Query 004377
Match_columns 758
No_of_seqs 212 out of 362
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 23:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004377.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004377hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 18.5 95 0.0069 24.4 5.7 42 573-616 21-62 (80)
2 d2jdqd1 d.361.1.1 (D:688-756) 14.2 26 0.0019 27.6 1.0 30 377-415 17-46 (69)
3 d1dcja_ d.68.3.3 (A:) SirA {Es 10.6 83 0.006 24.4 3.1 46 394-440 27-81 (81)
4 d1vk9a_ c.97.1.3 (A:) Hypothet 8.2 20 0.0015 32.3 -1.8 40 182-221 81-126 (147)
5 d2gf5a2 a.77.1.4 (A:2-83) FADD 7.7 4.5E+02 0.033 20.1 7.7 63 550-624 13-81 (82)
6 d1vlya1 b.44.2.1 (A:244-325) H 7.0 2.9E+02 0.021 21.5 5.1 37 407-443 22-60 (82)
7 d1b8wa_ g.9.1.1 (A:) Defensin- 6.7 95 0.0069 21.9 1.6 28 207-234 1-31 (42)
8 d1qv0a_ a.39.1.5 (A:) Calcium- 5.8 2.9E+02 0.021 22.7 4.8 49 571-627 119-175 (189)
9 d1b0na1 a.34.1.1 (A:74-108) Si 5.7 2E+02 0.015 19.8 2.8 26 555-586 2-27 (35)
10 d1wrka1 a.39.1.5 (A:4-85) Trop 5.5 5.4E+02 0.039 19.2 5.8 38 575-612 8-45 (82)
No 1
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=18.51 E-value=95 Score=24.38 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHhhChhH
Q 004377 573 HEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKE 616 (758)
Q Consensus 573 ~~~LSED~FE~IMDrFEK~sy~spd~il~~eEa~ellkeLg~~~ 616 (758)
...+|+++.|.|-..||+..+.++ ..+.++..+++.+++...
T Consensus 21 Rt~ft~~Q~~~L~~~fe~~~~~~~--~p~~~~~~~la~~~gl~~ 62 (80)
T d1wh7a_ 21 RTKFTAEQKEKMLAFAERLGWRIQ--KHDDVAVEQFCAETGVRR 62 (80)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSCCC--SSTTHHHHHHHHHSCCCH
T ss_pred cccCCHHHHHHHHHHHHHhccccc--CcCHHHHHHHHHHHCCCH
Confidence 357999999999999999886543 344567778888876443
No 2
>d2jdqd1 d.361.1.1 (D:688-756) Polymerase basic protein 2, BP2 {Influenza A virus [TaxId: 11320]}
Probab=14.23 E-value=26 Score=27.58 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=22.5
Q ss_pred cccchhhhcchhhhhhhhcccCcceeecceEEEecCcee
Q 004377 377 HSSVLSIKEVSSTVDSLMLDLDRSCCCVSILVMESDRCC 415 (758)
Q Consensus 377 ~s~~~~~~e~~~~~~~~~~~~~s~~C~AN~Li~~~Dr~w 415 (758)
--|+..|+|++.-..+ =.|||||-|||--|
T Consensus 17 yGpalsIneLs~L~kG---------EkANvligqg~~v~ 46 (69)
T d2jdqd1 17 YGPALSINELSNLAKG---------EKANVLIGQGDVVL 46 (69)
T ss_dssp GCSCBCTTGGGGSCTT---------CEEEEEEETTEEEE
T ss_pred cCccccHHHHhhcCcc---------ccccEEEeCCCEEE
Confidence 4678889996655444 36999999999765
No 3
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
Probab=10.62 E-value=83 Score=24.36 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=31.4
Q ss_pred hcccCcceeecceEEEecCce--------eeecCcEE-EEEcCCCceEEEEEEecc
Q 004377 394 MLDLDRSCCCVSILVMESDRC--------CRVEGANV-ILEMSHSKEWHLVVKKDG 440 (758)
Q Consensus 394 ~~~~~s~~C~AN~Li~~~Dr~--------wRe~ga~V-elE~~dg~~~rI~IkL~~ 440 (758)
++.++...-..-|.|+-.|.+ .+..|..| .+|- +|..|++.|++.|
T Consensus 27 k~al~~~~~G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~~-~~~~~~~~I~Kgg 81 (81)
T d1dcja_ 27 RKTVRNMQPGETLLIIADDPATTRDIPGFCTFMEHELVAKET-DGLPYRYLIRKGG 81 (81)
T ss_dssp HHHHHHCCTTCCEEEEECSTTHHHHHHHHHHHTTCEEEEEEC-SSSSEEEEEECCC
T ss_pred HHHHHhCCCCCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEEE-eCCEEEEEEEECC
Confidence 344444444555666666765 67889987 5555 8889999997654
No 4
>d1vk9a_ c.97.1.3 (A:) Hypothetical protein TM1506 {Thermotoga maritima [TaxId: 2336]}
Probab=8.23 E-value=20 Score=32.31 Aligned_cols=40 Identities=20% Similarity=0.405 Sum_probs=31.6
Q ss_pred ccchhhHHhhhhhhhhhhhhccceeeccC---CCc---cccceeee
Q 004377 182 VELPRLASFLLSETISGVFSLRGIRFSWD---PPI---ARTGMCRI 221 (758)
Q Consensus 182 ~~~~~l~~f~~s~~~~~~fa~~g~~f~~~---~~~---~~~g~c~~ 221 (758)
..+..+.+++.|++-...+..+||.|--+ |.+ .++|||-+
T Consensus 81 ggvk~VyA~vISe~Al~lL~~~gI~~sY~e~VP~I~NR~~Tg~CPl 126 (147)
T d1vk9a_ 81 MKPDHIHAKVISKPALKLMNEYGQSFSYDEKIPFVLGKDGKSMCPF 126 (147)
T ss_dssp HCCSEEEEEEEEHHHHHHHHHTTCCEEEEEEESSCBCSSSSSBCHH
T ss_pred cChhheehhhhcHHHHHHHHHcCceeecccCcceeEcCCCCCCCcH
Confidence 36788999999999999999999987652 222 45699965
No 5
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.73 E-value=4.5e+02 Score=20.11 Aligned_cols=63 Identities=14% Similarity=0.116 Sum_probs=44.0
Q ss_pred CCChhhHHHHHHhhhhhcccccCCCCCCHHHHH------HHHHHHHhhhcCCCCCCCcHHHHHHHHHhhChhHHHHHHHH
Q 004377 550 DMDSEDEEWLKKFNNEFVTENELHEHVSEDTFE------LIVDAFEKAYFCSPDDYSNEEAAVNLCLELGQKEVVLAVYN 623 (758)
Q Consensus 550 DMDEEDEeWLe~~Nkkr~~~sDg~~~LSED~FE------~IMDrFEK~sy~spd~il~~eEa~ellkeLg~~~v~kaVYe 623 (758)
+|+++|.+=|+-+-.. .|+....| .++..||+.-..+++++. ....++..++..++++.|=+
T Consensus 13 ~L~~~dl~~lKfl~~d---------~i~~~~le~~~~~l~lf~~Le~~~~l~~~nl~---~L~~lL~~i~R~DL~~~i~~ 80 (82)
T d2gf5a2 13 SLSSSELTELKYLCLG---------RVGKRKLERVQSGLDLFSMLLEQNDLEPGHTE---LLRELLASLRRHDLLRRVDD 80 (82)
T ss_dssp TSCHHHHHHHHHHTTT---------TSCHHHHHHCCSSHHHHHHHHHTTSCCSSCCH---HHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHh---------hcCHHHHHccCCHHHHHHHHHHcCCCCCccHH---HHHHHHHHcChHHHHHHHHH
Confidence 5788888877765432 35554444 366778888888887664 35577777888899998877
Q ss_pred H
Q 004377 624 H 624 (758)
Q Consensus 624 Y 624 (758)
|
T Consensus 81 y 81 (82)
T d2gf5a2 81 F 81 (82)
T ss_dssp H
T ss_pred c
Confidence 6
No 6
>d1vlya1 b.44.2.1 (A:244-325) Hypothetical protein YgfZ, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.02 E-value=2.9e+02 Score=21.47 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=27.8
Q ss_pred EEEecCceeeecCcEEEEE-cCCCceEEEEE-Eeccccc
Q 004377 407 LVMESDRCCRVEGANVILE-MSHSKEWHLVV-KKDGETR 443 (758)
Q Consensus 407 Li~~~Dr~wRe~ga~VelE-~~dg~~~rI~I-kL~~it~ 443 (758)
|-.+.+-+||-.|..|..- ..||..|-++| +.+....
T Consensus 22 le~~~~~~wr~~G~Vv~a~~~~dg~~~~laVL~~d~~~~ 60 (82)
T d1vlya1 22 LELKMGENWRRTGTVLAAVKLEDGQVVVQVVMNNDMEPD 60 (82)
T ss_dssp EEEEETTEEEEECEEEEEEECTTSCEEEEEEEETTCCTT
T ss_pred eEeecCCCCccccEEEEEEECCCCcEEEEEEeCCCcccC
Confidence 4455677999999999866 46889999988 6655443
No 7
>d1b8wa_ g.9.1.1 (A:) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-1 [TaxId: 9258]}
Probab=6.69 E-value=95 Score=21.92 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.3
Q ss_pred eccCCCc---cccceeeeecccCceeeeeec
Q 004377 207 FSWDPPI---ARTGMCRIFGTMQLIPMFSLD 234 (758)
Q Consensus 207 f~~~~~~---~~~g~c~~~g~~~~~p~~svd 234 (758)
|+|++|- .-.|+|+--+.-++.-+|-.|
T Consensus 1 fvqhrprdcesingvcrhkdtvncreiflad 31 (42)
T d1b8wa_ 1 FVQHRPRDCESINGVCRHKDTVNCREIFLAD 31 (42)
T ss_dssp CCCCCCCCSGGGTCEEEETTCSSSCBCTTCC
T ss_pred CCccCCccchhhcceeecCCcccHHHHHHHH
Confidence 7787775 456999999999998888665
No 8
>d1qv0a_ a.39.1.5 (A:) Calcium-regulated photoprotein {Hydrozoa (Obelia longissima), obelin [TaxId: 32570]}
Probab=5.84 E-value=2.9e+02 Score=22.73 Aligned_cols=49 Identities=8% Similarity=0.047 Sum_probs=31.0
Q ss_pred cCCCCCCHHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHhh--------ChhHHHHHHHHHHHH
Q 004377 571 ELHEHVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLEL--------GQKEVVLAVYNHWKQ 627 (758)
Q Consensus 571 Dg~~~LSED~FE~IMDrFEK~sy~spd~il~~eEa~ellkeL--------g~~~v~kaVYeYWk~ 627 (758)
++...||.++|..+|..+-- .++.+++..++..+ ...++++.++.||..
T Consensus 119 d~~G~is~~E~~~~l~~~g~--------~~~~~~~~~lf~~~D~d~dG~Is~~EF~~~~~~~~~~ 175 (189)
T d1qv0a_ 119 DGSGTITLDEWKAYGKISGI--------SPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFWYT 175 (189)
T ss_dssp ---CEECHHHHHHHHHHHSS--------CCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHHTT
T ss_pred CCCCcccchhhHHHHHhcCC--------CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHhCCC
Confidence 34568999999998876611 13345556666533 346799999999864
No 9
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=5.67 E-value=2e+02 Score=19.85 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=19.6
Q ss_pred hHHHHHHhhhhhcccccCCCCCCHHHHHHHHH
Q 004377 555 DEEWLKKFNNEFVTENELHEHVSEDTFELIVD 586 (758)
Q Consensus 555 DEeWLe~~Nkkr~~~sDg~~~LSED~FE~IMD 586 (758)
|.+|-+.+...+ ..-+|-++|-..++
T Consensus 2 DseW~~lVkeAM------~SGvSK~QFrEfle 27 (35)
T d1b0na1 2 DSEWEKLVRDAM------TSGVSKKQFREFLD 27 (35)
T ss_dssp CHHHHHHHHHHH------HSCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHH------HccCCHHHHHHHHH
Confidence 678988887655 24699999987665
No 10
>d1wrka1 a.39.1.5 (A:4-85) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=5.47 E-value=5.4e+02 Score=19.20 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHhhhcCCCCCCCcHHHHHHHHHhh
Q 004377 575 HVSEDTFELIVDAFEKAYFCSPDDYSNEEAAVNLCLEL 612 (758)
Q Consensus 575 ~LSED~FE~IMDrFEK~sy~spd~il~~eEa~ellkeL 612 (758)
+||+++.+.+-+.|+..-..+.+-.++..++...+..+
T Consensus 8 ~ls~eq~~~~~~~F~~fD~d~~~G~I~~~el~~~l~~l 45 (82)
T d1wrka1 8 QLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRML 45 (82)
T ss_dssp HCCHHHHHHHHHHHHHHTTTCTTSSBCHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHHcCcCCCCeEeHHHHHHHHHHc
Confidence 35555555555555443322222234444455555444
Done!