Query 004374
Match_columns 758
No_of_seqs 93 out of 103
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 23:12:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyq_A Hepatocyte growth facto 48.9 18 0.00062 36.4 5.1 70 386-458 80-149 (226)
2 2fy7_A Beta-1,4-galactosyltran 46.4 24 0.00081 36.5 5.7 71 105-203 65-145 (287)
3 1x5b_A Signal transducing adap 45.2 25 0.00085 33.8 5.2 69 386-457 87-155 (163)
4 3ldz_A STAM-1, signal transduc 35.1 31 0.001 32.2 4.0 64 386-453 77-140 (140)
5 1elk_A Target of MYB1; superhe 33.7 31 0.001 32.9 3.8 68 386-454 89-157 (157)
6 3ro3_B Minsc, peptide of prote 29.3 29 0.001 23.3 1.9 16 433-448 5-20 (22)
7 1dvp_A HRS, hepatocyte growth 27.4 51 0.0017 32.7 4.3 68 386-456 77-144 (220)
8 2wvl_A Mannosyl-3-phosphoglyce 24.8 38 0.0013 37.2 3.0 95 104-202 52-174 (391)
9 3bcv_A Putative glycosyltransf 17.2 2.3E+02 0.0079 26.5 6.5 53 324-380 172-226 (240)
10 2d0j_A Galactosylgalactosylxyl 15.8 1.9E+02 0.0064 29.9 5.7 14 188-202 101-114 (246)
No 1
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.87 E-value=18 Score=36.36 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=50.0
Q ss_pred CchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCccccc
Q 004374 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLMSL 458 (758)
Q Consensus 386 f~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~~~ 458 (758)
|..|+---+-.+.|++.+.. .....+-+++++|....++ .|=+..++..+..--+.|++-||+||.+...
T Consensus 80 f~~eias~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~~ 149 (226)
T 3zyq_A 80 VHDEVANKQTMEELKDLLKR--QVEVNVRNKILYLIQAWAH-AFRNEPKYKVVQDTYQIMKVEGHVFPEFKES 149 (226)
T ss_dssp HHHHHSSHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHH-HTTTCGGGHHHHHHHHHHHHHTCCCCCCCGG
T ss_pred HHHhhccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHHhcCCCcccchhH
Confidence 55555444445556665542 2334588899999888887 3666677888888899999999999987543
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=46.38 E-value=24 Score=36.54 Aligned_cols=71 Identities=13% Similarity=0.089 Sum_probs=48.1
Q ss_pred CCeEEEEEeccCChH---HHHhhh-----ccCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccccCCCCccc-
Q 004374 105 SEKWIVVSVDRYPTD---SLKKLV-----KIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDFLPYDSYVR- 175 (758)
Q Consensus 105 ~~~wIVvTtI~~Pt~---~v~~la-----~~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~LP~~SyaR- 175 (758)
...-|||++-|.+.. .++.|. ....+.++||-|.. | -+|+ .++
T Consensus 65 ~~VSIIIP~yN~~~~L~~~L~sl~~~l~q~~~~~EIiVVdds~---d----------------~~f~---------~a~a 116 (287)
T 2fy7_A 65 HKVAIIIPFRNRQEHLKYWLYYLHPVLQRQQLDYGIYVINQAG---D----------------TIFN---------RAKL 116 (287)
T ss_dssp CEEEEEEEESSCHHHHHHHHHHHHHHHHHTTCEEEEEEEEECS---S----------------SCCC---------HHHH
T ss_pred CcEEEEEeeCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEeCC---C----------------Cccc---------hhhh
Confidence 347888998887732 233333 13578999998821 1 1221 122
Q ss_pred hhHHHHHHHH-cCCeEEEeecCCCCccCC
Q 004374 176 KSCGYLFAIQ-HGAKKIFDADDRGDVIGD 203 (758)
Q Consensus 176 KNiGYLyAI~-~GAe~IydtDDDN~p~~~ 203 (758)
+|+|+..|++ ...++|+-+|+|-.+..+
T Consensus 117 ~N~G~~~al~~A~gd~i~flD~D~i~~~d 145 (287)
T 2fy7_A 117 LNVGFQEALKDYDYTCFVFSDVDLIPMND 145 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEEECTTEEESBT
T ss_pred hhhHHHHHHHhCCCCEEEEECCCcccCCC
Confidence 7999999975 478999999999988775
No 3
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=45.25 E-value=25 Score=33.76 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=46.7
Q ss_pred CchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCcccc
Q 004374 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLMS 457 (758)
Q Consensus 386 f~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~~ 457 (758)
|..|+---+-.++|++.+. +.....+-+++++|...-++ .|=+..++..+..--+.|++-||+||.+..
T Consensus 87 Fh~evas~~Fl~el~~l~~--~~~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~Y~~Lk~~G~~FP~~~~ 155 (163)
T 1x5b_A 87 FHLEVCSRDFATEVRAVIK--NKAHPKVCEKLKSLMVEWSE-EFQKDPQFSLISATIKSMKEEGITFPPAGS 155 (163)
T ss_dssp HHHHHTSHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHHHH-HTTTCSTTHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHhhHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHH-HhcCCcccHHHHHHHHHHHHcCCCCCCCCC
Confidence 5555555445555665553 22334577888888887776 344556678888888899999999997543
No 4
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=35.11 E-value=31 Score=32.24 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=40.1
Q ss_pred CchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 004374 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (758)
Q Consensus 386 f~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (758)
|..|+---+-.+.|++.+.. .....-+++++|....++ .|=+..++..+..--+.|++-||+||
T Consensus 77 f~~evas~~Fl~el~~l~~~---~~~~Vk~kil~li~~W~~-~f~~~~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 77 FHLEVCSRDFASEVSNVLNK---GHPKVCEKLKALMVEWTD-EFKNDPQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHHSSHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHH-HHTTCGGGTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHhhHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHccCcCc
Confidence 34444333334444444421 233577888888777665 33344567778888889999999999
No 5
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=33.68 E-value=31 Score=32.86 Aligned_cols=68 Identities=22% Similarity=0.244 Sum_probs=40.9
Q ss_pred CchhhhHHHhhhH-HHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCc
Q 004374 386 FSEEKDLHVNVGR-LIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR 454 (758)
Q Consensus 386 f~~E~~ly~~sg~-lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~ 454 (758)
|..|+---+-.++ |++.+..=......+-+++++|...-++. |=+..+...+..--+.|++-||+||.
T Consensus 89 fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~-f~~~p~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 89 FHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA-FRSSPDLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCC
Confidence 4445444444444 44444321112234677777777766653 33345677788888899999999993
No 6
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=29.34 E-value=29 Score=23.27 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHhc
Q 004374 433 RDVKFTAAWLQDLIAV 448 (758)
Q Consensus 433 ~Dv~l~~aWL~DL~~v 448 (758)
-+|+..+.|++||+-+
T Consensus 5 ~qvDSV~rWmeDLr~M 20 (22)
T 3ro3_B 5 MQVDSVQRWMEDLKLM 20 (26)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 3678899999999854
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=27.42 E-value=51 Score=32.69 Aligned_cols=68 Identities=25% Similarity=0.212 Sum_probs=45.0
Q ss_pred CchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCccc
Q 004374 386 FSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLM 456 (758)
Q Consensus 386 f~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~ 456 (758)
|..|+---+-.+.|++.+.+ .....+-+++++|....++. |=+..+...+..=.+.|++-|+.||.+.
T Consensus 77 f~~eva~~~fl~~l~~l~~~--~~~~~Vk~kil~li~~W~~~-f~~~~~~~~i~~~y~~Lk~~G~~FP~~~ 144 (220)
T 1dvp_A 77 VHEEVFTKENCEMFSSFLES--TPHENVRQKMLELVQTWAYA-FRSSDKYQAIKDTMTILKAKGHTFPELR 144 (220)
T ss_dssp HHHHHSSHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHH-TTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHhHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHhhcCccccccc
Confidence 44444444444455555544 22345778888888877765 5455566677777889999999999873
No 8
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=24.79 E-value=38 Score=37.23 Aligned_cols=95 Identities=20% Similarity=0.206 Sum_probs=56.0
Q ss_pred CCCeEEEEEeccCChHHHHhhhc--cCCeEEEEEeCCCCCCCCC-------------CCCceeecHHHHhhcCCc-----
Q 004374 104 RSEKWIVVSVDRYPTDSLKKLVK--IKGWQVLAIGNSRTPKNWN-------------LKGAIFLSLDMQANLGFR----- 163 (758)
Q Consensus 104 ~~~~wIVvTtI~~Pt~~v~~la~--~~~w~lvVVgD~kTP~dw~-------------l~~v~fLs~e~Q~~L~f~----- 163 (758)
...--|||..-|.-.-.++.+.+ ..++.+++|=|.+ |.++. ...+...- |+.-|.+
T Consensus 52 ~~klSIVVPvYNEe~~lLesVl~qi~~d~eIIlVdDGS-~D~s~~e~dil~~~~~~~~~ri~viH---Qkn~gls~Ar~~ 127 (391)
T 2wvl_A 52 LEQTAIVVPTRNERLKLLEGVLSGIPHEALILVASNSS-PDRFQMERDLLEEFAHLTERPALIFH---QKDPALAEALRA 127 (391)
T ss_dssp HTTEEEEEEESSCCHHHHHHHHHTSCTTSEEEEEECCC-HHHHHHHHHHHHHHHHHTTCCEEEEE---TTCHHHHHHHHH
T ss_pred HhceEEEEeccCcHHHHHHHHHhcCCCCceEEEEECCC-CCChHhHHHHHHHHHhhcccceEEEe---ccChHHHHHHHh
Confidence 44568999988877656666653 3589999999977 33321 11222221 3322211
Q ss_pred --cccccCCCCccc--hh----HHHHHHHHcCCeEEEeecCCCCccC
Q 004374 164 --VLDFLPYDSYVR--KS----CGYLFAIQHGAKKIFDADDRGDVIG 202 (758)
Q Consensus 164 --~~~~LP~~SyaR--KN----iGYLyAI~~GAe~IydtDDDN~p~~ 202 (758)
+.++|=-+...| |- +|.+.|-..|+++|-.+|-||+.-+
T Consensus 128 ~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~ 174 (391)
T 2wvl_A 128 GGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPG 174 (391)
T ss_dssp TTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHH
T ss_pred cCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCcc
Confidence 122222223333 32 3566776669999999999999744
No 9
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=17.17 E-value=2.3e+02 Score=26.53 Aligned_cols=53 Identities=15% Similarity=0.205 Sum_probs=28.0
Q ss_pred ccccccccccchhh--eeccccccccchhhHHHHHHHHHHHHcCcEEEEcCCeeeeecC
Q 004374 324 NSFNTIYQSSAFWA--LMLPVSVSTMASDVLRGFWGQRLLWEIGGYVVVYPPTVHRYDK 380 (758)
Q Consensus 324 NSQNTlfh~~AFw~--L~LP~tvs~R~tDIWRgY~~QrlLw~~G~~v~F~pP~v~q~RN 380 (758)
+.-+.+|.+++|=. +-++-.-.....|.. |.-|+ ...|..+.+.|-.+.++|.
T Consensus 172 ~~~~~~~rr~~~~~~g~~f~~~~~~~~eD~~---~~~r~-~~~g~~i~~~~~~~~~yr~ 226 (240)
T 3bcv_A 172 SAKVVLYRRNLIEKKHLRFVSERILPSEDLI---FNVDV-LANSNIVCVLPQTFYNYRT 226 (240)
T ss_dssp TCSCEEEEHHHHHHTTCCCCCTTTCTTHHHH---HHHHH-HTTCSCEEECC--------
T ss_pred chhheeeeHHHHHHcCCccCCCCCccCCCHH---HHHHH-HHhCCEEEEECCCeEEEEe
Confidence 34567888888875 444433222346753 34444 4568999999977777774
No 10
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=15.75 E-value=1.9e+02 Score=29.95 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=11.1
Q ss_pred CeEEEeecCCCCccC
Q 004374 188 AKKIFDADDRGDVIG 202 (758)
Q Consensus 188 Ae~IydtDDDN~p~~ 202 (758)
.=++|.+||||. ++
T Consensus 101 ~GVVyFADDdNt-Y~ 114 (246)
T 2d0j_A 101 PGVLFFADDDNT-YS 114 (246)
T ss_dssp CCEEEECCTTCE-EC
T ss_pred cceEEEccCCCc-cc
Confidence 368999999994 44
Done!