BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004378
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 148/350 (42%), Positives = 202/350 (57%), Gaps = 19/350 (5%)
Query: 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWG 79
A E + V VR+RPL+ +E + E D ++Y+ +GS ++ FDRVF G
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQ---VDGS---KSFNFDRVFHG 54
Query: 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFD 133
+ +T VYE+ A I S + G N +IFAYGQT+SGKTYTM G + + DIF
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ 114
Query: 134 YIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXXXXXXXXXILKDW 191
I + +R F+L+ S MEIYNE I DLL + PL + +D ++
Sbjct: 115 KIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTS 174
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR-EFLGKENSTTLSASVNFV 250
+ ++ E R GET +N++SSRSH I R+++ES + E E S +S +N V
Sbjct: 175 EMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVS-HLNLV 233
Query: 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQP 309
DLAGSERA+Q + G RLKEGC+INRSL L VI+KLS G+ G INYRDSKLTR+LQ
Sbjct: 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQN 293
Query: 310 CLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 359
LGGNA+T IICT++P ++T L FA AK + VN V +D+
Sbjct: 294 SLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 134/356 (37%), Positives = 194/356 (54%), Gaps = 16/356 (4%)
Query: 23 EKILVLVRLRPLSEKEITA--DEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGD 80
E + V+VR RP++ KE A D+ D + + + +N P +TFD V+ +
Sbjct: 21 ESVRVVVRCRPMNGKEKAASYDKVVDVD-VKLGQVSVKNPKGTAHEMPKTFTFDAVYDWN 79
Query: 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI-----TECTVADIFDYI 135
++Y++ + + SV+ G N +IFAYGQT +GKTYTM GI + + FD+I
Sbjct: 80 AKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHI 139
Query: 136 HRHEERA----FVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILKD 190
H R+ ++++ S +EIY E IRDLLS D T L L + P + K
Sbjct: 140 FTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKS 199
Query: 191 WNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFV 250
++ ++++ R +G T +NE SSRSH I + IE S G EN + +N V
Sbjct: 200 VKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDG-ENHIRV-GKLNLV 257
Query: 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC 310
DLAGSER ++ + G RLKE IN SL L VI L G++ HI YRDSKLTR+LQ
Sbjct: 258 DLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDS 317
Query: 311 LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQ 366
LGGNA+T ++ + PA +VE+T TL +A AK + K +VN D AL++ Q
Sbjct: 318 LGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 178/344 (51%), Gaps = 25/344 (7%)
Query: 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREG--STFPSAYTFDRVFWG 79
E+ I V+ R RPL++ E A + + + N + E S Y FD+VF
Sbjct: 10 EDSIKVVCRFRPLNDSEEKAG--------SKFVVKFPNNVEENCISIAGKVYLFDKVFKP 61
Query: 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------TGITECTVAD 130
+ S +VY + AK I V++G N +IFAYGQTSSGKT+TM GI V D
Sbjct: 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVND 121
Query: 131 IFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILK 189
IF++I+ E F +K S EIY + IRDLL L + +D +
Sbjct: 122 IFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVS 181
Query: 190 DWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249
+ E++ ++ R I T +NE SSRSH + + ++ +E L EN LS +
Sbjct: 182 SPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVK---QENL--ENQKKLSGKLYL 236
Query: 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQP 309
VDLAGSE+ S+ + G L E +IN+SL L VI L+ G HI YRDSKLTR+LQ
Sbjct: 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQE 296
Query: 310 CLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
LGGNART I+ SPA + +T++TL F AK V VN
Sbjct: 297 SLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN 340
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 128/346 (36%), Positives = 181/346 (52%), Gaps = 31/346 (8%)
Query: 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDC 81
E I V+ R RPL+E E+ + + + T++ + Y FDRVF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIAS---------KPYAFDRVFQSST 56
Query: 82 STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------TGITECTVADIF 132
S QVY D AK+I V+ G N +IFAYGQTSSGKT+TM GI V DIF
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 133 DYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDW 191
+YI+ +E F +K S EIY + IRDLL T L + +D +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP 176
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT---LSASVN 248
+ + + + ++ R + T +NE SSRSH I + ++ +EN+ T LS +
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENTQTEQKLSGKLY 228
Query: 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQ 308
VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++ YRDSK+TR+LQ
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRDSKMTRILQ 287
Query: 309 PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354
LGGN RT I+ SP+ + +T++TLLF AK + VNV
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 127/370 (34%), Positives = 184/370 (49%), Gaps = 45/370 (12%)
Query: 23 EKILVLVRLRPLSEKEITADEATDWECI-----NDTTILYRNTLREGSTFPSAYTFDRVF 77
E + V+ R RPLS KE EA E I + RN P +TFD V+
Sbjct: 21 EALKVVARCRPLSRKE----EAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVY 76
Query: 78 WGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG---------ITECTV 128
+Y++ + + SV+ G N ++FAYGQT +GKTYTM G +
Sbjct: 77 DASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAF 136
Query: 129 ADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD-NTPLRLLDDPXXXXXXXXXXXXI 187
IF +I R + + ++++ S +EIY E IRDLLS + L L ++P +
Sbjct: 137 EHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFV 196
Query: 188 LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASV 247
K+ ++ ++++ R +G T +NE SSRSH I + +E S R G+++ +
Sbjct: 197 TKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRV--GKL 254
Query: 248 NFVDLAGSERASQA---LSTGA---------------------RLKEGCHINRSLLTLST 283
N VDLAGSER ++A + GA R KE IN SL L
Sbjct: 255 NLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGN 314
Query: 284 VIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCA 343
VI L+ R+ HI YRDSKLTR+LQ LGGNA+T ++ TL PA +++ +TL FA A
Sbjct: 315 VIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRA 374
Query: 344 KEVTTKAQVN 353
K + K +VN
Sbjct: 375 KNIKNKPRVN 384
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 127/346 (36%), Positives = 180/346 (52%), Gaps = 31/346 (8%)
Query: 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDC 81
E I V+ R RPL+E E+ + + + T++ + Y FDRVF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIAS---------KPYAFDRVFQSST 56
Query: 82 STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------TGITECTVADIF 132
S QVY D AK+I V+ G N +IFAYGQTSSGK +TM GI V DIF
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 133 DYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDW 191
+YI+ +E F +K S EIY + IRDLL T L + +D +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP 176
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT---LSASVN 248
+ + + + ++ R + T +NE SSRSH I + ++ +EN+ T LS +
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENTQTEQKLSGKLY 228
Query: 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQ 308
VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++ YRDSK+TR+LQ
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRDSKMTRILQ 287
Query: 309 PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354
LGGN RT I+ SP+ + +T++TLLF AK + VNV
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 178/338 (52%), Gaps = 31/338 (9%)
Query: 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDC 81
E I V+ R RPL+E E+ + + + T++ + Y FDRVF
Sbjct: 6 ECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIAS---------KPYAFDRVFQSST 56
Query: 82 STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------TGITECTVADIF 132
S QVY D AK+I V+ G N +IFAYGQTSSGKT+TM GI V DIF
Sbjct: 57 SQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIF 116
Query: 133 DYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDW 191
+YI+ +E F +K S EIY + IRDLL T L + +D +
Sbjct: 117 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSP 176
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT---LSASVN 248
+ + + + ++ R + T +NE SSRSH I + ++ +EN+ T LS +
Sbjct: 177 DEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVK--------QENTQTEQKLSGKLY 228
Query: 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQ 308
VDLAGSE+ S+ + GA L E +IN+SL L VI L++G ++ YRDSK+TR+LQ
Sbjct: 229 LVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRDSKMTRILQ 287
Query: 309 PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346
LGGN RT I+ SP+ + +T++TLLF AK +
Sbjct: 288 DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 184/354 (51%), Gaps = 25/354 (7%)
Query: 24 KILVLVRLRPLSEKEITADEATDWECINDTTI--LYRNTLREGSTFPSAYTFDRVFWGDC 81
KI V RLRPL EKEI A E +++ T+ L+++ + +DRVF G+
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDK------AKQHMYDRVFDGNA 59
Query: 82 STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------TGITECTVADIFDYI 135
+ V+ED K + S V G N IFAYGQT SGKT+T+ G+T ++++F +
Sbjct: 60 TQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIM 118
Query: 136 HRHEER-AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD---DPXXXXXXXXXXXXILKDW 191
+ + +F LK +E+Y + + DLL LD D + +
Sbjct: 119 KKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTY 178
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251
LK ++ QR TL+NE+SSRSH I+ ++IES+ + ++FVD
Sbjct: 179 EELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIEST-----NLQTQAIARGKLSFVD 233
Query: 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCL 311
LAGSER ++ S G +LKE IN+SL L VI LS G N HI YR+ KLT ++ L
Sbjct: 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPYRNHKLTMLMSDSL 292
Query: 312 GGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHL 365
GGNA+T + +SPA S++++T N+L +A + + NV + A +K L
Sbjct: 293 GGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKL 346
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 125/347 (36%), Positives = 183/347 (52%), Gaps = 24/347 (6%)
Query: 23 EKILVLVRLRPLSEKE--------ITADEATDWECINDTTILYRNTLREGSTFPSAYTFD 74
+ I V+VR RPL+ +E I DEA+ ++ + + P +TFD
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPE--QEKSATQAKKVPRTFTFD 61
Query: 75 RVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE------CTV 128
V+ +++ K + +V+ G NS+IFAYGQT +GKT+TM G E +
Sbjct: 62 AVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSF 121
Query: 129 ADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXI 187
+FD I+ + F++ S +E+YNE IRDL+ +NT L L +D
Sbjct: 122 KHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVDGLSMHR 180
Query: 188 LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS- 246
+ L L+ A R + T +N+ SSRSH I + IE S E + EN +
Sbjct: 181 VTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECS--EVI--ENKEVIRVGK 236
Query: 247 VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRM 306
+N VDLAGSER S+ +TG L EG IN SL L VI KL +G HI YRDSKLTR+
Sbjct: 237 LNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGAT-HIPYRDSKLTRL 295
Query: 307 LQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
LQ LGGN++T + +SPA ++ ++T +TL +A AK++ K ++N
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/353 (35%), Positives = 187/353 (52%), Gaps = 29/353 (8%)
Query: 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCS 82
+ I V VR+RPL+ +E A + + ++ R+TL S +TFDR F +
Sbjct: 23 QNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTL--DSKLTKKFTFDRSFGPESK 80
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG-----------------ITE 125
VY + V++G N ++FAYGQT +GKT+TM G I
Sbjct: 81 QCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIP 140
Query: 126 CTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNT-PLRLLDDPXXXXXXXXX- 183
++ +FD + R E + ++ S +E+YNE + DLLSTD+T +R+ DD
Sbjct: 141 RALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQG 199
Query: 184 -XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242
+ + + +LL + +R+ TL+N +SSRSH + +++ RE G E
Sbjct: 200 LEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVH--IREN-GIEGEDM 256
Query: 243 LS-ASVNFVDLAGSERASQALS-TGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 300
L +N VDLAGSE S+A + G R++E +IN+SLLTL VI L R H+ YR+
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVPYRE 315
Query: 301 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
SKLTR+LQ LGG +T+II T+SP +E+T +TL +A AK + K +VN
Sbjct: 316 SKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 176 bits (446), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 197/390 (50%), Gaps = 48/390 (12%)
Query: 1 MGAVGAEELMKMEKMQAPSAREEKILVLVRLRPLSEKEITADEATDWECI-----NDTTI 55
M ++ + M + + P A + V VR+RP + +E++ D +CI + TTI
Sbjct: 1 MASMTGGQQMGRDPINMPGA---SVKVAVRVRPFNSREMSRDS----KCIIQMSGSTTTI 53
Query: 56 LYRNTLREGSTFPSAYTFDRVFWGD--------CSTTQVYEDGAKEIALSVVSGINSSIF 107
+ +E P +++FD +W S QVY D +E+ G N IF
Sbjct: 54 VNPKQPKET---PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIF 110
Query: 108 AYGQTSSGKTYTMTG--------ITECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAI 157
AYGQT +GK+YTM G I D+F I+ ++ ++ ++ S MEIY E +
Sbjct: 111 AYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERV 170
Query: 158 RDLLSTDNTP-LRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKS 216
RDLL+ N LR+ + P + +N +++L+ R + T +NE S
Sbjct: 171 RDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETS 230
Query: 217 SRSHQIIRLMIESSAREFLGKENSTTLSAS-VNFVDLAGSERASQALSTGARLKEGCHIN 275
SRSH + ++ + + + N TT S ++ VDLAGSERA + G RLKEG +IN
Sbjct: 231 SRSHAVFNIIF--TQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANIN 288
Query: 276 RSLLTLSTVIRKLSKGRNG-----------HINYRDSKLTRMLQPCLGGNARTAIICTLS 324
+SL TL VI L++ +G I YRDS LT +L+ LGGN+RTA++ LS
Sbjct: 289 KSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALS 348
Query: 325 PARSHVEQTRNTLLFACCAKEVTTKAQVNV 354
PA + ++T +TL +A AK++ VN+
Sbjct: 349 PADINYDETLSTLRYADRAKQIRNTVSVNL 378
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 186/365 (50%), Gaps = 45/365 (12%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECI-----NDTTILYRNTLREGSTFPSAYTFDRVFWG 79
+ V VR+RP + +E++ D +CI + TTI+ +E P +++FD +W
Sbjct: 6 VKVAVRVRPFNSREMSRDS----KCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 80 D--------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------I 123
S QVY D +E+ G N IFAYGQT +GK+YTM G I
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 124 TECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXX 180
D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
+ +N +++L+ R + T +NE SSRSH + ++ + + N
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHD--AETNI 236
Query: 241 TTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG----- 294
TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 295 ------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 348
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRN 356
Query: 349 KAQVN 353
VN
Sbjct: 357 TVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 187/365 (51%), Gaps = 45/365 (12%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECI-----NDTTILYRNTLREGSTFPSAYTFDRVFWG 79
+ V VR+RP + +E++ D +CI + TTI+ +E P +++FD +W
Sbjct: 6 VKVAVRVRPFNSREMSRDS----KCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 80 D--------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------I 123
S QVY D +E+ G N IFAYGQT +GK+YTM G I
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 124 TECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXX 180
D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
+ +N +++L+ R + T +NE SSRSH + ++ + + + N
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIF--TQKRHDAETNI 236
Query: 241 TTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG----- 294
TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 295 ------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 348
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRN 356
Query: 349 KAQVN 353
VN
Sbjct: 357 TVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 123/365 (33%), Positives = 187/365 (51%), Gaps = 45/365 (12%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECI-----NDTTILYRNTLREGSTFPSAYTFDRVFWG 79
+ V VR+RP + +E++ D +CI + TTI+ +E P +++FD +W
Sbjct: 6 VKVAVRVRPFNSREMSRDS----KCIIQMSGSTTTIVNPKQPKET---PKSFSFDYSYWS 58
Query: 80 D--------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG--------I 123
S QVY D +E+ G N IFAYGQT +GK+YTM G I
Sbjct: 59 HTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGI 118
Query: 124 TECTVADIFDYIH--RHEERAFVLKFSAMEIYNEAIRDLLSTDNTP-LRLLDDPXXXXXX 180
D+F I+ ++ ++ ++ S MEIY E +RDLL+ N LR+ + P
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
+ +N +++L+ R + T +NE SSRSH + ++ + + + N
Sbjct: 179 EDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIF--TQKRHDAETNI 236
Query: 241 TTLSAS-VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNG----- 294
TT S ++ VDLAGSERA + G RLKEG +IN+SL TL VI L++ +G
Sbjct: 237 TTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNK 296
Query: 295 ------HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTT 348
I YRDS LT +L+ LGGN+RTA++ LSPA + ++T +TL +A AK++
Sbjct: 297 KKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRN 356
Query: 349 KAQVN 353
VN
Sbjct: 357 TVSVN 361
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 187/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR+RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 12 KEEKGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKT-YTFDM 70
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N++IFAYGQT +GKT+TM
Sbjct: 71 VFGASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEED 130
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 250 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 306
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/363 (33%), Positives = 193/363 (53%), Gaps = 37/363 (10%)
Query: 24 KILVLVRLRPLSEKEITADEATDWECINDTTI--LYRNTLREGSTFPSAYTFDRVFWGDC 81
KI V R+RPL+EKE + E +++ T+ +++ R+ + +DRVF
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRK------QHIYDRVFDMRA 67
Query: 82 STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------TGITECTVADIFDYI 135
S ++ED K + S V G N IFAYGQT SGKT+T+ G+T ++F+ +
Sbjct: 68 SQDDIFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNIL 126
Query: 136 HRHEER-AFVLKFSAMEIYNEAIRDLL---STDNTPLRLLDDPXXXXXXXXXXXXILKDW 191
R +R +F LK +E+Y + + DLL S L + D +
Sbjct: 127 KRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTL 186
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251
L+ +L +R + T +NE+SSRSH I+ ++IES + + + ++FVD
Sbjct: 187 EELRMILERGSERRHVSGTNMNEESSRSHLILSVVIES-----IDLQTQSAARGKLSFVD 241
Query: 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCL 311
LAGSER ++ S G +LKE IN+SL L VI LS G N HI YR+ KLT ++ L
Sbjct: 242 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIPYRNHKLTMLMSDSL 300
Query: 312 GGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHL-QKELA 370
GGNA+T + +SPA S++++T N+LL+A ++V +++D + KH+ KE+
Sbjct: 301 GGNAKTLMFVNVSPAESNLDETYNSLLYA---------SRVRTIVNDPS--KHISSKEMV 349
Query: 371 RLE 373
RL+
Sbjct: 350 RLK 352
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 169/349 (48%), Gaps = 26/349 (7%)
Query: 15 MQAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFD 74
M P A E + V +R+RPL KE+ + C+ L R TL F F
Sbjct: 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQS---CLQVEPGLGRVTLGRDRHF----GFH 55
Query: 75 RVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------TG 122
V D VY+ + + + G N+++FAYGQT SGKTYTM G
Sbjct: 56 VVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQG 115
Query: 123 ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXXX 180
I +A+ F I ++ ++ S +E+Y E RDLL T + ++L +D
Sbjct: 116 IVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVL 175
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR---EFLGK 237
++ + + LL + A R G T LN SSRSH + + +E R
Sbjct: 176 CGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRP 235
Query: 238 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS--KGRNGH 295
L + +FVDLAGSER + STG RLKE IN SLL L VI L + R H
Sbjct: 236 APGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSH 295
Query: 296 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 344
I YRDSK+TR+L+ LGGNA+T +I +SP+ S ++T NTL +A A+
Sbjct: 296 IPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 168 bits (426), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 116/360 (32%), Positives = 174/360 (48%), Gaps = 21/360 (5%)
Query: 19 SAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFW 78
S+ I V+ R RP + EI + T + +GS +TFDRVF
Sbjct: 2 SSSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGS-----FTFDRVFD 56
Query: 79 GDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG----------ITECTV 128
C + +++ K +++G N ++FAYGQT +GK+YTM G + V
Sbjct: 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIV 116
Query: 129 ADIFDYIHRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXI 187
IF I + ++ S MEIY E IRDLL+ N L + ++
Sbjct: 117 EQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIY 176
Query: 188 LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASV 247
+ + E++ R + T +N++SSRSH I + I E + S +
Sbjct: 177 VSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQK-----NVETGSAKSGQL 231
Query: 248 NFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRML 307
VDLAGSE+ + ++G L+E IN+SL L VI L+ G++ H+ YRDSKLTR+L
Sbjct: 232 FLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRIL 291
Query: 308 QPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQK 367
Q LGGN+RT +I SP+ + +T +TL F AK + KA+VN +S L + L K
Sbjct: 292 QESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAK 351
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 14 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 72
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 73 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 132
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 133 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 191
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 192 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 251
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 252 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 308
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 309 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 11 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 69
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 70 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 129
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 130 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 188
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 189 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 248
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 249 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 305
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 306 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 166 bits (421), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 70
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 71 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 130
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 250 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 306
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 70
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 71 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 130
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 250 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 306
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 70
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 71 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEV 130
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 131 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 250 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 306
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 166 bits (420), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 3 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 61
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 62 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 121
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 122 PLAGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 180
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 181 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 240
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 241 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 297
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 298 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 32/360 (8%)
Query: 21 REEK---ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDR 75
+EEK I V+VR RP L+E++ +A + + + + L + S+ + YTFD
Sbjct: 12 KEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDM 70
Query: 76 VFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM--------------- 120
VF VY I V+ G N +IFAYGQT +GKT+TM
Sbjct: 71 VFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEED 130
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPX 175
GI T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 131 PLDGIIPRTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 176 XXXXXXXX--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSARE 233
+ + + + ++L A+R TL+N SSRSH + + I
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 234 FLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN 293
G+E +N VDLAGSE ++ + R +E +IN+SLLTL VI L + R
Sbjct: 250 IDGEE--LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RT 306
Query: 294 GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353
H+ YR+SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K +VN
Sbjct: 307 PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 182/350 (52%), Gaps = 32/350 (9%)
Query: 24 KILVLVRLRPLSEKEITADEATDWECINDTTIL--YRNTLREGSTF--PSAYTFDRVFWG 79
K+ V VR+RP++ +E + + IL L +G P + +D FW
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 80 -DCSTTQ-------VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE------ 125
D S + V++ + I + G N+ IFAYGQT SGK+YTM G +
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIP 121
Query: 126 --CTVADIFDYIHR--HEERAFVLKFSAMEIYNEAIRDLLSTDNT--PLRLLDDPXXXXX 179
C+ +F+ + +EE++F ++ S MEIYNE +RDLL + L++ +
Sbjct: 122 RLCS--GLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPY 179
Query: 180 XXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239
+ + ++ L+S R + T +NE+SSRSH + ++ + + + +
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239
Query: 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS-----KGRNG 294
+ ++ VDLAGSERA++ + G RLKEG +IN+SL TL VI L+ K +N
Sbjct: 240 GEKV-GKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNK 298
Query: 295 HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 344
+ YRDS LT +L+ LGGN++TA++ T+SPA + ++T +TL +A AK
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/349 (34%), Positives = 178/349 (51%), Gaps = 29/349 (8%)
Query: 25 ILVLVRLRP--LSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCS 82
I V+VR RP L+E++ +A + + + + L + S+ + YTFD VF
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKT-YTFDMVFGASTK 62
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM-----------------TGITE 125
VY I V+ G N +IFAYGQT +GKT+TM GI
Sbjct: 63 QIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIP 122
Query: 126 CTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTP-LRLLDDPXXXXXXXX 182
T+ IF+ + + F +K S +EIYNE + DLL S+D + L++ DDP
Sbjct: 123 RTLHQIFEKLTDNGTE-FSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 181
Query: 183 X--XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
+ + + + ++L A+R TL+N SSRSH + + I G+E
Sbjct: 182 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEE-- 239
Query: 241 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 300
+N VDLAGSE ++ + R +E +IN+SLLTL VI L + R H+ YR+
Sbjct: 240 LVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVPYRE 298
Query: 301 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTK 349
SKLTR+LQ LGG RT+II T+SPA ++E+T +TL +A AK + K
Sbjct: 299 SKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 167/349 (47%), Gaps = 26/349 (7%)
Query: 15 MQAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFD 74
M P A E + V +R+RPL KE+ + C+ L R TL F F
Sbjct: 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQS---CLQVEPGLGRVTLGRDRHF----GFH 55
Query: 75 RVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------TG 122
V D VY+ + + + G N+++FAYGQT SGKTYTM G
Sbjct: 56 VVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQG 115
Query: 123 ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL--STDNTPLRLLDDPXXXXXX 180
I +A+ F I ++ ++ S +E+Y E RDLL T + ++L +D
Sbjct: 116 IVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVL 175
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAR---EFLGK 237
++ + + LL + A R G T LN SSRSH + + ++ R
Sbjct: 176 CGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRP 235
Query: 238 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS--KGRNGH 295
L + +FVDLAGSER + STG KE IN SLL L VI L + R +
Sbjct: 236 APGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSN 295
Query: 296 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 344
I YRDSK+TR+L+ LGGNA+T +I +SP+ S ++T NTL +A A+
Sbjct: 296 IPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 108/329 (32%), Positives = 168/329 (51%), Gaps = 46/329 (13%)
Query: 70 AYTFDRVFWGD-------CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM-- 120
++TFD+ FW + VY+ +E G ++ IFAYGQT SGK+YTM
Sbjct: 97 SFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMG 156
Query: 121 ----TGITECTVADIFDYIHRHEER----AFVLKFSAMEIYNEAIRDLLS--TDNTP--- 167
G+ T D+F I ++ ++ +K S E+YNE +RDLL+ N P
Sbjct: 157 TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYY 216
Query: 168 LRLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMI 227
L++ + P ++ + + I + R + T +N+ SSRSH + +M+
Sbjct: 217 LKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIML 276
Query: 228 ESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRK 287
+ + L +++T S+ + VDLAGSERA +TG RL+EG +IN+SL TL VI
Sbjct: 277 KQIHHD-LETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAA 335
Query: 288 LS----------------KGR-----NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPA 326
L+ +GR N + YRDS LT +L+ LGGN++TA+I +SP
Sbjct: 336 LADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP- 394
Query: 327 RSHVEQTRNTLLFACCAKEVTTKAQVNVV 355
+ ++T +TL +A AK + T+A VN V
Sbjct: 395 -TDYDETLSTLRYADQAKRIRTRAVVNQV 422
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 112/345 (32%), Positives = 166/345 (48%), Gaps = 28/345 (8%)
Query: 27 VLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSA---------------- 70
V+VR+RP + KE A ++ +++ E S F
Sbjct: 14 VVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLK 73
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVAD 130
+ FD VF + ++V+E K I S ++G N ++ AYG T +GKT+TM G +
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVM 133
Query: 131 IFDYIHRH-------EERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXX 183
+H + EE+ S +E+YNE IRDLL ++ PL + +D
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVVHGL 192
Query: 184 XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243
K + LL R T +N SSRSH + ++ + + N
Sbjct: 193 TLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKT--ASINQNVR 250
Query: 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKL--SKGRNGHINYRDS 301
A ++ +DLAGSERAS + + G R EG +INRSLL L VI L SK +N HI YR+S
Sbjct: 251 IAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310
Query: 302 KLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346
KLTR+L+ LGGN +T +I +SP+ + T NTL +A AK++
Sbjct: 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/331 (32%), Positives = 174/331 (52%), Gaps = 29/331 (8%)
Query: 25 ILVLVRLRPLSEKEITADEATD---WECINDTTILYRNTLREGSTFPSAYTFDRVFWGDC 81
I V+ R+RP+++++ EAT+ ++ +D+ I + L +G P ++ D+VF
Sbjct: 6 IRVIARVRPVTKEDGEGPEATNAVTFDADDDSII---HLLHKGK--PVSFELDKVFSPQA 60
Query: 82 STTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------TGITECTVADIFDYI 135
S V+++ + + S + G N IFAYGQT +GKTYTM GI + + +F +
Sbjct: 61 SQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEV 119
Query: 136 H-RHEERAFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPXXXXXXXXXXXXILKDW 191
+ + + + SA EIYNE +RDLL + +RL D ++
Sbjct: 120 QEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSV 179
Query: 192 NHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL--SASVNF 249
+ + ++ R T LNE SSRSH ++ + + G + ST L + +N
Sbjct: 180 DDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVR-------GVDCSTGLRTTGKLNL 232
Query: 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQP 309
VDLAGSER ++ + G+RL+E HIN+SL L VI L + R GH+ +R+SKLT +LQ
Sbjct: 233 VDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPFRNSKLTYLLQD 291
Query: 310 CLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
L G+++T ++ +SP + +T +L FA
Sbjct: 292 SLSGDSKTLMVVQVSPVEKNTSETLYSLKFA 322
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 175/346 (50%), Gaps = 29/346 (8%)
Query: 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGST--FPSAYTFDRVFWGD 80
+ I V R+RP E E T W +++T+ ++ + + ++FD+VF
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCT-WTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPL 117
Query: 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------TVADIFDY 134
S + ++E + I S + G N IFAYGQT SGKTYTM G+ E TV +FD
Sbjct: 118 SSQSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDS 176
Query: 135 I--HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXXXXXXXXXILKD 190
I +R+ + +K + +EIYNE + DLLS + + +R+ + + D
Sbjct: 177 IRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLD 236
Query: 191 WNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK--ENSTTLSASVN 248
NHL+ L+ + R T NE+SSRSH + +L E +G+ E S+N
Sbjct: 237 PNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSIN 289
Query: 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQ 308
VDLAGSE T R+ E +INRSL L+ VI L + + HI YR+SKLT +L
Sbjct: 290 LVDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLM 344
Query: 309 PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 353
P LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 345 PSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 174/344 (50%), Gaps = 29/344 (8%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGST--FPSAYTFDRVFWGDCS 82
I V R+RP E E T W +++T+ ++ + + ++FD+VF S
Sbjct: 55 IRVFCRIRPPLESEENRMCCT-WTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 113
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------TVADIFDYI- 135
+ ++E + I S + G N IFAYGQT SGKTYTM G+ E TV +FD I
Sbjct: 114 QSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 172
Query: 136 -HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXXXXXXXXXILKDWN 192
+R+ + +K + +EIYNE + DLLS + + +R+ + + D N
Sbjct: 173 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 232
Query: 193 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK--ENSTTLSASVNFV 250
HL+ L+ + R T NE+SSRSH + +L E +G+ E S+N V
Sbjct: 233 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 285
Query: 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC 310
DLAGSE T R+ E +INRSL L+ VI L + + HI YR+SKLT +L P
Sbjct: 286 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 340
Query: 311 LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 353
LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 341 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 384
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 149 bits (375), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 174/344 (50%), Gaps = 29/344 (8%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGST--FPSAYTFDRVFWGDCS 82
I V R+RP E E T W +++T+ ++ + + ++FD+VF S
Sbjct: 69 IRVFCRIRPPLESEENRMCCT-WTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 127
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------TVADIFDYI- 135
+ ++E + I S + G N IFAYGQT SGKTYTM G+ E TV +FD I
Sbjct: 128 QSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 186
Query: 136 -HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXXXXXXXXXILKDWN 192
+R+ + +K + +EIYNE + DLLS + + +R+ + + D N
Sbjct: 187 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 246
Query: 193 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK--ENSTTLSASVNFV 250
HL+ L+ + R T NE+SSRSH + +L E +G+ E S+N V
Sbjct: 247 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 299
Query: 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC 310
DLAGSE T R+ E +INRSL L+ VI L + + HI YR+SKLT +L P
Sbjct: 300 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 354
Query: 311 LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 353
LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 355 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 398
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 111/330 (33%), Positives = 169/330 (51%), Gaps = 28/330 (8%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGST--FPSAYTFDRVFWGDCS 82
I V R+RP E E T W +++T+ ++ + + ++FD+VF S
Sbjct: 58 IRVFCRIRPPLESEENRMCCT-WTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 116
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------TVADIFDYI- 135
+ ++E + I S + G N IFAYGQ+ SGKTYTM G+ E TV +FD I
Sbjct: 117 QSDIFEMVSPLIQ-SALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 136 -HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXXXXXXXXXILKDWN 192
+R+ + +K + +EIYNE + DLLS + + +R+ + + D N
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 235
Query: 193 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK--ENSTTLSASVNFV 250
HL+ L+ + R T NE+SSRSH + +L E +G+ E S+N V
Sbjct: 236 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 288
Query: 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC 310
DLAGSE T R+ E +INRSL L+ VI L + + HI YR+SKLT +L P
Sbjct: 289 DLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 343
Query: 311 LGGNARTAIICTLSPARSHVEQTRNTLLFA 340
LGGN++T + +SP + +++ +L FA
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 115/344 (33%), Positives = 173/344 (50%), Gaps = 29/344 (8%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGST--FPSAYTFDRVFWGDCS 82
I V R+RP E E T W +++T+ ++ + + ++FD+VF S
Sbjct: 58 IRVFCRIRPPLESEENRMCCT-WTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSS 116
Query: 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC------TVADIFDYI- 135
+ ++E + I S + G N IFAYGQT SGKTYTM G+ E TV +FD I
Sbjct: 117 QSDIFEMVSPLIQ-SALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIR 175
Query: 136 -HRHEERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDDPXXXXXXXXXXXXILKDWN 192
+R+ + +K + +EIYNE + DLLS + + +R+ + + D N
Sbjct: 176 GYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPN 235
Query: 193 HLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK--ENSTTLSASVNFV 250
HL+ L+ + R T NE+SSRSH + +L E +G+ E S+N V
Sbjct: 236 HLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIGRHAEKQEISVGSINLV 288
Query: 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC 310
DLAGSE T R+ E +I RSL L+ VI L + + HI YR+SKLT +L P
Sbjct: 289 DLAGSESPK----TSTRMTETKNIKRSLSELTNVILALLQ-KQDHIPYRNSKLTHLLMPS 343
Query: 311 LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV-TTKAQVN 353
LGGN++T + +SP + +++ +L FA TKA+ N
Sbjct: 344 LGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 387
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 116/368 (31%), Positives = 169/368 (45%), Gaps = 24/368 (6%)
Query: 15 MQAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFD 74
Q P AR + V VRLRP + A + ++ ++ N T Y FD
Sbjct: 16 FQGPPAR---VRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETL--KYQFD 70
Query: 75 RVFWGDCSTTQ-VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE---CTVAD 130
F+G+ ST Q +Y + I ++ G N+S+ AYG T +GKT+TM G E
Sbjct: 71 -AFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRA 129
Query: 131 IFDYIHRHEER-------AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXX 183
+ D + E A + S +EIY E + DLL + L + +D
Sbjct: 130 LMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGL 189
Query: 184 XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243
+ + + R +G T LN++SSRSH + L+++ RE L
Sbjct: 190 SQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAV--LLVKVDQRERLAPFRQR-- 245
Query: 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKL 303
+ +DLAGSE + + G RLKE IN SL L V+ L++G + YRDSKL
Sbjct: 246 EGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLP-RVPYRDSKL 304
Query: 304 TRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKAL-- 361
TR+LQ LGG+A + +I ++P R T + L FA +KEV + N + AL
Sbjct: 305 TRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGP 364
Query: 362 VKHLQKEL 369
VK QKEL
Sbjct: 365 VKLSQKEL 372
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 150/281 (53%), Gaps = 16/281 (5%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + S V+E+ ++ I S+ G N +FAYGQT SGKT+TM+ G+
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSL-DGTNVCVFAYGQTGSGKTFTMSHPTNGMIPL 490
Query: 127 TVADIFDYIHRHEER--AFVLKFSAMEIYNEAIRDLLSTD---NTPLRLLDDPXXXXXXX 181
++ IF+ I +E+ ++ ++ +EIYNEAI DLL+ NT + D
Sbjct: 491 SLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAGKTTV 550
Query: 182 XXXXXI-LKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
I +K +L+ +R T N+ SSRSH I +I+ L KE+S
Sbjct: 551 TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSI--FIIDLQGYNSLTKESS 608
Query: 241 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRD 300
++N +DLAGSER + + + G RLKE IN+SL L VI L+ H+ YR+
Sbjct: 609 Y---GTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRN 665
Query: 301 SKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFAC 341
SKLT +L+ LGGN++T + +SP + +T N+L FA
Sbjct: 666 SKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 110/336 (32%), Positives = 162/336 (48%), Gaps = 26/336 (7%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTT 84
I V R+RP E E + +D T+ G++ + FD++F +
Sbjct: 30 IRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINRGNSQVIPFKFDKIFDQQETND 89
Query: 85 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHEE 140
+++++ + I S + G N IFAYGQT SGKTYTM GI T+ IF +I +
Sbjct: 90 EIFKEVGQLIQ-SSLDGYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSWIDKLAA 148
Query: 141 RAFVLKFSA--MEIYNEAIRDLL------------STDNTPLRLLDDPXXXXXXXXXXXX 186
R + K S +EIYNE I DLL + D+ D
Sbjct: 149 RGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITTC 208
Query: 187 ILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS 246
+L + + ++L R T NE SSRSH I + +E E G+++ L
Sbjct: 209 VLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGK-NEGTGEKSQGIL--- 264
Query: 247 VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GRNGHINYRDSKLT 304
N VDLAGSER + ++ G RL+E IN+SL L VI L+ G+ HI +R+SKLT
Sbjct: 265 -NLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLT 323
Query: 305 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
+LQ L G+++T + +SPA H+ +T N+L FA
Sbjct: 324 YLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFA 359
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 151/289 (52%), Gaps = 24/289 (8%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + V+++ ++ S + G N +IFAYGQT SGKT+TM GI
Sbjct: 110 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPS 168
Query: 127 TVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL-----LDDP 174
T++ IF++I++ + + + K +A +EIYNE I DLL +DN T + L D
Sbjct: 169 TISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 228
Query: 175 XXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234
L+ ++ +L R T NE SSRSH I + + S +
Sbjct: 229 TKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK- 287
Query: 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GR 292
G + TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 288 TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDST 343
Query: 293 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFAC 341
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 344 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFAS 392
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/282 (34%), Positives = 140/282 (49%), Gaps = 19/282 (6%)
Query: 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC---------TVAD 130
D S VYE AK++ + G N +I YGQT +GKTYTM G TE +
Sbjct: 82 DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQ 141
Query: 131 IFDYIHRHEERAFVLKFSAMEIYNEAIRDLLST------DNTPLRLLDDPXXXXXXXXXX 184
+F I A ++ S +EIYNE++ DLLST TP+ ++++P
Sbjct: 142 VFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQGVFIKGLSV 201
Query: 185 XXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLS 244
++ + LL E R I +N+ SSRSH I + +E+ +R L +E T
Sbjct: 202 HLTSQEEDAF-SLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT-LSEEKYIT-- 257
Query: 245 ASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLT 304
+ +N VDLAGSER ++ S G LKE +IN+SL L I L + HI +R KLT
Sbjct: 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLT 317
Query: 305 RMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346
L+ LGGN ++ + + +E+T ++L FA K V
Sbjct: 318 HALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 149/288 (51%), Gaps = 24/288 (8%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI
Sbjct: 53 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 111
Query: 127 TVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL-----LDDP 174
T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 112 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 171
Query: 175 XXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234
L+ ++ +L R T NE SSRSH I + + S +
Sbjct: 172 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK- 230
Query: 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GR 292
G + TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 231 TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 286
Query: 293 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 287 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 334
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 149/288 (51%), Gaps = 24/288 (8%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI
Sbjct: 65 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 123
Query: 127 TVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL-----LDDP 174
T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 124 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 183
Query: 175 XXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234
L+ ++ +L R T NE SSRSH I + + S +
Sbjct: 184 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK- 242
Query: 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GR 292
G + TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 243 TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 298
Query: 293 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 299 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 346
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 148/288 (51%), Gaps = 24/288 (8%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 127 TVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL-----LDDP 174
T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 175 XXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234
L+ ++ +L R T NE SSRSH I + + S +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK- 231
Query: 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GR 292
G + TL N VDLAGS R + + G RL+E +IN+SL L VI L +
Sbjct: 232 TGAHSYGTL----NLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 287
Query: 293 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 148/288 (51%), Gaps = 24/288 (8%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 127 TVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL-----LDDP 174
T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 175 XXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234
L+ ++ +L R T NE SSRSH I + + S +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAK- 231
Query: 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GR 292
G + TL N VDLAGSER + + G RL+E +I +SL L VI L +
Sbjct: 232 TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDST 287
Query: 293 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/298 (32%), Positives = 146/298 (48%), Gaps = 26/298 (8%)
Query: 63 EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT- 121
EG + FD +F + +++E+ +++ S + G N IFAYGQT SGKTYTM
Sbjct: 47 EGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLN 105
Query: 122 ---GITECTVADIFDYIHRHEERA--FVLKFSAMEIYNEAIRDLL----STDNTPLRLLD 172
G+ T++ IF + +ER + ++ +EIYNE I DLL S DN L
Sbjct: 106 AGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDS 165
Query: 173 DPXXXXXXXXXXXXILKDWNHLK--------ELLSICEAQRRIGETLLNEKSSRSHQIIR 224
+ + +K +L R T NE+SSRSH +
Sbjct: 166 QKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSV-- 223
Query: 225 LMIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTV 284
M+ + R E S +N VDLAGSER + + TG RL+E +IN+SL L V
Sbjct: 224 FMVHINGRNLHTGETS---QGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDV 280
Query: 285 IRKLSKGRNG--HINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
I L+ G +I +R+SKLT +LQ L G+++T + + P +H+ +T N+L FA
Sbjct: 281 IYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFA 338
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 148/288 (51%), Gaps = 24/288 (8%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITEC 126
+ FD++F + V+++ ++ S + G N IFAYGQT SGKT+TM GI
Sbjct: 54 FKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPS 112
Query: 127 TVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-----TPLRL-----LDDP 174
T++ IF++I++ + + + K + +EIYNE I DLL +DN T + L D
Sbjct: 113 TISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQE 172
Query: 175 XXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234
L+ ++ +L R T NE SS SH I + + S +
Sbjct: 173 TKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK- 231
Query: 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK--GR 292
G + TL N VDLAGSER + + G RL+E +IN+SL L VI L +
Sbjct: 232 TGAHSYGTL----NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDST 287
Query: 293 NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
HI +R+SKLT +LQ L G+++T + +SP+ SH+ +T N+L FA
Sbjct: 288 KRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFA 335
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/298 (33%), Positives = 141/298 (47%), Gaps = 40/298 (13%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIAL---SVVSGINSSIFAYGQTSSGKTYTMTG----- 122
++FDRVF +V+E EIA+ S + G IFAYGQT SGKT+TM G
Sbjct: 85 FSFDRVFPPGSGQDEVFE----EIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGD 140
Query: 123 -----ITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDN-------TPL 168
+ + +F + + F A +EIYNE +RDLL+T +
Sbjct: 141 PQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEI 200
Query: 169 RLLDDPXXXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIE 228
R + + LL + R + T NE+SSRSH + +L I
Sbjct: 201 RRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQIS 260
Query: 229 SSAREFLGKENSTTL--SASVNFVDLAGSERASQALSTGA----RLKEGCHINRSLLTLS 282
G+ +S L A ++ VDLAGSER L+ G RL+E IN SL TL
Sbjct: 261 -------GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLG 313
Query: 283 TVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
VI LS + H+ YR+SKLT +LQ LGG+A+ + +SP +V ++ N+L FA
Sbjct: 314 LVIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFA 370
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/347 (30%), Positives = 164/347 (47%), Gaps = 34/347 (9%)
Query: 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFP-----SAYTFDRV 76
E +I V VR RPL+++E+ E D I +L + + A+ FD
Sbjct: 50 EHRICVCVRKRPLNKQELAKKE-IDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 108
Query: 77 FWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIH 136
F S VY A+ + ++ G ++ FAYGQT SGKT+TM G + I+
Sbjct: 109 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIY 168
Query: 137 RHEER-AFVLK-------------FSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXX 182
R F+LK + EIYN + DLL+ LR+L+D
Sbjct: 169 AMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQQVQVVG 227
Query: 183 XXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242
++ + + +++ + A R G+T N SSRSH ++++ + R
Sbjct: 228 LQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGR---------- 277
Query: 243 LSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGHINYRDS 301
+ + VDLAG+ER + S + + EG IN+SLL L IR L + + H +R+S
Sbjct: 278 MHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRES 336
Query: 302 KLTRMLQ-PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 347
KLT++L+ +G N+RT +I T+SP S E T NTL +A KE++
Sbjct: 337 KLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELS 383
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 169/349 (48%), Gaps = 38/349 (10%)
Query: 22 EEKILVLVRLRPLSEKEITADE----ATDWECINDTTILYRNTLREGSTF---PSAYTFD 74
E +I V VR RPL+++E+ E + +C+ +++ L+ T A+ FD
Sbjct: 70 EHRICVCVRKRPLNKQELAKKEIDVISVPSKCL---LLVHEPKLKVDLTKYLENQAFCFD 126
Query: 75 RVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------TG 122
F S VY A+ + ++ G ++ FAYGQT SGKT+TM G
Sbjct: 127 FAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKG 186
Query: 123 ITECTVADIFDYIHRHEERAFVLK--FSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXX 180
I D+F ++ R L+ + EIYN + DLL+ LR+L+D
Sbjct: 187 IYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQV 245
Query: 181 XXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240
++ + + +++++ A R G+T N SSRSH ++++ + R
Sbjct: 246 VGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR-------- 297
Query: 241 TTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGHINYR 299
L + VDLAG+ER + S + + EG IN+SLL L IR L + + H +R
Sbjct: 298 --LHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFR 354
Query: 300 DSKLTRMLQ-PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 347
+SKLT++L+ +G N+RT +I +SP S E T NTL +A KE++
Sbjct: 355 ESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 167/346 (48%), Gaps = 38/346 (10%)
Query: 25 ILVLVRLRPLSEKEITADE----ATDWECINDTTILYRNTLREGSTF---PSAYTFDRVF 77
I V VR RPL+++E+ E + +C+ +++ L+ T A+ FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCL---LLVHEPKLKVDLTKYLENQAFCFDFAF 57
Query: 78 WGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM------------TGITE 125
S VY A+ + ++ G ++ FAYGQT SGKT+TM GI
Sbjct: 58 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYA 117
Query: 126 CTVADIFDYIHRHEERAFVLK--FSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXX 183
D+F ++ R L+ + EIYN + DLL+ LR+L+D
Sbjct: 118 MASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGL 176
Query: 184 XXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243
++ + + +++++ A R G+T N SSRSH ++++ + R L
Sbjct: 177 QEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGR----------L 226
Query: 244 SASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGHINYRDSK 302
+ VDLAG+ER + S + + EG IN+SLL L IR L + + H +R+SK
Sbjct: 227 HGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNK-AHTPFRESK 285
Query: 303 LTRMLQ-PCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVT 347
LT++L+ +G N+RT +I +SP S E T NTL +A KE++
Sbjct: 286 LTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELS 331
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 164/353 (46%), Gaps = 48/353 (13%)
Query: 22 EEKILVLVRLRPLSEKEITADEATDWECI----NDTTILYRNTLR-------EGSTFPSA 70
E +I V VR RPL++KE + D + I D +++ + E TF
Sbjct: 88 EHRICVCVRKRPLNKKET---QMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFD 144
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 120
Y FD VY A+ + ++ ++ FAYGQT SGKT+TM
Sbjct: 145 YAFD----DSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 121 --TGITECTVADIFDYIHRHEERAFVLKFSA--MEIYNEAIRDLLSTDNTPLRLLDDPXX 176
GI D+F + + + L+ A EIY+ + DLL+ T LR+L+D
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNR-KTKLRVLEDGKQ 259
Query: 177 XXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 236
+K + +L+ I + R G+T N SSRSH + ++++ +
Sbjct: 260 QVQVVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGK---- 315
Query: 237 KENSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNG- 294
L + +DLAG+ER + S + + EG IN+SLL L IR L GRN
Sbjct: 316 ------LHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRAL--GRNKP 367
Query: 295 HINYRDSKLTRMLQPC-LGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346
H +R SKLT++L+ +G N+RT +I T+SP + E T NTL +A KE+
Sbjct: 368 HTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 166/345 (48%), Gaps = 50/345 (14%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR---EGSTFPSAYTF--DRVFWG 79
I V+VR RPLSE E + +D + + LY + R + + + + F D+VF
Sbjct: 2 IKVVVRKRPLSELE-KKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDD 60
Query: 80 DCSTTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMTG-----------ITECT 127
VYE+ K + + + +G S FAYGQT SGKTYTM G I +
Sbjct: 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYA 120
Query: 128 VADIFDYIHRHEE---RAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXX 184
DIF +++ +++ + + F EIY + DLL L
Sbjct: 121 AGDIFTFLNIYDKDNTKGIFISF--YEIYCGKLYDLLQKRKMVAAL---------ENGKK 169
Query: 185 XXILKDWNHLKEL------LSICEAQ--RRIGETLLNEKSSRSHQIIRLMIESSAREFLG 236
++KD L+ L L + + R+IG N++SSRSH I+ + ++
Sbjct: 170 EVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI------ 223
Query: 237 KENSTTLSASVNFVDLAGSERASQALSTGARLK-EGCHINRSLLTLSTVIRKLSKGRNGH 295
N T + F+DLAGSER + +S + + +G +INRSLL L IR + +N H
Sbjct: 224 --NKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN-H 280
Query: 296 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFA 340
I +RDS+LT++L+ G +++ +I +SP S EQT NTL ++
Sbjct: 281 IPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYS 325
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 116/244 (47%), Gaps = 23/244 (9%)
Query: 25 ILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTT 84
I V+ R RPL+E EI + + + T++ G P Y FDRV + +
Sbjct: 8 IKVMCRFRPLNEAEILRGDKFIPKFKGEETVVI------GQGKP--YVFDRVLPPNTTQE 59
Query: 85 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------TGITECTVADIFDYI 135
QVY AK+I V+ G N +IFAYGQTSSGKT+TM GI DIFD+I
Sbjct: 60 QVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHI 119
Query: 136 HRHEERA-FVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPXXXXXXXXXXXXILKDWNHL 194
+ +E F +K S EIY + IRDLL T L + +D + +
Sbjct: 120 YSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEV 179
Query: 195 KELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAG 254
+++ +A R + T +NE SSRSH I + I+ E LS + VDLAG
Sbjct: 180 MDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQE-----NVETEKKLSGKLYLVDLAG 234
Query: 255 SERA 258
SE+
Sbjct: 235 SEKV 238
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 131/291 (45%), Gaps = 33/291 (11%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 120
+ FD F S ++Y+ + ++ G + AYGQT +GK+Y+M
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 121 --TGITECTVADIFDYIHRHEER---AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPX 175
GI + DIF+ + +E A + S +EIYNE DLL + TP P
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS--TP----HMPM 176
Query: 176 XXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 235
L L +L + RR+ T +N SSRSH I+ + ++S
Sbjct: 177 VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----- 231
Query: 236 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH 295
T + +N VDLAGSE + G +EG +IN LL+++ V+ ++ G
Sbjct: 232 ------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV- 284
Query: 296 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346
I YRDS LT +LQ L + + +SP + + +T +TL F AK++
Sbjct: 285 IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 129/289 (44%), Gaps = 33/289 (11%)
Query: 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM---------- 120
+ FD F S ++Y+ + ++ G + AYGQT +GK+Y+M
Sbjct: 63 FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILP 122
Query: 121 --TGITECTVADIFDYIHRHEER---AFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPX 175
GI + DIF+ + +E A + S +EIYNE DLL + TP P
Sbjct: 123 EHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS--TP----HMPM 176
Query: 176 XXXXXXXXXXXILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 235
L L +L + RR+ T +N SSRSH I+ + ++S
Sbjct: 177 VAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----- 231
Query: 236 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH 295
T + +N VDLAGSE + G +EG +IN LL+++ V+ ++ G
Sbjct: 232 ------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV- 284
Query: 296 INYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAK 344
I YRDS LT +LQ L + + +SP + + +T +TL F AK
Sbjct: 285 IPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 17/114 (14%)
Query: 275 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTR 334
N+SL L VI L++G H+ YRDSK+TR+LQ LGGN RT I+ SP+ + +T+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 335 NTLLFACCAKEVTTKAQVNVVMS-----------------DKALVKHLQKELAR 371
+TL+F AK + VN+ ++ K++++HL+ EL R
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNR 114
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%)
Query: 273 HINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332
+IN+SL L VI L++G H+ YRDSK+TR+LQ L GN RT I+ SP+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 333 TRNTLLFACCAKEVTTKAQVNV 354
T++TL+F AK + VN+
Sbjct: 63 TKSTLMFGQRAKTIKNTVSVNL 84
>pdb|3HJA|A Chain A, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|B Chain B, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|C Chain C, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
pdb|3HJA|D Chain D, Crystal Structure Of Glyceraldehyde-3-Phosphate
Dehydrogenase From Borrelia Burgdorferi
Length = 356
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Query: 374 SELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDS 433
+ +R P P S D L+KKD+ +++ +R+ S +L ++G +D
Sbjct: 252 TSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRK--------ASETPELKGILGYTEDP 303
Query: 434 RQETGRNHNSHKQVSD 449
+ NSH + D
Sbjct: 304 IVSSDIKGNSHSSIVD 319
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 603 NGFTYGALEQRLNNVQKTIESLVSPYPD 630
NG ALEQ NV+KT E L +PD
Sbjct: 69 NGKAKEALEQARQNVEKTAEELRKAHPD 96
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGH-INYRDSK 302
S + FVDL GS+ A S GA L E H L L ++ L + G + + +
Sbjct: 9 SMDIEFVDLEGSDAHDLAYSLGASLGERLHQEVPDLDLKALVDGLKQAYQGKPLALKQER 68
Query: 303 LTRMLQPCLGGNARTAIICTLSPARSHVEQTR 334
+ ++L+ A+ T +P + ++ R
Sbjct: 69 IDQILREHDAAIAQAETAGTDAPTEAALKAER 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,765,502
Number of Sequences: 62578
Number of extensions: 759688
Number of successful extensions: 1591
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 78
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)