Query 004377
Match_columns 758
No_of_seqs 212 out of 362
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 22:24:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10513 EPL1: Enhancer of pol 99.8 6.4E-21 1.4E-25 182.4 7.4 141 431-591 3-160 (160)
2 KOG2261 Polycomb enhancer prot 99.8 7E-21 1.5E-25 217.6 7.8 555 158-748 134-708 (716)
3 KOG2261 Polycomb enhancer prot 99.6 1.3E-16 2.9E-21 182.9 5.6 179 520-735 1-181 (716)
4 KOG0954 PHD finger protein [Ge 98.8 2.7E-09 5.8E-14 122.4 3.8 113 480-595 132-253 (893)
5 KOG0955 PHD finger protein BR1 98.3 6.6E-07 1.4E-11 107.9 6.0 168 410-592 29-201 (1051)
6 COG5141 PHD zinc finger-contai 96.4 0.0022 4.8E-08 72.6 3.2 43 546-593 130-172 (669)
7 KOG0954 PHD finger protein [Ge 73.5 2.9 6.3E-05 50.4 3.4 35 602-638 489-524 (893)
8 COG2896 MoaA Molybdenum cofact 39.4 18 0.00039 40.2 2.0 65 522-590 4-85 (322)
9 KOG0955 PHD finger protein BR1 35.8 1.1E+02 0.0025 39.0 8.1 29 615-643 467-496 (1051)
10 PF06252 DUF1018: Protein of u 22.9 94 0.002 29.2 3.5 39 551-594 1-40 (119)
No 1
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=99.83 E-value=6.4e-21 Score=182.41 Aligned_cols=141 Identities=31% Similarity=0.384 Sum_probs=102.6
Q ss_pred eEEEEE--EecccccchhcccccccCCCccccc--ceecccCCCCcccccCCccchhhhHHHHHHhhhccCCCC------
Q 004377 431 EWHLVV--KKDGETRYSFKAQRIMRPSSFNRFT--HAILWAGDDNWKLEFSNRQDWLDFKDLYKECSDRNAQVS------ 500 (758)
Q Consensus 431 ~~rI~I--kL~~it~~~~kaqq~i~~c~SNRen--ha~~w~~~~~wklEfpdr~~~~~fKe~~eEesE~nlqaa------ 500 (758)
.++|.| +|.++...++... +..++++|+.+ +..+-...+.=.+ ...++++|+|.+
T Consensus 3 ~~~ld~~~~l~I~~~~d~~~~-~~~~~~~~~~~~~~~~~~gv~~~~~~--------------~~~e~e~~~q~~~~~~~~ 67 (160)
T PF10513_consen 3 PRRLDIKKPLPIFREEDLDDL-DESEDSSNKNQAVPQSPTGVEKEEKL--------------SKQEWEKHLQKPISASQN 67 (160)
T ss_pred CCCCCCCCCeeEEechhcccc-cccccccccccccccccCCccchhhc--------------cccccccccccccchhhh
Confidence 456677 8888887777776 77778888775 2221111111000 233466777764
Q ss_pred -------CCCCcCCCeeeeecCCcCCCCCCCCCCCccEEeehhhhhHhhhcCCCCcCCChhhHHHHHHhhhhhcccccCC
Q 004377 501 -------VSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELH 573 (758)
Q Consensus 501 -------s~k~IPtP~vr~Ve~Yd~lY~~~F~rP~sYIRfs~eEv~~ALd~e~vEYDMDEEDEeWLe~~Nkkr~~~sDg~ 573 (758)
....||+|.++.++ |+..|...|.+|.+||||+...+ ..++. .|+||||++|+.||+.+|+++ +..+.
T Consensus 68 ~~~~~~~~~~~IP~P~~~~~~-~~~~~~~~f~~p~~yi~~~~~~~-e~~~~-~veYDmDeeD~~wL~~~N~~r--~~~~~ 142 (160)
T PF10513_consen 68 SKSKKKKEKKKIPTPSVRVVD-YEKPYSPPFKRPSSYIRFSEKSV-EDLDE-GVEYDMDEEDEEWLELLNKKR--KSDGL 142 (160)
T ss_pred hhcccccccccCCCCceEEec-CcCCCCCcccCCccccccccCCH-HHhcc-CcCCCCchHHHHHHHHHHHHh--hhcCC
Confidence 24569999999887 99999999999999999994111 11222 799999999999999999986 34567
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 004377 574 EHVSEDTFELIVDAFEKA 591 (758)
Q Consensus 574 ~~LSED~FE~IMDrFEK~ 591 (758)
.+||++.||.|||+|||+
T Consensus 143 ~~ls~~~FE~~md~lEke 160 (160)
T PF10513_consen 143 EPLSEEDFEIIMDRLEKE 160 (160)
T ss_pred CCCCHHHHHHHHHHHhCC
Confidence 899999999999999985
No 2
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.82 E-value=7e-21 Score=217.59 Aligned_cols=555 Identities=20% Similarity=0.118 Sum_probs=402.5
Q ss_pred eccCc-hhhHHHHHHHHHHHHHHhcccchhhHHhhhhhhhhhhhhccceeeccCCCccccceeeeecccCceeeeeeccc
Q 004377 158 LESSS-SGFLVSFLSSVLGCMRRATVELPRLASFLLSETISGVFSLRGIRFSWDPPIARTGMCRIFGTMQLIPMFSLDFS 236 (758)
Q Consensus 158 v~~s~-~~~~~~~l~~~l~~~r~~~~~~~~l~~f~~s~~~~~~fa~~g~~f~~~~~~~~~g~c~~~g~~~~~p~~svdfs 236 (758)
.|++| =+.|.......-+|+...-.+.+.+..|++.+..+.+|++++.++.-..++-.-+.|+.+|+ +.|+|+.+|+
T Consensus 134 nd~aSyek~l~~~~dl~~a~t~~em~~~~e~tk~~L~~~t~ei~~kr~e~~df~~~~~s~~~~~~~~~--~~P~~~~~~~ 211 (716)
T KOG2261|consen 134 NDEASYEKMLKLRRDLSRAYTILEMEKRREKTKRELLEKTSEISEKRFEMGDFEGEMSSEVEPERKGA--YKPLLSAPFA 211 (716)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHhhhhhHHHhhcchhhhhhhhhhhcccccccccccchhhhhc--cCccccCcch
Confidence 45555 45666667777888888888899999999999999999999999999999999999999999 8999999999
Q ss_pred CcchHHHHHHHHHHHHhcCccc-ccCCCC--CCCCCccccc---ccccccccccccccCCCCeEeecCccccccccccc-
Q 004377 237 AVPSCFMYIHHCMLVRFMRPPS-VNSSAS--EDDSSEEEDV---DYVCESKTVTPVVDNSVNKVALHPSVRSSKLAARN- 309 (758)
Q Consensus 237 a~p~~f~~~h~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~---d~s~~~~~~~~~v~~~~~~~~l~~~v~~~~~~g~~- 309 (758)
-+|..++..|.++.++..-.+| ...... .-.++...+. -...-.+ |..+..+..+.+|++++.+++++|+
T Consensus 212 i~~~s~~~~~~~l~~~~~~~~~~~~~~~y~r~k~~~~~~~~~~~~~~Q~~p---pv~~~~~yv~fr~r~~r~~~~trr~~ 288 (716)
T KOG2261|consen 212 IILLSPMDTMEALKLRVLKESFFSSKYDYWREKRKIEGGPKAQMTSQQPLP---PVFDADPYVCFRRRESRHSRKTRRSS 288 (716)
T ss_pred hhcCCHHHHHhhhhhhhhhhhhhhHHHHHHhhhccccCCchhhhhhhcCCC---CCCCCCCceecccccccchhhccccc
Confidence 9999999999999999998887 211111 1112222220 0001111 3446788889999999999999999
Q ss_pred ---chhccccchhhhhhhhhhccccccCCCCccccccccCcchhhhhhcccCCCCCCccccchhhhhccc--cccchhhh
Q 004377 310 ---VQYRSSLNSRAIQKRRSSLRRRRARNPSLIGSQKASGALVSDLTSCRKSSIPSSSAVSKSKLRSSLQ--HSSVLSIK 384 (758)
Q Consensus 310 ---~~~~~~l~~~~~q~rrss~r~~~~r~~~~~~~~k~~g~~~s~l~~~~~~~~~~~~~~s~~k~r~s~~--~s~~~~~~ 384 (758)
.||+......-.+.||.+.....+++-+..++...++....|+- +++ -.+-+++..+.+|+.. ..++.+=.
T Consensus 289 ~~s~~~een~~e~~~~~Rr~~~~~~~a~~l~~~~~k~e~~~~d~~~s-~~k---~r~~lt~~~~~rr~i~~~rrr~g~g~ 364 (716)
T KOG2261|consen 289 LNSEQEEENDAESVFAFRRRRGCLYYAQRLLEKAHKRENKKEDFDPD-KRK---YRTCLTKLKKPRRCIGFARRRAGRGG 364 (716)
T ss_pred cchhhhhhhcccchHHHhhhhhccccchhHHHhhcchhccccccCcc-hhh---hheeeeeccchhHHHHHHHHhhccCC
Confidence 89999999999999999999999998888777433333333322 222 3456677777776663 23333310
Q ss_pred cchhhhhhhhcccCcceeecceEEEecCceeeecCcEEEEEcCCCceEEEEEEecccccchhcccccccCCCccccccee
Q 004377 385 EVSSTVDSLMLDLDRSCCCVSILVMESDRCCRVEGANVILEMSHSKEWHLVVKKDGETRYSFKAQRIMRPSSFNRFTHAI 464 (758)
Q Consensus 385 e~~~~~~~~~~~~~s~~C~AN~Li~~~Dr~wRe~ga~VelE~~dg~~~rI~IkL~~it~~~~kaqq~i~~c~SNRenha~ 464 (758)
= ....+......|..+|.++.+....++|=++.+....+..+.+++|....+ ++.-.+++..|--+++...+..|++.
T Consensus 365 r-v~~dr~~~~~dd~~~~~~~~~~~~~~~~~q~~~~~~r~~~sn~k~~~~~~~-d~s~~~~~i~q~~~r~~~~~~~~l~d 442 (716)
T KOG2261|consen 365 R-VIPDRKPNNEDDFISSIDTTMTQSSLLRQQERTFSQRLSDSNLKEEQLASS-DLSQILSNIKQERLRPFQRRLINLQD 442 (716)
T ss_pred c-cccccCCcCcCCcccccccccccchhcccchhhhhhhccccccchhhcccc-ccccccccchheeecccccCccchhh
Confidence 0 111223445678889999999999999999999999999999999999999 99999999999779999999999999
Q ss_pred cccCCCCcccccCCccchhhhHHHHHHhhhccCCCCCCCCc-CCCeeeeecCCcCCCCCCCCCCCccEEeehhhhhHhhh
Q 004377 465 LWAGDDNWKLEFSNRQDWLDFKDLYKECSDRNAQVSVSKVI-PIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEVSRALA 543 (758)
Q Consensus 465 ~w~~~~~wklEfpdr~~~~~fKe~~eEesE~nlqaas~k~I-PtP~vr~Ve~Yd~lY~~~F~rP~sYIRfs~eEv~~ALd 543 (758)
.|. +.|..++.+...|.-|+....+|++....-.....+ +++....-..|.+.-+-.+..+.+|+-+...+...+..
T Consensus 443 ~~~--~E~~~r~~~~~~~dk~~~~~~~~~~~~s~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~s 520 (716)
T KOG2261|consen 443 VDN--DEWTSRKCDREVPDKFKDAYIDCYENTSDKQSSRVGPGITESQGQTPFSQNAPMQSQPLVSLQQLNASESLSASS 520 (716)
T ss_pred ccc--ccccchhhhhhcchhhccccccccccccccccccccCCccccCCCchHhhhhhhhccchhhhhhhccchhhhccc
Confidence 998 999999999999999999999999987766655666 44444333335544444455566788777655444444
Q ss_pred cCCCCcCC--ChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhhhcCCC-CCCCcHHHHHHHHHh-hChhHHHH
Q 004377 544 KRTANYDM--DSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSP-DDYSNEEAAVNLCLE-LGQKEVVL 619 (758)
Q Consensus 544 ~e~vEYDM--DEEDEeWLe~~Nkkr~~~sDg~~~LSED~FE~IMDrFEK~sy~sp-d~il~~eEa~ellke-Lg~~~v~k 619 (758)
....-||+ +++|..+|... ...|+..++.+|+..+... .++.....+-.+... ........
T Consensus 521 ~~~~~~~~~l~~~~~~~l~~q---------------~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~p~~a~~~~ 585 (716)
T KOG2261|consen 521 NSIALYDSTLNDEDDKYLDRQ---------------RAAFGASLDVFEKYHLHVSRDDKPDVLGMNNVNGSYPPSAESKE 585 (716)
T ss_pred cchhhhhhhhcCccchhhHHH---------------HHHHhhhhhcchhhccccchhcccccccCCCccccccCcccccc
Confidence 44566764 44455555443 3467778888888553221 111100000000000 12345677
Q ss_pred HHHHHHHHHHHhhCCcceeecccCCCCCCCCCCCCcccccccccccCCCC-CCCCCCccccchhhhhhh-hHHHHHHHHH
Q 004377 620 AVYNHWKQKRKQKRAALLRVFQGRQPKKPSLIPKPALRKRRSFKRQASQP-GRGKPPVVLLPEVVTQQD-ALEEQNAMRR 697 (758)
Q Consensus 620 aVYeYWk~KR~k~GkPLLRrFq~~~ekdDs~~~dPYVcFRRREkRQtRKT-RR~D~~s~~~~~~~aqrd-~~ee~~~~~r 697 (758)
.+.+||..+|.....|+..-++..+.+| ..|-...++.++.+-..+ ++..+.+ +++++.-. +.++..+...
T Consensus 586 ~~~d~~~~~~~~~~~~~~~~~~~v~~~d----s~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~a~~~~~~~~~~~ 658 (716)
T KOG2261|consen 586 LLSDNWLAKRAQRSSPLNSDSQTVSVKD----SKPHFRKKHSFKALGTELGGKLPQES---PRLVAASAVAPVEEDAPMN 658 (716)
T ss_pred cccccchhhhhhcCCCcccccccccccc----ccceecccccccccccccccccCCCc---hhhhhhhhcchhhhhhhhc
Confidence 7889999999999999998888877766 244444455666654433 4433333 44444333 3333358888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc
Q 004377 698 VEEAKASAKRSLEEAVLKRQRAQLLMQNADLATYKATMALRIAEAAQVAES 748 (758)
Q Consensus 698 l~eA~~~A~~a~e~a~lkR~RAQ~ll~~AdLaiyKa~~al~~aeA~~~s~~ 748 (758)
.+++..-|..+.++|..++.+|+.+-.+++|+.++++-++ +|||+.-..+
T Consensus 659 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 708 (716)
T KOG2261|consen 659 GEEATRLAAPSPETALRDAARAQKLDENAKLASSEAVSSI-IAEAIESEQS 708 (716)
T ss_pred cccchhhcccChhHHHHHHHHHHHHHhhccccchhHHHHH-HHHHHhhhhh
Confidence 9999999999999999999999999999999999999999 9999976544
No 3
>KOG2261 consensus Polycomb enhancer protein, EPC [Transcription]
Probab=99.63 E-value=1.3e-16 Score=182.94 Aligned_cols=179 Identities=21% Similarity=0.220 Sum_probs=138.6
Q ss_pred CCCCCCCCCccEEeehhhhhHhhhcCCCCcCCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhhhcCCCCCC
Q 004377 520 NTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCSPDDY 599 (758)
Q Consensus 520 Y~~~F~rP~sYIRfs~eEv~~ALd~e~vEYDMDEEDEeWLe~~Nkkr~~~sDg~~~LSED~FE~IMDrFEK~sy~spd~i 599 (758)
|+.+|+.|...|+...- .|+.+.++||||++||.||+. +. .+.+..||.|+|++|+.+...+
T Consensus 1 y~~~~k~~r~~~~~~~~----~l~~~~p~yd~D~~de~~~s~---~~--------~s~~~~~e~~~dR~e~~s~~~~--- 62 (716)
T KOG2261|consen 1 YPKAAKMPRQLIHGQPI----WLDREKPRYDHDSEDEDFLSV---QM--------ESKPLKFERMRDRLEKCSSHQK--- 62 (716)
T ss_pred CCcccccchhhhccccc----ccCCCCCcccccchhHHHhhh---cc--------cccchhHHHHhcccccCCccce---
Confidence 67889999998888763 277889999999999999998 22 6889999999999999985443
Q ss_pred CcHHHHHHHHHhhChhHHHHHHHHHHHHHHHhhCCc-ceeecccCCCCCCCCCCCCcccccc-cccccCCCCCCCCCCcc
Q 004377 600 SNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQKRAA-LLRVFQGRQPKKPSLIPKPALRKRR-SFKRQASQPGRGKPPVV 677 (758)
Q Consensus 600 l~~eEa~ellkeLg~~~v~kaVYeYWk~KR~k~GkP-LLRrFq~~~ekdDs~~~dPYVcFRR-REkRQtRKTRR~D~~s~ 677 (758)
+..++++..+.+ ++.....||+||.+||...-.| |++.... -.++++.+++||+.||| .|+||+||||++|+.+|
T Consensus 63 i~l~edk~~l~~--dd~~~v~~~e~~veK~~~~e~~~L~p~v~~-~~~~~~~s~~py~~~rr~tekmqtrkn~~nd~aSy 139 (716)
T KOG2261|consen 63 IYLEEDKKDLDE--DDQRSVEVYEYWVEKREEKEVPSLIPPVKT-EKRDGSASNKPYVAFRRRTEKMQTRKNRKNDEASY 139 (716)
T ss_pred ecchhhhhcccc--ccceeeeeeehhhhhhhhhccccccCcccc-ccCCccccCCchhhhhhhhhccccccccccchHHH
Confidence 333455665554 5677889999999999999776 6654433 45667788999999987 59999999999999998
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 004377 678 LLPEVVTQQDALEEQNAMRRVEEAKASAKRSLEEAVLKRQRAQLLMQNADLATYKATM 735 (758)
Q Consensus 678 ~~~~~~aqrd~~ee~~~~~rl~eA~~~A~~a~e~a~lkR~RAQ~ll~~AdLaiyKa~~ 735 (758)
+ .+++++...+.|..-+|+ +..|+-.+..|-.-.+.|...++
T Consensus 140 e---------------k~l~~~~dl~~a~t~~em-~~~~e~tk~~L~~~t~ei~~kr~ 181 (716)
T KOG2261|consen 140 E---------------KMLKLRRDLSRAYTILEM-EKRREKTKRELLEKTSEISEKRF 181 (716)
T ss_pred H---------------HHHHHHHhhhHHHHHHHH-HHhhhhhHHHhhcchhhhhhhhh
Confidence 5 778888888877776776 56666666665554555554443
No 4
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=98.79 E-value=2.7e-09 Score=122.44 Aligned_cols=113 Identities=29% Similarity=0.460 Sum_probs=94.0
Q ss_pred cchhhhHHHHHHhhhccCCCC-CCCCcCCCeeeeecCCcCCCCCCCCCCCccEEeehhh--------hhHhhhcCCCCcC
Q 004377 480 QDWLDFKDLYKECSDRNAQVS-VSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDE--------VSRALAKRTANYD 550 (758)
Q Consensus 480 ~~~~~fKe~~eEesE~nlqaa-s~k~IPtP~vr~Ve~Yd~lY~~~F~rP~sYIRfs~eE--------v~~ALd~e~vEYD 550 (758)
..++.|.+.++++||.++|.+ +...||+|.|+++...-+ -...|.+|+.||..+..+ .++++.++.|.||
T Consensus 132 ~~y~~~~D~wk~ewekgvQvpaspd~lpqp~v~~dse~v~-~~~~fs~pkkyivc~~~~~~e~~yn~~~~~lae~tcryd 210 (893)
T KOG0954|consen 132 DEYLDFADPWKQEWEKGVQVPASPDTLPQPSVRVDSEDVQ-PETDFSRPKKYIVCSDGEVPELGYNLLIKDLAESTCRYD 210 (893)
T ss_pred cceeecCCccchhhhccccccCCCCcCCCcceeccchhcc-hhhhhcCCcceEEeCCCCCcccchhhhHHHHhhhhhhcc
Confidence 556778888888999999986 478999999988753322 236899999999998733 2567888899999
Q ss_pred CChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhhhcCC
Q 004377 551 MDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFCS 595 (758)
Q Consensus 551 MDEEDEeWLe~~Nkkr~~~sDg~~~LSED~FE~IMDrFEK~sy~s 595 (758)
+|..|.+||+.+|.++ .-.|...|.+-+||+||..||..+|.+
T Consensus 211 id~~d~awL~~~n~e~--~~~G~~~l~~~~~eRiieelE~~c~kq 253 (893)
T KOG0954|consen 211 IDDMDPAWLQLVNEER--AEMGSLELDEGTFERIIEELERRCKKQ 253 (893)
T ss_pred cccccHHHHHHhcchH--HhhCCcccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 346788999999999999999988543
No 5
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=98.30 E-value=6.6e-07 Score=107.85 Aligned_cols=168 Identities=21% Similarity=0.179 Sum_probs=109.6
Q ss_pred ecCceeeecCcEEEEEcCCCceEEEEE--EecccccchhcccccccCCCcccccceecccCCCCccccc--CCccchhhh
Q 004377 410 ESDRCCRVEGANVILEMSHSKEWHLVV--KKDGETRYSFKAQRIMRPSSFNRFTHAILWAGDDNWKLEF--SNRQDWLDF 485 (758)
Q Consensus 410 ~~Dr~wRe~ga~VelE~~dg~~~rI~I--kL~~it~~~~kaqq~i~~c~SNRenha~~w~~~~~wklEf--pdr~~~~~f 485 (758)
..|+=+=.+.-.+++++ +|+.++|++ ++..+..+..+.+ ++++|.+|+.|-..+-..-+.-..++ +.+.-...+
T Consensus 29 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (1051)
T KOG0955|consen 29 RNDRFYAQATRMVELDT-EGRVFQISIFPPLGKVNEDLITTE-EIFPNKSVHVNKNWERPSFDIQEKENKNNERPTLNKL 106 (1051)
T ss_pred cCceEEecccccccccc-ccceeecccCCcccccchhhcccc-cccccccccccccccCCccchhhhccccccccchhhc
Confidence 45555666777888999 999999999 8999999999999 99999999996443322222222222 111111111
Q ss_pred HHHHHHhhhccCCCC-CCCCcCCCeeeeecCCcCCCCCCCCCCCccEEeehhhhhHhhhcCCCCcCCChhhHHHHHHhhh
Q 004377 486 KDLYKECSDRNAQVS-VSKVIPIPGVCEVLGYEDSNTVPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFNN 564 (758)
Q Consensus 486 Ke~~eEesE~nlqaa-s~k~IPtP~vr~Ve~Yd~lY~~~F~rP~sYIRfs~eEv~~ALd~e~vEYDMDEEDEeWLe~~Nk 564 (758)
.++..+.+ .....|.+.++.++.+. -.....+|..|++++.+.- ..++. .++|||||+|..||..+|.
T Consensus 107 -------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~-~~~~~-e~~y~~de~d~~wl~~~n~ 175 (1051)
T KOG0955|consen 107 -------SKDISPNAYTIPRSPQHKVREFELLR--PMDAPPRPNFYYDEIEKSK-ETLDE-EVEYDLDEEDYSWLDIMNE 175 (1051)
T ss_pred -------ccccCccccccccChhhhheeccccc--cccCCCCCCcchhhhccch-hhhcc-ccccchHHHHHHHHhhhhH
Confidence 11111110 01223333333333332 1245667888887776321 23444 6899999999999999998
Q ss_pred hhcccccCCCCCCHHHHHHHHHHHHhhh
Q 004377 565 EFVTENELHEHVSEDTFELIVDAFEKAY 592 (758)
Q Consensus 565 kr~~~sDg~~~LSED~FE~IMDrFEK~s 592 (758)
.+. ..+...++.+.||.+||++||++
T Consensus 176 ~~~--~~~~~~v~~~~~~~~~dr~eke~ 201 (1051)
T KOG0955|consen 176 LRT--RNGVFDVSIDTFELLVDRLEKES 201 (1051)
T ss_pred HHh--hcCCccccccchhhhhhhHHHHH
Confidence 773 45678999999999999999977
No 6
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.40 E-value=0.0022 Score=72.59 Aligned_cols=43 Identities=42% Similarity=0.800 Sum_probs=38.1
Q ss_pred CCCcCCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhhhc
Q 004377 546 TANYDMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYF 593 (758)
Q Consensus 546 ~vEYDMDEEDEeWLe~~Nkkr~~~sDg~~~LSED~FE~IMDrFEK~sy 593 (758)
.|.|||||-|+-||.-+|+..- ..++|++-||+||++||+++|
T Consensus 130 ~v~YdlDe~D~m~l~Ylne~~~-----~e~vS~e~fEii~t~lE~EWf 172 (669)
T COG5141 130 SVIYDLDEYDTMWLRYLNESAI-----DENVSEEAFEIIVTRLEKEWF 172 (669)
T ss_pred ceeecccchhHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHH
Confidence 5899999999999999997542 357999999999999999984
No 7
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=73.47 E-value=2.9 Score=50.44 Aligned_cols=35 Identities=34% Similarity=0.447 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHHhhC-Cccee
Q 004377 602 EEAAVNLCLELGQKEVVLAVYNHWKQKRKQKR-AALLR 638 (758)
Q Consensus 602 ~eEa~ellkeLg~~~v~kaVYeYWk~KR~k~G-kPLLR 638 (758)
++.+.+.+. -++.++-+||+||+.||+..+ +|||+
T Consensus 489 ~~diae~l~--~~e~~vs~iynywklkrks~~n~~lip 524 (893)
T KOG0954|consen 489 NEDIAELLS--MPEFAVSAIYNYWKLKRKSRFNKELIP 524 (893)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHhhhccCCCcCCC
Confidence 333444443 245688999999999999986 99996
No 8
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=39.39 E-value=18 Score=40.23 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCCCCccEEeehhhhhHhhhcCCCCcCCChhhHHHHHHhh--------h------hh---cccccCCCCCCHHHHHHH
Q 004377 522 VPFCRPDSYISVNVDEVSRALAKRTANYDMDSEDEEWLKKFN--------N------EF---VTENELHEHVSEDTFELI 584 (758)
Q Consensus 522 ~~F~rP~sYIRfs~eEv~~ALd~e~vEYDMDEEDEeWLe~~N--------k------kr---~~~sDg~~~LSED~FE~I 584 (758)
+.|.+|-.|+|.+-+|-+ +-.|-|+|-+.+..|+..-+ . +. +-.=.|..++=..+|..|
T Consensus 4 D~~gR~~~~LRiSvTdrC----NfrC~YCm~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eI 79 (322)
T COG2896 4 DRFGRPVRYLRISVTDRC----NFRCTYCMPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEI 79 (322)
T ss_pred cccCCEeceEEEEEecCc----CCcccccCCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHH
Confidence 568999999999986543 23799999999777765310 0 00 001124566667777777
Q ss_pred HHHHHh
Q 004377 585 VDAFEK 590 (758)
Q Consensus 585 MDrFEK 590 (758)
+.++-+
T Consensus 80 i~~l~~ 85 (322)
T COG2896 80 IARLAR 85 (322)
T ss_pred HHHHhh
Confidence 777775
No 9
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=35.83 E-value=1.1e+02 Score=39.04 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHhh-CCcceeecccC
Q 004377 615 KEVVLAVYNHWKQKRKQK-RAALLRVFQGR 643 (758)
Q Consensus 615 ~~v~kaVYeYWk~KR~k~-GkPLLRrFq~~ 643 (758)
..++..|..||-.||..+ |.||++++|..
T Consensus 467 ~~~~~~i~~~w~~kR~~r~g~pLl~~lq~~ 496 (1051)
T KOG0955|consen 467 PQFMDRICKYWYLKRLSRNGAPLLGRLQSL 496 (1051)
T ss_pred chhhhhhhhhHHHHHHhhCCcchhhhhhhh
Confidence 458999999999999866 89999888754
No 10
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=22.87 E-value=94 Score=29.22 Aligned_cols=39 Identities=15% Similarity=0.342 Sum_probs=28.6
Q ss_pred CChhhH-HHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhhhcC
Q 004377 551 MDSEDE-EWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAYFC 594 (758)
Q Consensus 551 MDEEDE-eWLe~~Nkkr~~~sDg~~~LSED~FE~IMDrFEK~sy~ 594 (758)
||||+. ++|.....+.. ...||+.+++.+|+.|++..|.
T Consensus 1 lddd~YR~~L~~~~Gk~S-----~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 1 LDDDTYRALLQRVTGKSS-----SKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred CCHHHHHHHHHHHhChhh-----HHHCCHHHHHHHHHHHHHccCc
Confidence 677776 45555443331 3589999999999999998874
Done!