Query 004374
Match_columns 758
No_of_seqs 93 out of 103
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 22:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03385 DUF288: Protein of un 100.0 3E-81 6.5E-86 662.5 20.5 276 347-634 1-344 (390)
2 PLN03180 reversibly glycosylat 100.0 3E-44 6.6E-49 379.6 19.3 312 101-449 7-343 (346)
3 PF03214 RGP: Reversibly glyco 100.0 1.8E-42 3.9E-47 365.4 19.5 318 103-449 6-344 (348)
4 cd03569 VHS_Hrs_Vps27p VHS dom 60.9 19 0.00042 35.2 5.8 68 385-455 75-142 (142)
5 cd02526 GT2_RfbF_like RfbF is 60.3 19 0.00042 35.8 5.9 85 110-202 2-90 (237)
6 cd04185 GT_2_like_b Subfamily 51.6 29 0.00064 33.7 5.4 87 109-202 1-94 (202)
7 cd03565 VHS_Tom1 VHS domain fa 44.4 51 0.0011 32.3 5.8 68 385-453 73-141 (141)
8 cd04192 GT_2_like_e Subfamily 43.5 54 0.0012 32.1 5.9 88 109-203 1-98 (229)
9 cd04186 GT_2_like_c Subfamily 36.4 73 0.0016 29.2 5.3 81 109-202 1-89 (166)
10 cd06435 CESA_NdvC_like NdvC_li 36.0 1.8E+02 0.004 28.9 8.4 88 109-202 2-99 (236)
11 cd06421 CESA_CelA_like CESA_Ce 35.2 1.6E+02 0.0035 29.0 7.8 82 107-202 3-99 (234)
12 PTZ00260 dolichyl-phosphate be 32.8 1.5E+02 0.0032 32.7 7.7 39 104-143 69-121 (333)
13 cd06423 CESA_like CESA_like is 30.5 1.2E+02 0.0025 27.4 5.5 83 109-202 1-93 (180)
14 cd04195 GT2_AmsE_like GT2_AmsE 26.3 1.3E+02 0.0029 28.9 5.5 86 109-203 2-96 (201)
15 cd06420 GT2_Chondriotin_Pol_N 24.8 1.8E+02 0.004 27.4 6.0 84 109-202 1-94 (182)
16 cd06434 GT2_HAS Hyaluronan syn 24.7 1.4E+02 0.0031 29.5 5.4 85 108-204 3-94 (235)
17 TIGR03469 HonB hopene-associat 24.2 2.9E+02 0.0063 30.8 8.3 90 105-202 40-148 (384)
18 cd03568 VHS_STAM VHS domain fa 23.1 1.7E+02 0.0036 28.9 5.4 66 385-453 71-136 (144)
19 cd00761 Glyco_tranf_GTA_type G 21.7 4.4E+02 0.0094 22.9 7.4 87 109-203 1-93 (156)
20 cd02522 GT_2_like_a GT_2_like_ 21.0 2E+02 0.0043 28.2 5.5 77 109-202 3-87 (221)
21 PRK10018 putative glycosyl tra 20.5 2E+02 0.0044 31.0 5.9 86 106-203 6-101 (279)
No 1
>PF03385 DUF288: Protein of unknown function, DUF288; InterPro: IPR005049 This is a protein family of unknown function.
Probab=100.00 E-value=3e-81 Score=662.55 Aligned_cols=276 Identities=35% Similarity=0.604 Sum_probs=242.9
Q ss_pred cchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecCCCCC--CCchhhhHHHhhhHHHHHhccccCCcc---cHHHHHHHHH
Q 004374 347 MASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDKIEAY--PFSEEKDLHVNVGRLIKFLVSWRSNKH---RFFEKVLELS 421 (758)
Q Consensus 347 R~tDIWRgY~~QrlLw~~G~~v~F~pP~v~q~RN~H~~--Df~~E~~ly~~sg~lv~fL~~W~~~~~---~l~e~i~~L~ 421 (758)
||||||||||+|||||++|++|+|+||+|+|+||+|+| ||++|+|||+++|+||+||++|+|+.+ +|++||++|+
T Consensus 1 RvTDIWRSY~aQRLLW~~G~~VsF~PpnV~Q~RNaHdYLkDF~DEk~LY~~sG~LV~FL~~W~~~~~n~~~L~~~Il~L~ 80 (390)
T PF03385_consen 1 RVTDIWRSYWAQRLLWLSGGTVSFVPPNVVQFRNAHDYLKDFKDEKDLYEDSGRLVEFLHEWRCSKGNSSTLFECILDLY 80 (390)
T ss_pred CchhHHHHHHHHHHHHHcCCeEEEcCCceeecccccccccchHHHHHHHHhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Confidence 89999999999999999999999999999999999999 999999999999999999999999754 6999999999
Q ss_pred HHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCccccccccCCC-CCCCCCCCC--------cc---cCCCCCcccccccc
Q 004374 422 HSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLMSLELDRPR-ASIGHGDRK--------EF---VPRKLPSVHLGVEE 489 (758)
Q Consensus 422 ~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~~~~~~~~~-~~~~~~~~~--------~f---~p~~~~~~~~~~~~ 489 (758)
++|+|+|||+++||+||+|||+||++|||+||+|++.++++|| +|.+|++|. || +|++.. .+++++
T Consensus 81 ~~m~e~GfW~~~Dv~L~~AWL~DL~sVGY~fP~L~~~~~~dpYs~s~net~R~vNCRRm~leF~lvdp~~~~--~~~~~r 158 (390)
T PF03385_consen 81 VAMAEEGFWGEEDVKLMQAWLQDLKSVGYKFPRLRSEEYRDPYSPSTNETSRDVNCRRMHLEFELVDPKKEE--SQNIKR 158 (390)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHhhchhhhhcccCCCCCCCCCccccccccccccceeeccCCcccc--cHHHHH
Confidence 9999999999999999999999999999999999999999999 666666674 56 666643 678999
Q ss_pred ccchhhcccchhhhhcccC----------------------------CEEEEEEcCccccccHHHHHHHhhccCCEEEEe
Q 004374 490 TGTVSYEIGNLIRWRKNFG----------------------------NVVLIMFCSGPVERTALEWRLLYGRIFKTVIIL 541 (758)
Q Consensus 490 ~~~~~~~~g~~~~wr~~~~----------------------------nvVLIv~~n~p~~~~~~~~r~lY~p~F~~VVf~ 541 (758)
|.||++||||+++||+++| |+||||+|||||+++|+++||||||||++||||
T Consensus 159 a~qKlnyFGDl~~WC~etg~s~~~~~fpsp~QL~~~h~~~~vl~~~~~svlivvnn~pw~ygmgliqrlYqpyFa~viFC 238 (390)
T PF03385_consen 159 AEQKLNYFGDLVDWCNETGYSNLSKYFPSPEQLAEQHDESYVLQKNLNSVLIVVNNYPWKYGMGLIQRLYQPYFAMVIFC 238 (390)
T ss_pred HHHHHHhhchHHHHHhccCCccccccCCCHHHHHHHhhcceeecccCceeEEEecCCchhhhHHHHHHHhcccccEEEec
Confidence 9999999999999999998 799999999999999999999999999999999
Q ss_pred eC--------CCCCCc-----------ccccccchhhhhhHHHHHh-hcCCCceEEEeecceeecccccccCCCCccccc
Q 004374 542 SE--------QKNEDL-----------AVEAGQLEQVYRHLPKIFS-RYTSAEGFLFLQDDTILNYWNLLQADKNKLWIT 601 (758)
Q Consensus 542 g~--------~~n~~~-----------~ve~~~g~~~Y~~L~k~~~-~~p~~~GYl~~~DD~ifN~Wn~~~~dk~kiW~~ 601 (758)
|+ .+|.++ .+|+++|+++||||.++-+ +++|++|||+|+||+|||+||++++++ +...
T Consensus 239 G~~yp~~~~~~dn~t~~~~pinyih~~~~e~~~g~~~y~c~~~v~em~~~nv~gy~~~~dd~ifn~w~~id~s~--v~h~ 316 (390)
T PF03385_consen 239 GSWYPDQFSDQDNYTSTIHPINYIHMNPAEIHRGYFAYHCLTLVKEMGLQNVEGYFLMADDAIFNIWQRIDYSR--VHHL 316 (390)
T ss_pred CCcCchhhcCCccCccccCCcceeecCHHHHhcchhhHHHHHHHHHhcCCCcceEEEecchhHhhhhhhcchhh--hhee
Confidence 95 344443 2788999999999765544 999999999999999999999999986 3333
Q ss_pred cccccceeecCCCCCcccch-hH--HHHHHHHHhcC
Q 004374 602 DKVSKSWSTVSPNGKSDWYS-KQ--AEMVKEVVSTM 634 (758)
Q Consensus 602 ~~v~~sw~t~~~~gg~dW~~-k~--~~~vkkav~~~ 634 (758)
++ ...+...||. ++ -.++++++..+
T Consensus 317 ~g--------~~~~~~~ww~~~~~G~~Aa~~iv~~i 344 (390)
T PF03385_consen 317 TG--------SYENSNPWWPNKDYGIPAAKRIVETI 344 (390)
T ss_pred cc--------CCCCCCCcccccccchHHHHHHHHHh
Confidence 22 2455445544 43 27888877665
No 2
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=100.00 E-value=3e-44 Score=379.63 Aligned_cols=312 Identities=15% Similarity=0.194 Sum_probs=252.9
Q ss_pred cccCCCeEEEEEeccCChHHHHhhhc-cCCeE--EEEEeCCCCCCCCCCC--CceeecHHHHhhcCCccccccCCCCccc
Q 004374 101 SRFRSEKWIVVSVDRYPTDSLKKLVK-IKGWQ--VLAIGNSRTPKNWNLK--GAIFLSLDMQANLGFRVLDFLPYDSYVR 175 (758)
Q Consensus 101 ~~~~~~~wIVvTtI~~Pt~~v~~la~-~~~w~--lvVVgD~kTP~dw~l~--~v~fLs~e~Q~~L~f~~~~~LP~~SyaR 175 (758)
....++..||||||+++ ++++.... +.+.. +|+.+|.++|.- ... +.++.+.++|..+==....+|||+|++|
T Consensus 7 ~~~~~evdIVi~TI~~~-~fL~~~r~~l~~~h~iiV~d~D~~~~~~-~~~G~d~~vy~r~d~~~~Lg~~~~~Ip~~~~a~ 84 (346)
T PLN03180 7 PLLKDELDIVIPTIRNL-DFLEMWRPFFQPYHLIIVQDGDPSKEIK-VPEGFDYELYNRNDINRILGPKASCISFKDSAC 84 (346)
T ss_pred CCCCCcceEEEeccCch-hHHHHHHHhcCcccEEEEecCCccccee-ccCCCceeecCHHHHHhhhcccccccccCcccc
Confidence 35678899999999996 88888875 45554 445556666643 233 4578899999755112377899999999
Q ss_pred hhHHHHHHHHcCCeEEEeecCCCCccCCC------CCCccceeccccccccceeeeecccCCCCceecc-CccCCCCCcc
Q 004374 176 KSCGYLFAIQHGAKKIFDADDRGDVIGDD------LGKHFDVELVGEGARQETILQYSHENPNRTIVNP-YVHFGQRSVW 248 (758)
Q Consensus 176 KNiGYLyAI~~GAe~IydtDDDN~p~~~~------l~~~Fd~~~~~~~~r~~~~~q~~~~~~~~~~~Np-Y~~fg~~~vW 248 (758)
||+|||++ ++++||.+||||.|.++. +..+|-. ++. +-....|||. |.-|....++
T Consensus 85 R~fGyL~s---~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~----------NL~----~pstp~~fNtLYdp~r~g~~f 147 (346)
T PLN03180 85 RCFGYLVS---KKKYIFTIDDDCFVAKDPSGKLINALEQHIK----------NLL----SPSTPFFFNTLYDPYREGADF 147 (346)
T ss_pred hhhhheee---cceEEEEECCCCCCCCCCccccccHHHHHHH----------hcC----CCCCCceeecccccCccCCcc
Confidence 99999999 599999999999999872 2222211 111 1123459994 4445567899
Q ss_pred CCCCCCCCccCCCccceeeeeeCchhhhhhhhhcCCCCcchhhhcccCCCCCCcccccCCCCCccccCCCceeecccccc
Q 004374 249 PRGLPLENVGEISHEEFYTEVFGGKQFIQQGISNGLPDVDSVFYFTRKPSLEAFDIRFDDRVPKVALPQGMMVPVNSFNT 328 (758)
Q Consensus 249 PRGfPle~i~~~~~~~~~~~v~~~~~~IQQGL~~~dPDVDAIyRLt~~~~~~~l~v~F~~~ap~vaL~~GT~aP~NSQNT 328 (758)
|||||++.++. ..++|.||||.++||+||+++|..+++++ -+|.. .-+++|.|||+|+|||||
T Consensus 148 vRGYPfS~R~g------------v~vaiS~GLWln~PD~DA~t~l~k~~e~~---t~yvd--avvtip~gt~~pv~~~Nl 210 (346)
T PLN03180 148 VRGYPFSLREG------------VPTAVSHGLWLNIPDYDAPTQLVKPLERN---TRYVD--AVMTIPKGTLFPMCGMNL 210 (346)
T ss_pred cCCCCccccCC------------cceEEecccccCCCcccchhhhccchhcc---ceecc--cEEeccCCCEeecccchh
Confidence 99999999963 14678899999999999999999987765 34543 367799999999999999
Q ss_pred cccccch-hheec-ccc---ccccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecCCCCC--CCchhhhHHHhhhHHHH
Q 004374 329 IYQSSAF-WALML-PVS---VSTMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDKIEAY--PFSEEKDLHVNVGRLIK 401 (758)
Q Consensus 329 lfh~~AF-w~L~L-P~t---vs~R~tDIWRgY~~QrlLw~~G~~v~F~pP~v~q~RN~H~~--Df~~E~~ly~~sg~lv~ 401 (758)
+|+|+++ |+||. ||. ..+|+.|||.|+++|+|...+|+.|.+|-|.|.|.| +|+. |++.|..+....+.+++
T Consensus 211 AF~ReligPA~y~g~m~~g~~i~R~dDiWsG~c~K~i~dhLG~gVktG~Pyv~h~k-~~n~~~dL~~E~~Gi~l~E~i~~ 289 (346)
T PLN03180 211 AFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCAKVICDHLGLGVKTGLPYIWHSK-ASNPFVNLKKEYKGIFWQEEIIP 289 (346)
T ss_pred hhhhhhcchhheecccCCCCcccchhhhHHHHHHHHHHHHhCcceecCCceEecCC-cccHHHHHHhhccCeechHHHHH
Confidence 9999999 99885 776 599999999999999999999999999999999999 9997 99999999999999999
Q ss_pred Hhcccc--CCcccHHHHHHHHHHHHHHc--CC--cchhhHHHHHHHHHHHHhcC
Q 004374 402 FLVSWR--SNKHRFFEKVLELSHSMAEE--GF--WTERDVKFTAAWLQDLIAVG 449 (758)
Q Consensus 402 fL~~W~--~~~~~l~e~i~~L~~~m~e~--gf--w~~~Dv~l~~aWL~DL~~vG 449 (758)
|+++-+ .++.++.+|+++|+..+.+. .+ .-.+-++.|..|++-++++|
T Consensus 290 ff~~~~l~~~a~t~~~cy~ela~~vk~~l~~~d~~f~~~a~~M~~Wi~~w~~l~ 343 (346)
T PLN03180 290 FFQSVRLPKEAVTVEDCYIELAKQVKEKLGKVDPYFTKLADAMVTWIEAWKELN 343 (346)
T ss_pred HHHhccCCcccCcHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 999998 46778999999999988886 33 33366889999999999987
No 3
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=100.00 E-value=1.8e-42 Score=365.36 Aligned_cols=318 Identities=18% Similarity=0.259 Sum_probs=248.4
Q ss_pred cCCCeEEEEEecc-CChHHHHhhhc-cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhc--CCccccccCCCCccchhH
Q 004374 103 FRSEKWIVVSVDR-YPTDSLKKLVK-IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANL--GFRVLDFLPYDSYVRKSC 178 (758)
Q Consensus 103 ~~~~~wIVvTtI~-~Pt~~v~~la~-~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L--~f~~~~~LP~~SyaRKNi 178 (758)
...+--||+.+|. +=|+++..-.. +.+.+|+||-|..-+..-..|.--=+.+..|..+ ..+...++||++++|||+
T Consensus 6 ~~~~~divi~~~~~~l~~~~~~wr~~~~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~a~R~f 85 (348)
T PF03214_consen 6 LDDEVDIVIPALRPNLTDFLEEWRPFFSPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGDACRNF 85 (348)
T ss_pred ccCcccEEeecccccHHHHHHHHHHhhcceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCcccccccccchhhh
Confidence 4567889999999 55688887776 6899999999977666555542222233334433 334458999999999999
Q ss_pred HHHHHHHcCCeEEEeecCCCCccCCCCCCccceeccccccccceeeeecccCCCCceec-cCccCCCCCccCCCCCCCCc
Q 004374 179 GYLFAIQHGAKKIFDADDRGDVIGDDLGKHFDVELVGEGARQETILQYSHENPNRTIVN-PYVHFGQRSVWPRGLPLENV 257 (758)
Q Consensus 179 GYLyAI~~GAe~IydtDDDN~p~~~~l~~~Fd~~~~~~~~r~~~~~q~~~~~~~~~~~N-pY~~fg~~~vWPRGfPle~i 257 (758)
|||.|- .++||.+||||.|.+++++.+++.... .. .+.. +-....||| -|..+.....+|||||++.+
T Consensus 86 GyL~s~---~~yivsiDDD~~P~~D~~g~~~~~v~q---h~-~~~~----~~st~~~fNtLyd~~~e~~~f~RGyPfS~R 154 (348)
T PF03214_consen 86 GYLVSK---KDYIVSIDDDCLPAKDDFGTHIDAVAQ---HV-ENLS----TPSTPFFFNTLYDPYREGADFPRGYPFSLR 154 (348)
T ss_pred Hhhhcc---cceEEEEccccccccCCccceehhhhc---cc-eeee----ccCchhhhhhhcccccccCcccCCCCcccc
Confidence 999884 499999999999999888777765411 11 1111 123445899 56677777899999999976
Q ss_pred cCCCccceeeeeeCchhhhhhhhhcCCCCcchhhhcccCCCCCCcccccCCCCCccccCCCceeecccccccccccchh-
Q 004374 258 GEISHEEFYTEVFGGKQFIQQGISNGLPDVDSVFYFTRKPSLEAFDIRFDDRVPKVALPQGMMVPVNSFNTIYQSSAFW- 336 (758)
Q Consensus 258 ~~~~~~~~~~~v~~~~~~IQQGL~~~dPDVDAIyRLt~~~~~~~l~v~F~~~ap~vaL~~GT~aP~NSQNTlfh~~AFw- 336 (758)
+.. .++|.||||.++|||||+++|..+.+.. -+|.. +-+++|.|||+|+|||||+|+|++++
T Consensus 155 egv------------~~~~s~GLWln~PD~DA~t~l~~~~~r~---~~~~d--~~~~~p~gt~~pv~s~NlAf~Relip~ 217 (348)
T PF03214_consen 155 EGV------------DTAASAGLWLNVPDLDAPTQLVKPTERN---TRYVD--AVLTIPRGTYLPVCSMNLAFDRELIPP 217 (348)
T ss_pred cCC------------ceeeecccccCCcccchhhhhccchhcc---ccccC--ceEEecCCCEeecccchhhhhhhhcCh
Confidence 421 3468899999999999999998766543 34543 56789999999999999999999997
Q ss_pred heecccc-------ccccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecCCCCC-CCchhhhHHHhhhHHHHHhccccC
Q 004374 337 ALMLPVS-------VSTMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDKIEAY-PFSEEKDLHVNVGRLIKFLVSWRS 408 (758)
Q Consensus 337 ~L~LP~t-------vs~R~tDIWRgY~~QrlLw~~G~~v~F~pP~v~q~RN~H~~-Df~~E~~ly~~sg~lv~fL~~W~~ 408 (758)
.|++|+. .-.|+.|||.||++|+|...+|+.|.+|-|.|+|.++.+.+ |++.|.++.+.++.|++|+++-+-
T Consensus 218 ~~~~~~~~~~~~~~R~d~~gDIWsG~f~k~~~d~Lg~~V~~G~P~v~H~~a~~~~~dL~~E~~Gi~l~E~i~~f~q~v~L 297 (348)
T PF03214_consen 218 AYYFPMMGNGWGIGRFDRFGDIWSGYFLKVICDHLGHGVKTGLPYVWHNKAHNAFDDLKKEVPGIELNEDILPFFQSVKL 297 (348)
T ss_pred heecccccCCCcccccccchhHHHHHHHHHHHHHcCCccccCCceEEecCCCchHHHHHhhccchhhHHHHHHHHhccCC
Confidence 5667753 23455599999999999999999999999999999654334 999999999999999999999987
Q ss_pred Ccc--cHHHHHHHHHHHHHHcCCcch-----hhHHHHHHHHHHHHhcC
Q 004374 409 NKH--RFFEKVLELSHSMAEEGFWTE-----RDVKFTAAWLQDLIAVG 449 (758)
Q Consensus 409 ~~~--~l~e~i~~L~~~m~e~gfw~~-----~Dv~l~~aWL~DL~~vG 449 (758)
++. ++.+|+++|+.+.. +++... +-++.|++|++.++++|
T Consensus 298 s~~A~t~~dcy~ELA~~Vk-ekLg~~dp~F~kvAdaMv~WI~AW~~ln 344 (348)
T PF03214_consen 298 SKTAVTVEDCYRELAKQVK-EKLGSVDPYFTKVADAMVAWIKAWKELN 344 (348)
T ss_pred CcccccHHHHHHHHHHHHH-HhccCcChHHHHHHHHHHHHHHHHHHhC
Confidence 665 68999999998554 445332 66899999999999998
No 4
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=60.90 E-value=19 Score=35.21 Aligned_cols=68 Identities=24% Similarity=0.309 Sum_probs=50.9
Q ss_pred CCchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCcc
Q 004374 385 PFSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRL 455 (758)
Q Consensus 385 Df~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l 455 (758)
.|..|+---+-.++|++.+.. ......-+++++|....++ .|-+..++..+..=-+-|++-||+||.+
T Consensus 75 ~fh~evas~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~~FP~~ 142 (142)
T cd03569 75 HFHDEVASREFMDELKDLIKT--TKNEEVRQKILELIQAWAL-AFRNKPQLKYVVDTYQILKAEGHKFPEL 142 (142)
T ss_pred HHHHHHhhHHHHHHHHHHHcc--cCCHHHHHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHcCCCCCCC
Confidence 366666666666777777765 2334577888888888774 6666678888888899999999999964
No 5
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=60.32 E-value=19 Score=35.77 Aligned_cols=85 Identities=15% Similarity=0.038 Sum_probs=47.3
Q ss_pred EEEeccCChHHHHhh-hcc--CCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccc-hhHHHHHHHH
Q 004374 110 VVSVDRYPTDSLKKL-VKI--KGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVR-KSCGYLFAIQ 185 (758)
Q Consensus 110 VvTtI~~Pt~~v~~l-a~~--~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~SyaR-KNiGYLyAI~ 185 (758)
|+++-+..-+.+.+. .++ ..+.+|||-|..++..-. ..++...+..+...-.-..+++ .|.|.-.|-.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~~~~~~--------~~~~~~~~i~~i~~~~n~G~~~a~N~g~~~a~~ 73 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQVDKVVVVDNSSGNDIEL--------RLRLNSEKIELIHLGENLGIAKALNIGIKAALE 73 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhccCCEEEEEeCCCCccHHH--------HhhccCCcEEEEECCCceehHHhhhHHHHHHHh
Confidence 455566652333333 232 268999998865543200 0111112222222211122333 7888888877
Q ss_pred cCCeEEEeecCCCCccC
Q 004374 186 HGAKKIFDADDRGDVIG 202 (758)
Q Consensus 186 ~GAe~IydtDDDN~p~~ 202 (758)
+|+++|+-+|+|..+..
T Consensus 74 ~~~d~v~~lD~D~~~~~ 90 (237)
T cd02526 74 NGADYVLLFDQDSVPPP 90 (237)
T ss_pred CCCCEEEEECCCCCcCH
Confidence 78999999999999754
No 6
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.61 E-value=29 Score=33.72 Aligned_cols=87 Identities=18% Similarity=0.024 Sum_probs=48.7
Q ss_pred EEEEeccCChHHHHhh----hc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCcc-chhHHHH
Q 004374 109 IVVSVDRYPTDSLKKL----VK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYV-RKSCGYL 181 (758)
Q Consensus 109 IVvTtI~~Pt~~v~~l----a~--~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~Sya-RKNiGYL 181 (758)
||++|-+.+ +.++++ .+ .+.+.++||-|..|+.... .+. +.++..++.+...-.-..++ ..|.|.-
T Consensus 1 viI~~~n~~-~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~-----~~~-~~~~~~~i~~~~~~~n~g~~~~~n~~~~ 73 (202)
T cd04185 1 AVVVTYNRL-DLLKECLDALLAQTRPPDHIIVIDNASTDGTAE-----WLT-SLGDLDNIVYLRLPENLGGAGGFYEGVR 73 (202)
T ss_pred CEEEeeCCH-HHHHHHHHHHHhccCCCceEEEEECCCCcchHH-----HHH-HhcCCCceEEEECccccchhhHHHHHHH
Confidence 466666666 444443 22 3468899888876653211 000 11111122222222222233 3788888
Q ss_pred HHHHcCCeEEEeecCCCCccC
Q 004374 182 FAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 182 yAI~~GAe~IydtDDDN~p~~ 202 (758)
.|++.++++|+-+|||..+..
T Consensus 74 ~a~~~~~d~v~~ld~D~~~~~ 94 (202)
T cd04185 74 RAYELGYDWIWLMDDDAIPDP 94 (202)
T ss_pred HHhccCCCEEEEeCCCCCcCh
Confidence 888778999999999997654
No 7
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=44.38 E-value=51 Score=32.30 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=44.4
Q ss_pred CCchhhhHHHhhhH-HHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 004374 385 PFSEEKDLHVNVGR-LIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (758)
Q Consensus 385 Df~~E~~ly~~sg~-lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (758)
.|..|+---+-... |++.+..=.......-+++++|....++ .|=+..++..+..=-+.|++-||+||
T Consensus 73 ~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~~FP 141 (141)
T cd03565 73 RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD-AFRGSPDLTGVVEVYEELKKKGIEFP 141 (141)
T ss_pred HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH-HhCCCccchHHHHHHHHHHHcCCCCC
Confidence 35666655555555 6666642211223466777777777775 35445677778888888999999998
No 8
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=43.54 E-value=54 Score=32.08 Aligned_cols=88 Identities=17% Similarity=0.168 Sum_probs=46.1
Q ss_pred EEEEeccCChH---HHHhhhc--cCC--eEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCC-ccc-hhHH
Q 004374 109 IVVSVDRYPTD---SLKKLVK--IKG--WQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDS-YVR-KSCG 179 (758)
Q Consensus 109 IVvTtI~~Pt~---~v~~la~--~~~--w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~S-yaR-KNiG 179 (758)
|||++-+.+.. .++.|++ .+. ..++||=|..++.. ...+. .+......-..+++... .++ |..+
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t-----~~~~~--~~~~~~~~~v~~~~~~~~~~~g~~~a 73 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGT-----VQILE--FAAAKPNFQLKILNNSRVSISGKKNA 73 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcCh-----HHHHH--HHHhCCCcceEEeeccCcccchhHHH
Confidence 57777887733 2333332 344 89999988655432 22222 12222221223333332 111 2233
Q ss_pred HHHHHH-cCCeEEEeecCCCCccCC
Q 004374 180 YLFAIQ-HGAKKIFDADDRGDVIGD 203 (758)
Q Consensus 180 YLyAI~-~GAe~IydtDDDN~p~~~ 203 (758)
.-+++. .++++|.-+|+|..+..+
T Consensus 74 ~n~g~~~~~~d~i~~~D~D~~~~~~ 98 (229)
T cd04192 74 LTTAIKAAKGDWIVTTDADCVVPSN 98 (229)
T ss_pred HHHHHHHhcCCEEEEECCCcccCHH
Confidence 344444 478999999999987643
No 9
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.43 E-value=73 Score=29.16 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=43.7
Q ss_pred EEEEeccCChHHHHhh----hc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcC-CccccccCCCCccc-hhHHH
Q 004374 109 IVVSVDRYPTDSLKKL----VK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG-FRVLDFLPYDSYVR-KSCGY 180 (758)
Q Consensus 109 IVvTtI~~Pt~~v~~l----a~--~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~-f~~~~~LP~~SyaR-KNiGY 180 (758)
||+++-+.+ +.++++ .+ ...+.++||-|..|+..-.. -++... ..+...-+-.+.++ +|.|.
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPDFEVIVVDNASTDGSVEL---------LRELFPEVRLIRNGENLGFGAGNNQGI 70 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCCeEEEEEECCCCchHHHH---------HHHhCCCeEEEecCCCcChHHHhhHHH
Confidence 467767775 444433 32 25799999999877653110 000001 11111101111122 45565
Q ss_pred HHHHHcCCeEEEeecCCCCccC
Q 004374 181 LFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 181 LyAI~~GAe~IydtDDDN~p~~ 202 (758)
-.| ++++|.-+|||..+..
T Consensus 71 ~~~---~~~~i~~~D~D~~~~~ 89 (166)
T cd04186 71 REA---KGDYVLLLNPDTVVEP 89 (166)
T ss_pred hhC---CCCEEEEECCCcEECc
Confidence 555 7899999999998654
No 10
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=35.98 E-value=1.8e+02 Score=28.95 Aligned_cols=88 Identities=20% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEEeccCChHHHHh----hhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcC--CccccccCCCCc--cchhH
Q 004374 109 IVVSVDRYPTDSLKK----LVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG--FRVLDFLPYDSY--VRKSC 178 (758)
Q Consensus 109 IVvTtI~~Pt~~v~~----la~--~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~--f~~~~~LP~~Sy--aRKNi 178 (758)
||+++-|.+.+.+++ |.+ .+.|.+|||-|.+|..... ..+ .+.+++.+ +++...-+-... +-.|.
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~----~~i-~~~~~~~~~~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALW----KPV-EAHCAQLGERFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHH----HHH-HHHHHHhCCcEEEEEcCCCCCCchHHHHH
Confidence 788888876555554 333 3679999999877654310 000 11222222 222211110111 11344
Q ss_pred HHHHHHHcCCeEEEeecCCCCccC
Q 004374 179 GYLFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 179 GYLyAI~~GAe~IydtDDDN~p~~ 202 (758)
|.-.|. .++++|.-+|+|..+..
T Consensus 77 g~~~a~-~~~d~i~~lD~D~~~~~ 99 (236)
T cd06435 77 ALERTA-PDAEIIAVIDADYQVEP 99 (236)
T ss_pred HHHhcC-CCCCEEEEEcCCCCcCH
Confidence 444432 13699999999987654
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=35.18 E-value=1.6e+02 Score=28.99 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=44.7
Q ss_pred eEEEEEeccCChHHHHh----hhc--cCC--eEEEEEeCCCCCCCCCCCCceeecHHHHhhcC----CccccccCCC-Cc
Q 004374 107 KWIVVSVDRYPTDSLKK----LVK--IKG--WQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG----FRVLDFLPYD-SY 173 (758)
Q Consensus 107 ~wIVvTtI~~Pt~~v~~----la~--~~~--w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~----f~~~~~LP~~-Sy 173 (758)
.-||+++-+.+.+.+++ +.+ .+. |.++||-|..|+.. .+--++++ ..+.. .+-+ .+
T Consensus 3 vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t----------~~~~~~~~~~~~~~~~~-~~~~~~~ 71 (234)
T cd06421 3 VDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPEL----------RALAAELGVEYGYRYLT-RPDNRHA 71 (234)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhH----------HHHHHHhhcccCceEEE-eCCCCCC
Confidence 46888888876454443 222 355 99999988765542 11112221 11111 1111 11
Q ss_pred cc--hhHHHHHHHHcCCeEEEeecCCCCccC
Q 004374 174 VR--KSCGYLFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 174 aR--KNiGYLyAI~~GAe~IydtDDDN~p~~ 202 (758)
.. .|.|.-. .+.++|+-+|+|..+..
T Consensus 72 ~~~~~n~~~~~---a~~d~i~~lD~D~~~~~ 99 (234)
T cd06421 72 KAGNLNNALAH---TTGDFVAILDADHVPTP 99 (234)
T ss_pred cHHHHHHHHHh---CCCCEEEEEccccCcCc
Confidence 11 2333332 37899999999998754
No 12
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=32.81 E-value=1.5e+02 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCeEEEEEeccCChHHHHh----hhc----------cCCeEEEEEeCCCCCCC
Q 004374 104 RSEKWIVVSVDRYPTDSLKK----LVK----------IKGWQVLAIGNSRTPKN 143 (758)
Q Consensus 104 ~~~~wIVvTtI~~Pt~~v~~----la~----------~~~w~lvVVgD~kTP~d 143 (758)
....-|||++-|.. +.+.+ +.+ ...+.++||=|-.|...
T Consensus 69 ~~~isVVIP~yNe~-~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T 121 (333)
T PTZ00260 69 DVDLSIVIPAYNEE-DRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKT 121 (333)
T ss_pred CeEEEEEEeeCCCH-HHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCch
Confidence 34567888876665 43433 221 12699999998776544
No 13
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=30.51 E-value=1.2e+02 Score=27.36 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=43.3
Q ss_pred EEEEeccCChHHHHhh----hc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCcccccc---CCCC-ccchhH
Q 004374 109 IVVSVDRYPTDSLKKL----VK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFL---PYDS-YVRKSC 178 (758)
Q Consensus 109 IVvTtI~~Pt~~v~~l----a~--~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~L---P~~S-yaRKNi 178 (758)
||+++-+.+ +.+.++ .+ ...+.++||-|..++..-.. + .............+ +-.. ..-.|.
T Consensus 1 Viip~~n~~-~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~-----~--~~~~~~~~~~~~~~~~~~~~g~~~~~n~ 72 (180)
T cd06423 1 IIVPAYNEE-AVIERTIESLLALDYPKLEVIVVDDGSTDDTLEI-----L--EELAALYIRRVLVVRDKENGGKAGALNA 72 (180)
T ss_pred CeecccChH-HHHHHHHHHHHhCCCCceEEEEEeCCCccchHHH-----H--HHHhccccceEEEEEecccCCchHHHHH
Confidence 567777777 444443 22 25899999988766443110 0 00001000101111 0111 112466
Q ss_pred HHHHHHHcCCeEEEeecCCCCccC
Q 004374 179 GYLFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 179 GYLyAI~~GAe~IydtDDDN~p~~ 202 (758)
|.-+| .+++|.-+|+|..+..
T Consensus 73 ~~~~~---~~~~i~~~D~D~~~~~ 93 (180)
T cd06423 73 GLRHA---KGDIVVVLDADTILEP 93 (180)
T ss_pred HHHhc---CCCEEEEECCCCCcCh
Confidence 65554 7899999999998754
No 14
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=26.27 E-value=1.3e+02 Score=28.94 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=42.6
Q ss_pred EEEEeccCCh-HHHHhhh----c--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCC-Cccc-hhHH
Q 004374 109 IVVSVDRYPT-DSLKKLV----K--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYD-SYVR-KSCG 179 (758)
Q Consensus 109 IVvTtI~~Pt-~~v~~la----~--~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~-SyaR-KNiG 179 (758)
||++|-+... +.+++.. + ...+.++||-|..+..+ ..-+--+.++..+.++... +-+ ..++ .|.|
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~-----t~~~~~~~~~~~~i~~i~~-~~n~G~~~a~N~g 75 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQS-----LNEVLEEFKRKLPLKVVPL-EKNRGLGKALNEG 75 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchh-----HHHHHHHHHhcCCeEEEEc-CccccHHHHHHHH
Confidence 6777777653 4555442 2 34699999998663222 1000001112222222111 111 1111 4555
Q ss_pred HHHHHHcCCeEEEeecCCCCccCC
Q 004374 180 YLFAIQHGAKKIFDADDRGDVIGD 203 (758)
Q Consensus 180 YLyAI~~GAe~IydtDDDN~p~~~ 203 (758)
.-.| +.++|+-+|+|-.+..+
T Consensus 76 ~~~a---~gd~i~~lD~Dd~~~~~ 96 (201)
T cd04195 76 LKHC---TYDWVARMDTDDISLPD 96 (201)
T ss_pred HHhc---CCCEEEEeCCccccCcH
Confidence 5433 57899999999876553
No 15
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=24.76 E-value=1.8e+02 Score=27.42 Aligned_cols=84 Identities=8% Similarity=0.117 Sum_probs=42.6
Q ss_pred EEEEeccCChHHHHh----hhc--cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCc----cchhH
Q 004374 109 IVVSVDRYPTDSLKK----LVK--IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSY----VRKSC 178 (758)
Q Consensus 109 IVvTtI~~Pt~~v~~----la~--~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~Sy----aRKNi 178 (758)
||+++-+.+ +.+++ +.+ ...++++||-|..|... ...+ .+.++..++++....--+.- +-.|.
T Consensus 1 ivip~~n~~-~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 73 (182)
T cd06420 1 LIITTYNRP-EALELVLKSVLNQSILPFEVIIADDGSTEET-----KELI-EEFKSQFPIPIKHVWQEDEGFRKAKIRNK 73 (182)
T ss_pred CEEeecCCh-HHHHHHHHHHHhccCCCCEEEEEeCCCchhH-----HHHH-HHHHhhcCCceEEEEcCCcchhHHHHHHH
Confidence 567767766 43433 332 36799999988654431 0011 11122222222222111111 11344
Q ss_pred HHHHHHHcCCeEEEeecCCCCccC
Q 004374 179 GYLFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 179 GYLyAI~~GAe~IydtDDDN~p~~ 202 (758)
|.=. ..+++|.-+|+|..+..
T Consensus 74 g~~~---a~g~~i~~lD~D~~~~~ 94 (182)
T cd06420 74 AIAA---AKGDYLIFIDGDCIPHP 94 (182)
T ss_pred HHHH---hcCCEEEEEcCCcccCH
Confidence 4433 45799999999998754
No 16
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=24.73 E-value=1.4e+02 Score=29.54 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=45.3
Q ss_pred EEEEEeccCChHHHHhh----hccCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCcccccc--CCCCccc-hhHHH
Q 004374 108 WIVVSVDRYPTDSLKKL----VKIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFL--PYDSYVR-KSCGY 180 (758)
Q Consensus 108 wIVvTtI~~Pt~~v~~l----a~~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~L--P~~SyaR-KNiGY 180 (758)
-||+++-+.+.+.+.+. .+....+++||-|..|...-. .| + | ...+.....+ +-...++ .|.|.
T Consensus 3 sVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~-----~l--~-~-~~~~~~~~v~~~~~~g~~~a~n~g~ 73 (235)
T cd06434 3 TVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLS-----IL--S-Q-TVKYGGIFVITVPHPGKRRALAEGI 73 (235)
T ss_pred EEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHH-----HH--H-h-hccCCcEEEEecCCCChHHHHHHHH
Confidence 47888888884544333 333468999998877654211 11 1 1 1111111111 1111111 13343
Q ss_pred HHHHHcCCeEEEeecCCCCccCCC
Q 004374 181 LFAIQHGAKKIFDADDRGDVIGDD 204 (758)
Q Consensus 181 LyAI~~GAe~IydtDDDN~p~~~~ 204 (758)
-.| .+++|+-+|+|..+..+-
T Consensus 74 ~~a---~~d~v~~lD~D~~~~~~~ 94 (235)
T cd06434 74 RHV---TTDIVVLLDSDTVWPPNA 94 (235)
T ss_pred HHh---CCCEEEEECCCceeChhH
Confidence 332 789999999999988753
No 17
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=24.18 E-value=2.9e+02 Score=30.80 Aligned_cols=90 Identities=17% Similarity=0.116 Sum_probs=48.0
Q ss_pred CCeEEEEEeccCChHHHHhh----hc--cC-CeEEEEEeCCCCCCCCCCCCceeecHHHHhhcC----Cccccc--cCCC
Q 004374 105 SEKWIVVSVDRYPTDSLKKL----VK--IK-GWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLG----FRVLDF--LPYD 171 (758)
Q Consensus 105 ~~~wIVvTtI~~Pt~~v~~l----a~--~~-~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~----f~~~~~--LP~~ 171 (758)
...-|||.+-|.. +.+.++ .+ .+ .+.++||-|..|...... + .+..++.+ .++... .|-
T Consensus 40 p~VSVIIpa~Ne~-~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i-----~-~~~~~~~~~~~~i~vi~~~~~~~- 111 (384)
T TIGR03469 40 PAVVAVVPARNEA-DVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADI-----A-RAAARAYGRGDRLTVVSGQPLPP- 111 (384)
T ss_pred CCEEEEEecCCcH-hHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHH-----H-HHHHHhcCCCCcEEEecCCCCCC-
Confidence 3467888877776 444443 32 33 589999999877643211 1 01111121 222221 111
Q ss_pred Cccch----hHHHHHHHHcC--CeEEEeecCCCCccC
Q 004374 172 SYVRK----SCGYLFAIQHG--AKKIFDADDRGDVIG 202 (758)
Q Consensus 172 SyaRK----NiGYLyAI~~G--Ae~IydtDDDN~p~~ 202 (758)
...-| |.|.-.|...+ .++|.-+|+|..+..
T Consensus 112 g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p 148 (384)
T TIGR03469 112 GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGP 148 (384)
T ss_pred CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCCh
Confidence 11223 44555544333 799999999998754
No 18
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=23.12 E-value=1.7e+02 Score=28.94 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 004374 385 PFSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (758)
Q Consensus 385 Df~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (758)
.|..|+---+-.+.|++.+..= .....-+++++|....++ .|-...++.++..=-+.|++-||.||
T Consensus 71 ~fh~evask~Fl~eL~kl~~~~--~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~y~~L~~~G~~f~ 136 (144)
T cd03568 71 RFHQEVASRDFTQELKKLINDR--VHPTVKEKLREVVKQWAD-EFKNDPSLSLMSDLYKKLKNEGPDLV 136 (144)
T ss_pred HHHHHHhhHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHH-HhCCCcccHHHHHHHHHHHHcCCCCC
Confidence 3677776666666666666552 344677888888887763 45566788889999999999999999
No 19
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=21.66 E-value=4.4e+02 Score=22.91 Aligned_cols=87 Identities=10% Similarity=0.101 Sum_probs=42.6
Q ss_pred EEEEeccCChH---HHHhhhccC--CeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccchhHHHHHH
Q 004374 109 IVVSVDRYPTD---SLKKLVKIK--GWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGYLFA 183 (758)
Q Consensus 109 IVvTtI~~Pt~---~v~~la~~~--~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~SyaRKNiGYLyA 183 (758)
||+++-+.+.. .++.+.+.. .++++++-|..++..... .....+... ....++......+.-++-+|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~ 72 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEI-------LEEYAKKDP-RVIRVINEENQGLAAARNAG 72 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHH-------HHHHHhcCC-CeEEEEecCCCChHHHHHHH
Confidence 35555565522 334444443 799999988766543111 011111101 11112222222233333344
Q ss_pred HHc-CCeEEEeecCCCCccCC
Q 004374 184 IQH-GAKKIFDADDRGDVIGD 203 (758)
Q Consensus 184 I~~-GAe~IydtDDDN~p~~~ 203 (758)
+++ +.++++-+|+|..+..+
T Consensus 73 ~~~~~~d~v~~~d~D~~~~~~ 93 (156)
T cd00761 73 LKAARGEYILFLDADDLLLPD 93 (156)
T ss_pred HHHhcCCEEEEECCCCccCcc
Confidence 333 68999999999876553
No 20
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=20.95 E-value=2e+02 Score=28.16 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=43.1
Q ss_pred EEEEeccCChH---HHHhhhc--cCCeEEEEEeCCCCCCCCCC---CCceeecHHHHhhcCCccccccCCCCccchhHHH
Q 004374 109 IVVSVDRYPTD---SLKKLVK--IKGWQVLAIGNSRTPKNWNL---KGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGY 180 (758)
Q Consensus 109 IVvTtI~~Pt~---~v~~la~--~~~w~lvVVgD~kTP~dw~l---~~v~fLs~e~Q~~L~f~~~~~LP~~SyaRKNiGY 180 (758)
||+++-+.+.. .++.+++ ...+.+|||-|..|+..... .+++++. .-+-.+.+ .|.|.
T Consensus 3 vii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~~~~~~~~-------------~~~g~~~a-~n~g~ 68 (221)
T cd02522 3 IIIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARSAGVVVIS-------------SPKGRARQ-MNAGA 68 (221)
T ss_pred EEEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhcCCeEEEe-------------CCcCHHHH-HHHHH
Confidence 67777777632 2333333 25699999988766543221 2222221 11111222 36665
Q ss_pred HHHHHcCCeEEEeecCCCCccC
Q 004374 181 LFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 181 LyAI~~GAe~IydtDDDN~p~~ 202 (758)
-.|- .++|.-+|+|..+..
T Consensus 69 ~~a~---~~~i~~~D~D~~~~~ 87 (221)
T cd02522 69 AAAR---GDWLLFLHADTRLPP 87 (221)
T ss_pred Hhcc---CCEEEEEcCCCCCCh
Confidence 5442 599999999998754
No 21
>PRK10018 putative glycosyl transferase; Provisional
Probab=20.49 E-value=2e+02 Score=30.96 Aligned_cols=86 Identities=10% Similarity=0.160 Sum_probs=46.4
Q ss_pred CeEEEEEeccCChHHHHhhhc-----cCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccchhHHH
Q 004374 106 EKWIVVSVDRYPTDSLKKLVK-----IKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVRKSCGY 180 (758)
Q Consensus 106 ~~wIVvTtI~~Pt~~v~~la~-----~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~SyaRKNiGY 180 (758)
..-||+++-|.+....+.|.+ .+.|.++||-|-.| +.. ...+..++++..-..++. ..+|.|.
T Consensus 6 ~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~--~~~------~~~~~~~~~~~~ri~~i~----~~~n~G~ 73 (279)
T PRK10018 6 LISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCST--SWE------QLQQYVTALNDPRITYIH----NDINSGA 73 (279)
T ss_pred EEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC--CHH------HHHHHHHHcCCCCEEEEE----CCCCCCH
Confidence 356788877777433333332 46899999999776 210 011222232221111111 1245555
Q ss_pred HHHHH-----cCCeEEEeecCCCCccCC
Q 004374 181 LFAIQ-----HGAKKIFDADDRGDVIGD 203 (758)
Q Consensus 181 LyAI~-----~GAe~IydtDDDN~p~~~ 203 (758)
-.|.. ...++|.-+|+|-....+
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~ 101 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPN 101 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcc
Confidence 44433 347899999999876553
Done!