Query 004374
Match_columns 758
No_of_seqs 93 out of 103
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 23:12:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dvpa1 a.118.9.2 (A:1-145) Hr 50.8 5.5 0.0004 35.2 3.8 69 385-456 76-144 (145)
2 d1elka_ a.118.9.2 (A:) Tom1 pr 28.3 23 0.0017 31.3 4.2 41 412-453 112-152 (153)
3 d1o66a_ c.1.12.8 (A:) Ketopant 20.3 29 0.0021 33.6 3.4 86 104-192 13-111 (260)
4 d1omza_ c.68.1.15 (A:) Alpha-1 16.6 81 0.0059 26.4 5.2 28 175-202 64-96 (265)
5 d1m3ua_ c.1.12.8 (A:) Ketopant 14.9 38 0.0028 32.8 2.8 84 104-192 13-110 (262)
6 d1v54l_ f.23.6.1 (L:) Mitochon 11.6 1.1E+02 0.0083 22.2 3.8 33 25-60 6-41 (46)
7 d2f8aa1 c.47.1.10 (A:12-195) G 9.2 87 0.0063 28.1 3.1 45 498-542 14-62 (184)
8 d3cu0a1 c.68.1.7 (A:75-335) 1, 9.1 2.5E+02 0.018 26.9 6.5 11 189-199 114-124 (261)
9 d1qg8a_ c.68.1.1 (A:) Spore co 8.2 1.1E+02 0.0084 26.8 3.5 89 107-202 3-103 (255)
10 d1juqa_ a.118.9.2 (A:) ADP-rib 7.3 3.2E+02 0.023 23.4 6.0 65 386-454 74-141 (151)
No 1
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=50.81 E-value=5.5 Score=35.22 Aligned_cols=69 Identities=26% Similarity=0.224 Sum_probs=46.4
Q ss_pred CCchhhhHHHhhhHHHHHhccccCCcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCccc
Q 004374 385 PFSEEKDLHVNVGRLIKFLVSWRSNKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPRLM 456 (758)
Q Consensus 385 Df~~E~~ly~~sg~lv~fL~~W~~~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~l~ 456 (758)
.|..|+.-.+-...|++.+... +....-+++++|....++ .|-+..++..+..=-+.|++-||+||.|.
T Consensus 76 ~f~~~i~s~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~-~f~~~~~~~~i~~~y~~Lk~~G~~FP~l~ 144 (145)
T d1dvpa1 76 PVHEEVFTKENCEMFSSFLEST--PHENVRQKMLELVQTWAY-AFRSSDKYQAIKDTMTILKAKGHTFPELR 144 (145)
T ss_dssp HHHHHHSSHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHH-HTTTCSSCCHHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHhhHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHH-HhCCCccchHHHHHHHHHHHCCCCCcCCC
Confidence 3556655555556666666432 233577888888887777 45455566666666677999999999875
No 2
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.27 E-value=23 Score=31.32 Aligned_cols=41 Identities=29% Similarity=0.383 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCC
Q 004374 412 RFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQP 453 (758)
Q Consensus 412 ~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P 453 (758)
..-+++++|....++. |=+..+...+..=-+.|++-||+||
T Consensus 112 ~Vk~kil~li~~W~~~-f~~~p~~~~i~~~y~~Lk~~G~~FP 152 (153)
T d1elka_ 112 IVHDKVLNLIQSWADA-FRSSPDLTGVVTIYEDLRRKGLEFP 152 (153)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHH-hcCCccchHHHHHHHHHHHCCCCCC
Confidence 3678888888877774 4445677778878888999999999
No 3
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}
Probab=20.34 E-value=29 Score=33.63 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCCeEEEEEeccCChHHHHhhhccCCeEEEEEeCC--------CCCCCCCCCCceeecHHHHhhcCCc-cccccCCCCcc
Q 004374 104 RSEKWIVVSVDRYPTDSLKKLVKIKGWQVLAIGNS--------RTPKNWNLKGAIFLSLDMQANLGFR-VLDFLPYDSYV 174 (758)
Q Consensus 104 ~~~~wIVvTtI~~Pt~~v~~la~~~~w~lvVVgD~--------kTP~dw~l~~v~fLs~e~Q~~L~f~-~~~~LP~~Sya 174 (758)
++++...+|.-++| .-+++.-.|-.+++|||+ ++-..-.++.+++-+.+-.+.-+-. +..-+||.||.
T Consensus 13 ~g~ki~~lTayd~~---~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~ 89 (260)
T d1o66a_ 13 AGEKIAMLTAYESS---FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQ 89 (260)
T ss_dssp HTCCEEEEECCSHH---HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSS
T ss_pred CCCcEEEEeCCCHH---HHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhc
Confidence 45778888855544 345566778899999996 2222223334444444333444333 35558999997
Q ss_pred chhHHHHHH----HHcCCeEEE
Q 004374 175 RKSCGYLFA----IQHGAKKIF 192 (758)
Q Consensus 175 RKNiGYLyA----I~~GAe~Iy 192 (758)
-.+--++-| ++.||+-|.
T Consensus 90 ~~~~~~~~a~~~~~~~gadavk 111 (260)
T d1o66a_ 90 QSKEQAFAAAAELMAAGAHMVK 111 (260)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEE
T ss_pred chhHHHHHHHHHHHHhhhhhcc
Confidence 765444443 467999774
No 4
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.65 E-value=81 Score=26.43 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=19.6
Q ss_pred chhHHHHHHHHcCC-----eEEEeecCCCCccC
Q 004374 175 RKSCGYLFAIQHGA-----KKIFDADDRGDVIG 202 (758)
Q Consensus 175 RKNiGYLyAI~~GA-----e~IydtDDDN~p~~ 202 (758)
.+|.|..-|..+|+ |+|.-+|||-.+..
T Consensus 64 ~~~~g~~~a~n~~~~~a~ge~i~~lD~D~~~~~ 96 (265)
T d1omza_ 64 PQTANKMRNRLQVFPEVETNAVLMVDDDTLISA 96 (265)
T ss_dssp ECSSCCGGGGGSCCTTCCSSEEEEECTTEEECH
T ss_pred cCCCCchhhhhhhHHhCCcCEEEEeCcccCCCH
Confidence 35555555555554 89999999987655
No 5
>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}
Probab=14.94 E-value=38 Score=32.82 Aligned_cols=84 Identities=17% Similarity=0.250 Sum_probs=47.1
Q ss_pred CCCeEEEEEeccCChHHHHhhhccCCeEEEEEeCCCCCCCCCCCCceeecHHHHh--------hcCCc-cccccCCCCcc
Q 004374 104 RSEKWIVVSVDRYPTDSLKKLVKIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQA--------NLGFR-VLDFLPYDSYV 174 (758)
Q Consensus 104 ~~~~wIVvTtI~~Pt~~v~~la~~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~--------~L~f~-~~~~LP~~Sya 174 (758)
++++...+|.-++|+. +++...|-.++.|||+-.-.-+..++..=.++|+.. .-+-. ++.=+||.||.
T Consensus 13 ~g~ki~~lTayD~~~A---~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~ 89 (262)
T d1m3ua_ 13 EKKRFATITAYDYSFA---KLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYA 89 (262)
T ss_dssp HTCCEEEEECCSHHHH---HHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSS
T ss_pred CCCcEEEEEcCCHHHH---HHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEeccccccch
Confidence 4568888887777744 445556788999999521111112222223333333 22222 23337888875
Q ss_pred -----chhHHHHHHHHcCCeEEE
Q 004374 175 -----RKSCGYLFAIQHGAKKIF 192 (758)
Q Consensus 175 -----RKNiGYLyAI~~GAe~Iy 192 (758)
+||.+-| ++.||+-|.
T Consensus 90 ~~~~a~~~a~~l--~~~GAdaVK 110 (262)
T d1m3ua_ 90 TPEQAFENAATV--MRAGANMVK 110 (262)
T ss_dssp SHHHHHHHHHHH--HHTTCSEEE
T ss_pred hhHHHHHHHHHH--HhcCCcEEE
Confidence 3455433 589999984
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.63 E-value=1.1e+02 Score=22.18 Aligned_cols=33 Identities=21% Similarity=0.457 Sum_probs=22.8
Q ss_pred CCCccccchhhcccchhhHHHHHHH---HHHHHHHHhhc
Q 004374 25 DSKSLDFSTWVRDNLFKIVTVLLLI---ATIAALSFLRN 60 (758)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 60 (758)
+-+||+|| .+|-.|+.....++ .-+++|+.+|-
T Consensus 6 PG~NLPFs---v~Nk~rLla~m~~~fGsgfa~PF~ivRh 41 (46)
T d1v54l_ 6 PGKNIPFS---VENKWRLLAMMTLFFGSGFAAPFFIVRH 41 (46)
T ss_dssp TTTSSSSC---CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcc---chhHHHHHHHHHHHHhccccchHHHHHH
Confidence 45888887 47888887655443 34677887773
No 7
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=87 Score=28.10 Aligned_cols=45 Identities=20% Similarity=0.225 Sum_probs=31.3
Q ss_pred cchhhhhcccCCEEEEEEcCc---cccccHHHHHHHhhccCCE-EEEee
Q 004374 498 GNLIRWRKNFGNVVLIMFCSG---PVERTALEWRLLYGRIFKT-VIILS 542 (758)
Q Consensus 498 g~~~~wr~~~~nvVLIv~~n~---p~~~~~~~~r~lY~p~F~~-VVf~g 542 (758)
|..+.=.++-|.+|||++.-. +-.+.+..+++||+.|-.. .+|+|
T Consensus 14 g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~ 62 (184)
T d2f8aa1 14 GEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLG 62 (184)
T ss_dssp SSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEE
T ss_pred CCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEE
Confidence 445666777889999986433 3455688899999988644 55555
No 8
>d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.08 E-value=2.5e+02 Score=26.90 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=9.7
Q ss_pred eEEEeecCCCC
Q 004374 189 KKIFDADDRGD 199 (758)
Q Consensus 189 e~IydtDDDN~ 199 (758)
=++|.+||||.
T Consensus 114 GVVyFADDdNt 124 (261)
T d3cu0a1 114 GVVYFADDDNT 124 (261)
T ss_dssp EEEEECCTTSE
T ss_pred eEEEEecCCCc
Confidence 68999999994
No 9
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=8.23 E-value=1.1e+02 Score=26.83 Aligned_cols=89 Identities=10% Similarity=0.120 Sum_probs=48.8
Q ss_pred eEEEEEeccCChHHHHhh----h--ccCCeEEEEEeCCCCCCCCCCCCceeecHHHHhhcCCccccc-cCCCCccchhHH
Q 004374 107 KWIVVSVDRYPTDSLKKL----V--KIKGWQVLAIGNSRTPKNWNLKGAIFLSLDMQANLGFRVLDF-LPYDSYVRKSCG 179 (758)
Q Consensus 107 ~wIVvTtI~~Pt~~v~~l----a--~~~~w~lvVVgD~kTP~dw~l~~v~fLs~e~Q~~L~f~~~~~-LP~~SyaRKNiG 179 (758)
.-||+++-|.+ ..+++. . ..+.|.++||=|-.|...+. .|. +.++....++... ...-...-+|.|
T Consensus 3 vSiiip~yN~~-~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~-----~l~-~~~~~~~i~~~~~~~~~~~~~~~~~g 75 (255)
T d1qg8a_ 3 VSVIMTSYNKS-DYVAKSISSILSQTFSDFELFIMDDNSNEETLN-----VIR-PFLNDNRVRFYQSDISGVKERTEKTR 75 (255)
T ss_dssp EEEEEEESSCT-TTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHH-----HHG-GGGGSTTEEEEECCCCSHHHHHSSCH
T ss_pred EEEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEECCCCccHHH-----HHH-Hhhhhcccccccccccccccccccch
Confidence 34788877776 444443 2 25789999998866554321 111 1112222222111 001122236777
Q ss_pred HHHHHHcC-----CeEEEeecCCCCccC
Q 004374 180 YLFAIQHG-----AKKIFDADDRGDVIG 202 (758)
Q Consensus 180 YLyAI~~G-----Ae~IydtDDDN~p~~ 202 (758)
+-.|...| .++|.-+|+|..+..
T Consensus 76 ~~~a~N~gi~~a~g~~i~~lD~Dd~~~p 103 (255)
T d1qg8a_ 76 YAALINQAIEMAEGEYITYATDDNIYMP 103 (255)
T ss_dssp HHHHHHHHHHHCCCSEEEEEETTEEECT
T ss_pred hccccccccccccccccccccccccccc
Confidence 77665554 579999999988754
No 10
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.31 E-value=3.2e+02 Score=23.36 Aligned_cols=65 Identities=20% Similarity=0.099 Sum_probs=39.0
Q ss_pred CchhhhHHHhhhHHHHHhccccC---CcccHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHhcCCCCCc
Q 004374 386 FSEEKDLHVNVGRLIKFLVSWRS---NKHRFFEKVLELSHSMAEEGFWTERDVKFTAAWLQDLIAVGYQQPR 454 (758)
Q Consensus 386 f~~E~~ly~~sg~lv~fL~~W~~---~~~~l~e~i~~L~~~m~e~gfw~~~Dv~l~~aWL~DL~~vGy~~P~ 454 (758)
|..|+.--+-.++|++.+..=.. .....-+++++|....++. | .+...+..=-+.|++-||.||.
T Consensus 74 F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~-f---~~~~~~~~~Y~~Lk~~Gv~fp~ 141 (151)
T d1juqa_ 74 FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA-L---PEEAKIKDAYHMLKRQGIVQSD 141 (151)
T ss_dssp HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH-C---TTCHHHHHHHHHHHHTTSCSSC
T ss_pred HHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH-c---cccHHHHHHHHHHHHcCCCCCC
Confidence 55555544445556665544211 1223778888888877653 3 2344444446689999999983
Done!