BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004374
         (758 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P56372|SELA_DESBA L-seryl-tRNA(Sec) selenium transferase OS=Desulfovibrio baculatus
           GN=selA PE=3 SV=1
          Length = 465

 Score = 39.3 bits (90), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 24/143 (16%)

Query: 546 NEDLAVEAGQLEQVYRHLPKIFSRYTSAEGFLFLQDDTILNYWNLLQADKNKLWITDKVS 605
           N ++ ++ GQ    Y H+ K+  R T AE  L + ++               L + D ++
Sbjct: 116 NLEMDLDTGQRGSRYSHVEKLLCRLTGAEAGLVVNNNA-----------AAVLLVLDTLA 164

Query: 606 KSWSTVSPNGK----------SDWYSKQAEMVKEVVSTMPVHFQVNYKEAIRSDQSLI-- 653
           K    V   G+           +   K   +++EV +T   H + +Y EAI  D +++  
Sbjct: 165 KGREVVVSRGQLVEIGGSFRIPEVMKKSGAVLREVGATNRTHLR-DYAEAIGPDTAMLMK 223

Query: 654 ICSSELFYIPQHLAADFVDLVNL 676
           + +S    I  H   D  DLV L
Sbjct: 224 VHTSNYRIIGFHKEVDLPDLVAL 246


>sp|Q5QWQ7|HIS5_IDILO Imidazole glycerol phosphate synthase subunit HisH OS=Idiomarina
           loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR)
           GN=hisH PE=3 SV=1
          Length = 196

 Score = 35.4 bits (80), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 63  DTASLIQSKSQEHSPNAIPLPVINWNSIQPIADK-----SSVYSRFRSEKWIVVSVDRYP 117
           D  +LI +K++    + +PLP + WN++QP AD      S  Y  F       V+VD Y 
Sbjct: 93  DCLNLIPAKTKRLRDSGLPLPHMGWNTLQPTADNPLVDTSDSYCYFVHS--FAVAVDEYT 150

Query: 118 TDS 120
             S
Sbjct: 151 IAS 153


>sp|Q8RDD1|SYM_THETN Methionine--tRNA ligase OS=Thermoanaerobacter tengcongensis (strain
           DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=metG PE=3
           SV=1
          Length = 638

 Score = 34.3 bits (77), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 410 KHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR---------LMSLEL 460
           KH  +  +  LS+ +   G+ TE D KF   W  D+  VG +  R         LM+L L
Sbjct: 219 KHVIYVWIDALSNYITALGYMTENDEKFKKYWPADVHLVGKEIVRFHTIIWPAMLMALGL 278

Query: 461 DRPRASIGHG 470
             P+   GHG
Sbjct: 279 PLPKKVFGHG 288


>sp|Q8YAF2|SYM_LISMO Methionine--tRNA ligase OS=Listeria monocytogenes serovar 1/2a
           (strain ATCC BAA-679 / EGD-e) GN=metG PE=3 SV=1
          Length = 664

 Score = 33.9 bits (76), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 410 KHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR---------LMSLEL 460
           KH  +  +  LS+ +   G+ T+ D KF   W  D+  VG +  R         LM+L+L
Sbjct: 233 KHVVYVWIDALSNYITALGYNTDNDTKFQKYWPADVQIVGKEIVRFHTIYWPIMLMALDL 292

Query: 461 DRPRASIGHG 470
             P+   GHG
Sbjct: 293 PLPKMVFGHG 302


>sp|Q724N6|SYM_LISMF Methionine--tRNA ligase OS=Listeria monocytogenes serotype 4b
           (strain F2365) GN=metG PE=3 SV=1
          Length = 665

 Score = 33.9 bits (76), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 410 KHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR---------LMSLEL 460
           KH  +  +  LS+ +   G+ T+ D KF   W  D+  VG +  R         LM+L+L
Sbjct: 234 KHVVYVWIDALSNYITALGYNTDNDTKFQKYWPADVQIVGKEIVRFHTIYWPIMLMALDL 293

Query: 461 DRPRASIGHG 470
             P+   GHG
Sbjct: 294 PLPKMVFGHG 303


>sp|Q92F90|SYM_LISIN Methionine--tRNA ligase OS=Listeria innocua serovar 6a (strain CLIP
           11262) GN=metG PE=3 SV=1
          Length = 664

 Score = 33.9 bits (76), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)

Query: 410 KHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR---------LMSLEL 460
           KH  +  +  LS+ +   G+ T+ D KF   W  D+  VG +  R         LM+L+L
Sbjct: 233 KHVVYVWIDALSNYITALGYNTDNDTKFQKYWPADVQIVGKEIVRFHTIYWPIMLMALDL 292

Query: 461 DRPRASIGHG 470
             P+   GHG
Sbjct: 293 PLPKMVFGHG 302


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,399,809
Number of Sequences: 539616
Number of extensions: 12214500
Number of successful extensions: 25468
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 25464
Number of HSP's gapped (non-prelim): 11
length of query: 758
length of database: 191,569,459
effective HSP length: 125
effective length of query: 633
effective length of database: 124,117,459
effective search space: 78566351547
effective search space used: 78566351547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)