Q Consensus 492 ~~~-~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgI 568 (758)
+.+ .+..+ +++..+..+ +..+.|++.|++.++|+||||.|++ ++.++|++++||||.|
T Consensus 78 ~~~~~~~~~-~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~g~---------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 78 WEKLTGSTE-IPGVEYRIG---PLSEEVKKFVEGKGYELVVWACYPS---------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHHHSCCC-CCCEEEECS---CHHHHHHHHHTTSCCSEEEECSCCG---------------GGTHHHHHHSSSEEEE
T ss_pred HHHhhccCC-cceEEEEcC---CHHHHHHHHHHhcCCCEEEEeCCCC---------------chHHHHHHhCCCceEe
Confidence 221 22234 566655544 8999999999999999999999864 4677999999999855
No 21
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.69 E-value=2.1e-08 Score=105.51 Aligned_cols=136 Identities=18% Similarity=0.071 Sum_probs=91.2
Q ss_pred CceEEEEEeecCCC-------hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCc
Q 004372 412 AQFRILACFHSARN-------IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 484 (758)
Q Consensus 412 ~elriLv~v~~~~~-------~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~ 484 (758)
...|||+|+++++. ...+++.+..++.. .+.+++++|+++........ +... ..+ +..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~--~~~~------~~~----~~~ 197 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGL---AKATLHVISAHPSPMLSSAD--PTFQ------LSE----TIE 197 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHH---TTCEEEEEEEEC-----------CHH------HHH----HHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHH---cCCeEEEEEEecCccccccC--chhH------HHH----HHH
Confidence 34689999999998 78899998888754 56889999999754321100 0000 000 011
Q ss_pred chHHHHHHHhhhccceE-EEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC
Q 004372 485 NHIVVAFEAFQQLSRVS-VRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 563 (758)
Q Consensus 485 ~~i~~af~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap 563 (758)
++..+.++++.++.+++ ++..+..+ ++.+.|+++|++.++|+||||.|++.+..+.+ +|++.++|++++|
T Consensus 198 ~~~~~~l~~~~~~~g~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~------~Gsv~~~vl~~~~ 268 (290)
T 3mt0_A 198 ARYREACRTFQAEYGFSDEQLHIEEG---PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL------IGNTAEVVLDTLE 268 (290)
T ss_dssp HHHHHHHHHHHHHHTCCTTTEEEEES---CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC------SCHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHcCCCcceEEEecc---CHHHHHHHHHHhcCCCEEEECCCCCcCCccee------cchHHHHHHhcCC
Confidence 23334444454443442 33444444 89999999999999999999999887665444 8999999999999
Q ss_pred CceEEEec
Q 004372 564 CSVGILID 571 (758)
Q Consensus 564 CsVgIlvd 571 (758)
|||.|+-.
T Consensus 269 ~pVLvv~~ 276 (290)
T 3mt0_A 269 SDVLVLKP 276 (290)
T ss_dssp SEEEEECC
T ss_pred CCEEEECC
Confidence 99866533
No 22
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.55 E-value=1.3e-07 Score=100.44 Aligned_cols=146 Identities=14% Similarity=0.100 Sum_probs=92.9
Q ss_pred CceEEEEEeecCCC-------hhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCc
Q 004372 412 AQFRILACFHSARN-------IPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNP 484 (758)
Q Consensus 412 ~elriLv~v~~~~~-------~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~ 484 (758)
...|||+|+++++. ...+++.+..++.. .....+++++|+++........ .. ..... +....+..
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~-~~~~a~l~ll~v~~~~~~~~~~----~~--~~~~~-~~~~~~~~ 226 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHR-IQKDPDVHLLSAYPVAPINIAI----EL--PDFDP-NLYNNALR 226 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHH-HCSSCCEEEEEEECCCSCSCCT----TC--TTCCH-HHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHh-ccCCCeEEEEEeecCcchhhhc----cC--CcccH-HHHHHHHH
Confidence 34689999999884 47788887777753 1015678999999765432100 00 00000 00000112
Q ss_pred chHHHHHHHhhhccce-EEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCC
Q 004372 485 NHIVVAFEAFQQLSRV-SVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAP 563 (758)
Q Consensus 485 ~~i~~af~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~Ap 563 (758)
++..+.++++.++.++ .++..+.-+ +..+.|++.|++.++||||||.|++.++.+. .+|++.++|++++|
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~v~~g---~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~------~~Gsv~~~vl~~~~ 297 (319)
T 3olq_A 227 GQHLIAMKELRQKFSIPEEKTHVKEG---LPEQVIPQVCEELNAGIVVLGILGRTGLSAA------FLGNTAEQLIDHIK 297 (319)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEEES---CHHHHHHHHHHHTTEEEEEEECCSCCSTHHH------HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCCcccEEEecC---CcHHHHHHHHHHhCCCEEEEeccCccCCccc------cccHHHHHHHhhCC
Confidence 2334445555554333 233334434 8899999999999999999999988655443 38999999999999
Q ss_pred CceEEEecCCC
Q 004372 564 CSVGILIDRGL 574 (758)
Q Consensus 564 CsVgIlvdrg~ 574 (758)
|||.|+-.+|+
T Consensus 298 ~pVLvv~~~~~ 308 (319)
T 3olq_A 298 CDLLAIKPDGF 308 (319)
T ss_dssp SEEEEECCTTC
T ss_pred CCEEEECCCCC
Confidence 99877655554
No 23
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=98.54 E-value=1.4e-07 Score=99.33 Aligned_cols=120 Identities=13% Similarity=0.099 Sum_probs=91.8
Q ss_pred CceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHH
Q 004372 412 AQFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAF 491 (758)
Q Consensus 412 ~elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af 491 (758)
...+|++|+++++....+++.+..++.. .+.+++++|+.+... .++.++.+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~---~~~~l~ll~v~~~~~--------------------------~~~~l~~~ 219 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKK---TGGELHIIHVSEDGD--------------------------KTADLRVM 219 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHH---HTCEEEEEEECSSSC--------------------------CHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhh---cCCEEEEEEEccCch--------------------------HHHHHHHH
Confidence 3468999999999999999999888754 567889999986322 12233444
Q ss_pred HHhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 492 EAFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 492 ~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
.++.++.+++++..+.-+ +..+.|++.|++.++||||||.|++.+..+. .+|++.++|++++||||.|+
T Consensus 220 ~~~l~~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~------~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 220 EEVIGAEGIEVHVHIESG---TPHKAILAKREEINATTIFMGSRGAGSVMTM------ILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHHTTCCEEEEEECS---CHHHHHHHHHHHTTCSEEEEECCCCSCHHHH------HHHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHHcCCcEEEEEecC---CHHHHHHHHHHhcCcCEEEEeCCCCCCccce------eeCcHHHHHHhcCCCCEEEE
Confidence 444444567777666544 9999999999999999999999987654333 38999999999999998653
No 24
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=98.36 E-value=1.2e-06 Score=92.70 Aligned_cols=132 Identities=14% Similarity=0.138 Sum_probs=89.0
Q ss_pred ceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcc-hHHHHH
Q 004372 413 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPN-HIVVAF 491 (758)
Q Consensus 413 elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~-~i~~af 491 (758)
..+||+|+++++....+++.+..++.. ...+++++|+++..... .. ..... +.. .++.+ .+.+.+
T Consensus 171 ~~~Ilv~~D~s~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~-~~--------~~~~~-~~~-~~~~~~~l~~~~ 236 (309)
T 3cis_A 171 QAPVLVGVDGSSASELATAIAFDEASR---RNVDLVALHAWSDVDVS-EW--------PGIDW-PAT-QSMAEQVLAERL 236 (309)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHHH---TTCCEEEEEESCSSCCT-TC--------SSCCH-HHH-HHHHHHHHHHHH
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHHh---cCCEEEEEEEeeccccc-CC--------CcccH-HHH-HHHHHHHHHHHH
Confidence 358999999999999999998888754 45678999998643211 00 00000 000 00011 122222
Q ss_pred HHhhhc-cceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 492 EAFQQL-SRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 492 ~~~~~~-~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
+.+.+. .++.++..+..+ +..+.|++.|+ ++|+||||.|++..+.+.+ +|++.++|++++||||.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~g---~~~~~I~~~a~--~adliV~G~~~~~~~~~~l------~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 237 AGWQERYPNVAITRVVVRD---QPARQLVQRSE--EAQLVVVGSRGRGGYAGML------VGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp TTHHHHCTTSCEEEEEESS---CHHHHHHHHHT--TCSEEEEESSCSSCCTTCS------SCHHHHHHHHHCSSCEEEE
T ss_pred HHHHhhCCCCcEEEEEEcC---CHHHHHHHhhC--CCCEEEECCCCCCCccccc------cCcHHHHHHhcCCCCEEEe
Confidence 233222 467777766654 89999999997 8999999999887665544 8899999999999998653
No 25
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.35 E-value=1.6e-06 Score=80.62 Aligned_cols=135 Identities=10% Similarity=0.129 Sum_probs=83.1
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCccc--ccC--CcCccccHHHHHHHHHhhcCCCC-
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTV--SVD--MAGNASMDEEVLSEFKLKTSRNG- 659 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~--~~~--~~~~~~~d~~~~~e~~~~~~~~~- 659 (758)
..++|++++.|.++.+.|+++|.++|++.+.+++++++.+......... ... .+..++..++.++++.......+
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3579999999999999999999999999999999999987543210000 000 01112233456666666543221
Q ss_pred -ceEEEEEEecChHHHHHH-HHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 660 -SVRYEERLVRNTAETIAV-IREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 660 -~v~y~e~~v~~~~e~~~~-i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
++.+. ...++..+.+.. ..+..++||+|+|+++ ..++.+| -+|.+.+-+... + ++||||.
T Consensus 84 ~~~~~~-~~~g~~~~~I~~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~---~~~pVlvV~ 146 (146)
T 3s3t_A 84 PNLKTE-ISYGIPKHTIEDYAKQHPEIDLIVLGATG----TNSPHRV----AVGSTTSYVVDH---APCNVIVIR 146 (146)
T ss_dssp CCCEEE-EEEECHHHHHHHHHHHSTTCCEEEEESCC----SSCTTTC----SSCHHHHHHHHH---CSSEEEEEC
T ss_pred cceEEE-EecCChHHHHHHHHHhhcCCCEEEECCCC----CCCcceE----EEcchHHHHhcc---CCCCEEEeC
Confidence 33322 233444443322 2222339999999997 3344443 378777777753 3 6899873
No 26
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.26 E-value=6.4e-06 Score=75.79 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=78.4
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-hCCCeEEEEEEEeecccccCccc-ccC--CcCcc-ccHHHHHHHHHhhcCCC-Cc
Q 004372 587 YTITVLFFGGRDDREALACGARMA-EHPGISFIVIRFLLAADAIGNTV-SVD--MAGNA-SMDEEVLSEFKLKTSRN-GS 660 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma-~~~~v~ltvvr~~~~~~~~~~~~-~~~--~~~~~-~~d~~~~~e~~~~~~~~-~~ 660 (758)
+||++++.|.++.+.|+++|.++| ++.+.+++++++.+......... ... .+..+ +..++.++++....... -+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 689999999999999999999999 99999999999986543210000 000 00011 22345566666554321 12
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEE
Q 004372 661 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 730 (758)
Q Consensus 661 v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvv 730 (758)
+. .+...++..+.+ ++...++||+++|+++ ..++.+| +|.+.+-+... + ++||||
T Consensus 82 ~~-~~v~~g~~~~~I--~~~a~~~dliV~G~~~----~~~~~~~-----~Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 82 PF-VVIKEGEPVEMV--LEEAKDYNLLIIGSSE----NSFLNKI-----FASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp CE-EEEEESCHHHHH--HHHHTTCSEEEEECCT----TSTTSSC-----CCCTTCHHHHH---CSSCEEEE
T ss_pred eE-EEEecCChHHHH--HHHHhcCCEEEEeCCC----cchHHHH-----hCcHHHHHHhc---CCCCEEEe
Confidence 22 222334544433 3322269999999997 3334333 27766666652 3 688887
No 27
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.26 E-value=7.8e-07 Score=84.33 Aligned_cols=128 Identities=15% Similarity=0.108 Sum_probs=81.2
Q ss_pred cceEEEEeccC-CcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCC-CCceE
Q 004372 585 VSYTITVLFFG-GRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSR-NGSVR 662 (758)
Q Consensus 585 ~~~~I~v~f~G-G~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~-~~~v~ 662 (758)
..++|++++.| .+..+.|+++|.++|+..+.+|+++++.+..... .+..++..++.++++.+.... ...+.
T Consensus 23 m~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~g~~~~ 95 (155)
T 3dlo_A 23 IYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT-------KDEDIIEAKETLSWAVSIIRKEGAEGE 95 (155)
T ss_dssp CCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS-------CHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc-------cHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 35799999999 9999999999999999999999999998643221 111122234555555544321 12333
Q ss_pred EEEEEe--cChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 663 YEERLV--RNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 663 y~e~~v--~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
. +..+ ++..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-+... + ++||||+
T Consensus 96 ~-~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g----~~~~~~~----~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 96 E-HLLVRGKEPPDDIVDFADEVDAIAIVIGIRK----RSPTGKL----IFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp E-EEEESSSCHHHHHHHHHHHTTCSEEEEECCE----ECTTSCE----ECCHHHHHHHHH---CSSCEEEEC
T ss_pred E-EEEecCCCHHHHHHHHHHHcCCCEEEECCCC----CCCCCCE----EeccHHHHHHHh---CCCCEEEeC
Confidence 2 2223 4554433333222249999999987 3334333 368777777752 3 6899884
No 28
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.22 E-value=2.3e-06 Score=79.60 Aligned_cols=134 Identities=16% Similarity=0.181 Sum_probs=80.3
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeeccc-ccCc----cccc-C--CcCccccHHHHHHHHHhhcCC
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAAD-AIGN----TVSV-D--MAGNASMDEEVLSEFKLKTSR 657 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~-~~~~----~~~~-~--~~~~~~~d~~~~~e~~~~~~~ 657 (758)
.+||++++.|.++.+.|+++|.++|++.+.+++++++.+... .... .... + .+..++..++.+++++.....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999999999999999999999986432 0000 0000 0 111122334556666554321
Q ss_pred -CCce---EEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCceeEEEE
Q 004372 658 -NGSV---RYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLII 730 (758)
Q Consensus 658 -~~~v---~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~SvLvv 730 (758)
+-++ . .+...++..+.+....+..++||+++|+++ ..++.+| -+|.+.+-+...- . ++||||
T Consensus 82 ~g~~~~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~~-~-~pVlvV 147 (147)
T 3hgm_A 82 LGVPADKVR-AFVKGGRPSRTIVRFARKRECDLVVIGAQG----TNGDKSL----LLGSVAQRVAGSA-H-CPVLVV 147 (147)
T ss_dssp TTCCGGGEE-EEEEESCHHHHHHHHHHHTTCSEEEECSSC----TTCCSCC----CCCHHHHHHHHHC-S-SCEEEC
T ss_pred cCCCccceE-EEEecCCHHHHHHHHHHHhCCCEEEEeCCC----Cccccce----eeccHHHHHHhhC-C-CCEEEC
Confidence 1122 3 233345555533333222249999999997 3344443 3677777666521 1 578775
No 29
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.16 E-value=6.4e-06 Score=78.62 Aligned_cols=136 Identities=19% Similarity=0.256 Sum_probs=80.3
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEE--EEeecccc-cCccc-ccC-CcCccccHHHHHHHHHhhcCCCC
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVI--RFLLAADA-IGNTV-SVD-MAGNASMDEEVLSEFKLKTSRNG 659 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvv--r~~~~~~~-~~~~~-~~~-~~~~~~~d~~~~~e~~~~~~~~~ 659 (758)
..++|++++.|.+..+.|+++|.++|+ .+.+++++ ++.+.... ..... ..+ .+..++..++.+++++......+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG 94 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999 99999999 88753321 00000 000 11122334566666665543211
Q ss_pred -c-eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCceeEEEEee
Q 004372 660 -S-VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQ 732 (758)
Q Consensus 660 -~-v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~SvLvvqq 732 (758)
. +.+. ...++..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-+...- . ++||||..
T Consensus 95 v~~v~~~-v~~G~~~~~I~~~a~~~~~DLIV~G~~g----~~~~~~~----~lGSva~~vl~~a-~-~PVlvV~~ 158 (163)
T 1tq8_A 95 AKNVEER-PIVGAPVDALVNLADEEKADLLVVGNVG----LSTIAGR----LLGSVPANVSRRA-K-VDVLIVHT 158 (163)
T ss_dssp CCEEEEE-EECSSHHHHHHHHHHHTTCSEEEEECCC----CCSHHHH----HTBBHHHHHHHHT-T-CEEEEECC
T ss_pred CCeEEEE-EecCCHHHHHHHHHHhcCCCEEEECCCC----CCcccce----eeccHHHHHHHhC-C-CCEEEEeC
Confidence 2 3322 2334444432222222349999999998 3344443 3788888777631 1 79999974
No 30
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.15 E-value=4.7e-06 Score=79.81 Aligned_cols=138 Identities=13% Similarity=-0.026 Sum_probs=83.3
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcc-cc---------cCCcCc---cccHHHHHHHHH
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNT-VS---------VDMAGN---ASMDEEVLSEFK 652 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~-~~---------~~~~~~---~~~d~~~~~e~~ 652 (758)
.++|++++.|.++.+.|+++|.++|++.+.+|+++++.+........ .. ..++.+ ++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999998643211000 00 000111 122235556655
Q ss_pred hhcCC-CCceEE-EEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEE
Q 004372 653 LKTSR-NGSVRY-EERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLI 729 (758)
Q Consensus 653 ~~~~~-~~~v~y-~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLv 729 (758)
.+... +-++.. .....++..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-+... + ++|||
T Consensus 85 ~~~~~~g~~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g----~~~~~~~----~~Gsv~~~vl~~---~~~PVlv 153 (170)
T 2dum_A 85 EEVKRAFRAKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRG----KLSLSHE----FLGSTVMRVLRK---TKKPVLI 153 (170)
T ss_dssp HHHHHHTTCSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCC----CCC--TT----CCCHHHHHHHHH---CSSCEEE
T ss_pred HHHHHcCCceeeeeEEecCChHHHHHHHHHHcCCCEEEECCCC----CCccccc----eechHHHHHHHh---CCCCEEE
Confidence 54321 123333 123334554433333222349999999997 3344443 478888877763 3 79999
Q ss_pred Eeeec
Q 004372 730 IQQYS 734 (758)
Q Consensus 730 vqq~~ 734 (758)
|....
T Consensus 154 v~~~~ 158 (170)
T 2dum_A 154 IKEVD 158 (170)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 97543
No 31
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.14 E-value=9.1e-06 Score=77.04 Aligned_cols=136 Identities=15% Similarity=0.066 Sum_probs=82.9
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecc-----cc-cCc-cc--c-cCC-----cCc---cccHHHH
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAA-----DA-IGN-TV--S-VDM-----AGN---ASMDEEV 647 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~-----~~-~~~-~~--~-~~~-----~~~---~~~d~~~ 647 (758)
.+||++++.|.++.+.|+++|.++|+..+.+++++++.+.. .. ... .. . ..+ +.+ ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999998654 10 000 00 0 000 000 1122355
Q ss_pred HHHHHhhcCC-CCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCcee
Q 004372 648 LSEFKLKTSR-NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTAS 726 (758)
Q Consensus 648 ~~e~~~~~~~-~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~S 726 (758)
+++++.+... +-++.+. ...++..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-+...- . ++
T Consensus 85 l~~~~~~~~~~g~~~~~~-v~~G~~~~~I~~~a~~~~~dlIV~G~~g----~~~~~~~----~~GSv~~~vl~~~-~-~p 153 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKDI-IVVGIPHEEIVKIAEDEGVDIIIMGSHG----KTNLKEI----LLGSVTENVIKKS-N-KP 153 (162)
T ss_dssp HHHHHHHHHHTTCEEEEE-EEEECHHHHHHHHHHHTTCSEEEEESCC----SSCCTTC----SSCHHHHHHHHHC-C-SC
T ss_pred HHHHHHHHHHcCCceEEE-EcCCCHHHHHHHHHHHcCCCEEEEcCCC----CCCccce----EecchHHHHHHhC-C-CC
Confidence 6666554321 1123322 2334554433333222349999999997 3445444 4788888877631 2 79
Q ss_pred EEEEee
Q 004372 727 VLIIQQ 732 (758)
Q Consensus 727 vLvvqq 732 (758)
||||..
T Consensus 154 Vlvv~~ 159 (162)
T 1mjh_A 154 VLVVKR 159 (162)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999964
No 32
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.12 E-value=6.1e-06 Score=75.93 Aligned_cols=132 Identities=20% Similarity=0.155 Sum_probs=79.7
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcC---ccccHHHHHHHHHhhcCCCCceE
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAG---NASMDEEVLSEFKLKTSRNGSVR 662 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~---~~~~d~~~~~e~~~~~~~~~~v~ 662 (758)
.++|++++.|.++++.|+++|.++|+..+.+++++++.+....... ....++. .++..++.++++..+. +-.++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~ 79 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLG-EPFFEEALRRRLERAEGVLEEARALT-GVPKED 79 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC---------------CHHHHHHHHHHHHHHHHH-CCCGGG
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcccc-ccchHHHHHHHHHHHHHHHHHHHHHc-CCCccE
Confidence 3699999999999999999999999999999999999863221100 0000111 1122345666666541 110333
Q ss_pred EEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 663 YEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 663 y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
+. ...++..+.+....+..++||+++|+++ .+++.++ -+|.+.+-+... + ++||||.
T Consensus 80 ~~-~~~g~~~~~I~~~a~~~~~dliV~G~~~----~~~~~~~----~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 80 AL-LLEGVPAEAILQAARAEKADLIVMGTRG----LGALGSL----FLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp EE-EEESSHHHHHHHHHHHTTCSEEEEESSC----TTCCSCS----SSCHHHHHHHHH---CSSCEEEEC
T ss_pred EE-EEecCHHHHHHHHHHHcCCCEEEECCCC----Cchhhhh----hhccHHHHHHhc---CCCCEEEeC
Confidence 33 2334555533333232349999999997 3344433 378887777763 3 6899873
No 33
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.06 E-value=7.3e-06 Score=76.57 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=79.0
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccc---cCcc--cccCCcCc---cccHHHHHHHHHhhcCC
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADA---IGNT--VSVDMAGN---ASMDEEVLSEFKLKTSR 657 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~---~~~~--~~~~~~~~---~~~d~~~~~e~~~~~~~ 657 (758)
.+||++++.|.++.+.|+++|.++|++.+.+|+++++.+.... .... ....++.. ++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999999999999999864321 0000 00001111 12233556666655422
Q ss_pred CCceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCceeEEEEeee
Q 004372 658 NGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFSTASVLIIQQY 733 (758)
Q Consensus 658 ~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~~SvLvvqq~ 733 (758)
..+. .+...++..+.+....+..++||+++|+++ .+++. | -+|.+.+-+...- . ++||||...
T Consensus 86 -~~~~-~~~~~g~~~~~I~~~a~~~~~dliV~G~~~----~~~~~-~----~~Gs~~~~vl~~~-~-~pVlvv~~~ 148 (150)
T 3tnj_A 86 -DPAH-RWLVWGEPREEIIRIAEQENVDLIVVGSHG----RHGLA-L----LLGSTANSVLHYA-K-CDVLAVRLR 148 (150)
T ss_dssp -CGGG-EEEEESCHHHHHHHHHHHTTCSEEEEEEC-----------------CCCHHHHHHHHC-S-SEEEEEECC
T ss_pred -Ccce-EEEecCCHHHHHHHHHHHcCCCEEEEecCC----CCCcC-e----EecchHHHHHHhC-C-CCEEEEeCC
Confidence 2122 223345555543333332349999999987 23333 3 4788887777631 1 799999753
No 34
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=98.06 E-value=4.2e-06 Score=86.47 Aligned_cols=114 Identities=15% Similarity=0.153 Sum_probs=82.2
Q ss_pred ceEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCCcchHHHHHH
Q 004372 413 QFRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSNPNHIVVAFE 492 (758)
Q Consensus 413 elriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~af~ 492 (758)
..+||+|+++++....+++.+..++.. ...+++++|+.+..+ + .++.++.+.
T Consensus 154 ~~~ilv~~d~s~~~~~al~~a~~la~~---~~a~l~ll~v~~~~~---------~----------------~~~~l~~~~ 205 (268)
T 3ab8_A 154 LEGALLGYDASESAVRALHALAPLARA---LGLGVRVVSVHEDPA---------R----------------AEAWALEAE 205 (268)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHH---HTCCEEEEEECSSHH---------H----------------HHHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHhhhc---CCCEEEEEEEcCcHH---------H----------------HHHHHHHHH
Confidence 358999999999999999988877643 345589999975320 0 112233333
Q ss_pred HhhhccceEEEEeEEecCCCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEE
Q 004372 493 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGIL 569 (758)
Q Consensus 493 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIl 569 (758)
++.++.+++++..+.- .++.+.|++.|++. |+||||. +..+.+ +|++.++|++++||||.|+
T Consensus 206 ~~l~~~~~~~~~~~~~---g~~~~~i~~~a~~~--dliV~G~----~~~~~~------~Gs~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 206 AYLRDHGVEASALVLG---GDAADHLLRLQGPG--DLLALGA----PVRRLV------FGSTAERVIRNAQGPVLTA 267 (268)
T ss_dssp HHHHHTTCCEEEEEEC---SCHHHHHHHHCCTT--EEEEEEC----CCSCCS------SCCHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCCceEEEEeC---CChHHHHHHHHHhC--CEEEECC----cccccE------eccHHHHHHhcCCCCEEEe
Confidence 4444456777766554 48999999999999 9999998 233333 7889999999999998653
No 35
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.06 E-value=1.3e-05 Score=74.14 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred eEEEEeccCCcC--hHHHHHHHHHHhhCCCeEEEEEEEeecccccCcc--cccC-CcCccccHH---HHHHHHHhhcCCC
Q 004372 587 YTITVLFFGGRD--DREALACGARMAEHPGISFIVIRFLLAADAIGNT--VSVD-MAGNASMDE---EVLSEFKLKTSRN 658 (758)
Q Consensus 587 ~~I~v~f~GG~d--dreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~--~~~~-~~~~~~~d~---~~~~e~~~~~~~~ 658 (758)
+||++++.|.++ .+.|+++|.++|++.+.+++++++.+........ .... .+..++..+ +.++++..+....
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 9999999999999999999999998653211000 0000 011111222 3333444333211
Q ss_pred -CceEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEE
Q 004372 659 -GSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLII 730 (758)
Q Consensus 659 -~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvv 730 (758)
.++.+. ...++..+.+....+..++||+++|+++ + |+.+| -+|.+.+-+... + ++||||
T Consensus 82 ~~~v~~~-~~~g~~~~~I~~~a~~~~~dliV~G~~~-~----~~~~~----~~Gs~~~~v~~~---~~~pVlvv 142 (143)
T 3fdx_A 82 EDRMHFH-VAEGSPKDKILALAKSLPADLVIIASHR-P----DITTY----LLGSNAAAVVRH---AECSVLVV 142 (143)
T ss_dssp GGGEEEE-EEESCHHHHHHHHHHHTTCSEEEEESSC-T----TCCSC----SSCHHHHHHHHH---CSSEEEEE
T ss_pred CCceEEE-EEecChHHHHHHHHHHhCCCEEEEeCCC-C----CCeee----eeccHHHHHHHh---CCCCEEEe
Confidence 123332 3334555544333332349999999986 2 23333 478887777763 3 689987
No 36
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.02 E-value=6.5e-06 Score=77.59 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=80.5
Q ss_pred CcceEEEEecc--CCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccC--CcCccccHHHHHHHHHhhcCCCC
Q 004372 584 NVSYTITVLFF--GGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVD--MAGNASMDEEVLSEFKLKTSRNG 659 (758)
Q Consensus 584 ~~~~~I~v~f~--GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~--~~~~~~~d~~~~~e~~~~~~~~~ 659 (758)
...+||++++. |.++.+.|+++|.++|+..+.+++++++.+............ .+..++..++.+++++.+....+
T Consensus 13 ~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 92 (156)
T 3fg9_A 13 LVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRG 92 (156)
T ss_dssp CCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34679999999 999999999999999999999999999986533210000000 01112223355566554432111
Q ss_pred --ceEEEEEEe-cChHHHHHHHHh-c--cCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEe
Q 004372 660 --SVRYEERLV-RNTAETIAVIRE-V--SRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQ 731 (758)
Q Consensus 660 --~v~y~e~~v-~~~~e~~~~i~~-~--~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvq 731 (758)
.+.+. ... ++..+ ++++. . .++||+++|+++ -.++. + -+|.+.+-+... + ++||||.
T Consensus 93 ~~~~~~~-v~~~g~~~~--~I~~~~a~~~~~DlIV~G~~g----~~~~~-~----~~Gs~~~~vl~~---a~~PVlvV~ 156 (156)
T 3fg9_A 93 VNQVEPL-VYEGGDVDD--VILEQVIPEFKPDLLVTGADT----EFPHS-K----IAGAIGPRLARK---APISVIVVR 156 (156)
T ss_dssp CSSEEEE-EEECSCHHH--HHHHTHHHHHCCSEEEEETTC----CCTTS-S----SCSCHHHHHHHH---CSSEEEEEC
T ss_pred CCceEEE-EEeCCCHHH--HHHHHHHHhcCCCEEEECCCC----CCccc-e----eecchHHHHHHh---CCCCEEEeC
Confidence 23322 222 44444 33333 2 339999999997 23332 2 388888877763 3 7999983
No 37
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.91 E-value=4.1e-05 Score=70.53 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=79.2
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeec-ccccCcc--cccC--CcCccccHHHHHHHHHhhcCCCCc
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLA-ADAIGNT--VSVD--MAGNASMDEEVLSEFKLKTSRNGS 660 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~-~~~~~~~--~~~~--~~~~~~~d~~~~~e~~~~~~~~~~ 660 (758)
.++|++++.|.++++.|+++|.++|+..+.+++++++.+. ....... ...+ .+..++.-++.++++..+... .
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~ 79 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDY--P 79 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSSS--C
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcCC--C
Confidence 3699999999999999999999999999999999999843 2111000 0000 111122234666676655421 1
Q ss_pred eEEEEEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCCCCc-eeEEEEee
Q 004372 661 VRYEERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLEFST-ASVLIIQQ 732 (758)
Q Consensus 661 v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d~~~-~SvLvvqq 732 (758)
+.......++..+.+....+..++||+++|+++ + ++. .+|.+.+-+... + ++||||..
T Consensus 80 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~----~~~------~lgs~~~~vl~~---~~~pVlvv~~ 138 (141)
T 1jmv_A 80 ISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHHQ-D----FWS------KLMSSTRQVMNT---IKIDMLVVPL 138 (141)
T ss_dssp CCCEEEEEECHHHHHHHHHHHTTCCEEEEEECC-C----CHH------HHHHHHHHHHTT---CCSEEEEEEC
T ss_pred ceEEEEecCCHHHHHHHHHHhcCCCEEEEeCCC-c----hhh------hhcchHHHHHhc---CCCCEEEeeC
Confidence 111222335555544333332349999999883 3 221 156666666652 3 79999974
No 38
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.89 E-value=0.0032 Score=67.07 Aligned_cols=262 Identities=16% Similarity=0.116 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHhhccCchhHHhccch---hHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhHHHHHHHHHHhhccH
Q 004372 96 LANLGLIFFMFLVGLELDPKSLRQTGKK---ALGIAIAGISLPFALGIGSSFLLRETISKGVDSTSFLVFMGVALSITAF 172 (758)
Q Consensus 96 l~~lgl~~~lF~~Gle~d~~~l~~~~~~---~~~i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~l~~~ls~Ts~ 172 (758)
.....+.+.||..|++++.+++++..|+ .....+..+++--++++.++..+ +.+. .....+.+. ..+++..
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~----~l~~-~~~~Glil~-~~~P~~~ 117 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL----NLPA-EIAVGVILV-GCCPGGT 117 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCH-HHHHHHHHH-HHSCCCT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh----CCCh-HHHHHHHHH-hcCCchh
Confidence 4456788899999999999999954433 33333334443333444444433 1111 111111111 1222221
Q ss_pred HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 004372 173 PVLARILAELKLLTADVGRMAMSAAAVNDVAAWILLALAVALSGSGEPVEETYVCATLAAVLAAGFITDAIGIHAMFGAF 252 (758)
Q Consensus 173 ~vv~~iL~elkll~s~~g~lals~a~i~D~~~~~ll~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~la~~~g~~~~lgaf 252 (758)
.+.+++.+ .+.+. .++.+...++.+++.+.+-+...+..+ ... +....-+ +.+.+ -.++-|+
T Consensus 118 --~s~v~t~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g-~~~-~v~~~~~---------~~~l~--~~vllP~ 179 (332)
T 3zux_A 118 --ASNVMTYL--ARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAG-EML-EIQAAGM---------LMSIV--KMVLLPI 179 (332)
T ss_dssp --HHHHHHHH--TTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-GGG-HHHHHHH---------HHHHH--HHTHHHH
T ss_pred --HHHHHHHH--hCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcC-Ccc-CCCHHHH---------HHHHH--HHHHHHH
Confidence 12223322 23333 467777788888888776655544322 111 1111000 00000 1256678
Q ss_pred HHHHhcCCC-CChhHHHHHHHHHHHHH-HhHHHHHHHhcccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 004372 253 VVGVLVPKE-GPFANALVEKVEDLVSG-IFLPLYFVSSGLKTNIATIQGLQSWGLLALVILTACLGKIVGTFVVSLSFKV 330 (758)
Q Consensus 253 ~aGL~l~~~-~~~~~~l~~ki~~~~~~-~~lPlfF~~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~~~~~~~~~ 330 (758)
++|..+.+. ++..++....+..+... +.+-++.+ ++.+ ...+.. ..+. +....++..+.-+..++..++.+|.
T Consensus 180 ~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~-~~~~--~~~~~~-~~~~-v~~~~~l~~~~~~~lg~~~~r~~~~ 254 (332)
T 3zux_A 180 VLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAV-VGAS--KGKIME-SGLL-IFAVVVLHNGIGYLLGFFAAKWTGL 254 (332)
T ss_dssp HHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHH-HHHT--HHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHH-HHhh--hHHHHh-ccHH-HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888877642 22223333222222111 12212211 1111 222221 1222 2233344445566777888999999
Q ss_pred ChHHHHHHHHHHH-HHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHcc
Q 004372 331 PLREALALGILMN-TKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVYK 390 (758)
Q Consensus 331 ~~~~~~~lgl~l~-~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~~ 390 (758)
+.+|+..+++..+ .+....+.++...... ++...-...+..+....+. .++...|+
T Consensus 255 ~~~~~~ti~~e~G~qNs~lai~lA~~~F~~---~p~~alp~~iy~~~q~i~~-~~la~~~~ 311 (332)
T 3zux_A 255 PYDAQKALTIEVGMQNSGLAAALAAAHFAA---APVVAVPGALFSVWHNISG-SLLATYWA 311 (332)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHHSTT---CGGGGHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CHhHhhhhhhhhhhccHHHHHHHHHHHcCC---CchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999888444 3445666666554421 2233333334554544443 34444443
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.77 E-value=5.7e-05 Score=69.32 Aligned_cols=105 Identities=16% Similarity=0.059 Sum_probs=62.9
Q ss_pred cceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEe-ec-c-cc-cCccccc-CCcC---ccccHHHHHHHHHhh--
Q 004372 585 VSYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFL-LA-A-DA-IGNTVSV-DMAG---NASMDEEVLSEFKLK-- 654 (758)
Q Consensus 585 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~-~~-~-~~-~~~~~~~-~~~~---~~~~d~~~~~e~~~~-- 654 (758)
..++|++++.|.++.+.|+++|.++|+..+.+++++++. +. . .. ....... .++. .++..++.++++ .+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 81 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL 81 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence 357999999999999999999999999999999999998 52 1 00 0000000 0000 111223555565 43
Q ss_pred cCCCCceEEEEEEecChHHHHHHHHhcc--CCCEEEEccCC
Q 004372 655 TSRNGSVRYEERLVRNTAETIAVIREVS--RCNLLLVGRMP 693 (758)
Q Consensus 655 ~~~~~~v~y~e~~v~~~~e~~~~i~~~~--~~DL~iVGr~~ 693 (758)
....+++.+. ...++..+ .+++... ++||+++|+++
T Consensus 82 ~~~~~~~~~~-~~~g~~~~--~I~~~a~~~~~dliV~G~~g 119 (138)
T 1q77_A 82 TGSTEIPGVE-YRIGPLSE--EVKKFVEGKGYELVVWACYP 119 (138)
T ss_dssp HSCCCCCCEE-EECSCHHH--HHHHHHTTSCCSEEEECSCC
T ss_pred hccCCcceEE-EEcCCHHH--HHHHHHHhcCCCEEEEeCCC
Confidence 1111144433 23344444 3334333 39999999987
No 40
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.71 E-value=0.0002 Score=68.68 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=74.7
Q ss_pred cceEEEEeccCCc---------ChHHHHHHHHHHh-hC--CCeEEEEEEEeecccccCc---cc-c-cC--C---cCccc
Q 004372 585 VSYTITVLFFGGR---------DDREALACGARMA-EH--PGISFIVIRFLLAADAIGN---TV-S-VD--M---AGNAS 642 (758)
Q Consensus 585 ~~~~I~v~f~GG~---------ddreAL~~a~rma-~~--~~v~ltvvr~~~~~~~~~~---~~-~-~~--~---~~~~~ 642 (758)
..++|++++.|.+ ..+.|+++|.+++ +. .+.+|+++++.+....... .. . .. + +..++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3579999999999 8899999999986 54 6999999999753211000 00 0 00 0 01111
Q ss_pred cHHHHHHHHHhhcCCCCceEEE-EEEecChHHHHHHHHhccCCCEEEEccCCCchhccccccCCCCCccccchhhhhcCC
Q 004372 643 MDEEVLSEFKLKTSRNGSVRYE-ERLVRNTAETIAVIREVSRCNLLLVGRMPDGELALALSTRSDCLELGPVGSLLTSLE 721 (758)
Q Consensus 643 ~d~~~~~e~~~~~~~~~~v~y~-e~~v~~~~e~~~~i~~~~~~DL~iVGr~~~~~~~~gl~~w~e~~eLG~iGd~las~d 721 (758)
..++.++++...... ..+.+. +...++..+.+....+..++||+|+|+++ ..++.+| -+|.+.+-+...-
T Consensus 84 ~~~~~l~~~~~~~~~-~g~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g----~~~~~~~----~~Gsva~~vl~~a 154 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE-IGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRG----LGRFQKV----FVGTVSAFCVKHA 154 (175)
T ss_dssp HHHHHHHHHHHHHHH-HTCEEEEEEEESCHHHHHHHHHHHHCCSEEEEEECC----CC------------CHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-CCCceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCC----CChhhhh----hcCchHHHHHhCC
Confidence 233566666554321 122222 22234444433222222249999999997 3444444 3788887777631
Q ss_pred CCceeEEEEeee
Q 004372 722 FSTASVLIIQQY 733 (758)
Q Consensus 722 ~~~~SvLvvqq~ 733 (758)
. ++||||...
T Consensus 155 -~-~pVlvv~~~ 164 (175)
T 2gm3_A 155 -E-CPVMTIKRN 164 (175)
T ss_dssp -S-SCEEEEECC
T ss_pred -C-CCEEEEcCC
Confidence 1 799999753
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.94 E-value=0.11 Score=53.14 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=140.0
Q ss_pred eEEEEEeecCCChhhHHHHHHHhccCCCCCCceEEEEEeeeccCCchhHHHHhhhhcCCCCCcCCCCCCC-cchHHHHHH
Q 004372 414 FRILACFHSARNIPSTINLLEALRGIQKSEGLCVYALHLMELSERSSAILMVHKARRNGLPFWNRGRQSN-PNHIVVAFE 492 (758)
Q Consensus 414 lriLv~v~~~~~~~~li~La~~~~~~~~~~p~~v~~lhlvel~~r~~~~~i~~~~~~~~~~~~~~~~~~~-~~~i~~af~ 492 (758)
-++||+...|..-..++.++..+... ...+.+.++..- ++ . +. .++ +..++
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~----~G~ltv~~i~p~-~~-~---------------------~~l~~q-l~~l~ 72 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYP----KGSVKLLGLAGN-TD-K---------------------ENLLSQ-LPSIS 72 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTT----TCEEEEEECC----C-T---------------------TCHHHH-HHHHH
T ss_pred CcEEEecCCchhhhhHHHHHHHhccC----ceeEEEEEEccC-CC-c---------------------cHHHHH-HHHHH
Confidence 47999999999999999999999864 556788887521 11 0 11 233 37778
Q ss_pred HhhhccceEEEEeEEecCCCchHHHHHHHHHhcC-----ccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceE
Q 004372 493 AFQQLSRVSVRPMTAISSMSDMHEDICTTAESKR-----AAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVG 567 (758)
Q Consensus 493 ~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~-----adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVg 567 (758)
+|-++.++..-..+..+ .+..+++....+..+ .+.|+|+|..+.. ....++.+.++..+. .-.|-
T Consensus 73 ~~l~~r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e-------~~~~y~~~i~~~~~~-~~nVl 142 (294)
T 3g40_A 73 EGFQEEGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRD-------RDEEIREIIRKASMY-RMGVL 142 (294)
T ss_dssp HHHHHTTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGG-------GHHHHHHHHHHHHHT-TCEEE
T ss_pred HHHHhCCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChh-------hhHHHHHHHHHHHHh-CceEE
Confidence 88888888776666666 588999999888854 7999999965431 223478888776544 66665
Q ss_pred EEecCCCCCCcccccCCcceEEEEeccC--------C--cChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCC
Q 004372 568 ILIDRGLGGTTQVSASNVSYTITVLFFG--------G--RDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDM 637 (758)
Q Consensus 568 Ilvdrg~~~~~~~~~~~~~~~I~v~f~G--------G--~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~ 637 (758)
||-+.... .....++|=+=.-| | .+-..++-+|-.+.++.++++.++++++++.+
T Consensus 143 il~~~~~~------~fg~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~de~a--------- 207 (294)
T 3g40_A 143 LFSKHPQA------GLGRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPTAIQ--------- 207 (294)
T ss_dssp EEECCTTT------TTTTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSSHHH---------
T ss_pred EEecCCcc------CCCCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCCHHH---------
Confidence 65432111 11223566665333 2 35567999999999999999999999964332
Q ss_pred cCccccHHHHHHHHHhhcCCCCceEEEEEEecChHHHHHHHHhccCCCEEEEccCC
Q 004372 638 AGNASMDEEVLSEFKLKTSRNGSVRYEERLVRNTAETIAVIREVSRCNLLLVGRMP 693 (758)
Q Consensus 638 ~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v~~~~e~~~~i~~~~~~DL~iVGr~~ 693 (758)
++.-+.+++++.+..-- +...+ + |. .+..+++++...-||+++|-..
T Consensus 208 ---~~~a~~~l~~Lv~~~Ri-~a~~~--v-v~--~~F~~il~~s~~ADL~flGl~~ 254 (294)
T 3g40_A 208 ---AQAAENFLQSLAELARI-PNVKM--Q-VL--RENPIKSSKLPFASLHIFSLDP 254 (294)
T ss_dssp ---HHHHHHHHHHHHHHHTC-CSCEE--E-EE--SSCTTTSSSCCCCSEEEEECCS
T ss_pred ---HHHHHHHHHHHHHHhcC-CceEE--E-ec--CchHHHHhhCcCCCEEEEcCCC
Confidence 33446777777665422 22222 2 22 3344667775349999999876
No 42
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=68.84 E-value=9.8 Score=32.27 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=41.9
Q ss_pred chHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecC
Q 004372 513 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 572 (758)
Q Consensus 513 ~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdr 572 (758)
...+.|.++++|++++.||+|..++. ||.........+.+.+++-++ +.+| .++|-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 45678999999999999999987653 454333344577888888777 8998 56776
No 43
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=65.07 E-value=63 Score=33.62 Aligned_cols=131 Identities=10% Similarity=0.115 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHhHHHHHHHhcccccchhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 004372 247 AMFGAFVVGVLVPKEGPFANALVEKVEDLVSGIFLPLYFVSSGLKTNIATIQGL-QSWGLLALVILTACLGKIVGTFVVS 325 (758)
Q Consensus 247 ~~lgaf~aGL~l~~~~~~~~~l~~ki~~~~~~~~lPlfF~~~G~~~dl~~l~~~-~~~~~~~~ii~~~~~~K~~~~~~~~ 325 (758)
.++.+.++|...|..... ++... ...+.+-+...|++++..++... ..+.......+.-++...+.++..+
T Consensus 23 ~i~~~~~lg~~~P~~~~~-------~~~~i-~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~ 94 (332)
T 3zux_A 23 WAALFAAAAFFAPDTFKW-------AGPYI-PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLS 94 (332)
T ss_dssp HHHHHHHHHHHCGGGTGG-------GGGGH-HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcchhhhh-------hHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556788888852211 22222 45666778888999998877632 2343344444556666777778888
Q ss_pred HhcCCChHHHHHHHHH-HHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHHHHHHHHHHHHHHc
Q 004372 326 LSFKVPLREALALGIL-MNTKGLVELIVLNIGKDRKVLNDQVFAIMILMAVVTTFMTTPLVMAVY 389 (758)
Q Consensus 326 ~~~~~~~~~~~~lgl~-l~~kG~~~l~~~~~~~~~~~i~~~~~~~lv~~~lv~t~i~~plv~~l~ 389 (758)
+.++.+.....-+-+. ..|-|..+.++...+. | |.+.-..++....+.+.++.|+.-.++
T Consensus 95 ~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~--G--d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 95 KLLNLPAEIAVGVILVGCCPGGTASNVMTYLAR--G--NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTT--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHhcCCchhHHHHHHHHhC--C--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877765433322222 2334444444333222 1 222222222223333445566665554
No 44
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=63.81 E-value=14 Score=37.02 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=54.6
Q ss_pred CcChHHHHHHHHHHhhCCCe--EEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEE-EE----e
Q 004372 596 GRDDREALACGARMAEHPGI--SFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-RL----V 668 (758)
Q Consensus 596 G~ddreAL~~a~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e-~~----v 668 (758)
.|.|.+|++.|.|+++. +. +++++.+-+... ++.+.+.... .-+++...+ -- -
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~a-----------------~~~lr~ala~--GaD~vi~v~~d~~~~~~ 95 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQA-----------------AETLRTALAM--GADRAILVVAADDVQQD 95 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGGG-----------------HHHHHHHHHH--TCSEEEEEECCSSTTCC
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChhH-----------------HHHHHHHHhc--CCCEEEEEecChhhccc
Confidence 48899999999999987 55 899888764221 3334444332 334454444 11 1
Q ss_pred cChHHHHHHHHhc---cCCCEEEEccCC---C----chhccccccC
Q 004372 669 RNTAETIAVIREV---SRCNLLLVGRMP---D----GELALALSTR 704 (758)
Q Consensus 669 ~~~~e~~~~i~~~---~~~DL~iVGr~~---~----~~~~~gl~~w 704 (758)
.+...+..++.+. .+|||++.|++. + .|++..+-+|
T Consensus 96 ~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 96 IEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp CCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 2344555555444 239999999987 1 4555666666
No 45
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=61.45 E-value=13 Score=38.73 Aligned_cols=56 Identities=11% Similarity=-0.015 Sum_probs=40.6
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
.++++.|.||+|+--.|.++.+.....+..+.++++...-. ..-+.++++++.+++
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~-------------~~et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWK-------------FQEMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCC-------------CHHHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCC-------------CHHHHHHHHHHHHHc
Confidence 37899999999999999999988764455667777743221 122457888887765
No 46
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=61.40 E-value=14 Score=37.28 Aligned_cols=92 Identities=14% Similarity=0.111 Sum_probs=55.2
Q ss_pred ccCCcChHHHHHHHHHHhhCCCe--EEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEE-EE--
Q 004372 593 FFGGRDDREALACGARMAEHPGI--SFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEE-RL-- 667 (758)
Q Consensus 593 f~GG~ddreAL~~a~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e-~~-- 667 (758)
+.=.|.|.+||+.|.|+.+. +. +++++.+-+.. .++.+.+.... .-+++...+ --
T Consensus 36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------------a~~~lr~ala~--GaD~vi~v~~d~~~ 95 (255)
T 1efv_B 36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------------CQETIRTALAM--GADRGIHVEVPPAE 95 (255)
T ss_dssp EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------------HHHHHHHHHHH--TCSEEEEEECCHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------------HHHHHHHHHhc--CCCEEEEEecChhh
Confidence 33358899999999999987 55 89988886422 13334444322 334444443 11
Q ss_pred --ecChHHHHHHHHhc---cCCCEEEEccCC---C----chhccccccC
Q 004372 668 --VRNTAETIAVIREV---SRCNLLLVGRMP---D----GELALALSTR 704 (758)
Q Consensus 668 --v~~~~e~~~~i~~~---~~~DL~iVGr~~---~----~~~~~gl~~w 704 (758)
-.+...+..++.+. .+||+++.|++. + .|++..+-+|
T Consensus 96 ~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 96 AERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 12344444444443 239999999987 1 4556666666
No 47
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=58.19 E-value=18 Score=36.54 Aligned_cols=93 Identities=12% Similarity=0.034 Sum_probs=54.6
Q ss_pred ccCCcChHHHHHHHHHHhhCCCe--EEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEEe--
Q 004372 593 FFGGRDDREALACGARMAEHPGI--SFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERLV-- 668 (758)
Q Consensus 593 f~GG~ddreAL~~a~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~v-- 668 (758)
..=.|.|.+||+.|.|+++..+. +++++.+-+.. .++.+.+.... .-+++...+--.
T Consensus 33 ~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~-----------------~~~~lr~ala~--GaD~vi~v~d~~~~ 93 (264)
T 1o97_C 33 YDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR-----------------VDESLRKCLAK--GADRAVRVWDDAAE 93 (264)
T ss_dssp EEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG-----------------GHHHHHHHHHT--TCSEEEEECCGGGT
T ss_pred CccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh-----------------HHHHHHHHHhc--CCCEEEEEcCcccc
Confidence 33358899999999999976555 88888776422 13344444322 334444433111
Q ss_pred -cChHHHHHHHHhcc---CCCEEEEccCC---C----chhccccccC
Q 004372 669 -RNTAETIAVIREVS---RCNLLLVGRMP---D----GELALALSTR 704 (758)
Q Consensus 669 -~~~~e~~~~i~~~~---~~DL~iVGr~~---~----~~~~~gl~~w 704 (758)
.+...+..++.+.. +||+++.|++. + .|++..+-+|
T Consensus 94 ~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 94 GSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 13344444554432 39999999987 1 3455555555
No 48
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=45.19 E-value=28 Score=37.88 Aligned_cols=58 Identities=21% Similarity=0.153 Sum_probs=44.7
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhC-CCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 587 YTITVLFFGGRDDREALACGARMAEH-PGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~-~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
.+|+|.|.||+|.--+|.++.++.+. .+.++.++++...-. .+.+.|.+++.++..+.
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr-----------~~s~~~~~~v~~~~~~l 72 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS-----------ANADAWVTHCENVCQQW 72 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC-----------SSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC-----------cccHHHHHHHHHHHHHc
Confidence 58999999999999999999998877 889999999963211 11233567788887765
No 49
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=44.12 E-value=62 Score=33.33 Aligned_cols=90 Identities=19% Similarity=0.114 Sum_probs=51.5
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-h-----------------CCCeEEEEEEEeecccccCcccccCCcCccccHHHHH
Q 004372 587 YTITVLFFGGRDDREALACGARMA-E-----------------HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 648 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~ 648 (758)
.++++.|.||+|+--.|.++.+.- + .|...+.|+.+-+..... -=.+++
T Consensus 59 ~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~Fp-------------ET~ef~ 125 (308)
T 3fwk_A 59 GEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFK-------------TLENFI 125 (308)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCH-------------HHHHHH
T ss_pred CCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCH-------------HHHHHH
Confidence 379999999999999999997742 1 123466777765433221 124778
Q ss_pred HHHHhhcCCCCceEEEEEEec---ChHHHHHHHHhccC-CCEEEEccCC
Q 004372 649 SEFKLKTSRNGSVRYEERLVR---NTAETIAVIREVSR-CNLLLVGRMP 693 (758)
Q Consensus 649 ~e~~~~~~~~~~v~y~e~~v~---~~~e~~~~i~~~~~-~DL~iVGr~~ 693 (758)
+++.+++.- ++ ...... .-.+....+++... +|.++.|.|+
T Consensus 126 d~~~~~ygL--~L--~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR 170 (308)
T 3fwk_A 126 EETSLRYSL--SL--YESDRDKCETMAEAFETFLQVFPETKAIVIGIRH 170 (308)
T ss_dssp HHHHHHTTE--EE--EECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCT
T ss_pred HHHHHHhCC--cE--EEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeec
Confidence 888777621 11 110000 01223334455554 9999999998
No 50
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=43.77 E-value=69 Score=32.90 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=54.9
Q ss_pred eEEEEeccCCcChHHHHHHHHHHh-h-----------------CCCeEEEEEEEeecccccCcccccCCcCccccHHHHH
Q 004372 587 YTITVLFFGGRDDREALACGARMA-E-----------------HPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVL 648 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma-~-----------------~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~ 648 (758)
.++++-|.||+|+--.|.++.+.. + .++.++.++.+.+.. +..-..+++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~-------------~fpet~~fv 120 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEE-------------TFPTLENFV 120 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTT-------------CCHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCC-------------CCHHHHHHH
Confidence 379999999999999999988763 1 134567777775322 223356888
Q ss_pred HHHHhhcCCCCceEEEEEEe-----cChHHHHHHHHhccC-CCEEEEccCC
Q 004372 649 SEFKLKTSRNGSVRYEERLV-----RNTAETIAVIREVSR-CNLLLVGRMP 693 (758)
Q Consensus 649 ~e~~~~~~~~~~v~y~e~~v-----~~~~e~~~~i~~~~~-~DL~iVGr~~ 693 (758)
+++.+++. +....... ..-.+......+... .+-+++|.|+
T Consensus 121 ~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rr 167 (306)
T 2wsi_A 121 LETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRH 167 (306)
T ss_dssp HHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCC
T ss_pred HHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEec
Confidence 88887752 22211111 011222223333334 8899999998
No 51
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=41.79 E-value=32 Score=31.00 Aligned_cols=59 Identities=19% Similarity=0.105 Sum_probs=41.3
Q ss_pred chHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecCCC
Q 004372 513 DMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDRGL 574 (758)
Q Consensus 513 ~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdrg~ 574 (758)
.-.+.|.++++|++++.||+|...+. ||.........+.+.+++-++-+.+| .++|--+
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DERl 98 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEV-KLHDERL 98 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 44689999999999999999987643 45432223345677777766668888 5666533
No 52
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=41.18 E-value=26 Score=36.22 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=43.2
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeE-EEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGIS-FIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~-ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
.++++.+.||+|.--+|.++.+..+..+.+ +.++++...-. .+...|.+++.++..+.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----------~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----------ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----------THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----------cccHHHHHHHHHHHHHc
Confidence 589999999999999999999888777777 88888853211 11233567777777765
No 53
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=38.38 E-value=27 Score=38.37 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=45.8
Q ss_pred ceEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 586 SYTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 586 ~~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
..+|+|.+.||+|.--+|.++.++.+..+.++.++++...-.. .+.+.|.+++.++..++
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg----------~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG----------RESEEEMEFVKRFCVER 77 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT----------HHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc----------cccHHHHHHHHHHHHHc
Confidence 3589999999999999999999998888899999999633210 11234567888887765
No 54
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=37.81 E-value=21 Score=24.99 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=20.2
Q ss_pred cceEEEEeEEecCCCchHHHHHHHHHhcCcc
Q 004372 498 SRVSVRPMTAISSMSDMHEDICTTAESKRAA 528 (758)
Q Consensus 498 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~ad 528 (758)
..|+.| ..+.| +|.++|..+|+|+..|
T Consensus 10 kkvslh--llvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 10 KKVSLH--LLVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CCEEEE--EEECH--HHHHHHHHHHHHHSTT
T ss_pred ceeEEE--EeeCC--chhHHHHHHHHHccch
Confidence 345544 45664 9999999999999765
No 55
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.91 E-value=76 Score=31.98 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=27.8
Q ss_pred eEEEEeccCCc---ChHHHHHHHHHHhhCCCeEEEEEEEeec
Q 004372 587 YTITVLFFGGR---DDREALACGARMAEHPGISFIVIRFLLA 625 (758)
Q Consensus 587 ~~I~v~f~GG~---ddreAL~~a~rma~~~~v~ltvvr~~~~ 625 (758)
+||. +|.||+ |+.+...+|+++.++ +|.|+++.|-..
T Consensus 108 ~rII-lf~ds~~~~~~~~l~~lak~lkk~-gI~v~vIgFG~~ 147 (268)
T 4b4t_W 108 QRIV-AFVCSPISDSRDELIRLAKTLKKN-NVAVDIINFGEI 147 (268)
T ss_dssp EEEE-EEECSCCSSCHHHHHHHHHHHHHH-TEEEEEEEESSC
T ss_pred eEEE-EEECCCCCCCHHHHHHHHHHHHHc-CCEEEEEEeCCC
Confidence 4554 566655 567788888888887 999999999753
No 56
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=30.82 E-value=70 Score=29.11 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=41.1
Q ss_pred CCchHHHHHHHHHhcCccEEEecCCcccccCCcccccccchHHHHHHHhhcCCCceEEEecC
Q 004372 511 MSDMHEDICTTAESKRAAIIILPFHKHQRLDGSLETTRSDFRWVNQRVLKHAPCSVGILIDR 572 (758)
Q Consensus 511 ~~~m~~dI~~~A~e~~adlIIlp~h~~~~~dg~~~~~~~~~~~vn~~VL~~ApCsVgIlvdr 572 (758)
.....+.|.++.++++++.|++|...+ .+|.-.......+.+...+.++.+++|- ++|-
T Consensus 40 ~~~~~~~l~~li~~~~~~~ivVGlP~~--~nGt~~~~~~~ar~f~~~L~~~~~lpV~-~vDE 98 (150)
T 1vhx_A 40 GDYGLSRLSELIKDYTIDKIVLGFPKN--MNGTVGPRGEASQTFAKVLETTYNVPVV-LWDE 98 (150)
T ss_dssp TBCCHHHHHHHHTTSEEEEEEEECCCC--BTTBCCHHHHHHHHHHHHHHHHHCSCEE-EECC
T ss_pred hHHHHHHHHHHHHHcCCCEEEEeeeec--CCcchhHHHHHHHHHHHHHHHhhCCCEE-EecC
Confidence 456789999999999999999997643 2443211112246777777777789984 5665
No 57
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=28.90 E-value=50 Score=33.04 Aligned_cols=54 Identities=7% Similarity=-0.117 Sum_probs=39.8
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
++++.|.||+|+--.|.++.+.... +.++.++++..... ..-+.++++++.+++
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg~~-------------~~et~~~v~~~~~~~ 96 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTLHH-------------FPQTLTLKNEIEKKY 96 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCSCB-------------CHHHHHHHHHHHHHH
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCCCC-------------CHHHHHHHHHHHHHh
Confidence 7999999999999999999998765 55667777643221 122467888887776
No 58
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=28.34 E-value=82 Score=28.80 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.9
Q ss_pred EeEEecCCCchHHHHHHHHHhcCccEEEecCCccc
Q 004372 504 PMTAISSMSDMHEDICTTAESKRAAIIILPFHKHQ 538 (758)
Q Consensus 504 ~~~~vs~~~~m~~dI~~~A~e~~adlIIlp~h~~~ 538 (758)
-...+-|...|+..|.++|++.++|+||-|.....
T Consensus 92 LIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~ 126 (153)
T 2k4m_A 92 LIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGED 126 (153)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBC
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 34455688999999999999999999999997654
No 59
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=26.88 E-value=69 Score=30.72 Aligned_cols=52 Identities=13% Similarity=-0.072 Sum_probs=36.8
Q ss_pred eEEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhc
Q 004372 587 YTITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKT 655 (758)
Q Consensus 587 ~~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~ 655 (758)
.+|+|.|.||+|.--.|.++.+.. + ++.++++...-. ..-+.++++++.+++
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g~~-------------~~e~~~~v~~~~~~~ 96 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTGYL-------------FPETYRFIDELTDKL 96 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECSCB-------------CHHHHHHHHHHHHHT
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCCCC-------------CHHHHHHHHHHHHHh
Confidence 389999999999999999998885 2 356676653221 122457778877765
No 60
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=26.44 E-value=18 Score=24.08 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhccHHHHHHHHHhccc
Q 004372 159 FLVFMGVALSITAFPVLARILAELKL 184 (758)
Q Consensus 159 ~~l~l~~~ls~Ts~~vv~~iL~elkl 184 (758)
.++.+|+++|.|++..+..++++++.
T Consensus 5 ~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 5 DNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCCChHHHHHHHHHcCC
Confidence 46788999999999999999998874
No 61
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=25.67 E-value=1.7e+02 Score=24.81 Aligned_cols=80 Identities=21% Similarity=0.258 Sum_probs=52.7
Q ss_pred EEEEeccCCcChHHHHHHHHHHhhCCCeEEEEEEEeecccccCcccccCCcCccccHHHHHHHHHhhcCCCCceEEEEEE
Q 004372 588 TITVLFFGGRDDREALACGARMAEHPGISFIVIRFLLAADAIGNTVSVDMAGNASMDEEVLSEFKLKTSRNGSVRYEERL 667 (758)
Q Consensus 588 ~I~v~f~GG~ddreAL~~a~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~~~~~~~~~~v~y~e~~ 667 (758)
.|.++| ..|.|.|.-..|=.++.++++.++.--.+ .+.-.+-++||...-+ . -+.
T Consensus 3 qifvvf---ssdpeilkeivreikrqgvrvvllysdqd---------------ekrrrerleefekqgv-----d--vrt 57 (162)
T 2l82_A 3 QIFVVF---SSDPEILKEIVREIKRQGVRVVLLYSDQD---------------EKRRRERLEEFEKQGV-----D--VRT 57 (162)
T ss_dssp EEEEEE---ESCHHHHHHHHHHHHHTTCEEEEEECCSC---------------HHHHHHHHHHHHTTTC-----E--EEE
T ss_pred eEEEEe---cCCHHHHHHHHHHHHhCCeEEEEEecCch---------------HHHHHHHHHHHHHcCC-----c--eee
Confidence 678888 56788888888888888999877653211 1223466778876432 2 346
Q ss_pred ecChHHHHHHHHhccC----CCEEEEccC
Q 004372 668 VRNTAETIAVIREVSR----CNLLLVGRM 692 (758)
Q Consensus 668 v~~~~e~~~~i~~~~~----~DL~iVGr~ 692 (758)
|++-++.-+-||++-+ .|.+++-.+
T Consensus 58 vedkedfrenireiwerypqldvvvivtt 86 (162)
T 2l82_A 58 VEDKEDFRENIREIWERYPQLDVVVIVTT 86 (162)
T ss_dssp CCSHHHHHHHHHHHHHHCTTCCEEEEEEC
T ss_pred eccHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 7888888888887633 466555444
No 62
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=22.95 E-value=1.2 Score=29.89 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=23.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHhcCCC
Q 004372 234 LAAGFITDAIGIHAMFGAFVVGVLVPKE 261 (758)
Q Consensus 234 l~~~~la~~~g~~~~lgaf~aGL~l~~~ 261 (758)
+.+++++|.+++|++++.+.+|+.+.+.
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 3466789999999999999999998753
Done!