Query 004376
Match_columns 758
No_of_seqs 206 out of 1083
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 4E-131 1E-135 1165.9 67.3 707 11-758 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 3E-128 1E-132 1140.5 67.8 695 8-758 56-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 3.4E-77 1.1E-81 650.1 31.7 357 387-758 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 1.9E-65 6.5E-70 564.5 38.3 367 9-402 28-396 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 2.1E-63 7.2E-68 541.7 28.8 354 7-384 9-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 100.0 1.2E-60 4.2E-65 524.5 36.0 357 5-384 9-380 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 3.3E-60 1.1E-64 514.6 38.6 344 7-385 6-353 (354)
8 3o2p_E Cell division control p 99.9 1.4E-25 4.9E-30 186.9 4.4 82 676-758 7-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 8.2E-26 2.8E-30 183.9 1.7 75 684-758 3-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 2E-25 6.8E-30 188.2 -0.8 82 677-758 11-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 9.1E-25 3.1E-29 186.7 2.9 80 677-758 16-95 (101)
12 1wi9_A Protein C20ORF116 homol 85.3 0.35 1.2E-05 37.9 1.8 53 698-758 13-65 (72)
13 3lmm_A Uncharacterized protein 84.5 0.38 1.3E-05 54.7 2.4 136 593-752 429-568 (583)
14 3cuo_A Uncharacterized HTH-typ 83.5 1.5 5E-05 36.5 5.3 49 593-643 23-71 (99)
15 2jt1_A PEFI protein; solution 82.3 1.3 4.3E-05 35.6 4.0 48 598-647 8-61 (77)
16 2dk5_A DNA-directed RNA polyme 82.1 1.3 4.3E-05 36.9 4.1 51 590-642 16-68 (91)
17 1p4x_A Staphylococcal accessor 82.0 1.3 4.3E-05 44.5 5.0 52 591-644 31-84 (250)
18 3jth_A Transcription activator 81.4 3 0.0001 34.7 6.4 50 593-645 22-71 (98)
19 3tgn_A ADC operon repressor AD 80.6 2.1 7E-05 38.4 5.5 52 590-644 34-85 (146)
20 3hsr_A HTH-type transcriptiona 80.6 1.5 5.2E-05 39.2 4.5 52 591-644 33-84 (140)
21 1qgp_A Protein (double strande 80.5 1.8 6.2E-05 34.7 4.4 46 596-643 16-64 (77)
22 3g3z_A NMB1585, transcriptiona 79.6 1.8 6.2E-05 38.8 4.7 51 592-644 29-79 (145)
23 1sfx_A Conserved hypothetical 78.9 1.6 5.5E-05 36.8 3.9 50 592-643 18-67 (109)
24 1y0u_A Arsenical resistance op 78.9 3.2 0.00011 34.5 5.7 56 593-660 30-85 (96)
25 3ech_A MEXR, multidrug resista 77.6 1.5 5.1E-05 39.3 3.5 52 591-644 34-85 (142)
26 3nrv_A Putative transcriptiona 77.4 2.2 7.6E-05 38.3 4.7 52 591-644 37-88 (148)
27 3cdh_A Transcriptional regulat 77.4 3.1 0.00011 37.7 5.7 50 592-643 41-90 (155)
28 2frh_A SARA, staphylococcal ac 77.0 1.9 6.5E-05 38.0 3.9 52 591-644 34-87 (127)
29 2htj_A P fimbrial regulatory p 76.8 4.6 0.00016 32.3 5.9 43 598-642 4-46 (81)
30 4hbl_A Transcriptional regulat 76.7 1.9 6.6E-05 38.9 4.0 51 592-644 39-89 (149)
31 2fbh_A Transcriptional regulat 76.1 2.7 9.1E-05 37.5 4.8 51 592-644 35-86 (146)
32 3oop_A LIN2960 protein; protei 76.1 1.6 5.6E-05 39.0 3.3 51 592-644 35-85 (143)
33 2gxg_A 146AA long hypothetical 76.0 3.4 0.00012 36.9 5.5 49 592-643 35-83 (146)
34 1xn7_A Hypothetical protein YH 76.0 2.2 7.7E-05 34.2 3.7 43 599-643 7-49 (78)
35 3r0a_A Putative transcriptiona 75.4 2.4 8.1E-05 37.3 4.1 51 591-643 23-75 (123)
36 2k02_A Ferrous iron transport 75.2 2.4 8.2E-05 34.8 3.7 43 599-643 7-49 (87)
37 2qww_A Transcriptional regulat 75.0 2.8 9.5E-05 38.0 4.6 49 592-642 39-87 (154)
38 3eco_A MEPR; mutlidrug efflux 74.8 2.4 8.4E-05 37.6 4.1 51 592-644 29-81 (139)
39 1oyi_A Double-stranded RNA-bin 74.6 3.6 0.00012 33.3 4.5 44 597-643 20-63 (82)
40 3bpv_A Transcriptional regulat 74.4 2.2 7.6E-05 37.7 3.7 50 592-643 27-76 (138)
41 1xn7_A Hypothetical protein YH 74.4 1.3 4.4E-05 35.7 1.8 43 697-747 7-49 (78)
42 1qbj_A Protein (double-strande 74.1 4.4 0.00015 32.8 5.0 57 596-659 12-71 (81)
43 3bj6_A Transcriptional regulat 73.8 3.1 0.00011 37.4 4.7 50 592-643 38-87 (152)
44 3bro_A Transcriptional regulat 73.7 3.3 0.00011 36.7 4.7 50 592-643 32-83 (141)
45 1jgs_A Multiple antibiotic res 73.2 2.6 8.8E-05 37.3 3.8 50 592-643 32-81 (138)
46 1u2w_A CADC repressor, cadmium 73.1 4.8 0.00016 35.2 5.5 50 593-644 41-90 (122)
47 3k0l_A Repressor protein; heli 72.8 2.2 7.7E-05 39.1 3.4 51 592-644 44-94 (162)
48 2fu4_A Ferric uptake regulatio 72.8 3.7 0.00013 33.0 4.4 51 591-643 14-71 (83)
49 2d1h_A ST1889, 109AA long hypo 72.7 2.9 9.9E-05 35.1 3.9 50 592-643 19-69 (109)
50 2fa5_A Transcriptional regulat 72.7 3.4 0.00012 37.7 4.7 51 591-643 46-96 (162)
51 3e6m_A MARR family transcripti 72.4 2.4 8.3E-05 38.8 3.6 51 592-644 51-101 (161)
52 1tbx_A ORF F-93, hypothetical 71.5 3.4 0.00011 34.5 4.0 51 591-643 5-59 (99)
53 3deu_A Transcriptional regulat 71.3 3.4 0.00011 38.2 4.3 51 592-644 51-102 (166)
54 2pex_A Transcriptional regulat 71.1 3.3 0.00011 37.4 4.2 50 592-643 45-94 (153)
55 3bdd_A Regulatory protein MARR 71.0 3.2 0.00011 36.8 4.0 51 591-643 28-78 (142)
56 2nyx_A Probable transcriptiona 70.9 2.8 9.5E-05 38.8 3.6 51 591-643 42-92 (168)
57 2nnn_A Probable transcriptiona 70.2 2.6 8.9E-05 37.3 3.1 50 592-643 36-85 (140)
58 2hr3_A Probable transcriptiona 70.1 3.5 0.00012 36.9 4.0 51 591-643 32-83 (147)
59 3cjn_A Transcriptional regulat 70.1 3.4 0.00012 37.7 4.0 50 592-643 50-99 (162)
60 3pqk_A Biofilm growth-associat 70.0 7.5 0.00026 32.5 5.9 60 593-659 22-81 (102)
61 3bja_A Transcriptional regulat 70.0 2.1 7.1E-05 37.9 2.4 50 592-643 31-80 (139)
62 1ku9_A Hypothetical protein MJ 69.9 5.4 0.00019 35.5 5.3 50 592-643 24-74 (152)
63 1lj9_A Transcriptional regulat 69.7 3 0.0001 37.2 3.4 50 592-643 27-76 (144)
64 2e1c_A Putative HTH-type trans 69.4 4.2 0.00014 38.0 4.5 66 572-642 8-73 (171)
65 1sfu_A 34L protein; protein/Z- 69.2 6.1 0.00021 31.3 4.6 44 599-644 20-63 (75)
66 2k02_A Ferrous iron transport 68.7 1.5 5.2E-05 36.1 1.0 44 697-748 7-50 (87)
67 2rdp_A Putative transcriptiona 68.7 3.6 0.00012 37.0 3.8 50 592-643 40-89 (150)
68 2eth_A Transcriptional regulat 68.7 3.7 0.00013 37.2 3.9 50 592-643 42-91 (154)
69 3s2w_A Transcriptional regulat 68.6 2.5 8.5E-05 38.6 2.7 51 592-644 48-98 (159)
70 3lwf_A LIN1550 protein, putati 68.5 10 0.00036 34.8 6.9 59 595-660 30-89 (159)
71 1s3j_A YUSO protein; structura 68.4 3 0.0001 37.7 3.2 51 591-643 34-84 (155)
72 3fm5_A Transcriptional regulat 67.9 4.3 0.00015 36.5 4.2 51 592-644 37-88 (150)
73 1p6r_A Penicillinase repressor 67.8 4.2 0.00014 32.6 3.6 52 591-644 6-61 (82)
74 1z91_A Organic hydroperoxide r 67.7 3.5 0.00012 36.9 3.5 51 592-644 38-88 (147)
75 4b8x_A SCO5413, possible MARR- 67.7 3.7 0.00013 37.1 3.7 51 592-644 33-85 (147)
76 3jw4_A Transcriptional regulat 67.6 2.3 7.7E-05 38.4 2.1 51 592-644 39-91 (148)
77 2bv6_A MGRA, HTH-type transcri 67.6 2.6 8.7E-05 37.6 2.5 50 592-643 35-84 (142)
78 2fbi_A Probable transcriptiona 67.4 2.8 9.7E-05 37.1 2.8 50 592-643 34-83 (142)
79 3t8r_A Staphylococcus aureus C 67.1 11 0.00038 33.9 6.7 56 597-659 16-72 (143)
80 1bby_A RAP30; average structur 67.0 11 0.00037 29.4 5.5 57 596-662 10-66 (69)
81 3f3x_A Transcriptional regulat 66.9 3.4 0.00012 36.9 3.2 50 591-643 34-83 (144)
82 1bja_A Transcription regulator 66.8 5.6 0.00019 33.2 4.1 50 590-641 12-62 (95)
83 2a61_A Transcriptional regulat 66.3 4.5 0.00015 35.9 3.9 50 592-643 31-80 (145)
84 1xmk_A Double-stranded RNA-spe 65.9 4.8 0.00017 32.4 3.5 48 594-643 11-59 (79)
85 2pn6_A ST1022, 150AA long hypo 65.8 8 0.00028 34.9 5.6 48 593-642 2-49 (150)
86 1r1u_A CZRA, repressor protein 65.6 5.4 0.00019 33.7 4.1 48 593-643 25-72 (106)
87 4aik_A Transcriptional regulat 65.4 7.7 0.00026 35.2 5.4 51 592-644 29-80 (151)
88 1p6r_A Penicillinase repressor 65.3 2.5 8.4E-05 34.0 1.7 58 695-757 12-69 (82)
89 1ub9_A Hypothetical protein PH 65.2 4.4 0.00015 33.5 3.3 48 593-642 15-62 (100)
90 3nqo_A MARR-family transcripti 65.1 4.5 0.00015 38.3 3.8 51 592-644 39-91 (189)
91 2oqg_A Possible transcriptiona 64.5 4.6 0.00016 34.4 3.5 48 593-643 20-67 (114)
92 3k69_A Putative transcription 64.3 6.8 0.00023 36.2 4.7 58 595-659 15-72 (162)
93 2heo_A Z-DNA binding protein 1 64.1 4 0.00014 31.6 2.6 45 595-641 11-56 (67)
94 2fxa_A Protease production reg 63.2 4.5 0.00015 39.1 3.4 51 592-644 46-96 (207)
95 2v79_A DNA replication protein 62.6 5.7 0.00019 35.6 3.7 52 589-642 27-83 (135)
96 2k4b_A Transcriptional regulat 62.1 4.8 0.00016 33.9 3.0 61 693-758 36-96 (99)
97 2w25_A Probable transcriptiona 62.0 7.5 0.00026 35.2 4.6 49 592-642 5-53 (150)
98 3boq_A Transcriptional regulat 62.0 3.7 0.00013 37.4 2.4 50 592-643 45-95 (160)
99 2kko_A Possible transcriptiona 61.1 4.6 0.00016 34.4 2.7 46 595-643 26-71 (108)
100 2y75_A HTH-type transcriptiona 61.0 18 0.00061 31.7 6.8 48 606-660 24-71 (129)
101 1ylf_A RRF2 family protein; st 60.8 13 0.00045 33.6 6.0 58 595-660 17-74 (149)
102 3kp7_A Transcriptional regulat 60.5 4.4 0.00015 36.5 2.7 49 591-642 35-83 (151)
103 2xub_A DNA-directed RNA polyme 60.5 4.7 0.00016 45.2 3.4 134 600-749 25-162 (534)
104 2v79_A DNA replication protein 60.5 6.2 0.00021 35.3 3.6 27 720-746 57-83 (135)
105 2obp_A Putative DNA-binding pr 60.1 7.2 0.00024 32.6 3.6 51 591-643 13-69 (96)
106 2vn2_A DNAD, chromosome replic 59.4 8.9 0.00031 33.8 4.4 53 590-644 28-85 (128)
107 2wte_A CSA3; antiviral protein 59.3 6.6 0.00022 39.0 3.9 51 591-643 149-199 (244)
108 2cfx_A HTH-type transcriptiona 58.7 9.5 0.00032 34.2 4.6 49 592-642 3-51 (144)
109 1xd7_A YWNA; structural genomi 58.4 18 0.00062 32.5 6.5 55 596-660 13-67 (145)
110 2l02_A Uncharacterized protein 58.2 14 0.00048 29.7 4.8 37 598-634 12-48 (82)
111 2ia0_A Putative HTH-type trans 58.1 8.8 0.0003 35.8 4.4 52 589-642 12-63 (171)
112 1i1g_A Transcriptional regulat 57.1 7.9 0.00027 34.4 3.8 48 593-642 3-50 (141)
113 3r4k_A Transcriptional regulat 56.7 9 0.00031 38.4 4.5 56 597-660 9-65 (260)
114 2xrn_A HTH-type transcriptiona 56.1 12 0.00043 36.8 5.3 56 597-660 9-65 (241)
115 3ulq_B Transcriptional regulat 55.4 16 0.00055 29.9 5.1 42 590-633 28-69 (90)
116 2cg4_A Regulatory protein ASNC 55.4 11 0.00036 34.2 4.3 49 592-642 6-54 (152)
117 2cyy_A Putative HTH-type trans 54.8 11 0.00039 34.0 4.5 49 592-642 5-53 (151)
118 2dbb_A Putative HTH-type trans 54.6 11 0.00038 34.0 4.4 49 592-642 7-55 (151)
119 1fse_A GERE; helix-turn-helix 54.6 19 0.00065 27.6 5.2 41 591-633 11-51 (74)
120 4fx0_A Probable transcriptiona 54.3 14 0.00049 33.2 5.0 47 592-640 31-82 (148)
121 1tbx_A ORF F-93, hypothetical 53.9 6.4 0.00022 32.6 2.4 54 697-754 13-66 (99)
122 2jsc_A Transcriptional regulat 53.5 12 0.00042 32.2 4.3 49 593-644 20-68 (118)
123 1sd4_A Penicillinase repressor 53.4 7.5 0.00026 33.7 2.9 51 591-643 7-61 (126)
124 1hsj_A Fusion protein consisti 53.1 10 0.00035 41.5 4.6 52 591-644 401-454 (487)
125 2p5k_A Arginine repressor; DNA 53.0 16 0.00053 27.3 4.3 37 596-632 7-48 (64)
126 1r1t_A Transcriptional repress 52.8 16 0.00055 31.8 4.9 47 594-643 46-92 (122)
127 2g9w_A Conserved hypothetical 52.7 15 0.0005 32.7 4.8 50 592-643 7-61 (138)
128 2p5v_A Transcriptional regulat 52.3 13 0.00046 33.9 4.6 49 592-642 8-56 (162)
129 1p4x_A Staphylococcal accessor 52.1 13 0.00043 37.1 4.6 52 591-644 155-208 (250)
130 2fu4_A Ferric uptake regulatio 52.0 10 0.00036 30.2 3.3 58 696-756 21-80 (83)
131 1sd4_A Penicillinase repressor 52.0 4.6 0.00016 35.2 1.2 58 695-757 13-70 (126)
132 3u2r_A Regulatory protein MARR 51.7 5.2 0.00018 36.8 1.6 50 592-643 44-95 (168)
133 1je8_A Nitrate/nitrite respons 51.6 21 0.00071 28.5 5.1 41 591-633 21-61 (82)
134 1okr_A MECI, methicillin resis 49.0 8.7 0.0003 33.1 2.6 51 591-643 7-61 (123)
135 3f6o_A Probable transcriptiona 48.6 13 0.00045 32.0 3.7 48 593-643 17-64 (118)
136 2lkp_A Transcriptional regulat 48.4 17 0.00059 31.1 4.4 47 593-642 31-77 (119)
137 1mkm_A ICLR transcriptional re 48.3 21 0.0007 35.4 5.5 54 597-659 11-65 (249)
138 3i4p_A Transcriptional regulat 48.1 24 0.00082 32.3 5.6 46 595-642 4-49 (162)
139 3mq0_A Transcriptional repress 47.5 12 0.00042 37.7 3.8 44 598-643 34-78 (275)
140 2pg4_A Uncharacterized protein 46.7 14 0.00047 30.3 3.3 45 595-641 16-62 (95)
141 2qlz_A Transcription factor PF 46.6 9.1 0.00031 37.7 2.5 47 593-642 11-57 (232)
142 2yu3_A DNA-directed RNA polyme 45.7 21 0.00071 29.7 4.1 50 591-642 34-85 (95)
143 3c57_A Two component transcrip 45.7 23 0.00079 29.2 4.6 41 591-633 27-67 (95)
144 1x3u_A Transcriptional regulat 45.7 28 0.00095 27.1 4.9 40 592-633 17-56 (79)
145 1q1h_A TFE, transcription fact 43.2 19 0.00063 30.4 3.7 43 599-643 23-66 (110)
146 2o0y_A Transcriptional regulat 42.9 22 0.00076 35.4 4.8 44 598-643 27-71 (260)
147 2l01_A Uncharacterized protein 42.2 34 0.0012 27.1 4.6 38 597-634 13-51 (77)
148 2zkz_A Transcriptional repress 42.2 19 0.00066 29.8 3.6 47 593-642 26-72 (99)
149 2htj_A P fimbrial regulatory p 42.1 13 0.00046 29.5 2.5 43 697-747 5-47 (81)
150 3f6v_A Possible transcriptiona 41.9 18 0.00061 32.9 3.6 48 593-643 57-104 (151)
151 2k4b_A Transcriptional regulat 41.8 5.2 0.00018 33.7 -0.1 52 591-644 32-87 (99)
152 2vn2_A DNAD, chromosome replic 41.7 13 0.00045 32.7 2.5 26 723-748 60-85 (128)
153 2hzt_A Putative HTH-type trans 40.6 32 0.0011 28.8 4.8 46 595-643 15-61 (107)
154 1qgp_A Protein (double strande 40.3 5.8 0.0002 31.6 -0.1 50 696-753 18-70 (77)
155 2ia2_A Putative transcriptiona 40.1 28 0.00094 34.8 5.0 54 597-660 24-78 (265)
156 2g7u_A Transcriptional regulat 39.5 32 0.0011 34.1 5.3 54 597-660 17-71 (257)
157 2p7v_B Sigma-70, RNA polymeras 39.5 47 0.0016 25.1 5.2 41 592-632 6-49 (68)
158 2jt1_A PEFI protein; solution 39.4 5.3 0.00018 32.0 -0.4 39 705-751 23-61 (77)
159 3b73_A PHIH1 repressor-like pr 39.2 23 0.00079 30.3 3.6 50 592-643 11-62 (111)
160 2lnb_A Z-DNA-binding protein 1 38.6 19 0.00066 28.5 2.6 37 597-633 22-59 (80)
161 3r0a_A Putative transcriptiona 38.4 12 0.0004 32.7 1.7 48 692-747 26-75 (123)
162 1uly_A Hypothetical protein PH 38.3 39 0.0013 31.9 5.5 49 592-643 18-66 (192)
163 2qvo_A Uncharacterized protein 38.0 17 0.00058 29.8 2.6 47 592-640 10-60 (95)
164 2x4h_A Hypothetical protein SS 37.9 42 0.0014 29.3 5.4 50 591-642 10-63 (139)
165 2fbk_A Transcriptional regulat 37.4 8.5 0.00029 35.9 0.6 50 592-643 67-119 (181)
166 1z7u_A Hypothetical protein EF 37.3 21 0.00071 30.4 3.1 47 594-643 22-69 (112)
167 3f8b_A Transcriptional regulat 37.3 27 0.00092 30.0 3.8 58 689-747 9-66 (116)
168 1on2_A Transcriptional regulat 37.0 21 0.00071 31.6 3.2 42 600-643 14-55 (142)
169 1qbj_A Protein (double-strande 36.5 10 0.00034 30.6 0.8 50 696-753 14-66 (81)
170 2x48_A CAG38821; archeal virus 36.4 85 0.0029 22.3 6.0 24 607-630 30-53 (55)
171 2g9w_A Conserved hypothetical 36.2 28 0.00097 30.7 3.9 58 694-756 11-69 (138)
172 1tty_A Sigma-A, RNA polymerase 36.2 48 0.0016 26.6 5.0 40 593-632 20-62 (87)
173 2jpc_A SSRB; DNA binding prote 35.6 33 0.0011 25.1 3.6 35 597-633 4-38 (61)
174 4a5n_A Uncharacterized HTH-typ 35.1 42 0.0014 29.6 4.8 46 595-643 27-73 (131)
175 2rnj_A Response regulator prot 34.7 25 0.00085 28.6 3.0 40 592-633 30-69 (91)
176 4a0z_A Transcription factor FA 34.7 33 0.0011 32.4 4.3 40 595-634 13-52 (190)
177 3cuo_A Uncharacterized HTH-typ 34.6 15 0.00051 30.1 1.7 54 693-754 25-78 (99)
178 3df8_A Possible HXLR family tr 34.5 41 0.0014 28.5 4.5 47 594-643 27-76 (111)
179 1p4w_A RCSB; solution structur 34.4 37 0.0013 28.3 4.1 41 591-633 34-74 (99)
180 1okr_A MECI, methicillin resis 34.0 11 0.00038 32.5 0.7 56 697-757 15-70 (123)
181 2fsw_A PG_0823 protein; alpha- 33.3 37 0.0013 28.4 4.0 44 597-643 28-72 (107)
182 2f2e_A PA1607; transcription f 33.1 47 0.0016 29.7 4.9 47 595-644 25-71 (146)
183 1tc3_C Protein (TC3 transposas 32.8 50 0.0017 22.4 4.1 32 598-631 13-44 (51)
184 3t72_q RNA polymerase sigma fa 32.3 54 0.0019 27.3 4.8 39 592-630 20-61 (99)
185 1ku3_A Sigma factor SIGA; heli 32.1 62 0.0021 24.8 4.9 40 593-632 12-54 (73)
186 1yyv_A Putative transcriptiona 31.4 49 0.0017 29.0 4.6 48 593-643 34-82 (131)
187 3kp7_A Transcriptional regulat 31.2 9.2 0.00032 34.3 -0.3 51 694-753 40-94 (151)
188 2qlz_A Transcription factor PF 30.6 37 0.0013 33.2 4.0 45 596-643 167-211 (232)
189 3to7_A Histone acetyltransfera 30.1 41 0.0014 33.4 4.1 29 604-632 204-232 (276)
190 3i4p_A Transcriptional regulat 28.1 20 0.00068 32.8 1.4 47 693-747 4-50 (162)
191 2frh_A SARA, staphylococcal ac 28.1 27 0.00092 30.3 2.3 39 705-751 52-92 (127)
192 2p4w_A Transcriptional regulat 27.1 44 0.0015 31.9 3.7 48 593-643 14-61 (202)
193 3hug_A RNA polymerase sigma fa 27.1 79 0.0027 25.5 4.9 39 592-632 38-77 (92)
194 2o8x_A Probable RNA polymerase 26.4 87 0.003 23.3 4.8 39 592-632 16-55 (70)
195 1oks_A RNA polymerase alpha su 26.3 52 0.0018 23.7 2.9 41 441-481 4-44 (56)
196 2qww_A Transcriptional regulat 24.8 20 0.00068 32.0 0.8 45 694-746 43-87 (154)
197 3cdh_A Transcriptional regulat 24.6 31 0.0011 30.8 2.0 48 693-748 44-91 (155)
198 2eth_A Transcriptional regulat 24.6 29 0.00099 31.0 1.9 46 694-747 46-91 (154)
199 3bja_A Transcriptional regulat 24.4 23 0.0008 30.7 1.2 48 697-752 38-87 (139)
200 2ozu_A Histone acetyltransfera 24.0 53 0.0018 32.8 3.7 28 605-632 211-238 (284)
201 2dk5_A DNA-directed RNA polyme 23.7 50 0.0017 27.1 2.9 35 704-746 34-68 (91)
202 3jth_A Transcription activator 23.4 37 0.0013 27.7 2.2 52 695-755 26-77 (98)
203 1nkl_A NK-lysin; saposin fold, 23.3 2.3E+02 0.0079 22.0 6.8 58 391-452 7-65 (78)
204 1xma_A Predicted transcription 23.3 40 0.0014 30.3 2.5 57 691-748 40-96 (145)
205 1sfx_A Conserved hypothetical 23.3 24 0.00081 29.1 0.9 47 694-748 22-68 (109)
206 2ou2_A Histone acetyltransfera 23.2 68 0.0023 32.0 4.2 26 608-633 212-237 (280)
207 2hzt_A Putative HTH-type trans 22.8 57 0.002 27.2 3.3 51 697-756 19-72 (107)
208 2pq8_A Probable histone acetyl 22.3 52 0.0018 32.8 3.2 35 598-632 197-232 (278)
209 1bia_A BIRA bifunctional prote 22.3 84 0.0029 32.2 5.1 41 594-634 5-45 (321)
210 3tgn_A ADC operon repressor AD 21.9 27 0.00093 30.7 1.1 43 697-748 43-85 (146)
211 3hsr_A HTH-type transcriptiona 21.8 20 0.00068 31.6 0.1 47 694-748 38-84 (140)
212 2gxg_A 146AA long hypothetical 20.9 59 0.002 28.3 3.1 45 695-748 40-84 (146)
213 1oyi_A Double-stranded RNA-bin 20.8 45 0.0015 26.8 2.0 47 697-752 22-68 (82)
214 3hrs_A Metalloregulator SCAR; 20.6 96 0.0033 29.6 4.8 44 598-643 10-53 (214)
215 1r7j_A Conserved hypothetical 20.3 1.3E+02 0.0046 24.5 5.0 44 596-643 10-53 (95)
216 1jgs_A Multiple antibiotic res 20.2 33 0.0011 29.7 1.3 43 697-747 39-81 (138)
217 1i1g_A Transcriptional regulat 20.2 27 0.00094 30.8 0.7 47 694-748 6-52 (141)
218 2pg4_A Uncharacterized protein 20.1 20 0.00069 29.3 -0.2 45 701-753 24-70 (95)
219 3cuq_B Vacuolar protein-sortin 20.0 2E+02 0.0068 27.6 6.9 49 593-643 153-201 (218)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=3.5e-131 Score=1165.88 Aligned_cols=707 Identities=32% Similarity=0.586 Sum_probs=652.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCC-----------------------CCCCcHHHHHH
Q 004376 11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQK-----------------------PPHDYSQQLYD 67 (758)
Q Consensus 11 f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~-----------------------~~~~~~e~LY~ 67 (758)
|+++|..|++||++| +.+ .+++..+||++|++||++|+++ +|..+|+.||+
T Consensus 1 f~~~W~~L~~ai~~I---~~~---~~~s~~~~~~LY~~vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~ 74 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQV---YTR---QSMAKSRYMELYTHVYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYK 74 (760)
T ss_dssp CHHHHHHHHHHHHHH---TTC---CCCCHHHHHHHHHHHHHHTCCC----------------------------TTHHHH
T ss_pred ChhhHHHHHHHHHHH---Hhc---CCCCHHHHHHHHHHHHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHH
Confidence 689999999999996 433 2588999999999999999986 13447899999
Q ss_pred HHHHHHHHHHHhcccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCC------CCcHHHHHHHHHHH
Q 004376 68 KYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRD 141 (758)
Q Consensus 68 ~l~~~i~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~------~~~i~~l~l~~f~~ 141 (758)
++++.+.+|+...+. .+....++.||..|..+|.+|+.++.+|+++|+||||+||++.+ .++|+++|+.+||+
T Consensus 75 ~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~ 153 (760)
T 1ldj_A 75 RLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRD 153 (760)
T ss_dssp HHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHH
Confidence 999999999987543 34455678899999999999999999999999999999999875 78999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHHhccC---------cccccHHHHHHHHHHHHHHHHHHHHH
Q 004376 142 LVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKAS 212 (758)
Q Consensus 142 ~v~~~l~~~l~~~ll~~I~~~R~g~~i~~~~l~~~i~~l~~l~~~---------~~~~Y~~~FE~~~L~~t~~yY~~~~~ 212 (758)
+||.++++++.++++++|+++|.|+.+|+.+|+++++||+.||.+ .+.+|.+.||++||++|.+||+.+++
T Consensus 154 ~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~ 233 (760)
T 1ldj_A 154 CLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTREST 233 (760)
T ss_dssp HHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999743 36899999999999999999999999
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHh
Q 004376 213 NWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRL 292 (758)
Q Consensus 213 ~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L 292 (758)
.|+.+.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|.+.|+ +|+..||++++.+||++||+|
T Consensus 234 ~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L 309 (760)
T 1ldj_A 234 EFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNL 309 (760)
T ss_dssp HHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999885 589999999999999999999
Q ss_pred hccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 004376 293 FSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKS 372 (758)
Q Consensus 293 ~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~ 372 (758)
|+++++|++.++..|++||.+.|.+++....+.. ..++..||+.|+++|++|+.++..||++|+.|..+
T Consensus 310 ~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~-----------~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~a 378 (760)
T 1ldj_A 310 VSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA-----------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAA 378 (760)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG-----------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHH
T ss_pred hCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccc-----------ccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 9999999999999999999999999997643110 24688999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC------CCCCChHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhccccChhHHHHHHHHHHHHH
Q 004376 373 LKEAFEVFCNKG------VAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 446 (758)
Q Consensus 373 l~~af~~~~n~~------~~~~~~~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~R 446 (758)
+++||+.|+|.+ ....++||+||+|||.+||+|. ++.++++++..|++++.||+|+++||+|+.+|+++||+|
T Consensus 379 l~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakR 457 (760)
T 1ldj_A 379 LDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKR 457 (760)
T ss_dssp HHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhCCC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999986 2236889999999999999865 456789999999999999999999999999999999999
Q ss_pred hcCCCCCChHHHHHHHHHHHHhcCchhhHhhhhhcccccccccccccccchhHhhHHHHHHHHHHHhcCCCCCCCcceEE
Q 004376 447 LLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTV 526 (758)
Q Consensus 447 LL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~~~~~~~~~~~~~~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~ 526 (758)
||.+++.+.+.|+.||++||.+||.+||++|++|| +|+..|++++..|++++.++ ...+++|+|
T Consensus 458 LL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~--------------~Di~~S~~l~~~f~~~~~~~--~~~~~~~~v 521 (760)
T 1ldj_A 458 LVHQNSASDDAEASMISKLKQACGFEYTSKLQRMF--------------QDIGVSKDLNEQFKKHLTNS--EPLDLDFSI 521 (760)
T ss_dssp HHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTTT--CCCSSEEEE
T ss_pred hcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhcc--cCCCCCeeE
Confidence 99999999999999999999999999999999999 99999999999999987651 234789999
Q ss_pred EEeecCCCCCCCCCCccCCHhHHHHHHHHHHHHhhcCCCceEEeccCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC
Q 004376 527 TVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS 606 (758)
Q Consensus 527 ~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~ 606 (758)
.|||+++||..+..++.||++|+.+++.|++||..+|+||+|.|.+++|+|+|+++|++++++|+||++||+||++||+.
T Consensus 522 ~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~ 601 (760)
T 1ldj_A 522 QVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTE 601 (760)
T ss_dssp EEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSS
T ss_pred EecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCC
Confidence 99999999998878899999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC-----CCCCCCCCCcEEeccCCCCCCceeeccCCCch----h
Q 004376 607 DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTDHFEFNSKFTDKMRRIKIPLPPVD----E 677 (758)
Q Consensus 607 ~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~-----~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~----e 677 (758)
+++|++||++.||++.++++++|.+|+ +.+||.+.| +++.+.+++.|.+|.+|++++.||+|+.+... |
T Consensus 602 ~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~~f~lN~~F~~k~~ri~i~~~~~~e~~~e 679 (760)
T 1ldj_A 602 DAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQE 679 (760)
T ss_dssp SEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTCEEEECSSCCCSSSSBCCCCCCTTHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCCEEEeeccccCCceEEEecCccccccchh
Confidence 999999999999999999999999997 578998554 67889999999999999999999999865442 3
Q ss_pred hhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 004376 678 KKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 757 (758)
Q Consensus 678 ~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 757 (758)
...+.+.+++||+..|+||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||.||+||||+|+++|+++|+|+
T Consensus 680 ~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~Yl 759 (760)
T 1ldj_A 680 QETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYL 759 (760)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEEC
T ss_pred hhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 004376 758 A 758 (758)
Q Consensus 758 a 758 (758)
|
T Consensus 760 A 760 (760)
T 1ldj_A 760 A 760 (760)
T ss_dssp C
T ss_pred C
Confidence 8
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=3.1e-128 Score=1140.55 Aligned_cols=695 Identities=35% Similarity=0.644 Sum_probs=648.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHhcccchhhc
Q 004376 8 TIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIRE 87 (758)
Q Consensus 8 ~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~i~~~l~~~v~~~l~~ 87 (758)
..+|+++|..|++||+. |+++.+. +++ |+++|+.||++|+++ +|+.||+++++.+.+|+...+ +.+..
T Consensus 56 ~~~~e~~W~~L~~ai~~---I~~~~~~-~~s---~e~LY~~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~~ 123 (759)
T 2hye_C 56 DNYTQDTWRKLHEAVRA---VQSSTSI-RYN---LEELYQAVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFRE 123 (759)
T ss_dssp CCTTTTHHHHHHHHHHT---TSTTCCC-SSC---HHHHHHHHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHTS
T ss_pred cchHHHHHHHHHHHHHH---HHhCCCC-CCC---HHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 35679999999999998 5556543 355 999999999999998 799999999999999998753 44433
Q ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCC-CCcHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHH
Q 004376 88 --KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLIDQE 162 (758)
Q Consensus 88 --~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~~--l~~~l~~~ll~~I~~~ 162 (758)
.+++.||..|...|.+|+.++.+|+++|+||||+|+.+++ .++|+++|+.+|+++||.+ +++++.++++++|+++
T Consensus 124 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~e 203 (759)
T 2hye_C 124 DSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERE 203 (759)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhCCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence 2345899999999999999999999999999999999876 7899999999999999996 9999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcccc
Q 004376 163 REGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYL 242 (758)
Q Consensus 163 R~g~~i~~~~l~~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l 242 (758)
|+|+.+|+.+++++++||+.| ++|.+.||++||++|.+||+.+++.|+.+.++++|+++|+.++++|.+||..||
T Consensus 204 R~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL 278 (759)
T 2hye_C 204 RSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYL 278 (759)
T ss_dssp TTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTS
T ss_pred hcCCCCcHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999987 589999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 004376 243 HSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 322 (758)
Q Consensus 243 ~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~ 322 (758)
+++|.++|.++|+++||.+|++.|++ +|+..||.+++.++|++||+|+++++++++.++..|++||++.|.+++.+.
T Consensus 279 ~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~ 355 (759)
T 2hye_C 279 DHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINP 355 (759)
T ss_dssp CTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcCCHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCc
Confidence 99999999999999999999999986 489999999999999999999999999999999999999999999998542
Q ss_pred HHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHh
Q 004376 323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNIL 402 (758)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~l 402 (758)
. .+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+. .++||+||+|||.+|
T Consensus 356 ~----------------~~~~~V~~ll~~~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~L 417 (759)
T 2hye_C 356 E----------------KDKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKL 417 (759)
T ss_dssp G----------------GTTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHH
T ss_pred c----------------cHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHh
Confidence 1 2457999999999999999999999999999999999999999863 578999999999999
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhcCchhhHhhhhhcc
Q 004376 403 KKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVS 482 (758)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~~ 482 (758)
|+|. ++.+++|++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++||.+||.+||++|++||
T Consensus 418 k~~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~- 495 (759)
T 2hye_C 418 RAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMF- 495 (759)
T ss_dssp SSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHH-
T ss_pred ccCC-CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHH-
Confidence 9864 45678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhHhhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCCHhHHHHHHHHHHHHhhc
Q 004376 483 FGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTK 562 (758)
Q Consensus 483 ~~~~~~~~~~~~~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~~~~~~lP~~l~~~~~~f~~~Y~~~ 562 (758)
+|+..|++++..|++++.+.+ ...+++|+|.|||+++||.++..++.+|++|+.+++.|++||..+
T Consensus 496 -------------~Di~~S~~l~~~f~~~~~~~~-~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~ 561 (759)
T 2hye_C 496 -------------KDMELSKDIMVHFKQHMQNQS-DSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGK 561 (759)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTTC-CCCCCEEEEEEEETTTSCCCCCCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred -------------HHHHHHHHHHHHHHHHHhccc-CCCCCceEEEEeCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999876432 224689999999999999998888999999999999999999999
Q ss_pred CCCceEEeccCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 563 TKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 563 ~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
|+||+|.|.+++|+|+|+++|++++++++||++||+||++||+.+++|++||++.||++.++|+++|++|+++|.+||.+
T Consensus 562 ~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~ 641 (759)
T 2hye_C 562 HSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIK 641 (759)
T ss_dssp SCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEE
T ss_pred CCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeec
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999878999999
Q ss_pred CCCCCCCCCCCcEEeccCCCCCCceeeccCCCc----hhhhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHH
Q 004376 643 EPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPV----DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVE 718 (758)
Q Consensus 643 ~~~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~----~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~ 718 (758)
.|+++.+.+++.|.+|.+|+++..||+|+.+.. +|...+.+.+++||++.|+||||||||+||+|+|++|+.+|.+
T Consensus 642 ~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ 721 (759)
T 2hye_C 642 SPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYN 721 (759)
T ss_dssp TTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHH
T ss_pred CCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999986433 3445577889999999999999999999999999999999999
Q ss_pred HhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 004376 719 QLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758 (758)
Q Consensus 719 ~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 758 (758)
+++ |+|++.+||+|||.||+||||+|+++|+++|+|+|
T Consensus 722 ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 722 QLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HcC--CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 997 99999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=3.4e-77 Score=650.12 Aligned_cols=357 Identities=32% Similarity=0.493 Sum_probs=324.9
Q ss_pred CCChHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Q 004376 387 GSSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKL 465 (758)
Q Consensus 387 ~~~~~e~La~y~d~~l~~~~-~~~~~~~~~~~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~~~~~~~E~~~i~~L 465 (758)
..+.||+||+|||.+||+|. +++.++++++..|++++.||+|+++||+|+.+|+++||+|||.+++.+.|.|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 35789999999999999863 24568999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCc--hhhHhhhhhcccccccccccccccchhHhhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCc
Q 004376 466 KQQCGG--QFTSKMEGMVSFGDYACEFKYLKVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYK-SFDL 542 (758)
Q Consensus 466 k~~~G~--~~~~kl~~M~~~~~~~~~~~~~~~~D~~~S~~~~~~f~~~~~~~~~~~~~~~~~~~vLt~~~WP~~~-~~~~ 542 (758)
+ +||. +||++|++|| +|+..|++++..|++++.+.+....+++|+|.|||+++||.++ ..++
T Consensus 83 K-~cG~~~~ft~kle~M~--------------kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~ 147 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMF--------------QDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFV 147 (382)
T ss_dssp H-HTTCCHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCC
T ss_pred H-HcCCchhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCc
Confidence 9 9996 9999999999 9999999999999998765432224689999999999999874 5689
Q ss_pred cCCHhHHHHHHHHHHHHhhcCCCceEEeccCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC--CCccHHHHHHHhCC
Q 004376 543 NLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS--DRLSYSEIMTQLNL 620 (758)
Q Consensus 543 ~lP~~l~~~~~~f~~~Y~~~~~~R~L~w~~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~--~~~t~~ei~~~t~i 620 (758)
.||++|+.+++.|++||..+|+||+|.|.|++|+|+|++++++++++|.||++||+||++||+. +++|++||++.||+
T Consensus 148 ~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i 227 (382)
T 3dpl_C 148 SLPTELEDLIPEVEEFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATEL 227 (382)
T ss_dssp CCCHHHHTTHHHHHHHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999998999999999999999999985 79999999999999
Q ss_pred CHHHHHHHHHHhhhc---cccccccCCCC---CCCCCCCcEEeccCCCCC-----CceeeccCCC------chhhhhHHH
Q 004376 621 SDDDVVRLLHSLSCA---KYKILNKEPNT---KTISPTDHFEFNSKFTDK-----MRRIKIPLPP------VDEKKKVIE 683 (758)
Q Consensus 621 ~~~~l~~~L~~L~~~---k~~iL~~~~~~---~~i~~~~~~~~N~~f~~~-----~~~i~i~~~~------~~e~~~~~~ 683 (758)
+.++|+++|++|++. |++||.+.|.+ +.+.++|.|.+|.+|++. .++++|+.++ ..+.+++.+
T Consensus 228 ~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~ 307 (382)
T 3dpl_C 228 PDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENE 307 (382)
T ss_dssp CHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHH
Confidence 999999999999863 56899988753 568889999999999962 2567776542 123455778
Q ss_pred hHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 004376 684 DVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758 (758)
Q Consensus 684 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 758 (758)
.+++||++.||||||||||+||+|+|++|+.+|+++++++|.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 308 ~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 308 GIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred HHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-65 Score=564.52 Aligned_cols=367 Identities=26% Similarity=0.489 Sum_probs=329.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHhcccchhhcc
Q 004376 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREK 88 (758)
Q Consensus 9 ~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~i~~~l~~~v~~~l~~~ 88 (758)
.+|+++|..|++||++| +++.+. ++| ||++|+.||++|+++ +|++||+++++.+.+|+...+.+.+...
T Consensus 28 ~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~l~~~ 96 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVLNS 96 (410)
T ss_dssp HHHHHHHHHHHHHHHHH---HTTCCT-TCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHH---HhcCCC-CCC---HHHHHHHHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999985 455543 355 999999999999998 8999999999999999986666777666
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCCCCcHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhcCC
Q 004376 89 HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGE 166 (758)
Q Consensus 89 ~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~--~l~~~l~~~ll~~I~~~R~g~ 166 (758)
.++.||+.|...|++|+.++.+|+++|+||||+|+.+++.++|+++|+.+|+++||. ++++++.++++.+|+++|.|+
T Consensus 97 ~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge 176 (410)
T 4ap2_B 97 LNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGE 176 (410)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHTTCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCC
Confidence 667899999999999999999999999999999999999999999999999999997 699999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHccccCCCc
Q 004376 167 QIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSS 246 (758)
Q Consensus 167 ~i~~~~l~~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t 246 (758)
.+|+.+|+++++||+.||.+.+.+|.+.||++||++|.+||+.+++.|+.+.++++||++|+.++++|.+||..||+++|
T Consensus 177 ~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT 256 (410)
T 4ap2_B 177 VVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKST 256 (410)
T ss_dssp CCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHh
Q 004376 247 EPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAA 326 (758)
Q Consensus 247 ~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~~~ 326 (758)
.++|.++|+++||.+|.+.|++++++||..||++++.+||++||+||+++++|++.+++.|++||++.|.+++.....
T Consensus 257 ~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~-- 334 (410)
T 4ap2_B 257 EEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE-- 334 (410)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcccc--
Confidence 999999999999999999999888899999999999999999999999999999999999999999999999976532
Q ss_pred hhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHh
Q 004376 327 SNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNIL 402 (758)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~~~~~~~e~La~y~d~~l 402 (758)
..+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+. +.||+||+|||..-
T Consensus 335 -----------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~AF~~fiN~~~---~spElla~y~D~~~ 396 (410)
T 4ap2_B 335 -----------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLNS---RSPEYLAENLYFQS 396 (410)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHC------------------
T ss_pred -----------ccChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCC---CCHHHHHHHccCcc
Confidence 235889999999999999999999999999999999999999999984 67899999999754
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=2.1e-63 Score=541.66 Aligned_cols=354 Identities=25% Similarity=0.510 Sum_probs=281.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHhcccchhh
Q 004376 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIR 86 (758)
Q Consensus 7 ~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~i~~~l~~~v~~~l~ 86 (758)
++.+|+++|..|++||++| +++.+. ++| ||++|+.||++|+++ +|+.||+++++.+.+|+...+.+.+.
T Consensus 9 ~~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~e~LY~~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~~~ 77 (364)
T 4eoz_B 9 DEKYVNSIWDLLKNAIQEI---QRKNNS-GLS---FEELYRNAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVL 77 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HTTCGG-GCC---HHHHHHHHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHH---HhcCCC-CCC---HHHHHHHHHHHHhhh----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999985 445443 344 999999999999998 89999999999999999865667776
Q ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCCCCcHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHhc
Q 004376 87 EKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQERE 164 (758)
Q Consensus 87 ~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~~~~i~~l~l~~f~~~v~~--~l~~~l~~~ll~~I~~~R~ 164 (758)
...++.||+.|...|++|+.++.+|+++|+||||+|+++++.++|+++|+.+|+++||. ++++++.++++.+|+++|.
T Consensus 78 ~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~ 157 (364)
T 4eoz_B 78 NSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERK 157 (364)
T ss_dssp TTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTGGGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhC
Confidence 66667799999999999999999999999999999999999999999999999999997 7999999999999999999
Q ss_pred CCccCHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHccccCC
Q 004376 165 GEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHS 244 (758)
Q Consensus 165 g~~i~~~~l~~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~ 244 (758)
|+.+|+.+|+++++||+.+|.+.+.+|.+.||++||++|.+||+.+++.|+.+.++++||++|+.++++|.+||..||++
T Consensus 158 Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~ 237 (364)
T 4eoz_B 158 GEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDK 237 (364)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHH
Q 004376 245 SSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAED 324 (758)
Q Consensus 245 ~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~~~ 324 (758)
+|.++|.++|+++||.+|.+.|++++++|+..||++++.+||++||+||+++++|++.+++.|++||++.|.+++.+...
T Consensus 238 ~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~ 317 (364)
T 4eoz_B 238 STEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE 317 (364)
T ss_dssp GGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC---------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCCHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999976532
Q ss_pred HhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcC
Q 004376 325 AASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 384 (758)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~ 384 (758)
..+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 318 -------------~~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 318 -------------GKNPVDYRQGLDDLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ------------------------------------------------------------
T ss_pred -------------cCChHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCc
Confidence 23578999999999999999999999999999999999999999964
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=1.2e-60 Score=524.45 Aligned_cols=357 Identities=20% Similarity=0.461 Sum_probs=323.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHhcccch
Q 004376 5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPS 84 (758)
Q Consensus 5 ~~~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~i~~~l~~~v~~~ 84 (758)
.+++.+|+++|..|++||++|.. + .++++.+||++|+.||++|++++ .+|+.||+++++.+++|+...+.+.
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~---~---~~~~~~s~e~LY~~vy~lc~~~~--~~~~~LY~~l~~~~~~~l~~~~~~~ 80 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR---Q---ESVTKQQWFDLFSDVHAVCLWDD--KGSSKIHQALKEDILEFIKQAQARV 80 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH---T---CCCCHHHHHHHHHHHHHHHHHCT--THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHHHHh---C---CCCChHHHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999653 3 25888899999999999999852 3799999999999999998755433
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcC--------CCCcHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 004376 85 IREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR--------SLPPLNEVGLTCFRDLVYTELNGKVRDAVI 156 (758)
Q Consensus 85 l~~~~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~--------~~~~i~~l~l~~f~~~v~~~l~~~l~~~ll 156 (758)
....+++.+|..|..+|.+|+.++.+|+++|+||||+||.+. +.++|+++|+.+|+++||.++++++.++++
T Consensus 81 ~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll 160 (391)
T 2wzk_A 81 LSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTLLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAM 160 (391)
T ss_dssp HTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTSTTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345789999999999999999999999999999999653 356999999999999999999999999999
Q ss_pred HHHHHHhcCCccCHHHHHHHHHHHHHhccC---cccccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 004376 157 TLIDQEREGEQIDRALLKNVLDIFVEIGMG---QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKR 233 (758)
Q Consensus 157 ~~I~~~R~g~~i~~~~l~~~i~~l~~l~~~---~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~e 233 (758)
.+|+++|.|+.+|+.+++++++||+.||.+ .+.+|.+.||++||++|.+||+.+++.|+.+.++++||++|+.+|++
T Consensus 161 ~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~e 240 (391)
T 2wzk_A 161 KLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKE 240 (391)
T ss_dssp HHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999863 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHccccC----CCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHhhccCCCChhhHHHHHHH
Q 004376 234 EKDRVSHYLH----SSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQ 309 (758)
Q Consensus 234 E~~r~~~~l~----~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L~~~~~~~l~~l~~~~~~ 309 (758)
|.+||+.||+ ++|.++|.++|+++||.+|.+.|++ |+..||++++.+||++||+||+++++|++.++..|++
T Consensus 241 E~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~ 316 (391)
T 2wzk_A 241 EEKRALRYLETRRECNSVEALMECCVNALVTSFKETILA----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEE 316 (391)
T ss_dssp HHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHHT----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHH
T ss_pred HHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHH
Confidence 9999999999 9999999999999999999999975 7999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcC
Q 004376 310 HVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG 384 (758)
Q Consensus 310 ~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~ 384 (758)
||++.|.+++....+. ...+|..||+.|+++|++|+.++..||++|+.|..++++||+.|+|.+
T Consensus 317 ~I~~~G~~~v~~~~~~-----------~~~~~~~~V~~LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~ 380 (391)
T 2wzk_A 317 HIISAGLADMVAAAET-----------ITTDSEKYREQLDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDA 380 (391)
T ss_dssp HHHHHHHHHHHHHGGG-----------TTTCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-----------ccCCHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc
Confidence 9999999997643211 134688999999999999999999999999999999999999999976
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=3.3e-60 Score=514.62 Aligned_cols=344 Identities=25% Similarity=0.530 Sum_probs=314.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHhcccchhh
Q 004376 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIR 86 (758)
Q Consensus 7 ~~~~f~~~W~~l~~ai~~i~~il~~~~~~~~s~~~y~~lY~~vy~lc~~~~~~~~~e~LY~~l~~~i~~~l~~~v~~~l~ 86 (758)
+..+|+++|..|++||.+| +++.+. ++| ||++|+.||++|+++ +|++||+++++.+.+|+...+.+...
T Consensus 6 ~~~~~~~~W~~L~~ai~~I---~~~~~~-~~s---~eeLY~~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~~ 74 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAI---QNSTSI-KYN---LEELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFRE 74 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHH---HTTCCC-CSC---HHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGGC
T ss_pred CHHHHHHHHHHHHHHHHHH---HhCCCC-CCC---HHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3469999999999999986 445543 355 999999999999998 89999999999999999876544433
Q ss_pred cc-CcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcCC-CCcHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH
Q 004376 87 EK-HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQE 162 (758)
Q Consensus 87 ~~-~~~~~L~~~~~~W~~~~~~~~~l~~vf~YLdr~yv~~~~-~~~i~~l~l~~f~~~v~~--~l~~~l~~~ll~~I~~~ 162 (758)
.. +++.||+.|..+|++|+.++.+|+++|+||||+|+++++ .++|+++|+.+|+++||. ++++++.++++.+|+++
T Consensus 75 ~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~e 154 (354)
T 4a64_A 75 DSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERE 154 (354)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCSTTTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 32 346899999999999999999999999999999999876 799999999999999998 69999999999999999
Q ss_pred hcCCccCHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcccc
Q 004376 163 REGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYL 242 (758)
Q Consensus 163 R~g~~i~~~~l~~~i~~l~~l~~~~~~~Y~~~FE~~~L~~t~~yY~~~~~~~l~~~~~~~Yl~~v~~~l~eE~~r~~~~l 242 (758)
|.|+.+|+.+|+++++|+..| ++|.+.||++||++|.+||+.+++.|+.+.++++||++|+.++++|.+||..||
T Consensus 155 R~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL 229 (354)
T 4a64_A 155 RNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFLEETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYL 229 (354)
T ss_dssp HTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999986 589999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcHHHHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhH
Q 004376 243 HSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLA 322 (758)
Q Consensus 243 ~~~t~~kl~~~l~~~LI~~~~~~ll~~~~sgl~~ll~~~~~~dL~~ly~L~~~~~~~l~~l~~~~~~~I~~~g~~i~~~~ 322 (758)
+++|.++|.++|+++||.+|.+.|++ +|+..||++++.+||++||+||+++++|++.+++.|++||++.|.+++.+.
T Consensus 230 ~~~T~~~l~~~~e~~LI~~h~~~ll~---~~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~ 306 (354)
T 4a64_A 230 DQTTQKSLIATVEKQLLGEHLTAILQ---KGLNNLLDENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP 306 (354)
T ss_dssp CGGGHHHHHHHHHHHHTGGGHHHHHH---HHHHHHHHTTCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999883 699999999999999999999999999999999999999999999998642
Q ss_pred HHHhhhhhhhhccccccchHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhcCC
Q 004376 323 EDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 385 (758)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~l~~~~F~~~~~f~~~l~~af~~~~n~~~ 385 (758)
..+..||+.|+++|++|+.++.+||++|+.|..++++||+.|+|.+.
T Consensus 307 ----------------~~~~~~V~~LL~l~~k~~~iv~~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 307 ----------------EKDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp ----------------CSSSCHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC-----
T ss_pred ----------------cchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 23567999999999999999999999999999999999999999863
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.91 E-value=1.4e-25 Score=186.88 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=79.0
Q ss_pred hhhhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCcee
Q 004376 676 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 755 (758)
Q Consensus 676 ~e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 755 (758)
+|..++.+.+.++|++.|+||||||||++|+|+|++|+.+|.++++++|+|++.+||++||.||+||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 466778899999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred ecC
Q 004376 756 YLA 758 (758)
Q Consensus 756 Yia 758 (758)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.91 E-value=8.2e-26 Score=183.93 Aligned_cols=75 Identities=49% Similarity=0.750 Sum_probs=73.5
Q ss_pred hHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 004376 684 DVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758 (758)
Q Consensus 684 ~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 758 (758)
.+++||+..|+||||||||++|+|+|++|+.+|.++++++|+|++.+||+|||.|||||||+|+++|+++|+|+|
T Consensus 3 ~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 3 NIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred chhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.89 E-value=2e-25 Score=188.22 Aligned_cols=82 Identities=48% Similarity=0.713 Sum_probs=76.8
Q ss_pred hhhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 004376 677 EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 756 (758)
Q Consensus 677 e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 756 (758)
|...+.+.+.+||++.|+||||||||++|+|+|++|+.+|.++|+++|.|++.+||++||.||+||||+|+++|+++|+|
T Consensus 11 e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 90 (92)
T 1iuy_A 11 ERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTY 90 (92)
T ss_dssp CCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEE
T ss_pred HHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEe
Confidence 34445677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 004376 757 LA 758 (758)
Q Consensus 757 ia 758 (758)
+|
T Consensus 91 ~A 92 (92)
T 1iuy_A 91 VA 92 (92)
T ss_dssp C-
T ss_pred cC
Confidence 98
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=9.1e-25 Score=186.70 Aligned_cols=80 Identities=55% Similarity=0.800 Sum_probs=76.2
Q ss_pred hhhhHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 004376 677 EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 756 (758)
Q Consensus 677 e~~~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 756 (758)
|...+.+.+.+||++.|+||||||||++|+|+|++|+.+|.++++ |.|++.+||++||.|||||||+|+++|+++|+|
T Consensus 16 e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y 93 (101)
T 2do7_A 16 EQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYNY 93 (101)
T ss_dssp CCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEE
Confidence 445567889999999999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred cC
Q 004376 757 LA 758 (758)
Q Consensus 757 ia 758 (758)
+|
T Consensus 94 lA 95 (101)
T 2do7_A 94 IA 95 (101)
T ss_dssp CC
T ss_pred ec
Confidence 98
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=85.27 E-value=0.35 Score=37.89 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=46.4
Q ss_pred eeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 004376 698 VRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758 (758)
Q Consensus 698 VRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 758 (758)
|...|.+|.+..++|-. .|..+.+++-.+|+.|.+.|-|.--=+|+..|+||+
T Consensus 13 i~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 13 INYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 56778889888888766 588899999999999999999988878899999985
No 13
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=84.47 E-value=0.38 Score=54.66 Aligned_cols=136 Identities=10% Similarity=0.098 Sum_probs=49.2
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhc---cccccccCCCCCCCCCCCcEEeccCCCCCCceee
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCA---KYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIK 669 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~---k~~iL~~~~~~~~i~~~~~~~~N~~f~~~~~~i~ 669 (758)
+..+..||..+.+...+|..+|++.+|++...+.+.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 4577788888778889999999999999999999999999751 14566653 35788877532111000
Q ss_pred ccCCCchhhhhH-HHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 670 IPLPPVDEKKKV-IEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 670 i~~~~~~e~~~~-~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
+. .....+ ...+ + ....+..|+..++.++.++-.|+.+.+ ..+...+.+.|..|+++|-|++.+
T Consensus 500 -~~---~~~~~~~~~~~--~-~~~~~~~I~~~l~~~g~it~~di~~l~--------~ls~~qa~~~L~~Lv~~G~l~~~G 564 (583)
T 3lmm_A 500 -EP---SPFSPVRYLST--D-QAELTNAAMLWLSEVGDLATSDLMAMC--------GVSRGTAKACVDGLVDEERVVAVG 564 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -cc---ccccccccccC--C-hhHHHHHHHHHHHHcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCcEEEeC
Confidence 00 000000 0000 1 234567799999999999988887733 345677899999999999999987
Q ss_pred CCCC
Q 004376 749 SNPN 752 (758)
Q Consensus 749 ~~~~ 752 (758)
..+.
T Consensus 565 ~gr~ 568 (583)
T 3lmm_A 565 GGRS 568 (583)
T ss_dssp ----
T ss_pred CCCc
Confidence 6544
No 14
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=83.51 E-value=1.5 Score=36.53 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=42.1
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+..+..||..+.+.+.+|..||++.+|++...+.++|..|. +.+++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 46788888888887789999999999999999999999997 45777654
No 15
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=82.26 E-value=1.3 Score=35.65 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=38.3
Q ss_pred HHHHhhcCC------CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCC
Q 004376 598 SALLLFNSS------DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTK 647 (758)
Q Consensus 598 ~iLllFn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~ 647 (758)
.||....+. .+.|+.||++.+|++...+.+.|..|. +.+.|.+.+.+.
T Consensus 8 ~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr 61 (77)
T 2jt1_A 8 KIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSS
T ss_pred HHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCC
Confidence 355555544 689999999999999999999999997 457888776543
No 16
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=82.08 E-value=1.3 Score=36.94 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=43.0
Q ss_pred EEEcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 590 LIVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 590 l~~s~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
..++..|..||....+ .+.++..||++.++++...+.++|..|.. -+++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIkr 68 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 68 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEE
Confidence 4567899999988876 56899999999999999999999999974 366653
No 17
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.04 E-value=1.3 Score=44.49 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=44.2
Q ss_pred EEcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.+|..|..||..+.+. +++|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 4688999999998764 589999999999999999999999997 457887654
No 18
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=81.37 E-value=3 Score=34.70 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=40.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPN 645 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~ 645 (758)
+.....||..+.+ +..|+.||++.+|++...+.++|..|.. .+++.....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~ 71 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRR--DGLVTTRKE 71 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEe
Confidence 3556677877777 7899999999999999999999999974 578876543
No 19
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=80.59 E-value=2.1 Score=38.41 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=44.7
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 590 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 590 l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+.+|..|..||..+...+ +|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 357899999999999888 9999999999999999999999997 457887653
No 20
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=80.56 E-value=1.5 Score=39.18 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=45.5
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.+|..|..||..+...+++|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 glt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 33 DLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp TCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 3578999999999888899999999999999999999999997 457787653
No 21
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=80.47 E-value=1.8 Score=34.70 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=36.7
Q ss_pred HHHHHHhhcCCC---CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 596 QASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 596 Q~~iLllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+..||.++.+.. .+|..||++.+|++...+.+.|..|. +.+++...
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~ 64 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec
Confidence 356666665554 89999999999999999999999996 34677654
No 22
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=79.56 E-value=1.8 Score=38.82 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=44.4
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|..||..+...+.+|..+|++.+|++...+.+.+..|.. .+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAG--QGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeecc
Confidence 5789999999988777899999999999999999999999974 57777653
No 23
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=78.92 E-value=1.6 Score=36.78 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~--~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLK--RGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 5778999998887777899999999999999999999999974 4677653
No 24
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=78.91 E-value=3.2 Score=34.50 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=43.6
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
+..+..||.++ .+.+|..||++.+|++...+.++|..|.. .+++.+.. +.|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~--~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEA--GFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEC--------CEEEECCC
Confidence 45566777777 45699999999999999999999999974 57777542 26777664
No 25
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=77.59 E-value=1.5 Score=39.30 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=41.7
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.+|..|+.||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 4678999999999888899999999999999999999999997 457887653
No 26
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=77.42 E-value=2.2 Score=38.31 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=44.5
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.++..|..||..+...+.+|..+|++.+|++...+.+.+..|.. .+++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEE--KKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEeec
Confidence 46789999999998888999999999999999999999999974 47777653
No 27
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=77.41 E-value=3.1 Score=37.70 Aligned_cols=50 Identities=6% Similarity=0.159 Sum_probs=44.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~--~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA--RGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 5789999999998888999999999999999999999999974 4777654
No 28
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=77.03 E-value=1.9 Score=38.02 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=43.8
Q ss_pred EEcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.+|..|..||..+... +.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 3578899888877666 789999999999999999999999997 457887653
No 29
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=76.84 E-value=4.6 Score=32.33 Aligned_cols=43 Identities=19% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 598 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 598 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
.||..+.+.+.+|..||++.+|++...+.+.|..|.. .+++..
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~--~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEK--AGMVQR 46 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4566666667899999999999999999999999974 467764
No 30
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=76.68 E-value=1.9 Score=38.94 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|..||..+...+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 578999999998878899999999999999999999999997 457887653
No 31
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.09 E-value=2.7 Score=37.54 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhh-cCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+ ...+.+|..+|++.+|++...+.+.+..|.. .+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~--~glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES--QGLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCeeecC
Confidence 467888899888 7778899999999999999999999999974 46776543
No 32
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=76.08 E-value=1.6 Score=39.03 Aligned_cols=51 Identities=24% Similarity=0.175 Sum_probs=44.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|.. .+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~--~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLR--KELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHH--CCCeeccC
Confidence 5789999998888778999999999999999999999999974 57887653
No 33
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=76.04 E-value=3.4 Score=36.88 Aligned_cols=49 Identities=4% Similarity=0.042 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+. .+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEE--MGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHH--CCCEEee
Confidence 4788999998888 78899999999999999999999999974 4777654
No 34
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=75.95 E-value=2.2 Score=34.25 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 599 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 599 iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
|+.+.++++.+++.||++.+++++..+++-|..|.. .+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~--~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLES--MGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEe
Confidence 667778888999999999999999999999999974 4667665
No 35
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=75.44 E-value=2.4 Score=37.29 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=42.8
Q ss_pred EEcHHHHHHHHhhcCCCC--ccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~--~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+.+.+. +|..||++.+|++...+.+.|..|.. .+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~--~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE--KEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEee
Confidence 457889999988776555 99999999999999999999999974 5777654
No 36
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=75.19 E-value=2.4 Score=34.83 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=37.2
Q ss_pred HHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 599 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 599 iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
|+.++++.+.+|++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 66777888899999999999999999999999997 44667665
No 37
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=75.00 E-value=2.8 Score=37.96 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..|..||..+...+.+|..+|++.++++...+.+.+..|.. .+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~--~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLIS--LGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEe
Confidence 5789999999888878899999999999999999999999974 477766
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=74.79 E-value=2.4 Score=37.56 Aligned_cols=51 Identities=22% Similarity=0.293 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCC--CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|..||..+...+ .+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 5678999998877654 89999999999999999999999997 457777653
No 39
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.65 E-value=3.6 Score=33.31 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=34.7
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 597 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 597 ~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
..||.++.... .|+.||++.+|++...+.++|..|.. -+++.+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~--eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQR--SAMVYSS 63 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHH--HTSSEEC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC
Confidence 34555555544 99999999999999999999999973 4677665
No 40
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=74.44 E-value=2.2 Score=37.70 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~--~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEE--SGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 4788999998888878899999999999999999999999974 4677654
No 41
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=74.39 E-value=1.3 Score=35.70 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=37.2
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
|...++.++.++.++|.+ +|..++..|.+-|+.|.++|+|+|.
T Consensus 7 Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 556677788888887766 6999999999999999999999997
No 42
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=74.05 E-value=4.4 Score=32.78 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=41.3
Q ss_pred HHHHHHhhcCCC---CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEecc
Q 004376 596 QASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 659 (758)
Q Consensus 596 Q~~iLllFn~~~---~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~ 659 (758)
+..||.++.+.. .+|..||++.+|++...+.+.|..|. +.+++.+.+. ....|.+..
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g~-----~~~~W~i~~ 71 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEAG-----TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESS-----SSCEEEEC-
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecCC-----CCCeeEEeC
Confidence 555666665555 79999999999999999999999996 3467765431 125566554
No 43
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=73.82 E-value=3.1 Score=37.44 Aligned_cols=50 Identities=14% Similarity=0.189 Sum_probs=43.7
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~--~Glv~r~ 87 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQR--AGLIERR 87 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCeeec
Confidence 5788999999888777899999999999999999999999974 4777664
No 44
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=73.71 E-value=3.3 Score=36.71 Aligned_cols=50 Identities=12% Similarity=0.255 Sum_probs=42.4
Q ss_pred EcHHHHHHHHhhcCCC--CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+ .+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~--~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI--KKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH--CCCEEee
Confidence 5678998888887666 799999999999999999999999974 4777654
No 45
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=73.24 E-value=2.6 Score=37.31 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVC--KGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHH--CCCEEec
Confidence 4788999998888777899999999999999999999999974 4677654
No 46
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=73.15 E-value=4.8 Score=35.16 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=39.7
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+..+..||..+...+.+|+.||++.+|++...+.++|..|. ..+++....
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 34566677777655679999999999999999999999997 457776543
No 47
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.84 E-value=2.2 Score=39.14 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.4
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 568899999988888899999999999999999999999997 457777653
No 48
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.78 E-value=3.7 Score=32.96 Aligned_cols=51 Identities=18% Similarity=0.254 Sum_probs=43.2
Q ss_pred EEcHHHHHHHHhhcCC--CCccHHHHHHHh-----CCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSS--DRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~--~~~t~~ei~~~t-----~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
..+.-+..||..+.+. ..+|.+||++.+ +++...+.+.|..|.. .+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~--~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD--AGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH--CCCeEEE
Confidence 4567888899888775 589999999999 9999999999999984 5777764
No 49
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=72.75 E-value=2.9 Score=35.13 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=39.6
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..+|+.+-. .+.+|..||++.+|++...+.+.|..|.. .+++.+.
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~--~g~v~~~ 69 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIE--LGLVVRT 69 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEee
Confidence 45667766655543 66899999999999999999999999974 5777654
No 50
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=72.71 E-value=3.4 Score=37.72 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 46 ~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~glv~r~ 96 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLE--RGFIRRE 96 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEC-
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeee
Confidence 35789999998888778899999999999999999999999974 4777654
No 51
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=72.44 E-value=2.4 Score=38.85 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=44.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 578899999988877899999999999999999999999997 457887653
No 52
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=71.54 E-value=3.4 Score=34.45 Aligned_cols=51 Identities=8% Similarity=0.036 Sum_probs=43.5
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHH----HHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEI----MTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei----~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+.+.+.+|..+| ++.++++...+.+.|..|.. .+++.+.
T Consensus 5 ~lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~--~gli~r~ 59 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ--EGFVKER 59 (99)
T ss_dssp SSBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 357789999999988888999999 89999999999999999973 4677654
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=71.29 E-value=3.4 Score=38.25 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|+.||..+.. .+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 56789999988876 5679999999999999999999999997 457887653
No 54
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=71.15 E-value=3.3 Score=37.40 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQA--AGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHH--CCCEeec
Confidence 4788999998888778899999999999999999999999974 4677654
No 55
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=71.04 E-value=3.2 Score=36.78 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~--~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEE--SGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEec
Confidence 35788999998888777899999999999999999999999974 4677654
No 56
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=70.87 E-value=2.8 Score=38.82 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=44.1
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 3578999999988877789999999999999999999999997 45777654
No 57
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=70.24 E-value=2.6 Score=37.30 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 36 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~--~glv~r~ 85 (140)
T 2nnn_A 36 LTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDK--RGLIQRS 85 (140)
T ss_dssp CCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHH--TTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5778999998887777899999999999999999999999974 4677653
No 58
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.10 E-value=3.5 Score=36.90 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+.. .+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 32 ~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~--~glv~r~ 83 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER--GGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH--CCCEeeC
Confidence 357889999988887 77899999999999999999999999974 4777654
No 59
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=70.10 E-value=3.4 Score=37.71 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQA--DGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 5788999999888778899999999999999999999999974 4677654
No 60
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=70.00 E-value=7.5 Score=32.48 Aligned_cols=60 Identities=13% Similarity=0.170 Sum_probs=43.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEecc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 659 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~ 659 (758)
+.....||..+.+ ++.|+.||++.+|++...+.++|..|.. .+++.....+. ...|.++.
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~--~Glv~~~~~g~----~~~y~l~~ 81 (102)
T 3pqk_A 22 HPVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLRE--SGIVETRRNIK----QIFYRLTE 81 (102)
T ss_dssp SHHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHHH--TTSEEEECSSS----CCEEEECS
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEEEeCC----EEEEEECc
Confidence 3445566766655 5699999999999999999999999974 57887654332 23466655
No 61
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=69.96 E-value=2.1 Score=37.92 Aligned_cols=50 Identities=10% Similarity=0.238 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKR--DGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHH--CCCeeec
Confidence 5789999998888878899999999999999999999999974 4677654
No 62
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=69.88 E-value=5.4 Score=35.55 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=38.8
Q ss_pred EcHHHHHHHHhhc-CCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..+|..+. ..+++|..||++.+|++...+.+.|..|.. .+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~--~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE--LGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 3556666654443 346799999999999999999999999974 5777765
No 63
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=69.72 E-value=3 Score=37.21 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+...+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~--~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEE--QGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5678888998887777899999999999999999999999974 4677654
No 64
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=69.37 E-value=4.2 Score=37.99 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=43.6
Q ss_pred cCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 572 YSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 572 ~~l~~~~l~~~~~~~~~~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++.+++.+...- .-...++..+..||.++.....+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 8 ~~~~~~~~~~~~---~m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~--~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGS---HMRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred cccccccccccc---ccccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEe
Confidence 344555555432 123357888999999888888999999999999999999999999974 466654
No 65
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=69.20 E-value=6.1 Score=31.28 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 599 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 599 iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..+.+.+..|..+|+..+|++...+.++|-+|- +-+.+.+.+
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 35667777779999999999999999999999997 345565544
No 66
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=68.72 E-value=1.5 Score=36.06 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=36.6
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
|...++.++.++.++|.+ .|..++..|.+-|+.|.++|+|+|..
T Consensus 7 Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455667777777777765 68999999999999999999999973
No 67
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=68.72 E-value=3.6 Score=36.95 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~--~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMER--NGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999998888777899999999999999999999999974 4677654
No 68
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.72 E-value=3.7 Score=37.19 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~--~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK--RGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEee
Confidence 5788999998887777899999999999999999999999974 4677654
No 69
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=68.61 E-value=2.5 Score=38.64 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+...+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 456888888888777889999999999999999999999997 457777653
No 70
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=68.53 E-value=10 Score=34.85 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 595 YQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 595 ~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
+.+.+.+.-+. ...+|.++|++.+++|...+.+.|..|. +.+++.... | .++.|.+..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIR-G----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC-S----TTCEEEECSC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec-C----CCCceEecCC
Confidence 34444444443 3469999999999999999999999997 567876442 1 2456877653
No 71
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=68.39 E-value=3 Score=37.68 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=43.9
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~--~glv~r~ 84 (155)
T 1s3j_A 34 GVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQ--KNLIART 84 (155)
T ss_dssp TCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEeec
Confidence 35788999998888777899999999999999999999999974 4677654
No 72
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=67.90 E-value=4.3 Score=36.51 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|..||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 46789999987753 4478999999999999999999999997 457887653
No 73
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=67.76 E-value=4.2 Score=32.59 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=43.5
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.++..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.. .+++.+.+
T Consensus 6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~--kGlv~r~~ 61 (82)
T 1p6r_A 6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK--KGALNHHK 61 (82)
T ss_dssp CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH--TTSEEEEE
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH--CCCeEEEe
Confidence 36788999998887778899999999986 688999999999974 47777653
No 74
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=67.72 E-value=3.5 Score=36.88 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+...+.+|..+|++.++++...+.+.|..|.. .+++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~--~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQ--QGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHH--HTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHH--CCCEEecc
Confidence 5788999998888777899999999999999999999999974 47776653
No 75
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=67.71 E-value=3.7 Score=37.10 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=41.4
Q ss_pred EcHHHHHHHHhh--cCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLF--NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllF--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|+.||..+ ++.+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 567788777665 445679999999999999999999999997 457887654
No 76
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.58 E-value=2.3 Score=38.36 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=37.0
Q ss_pred EcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|..||..+... +.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 578899999887765 789999999999999999999999997 457887653
No 77
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=67.56 E-value=2.6 Score=37.59 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~--~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQ--VDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 5788999999888778899999999999999999999999974 4777654
No 78
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.39 E-value=2.8 Score=37.13 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=43.2
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~--~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLER--DGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH--CCCEEee
Confidence 5788999998888777899999999999999999999999974 4677654
No 79
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=67.11 E-value=11 Score=33.89 Aligned_cols=56 Identities=16% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEecc
Q 004376 597 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 659 (758)
Q Consensus 597 ~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~ 659 (758)
+.+.+.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++.... | .++.|.+..
T Consensus 16 ~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (143)
T 3t8r_A 16 LMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVR-G----AKGGYQLRV 72 (143)
T ss_dssp HHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECS-S----SSSEEEESS
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecC-C----CCCCeeecC
Confidence 3333433333 469999999999999999999999997 567876432 1 245687755
No 80
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=67.03 E-value=11 Score=29.37 Aligned_cols=57 Identities=7% Similarity=0.155 Sum_probs=43.0
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccCCC
Q 004376 596 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 662 (758)
Q Consensus 596 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~f~ 662 (758)
.-.|.-+|.++.-||+.+|.+.|+-|+..|+.+|...+ ++.+.+. -.+.+.+-+.|.
T Consensus 10 ~d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 10 LDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 34567889999999999999999999999999998774 4544421 135566666554
No 81
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=66.93 E-value=3.4 Score=36.91 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=43.0
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.+|..|..||..+...+. |..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~--~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEA--KGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHH--CCCEEec
Confidence 357889999998888777 9999999999999999999999974 4777654
No 82
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=66.75 E-value=5.6 Score=33.19 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHH-HhCCCHHHHHHHHHHhhhccccccc
Q 004376 590 LIVTTYQASALLLFNSSDRLSYSEIMT-QLNLSDDDVVRLLHSLSCAKYKILN 641 (758)
Q Consensus 590 l~~s~~Q~~iLllFn~~~~~t~~ei~~-~t~i~~~~l~~~L~~L~~~k~~iL~ 641 (758)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|. +-+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 356889999999998888999999999 99999999999999997 446775
No 83
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.31 E-value=4.5 Score=35.95 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+...+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~--~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEA--DGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHH--CCCeeec
Confidence 5788999998888777899999999999999999999999974 4677654
No 84
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=65.90 E-value=4.8 Score=32.35 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHH-HHHHHHHHhhhccccccccC
Q 004376 594 TYQASALLLFNSSDRLSYSEIMTQLNLSDD-DVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 594 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~-~l~~~L~~L~~~k~~iL~~~ 643 (758)
..+--||.++...+..|..+|++.+|++.. .+.++|..|- +-+++.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEec
Confidence 456677777777789999999999999998 9999999997 44666544
No 85
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.76 E-value=8 Score=34.88 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=41.0
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
+..+..||..+.++..+|..||++.+|++...+.+.|..|.. .+++.+
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEK--DGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--TTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEE
Confidence 356777888888888999999999999999999999999974 467764
No 86
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=65.65 E-value=5.4 Score=33.75 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+..+..||.++. .+.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 355666776666 4578999999999999999999999997 45777654
No 87
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=65.40 E-value=7.7 Score=35.15 Aligned_cols=51 Identities=16% Similarity=0.248 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|+.||..+.. .+..+..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 57889999988864 4567889999999999999999999997 457887654
No 88
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=65.31 E-value=2.5 Score=34.02 Aligned_cols=58 Identities=16% Similarity=0.271 Sum_probs=43.1
Q ss_pred eeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 004376 695 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 757 (758)
Q Consensus 695 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 757 (758)
..|.+++-..+.++..+|...+... -.++..-+...|+.|.++|||+|..++ ..+.|-
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~g-r~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKEG-RVFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEecC-CEEEEE
Confidence 3345555556788999998877542 235788899999999999999998754 467774
No 89
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=65.21 E-value=4.4 Score=33.53 Aligned_cols=48 Identities=10% Similarity=0.251 Sum_probs=39.8
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
+..+..||..+...+.+|..+|++.+|++...+.++|..|.. .+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~--~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER--NGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 567788887776556899999999999999999999999974 467754
No 90
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=65.07 E-value=4.5 Score=38.30 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+|..|..||..+.. .+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 68899999988775 4589999999999999999999999997 457887653
No 91
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=64.48 E-value=4.6 Score=34.43 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=38.8
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+..+..||..+ ..+.+|..||++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 45667777777 44579999999999999999999999997 45777654
No 92
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=64.33 E-value=6.8 Score=36.24 Aligned_cols=58 Identities=14% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEecc
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 659 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~ 659 (758)
+++.+.|.-+....+|.++|++.+++|...+.+.|..|. +.+++...+ | .++.|.+..
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTGTV-G----KNGGYQLDL 72 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEEEC-S----TTCEEECCS
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeec-C----CCCCeEecC
Confidence 344444554555579999999999999999999999997 567775432 1 234566544
No 93
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=64.13 E-value=4 Score=31.58 Aligned_cols=45 Identities=7% Similarity=0.181 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccc
Q 004376 595 YQASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 641 (758)
Q Consensus 595 ~Q~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~ 641 (758)
..-.||.+|.+. ..+|..||++.+|++...+.+.|..|... +++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~--G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKE--DRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHT--TSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHC--CcEe
Confidence 344577777554 47999999999999999999999999743 4444
No 94
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=63.19 E-value=4.5 Score=39.06 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=44.2
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
++..|..||..+...+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578999999888777789999999999999999999999997 457777653
No 95
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=62.59 E-value=5.7 Score=35.56 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=41.8
Q ss_pred EEEEcHHHHHHHHhhcC-----CCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 589 ELIVTTYQASALLLFNS-----SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 589 ~l~~s~~Q~~iLllFn~-----~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++-+|.-++.+|+.+-. ....|.++|++.+|++..++.+.|..|.. -++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 45677888888876544 34689999999999999999999999985 366654
No 96
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=62.13 E-value=4.8 Score=33.92 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=44.7
Q ss_pred hceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 004376 693 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 758 (758)
Q Consensus 693 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yia 758 (758)
-|..|.+++-..+.++..+|.+.+.. .-.++..-|...|+.|.++|||+|..+ ...|.|-|
T Consensus 36 ~e~~VL~~L~~~~~~t~~eL~~~l~~----~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 36 AELIVMRVIWSLGEARVDEIYAQIPQ----ELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp SCSHHHHHHHHHSCEEHHHHHHTCCG----GGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHhc----ccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 35566666666667888777774432 124578889999999999999999875 45788865
No 97
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=62.03 E-value=7.5 Score=35.17 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=41.8
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..+..||.++.+.+.+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLES--RGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 5677888888888778899999999999999999999999974 467754
No 98
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=61.95 E-value=3.7 Score=37.40 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=43.4
Q ss_pred EcHHHHHHHHhh-cCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|+.||..+ ...+.+|..+|++.+|++...+.+.+..|.. .+++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~--~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK--DGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH--HTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH--CCCEEee
Confidence 578999999888 5677899999999999999999999999974 4777765
No 99
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=61.06 E-value=4.6 Score=34.42 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=36.8
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.+..||..+.+ +.+|+.||++.+|++...+.++|..|.. .+++...
T Consensus 26 ~r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~ 71 (108)
T 2kko_A 26 RRLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALKS--GGLVEAR 71 (108)
T ss_dssp TTHHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred HHHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 34456666654 6789999999999999999999999974 5777654
No 100
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=60.98 E-value=18 Score=31.66 Aligned_cols=48 Identities=17% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 606 SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 606 ~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
...+|..+|++.+|+|...+.+.|..|. +.+++...+. .++.|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~g-----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIRG-----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecCC-----CCCceEeCCC
Confidence 3579999999999999999999999997 4577764421 2356776553
No 101
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=60.78 E-value=13 Score=33.59 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=40.4
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
+.+.+.+.-+....+|.++|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s~r------G~GGy~L~~~ 74 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYVNR------GPGGAGLLKD 74 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEcc------CCCceEeCCC
Confidence 334444444444579999999999999999999999997 467876432 1355776553
No 102
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=60.54 E-value=4.4 Score=36.53 Aligned_cols=49 Identities=16% Similarity=0.223 Sum_probs=42.9
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
.+|..|..||..+ ..+++|..+|++.+|++...+.+.+..|.. .+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~--~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLN--AELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH--TTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEEe
Confidence 4578999999888 778999999999999999999999999974 477775
No 103
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=60.51 E-value=4.7 Score=45.16 Aligned_cols=134 Identities=15% Similarity=0.143 Sum_probs=85.4
Q ss_pred HHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccCCCCCCceeeccCCCchhhh
Q 004376 600 LLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKK 679 (758)
Q Consensus 600 LllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~f~~~~~~i~i~~~~~~e~~ 679 (758)
.-.+...+.+|+.+|...|+++...++..|..|++ .+++.-.+.+. ....|.+|.+ .-..+++.|-
T Consensus 25 ~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQ--h~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk------- 90 (534)
T 2xub_A 25 GVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQ--HNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR------- 90 (534)
T ss_dssp HHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH-------
T ss_pred HHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHh--cCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH-------
Confidence 33333457899999999999999999999999984 56665332110 1133444432 0001111110
Q ss_pred hHHHhHHHhhhhhhceeeeeccccCCCCChHHHHHHHHHHhcCC----CCCChHHHHHHHHhhhhhccccccCC
Q 004376 680 KVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRM----FKPDFKAIKKRIEDLITRDYLERDKS 749 (758)
Q Consensus 680 ~~~~~~~~~r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~----F~~~~~~ik~~Ie~Liereyi~r~~~ 749 (758)
.- ...+.+--..-|.|+-.+=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 91 -~l-~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 91 -YI-YTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp -HH-HHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred -HH-HHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 00 0111112223366777777889999999999998765321 13578899999999999999999874
No 104
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=60.48 E-value=6.2 Score=35.30 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.8
Q ss_pred hcCCCCCChHHHHHHHHhhhhhccccc
Q 004376 720 LGRMFKPDFKAIKKRIEDLITRDYLER 746 (758)
Q Consensus 720 l~~~F~~~~~~ik~~Ie~Liereyi~r 746 (758)
+..+...++..|-+.|..|+++|||+|
T Consensus 57 LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 57 LQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 335678889999999999999999999
No 105
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=60.10 E-value=7.2 Score=32.63 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=41.9
Q ss_pred EEcHHHHHHHHhhcCC------CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSS------DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~------~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
-+++.|..+|..+... ..++..+|++.++++...+.++|..|. +.+++...
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r~ 69 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADVS 69 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEee
Confidence 3688999998866544 579999999999999999999999997 44676543
No 106
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=59.42 E-value=8.9 Score=33.80 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=40.8
Q ss_pred EEEcHHHHHHHHhhc---C--CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 590 LIVTTYQASALLLFN---S--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 590 l~~s~~Q~~iLllFn---~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+-++.-|+.||+.+- + ....|..+|++.+|++...+.+.|..|.. .++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~--kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQ--KGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHH--TTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEEe
Confidence 346677777776553 2 22489999999999999999999999984 57887653
No 107
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=59.34 E-value=6.6 Score=39.04 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=43.0
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 149 ~L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 3567888999888766789999999999999999999999997 45777653
No 108
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=58.72 E-value=9.5 Score=34.23 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=40.8
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..+..||.++.++..+|..||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLES--FGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 3556777888888778899999999999999999999999974 466654
No 109
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=58.41 E-value=18 Score=32.48 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=39.5
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 596 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 596 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
.+.+.+.-+.. . |.++|++.+++|...+.+.|..|. +.+++.... .++.|.+..+
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~r------G~GGy~Lar~ 67 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSRA------GVPGASLKKD 67 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECCS------SSSSCEESSC
T ss_pred HHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEeec------CCCCceecCC
Confidence 34444444443 5 999999999999999999999997 568886432 1345776553
No 110
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.20 E-value=14 Score=29.67 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=32.4
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhh
Q 004376 598 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 634 (758)
Q Consensus 598 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 634 (758)
.|--++|+...+|+.+|++.+|++.+++..++.-|..
T Consensus 12 ~VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 12 KVWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 4556677777999999999999999999999999875
No 111
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=58.08 E-value=8.8 Score=35.75 Aligned_cols=52 Identities=19% Similarity=0.309 Sum_probs=43.0
Q ss_pred EEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 589 ELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 589 ~l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
...++..+..||.++.....+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 12 ~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~--~G~I~~ 63 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQE--RGVIER 63 (171)
T ss_dssp --CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred cCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEe
Confidence 3456778888998888888899999999999999999999999974 466653
No 112
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=57.10 E-value=7.9 Score=34.43 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
+..+..||..+..++.+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEE--KGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--HTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEec
Confidence 345677888887777899999999999999999999999974 467754
No 113
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=56.66 E-value=9 Score=38.37 Aligned_cols=56 Identities=14% Similarity=0.268 Sum_probs=44.5
Q ss_pred HHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 597 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 597 ~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
..||.+|.+. ..+|+.||++.+|++...+.+.|..|.. .+.+.+.+. +..|.+-..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~--~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQE--AGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEcCC------CCcEEcCHH
Confidence 3578888874 6899999999999999999999999984 578876542 356776554
No 114
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=56.05 E-value=12 Score=36.81 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=43.3
Q ss_pred HHHHHhhcCCC-CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 597 ASALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 597 ~~iLllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
..||.+|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 9 l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 9 ASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 35777887654 79999999999999999999999997 4578876532 345776543
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=55.42 E-value=16 Score=29.91 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=35.6
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 590 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 590 l~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
..+|.-+..||.++- ..+|..||++.+|++...++.++..+.
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456788888888877 468999999999999999999988775
No 116
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=55.39 E-value=11 Score=34.23 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=41.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..+..||.++.++..+|+.||++.+|++...+.+.|..|.. .+++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQ--AGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--cCCcce
Confidence 5567778888888888999999999999999999999999974 466653
No 117
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=54.84 E-value=11 Score=33.95 Aligned_cols=49 Identities=10% Similarity=0.223 Sum_probs=41.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..+..||.++.++...|+.+|++.+|++...+.+.|..|.. .+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE--SGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH--HTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEE
Confidence 4567778888888878899999999999999999999999974 466654
No 118
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=54.64 E-value=11 Score=33.98 Aligned_cols=49 Identities=20% Similarity=0.383 Sum_probs=41.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..+..||.++.++..+|..||++.+|++...+.+.+..|.. .+++.+
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKK--LGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4567778888888888999999999999999999999999974 466653
No 119
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=54.58 E-value=19 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=33.7
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
.+|.-|..|+.++ ....|..||++.+|++...+...+..+.
T Consensus 11 ~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 11 LLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3577788888777 3467999999999999999998887764
No 120
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=54.31 E-value=14 Score=33.18 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=37.1
Q ss_pred EcHHHHHHHHhhcCC-----CCccHHHHHHHhCCCHHHHHHHHHHhhhcccccc
Q 004376 592 VTTYQASALLLFNSS-----DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 640 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~-----~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL 640 (758)
+|..|..||..+... +.+|..+|++.++++...+.+.+..|.. .+++
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~--~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR--DGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH--TTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH--CCCE
Confidence 578899999887654 3589999999999999999999999973 3666
No 121
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=53.90 E-value=6.4 Score=32.65 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=39.1
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 754 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 754 (758)
|...+...+.++..+|...+. ..+..+.+.+-+.|..|.++|||+|..+.+..+
T Consensus 13 iL~~l~~~~~~~~~el~~~la----~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~ 66 (99)
T 1tbx_A 13 VLAYLYDNEGIATYDLYKKVN----AEFPMSTATFYDAKKFLIQEGFVKERQERGEKR 66 (99)
T ss_dssp HHHHHTTCTTCBHHHHHHHHH----TTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHH----HHcCCCHHHHHHHHHHHHHCCCEEEEecCCceE
Confidence 344444566788777765554 356778999999999999999999976544433
No 122
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=53.53 E-value=12 Score=32.24 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=39.3
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
+..+..||.++.+ +..++.||++.+|++...+.++|..|.. .+++....
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~~--~GlV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLRG--CGLVVATY 68 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHTT--TTSEEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCceEEEE
Confidence 4566777777764 4689999999999999999999999973 57776543
No 123
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=53.42 E-value=7.5 Score=33.74 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=43.4
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.+|..|..||..+-+.+++|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998888888999999999997 57999999999997 44777764
No 124
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=53.12 E-value=10 Score=41.55 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=45.8
Q ss_pred EEcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~--~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.+|..|..||..+.+. +.+|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 4688999999999887 889999999999999999999999997 457887653
No 125
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=53.04 E-value=16 Score=27.32 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCccHHHHHHHh-----CCCHHHHHHHHHHh
Q 004376 596 QASALLLFNSSDRLSYSEIMTQL-----NLSDDDVVRLLHSL 632 (758)
Q Consensus 596 Q~~iLllFn~~~~~t~~ei~~~t-----~i~~~~l~~~L~~L 632 (758)
+..|+.+++..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44555566767789999999999 99999999999854
No 126
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=52.81 E-value=16 Score=31.78 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 594 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 594 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
..+..||..+.+ +..++.+|++.+|++...+-++|..|.. .+++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~--~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRN--LRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 455667766654 5789999999999999999999999974 5677643
No 127
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=52.69 E-value=15 Score=32.67 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhC----CCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNS-SDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~-~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+|..|..||..+-+ .+.+|..||++.++ ++...+.+.|..|.. -+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~--kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAK--KNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHH--CCCEEEE
Confidence 57889999988877 57899999999997 799999999999974 4777764
No 128
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=52.29 E-value=13 Score=33.95 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=41.4
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++..+..||.++.+...+|+.||++.+|++...+.+.|..|.. .+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~--~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLED--AGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEee
Confidence 4667778888888878899999999999999999999999974 466654
No 129
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=52.10 E-value=13 Score=37.11 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=44.0
Q ss_pred EEcHHHHHHHHhhcCCC--CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~--~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.+|..|..||..+...+ .+|..||++.++++...+.+.+..|. +.+++.+.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 35789999998887654 59999999999999999999999997 457887764
No 130
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=51.99 E-value=10 Score=30.20 Aligned_cols=58 Identities=5% Similarity=0.114 Sum_probs=42.6
Q ss_pred eeeeccccC--CCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 004376 696 SIVRIMKSR--KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 756 (758)
Q Consensus 696 ~IVRimK~~--k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 756 (758)
.|...+... +.++..+|...+.+.. ..++..-|-+.|+.|.+.|+|.|...+.+...|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 455666654 6899999999876532 256888999999999999999987543333444
No 131
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=51.96 E-value=4.6 Score=35.18 Aligned_cols=58 Identities=22% Similarity=0.360 Sum_probs=41.9
Q ss_pred eeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 004376 695 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 757 (758)
Q Consensus 695 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 757 (758)
..|.+++-..+.++..+|...+.. ...++..-+...|+.|.++|||+|..++ ..+.|.
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~-r~~~~~ 70 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSE-NIYFYS 70 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCC-CeEEEE
Confidence 344555555677888888876642 1345788899999999999999998754 466664
No 132
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=51.68 E-value=5.2 Score=36.83 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=39.5
Q ss_pred EcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+.. .+.+|..+|++.++++...+.+.+..|. +.+++.+.
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~ 95 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRT 95 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeec
Confidence 56789999988776 3589999999999999999999999997 45787765
No 133
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.58 E-value=21 Score=28.49 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=33.5
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
.+|.-|..|+.++ ...+|.+||++.+|++...++..+....
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3567788888776 3568999999999999999998887664
No 134
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=48.96 E-value=8.7 Score=33.15 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=43.0
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHHHhhhccccccccC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.++..|..||..+.+.+.+|..+|++.++ ++...+.+.|..|.. .+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~--~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYK--KGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH--HTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH--CCCeEEE
Confidence 46788999998887777899999999998 789999999999974 4777654
No 135
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=48.59 E-value=13 Score=31.99 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=38.5
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++....||.++.+ ++.|+.||++.+|++...+-++|..|. +.+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3455667766664 678999999999999999999999997 45788654
No 136
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=48.38 E-value=17 Score=31.10 Aligned_cols=47 Identities=13% Similarity=0.187 Sum_probs=38.7
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
+..|..||..+.+ +..|+.+|++.+|++...+.++|..|.. .+++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~--~Glv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRN--LGLVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHH--HCSEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 3567778877776 6789999999999999999999999974 466654
No 137
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=48.26 E-value=21 Score=35.35 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHhhcCCC-CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEecc
Q 004376 597 ASALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 659 (758)
Q Consensus 597 ~~iLllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~ 659 (758)
..||.+|.+.. .+|+.||++.+|++...+.+.|..|.. .+++.+. .+..|.+..
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~--~G~v~~~-------~~~~Y~lg~ 65 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEE--KGFVLRK-------KDKRYVPGY 65 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHH--TTSEEEC-------TTSCEEECT
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEEEC-------CCCcEEECH
Confidence 45777787654 799999999999999999999999974 5777653 134576654
No 138
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.11 E-value=24 Score=32.27 Aligned_cols=46 Identities=11% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
....||.++.++..+|+.+|++.+|++...+.+.+..|.. .+++..
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~--~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE--DGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH--TTSSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCeee
Confidence 3456788888888999999999999999999999999974 466653
No 139
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=47.49 E-value=12 Score=37.70 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=35.9
Q ss_pred HHHHhhcCCC-CccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 598 SALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 598 ~iLllFn~~~-~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.||.+|.+.. .+|+.||++.+|++...+.+.|..|.. .+.|.+.
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~--~G~v~~~ 78 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTE--LDLLARS 78 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEC
Confidence 4888888654 699999999999999999999999984 5788765
No 140
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=46.70 E-value=14 Score=30.33 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCC-CccHHHHHHHhCCCHHH-HHHHHHHhhhccccccc
Q 004376 595 YQASALLLFNSSD-RLSYSEIMTQLNLSDDD-VVRLLHSLSCAKYKILN 641 (758)
Q Consensus 595 ~Q~~iLllFn~~~-~~t~~ei~~~t~i~~~~-l~~~L~~L~~~k~~iL~ 641 (758)
-+..+|..+...+ .+|..||++.+|++... +.+.|..|.. .+++.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~--~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIR--AGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHH--CCCee
Confidence 3455666676665 79999999999999999 9999999973 45554
No 141
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=46.64 E-value=9.1 Score=37.69 Aligned_cols=47 Identities=13% Similarity=0.173 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
+.....||.++.+ +++|+.+|++.+|++...+.++|..|.. .+++..
T Consensus 11 ~~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~--aGLV~~ 57 (232)
T 2qlz_A 11 NKVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMER--EGVLQS 57 (232)
T ss_dssp SHHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHH--TTSEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 3455567766665 6799999999999999999999999974 577765
No 142
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.72 E-value=21 Score=29.72 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=42.3
Q ss_pred EEcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 591 IVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~--~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
.++..|..|+-+..+ ...++..+|+..++++...+.++|..|.. -+++..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~ 85 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 85 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEE
Confidence 568899999988876 55799999999999999999999999975 356654
No 143
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.69 E-value=23 Score=29.17 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=34.4
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
.+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4677888888887 4568999999999999999998887765
No 144
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.65 E-value=28 Score=27.12 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=32.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
+|.-|-.|+.++ ...+|..||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777776 4578999999999999999988877654
No 145
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=43.18 E-value=19 Score=30.45 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.6
Q ss_pred HHHhh-cCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 599 ALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 599 iLllF-n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
||..+ ..++.+|..+|++.+|++...+.++|..|.. .+++...
T Consensus 23 Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~--~GlV~~~ 66 (110)
T 1q1h_A 23 VLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE--QGFVSYR 66 (110)
T ss_dssp HHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH--HTSCEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 44333 4454799999999999999999999999974 4677644
No 146
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.87 E-value=22 Score=35.37 Aligned_cols=44 Identities=25% Similarity=0.402 Sum_probs=37.1
Q ss_pred HHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 598 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 598 ~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+.
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~--~G~v~~~ 71 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCA--RSVLTSR 71 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHH--TTSEEEC
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEC
Confidence 57778864 45899999999999999999999999974 5777765
No 147
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=42.17 E-value=34 Score=27.09 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCC-CHHHHHHHHHHhhh
Q 004376 597 ASALLLFNSSDRLSYSEIMTQLNL-SDDDVVRLLHSLSC 634 (758)
Q Consensus 597 ~~iLllFn~~~~~t~~ei~~~t~i-~~~~l~~~L~~L~~ 634 (758)
..|--++|+...+|+.+|+..+|+ +++++..++.-|..
T Consensus 13 G~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 13 GQIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 345667888889999999999999 99999999998875
No 148
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=42.17 E-value=19 Score=29.83 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=35.3
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
++....||..+-..++.|+.||++.+|++...+-++|..|.. . ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~--~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRG--K-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBT--T-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--H-hhhh
Confidence 455566663333345799999999999999999999999963 4 5543
No 149
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=42.07 E-value=13 Score=29.47 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=32.5
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
|.+.+...+.++..+|.+. +..+...+.+.+..|.+.|+|++.
T Consensus 5 Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4455555667777777663 455788899999999999999954
No 150
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=41.90 E-value=18 Score=32.86 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=39.5
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+.....||.++. .+..|+.||++.+|++...+-++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 466777887776 4679999999999999999999999997 45777654
No 151
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=41.76 E-value=5.2 Score=33.68 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=42.0
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHHHhhhccccccccCC
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~----i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.++..|..||..+-+.+.+|..||++.++ ++...+.+.|..|.. .+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~--KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVK--KEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH--TTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH--CCCEEEEe
Confidence 46778888888877777899999999997 468899999999974 47777653
No 152
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=41.68 E-value=13 Score=32.69 Aligned_cols=26 Identities=4% Similarity=0.129 Sum_probs=23.1
Q ss_pred CCCCChHHHHHHHHhhhhhccccccC
Q 004376 723 MFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 723 ~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
+...+...|.++|..|+++|||+|..
T Consensus 60 ~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 60 RMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 56778999999999999999999954
No 153
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=40.58 E-value=32 Score=28.84 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
....||..+. .+..++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 15 ~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 15 WKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp THHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3445665555 4679999999999 999999999999997 45788764
No 154
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=40.33 E-value=5.8 Score=31.65 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=38.9
Q ss_pred eeeeccccCC---CCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCc
Q 004376 696 SIVRIMKSRK---VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNM 753 (758)
Q Consensus 696 ~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 753 (758)
.|..+|+... .++..+|-..+ ..+...|.+.|..|.+.|+|++.+..+..
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~L--------gvs~~tV~~~L~~L~~~G~I~~~g~~~~~ 70 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPL 70 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHH--------CCCHHHHHHHHHHHHHHTSEEEECSSSCE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCc
Confidence 3566788877 88888877633 45678899999999999999997765543
No 155
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=40.05 E-value=28 Score=34.80 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=42.6
Q ss_pred HHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 597 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 597 ~~iLllFn~-~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
..||.+|.. ...+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~--~G~v~~~--------~~~Y~Lg~~ 78 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVE--LGYVATD--------GSAFWLTPR 78 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEES--------SSEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEec--------CCEEEEcHH
Confidence 357888875 46899999999999999999999999974 4677653 256777554
No 156
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=39.51 E-value=32 Score=34.13 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=42.5
Q ss_pred HHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCCCCCCCCCCCcEEeccC
Q 004376 597 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 660 (758)
Q Consensus 597 ~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~~~~~i~~~~~~~~N~~ 660 (758)
..||.+|... ..+|+.||++.+|++...+.+.|..|.. .+++.+. +..|.+...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~--~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQK--LGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEeC--------CCEEEEcHH
Confidence 4578888754 5799999999999999999999999974 5677653 256777554
No 157
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=39.45 E-value=47 Score=25.08 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=29.7
Q ss_pred EcHHHHHHHHhhc---CCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 592 VTTYQASALLLFN---SSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 592 ~s~~Q~~iLllFn---~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
+|.-|-.|+.+.- ....+|++||++.+|++...++..+..-
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555555554433 2457899999999999999888776644
No 158
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=39.40 E-value=5.3 Score=31.96 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=28.7
Q ss_pred CCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCC
Q 004376 705 KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 751 (758)
Q Consensus 705 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~ 751 (758)
...+..||.+. |..+..-|.+-|..|.++|||+|+...+
T Consensus 23 ~~psv~EIa~~--------lgvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 23 APVKTRDIADA--------AGLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp SCEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 55666666553 3346777999999999999999986543
No 159
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=39.20 E-value=23 Score=30.34 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=42.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHh--CCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQL--NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t--~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++...-.||.++.+...+|..+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 456677888888776789999999999 999999999999997 45788654
No 160
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=38.63 E-value=19 Score=28.49 Aligned_cols=37 Identities=5% Similarity=0.236 Sum_probs=31.4
Q ss_pred HHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 597 ASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 597 ~~iLllFn~~-~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
=.||-.+.+. ..++..+|++.+|++.++|.++|..|-
T Consensus 22 ekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 22 QRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3466666654 589999999999999999999999996
No 161
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=38.37 E-value=12 Score=32.68 Aligned_cols=48 Identities=15% Similarity=0.311 Sum_probs=37.7
Q ss_pred hhceeeeeccccCCC--CChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 692 AIDASIVRIMKSRKV--LGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 692 ~i~A~IVRimK~~k~--l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
..++.|.+.+..... ++..+|-..+ ..+.+.+-+.|+.|.++|||.|.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEee
Confidence 346667777776665 8988887754 34788899999999999999985
No 162
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=38.32 E-value=39 Score=31.93 Aligned_cols=49 Identities=10% Similarity=0.190 Sum_probs=40.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.+..+..||.++.+ +.+|..||++.+|++...+.+.|..|.. .+++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le~--~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLKE--AGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEEE
Confidence 35667778877774 6899999999999999999999999974 5777654
No 163
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=38.05 E-value=17 Score=29.82 Aligned_cols=47 Identities=13% Similarity=0.079 Sum_probs=35.4
Q ss_pred EcHHHHHHHHhhcC-CCC---ccHHHHHHHhCCCHHHHHHHHHHhhhcccccc
Q 004376 592 VTTYQASALLLFNS-SDR---LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 640 (758)
Q Consensus 592 ~s~~Q~~iLllFn~-~~~---~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL 640 (758)
++.-+..||+.+-. .+. +|..+|++.++++...+.+.|..|.. .+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~--~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEE--AKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH--TTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CcCc
Confidence 35566666666532 233 99999999999999999999999973 3555
No 164
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=37.92 E-value=42 Score=29.34 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=37.3
Q ss_pred EEcHHHHHHHHhh----cCCCCccHHHHHHHhCCCHHHHHHHHHHhhhcccccccc
Q 004376 591 IVTTYQASALLLF----NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 642 (758)
Q Consensus 591 ~~s~~Q~~iLllF----n~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~ 642 (758)
.++..|..+|..+ ...+.+|..+|++.+|++...+.+.|..|.. .+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~--~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEE--KGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHH--CCCEEe
Confidence 4455565555443 3456899999999999999999999999974 467654
No 165
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=37.44 E-value=8.5 Score=35.90 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=41.4
Q ss_pred EcHHHHHHHHhhcCCCC---ccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 592 VTTYQASALLLFNSSDR---LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~---~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
++..|..||..+...+. +|..+|++.++++...+.+.|..|.. .+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~--~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE--KGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH--HTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH--CcCEEec
Confidence 47789989888866543 99999999999999999999999973 4777664
No 166
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=37.27 E-value=21 Score=30.37 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004376 594 TYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 594 ~~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.....||..+.+ +.+++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 22 ~~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 22 KWKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp TTHHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred ccHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 345556655544 579999999999 999999999999997 45788754
No 167
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=37.26 E-value=27 Score=30.02 Aligned_cols=58 Identities=7% Similarity=0.015 Sum_probs=49.6
Q ss_pred hhhhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 689 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 689 r~~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
++-.++.+|..++. .+.++--+|.+.+.+...+.+.++...+-..+..|.++|+|++.
T Consensus 9 ~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 9 LRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 34567788888886 47889999999998877767899999999999999999999985
No 168
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=36.96 E-value=21 Score=31.57 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 600 LLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 600 LllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+.+....+.+|..+|++.+|++...+.+.|..|.. .+++.+.
T Consensus 14 ~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~--~Glv~r~ 55 (142)
T 1on2_A 14 YMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDK--DEYLIYE 55 (142)
T ss_dssp HHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHH--CCCEEEe
Confidence 33444556799999999999999999999999974 5777654
No 169
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=36.45 E-value=10 Score=30.63 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=39.0
Q ss_pred eeeeccccCC---CCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCc
Q 004376 696 SIVRIMKSRK---VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNM 753 (758)
Q Consensus 696 ~IVRimK~~k---~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~ 753 (758)
.|...|+... .++..+|-..+ ..+...|.++|..|.+.|+|.+.+..+..
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~L--------gvsr~tV~~~L~~Le~~G~I~~~g~~~~~ 66 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKL--------GTPKKEINRVLYSLAKKGKLQKEAGTPPL 66 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEESSSSCE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEecCCCCCe
Confidence 3667777777 88888887733 46778899999999999999987655543
No 170
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=36.40 E-value=85 Score=22.27 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHH
Q 004376 607 DRLSYSEIMTQLNLSDDDVVRLLH 630 (758)
Q Consensus 607 ~~~t~~ei~~~t~i~~~~l~~~L~ 630 (758)
..+|..+|++.+|++...+.+.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 357999999999999999887653
No 171
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=36.20 E-value=28 Score=30.73 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=40.5
Q ss_pred ceeeeecccc-CCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 004376 694 DASIVRIMKS-RKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 756 (758)
Q Consensus 694 ~A~IVRimK~-~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Y 756 (758)
+..|++++-. ...++..+|...+.. .-..+..-+...|+.|.++|||+|..+++ .+.|
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r-~~~~ 69 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRDDR-AHRY 69 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEecCC-eEEE
Confidence 4445556655 477888888876542 12357888999999999999999987544 5665
No 172
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=36.17 E-value=48 Score=26.58 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=28.4
Q ss_pred cHHHHHHHHh-h--cCCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 593 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 593 s~~Q~~iLll-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
|.-|-.|+.+ | .+...+|+.||++.+|++...++..+..-
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra 62 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKA 62 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555555544 3 33457999999999999999888766543
No 173
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=35.58 E-value=33 Score=25.12 Aligned_cols=35 Identities=17% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 597 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 597 ~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
..|+.++- ..+|..||++.+|++...+...+....
T Consensus 4 ~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 4 RQVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444443 357899999999999999998887765
No 174
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=35.07 E-value=42 Score=29.59 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
..+.||..+. .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 27 W~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 27 WKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp SHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 3445665555 4689999999999 999999999999997 45788765
No 175
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.73 E-value=25 Score=28.58 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.8
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 592 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 592 ~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777666 3468999999999999999998887664
No 176
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=34.67 E-value=33 Score=32.44 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=36.4
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhh
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 634 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 634 (758)
-|-.||.+.++++.+|.+||++.++++...+++-|.-|.-
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 4678899999999999999999999999999999998863
No 177
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=34.62 E-value=15 Score=30.06 Aligned_cols=54 Identities=6% Similarity=0.084 Sum_probs=39.8
Q ss_pred hceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 004376 693 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 754 (758)
Q Consensus 693 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y 754 (758)
.+..|.+.+...+.++..+|...+ ..+.+.+-+.+..|.+.|+|++..+.+..+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l--------~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT--------GLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH--------CCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 344566667666688888876633 457888999999999999999877554443
No 178
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=34.50 E-value=41 Score=28.49 Aligned_cols=47 Identities=11% Similarity=0.297 Sum_probs=36.3
Q ss_pred HHHHHHHHhhcCCCCcc--HHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004376 594 TYQASALLLFNSSDRLS--YSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 594 ~~Q~~iLllFn~~~~~t--~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
.....||..+.+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 27 ~wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 27 KYTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp TTHHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ccHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 344556666653 4555 99999999 999999999999997 45788764
No 179
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=34.38 E-value=37 Score=28.28 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.2
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 591 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 591 ~~s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
.+|.-|..||.++- ..+|.+||++.+|++...++..+..+.
T Consensus 34 ~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 34 RLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp SCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35677777777764 468999999999999999998887765
No 180
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=34.02 E-value=11 Score=32.45 Aligned_cols=56 Identities=23% Similarity=0.386 Sum_probs=40.4
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 757 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~Yi 757 (758)
|..++...+.++..+|...+... ..++.+-+...|+.|.++|||+|..+|+ .+.|+
T Consensus 15 vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 15 VMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp HHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred HHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 33444446778888888876532 2357888999999999999999987653 45554
No 181
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=33.30 E-value=37 Score=28.40 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=34.7
Q ss_pred HHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004376 597 ASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 597 ~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
..||..+. .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34555554 4679999999999 599999999999997 45788754
No 182
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=33.12 E-value=47 Score=29.70 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=36.3
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccCC
Q 004376 595 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 644 (758)
Q Consensus 595 ~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~~ 644 (758)
.-..||..+. .+..++.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 25 w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 25 WSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp SHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred hHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 3344554443 3578999999999999999999999997 457887653
No 183
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=32.76 E-value=50 Score=22.39 Aligned_cols=32 Identities=13% Similarity=0.066 Sum_probs=24.9
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHH
Q 004376 598 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHS 631 (758)
Q Consensus 598 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~ 631 (758)
.|+.++.+ .+|..+|++.+|++...+.+.+..
T Consensus 13 ~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 13 QLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhh
Confidence 45555543 479999999999999999887653
No 184
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.32 E-value=54 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=27.0
Q ss_pred EcHHHHHHH-Hhh--cCCCCccHHHHHHHhCCCHHHHHHHHH
Q 004376 592 VTTYQASAL-LLF--NSSDRLSYSEIMTQLNLSDDDVVRLLH 630 (758)
Q Consensus 592 ~s~~Q~~iL-llF--n~~~~~t~~ei~~~t~i~~~~l~~~L~ 630 (758)
+|.-|-.|+ +.| ++...+|++||++.+|++...++..+.
T Consensus 20 Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444444 444 234679999999999999988876554
No 185
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=32.07 E-value=62 Score=24.78 Aligned_cols=40 Identities=8% Similarity=0.122 Sum_probs=27.8
Q ss_pred cHHHHHHHHh-h--cCCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 593 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 593 s~~Q~~iLll-F--n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
+.-|-.|+.+ | .+...+|++||++.+|++...++..+..-
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4445555533 3 23357899999999999999888765543
No 186
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=31.41 E-value=49 Score=29.00 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=37.5
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t-~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+.....||..+. .+.+++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 344455665555 4679999999999 799999999999997 45788764
No 187
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=31.21 E-value=9.2 Score=34.27 Aligned_cols=51 Identities=12% Similarity=0.304 Sum_probs=33.9
Q ss_pred ceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccc----cCCCCCc
Q 004376 694 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER----DKSNPNM 753 (758)
Q Consensus 694 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r----~~~~~~~ 753 (758)
+..|...+ ..+.++..+|-..+ ..+.+.+-+.|..|.++|||+| ++.|+..
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l--------~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~ 94 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQ--------GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRL 94 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHH--------CSCSSHHHHHHHHHHHTTSEEC-----------
T ss_pred HHHHHHHH-HcCCcCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCe
Confidence 44455666 77889988887743 3456678999999999999998 6666543
No 188
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.61 E-value=37 Score=33.23 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=35.0
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 596 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 596 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
-+.|+.++.. ++.|.++|++.+|++...+..+|..|. +.+++.+.
T Consensus 167 ~~~l~~~l~~-~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 167 LAILHYLLLN-GRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHHHS-SEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHHhc-CCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 3444444444 578999999999999999999999997 56777543
No 189
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=30.06 E-value=41 Score=33.44 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=26.0
Q ss_pred cCCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 604 NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 604 n~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
+....+|+++|++.|||..+++..+|+.|
T Consensus 204 ~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 204 EHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred hcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 34568999999999999999999999988
No 190
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.12 E-value=20 Score=32.84 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=39.9
Q ss_pred hceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 693 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 693 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
++..|.+.+.....++..+|-..+ ..+...+.++|..|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 456788899999999999888744 56889999999999999999974
No 191
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=28.10 E-value=27 Score=30.29 Aligned_cols=39 Identities=13% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccc--cCCCC
Q 004376 705 KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER--DKSNP 751 (758)
Q Consensus 705 k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r--~~~~~ 751 (758)
..++..+|.. .+..+.+.+-+.|..|.++|||+| ++.|+
T Consensus 52 ~~~t~~eLa~--------~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 52 KEYYLKDIIN--------HLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SEEEHHHHHH--------HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred CCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 4555555554 345677889999999999999998 34444
No 192
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=27.11 E-value=44 Score=31.92 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.5
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+..+..||.++. .++.|+.+|++.+|++...+..+|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456777777775 4579999999999999999999999997 45788764
No 193
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=27.08 E-value=79 Score=25.46 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred EcHHHHHHHHh-hcCCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 592 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 592 ~s~~Q~~iLll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
++.-|-.|+.+ +- ..+|+.||++.+|++...++..+..-
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555554 43 35799999999999999888766543
No 194
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.35 E-value=87 Score=23.30 Aligned_cols=39 Identities=26% Similarity=0.179 Sum_probs=28.2
Q ss_pred EcHHHHHHHHh-hcCCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 592 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 592 ~s~~Q~~iLll-Fn~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
+|.-+-.|+.+ +-+ .+|.+||++.+|++...+...+...
T Consensus 16 L~~~~r~il~l~~~~--g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 16 LTTDQREALLLTQLL--GLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp SCHHHHHHHHHHHTS--CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555556644 333 4799999999999999888766654
No 195
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=26.28 E-value=52 Score=23.69 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCCCChHHHHHHHHHHHHhcCchhhHhhhhhc
Q 004376 441 KKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMV 481 (758)
Q Consensus 441 ~~La~RLL~~~~~~~~~E~~~i~~Lk~~~G~~~~~kl~~M~ 481 (758)
+-+.+|++.......+.-..|+..|+..-|........+|+
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl 44 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQML 44 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHH
Confidence 34678888777667788888999999999988888888888
No 196
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=24.83 E-value=20 Score=31.99 Aligned_cols=45 Identities=9% Similarity=0.127 Sum_probs=33.6
Q ss_pred ceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccc
Q 004376 694 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 746 (758)
Q Consensus 694 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 746 (758)
+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRL--------IITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEe
Confidence 34455555556677777777643 3467889999999999999999
No 197
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=24.60 E-value=31 Score=30.76 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=36.7
Q ss_pred hceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 693 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 693 i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
-+..|...+...+.++..+|-.. ...+.+.+-+.|..|.++|||+|..
T Consensus 44 ~~~~iL~~l~~~~~~t~~ela~~--------l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 44 PEWRVLACLVDNDAMMITRLAKL--------SLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp HHHHHHHHHSSCSCBCHHHHHHH--------TTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCCEEecc
Confidence 34556666666777888777662 3567888999999999999999864
No 198
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.59 E-value=29 Score=30.98 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=33.3
Q ss_pred ceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 694 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 694 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
+..|...+.....++..+|.. .+..+.+.+-+.|..|.++|||+|.
T Consensus 46 ~~~iL~~l~~~~~~t~~ela~--------~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 46 ELYAFLYVALFGPKKMKEIAE--------FLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp HHHHHHHHHHHCCBCHHHHHH--------HTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEee
Confidence 334444555555677777665 2456788899999999999999985
No 199
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=24.40 E-value=23 Score=30.72 Aligned_cols=48 Identities=6% Similarity=0.175 Sum_probs=32.4
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc--CCCCC
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD--KSNPN 752 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~--~~~~~ 752 (758)
|...+...+.++..+|.. .+..+.+.+-+.|..|.++|||+|. +.|+.
T Consensus 38 iL~~l~~~~~~~~~ela~--------~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r 87 (139)
T 3bja_A 38 VIQVLAKSGKVSMSKLIE--------NMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQR 87 (139)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HCSSCCTTHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred HHHHHHHcCCcCHHHHHH--------HHCCChhHHHHHHHHHHHCCCeeeccCCCCCc
Confidence 344444455677666655 2345667789999999999999984 44443
No 200
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=24.04 E-value=53 Score=32.77 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 605 SSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 605 ~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3457999999999999999999999988
No 201
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=23.69 E-value=50 Score=27.07 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=26.7
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccc
Q 004376 704 RKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 746 (758)
Q Consensus 704 ~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r 746 (758)
.+.+...+|-. +...+...+.++|..|.++|||+|
T Consensus 34 ~~gi~qkeLa~--------~~~l~~~tvt~iLk~LE~kglIkr 68 (91)
T 2dk5_A 34 NKGIWSRDVRY--------KSNLPLTEINKILKNLESKKLIKA 68 (91)
T ss_dssp TTCEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHH--------HHCCCHHHHHHHHHHHHHCCCEEE
Confidence 34566656555 356678889999999999999994
No 202
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=23.37 E-value=37 Score=27.71 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=39.2
Q ss_pred eeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCCcee
Q 004376 695 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 755 (758)
Q Consensus 695 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~~y~ 755 (758)
..|++.+.. +.++..+|...+ ..+.+.+-+.+..|.+.|+|++..+.+..|.
T Consensus 26 ~~Il~~L~~-~~~~~~ela~~l--------~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 26 LQILCMLHN-QELSVGELCAKL--------QLSQSALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHHTTT-SCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHHhc-CCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 346667766 788888877744 4567889999999999999988776555543
No 203
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=23.34 E-value=2.3e+02 Score=22.03 Aligned_cols=58 Identities=7% Similarity=0.183 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhhhccccCh-hHHHHHHHHHHHHHhcCCCC
Q 004376 391 AELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDKS 452 (758)
Q Consensus 391 ~e~La~y~d~~l~~~~~~~~~~~~~~~~l~~i~~lf~~l~~K-d~F~~~Y~~~La~RLL~~~~ 452 (758)
-++++++++..+.++ .+++++...++.+...+..+... +.|...|-..+.+-|+.+.+
T Consensus 7 C~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 7 CRKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 366788999988753 36899999999998888764443 68999999999988887654
No 204
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=23.32 E-value=40 Score=30.30 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=47.4
Q ss_pred hhhceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 691 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 691 ~~i~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
..++.+|..++.. +.++-.+|.+.+.+.....+.++...+-..+..|.++|||+|..
T Consensus 40 g~~~~~IL~~L~~-~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~ 96 (145)
T 1xma_A 40 GYVDTIILSLLIE-GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYY 96 (145)
T ss_dssp GTHHHHHHHHHHH-CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CcHHHHHHHHHHh-CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEE
Confidence 3566777777754 67888999999988776667899999999999999999998863
No 205
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=23.31 E-value=24 Score=29.15 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=36.0
Q ss_pred ceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 694 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 694 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
+..|...+...+.++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44555666666778887776643 557888999999999999999864
No 206
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=23.20 E-value=68 Score=32.05 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=24.3
Q ss_pred CccHHHHHHHhCCCHHHHHHHHHHhh
Q 004376 608 RLSYSEIMTQLNLSDDDVVRLLHSLS 633 (758)
Q Consensus 608 ~~t~~ei~~~t~i~~~~l~~~L~~L~ 633 (758)
.+|+++|++.|||..+++..+|+.|-
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l~ 237 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYLN 237 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHTT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHCC
Confidence 79999999999999999999999883
No 207
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=22.84 E-value=57 Score=27.23 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=36.4
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCC-CCChHHHHHHHHhhhhhccccccC--CCCCceee
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMF-KPDFKAIKKRIEDLITRDYLERDK--SNPNMFRY 756 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F-~~~~~~ik~~Ie~Liereyi~r~~--~~~~~y~Y 756 (758)
|.+.+. .+.++..+|... . ..+...+-+.|..|.++|+|+|.. .|+....|
T Consensus 19 IL~~L~-~~~~~~~eLa~~--------l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y 72 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRL--------MPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEY 72 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHH--------CTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEE
T ss_pred HHHHHH-hCCCCHHHHHHH--------hcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEE
Confidence 444454 567888888763 3 567888999999999999998854 34444333
No 208
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=22.27 E-value=52 Score=32.85 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=24.1
Q ss_pred HHHHhhc-CCCCccHHHHHHHhCCCHHHHHHHHHHh
Q 004376 598 SALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSL 632 (758)
Q Consensus 598 ~iLllFn-~~~~~t~~ei~~~t~i~~~~l~~~L~~L 632 (758)
.|+-.+. ..+.+|++||++.|||..+++..+|+.|
T Consensus 197 ~il~~L~~~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 197 VLLENLRDFRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp HHHHHTC-------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 4444333 3358999999999999999999999988
No 209
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=22.27 E-value=84 Score=32.24 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=35.5
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhh
Q 004376 594 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 634 (758)
Q Consensus 594 ~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~ 634 (758)
..+..||.++++...+|.++|++.+|++...+.+.|..|..
T Consensus 5 ~r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~ 45 (321)
T 1bia_A 5 TVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRD 45 (321)
T ss_dssp HHHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34566788888888899999999999999999999998864
No 210
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.95 E-value=27 Score=30.68 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=31.5
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
|...+.... ++..+|-..+ ..+.+-+-+.|..|.++|||+|..
T Consensus 43 iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEecc
Confidence 344445556 8888877743 457888999999999999999865
No 211
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=21.82 E-value=20 Score=31.55 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=35.2
Q ss_pred ceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 694 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 694 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
+..|...+...+.++..+|-..+ ..+.+.+-+.|..|.++|||+|.+
T Consensus 38 q~~vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~L~~~Glv~r~~ 84 (140)
T 3hsr_A 38 GYIVLMAIENDEKLNIKKLGERV--------FLDSGTLTPLLKKLEKKDYVVRTR 84 (140)
T ss_dssp HHHHHHHSCTTCEEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHH--------CCChhhHHHHHHHHHHCCCeEecC
Confidence 34455555566778877777633 457888999999999999998864
No 212
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=20.88 E-value=59 Score=28.32 Aligned_cols=45 Identities=13% Similarity=0.057 Sum_probs=33.2
Q ss_pred eeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 695 ASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 695 A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
..|...+. .+.++..+|.. .+..+.+.+-+.|..|.++|||+|..
T Consensus 40 ~~iL~~l~-~~~~~~~ela~--------~l~~s~~tvs~~l~~Le~~glv~r~~ 84 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLAN--------RYFVTQSAITASVDKLEEMGLVVRVR 84 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHh-cCCcCHHHHHH--------HhCCCchhHHHHHHHHHHCCCEEeec
Confidence 33444455 66777777766 24567888999999999999998853
No 213
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=20.75 E-value=45 Score=26.83 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=35.3
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccCCCCC
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPN 752 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~~~~~ 752 (758)
|..+++... ++..+|-. .+..+...+.++|..|.+.|+|.+.+..|-
T Consensus 22 IL~lL~~~g-~sa~eLAk--------~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP 68 (82)
T 1oyi_A 22 AIKTIGIEG-ATAAQLTR--------QLNMEKREVNKALYDLQRSAMVYSSDDIPP 68 (82)
T ss_dssp HHHHHSSST-EEHHHHHH--------HSSSCHHHHHHHHHHHHHHTSSEECSSSSC
T ss_pred HHHHHHHcC-CCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEeCCCCCC
Confidence 445677544 66655554 456788999999999999999999876653
No 214
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=20.57 E-value=96 Score=29.64 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=35.5
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 598 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 598 ~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+|+.+-.+.+.++..+|++.++++...+.++|..|. +.+++.+.
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le--~~GlV~r~ 53 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL--AEELLIKD 53 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEEe
Confidence 344444566789999999999999999999999997 45777664
No 215
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=20.26 E-value=1.3e+02 Score=24.53 Aligned_cols=44 Identities=25% Similarity=0.168 Sum_probs=35.1
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 596 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 596 Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
-+.||..... + ++..+|+..+|+++..+.+.+..|.. .+++.+.
T Consensus 10 i~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~~--~GLI~~~ 53 (95)
T 1r7j_A 10 IQAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLMD--LEIIRQE 53 (95)
T ss_dssp HHHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHHH--TTSEEEE
T ss_pred HHHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHHH--CCCeEEE
Confidence 3456666664 3 89999999999999999999999973 5777654
No 216
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=20.23 E-value=33 Score=29.72 Aligned_cols=43 Identities=14% Similarity=0.322 Sum_probs=30.9
Q ss_pred eeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhcccccc
Q 004376 697 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 747 (758)
Q Consensus 697 IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~ 747 (758)
|...+...+.++..+|... ...+.+.+-+.|..|.++|||+|.
T Consensus 39 iL~~l~~~~~~~~~~la~~--------l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKV--------LSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhcCCCCHHHHHHH--------HCCChHHHHHHHHHHHHCCCEEec
Confidence 3344444556777666642 345788899999999999999984
No 217
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=20.17 E-value=27 Score=30.75 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=36.3
Q ss_pred ceeeeeccccCCCCChHHHHHHHHHHhcCCCCCChHHHHHHHHhhhhhccccccC
Q 004376 694 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 748 (758)
Q Consensus 694 ~A~IVRimK~~k~l~~~~L~~~v~~~l~~~F~~~~~~ik~~Ie~Liereyi~r~~ 748 (758)
+..|.+.+.....++..+|-+.+ ..+...+.+++..|.+.|+|+|-.
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 52 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKL--------GISETAVRKRVKALEEKGIIEGYT 52 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEeccc
Confidence 34566667667778888877743 457888999999999999998753
No 218
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=20.05 E-value=20 Score=29.28 Aligned_cols=45 Identities=9% Similarity=0.053 Sum_probs=33.7
Q ss_pred cccCC-CCChHHHHHHHHHHhcCCCCCChHH-HHHHHHhhhhhccccccCCCCCc
Q 004376 701 MKSRK-VLGHQQLVLECVEQLGRMFKPDFKA-IKKRIEDLITRDYLERDKSNPNM 753 (758)
Q Consensus 701 mK~~k-~l~~~~L~~~v~~~l~~~F~~~~~~-ik~~Ie~Liereyi~r~~~~~~~ 753 (758)
+...+ .++..+|... +..+.+. +-+.|..|.++|||++++.|+..
T Consensus 24 l~~~~~~~t~~eLa~~--------l~is~~t~vs~~l~~Le~~Glv~~~~~drR~ 70 (95)
T 2pg4_A 24 FEKKGYEPSLAEIVKA--------SGVSEKTFFMGLKDRLIRAGLVKEETLSYRV 70 (95)
T ss_dssp HHHTTCCCCHHHHHHH--------HCCCHHHHHTTHHHHHHHTTSEEEEEEETTE
T ss_pred HHhcCCCCCHHHHHHH--------HCCCchHHHHHHHHHHHHCCCeecCCCCCCe
Confidence 33444 6888777663 3457788 99999999999999988777654
No 219
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=20.02 E-value=2e+02 Score=27.65 Aligned_cols=49 Identities=20% Similarity=0.081 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHHHhhhccccccccC
Q 004376 593 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 643 (758)
Q Consensus 593 s~~Q~~iLllFn~~~~~t~~ei~~~t~i~~~~l~~~L~~L~~~k~~iL~~~ 643 (758)
+..|..|+-+....+.+|..+++..+|.+....+..|..+. +-+++...
T Consensus 153 ~~~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 153 EEMVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp GGGHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 46899998888878899999999999999999999999886 35777765
Done!