Query 004377
Match_columns 758
No_of_seqs 212 out of 362
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 23:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b19_A PEPA1; toxin, toxin apo 30.1 25 0.00084 25.8 1.8 17 615-631 13-29 (30)
2 3nnf_A CURA; non-HAEM Fe(II)/a 22.8 49 0.0017 35.6 3.3 39 573-611 22-60 (344)
3 3s0r_A De novo designed helica 19.4 1.5E+02 0.0053 21.2 4.2 19 719-737 10-28 (30)
4 3dvk_B Voltage-dependent R-typ 15.2 74 0.0025 22.1 1.7 14 618-631 9-22 (23)
5 2ic9_A Nucleocapsid protein; h 11.0 8.6E+02 0.029 22.0 8.7 49 694-742 24-75 (96)
6 2b5u_A Colicin E3; high resolu 10.9 6.1E+02 0.021 29.0 8.2 27 702-728 309-335 (551)
7 2kt9_A Probable 30S ribosomal 9.9 3.2E+02 0.011 25.5 4.7 48 578-637 45-93 (116)
8 2k48_A Nucleoprotein; viral pr 9.3 1E+03 0.036 21.8 9.1 47 694-740 54-103 (107)
9 1b0n_B Protein (SINI protein); 9.3 1.7E+02 0.0057 24.0 2.3 37 550-592 7-43 (57)
10 3dve_B Voltage-dependent N-typ 8.9 65 0.0022 22.4 -0.2 14 618-631 8-21 (23)
No 1
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=30.12 E-value=25 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHh
Q 004377 615 KEVVLAVYNHWKQKRKQ 631 (758)
Q Consensus 615 ~~v~kaVYeYWk~KR~k 631 (758)
...+.+.|.||.+.|.+
T Consensus 13 sGcivalF~hWL~~r~~ 29 (30)
T 4b19_A 13 SGCAIAFFSYWLSRRNT 29 (30)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 45788999999999865
No 2
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=22.80 E-value=49 Score=35.65 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHh
Q 004377 573 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLE 611 (758)
Q Consensus 573 ~~~LSED~FE~IMDrFEK~sy~spd~il~~eEa~ellke 611 (758)
..+|++++.|.++..||+..|+-..++++++|+.++..+
T Consensus 22 ~~~l~~~qve~~~~~fE~eGYLvlk~vFs~eEv~~l~~e 60 (344)
T 3nnf_A 22 SNAMNREQVEQLKQEYEEKGYCQIKKIFDFSAIKTIQKT 60 (344)
T ss_dssp ---CCSHHHHHHHHHHHHHSEEEETTCSCHHHHHHHHHH
T ss_pred cCcCCHHHHHHHHhhhccCceEEEcCCCCHHHHHHHHHH
Confidence 358999999999999999999988899999887776653
No 3
>3s0r_A De novo designed helical assembly; interacts with single walled nanotube (SWNT), de novo protei; 2.45A {Artificial gene}
Probab=19.41 E-value=1.5e+02 Score=21.20 Aligned_cols=19 Identities=42% Similarity=0.378 Sum_probs=10.9
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 004377 719 AQLLMQNADLATYKATMAL 737 (758)
Q Consensus 719 AQ~ll~~AdLaiyKa~~al 737 (758)
||.-+++|.||+.-|+-||
T Consensus 10 aqqalekaqlalqaarqal 28 (30)
T 3s0r_A 10 AQQALEKAQLALQAARQAL 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455556666666665554
No 4
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=15.22 E-value=74 Score=22.11 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHh
Q 004377 618 VLAVYNHWKQKRKQ 631 (758)
Q Consensus 618 ~kaVYeYWk~KR~k 631 (758)
+--|+|||+..|.+
T Consensus 9 ~llI~d~~r~~k~r 22 (23)
T 3dvk_B 9 AMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 45789999988765
No 5
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=11.00 E-value=8.6e+02 Score=21.96 Aligned_cols=49 Identities=18% Similarity=0.292 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 004377 694 AMRRVEEAKASAKR---SLEEAVLKRQRAQLLMQNADLATYKATMALRIAEA 742 (758)
Q Consensus 694 ~~~rl~eA~~~A~~---a~e~a~lkR~RAQ~ll~~AdLaiyKa~~al~~aeA 742 (758)
+..||.+|...+.. -++...+.++++-...+++-|+=+|-.||-.+|+-
T Consensus 24 A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~~~ 75 (96)
T 2ic9_A 24 TRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELKRELADLIAAQ 75 (96)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 66777777766653 36667788888888888889999998887777643
No 6
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=10.95 E-value=6.1e+02 Score=28.99 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 004377 702 KASAKRSLEEAVLKRQRAQLLMQNADL 728 (758)
Q Consensus 702 ~~~A~~a~e~a~lkR~RAQ~ll~~AdL 728 (758)
+..++|=+|.|.++=++|+..|..|+.
T Consensus 309 ew~~~hp~~~Aer~~e~a~ael~~a~k 335 (551)
T 2b5u_A 309 EWDATHPVEAAERNYERARAELNQANE 335 (551)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444445544444443
No 7
>2kt9_A Probable 30S ribosomal protein PSRP-3; structural genomics, northeast structural genomics consortium (NESG), target SGR46, PSI-2; NMR {Synechocystis SP}
Probab=9.95 E-value=3.2e+02 Score=25.48 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHhhChhHHHHHHHHHHHHHHHhh-CCcce
Q 004377 578 EDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYNHWKQKRKQK-RAALL 637 (758)
Q Consensus 578 ED~FE~IMDrFEK~sy~spd~il~~eEa~ellkeLg~~~v~kaVYeYWk~KR~k~-GkPLL 637 (758)
.|..|.|=..||.....+ ..+...+|. -+.+|-+||++++.+. +.|+-
T Consensus 45 ~DAWe~LK~eLEsK~WIs------e~e~i~lLN------~~TeiIN~WQe~~~~~k~~~~~ 93 (116)
T 2kt9_A 45 ADAWQQLKDELEAKHWIA------EADRINVLN------QATEVINFWQDLKNQNKQISMA 93 (116)
T ss_dssp SCHHHHHHHHHHHSTTSC------HHHHHHHHH------HHHHHHHHHHHHHHHTCCCCHH
T ss_pred ccHHHHHHHHHhcCCCCC------HHHHHHHHH------HHHHHHHHHHhhhhccccCCHH
Confidence 477788888888766533 233444443 4678999999999854 45543
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=9.28 E-value=1e+03 Score=21.79 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004377 694 AMRRVEEAKASAKR---SLEEAVLKRQRAQLLMQNADLATYKATMALRIA 740 (758)
Q Consensus 694 ~~~rl~eA~~~A~~---a~e~a~lkR~RAQ~ll~~AdLaiyKa~~al~~a 740 (758)
+..||.+|...+.. -++...+.++++-...+++-|+=.|-.||-.+|
T Consensus 54 ArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 54 ARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666665543 356667778888888888899999988777666
No 9
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=9.27 E-value=1.7e+02 Score=24.04 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=25.7
Q ss_pred CCChhhHHHHHHhhhhhcccccCCCCCCHHHHHHHHHHHHhhh
Q 004377 550 DMDSEDEEWLKKFNNEFVTENELHEHVSEDTFELIVDAFEKAY 592 (758)
Q Consensus 550 DMDEEDEeWLe~~Nkkr~~~sDg~~~LSED~FE~IMDrFEK~s 592 (758)
.+++-|++||.-+.+-. ..-+|-+++..++....+.+
T Consensus 7 ~~~~~d~ewl~LI~~Ak------~lGlsleEIrefL~l~~~~~ 43 (57)
T 1b0n_B 7 EHFELDQEWVELMVEAK------EANISPEEIRKYLLLNKKSA 43 (57)
T ss_dssp --CCCCHHHHHHHHHHH------HTTCCHHHHHHHHHHC----
T ss_pred hhhHHHHHHHHHHHHHH------HcCCCHHHHHHHHHHhccCC
Confidence 46788999999997644 24699999999998776654
No 10
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=8.94 E-value=65 Score=22.37 Aligned_cols=14 Identities=21% Similarity=0.655 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHh
Q 004377 618 VLAVYNHWKQKRKQ 631 (758)
Q Consensus 618 ~kaVYeYWk~KR~k 631 (758)
+--|+|||++.|.+
T Consensus 8 allI~d~~r~~k~~ 21 (23)
T 3dve_B 8 ALMIFDFYKQNKTS 21 (26)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhhc
Confidence 45789999887654
Done!