BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004377
(758 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4I5V3|EPL1_GIBZE Enhancer of polycomb-like protein 1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=EPL1 PE=3
SV=2
Length = 590
Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 81/174 (46%), Gaps = 40/174 (22%)
Query: 495 RNAQVSVSKVIPIPGVCEV-LGYEDSNTVPFCRPDSYI--SVNVDEVSRALAKRTANYDM 551
+ A S + IP+P E + Y+D VPF +P SYI S V+E L YDM
Sbjct: 58 KEAGTSNDQEIPVPPPQESDINYDDLYPVPFHKPSSYIRFSQTVEECITCL------YDM 111
Query: 552 DSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAF-----EKAYFCSPDDYSNEEAAV 606
+ED+E+LK++N++ L SED FE I++ F E+ F + D N AA
Sbjct: 112 TTEDDEFLKQYNSKPPATGVL----SEDDFEHIMEVFEDTAAEQTPFAAVD---NTVAAY 164
Query: 607 NLCL----ELGQK------EVVLAVYNHWKQKRKQKRAALLRVFQGRQPKKPSL 650
++ L L Q + VY +WK +R++ G +P PSL
Sbjct: 165 DMMLPGLTHLNQSVSTDVLQHAKPVYEYWKSRRQEA---------GNKPLHPSL 209
>sp|Q8C0I4|EPC2_MOUSE Enhancer of polycomb homolog 2 OS=Mus musculus GN=Epc2 PE=2 SV=2
Length = 808
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 41/164 (25%)
Query: 502 SKVIPIPGVCEVLGYEDS-NTVPFCRPDSYISV---NVDEVSRALAKRTANYDMDSEDEE 557
S VIP+P + Y + F +P +I + N+D +YDMDSEDE
Sbjct: 71 SMVIPVPEAESNVNYYNRLYKGEFKQPKQFIHIQPFNLD-------NEQPDYDMDSEDET 123
Query: 558 WLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLC-LELGQKE 616
L + N + + FE+++D EKA SN+ + L L + +
Sbjct: 124 LLNRLNRKM--------EIKPLQFEIMIDRLEKA-------SSNQLVTLQEAKLLLNEDD 168
Query: 617 VVL-AVYNHWKQKRKQKRAALLRVFQGRQPKKPSLIPKPALRKR 659
++ AVY++W +KRK R PSLIP+ KR
Sbjct: 169 YLIKAVYDYWVRKRKNCRG-------------PSLIPQIKQEKR 199
>sp|Q52LR7|EPC2_HUMAN Enhancer of polycomb homolog 2 OS=Homo sapiens GN=EPC2 PE=1 SV=2
Length = 807
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 41/164 (25%)
Query: 502 SKVIPIPGVCEVLGYEDS-NTVPFCRPDSYISV---NVDEVSRALAKRTANYDMDSEDEE 557
S VIP+P + Y + F +P +I + N+D +YDMDSEDE
Sbjct: 71 SMVIPVPEAESNVNYYNRLYKGEFKQPKQFIHIQPFNLD-------NEQPDYDMDSEDET 123
Query: 558 WLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLC-LELGQKE 616
L + N + + FE+++D EKA SN+ + L L + +
Sbjct: 124 LLNRLNRKM--------EIKPLQFEIMIDRLEKA-------SSNQLVTLQEAKLLLNEDD 168
Query: 617 VVL-AVYNHWKQKRKQKRAALLRVFQGRQPKKPSLIPKPALRKR 659
++ AVY++W +KRK R PSLIP+ KR
Sbjct: 169 YLIKAVYDYWVRKRKNCRG-------------PSLIPQIKQEKR 199
>sp|Q6DJR9|EPC2_XENTR Enhancer of polycomb homolog 2 OS=Xenopus tropicalis GN=epc2 PE=2
SV=1
Length = 804
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 35/161 (21%)
Query: 502 SKVIPIPGV-CEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLK 560
S VIP+P V Y F +P +I + L +YDMDSEDE L
Sbjct: 71 SMVIPVPEAESNVHYYSRLYKGEFKQPKQFIHIQ----PFNLDYEQPDYDMDSEDETLLN 126
Query: 561 KFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLC-LELGQKEVVL 619
+ N + + FE+++D EKA SN+ + L L + + ++
Sbjct: 127 RLNRKM--------EIKPLQFEIMIDRLEKA-------SSNQLVTLQEAKLLLNEDDYLI 171
Query: 620 -AVYNHWKQKRKQKRAALLRVFQGRQPKKPSLIPKPALRKR 659
+VY++W +KRK R PSLIP+ KR
Sbjct: 172 KSVYDYWVRKRKNCRG-------------PSLIPQVKQEKR 199
>sp|Q66JA8|EPC2_XENLA Enhancer of polycomb homolog 2 OS=Xenopus laevis GN=epc2 PE=2 SV=1
Length = 804
Score = 42.0 bits (97), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 504 VIPIPGV-CEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKF 562
VIP+P V Y F +P +I + L +YDMDSEDE L +
Sbjct: 73 VIPVPEAESNVHYYSRLYKGEFKQPKQFIHI----TPFNLDYEQPDYDMDSEDETLLNRL 128
Query: 563 NNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVL-AV 621
N + + FE+++D EKA S S +EA L L + + ++ +V
Sbjct: 129 NRKM--------EIKPLQFEIMIDRLEKA--SSNQLVSLQEAK----LLLNEDDYLIKSV 174
Query: 622 YNHWKQKRKQKRAALLRVFQGRQPKK 647
Y++W +KRK R L + Q +Q K+
Sbjct: 175 YDYWVRKRKNCRGPCL-IPQVKQEKR 199
>sp|Q6ZPI0|JADE1_MOUSE Protein Jade-1 OS=Mus musculus GN=Phf17 PE=1 SV=2
Length = 834
Score = 41.6 bits (96), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 16/132 (12%)
Query: 470 DNWKLEFSNRQDWLDFKDLYKECSDRNAQVSVSK-VIPIPGVCEVLGYEDSNTVPFCRPD 528
D+++L N D+ D +++ ++ QV VS IP P V V+ E S + F RP
Sbjct: 61 DSYQL---NPDDYYVLADPWRQEWEKGVQVPVSPGTIPQP-VARVVSEEKS--LMFIRPK 114
Query: 529 SYISVNVDEVS-------RALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTF 581
YI+ + E R LA YD++ D WL+ N EF E + E + E T
Sbjct: 115 KYIASSGSEPPALGYVDIRTLADSVCRYDLNDMDAAWLEVTNEEF-KEMGMPE-LDEYTM 172
Query: 582 ELIVDAFEKAYF 593
E +++ FE+ +
Sbjct: 173 ERVLEEFEQRCY 184
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens
GN=BRPF3 PE=1 SV=2
Length = 1205
Score = 40.8 bits (94), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 549 YDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYF 593
YDMD ED WL N + + H VS DTFEL+VD EK +
Sbjct: 154 YDMDEEDLAWLDMVNEKRRVDG--HSLVSADTFELLVDRLEKESY 196
>sp|Q6GQJ2|JADE1_XENLA Protein Jade-1 OS=Xenopus laevis GN=phf17 PE=2 SV=1
Length = 827
Score = 40.0 bits (92), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 10/123 (8%)
Query: 478 NRQDWLDFKDLYKECSDRNAQVSVSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDE 537
N +D+ D +++ ++ QV V+ IP + E V F RP YI + E
Sbjct: 61 NPEDYYVLADPWRQEWEKGVQVPVNPEF-IPETIARVIAEKDKVVTFTRPRKYIHSSGSE 119
Query: 538 VS-------RALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEK 590
+ LA YD++ D WL+ N EF + + E T E +++ FEK
Sbjct: 120 PPEVGYVDIQTLADAVCRYDLNEMDVAWLQLINEEFKEMG--MQQLDEYTMEQVLEEFEK 177
Query: 591 AYF 593
+
Sbjct: 178 KCY 180
>sp|Q7ZVP1|JADE3_DANRE Protein Jade-3 OS=Danio rerio GN=phf16 PE=2 SV=1
Length = 795
Score = 39.3 bits (90), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 20/123 (16%)
Query: 480 QDWLDFKDLYKECSDRNAQVSVSK-VIPIPGVCEVLGYEDSNTVPFCRPDSYIS------ 532
+D+ D +K+ ++ QV S IP P V + E V F +P YI
Sbjct: 64 EDYYLLADTWKQEWEKGVQVLASPDTIPQPSV--RIITEKPKEVLFSKPRKYIQCWSQDS 121
Query: 533 -----VNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDA 587
VN+ E++ A+ + YD+D D WL++ N E + V E T E +++A
Sbjct: 122 TETGYVNIKELAEAMCR----YDLDDMDLYWLQQLNAELGMMGD--GVVDELTMERVMEA 175
Query: 588 FEK 590
E+
Sbjct: 176 LER 178
>sp|Q9H2F5|EPC1_HUMAN Enhancer of polycomb homolog 1 OS=Homo sapiens GN=EPC1 PE=1 SV=1
Length = 836
Score = 38.5 bits (88), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 33/158 (20%)
Query: 504 VIPIPGVCEVLGYEDSNTVP--FCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKK 561
VIP+P + Y +S P F P I + +L +YD+DSEDE ++ K
Sbjct: 73 VIPVPEAESNIAYYES-IYPGEFKMPKQLIHIQ----PFSLDAEQPDYDLDSEDEVFVNK 127
Query: 562 FNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAV 621
+ + FE ++D EK P S +EA + L + E++ V
Sbjct: 128 LKKKM--------DICPLQFEEMIDRLEKGSGQQP--VSLQEAKLLLKED---DELIREV 174
Query: 622 YNHWKQKRKQKRAALLRVFQGRQPKKPSLIPKPALRKR 659
Y +W +KRK R PSLIP KR
Sbjct: 175 YEYWIKKRKNCRG-------------PSLIPSVKQEKR 199
>sp|Q6IE81|JADE1_HUMAN Protein Jade-1 OS=Homo sapiens GN=PHF17 PE=1 SV=1
Length = 842
Score = 38.5 bits (88), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 470 DNWKLEFSNRQDWLDFKDLYKECSDRNAQVSVSK-VIPIPGVCEVLGYEDSNTVPFCRPD 528
D+++L N ++ D +++ ++ QV VS IP P V V+ E S + F RP
Sbjct: 60 DSYQL---NPDEYYVLADPWRQEWEKGVQVPVSPGTIPQP-VARVVSEEKS--LMFIRPK 113
Query: 529 SYISVNVDEVS-------RALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTF 581
YI + E R LA YD++ D WL+ N EF E + E + E T
Sbjct: 114 KYIVSSGSEPPELGYVDIRTLADSVCRYDLNDMDAAWLELTNEEF-KEMGMPE-LDEYTM 171
Query: 582 ELIVDAFEKAYF 593
E +++ FE+ +
Sbjct: 172 ERVLEEFEQRCY 183
>sp|Q803A0|JADE1_DANRE Protein Jade-1 OS=Danio rerio GN=phf17 PE=2 SV=1
Length = 829
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 478 NRQDWLDFKDLYKECSDRNAQVSVS-KVIPIPGVCEVLGYEDSNTVP-FCRPDSYISVNV 535
N +D+ + D +++ ++ QV VS + IP C V + +T P F +P I +
Sbjct: 59 NPEDYYELADPWRQEWEKGVQVPVSPESIP---QCAVRTVAEKSTAPLFIKPKKLIRSSE 115
Query: 536 DEV-----SRALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEK 590
+ + LA YD++ ED WL+ N EF + + E T E +++ FE+
Sbjct: 116 SSMLGYVGIQTLADGMCRYDLNEEDVAWLQITNEEFSKMG--MQPLDELTMERVMEEFER 173
Query: 591 AYF 593
+
Sbjct: 174 RCY 176
>sp|Q29EQ3|RNO_DROPS PHD finger protein rhinoceros OS=Drosophila pseudoobscura
pseudoobscura GN=rno PE=3 SV=2
Length = 3313
Score = 37.7 bits (86), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 541 ALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFE 589
ALA+ T YD+D DE WL+ +N++ H++E FE +++ E
Sbjct: 253 ALAENTCAYDIDPIDEAWLRLYNSDRAQCGAF--HINETQFERVIEELE 299
>sp|Q6CEV5|EPL1_YARLI Enhancer of polycomb-like protein 1 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=EPL1 PE=3 SV=1
Length = 839
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 497 AQVSVSKV----IPIPGVCEVLG-YEDSNTVPFCRPDSYI--SVNVDEVSRALAKRTANY 549
AQ + +KV IP P +V Y+ + F P SYI SV V+E S L Y
Sbjct: 70 AQSTGAKVEKIYIPTPDASQVWKEYDRFYSSSFHEPASYIRTSVTVEETSGCL------Y 123
Query: 550 DMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFE 589
+MD ED E+LK +SED FE ++ FE
Sbjct: 124 NMDDEDAEFLKT----------CKPPISEDDFEEVMHRFE 153
>sp|Q9FLS0|FB253_ARATH F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2
SV=1
Length = 420
Score = 37.4 bits (85), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 63/159 (39%), Gaps = 30/159 (18%)
Query: 414 CCRVEGANVILEMSHSKEWHLVVKKDGETRYSFKAQRIMRPSSFNRFTHAILWAGDDNWK 473
C R N S S+ +H+ V E + PS+F F++++ W G NW
Sbjct: 188 CLRGRSNNSFSSASDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSYSVFWNGAVNW- 246
Query: 474 LEFSNRQDWLDFKDLYKECSDRNAQVSVSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISV 533
FS+R D L F D N Q K++P+P +ED P PD I +
Sbjct: 247 YGFSSR-DCLSF--------DINTQ--EIKILPLPD----HEHEDE---PL--PDPRILM 286
Query: 534 NVDEVSRALAKRTAN---------YDMDSEDEEWLKKFN 563
+DE L N Y+M+S W K+N
Sbjct: 287 FLDESQGNLYYIEVNNQSSSNLRVYEMESNSSSWSVKYN 325
>sp|Q8C9X6|EPC1_MOUSE Enhancer of polycomb homolog 1 OS=Mus musculus GN=Epc1 PE=2 SV=1
Length = 813
Score = 37.4 bits (85), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 504 VIPIPGV-CEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKF 562
VIP+P + YE F P I + +L +YD+DSEDE ++ K
Sbjct: 73 VIPVPEAESNIAYYESIYPGEFRMPKQLIHIQ----PFSLDAEQPDYDLDSEDEVFVNKL 128
Query: 563 NNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVY 622
+ + FE ++D EK P S +EA + L + E++ VY
Sbjct: 129 KKKM--------DICPLQFEEMIDRLEKGSGQQP--VSLQEAKLLLKED---DELIREVY 175
Query: 623 NHWKQKRKQKRAALL 637
+W +KRK R + L
Sbjct: 176 EYWIKKRKTCRGSSL 190
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2
Length = 1214
Score = 37.0 bits (84), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 499 VSVSKVIPIPGVCEVLGYEDSNTVPFCRPDSY---ISVNVDEVSRALAKRTANYDMDSED 555
VS S +P V +D+ P RP SY I + +E+ + YDMD ED
Sbjct: 168 VSASTTPKLPEVVYRELEQDTPDAP-PRPTSYYRYIEKSAEELDEEV-----EYDMDEED 221
Query: 556 EEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEK-AYFCS-----PDDYSNEEAAVNLC 609
WL N TE + ++ FE ++D EK +YF S P+ +E+A +C
Sbjct: 222 YIWLDIMNERRKTEGV--SPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVCCIC 279
>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1
Length = 1058
Score = 36.6 bits (83), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 549 YDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVN 607
YDMD ED WL+ N + + + VS+ FE ++D FEK C +++ ++
Sbjct: 156 YDMDEEDYAWLEIVNEK--RKGDCVPAVSQSMFEFLMDRFEKESHCENQKQGEQQSLID 212
>sp|Q7S747|EPL1_NEUCR Enhancer of polycomb-like protein 1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=epl-1 PE=3 SV=1
Length = 589
Score = 36.6 bits (83), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 495 RNAQVSVSKVIPIPGVCEV-LGYEDSNTVPFCRPDSYI--SVNVDEVSRALAKRTANYDM 551
+ A V+ + IP+P + L Y+ + +YI S V+E L YDM
Sbjct: 58 KGAGVAADQEIPVPPPQQSELDYDQFYPQKVAKTSTYIRFSQTVEECISCL------YDM 111
Query: 552 DSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFE 589
+DE +LK +N + L SED FE I+D +E
Sbjct: 112 TEDDETFLKSYNMKLTPSARL----SEDDFERIMDVYE 145
>sp|Q5E9T7|JADE1_BOVIN Protein Jade-1 OS=Bos taurus GN=PHF17 PE=2 SV=1
Length = 509
Score = 36.6 bits (83), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%)
Query: 478 NRQDWLDFKDLYKECSDRNAQVSVSK-VIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVD 536
N ++ D +++ ++ QV VS IP P V V+ E S + F RP YI +
Sbjct: 65 NPDEYYVLADPWRQEWEKGVQVPVSPGTIPQP-VARVVSEEKS--LMFIRPKKYIVSSGS 121
Query: 537 EVS-------RALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFE 589
E R LA YD++ D WL+ N EF E + E + E T E +++ FE
Sbjct: 122 EPPELGYVDIRTLADSVCRYDLNDMDAAWLELTNEEF-KEMGMPE-LDEYTMERVLEEFE 179
Query: 590 KAYF 593
+ +
Sbjct: 180 QRCY 183
>sp|Q03FS2|RBFA_PEDPA Ribosome-binding factor A OS=Pediococcus pentosaceus (strain ATCC
25745 / 183-1w) GN=rbfA PE=3 SV=1
Length = 116
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 311 QYRSSLNSRAIQKRRSSLRRRRARNPSLIGSQKASGALVSDLTSCR-KSSIPSSSAVSKS 369
QYRS S+ I+K S + RRR R+P + G + DL + SI S A
Sbjct: 4 QYRSDRLSQEIEKEVSDILRRRVRDPRVEGVTITGVDVTGDLQQAKIYYSILSDKASDDQ 63
Query: 370 KLRSSLQHSSVLSIKEVSS 388
K ++ L+ +S L KE+ S
Sbjct: 64 KTKAGLEKASGLIRKELGS 82
>sp|Q92613|JADE3_HUMAN Protein Jade-3 OS=Homo sapiens GN=PHF16 PE=1 SV=1
Length = 823
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 478 NRQDWLDFKDLYKECSDRNAQVSVSK-VIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVD 536
N + F D +KE ++ QV S +P P + + E V F RP YI +
Sbjct: 61 NPDSYYLFADTWKEEWEKGVQVPASPDTVPQPSL--RIIAEKVKDVLFIRPRKYIHCSSP 118
Query: 537 EVSRA-------LAKRTANYDMDSEDEEWLKKFNNEFVTE--NELHEHVSEDTFELI 584
+ + LA YD+D D WL++ N + + E++ E T E++
Sbjct: 119 DTTEPGYINIMELAASVCRYDLDDMDIFWLQELNEDLAEMGCGPVDENLMEKTVEVL 175
>sp|P45444|DYHC_EMENI Dynein heavy chain, cytoplasmic OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=nudA
PE=3 SV=2
Length = 4345
Score = 33.9 bits (76), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 108 YGIVYSRKRKRNDGEKSKILEKKKYGIQFSRRQRRKKSEKIVP-FSVFGVGLESSSSGFL 166
Y V +R + D + +IL K+G + R R SE + G L+S+S+
Sbjct: 1147 YEQVQTRVNAKYDQWQHEIL--LKFGSKLGNRMREVHSEIATARHDLEGKSLDSASTAHA 1204
Query: 167 VSFLSSVLGCMRRATVELPRLASF 190
V+F++SV C R+A V P + F
Sbjct: 1205 VAFITSVQQCKRKAKVWEPEVDLF 1228
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 267,509,728
Number of Sequences: 539616
Number of extensions: 11499464
Number of successful extensions: 39635
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 39484
Number of HSP's gapped (non-prelim): 197
length of query: 758
length of database: 191,569,459
effective HSP length: 125
effective length of query: 633
effective length of database: 124,117,459
effective search space: 78566351547
effective search space used: 78566351547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)