Query 004378
Match_columns 758
No_of_seqs 366 out of 1994
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 22:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0245 Kinesin-like protein [ 100.0 1.4E-90 3E-95 794.8 32.0 405 22-431 3-446 (1221)
2 KOG0243 Kinesin-like protein [ 100.0 1.1E-88 2.5E-93 792.3 33.1 360 18-382 44-426 (1041)
3 KOG4280 Kinesin-like protein [ 100.0 5E-88 1.1E-92 759.4 28.4 357 21-380 3-369 (574)
4 KOG0242 Kinesin-like protein [ 100.0 1.3E-87 2.8E-92 779.4 29.5 399 21-432 4-412 (675)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 5.5E-81 1.2E-85 687.3 31.3 338 21-368 5-353 (607)
6 PLN03188 kinesin-12 family pro 100.0 8.6E-81 1.9E-85 732.1 33.6 347 22-381 97-474 (1320)
7 KOG0241 Kinesin-like protein [ 100.0 1.7E-79 3.7E-84 691.2 32.0 406 22-430 3-433 (1714)
8 cd01370 KISc_KIP3_like Kinesin 100.0 3E-79 6.5E-84 664.1 28.3 321 24-346 1-338 (338)
9 cd01373 KISc_KLP2_like Kinesin 100.0 7.3E-79 1.6E-83 660.8 29.4 315 23-346 1-337 (337)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.3E-77 2.8E-82 653.0 29.0 317 23-344 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 2.5E-76 5.3E-81 645.2 29.8 329 23-353 1-356 (356)
12 cd01371 KISc_KIF3 Kinesin moto 100.0 5.6E-75 1.2E-79 629.3 30.0 322 23-346 1-333 (333)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 6.4E-75 1.4E-79 632.9 30.1 327 23-354 2-351 (352)
14 cd01367 KISc_KIF2_like Kinesin 100.0 5.9E-75 1.3E-79 626.6 28.6 311 23-344 1-322 (322)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 2.3E-74 5.1E-79 621.2 28.7 314 24-346 1-321 (321)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 6.9E-74 1.5E-78 618.3 29.6 314 23-346 2-325 (325)
17 cd01376 KISc_KID_like Kinesin 100.0 2.6E-73 5.7E-78 612.9 28.9 308 24-344 1-319 (319)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 2.5E-73 5.3E-78 617.5 28.7 316 24-347 2-341 (341)
19 cd01375 KISc_KIF9_like Kinesin 100.0 2.6E-72 5.7E-77 608.8 28.6 312 24-344 1-334 (334)
20 cd01366 KISc_C_terminal Kinesi 100.0 8.8E-71 1.9E-75 594.8 29.8 315 22-348 1-328 (329)
21 smart00129 KISc Kinesin motor, 100.0 3.3E-70 7.2E-75 591.2 29.0 325 24-353 1-335 (335)
22 KOG0239 Kinesin (KAR3 subfamil 100.0 2.4E-70 5.1E-75 633.6 24.6 325 22-353 313-647 (670)
23 cd00106 KISc Kinesin motor dom 100.0 8.2E-69 1.8E-73 578.0 29.7 317 24-344 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 4E-69 8.7E-74 582.0 19.9 316 30-346 1-335 (335)
25 KOG0246 Kinesin-like protein [ 100.0 1.8E-68 3.9E-73 586.4 23.6 326 16-351 201-546 (676)
26 KOG0247 Kinesin-like protein [ 100.0 8.3E-64 1.8E-68 562.5 32.8 328 20-353 28-443 (809)
27 KOG0244 Kinesin-like protein [ 100.0 1.7E-66 3.6E-71 598.8 10.7 336 31-380 1-350 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 4.1E-60 8.9E-65 544.1 28.0 317 21-354 20-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 9.9E-48 2.1E-52 384.4 16.4 173 86-325 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.0 9.9E-08 2.1E-12 111.4 -8.6 254 17-289 299-566 (568)
31 COG0556 UvrB Helicase subunit 94.9 0.026 5.6E-07 65.1 4.6 82 70-156 4-99 (663)
32 PF00308 Bac_DnaA: Bacterial d 94.9 0.036 7.8E-07 57.6 5.2 76 69-155 3-78 (219)
33 PRK14086 dnaA chromosomal repl 93.6 0.12 2.7E-06 61.3 6.4 53 68-123 282-334 (617)
34 PRK06893 DNA replication initi 92.4 0.12 2.7E-06 53.8 3.8 49 69-123 11-59 (229)
35 PRK06620 hypothetical protein; 90.3 0.18 3.9E-06 52.3 2.4 49 69-121 11-62 (214)
36 PRK12377 putative replication 89.9 0.19 4.1E-06 53.5 2.3 52 70-123 70-121 (248)
37 COG2805 PilT Tfp pilus assembl 89.8 0.2 4.4E-06 54.7 2.4 33 90-122 112-144 (353)
38 TIGR00362 DnaA chromosomal rep 89.6 0.8 1.7E-05 51.7 7.2 79 67-156 103-181 (405)
39 PRK00149 dnaA chromosomal repl 89.2 0.66 1.4E-05 53.2 6.1 53 67-122 115-167 (450)
40 PRK14088 dnaA chromosomal repl 88.7 0.67 1.5E-05 53.2 5.7 51 68-122 99-149 (440)
41 PRK06526 transposase; Provisio 88.3 0.2 4.3E-06 53.5 1.0 47 73-124 73-119 (254)
42 PRK09087 hypothetical protein; 88.1 0.38 8.2E-06 50.3 3.0 47 69-121 16-62 (226)
43 PRK08116 hypothetical protein; 88.0 0.36 7.7E-06 51.8 2.8 52 69-122 80-133 (268)
44 PRK08084 DNA replication initi 87.9 0.49 1.1E-05 49.6 3.7 49 69-123 17-65 (235)
45 PRK14087 dnaA chromosomal repl 87.9 0.67 1.5E-05 53.4 5.1 76 70-156 111-186 (450)
46 PRK05642 DNA replication initi 87.4 0.54 1.2E-05 49.3 3.6 48 69-123 14-65 (234)
47 PRK06835 DNA replication prote 87.2 0.22 4.8E-06 55.1 0.7 38 85-124 167-204 (329)
48 PRK07952 DNA replication prote 87.1 0.37 8E-06 51.2 2.3 52 70-123 68-119 (244)
49 TIGR03420 DnaA_homol_Hda DnaA 86.1 0.72 1.6E-05 47.0 3.7 49 68-122 9-57 (226)
50 COG0593 DnaA ATPase involved i 85.9 1.3 2.9E-05 50.4 6.0 84 68-162 81-164 (408)
51 PRK10884 SH3 domain-containing 85.5 3.3 7.2E-05 43.1 8.2 74 357-430 90-165 (206)
52 COG1474 CDC6 Cdc6-related prot 85.1 1.3 2.9E-05 49.7 5.5 44 87-138 26-69 (366)
53 COG2804 PulE Type II secretory 84.8 0.6 1.3E-05 54.2 2.6 33 90-122 245-277 (500)
54 PF04851 ResIII: Type III rest 84.3 0.7 1.5E-05 44.6 2.5 30 93-122 14-44 (184)
55 PRK08903 DnaA regulatory inact 83.9 1.1 2.4E-05 46.1 3.9 49 69-122 13-61 (227)
56 PRK00411 cdc6 cell division co 83.5 1.1 2.5E-05 49.7 4.1 21 100-120 52-72 (394)
57 PRK08181 transposase; Validate 83.5 0.68 1.5E-05 49.9 2.2 47 73-124 80-127 (269)
58 TIGR02928 orc1/cdc6 family rep 83.4 1.1 2.5E-05 49.2 3.9 21 100-120 37-57 (365)
59 cd00009 AAA The AAA+ (ATPases 83.1 0.98 2.1E-05 41.0 2.8 27 94-120 10-36 (151)
60 PRK08727 hypothetical protein; 82.9 1 2.2E-05 47.1 3.2 47 69-123 14-61 (233)
61 PRK08939 primosomal protein Dn 82.5 0.58 1.3E-05 51.3 1.2 52 71-123 124-176 (306)
62 TIGR00631 uvrb excinuclease AB 82.0 1 2.2E-05 54.5 3.0 82 71-157 2-97 (655)
63 KOG0239 Kinesin (KAR3 subfamil 82.0 1.1 2.5E-05 54.0 3.5 85 69-164 26-112 (670)
64 PF05673 DUF815: Protein of un 80.7 0.74 1.6E-05 49.1 1.2 129 70-223 23-155 (249)
65 cd00046 DEXDc DEAD-like helica 79.3 0.85 1.9E-05 41.0 1.0 18 106-123 3-20 (144)
66 PLN00020 ribulose bisphosphate 77.6 4.2 9.2E-05 46.1 5.9 52 69-120 110-165 (413)
67 PRK06921 hypothetical protein; 77.3 1.5 3.1E-05 47.2 2.2 34 90-123 101-137 (266)
68 COG1484 DnaC DNA replication p 77.3 2.2 4.8E-05 45.5 3.5 51 70-123 75-125 (254)
69 TIGR02538 type_IV_pilB type IV 76.8 1.4 3.1E-05 52.2 2.1 29 94-122 307-335 (564)
70 PF00270 DEAD: DEAD/DEAH box h 76.7 1.6 3.4E-05 41.9 2.1 26 94-121 7-32 (169)
71 PRK10436 hypothetical protein; 76.6 1.5 3.3E-05 50.8 2.3 29 94-122 209-237 (462)
72 TIGR02533 type_II_gspE general 76.5 1.6 3.6E-05 50.8 2.5 29 94-122 233-261 (486)
73 PF04420 CHD5: CHD5-like prote 75.9 18 0.00039 36.1 9.3 65 360-428 40-104 (161)
74 PF01935 DUF87: Domain of unkn 75.8 1.2 2.5E-05 46.0 0.9 19 106-124 26-44 (229)
75 smart00382 AAA ATPases associa 75.5 1.3 2.8E-05 39.7 1.0 19 104-122 3-21 (148)
76 smart00053 DYNc Dynamin, GTPas 75.3 8 0.00017 41.2 7.0 54 187-258 85-138 (240)
77 PTZ00112 origin recognition co 75.1 3 6.5E-05 51.8 4.2 21 101-121 779-799 (1164)
78 PF00437 T2SE: Type II/IV secr 74.9 1.5 3.2E-05 46.5 1.4 19 103-121 127-145 (270)
79 PTZ00454 26S protease regulato 74.9 2.9 6.3E-05 47.6 3.8 51 70-120 141-196 (398)
80 PRK12422 chromosomal replicati 74.1 3 6.5E-05 48.2 3.7 54 67-123 104-161 (445)
81 PF13401 AAA_22: AAA domain; P 74.0 1.2 2.6E-05 41.1 0.5 18 103-120 4-21 (131)
82 PF13245 AAA_19: Part of AAA d 73.8 2 4.4E-05 37.5 1.8 27 95-122 3-29 (76)
83 TIGR01420 pilT_fam pilus retra 73.7 2 4.3E-05 47.7 2.1 30 93-122 112-141 (343)
84 KOG0727 26S proteasome regulat 73.3 7.6 0.00017 41.9 6.1 126 14-139 88-248 (408)
85 PF12846 AAA_10: AAA-like doma 73.0 1.5 3.3E-05 45.9 1.0 19 103-121 1-19 (304)
86 KOG0989 Replication factor C, 73.0 3 6.5E-05 46.0 3.2 42 79-120 32-74 (346)
87 TIGR02525 plasmid_TraJ plasmid 72.9 2.2 4.8E-05 48.2 2.3 28 94-122 141-168 (372)
88 COG5008 PilU Tfp pilus assembl 72.9 2.6 5.7E-05 45.7 2.7 31 91-121 115-145 (375)
89 cd01131 PilT Pilus retraction 72.7 1.6 3.5E-05 44.4 1.1 18 104-121 2-19 (198)
90 TIGR03015 pepcterm_ATPase puta 72.6 3.1 6.7E-05 43.6 3.2 23 99-121 39-61 (269)
91 COG4962 CpaF Flp pilus assembl 72.4 4.4 9.5E-05 45.3 4.3 27 93-120 164-190 (355)
92 TIGR02524 dot_icm_DotB Dot/Icm 72.0 2.3 5E-05 47.7 2.2 25 98-122 129-153 (358)
93 cd01129 PulE-GspE PulE/GspE Th 72.0 2.6 5.6E-05 45.2 2.5 29 94-122 71-99 (264)
94 PRK03992 proteasome-activating 71.4 2.7 5.9E-05 47.5 2.5 51 70-120 127-182 (389)
95 PF01695 IstB_IS21: IstB-like 71.3 1.5 3.3E-05 44.2 0.5 21 103-123 47-67 (178)
96 PF13604 AAA_30: AAA domain; P 70.6 2.7 5.9E-05 42.8 2.1 28 94-121 9-36 (196)
97 PF01637 Arch_ATPase: Archaeal 69.2 2.7 5.8E-05 42.1 1.7 29 92-120 9-37 (234)
98 PRK09183 transposase/IS protei 68.7 2.8 6E-05 44.8 1.8 46 73-123 77-122 (259)
99 COG1222 RPT1 ATP-dependent 26S 68.0 3.2 7E-05 46.6 2.1 115 23-139 93-244 (406)
100 KOG2543 Origin recognition com 67.8 3.7 7.9E-05 46.5 2.5 39 104-155 31-69 (438)
101 PF06005 DUF904: Protein of un 67.0 42 0.0009 29.4 8.4 52 361-428 19-70 (72)
102 PF00004 AAA: ATPase family as 66.6 2.4 5.2E-05 38.8 0.7 15 106-120 1-15 (132)
103 TIGR02782 TrbB_P P-type conjug 65.6 3.8 8.2E-05 44.8 2.1 29 92-121 122-150 (299)
104 PRK13894 conjugal transfer ATP 65.6 3.8 8.3E-05 45.3 2.2 29 93-122 139-167 (319)
105 TIGR01242 26Sp45 26S proteasom 65.3 7.9 0.00017 43.1 4.6 52 70-121 118-174 (364)
106 PF00448 SRP54: SRP54-type pro 64.8 2.7 5.9E-05 43.1 0.8 17 105-121 3-19 (196)
107 PRK12402 replication factor C 64.8 5 0.00011 43.4 2.9 43 72-122 13-55 (337)
108 PF13479 AAA_24: AAA domain 64.4 3.3 7.3E-05 42.6 1.4 20 103-122 3-22 (213)
109 PF14282 FlxA: FlxA-like prote 64.2 32 0.0007 32.1 7.7 59 359-422 18-76 (106)
110 PHA02544 44 clamp loader, smal 64.2 5.6 0.00012 42.9 3.1 23 100-122 39-62 (316)
111 PF12325 TMF_TATA_bd: TATA ele 63.9 21 0.00046 34.2 6.5 36 396-431 60-95 (120)
112 smart00487 DEXDc DEAD-like hel 63.7 5.1 0.00011 38.3 2.4 26 96-122 18-43 (201)
113 PF13086 AAA_11: AAA domain; P 63.0 4.3 9.2E-05 40.6 1.8 29 95-124 10-38 (236)
114 cd00124 MYSc Myosin motor doma 62.5 58 0.0013 39.8 11.5 36 84-120 67-103 (679)
115 PF05970 PIF1: PIF1-like helic 62.1 5.6 0.00012 44.5 2.7 36 81-120 4-39 (364)
116 PTZ00361 26 proteosome regulat 61.6 12 0.00026 43.3 5.3 16 105-120 219-234 (438)
117 cd01382 MYSc_type_VI Myosin mo 61.6 84 0.0018 38.8 12.7 36 84-120 72-108 (717)
118 PHA00729 NTP-binding motif con 61.4 6.7 0.00014 41.5 2.9 33 91-123 5-37 (226)
119 PF13191 AAA_16: AAA ATPase do 61.3 3.3 7.2E-05 40.3 0.7 32 99-138 20-51 (185)
120 PF13207 AAA_17: AAA domain; P 61.3 3.7 8.1E-05 37.5 0.9 16 105-120 1-16 (121)
121 COG1223 Predicted ATPase (AAA+ 60.2 6.1 0.00013 42.9 2.4 17 104-120 152-168 (368)
122 PRK13900 type IV secretion sys 60.0 5.8 0.00013 44.1 2.3 29 92-121 150-178 (332)
123 PRK12723 flagellar biosynthesi 59.2 8.5 0.00018 43.8 3.5 20 103-122 174-193 (388)
124 COG1201 Lhr Lhr-like helicases 58.9 13 0.00029 46.0 5.2 51 94-153 30-85 (814)
125 PRK11637 AmiB activator; Provi 58.8 53 0.0012 37.6 9.8 32 396-427 95-126 (428)
126 KOG0651 26S proteasome regulat 58.8 10 0.00022 42.2 3.8 72 68-139 126-225 (388)
127 cd01130 VirB11-like_ATPase Typ 58.5 6.7 0.00015 39.4 2.3 29 92-121 15-43 (186)
128 cd00268 DEADc DEAD-box helicas 58.4 7.2 0.00015 38.9 2.5 23 95-119 30-52 (203)
129 cd01378 MYSc_type_I Myosin mot 58.2 68 0.0015 39.2 11.1 36 84-120 67-103 (674)
130 PRK13833 conjugal transfer pro 58.0 6.4 0.00014 43.7 2.2 29 93-122 135-163 (323)
131 PF01580 FtsK_SpoIIIE: FtsK/Sp 57.9 3.9 8.6E-05 41.3 0.5 18 105-122 40-57 (205)
132 PF00910 RNA_helicase: RNA hel 57.6 3.8 8.3E-05 37.5 0.3 26 106-135 1-26 (107)
133 PTZ00424 helicase 45; Provisio 57.0 6.6 0.00014 43.7 2.1 26 93-120 57-82 (401)
134 COG2433 Uncharacterized conser 56.5 24 0.00053 42.1 6.5 37 392-428 476-512 (652)
135 PRK11776 ATP-dependent RNA hel 56.2 7.4 0.00016 44.6 2.4 24 94-119 34-57 (460)
136 PRK11448 hsdR type I restricti 56.1 5 0.00011 51.5 1.1 41 88-129 419-459 (1123)
137 TIGR03499 FlhF flagellar biosy 56.1 11 0.00024 40.8 3.6 19 105-123 196-214 (282)
138 PRK06547 hypothetical protein; 56.0 9.6 0.00021 38.3 2.9 29 92-120 4-32 (172)
139 TIGR02903 spore_lon_C ATP-depe 56.0 7.6 0.00016 46.7 2.5 42 71-120 151-192 (615)
140 PRK07003 DNA polymerase III su 55.5 13 0.00029 45.7 4.4 18 103-120 38-55 (830)
141 PF07728 AAA_5: AAA domain (dy 55.5 4.7 0.0001 38.0 0.6 15 106-120 2-16 (139)
142 COG4096 HsdR Type I site-speci 55.2 46 0.001 41.3 8.8 36 90-126 173-208 (875)
143 COG3074 Uncharacterized protei 55.0 1.2E+02 0.0025 26.7 8.7 58 361-427 19-76 (79)
144 PF02388 FemAB: FemAB family; 55.0 39 0.00085 38.5 7.9 46 277-325 195-240 (406)
145 PF00580 UvrD-helicase: UvrD/R 54.8 5.8 0.00013 41.8 1.2 21 102-122 12-32 (315)
146 PF07724 AAA_2: AAA domain (Cd 54.6 5.8 0.00013 39.8 1.1 17 104-120 4-20 (171)
147 PF13671 AAA_33: AAA domain; P 54.1 5.6 0.00012 37.3 0.8 15 106-120 2-16 (143)
148 KOG0739 AAA+-type ATPase [Post 54.0 10 0.00022 41.9 2.8 69 72-140 131-226 (439)
149 PF00063 Myosin_head: Myosin h 53.8 8.9 0.00019 46.5 2.7 36 84-120 66-102 (689)
150 KOG0735 AAA+-type ATPase [Post 53.8 8.1 0.00017 47.0 2.2 18 103-120 701-718 (952)
151 PF02562 PhoH: PhoH-like prote 53.8 8.6 0.00019 40.0 2.2 19 102-120 18-36 (205)
152 TIGR01241 FtsH_fam ATP-depende 53.6 11 0.00023 44.0 3.2 51 70-121 51-106 (495)
153 PF10205 KLRAQ: Predicted coil 53.5 47 0.001 31.1 6.6 65 364-430 9-73 (102)
154 CHL00081 chlI Mg-protoporyphyr 53.5 6.6 0.00014 44.1 1.4 46 69-122 12-57 (350)
155 PF06048 DUF927: Domain of unk 53.3 11 0.00024 40.8 3.1 32 88-120 179-210 (286)
156 PRK11192 ATP-dependent RNA hel 52.5 9 0.0002 43.4 2.3 25 94-120 31-55 (434)
157 PF13238 AAA_18: AAA domain; P 52.3 6.1 0.00013 35.9 0.7 15 106-120 1-15 (129)
158 PF06309 Torsin: Torsin; Inte 52.3 7.8 0.00017 37.5 1.5 15 106-120 56-70 (127)
159 PRK13851 type IV secretion sys 52.2 6.4 0.00014 44.1 1.0 29 93-122 153-181 (344)
160 PF03215 Rad17: Rad17 cell cyc 52.2 9.6 0.00021 45.0 2.5 30 91-120 31-62 (519)
161 PRK13764 ATPase; Provisional 51.4 8.4 0.00018 46.2 1.9 21 102-122 256-276 (602)
162 PF07795 DUF1635: Protein of u 51.0 39 0.00084 35.5 6.4 36 389-424 25-60 (214)
163 PRK04837 ATP-dependent RNA hel 50.1 10 0.00022 43.0 2.2 25 94-120 38-62 (423)
164 PRK15422 septal ring assembly 49.8 1.3E+02 0.0029 27.0 8.5 59 361-428 19-77 (79)
165 TIGR02881 spore_V_K stage V sp 48.8 7.7 0.00017 41.1 0.9 20 103-122 42-61 (261)
166 PRK14961 DNA polymerase III su 48.5 12 0.00025 42.0 2.4 41 72-120 14-55 (363)
167 PRK10590 ATP-dependent RNA hel 48.4 12 0.00026 43.0 2.5 25 94-120 31-55 (456)
168 PRK13342 recombination factor 48.3 12 0.00025 42.7 2.3 45 72-121 10-54 (413)
169 TIGR00635 ruvB Holliday juncti 48.2 12 0.00026 40.1 2.3 39 82-121 8-48 (305)
170 PF06414 Zeta_toxin: Zeta toxi 48.2 8.5 0.00019 39.0 1.1 20 102-121 14-33 (199)
171 PRK00440 rfc replication facto 47.8 14 0.00031 39.5 2.9 22 100-121 35-56 (319)
172 KOG3990 Uncharacterized conser 47.7 56 0.0012 35.2 6.9 63 360-431 225-294 (305)
173 COG1419 FlhF Flagellar GTP-bin 47.5 14 0.00031 42.2 2.9 37 86-122 182-222 (407)
174 PF07693 KAP_NTPase: KAP famil 47.3 31 0.00068 37.1 5.4 56 90-153 4-63 (325)
175 KOG0340 ATP-dependent RNA heli 47.3 16 0.00035 41.1 3.1 47 93-148 36-82 (442)
176 PLN03025 replication factor C 47.2 15 0.00032 40.2 2.9 23 101-123 32-54 (319)
177 PRK11331 5-methylcytosine-spec 47.1 13 0.00029 43.2 2.5 27 92-120 185-211 (459)
178 PRK14722 flhF flagellar biosyn 47.0 8.9 0.00019 43.4 1.2 21 103-123 137-157 (374)
179 PHA02244 ATPase-like protein 46.7 23 0.00049 40.4 4.2 51 65-120 86-136 (383)
180 KOG1962 B-cell receptor-associ 45.5 86 0.0019 33.1 7.9 16 364-379 131-146 (216)
181 PRK00295 hypothetical protein; 45.5 1.7E+02 0.0036 25.3 8.4 32 392-423 21-52 (68)
182 TIGR01243 CDC48 AAA family ATP 44.8 41 0.00088 41.3 6.4 52 69-120 173-229 (733)
183 TIGR00348 hsdR type I site-spe 44.3 17 0.00036 44.2 3.0 34 90-124 246-284 (667)
184 PRK11637 AmiB activator; Provi 44.3 60 0.0013 37.2 7.3 28 401-428 93-120 (428)
185 smart00242 MYSc Myosin. Large 44.2 19 0.00041 43.9 3.4 36 84-120 73-109 (677)
186 PRK04195 replication factor C 44.1 12 0.00027 43.4 1.8 30 91-120 26-56 (482)
187 PF09726 Macoilin: Transmembra 43.9 54 0.0012 40.3 7.1 74 359-432 417-502 (697)
188 TIGR00614 recQ_fam ATP-depende 43.8 16 0.00035 42.2 2.6 25 94-120 19-43 (470)
189 TIGR00376 DNA helicase, putati 43.6 10 0.00023 45.8 1.1 20 105-124 175-194 (637)
190 PF15619 Lebercilin: Ciliary p 43.6 81 0.0018 32.6 7.4 68 358-427 59-134 (194)
191 PRK10536 hypothetical protein; 43.6 15 0.00032 39.8 2.1 41 70-120 51-91 (262)
192 PF12775 AAA_7: P-loop contain 43.5 14 0.00031 39.8 2.0 26 94-120 25-50 (272)
193 cd01120 RecA-like_NTPases RecA 43.4 10 0.00022 35.5 0.8 17 106-122 2-18 (165)
194 PF07106 TBPIP: Tat binding pr 43.2 1.4E+02 0.0031 29.6 9.0 13 279-291 33-45 (169)
195 PF05496 RuvB_N: Holliday junc 43.1 27 0.00058 37.2 3.9 43 72-119 22-66 (233)
196 PF00735 Septin: Septin; Inte 43.1 8.4 0.00018 41.8 0.2 20 100-119 1-20 (281)
197 cd01127 TrwB Bacterial conjuga 43.0 7 0.00015 44.4 -0.5 21 103-123 42-62 (410)
198 PF05729 NACHT: NACHT domain 42.8 12 0.00026 35.4 1.2 17 105-121 2-18 (166)
199 PRK11634 ATP-dependent RNA hel 42.8 15 0.00033 44.3 2.2 25 94-120 36-60 (629)
200 KOG0953 Mitochondrial RNA heli 42.7 15 0.00034 43.4 2.2 33 105-137 193-237 (700)
201 PF10236 DAP3: Mitochondrial r 42.5 18 0.00039 39.8 2.6 26 97-122 17-42 (309)
202 COG3883 Uncharacterized protei 42.2 91 0.002 33.9 7.7 68 361-430 39-106 (265)
203 KOG0729 26S proteasome regulat 42.1 15 0.00033 40.0 1.9 20 101-120 207-228 (435)
204 PRK11388 DNA-binding transcrip 41.7 34 0.00074 41.1 5.0 117 70-202 321-444 (638)
205 KOG2391 Vacuolar sorting prote 41.5 64 0.0014 36.2 6.5 66 361-428 219-284 (365)
206 PRK00080 ruvB Holliday junctio 41.4 17 0.00037 39.8 2.2 18 104-121 52-69 (328)
207 PF08657 DASH_Spc34: DASH comp 41.3 78 0.0017 34.3 7.1 57 360-416 194-258 (259)
208 PRK02119 hypothetical protein; 41.1 2E+02 0.0044 25.2 8.4 52 362-422 4-55 (73)
209 PRK04406 hypothetical protein; 41.0 2E+02 0.0044 25.3 8.4 16 362-377 6-21 (75)
210 KOG0730 AAA+-type ATPase [Post 41.0 17 0.00037 43.8 2.3 35 104-138 469-526 (693)
211 PF12240 Angiomotin_C: Angiomo 40.9 3.8E+02 0.0082 28.2 11.5 82 330-422 8-95 (205)
212 PRK10416 signal recognition pa 40.9 23 0.0005 39.2 3.2 19 103-121 114-132 (318)
213 PF08317 Spc7: Spc7 kinetochor 40.6 1.5E+02 0.0033 32.8 9.5 60 360-428 209-268 (325)
214 TIGR00618 sbcc exonuclease Sbc 40.5 18 0.00038 46.2 2.5 24 104-127 27-57 (1042)
215 TIGR01618 phage_P_loop phage n 40.5 12 0.00026 39.4 0.8 21 103-123 12-32 (220)
216 TIGR02902 spore_lonB ATP-depen 40.4 18 0.00039 42.8 2.3 41 71-119 62-102 (531)
217 cd01384 MYSc_type_XI Myosin mo 40.4 24 0.00053 43.0 3.5 36 84-120 69-105 (674)
218 COG1219 ClpX ATP-dependent pro 40.4 13 0.00029 41.4 1.1 17 104-120 98-114 (408)
219 KOG0726 26S proteasome regulat 40.0 27 0.00059 38.6 3.4 35 105-139 221-278 (440)
220 PF01486 K-box: K-box region; 39.9 2.1E+02 0.0045 26.1 8.7 69 360-428 19-99 (100)
221 KOG4196 bZIP transcription fac 39.8 1.1E+02 0.0025 29.8 7.1 62 366-427 46-118 (135)
222 cd01383 MYSc_type_VIII Myosin 39.7 26 0.00056 42.8 3.6 36 84-120 73-109 (677)
223 KOG3859 Septins (P-loop GTPase 39.7 20 0.00042 39.4 2.3 24 97-120 36-59 (406)
224 COG3598 RepA RecA-family ATPas 39.6 17 0.00037 40.6 1.8 80 73-157 60-142 (402)
225 KOG0993 Rab5 GTPase effector R 39.6 1.2E+02 0.0026 34.8 8.3 68 362-429 116-187 (542)
226 PF13555 AAA_29: P-loop contai 39.5 14 0.00031 31.4 0.9 15 106-120 26-40 (62)
227 PRK00771 signal recognition pa 39.4 32 0.0007 39.8 4.1 20 103-122 95-114 (437)
228 PF14257 DUF4349: Domain of un 39.3 1.7E+02 0.0037 31.1 9.4 96 315-429 94-194 (262)
229 COG1198 PriA Primosomal protei 39.3 18 0.00039 44.4 2.2 17 101-117 215-231 (730)
230 PRK04537 ATP-dependent RNA hel 39.2 19 0.0004 43.0 2.2 25 94-120 39-63 (572)
231 CHL00195 ycf46 Ycf46; Provisio 39.2 18 0.00039 42.5 2.1 17 104-120 260-276 (489)
232 cd01385 MYSc_type_IX Myosin mo 39.1 25 0.00055 43.0 3.4 36 84-120 75-111 (692)
233 smart00763 AAA_PrkA PrkA AAA d 38.9 31 0.00068 39.0 3.8 46 70-120 45-95 (361)
234 PRK14974 cell division protein 38.9 34 0.00073 38.3 4.0 20 103-122 140-159 (336)
235 TIGR02640 gas_vesic_GvpN gas v 38.8 26 0.00056 37.4 3.0 28 91-120 11-38 (262)
236 PF04102 SlyX: SlyX; InterPro 38.8 1.6E+02 0.0035 25.3 7.3 32 393-424 21-52 (69)
237 cd01850 CDC_Septin CDC/Septin. 38.7 15 0.00033 39.6 1.3 21 100-120 1-21 (276)
238 PF13476 AAA_23: AAA domain; P 38.7 14 0.00031 36.1 1.1 17 104-120 20-36 (202)
239 TIGR02030 BchI-ChlI magnesium 38.7 20 0.00043 40.1 2.2 43 71-121 1-43 (337)
240 PLN00206 DEAD-box ATP-dependen 38.6 24 0.00052 41.4 3.0 26 93-120 150-175 (518)
241 PRK04325 hypothetical protein; 38.6 2.1E+02 0.0046 25.1 8.2 52 363-423 5-56 (74)
242 TIGR02237 recomb_radB DNA repa 38.5 18 0.00039 36.6 1.7 25 96-120 2-29 (209)
243 PF13173 AAA_14: AAA domain 38.4 15 0.00032 34.5 1.0 16 105-120 4-19 (128)
244 PRK10865 protein disaggregatio 38.3 19 0.00042 45.0 2.3 17 104-120 599-615 (857)
245 cd01381 MYSc_type_VII Myosin m 38.2 28 0.00061 42.5 3.5 36 84-120 67-103 (671)
246 KOG4348 Adaptor protein CMS/SE 37.9 1.4E+02 0.0031 34.6 8.6 67 349-427 558-624 (627)
247 PRK14962 DNA polymerase III su 37.7 21 0.00045 41.7 2.3 41 72-120 12-53 (472)
248 cd02021 GntK Gluconate kinase 37.6 15 0.00032 35.0 0.9 15 106-120 2-16 (150)
249 cd01387 MYSc_type_XV Myosin mo 37.5 29 0.00063 42.4 3.5 36 84-120 68-104 (677)
250 PRK01297 ATP-dependent RNA hel 37.3 20 0.00043 41.4 2.1 26 93-120 116-141 (475)
251 PF08826 DMPK_coil: DMPK coile 37.2 2E+02 0.0042 24.6 7.4 31 388-418 30-60 (61)
252 cd01428 ADK Adenylate kinase ( 37.2 17 0.00038 35.9 1.4 28 106-133 2-35 (194)
253 PF02456 Adeno_IVa2: Adenoviru 37.1 15 0.00031 40.9 0.8 16 106-121 90-105 (369)
254 COG0419 SbcC ATPase involved i 37.0 28 0.00061 43.7 3.5 23 104-126 26-55 (908)
255 TIGR02788 VirB11 P-type DNA tr 36.9 23 0.0005 38.7 2.4 30 91-121 133-162 (308)
256 PRK05703 flhF flagellar biosyn 36.8 15 0.00033 42.1 1.0 19 105-123 223-241 (424)
257 cd01377 MYSc_type_II Myosin mo 36.7 30 0.00065 42.4 3.5 36 84-120 72-108 (693)
258 PRK09270 nucleoside triphospha 36.7 34 0.00074 35.5 3.5 36 85-120 14-50 (229)
259 TIGR01243 CDC48 AAA family ATP 36.6 22 0.00049 43.5 2.4 16 105-120 489-504 (733)
260 PRK04328 hypothetical protein; 36.5 25 0.00054 37.2 2.5 29 91-119 8-39 (249)
261 PRK13341 recombination factor 36.4 24 0.00052 43.4 2.6 46 72-122 26-71 (725)
262 TIGR01360 aden_kin_iso1 adenyl 36.4 24 0.00052 34.6 2.2 29 105-133 5-39 (188)
263 COG2256 MGS1 ATPase related to 36.2 21 0.00047 40.8 2.0 44 72-120 22-65 (436)
264 cd01123 Rad51_DMC1_radA Rad51_ 36.0 21 0.00045 36.6 1.8 29 92-120 5-36 (235)
265 KOG2373 Predicted mitochondria 35.9 28 0.0006 39.4 2.7 27 93-120 261-290 (514)
266 cd01380 MYSc_type_V Myosin mot 35.9 31 0.00066 42.3 3.4 36 84-120 67-103 (691)
267 PRK00131 aroK shikimate kinase 35.9 18 0.00039 34.8 1.2 17 104-120 5-21 (175)
268 PF12329 TMF_DNA_bd: TATA elem 35.7 2E+02 0.0044 25.2 7.5 36 392-427 35-70 (74)
269 TIGR01817 nifA Nif-specific re 35.7 22 0.00048 41.8 2.1 45 70-120 192-236 (534)
270 PF10412 TrwB_AAD_bind: Type I 35.7 8.3 0.00018 43.6 -1.4 18 105-122 17-34 (386)
271 TIGR03819 heli_sec_ATPase heli 35.3 25 0.00055 39.2 2.4 30 91-121 167-196 (340)
272 PHA02653 RNA helicase NPH-II; 35.2 28 0.0006 42.5 2.9 26 93-120 171-196 (675)
273 PRK06696 uridine kinase; Valid 35.2 34 0.00075 35.3 3.2 29 92-120 8-39 (223)
274 TIGR03158 cas3_cyano CRISPR-as 35.1 27 0.00058 39.0 2.6 26 95-120 6-31 (357)
275 KOG1803 DNA helicase [Replicat 34.9 19 0.00041 43.0 1.4 20 104-123 202-221 (649)
276 PF04977 DivIC: Septum formati 34.9 89 0.0019 26.6 5.3 28 396-423 23-50 (80)
277 TIGR01359 UMP_CMP_kin_fam UMP- 34.8 18 0.00039 35.6 1.1 15 106-120 2-16 (183)
278 PRK06995 flhF flagellar biosyn 34.8 17 0.00037 42.6 1.0 19 104-122 257-275 (484)
279 KOG0354 DEAD-box like helicase 34.8 28 0.00061 42.7 2.8 27 91-120 67-93 (746)
280 PRK06067 flagellar accessory p 34.5 26 0.00056 36.3 2.2 30 91-120 10-42 (234)
281 CHL00176 ftsH cell division pr 34.5 20 0.00043 43.5 1.5 18 104-121 217-234 (638)
282 TIGR03752 conj_TIGR03752 integ 34.3 2E+02 0.0043 33.8 9.2 28 400-427 112-139 (472)
283 COG0606 Predicted ATPase with 34.1 33 0.00071 40.2 3.0 35 91-126 187-224 (490)
284 PRK07261 topology modulation p 34.0 19 0.00041 35.8 1.0 15 106-120 3-17 (171)
285 TIGR02894 DNA_bind_RsfA transc 33.9 2E+02 0.0044 29.1 8.1 35 394-428 115-149 (161)
286 smart00489 DEXDc3 DEAD-like he 33.6 42 0.00091 36.5 3.7 35 80-120 10-44 (289)
287 smart00488 DEXDc2 DEAD-like he 33.6 42 0.00091 36.5 3.7 35 80-120 10-44 (289)
288 COG1125 OpuBA ABC-type proline 33.6 19 0.0004 39.2 0.9 13 108-120 32-44 (309)
289 KOG2035 Replication factor C, 33.5 1.9E+02 0.004 32.2 8.3 30 91-120 21-51 (351)
290 PRK10820 DNA-binding transcrip 33.1 25 0.00055 41.4 2.0 46 69-120 199-244 (520)
291 TIGR02746 TraC-F-type type-IV 33.0 18 0.00039 44.5 0.9 20 103-122 430-449 (797)
292 KOG0926 DEAH-box RNA helicase 33.0 24 0.00053 43.5 1.9 18 103-120 271-288 (1172)
293 cd01126 TraG_VirD4 The TraG/Tr 32.8 22 0.00048 39.8 1.4 21 106-128 2-22 (384)
294 PF06156 DUF972: Protein of un 32.7 2.7E+02 0.0058 26.3 8.3 34 392-425 24-57 (107)
295 TIGR02880 cbbX_cfxQ probable R 32.7 19 0.00041 39.0 0.9 16 105-120 60-75 (284)
296 cd00464 SK Shikimate kinase (S 32.6 20 0.00044 33.9 1.0 16 105-120 1-16 (154)
297 COG3829 RocR Transcriptional r 32.5 31 0.00068 40.9 2.6 43 68-116 239-281 (560)
298 TIGR02173 cyt_kin_arch cytidyl 32.5 33 0.00073 33.0 2.5 16 105-120 2-17 (171)
299 PRK10917 ATP-dependent DNA hel 32.4 33 0.00072 41.8 2.9 21 100-120 279-299 (681)
300 CHL00181 cbbX CbbX; Provisiona 32.4 20 0.00043 39.0 1.0 15 106-120 62-76 (287)
301 PRK11889 flhF flagellar biosyn 32.4 39 0.00085 39.0 3.3 19 104-122 242-260 (436)
302 PRK05580 primosome assembly pr 32.3 24 0.00052 43.0 1.7 17 104-120 163-179 (679)
303 PF10146 zf-C4H2: Zinc finger- 32.3 2.2E+02 0.0049 30.3 8.7 49 360-417 32-80 (230)
304 PHA02624 large T antigen; Prov 32.3 36 0.00077 41.1 3.0 30 93-122 419-450 (647)
305 COG3879 Uncharacterized protei 32.2 2.8E+02 0.0062 29.9 9.4 81 331-429 23-107 (247)
306 PRK11057 ATP-dependent DNA hel 32.1 29 0.00063 41.6 2.3 25 94-120 33-57 (607)
307 TIGR01650 PD_CobS cobaltochela 32.0 31 0.00068 38.5 2.4 44 75-120 37-81 (327)
308 KOG0335 ATP-dependent RNA heli 31.7 22 0.00048 41.5 1.2 22 98-121 108-129 (482)
309 KOG1514 Origin recognition com 31.7 32 0.00069 42.0 2.5 30 94-123 411-442 (767)
310 PF12774 AAA_6: Hydrolytic ATP 31.6 49 0.0011 35.0 3.7 35 105-139 34-85 (231)
311 PF02367 UPF0079: Uncharacteri 31.6 39 0.00084 32.5 2.7 32 90-123 4-35 (123)
312 COG5019 CDC3 Septin family pro 31.6 26 0.00057 39.6 1.7 21 100-120 20-40 (373)
313 PF05529 Bap31: B-cell recepto 31.6 1.5E+02 0.0034 30.0 7.2 34 393-426 157-190 (192)
314 PF15254 CCDC14: Coiled-coil d 31.6 1.3E+02 0.0029 37.1 7.5 30 401-430 438-467 (861)
315 COG1126 GlnQ ABC-type polar am 31.5 22 0.00048 37.8 1.1 23 98-120 17-45 (240)
316 PRK15429 formate hydrogenlyase 31.5 28 0.00061 42.3 2.1 44 71-120 373-416 (686)
317 PRK00846 hypothetical protein; 31.5 3.4E+02 0.0073 24.3 8.2 53 363-424 9-61 (77)
318 TIGR01313 therm_gnt_kin carboh 31.4 18 0.0004 34.9 0.5 14 106-119 1-14 (163)
319 PRK15483 type III restriction- 31.3 76 0.0016 40.4 5.7 12 111-122 67-78 (986)
320 TIGR03744 traC_PFL_4706 conjug 31.1 20 0.00044 45.0 0.8 23 101-123 473-495 (893)
321 PRK08118 topology modulation p 31.1 23 0.00049 35.2 1.1 14 106-119 4-17 (167)
322 PRK10803 tol-pal system protei 31.0 1.6E+02 0.0034 31.8 7.4 60 366-427 39-98 (263)
323 PRK14531 adenylate kinase; Pro 30.9 25 0.00055 35.1 1.4 16 105-120 4-19 (183)
324 PF10458 Val_tRNA-synt_C: Valy 30.9 93 0.002 26.4 4.6 16 361-376 5-20 (66)
325 PRK13767 ATP-dependent helicas 30.9 30 0.00065 43.5 2.3 23 96-120 42-64 (876)
326 TIGR02894 DNA_bind_RsfA transc 30.8 3.9E+02 0.0085 27.1 9.5 13 278-290 30-42 (161)
327 PRK06305 DNA polymerase III su 30.7 32 0.00069 39.9 2.3 42 72-121 15-57 (451)
328 PRK14964 DNA polymerase III su 30.7 30 0.00064 40.7 2.0 41 72-120 11-52 (491)
329 PF14662 CCDC155: Coiled-coil 30.6 1.2E+02 0.0026 31.6 6.0 16 362-377 38-53 (193)
330 cd01379 MYSc_type_III Myosin m 30.6 42 0.00091 40.9 3.4 36 84-120 67-103 (653)
331 COG0464 SpoVK ATPases of the A 30.6 43 0.00094 38.8 3.4 20 101-120 274-293 (494)
332 COG0630 VirB11 Type IV secreto 30.6 21 0.00045 39.4 0.8 20 102-121 142-161 (312)
333 TIGR02322 phosphon_PhnN phosph 30.6 23 0.0005 34.9 1.0 17 105-121 3-19 (179)
334 TIGR03238 dnd_assoc_3 dnd syst 30.6 30 0.00066 40.6 2.1 27 95-121 18-50 (504)
335 PF08614 ATG16: Autophagy prot 30.4 4.1E+02 0.0088 27.2 10.1 52 360-420 116-167 (194)
336 cd01386 MYSc_type_XVIII Myosin 30.2 42 0.00091 41.6 3.3 36 84-120 67-103 (767)
337 KOG0994 Extracellular matrix g 30.2 2.9E+02 0.0063 36.0 10.1 45 333-380 1177-1221(1758)
338 PRK09361 radB DNA repair and r 30.1 38 0.00082 34.7 2.5 31 91-121 8-41 (225)
339 TIGR01389 recQ ATP-dependent D 30.1 35 0.00076 40.6 2.6 26 93-120 20-45 (591)
340 cd01983 Fer4_NifH The Fer4_Nif 30.0 25 0.00054 29.7 1.0 17 106-122 2-18 (99)
341 COG4942 Membrane-bound metallo 30.0 1.2E+02 0.0025 35.2 6.5 8 319-326 25-32 (420)
342 PRK15424 propionate catabolism 29.9 30 0.00066 41.1 2.0 45 70-120 215-259 (538)
343 cd02020 CMPK Cytidine monophos 29.7 25 0.00055 32.8 1.1 15 106-120 2-16 (147)
344 cd00820 PEPCK_HprK Phosphoenol 29.7 26 0.00057 32.9 1.1 17 104-120 16-32 (107)
345 PRK08233 hypothetical protein; 29.6 25 0.00053 34.3 1.0 16 105-120 5-20 (182)
346 PF08317 Spc7: Spc7 kinetochor 29.6 2.5E+02 0.0055 31.1 9.0 61 362-422 186-248 (325)
347 TIGR03185 DNA_S_dndD DNA sulfu 29.5 1.9E+02 0.0042 35.0 8.7 16 105-120 30-45 (650)
348 PF00931 NB-ARC: NB-ARC domain 29.4 48 0.001 34.9 3.2 30 91-120 5-36 (287)
349 PTZ00110 helicase; Provisional 29.3 34 0.00074 40.5 2.3 25 94-120 160-184 (545)
350 PRK02793 phi X174 lysis protei 29.2 3.6E+02 0.0078 23.5 8.0 50 365-423 6-55 (72)
351 TIGR03817 DECH_helic helicase/ 29.1 34 0.00073 42.2 2.3 25 94-120 44-68 (742)
352 TIGR00643 recG ATP-dependent D 29.0 37 0.00079 41.0 2.5 20 101-120 254-273 (630)
353 cd01393 recA_like RecA is a b 29.0 38 0.00081 34.6 2.3 31 91-121 4-37 (226)
354 cd01124 KaiC KaiC is a circadi 28.9 26 0.00057 34.3 1.1 15 106-120 2-16 (187)
355 TIGR01351 adk adenylate kinase 28.9 36 0.00078 34.7 2.1 29 106-134 2-36 (210)
356 TIGR00602 rad24 checkpoint pro 28.9 36 0.00077 41.4 2.3 17 105-121 112-128 (637)
357 PF03668 ATP_bind_2: P-loop AT 28.7 55 0.0012 35.9 3.5 32 105-136 3-45 (284)
358 cd02023 UMPK Uridine monophosp 28.7 24 0.00053 35.4 0.8 15 106-120 2-16 (198)
359 KOG0250 DNA repair protein RAD 28.6 2.3E+02 0.005 36.4 9.1 63 360-430 372-434 (1074)
360 PRK12726 flagellar biosynthesi 28.6 26 0.00056 40.2 1.1 20 104-123 207-226 (407)
361 PRK12724 flagellar biosynthesi 28.5 50 0.0011 38.3 3.3 19 104-122 224-242 (432)
362 TIGR02329 propionate_PrpR prop 28.5 31 0.00068 40.9 1.8 46 69-120 207-252 (526)
363 PF04548 AIG1: AIG1 family; I 28.5 25 0.00055 36.1 0.9 16 105-120 2-17 (212)
364 cd01394 radB RadB. The archaea 28.5 44 0.00095 34.0 2.7 29 93-121 6-37 (218)
365 PHA01747 putative ATP-dependen 28.4 28 0.00061 39.6 1.3 34 87-120 174-207 (425)
366 PRK14721 flhF flagellar biosyn 28.3 27 0.00058 40.3 1.1 20 103-122 191-210 (420)
367 PRK06217 hypothetical protein; 28.3 27 0.00057 34.9 1.0 15 106-120 4-18 (183)
368 KOG0995 Centromere-associated 28.3 2.9E+02 0.0062 33.2 9.3 54 362-421 310-363 (581)
369 TIGR02688 conserved hypothetic 28.3 19 0.00041 41.7 -0.1 25 100-126 208-232 (449)
370 PRK11664 ATP-dependent RNA hel 28.3 42 0.00091 41.9 2.9 28 91-120 10-37 (812)
371 TIGR00064 ftsY signal recognit 28.3 30 0.00065 37.4 1.5 19 104-122 73-91 (272)
372 TIGR00231 small_GTP small GTP- 28.3 25 0.00055 31.9 0.8 16 105-120 3-18 (161)
373 TIGR02397 dnaX_nterm DNA polym 28.3 45 0.00097 36.4 2.9 24 97-120 29-53 (355)
374 TIGR03689 pup_AAA proteasome A 28.1 25 0.00055 41.5 0.9 16 105-120 218-233 (512)
375 PRK04296 thymidine kinase; Pro 28.1 16 0.00035 37.0 -0.6 20 105-124 4-23 (190)
376 PRK14723 flhF flagellar biosyn 28.0 28 0.00061 43.0 1.3 19 104-122 186-204 (767)
377 KOG2228 Origin recognition com 27.8 74 0.0016 36.0 4.3 70 80-153 30-121 (408)
378 PF08477 Miro: Miro-like prote 27.8 26 0.00055 31.6 0.7 15 106-120 2-16 (119)
379 PRK14955 DNA polymerase III su 27.7 37 0.00081 38.5 2.1 40 72-120 14-55 (397)
380 PF00485 PRK: Phosphoribulokin 27.7 25 0.00055 35.4 0.7 15 106-120 2-16 (194)
381 KOG2129 Uncharacterized conser 27.7 2.4E+02 0.0052 32.6 8.2 21 358-378 251-271 (552)
382 PRK10867 signal recognition pa 27.5 61 0.0013 37.6 3.8 20 103-122 100-119 (433)
383 PRK01172 ski2-like helicase; P 27.3 40 0.00087 40.8 2.4 21 97-119 33-53 (674)
384 PRK11034 clpA ATP-dependent Cl 27.3 52 0.0011 40.8 3.4 18 103-120 488-505 (758)
385 PRK09111 DNA polymerase III su 27.3 36 0.00079 41.0 2.0 27 94-120 36-63 (598)
386 TIGR03263 guanyl_kin guanylate 27.3 29 0.00063 34.0 1.1 16 105-120 3-18 (180)
387 KOG1962 B-cell receptor-associ 27.2 4.4E+02 0.0096 28.0 9.6 38 392-429 174-211 (216)
388 TIGR03881 KaiC_arch_4 KaiC dom 27.2 43 0.00093 34.4 2.3 29 93-121 7-38 (229)
389 PRK14970 DNA polymerase III su 27.1 49 0.0011 36.8 2.9 42 72-121 15-57 (367)
390 PRK13729 conjugal transfer pil 27.1 1.5E+02 0.0033 34.7 6.9 13 645-657 276-288 (475)
391 KOG0330 ATP-dependent RNA heli 27.1 36 0.00078 38.9 1.8 26 93-120 90-115 (476)
392 PLN02199 shikimate kinase 27.0 86 0.0019 34.7 4.7 31 87-120 89-119 (303)
393 PF14389 Lzipper-MIP1: Leucine 26.9 2.9E+02 0.0063 25.0 7.3 29 391-419 55-83 (88)
394 PRK00300 gmk guanylate kinase; 26.8 30 0.00066 34.7 1.1 18 103-120 5-22 (205)
395 PF14532 Sigma54_activ_2: Sigm 26.8 32 0.0007 32.7 1.2 21 100-120 18-38 (138)
396 COG1220 HslU ATP-dependent pro 26.5 25 0.00054 39.7 0.4 62 105-166 52-140 (444)
397 TIGR00929 VirB4_CagE type IV s 26.5 28 0.00062 42.6 1.0 20 103-122 434-453 (785)
398 COG1579 Zn-ribbon protein, pos 26.3 2.6E+02 0.0056 30.1 7.9 32 399-430 112-143 (239)
399 PRK05416 glmZ(sRNA)-inactivati 26.2 77 0.0017 34.7 4.2 16 105-120 8-23 (288)
400 COG1122 CbiO ABC-type cobalt t 26.2 34 0.00073 36.4 1.3 22 104-125 31-55 (235)
401 PF14584 DUF4446: Protein of u 26.2 2.3E+02 0.005 28.3 7.1 44 387-430 43-86 (151)
402 PF07015 VirC1: VirC1 protein; 26.0 4.8E+02 0.01 28.0 9.8 27 319-345 109-135 (231)
403 KOG0652 26S proteasome regulat 26.0 53 0.0011 35.9 2.7 16 105-120 207-222 (424)
404 PF08700 Vps51: Vps51/Vps67; 26.0 3.8E+02 0.0082 23.3 7.8 60 360-424 26-85 (87)
405 PRK09039 hypothetical protein; 26.0 3.2E+02 0.0069 30.7 9.0 15 362-376 139-153 (343)
406 KOG1547 Septin CDC10 and relat 26.0 68 0.0015 34.7 3.5 21 99-119 42-62 (336)
407 KOG4603 TBP-1 interacting prot 25.8 1.5E+02 0.0033 30.4 5.7 63 361-425 80-144 (201)
408 PRK11131 ATP-dependent RNA hel 25.8 43 0.00093 43.8 2.4 33 85-120 74-106 (1294)
409 PRK02496 adk adenylate kinase; 25.8 47 0.001 32.9 2.3 29 106-134 4-38 (184)
410 PRK14952 DNA polymerase III su 25.7 40 0.00086 40.6 2.0 41 72-120 11-52 (584)
411 PF12709 Kinetocho_Slk19: Cent 25.5 2.4E+02 0.0052 25.8 6.4 39 389-427 48-86 (87)
412 cd02025 PanK Pantothenate kina 25.5 23 0.00049 36.9 -0.1 13 108-120 4-16 (220)
413 PRK14532 adenylate kinase; Pro 25.3 33 0.00073 34.0 1.1 29 105-133 2-36 (188)
414 PF00158 Sigma54_activat: Sigm 25.2 37 0.00081 33.9 1.4 93 100-202 19-121 (168)
415 TIGR03877 thermo_KaiC_1 KaiC d 25.1 51 0.0011 34.5 2.4 27 93-119 8-37 (237)
416 TIGR02639 ClpA ATP-dependent C 25.0 59 0.0013 40.0 3.3 17 104-120 485-501 (731)
417 COG1136 SalX ABC-type antimicr 24.7 32 0.00069 36.5 0.8 23 98-120 20-48 (226)
418 smart00787 Spc7 Spc7 kinetocho 24.5 4.3E+02 0.0093 29.4 9.6 37 392-428 227-263 (312)
419 TIGR01587 cas3_core CRISPR-ass 24.4 88 0.0019 34.3 4.3 15 106-120 2-16 (358)
420 PF12718 Tropomyosin_1: Tropom 24.4 2E+02 0.0044 28.2 6.3 37 390-426 101-137 (143)
421 PRK14951 DNA polymerase III su 24.3 45 0.00096 40.4 2.0 41 72-120 14-55 (618)
422 PRK05342 clpX ATP-dependent pr 24.3 36 0.00078 39.1 1.2 18 103-120 108-125 (412)
423 TIGR00763 lon ATP-dependent pr 24.1 39 0.00086 41.8 1.6 16 105-120 349-364 (775)
424 PLN03137 ATP-dependent DNA hel 24.1 48 0.001 42.8 2.3 28 91-120 465-492 (1195)
425 PRK10078 ribose 1,5-bisphospho 24.1 35 0.00076 34.1 1.0 16 105-120 4-19 (186)
426 PF07106 TBPIP: Tat binding pr 24.1 67 0.0014 32.0 3.0 23 402-424 114-136 (169)
427 PRK05896 DNA polymerase III su 24.0 45 0.00097 40.3 1.9 41 72-120 14-55 (605)
428 PRK04040 adenylate kinase; Pro 24.0 36 0.00077 34.6 1.0 16 105-120 4-19 (188)
429 PRK06851 hypothetical protein; 24.0 47 0.001 37.7 2.0 31 90-120 17-47 (367)
430 PRK05298 excinuclease ABC subu 23.9 66 0.0014 39.1 3.4 85 69-158 3-101 (652)
431 PF03961 DUF342: Protein of un 23.9 3.2E+02 0.007 31.6 8.9 25 398-422 383-407 (451)
432 PF01926 MMR_HSR1: 50S ribosom 23.8 32 0.00069 31.2 0.6 15 106-120 2-16 (116)
433 PRK00736 hypothetical protein; 23.8 4.7E+02 0.01 22.5 8.6 28 395-422 24-51 (68)
434 TIGR01425 SRP54_euk signal rec 23.8 69 0.0015 37.1 3.4 19 103-121 100-118 (429)
435 PTZ00014 myosin-A; Provisional 23.8 69 0.0015 40.1 3.6 34 86-120 166-200 (821)
436 TIGR02639 ClpA ATP-dependent C 23.7 35 0.00077 41.9 1.1 34 93-126 193-226 (731)
437 TIGR03117 cas_csf4 CRISPR-asso 23.7 53 0.0011 39.9 2.5 32 83-120 2-33 (636)
438 PRK14528 adenylate kinase; Pro 23.7 43 0.00092 33.8 1.5 30 105-134 3-38 (186)
439 cd03274 ABC_SMC4_euk Eukaryoti 23.7 37 0.0008 35.1 1.1 17 105-121 27-43 (212)
440 TIGR00382 clpX endopeptidase C 23.7 37 0.0008 39.1 1.1 17 104-120 117-133 (413)
441 PLN02200 adenylate kinase fami 23.7 43 0.00092 35.3 1.5 30 104-133 44-79 (234)
442 PRK14960 DNA polymerase III su 23.6 47 0.001 40.6 2.0 41 72-120 13-54 (702)
443 PRK05022 anaerobic nitric oxid 23.5 48 0.001 38.9 2.1 43 72-120 185-227 (509)
444 PF14553 YqbF: YqbF, hypotheti 23.4 76 0.0016 25.3 2.5 25 115-139 3-33 (43)
445 PRK06762 hypothetical protein; 23.4 40 0.00086 32.7 1.2 15 105-119 4-18 (166)
446 cd03279 ABC_sbcCD SbcCD and ot 23.3 39 0.00084 34.6 1.1 19 104-122 29-47 (213)
447 COG2204 AtoC Response regulato 23.3 1.2E+02 0.0026 35.6 5.2 96 100-205 161-266 (464)
448 smart00338 BRLZ basic region l 23.3 2.4E+02 0.0053 23.5 5.8 27 398-424 27-53 (65)
449 COG3839 MalK ABC-type sugar tr 23.3 35 0.00075 38.3 0.8 15 106-120 32-46 (338)
450 TIGR02768 TraA_Ti Ti-type conj 23.2 51 0.0011 40.7 2.3 28 94-122 360-387 (744)
451 PRK00279 adk adenylate kinase; 23.2 38 0.00083 34.7 1.1 30 105-134 2-37 (215)
452 COG3842 PotA ABC-type spermidi 23.1 35 0.00076 38.5 0.8 13 108-120 36-48 (352)
453 PF10923 DUF2791: P-loop Domai 23.0 68 0.0015 37.0 3.1 28 93-120 39-66 (416)
454 PRK00736 hypothetical protein; 23.0 4.9E+02 0.011 22.4 7.7 37 395-431 17-53 (68)
455 PF00170 bZIP_1: bZIP transcri 23.0 2.7E+02 0.0058 23.2 6.0 35 393-427 22-56 (64)
456 KOG0744 AAA+-type ATPase [Post 22.9 64 0.0014 36.4 2.7 20 103-122 177-196 (423)
457 PRK03839 putative kinase; Prov 22.9 38 0.00083 33.4 1.0 15 106-120 3-17 (180)
458 TIGR02236 recomb_radA DNA repa 22.9 64 0.0014 35.1 2.7 30 92-121 81-113 (310)
459 COG2607 Predicted ATPase (AAA+ 22.8 1.6E+02 0.0034 32.1 5.4 104 96-223 77-188 (287)
460 PRK14530 adenylate kinase; Pro 22.8 39 0.00084 34.6 1.0 29 105-133 5-39 (215)
461 PRK13873 conjugal transfer ATP 22.8 32 0.0007 42.7 0.5 19 104-122 442-460 (811)
462 PRK14729 miaA tRNA delta(2)-is 22.7 42 0.00091 37.0 1.3 42 105-162 6-47 (300)
463 cd02027 APSK Adenosine 5'-phos 22.7 38 0.00083 32.8 0.9 15 106-120 2-16 (149)
464 PRK13889 conjugal transfer rel 22.7 52 0.0011 42.0 2.3 27 93-120 353-379 (988)
465 TIGR01613 primase_Cterm phage/ 22.7 35 0.00077 37.1 0.7 28 93-120 63-93 (304)
466 TIGR03752 conj_TIGR03752 integ 22.7 1.7E+02 0.0037 34.3 6.2 30 395-424 114-143 (472)
467 PRK00888 ftsB cell division pr 22.6 2.2E+02 0.0047 26.6 5.8 53 362-430 29-81 (105)
468 PRK05563 DNA polymerase III su 22.5 58 0.0013 38.9 2.5 41 72-120 14-55 (559)
469 cd00071 GMPK Guanosine monopho 22.5 38 0.00081 32.5 0.8 14 106-119 2-15 (137)
470 PF03193 DUF258: Protein of un 22.5 50 0.0011 33.2 1.7 28 93-122 27-54 (161)
471 PRK13721 conjugal transfer ATP 22.5 37 0.0008 42.5 0.9 20 103-122 449-468 (844)
472 PF06745 KaiC: KaiC; InterPro 22.5 43 0.00093 34.3 1.3 25 95-119 8-35 (226)
473 PF09726 Macoilin: Transmembra 22.5 3.9E+02 0.0084 33.1 9.4 29 398-426 489-517 (697)
474 PF04859 DUF641: Plant protein 22.5 2.5E+02 0.0053 27.6 6.3 6 293-298 33-38 (131)
475 cd03240 ABC_Rad50 The catalyti 22.3 40 0.00086 34.5 1.0 16 105-120 24-39 (204)
476 PF04859 DUF641: Plant protein 22.3 5.3E+02 0.012 25.3 8.6 98 330-428 17-118 (131)
477 PRK14958 DNA polymerase III su 22.2 53 0.0011 38.8 2.1 41 72-120 14-55 (509)
478 PRK06731 flhF flagellar biosyn 22.2 43 0.00094 36.3 1.3 20 104-123 76-95 (270)
479 PF01745 IPT: Isopentenyl tran 22.2 38 0.00082 36.0 0.8 15 106-120 4-18 (233)
480 TIGR00678 holB DNA polymerase 22.1 66 0.0014 32.0 2.5 24 97-120 7-31 (188)
481 PF13747 DUF4164: Domain of un 22.1 5.3E+02 0.011 23.4 8.0 60 358-423 6-65 (89)
482 PRK06645 DNA polymerase III su 22.1 61 0.0013 38.3 2.6 23 98-120 37-60 (507)
483 PRK14527 adenylate kinase; Pro 22.1 44 0.00096 33.5 1.3 30 104-133 7-42 (191)
484 cd03272 ABC_SMC3_euk Eukaryoti 22.0 43 0.00094 34.6 1.2 17 105-121 25-41 (243)
485 PRK12727 flagellar biosynthesi 22.0 41 0.00089 40.1 1.1 20 104-123 351-370 (559)
486 smart00338 BRLZ basic region l 22.0 3.3E+02 0.0071 22.7 6.3 37 391-427 27-63 (65)
487 PF04466 Terminase_3: Phage te 21.9 30 0.00065 39.2 0.0 17 106-122 5-21 (387)
488 PRK13853 type IV secretion sys 21.9 37 0.0008 42.1 0.8 19 103-121 426-444 (789)
489 KOG0390 DNA repair protein, SN 21.9 99 0.0022 38.4 4.3 51 82-140 242-293 (776)
490 TIGR00235 udk uridine kinase. 21.9 38 0.00083 34.4 0.8 17 104-120 7-23 (207)
491 TIGR03345 VI_ClpV1 type VI sec 21.8 80 0.0017 39.7 3.6 17 104-120 597-613 (852)
492 COG0467 RAD55 RecA-superfamily 21.7 61 0.0013 34.2 2.2 19 102-120 22-40 (260)
493 KOG1532 GTPase XAB1, interacts 21.7 1E+02 0.0023 34.0 3.9 37 103-147 19-55 (366)
494 PRK10884 SH3 domain-containing 21.6 4.3E+02 0.0093 27.7 8.4 34 392-425 134-167 (206)
495 PRK10246 exonuclease subunit S 21.6 66 0.0014 41.3 2.9 23 104-126 31-60 (1047)
496 PF02534 T4SS-DNA_transf: Type 21.6 57 0.0012 37.4 2.1 17 104-120 45-61 (469)
497 KOG0804 Cytoplasmic Zn-finger 21.6 3.4E+02 0.0074 31.8 8.1 63 362-430 384-447 (493)
498 PRK13531 regulatory ATPase Rav 21.5 63 0.0014 38.1 2.5 29 90-120 28-56 (498)
499 PF07989 Microtub_assoc: Micro 21.4 5.3E+02 0.011 22.8 7.6 56 365-421 19-74 (75)
500 TIGR01447 recD exodeoxyribonuc 21.3 56 0.0012 39.3 2.1 27 92-120 151-177 (586)
No 1
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.4e-90 Score=794.76 Aligned_cols=405 Identities=33% Similarity=0.494 Sum_probs=355.1
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCC-------CChhHHHhhhhHHH
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGD-------CSTTQVYEDGAKEI 94 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~-------asQ~eVy~~~v~pl 94 (758)
...|+|+||||||+.+|...+..+++.+.++++.+.+.... .....|+||++||.. ++|.+||+.++.++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~---k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~m 79 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGS---KDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREM 79 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCc---ccCCceecceeeecCCCCCCchhhHHHHHHHHhHHH
Confidence 45799999999999999998888888888777665544322 223359999999986 68999999999999
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC--------CCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccC-C
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG--------ITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLS-T 163 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G--------ii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~-~ 163 (758)
++++|+|||+||||||||||||||||+| |||+.+++||.+|.... +..|.|.|||||||||+|+|||+ |
T Consensus 80 L~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p 159 (1221)
T KOG0245|consen 80 LDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAP 159 (1221)
T ss_pred HHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCC
Confidence 9999999999999999999999999974 99999999999998644 56899999999999999999998 4
Q ss_pred C-CCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCcee
Q 004378 164 D-NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242 (758)
Q Consensus 164 ~-~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~ 242 (758)
. +.+|++||+|..|+||++|+...|.|+.++..++..|++.|++++|+||++|||||+||+|++.+....... +....
T Consensus 160 ~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~-~l~se 238 (1221)
T KOG0245|consen 160 KSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDT-GLDSE 238 (1221)
T ss_pred CCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccC-CCcce
Confidence 4 468999999999999999999999999999999999999999999999999999999999999987655432 24467
Q ss_pred EEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC------CCCcccCCCCcccccccccCCCCcc
Q 004378 243 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG------RNGHINYRDSKLTRMLQPCLGGNAR 316 (758)
Q Consensus 243 ~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~------~~~hIPYRdSKLTrLLqdsLGGNsk 316 (758)
..|+|+|||||||||++.+++.|+|||||++|||||++||+||.||++. +..+||||||.|||||++.||||||
T Consensus 239 k~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSK 318 (1221)
T KOG0245|consen 239 KVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSK 318 (1221)
T ss_pred eeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcch
Confidence 8899999999999999999999999999999999999999999999752 3348999999999999999999999
Q ss_pred eeEEeecCCCcccHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCc-----------
Q 004378 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASST----------- 385 (758)
Q Consensus 317 T~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~~----------- 385 (758)
|+|||+|||++.||+|||+|||||+|||+|+|+|+||+.++.+ +|++|++|+++|+..|+........
T Consensus 319 TaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~ 397 (1221)
T KOG0245|consen 319 TAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQ 397 (1221)
T ss_pred hhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCCccccccc
Confidence 9999999999999999999999999999999999999999887 8999999999999999866544322
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 004378 386 ---CDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 431 (758)
Q Consensus 386 ---~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~~ 431 (758)
......|.+.+.++..|++.++|.-++-+....+-+.+++.+|...
T Consensus 398 ~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair~e~~~~L~emGva~ 446 (1221)
T KOG0245|consen 398 PEIEELRERLQETEKIMAELNETWEEKLREAEAIRMEREALLAEMGVAV 446 (1221)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcee
Confidence 1234556667777777888887777666666666667788877664
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-88 Score=792.34 Aligned_cols=360 Identities=37% Similarity=0.586 Sum_probs=327.8
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCCCceEeeC-CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHH
Q 004378 18 PSAREEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIAL 96 (758)
Q Consensus 18 ~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~ 96 (758)
+...+.+|+|+|||||++.+|.....+.++.|.+ .+-|.++..... ..-.+.|+||+||+|.+.|++||+.++.|+|.
T Consensus 44 ~~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~s-k~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~ 122 (1041)
T KOG0243|consen 44 HKEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIAS-KQIDKTFTFDKVFGPESQQEDLYDQAVSPIIK 122 (1041)
T ss_pred CCCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEeccccc-ccccceeecceeeCcchhHHHHHHHHHHHHHH
Confidence 3455679999999999999999888888999988 555888776432 22468999999999999999999999999999
Q ss_pred HhhcCCCeeEEeeccCCCCcccccCC--------------CCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccC
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTMTG--------------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLS 162 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM~G--------------ii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~ 162 (758)
.|+.|||||||||||||+||||||.| ||||++.+||+.+.... .+|.|+|||+|+|||.|+|||+
T Consensus 123 eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa 201 (1041)
T KOG0243|consen 123 EVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLA 201 (1041)
T ss_pred HHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcC
Confidence 99999999999999999999999964 99999999999999776 7999999999999999999998
Q ss_pred CCCC---CCccccCC-----CCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccc
Q 004378 163 TDNT---PLRLLDDP-----EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREF 234 (758)
Q Consensus 163 ~~~~---~l~i~ed~-----~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~ 234 (758)
+... .+++.+++ .+|++|.||.++.|.++.++..+|.+|.+.|++++|.||.+|||||+||+|+|......
T Consensus 202 ~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t- 280 (1041)
T KOG0243|consen 202 SEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENT- 280 (1041)
T ss_pred CccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCC-
Confidence 7643 45565555 68999999999999999999999999999999999999999999999999999765432
Q ss_pred cCCCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCC
Q 004378 235 LGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGN 314 (758)
Q Consensus 235 ~~~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGN 314 (758)
..+..-...|||+||||||||..+++|+.+.|.+|++.||+||++||+||+||.++ .+|||||+|||||||||||||.
T Consensus 281 -~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~-s~HIPYRESKLTRLLQDSLGGk 358 (1041)
T KOG0243|consen 281 -PEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH-SGHIPYRESKLTRLLQDSLGGK 358 (1041)
T ss_pred -CcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc-CCCCCchHHHHHHHHHHHhCCC
Confidence 23444567899999999999999999999999999999999999999999999995 5699999999999999999999
Q ss_pred cceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCCCC
Q 004378 315 ARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPA 382 (758)
Q Consensus 315 skT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~ 382 (758)
+||+|||||||+..+++||++||.||.|||.|+|+|.+|+.+..+.+++.|-.||.+|+.+|...+..
T Consensus 359 TKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReK 426 (1041)
T KOG0243|consen 359 TKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREK 426 (1041)
T ss_pred ceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999866544
No 3
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=5e-88 Score=759.38 Aligned_cols=357 Identities=41% Similarity=0.576 Sum_probs=322.0
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCceEeeCC-cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 21 REEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
...+|+|+||+||++..+........+.+... ..+.+.++.......++.|+||+||+++++|++||+.++.|+|++|+
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 45789999999999998876665544444332 33444444333334467899999999999999999999999999999
Q ss_pred cCCCeeEEeeccCCCCcccccC-------CCCcchHHHHHHHHHhccc-cceEEEeehhhhhhhhhhcccCCCC-CCCcc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT-------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDN-TPLRL 170 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~-------Gii~rav~dLF~~i~~~~~-~~~~V~vS~lEIYnE~V~DLL~~~~-~~l~i 170 (758)
+|||+||||||||||||||||. ||+|+++.+||..|...++ ..|.|++||+|||||.|+|||++.. +.+.+
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~l 162 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLEL 162 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCcee
Confidence 9999999999999999999996 5899999999999997764 4699999999999999999999988 58999
Q ss_pred ccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEE
Q 004378 171 LDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFV 250 (758)
Q Consensus 171 ~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fV 250 (758)
++++..|+||+||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++... ...+......++|+||
T Consensus 163 re~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~--~~~~~~~~~~~rlnlv 240 (574)
T KOG4280|consen 163 REDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEK--SDGGLMSGRSSKLNLV 240 (574)
T ss_pred eEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecc--cCCCccccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999998322 2334556788999999
Q ss_pred EcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccH
Q 004378 251 DLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 330 (758)
Q Consensus 251 DLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~ 330 (758)
|||||||..++++.|.|+||+.+||+||++||+||.+|++++++||||||||||+||||||||||+|+|||||+|+..++
T Consensus 241 DLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~ 320 (574)
T KOG4280|consen 241 DLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNY 320 (574)
T ss_pred eccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhh
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCC
Q 004378 331 EQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPA 380 (758)
Q Consensus 331 eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~ 380 (758)
+||++||+||+|||.|+|+|.+|+++. .+++++|++||++|+.+|...+
T Consensus 321 ~ETlsTLrfA~Rak~I~nk~~ined~~-~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 321 EETLSTLRFAQRAKAIKNKPVINEDPK-DALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcc-hhhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999976 4689999999999999987543
No 4
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.3e-87 Score=779.44 Aligned_cols=399 Identities=54% Similarity=0.773 Sum_probs=363.1
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCC--CCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHh
Q 004378 21 REEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL--REGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~--~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~v 98 (758)
...+|.|+|||||++++|...++.+.|.+.++..+...... +.... +..|.||+||+++++|++||+.+++|||.+|
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~ 82 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSK-PEKYEFDRVFGEESTQEDVYERTTKPLLLSV 82 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeecccccccccc-ccceeeeeecCCCCCHHHHHHhccHHHHHHH
Confidence 46789999999999999888889999999999998776532 22222 6799999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCcccccCC------CCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCCCCCcccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~G------ii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~e 172 (758)
+.|||+||||||||||||||||.| ++|+++.+||++|....++.|.|+|||+|||||.|+|||+++..+++|++
T Consensus 83 l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irE 162 (675)
T KOG0242|consen 83 LEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLRE 162 (675)
T ss_pred hcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeE
Confidence 999999999999999999999975 78999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEc
Q 004378 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (758)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDL 252 (758)
|+.+|++|.||+++.|.|+++++.||..|+++|+++.|.+|..|||||+||+|.|++...... . ..++|+||||
T Consensus 163 D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-----~-~~s~L~lIDL 236 (675)
T KOG0242|consen 163 DSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-----S-RVSKLNLIDL 236 (675)
T ss_pred cCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-----c-hhheehhhhh
Confidence 999999999999999999999999999999999999999999999999999999998765422 1 7789999999
Q ss_pred CCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC-CCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHH
Q 004378 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (758)
Q Consensus 253 AGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~e 331 (758)
|||||+.++++.|.|++||++||+||++||+||++|+++ ..+||||||||||||||++||||++|+|||||+|+..+++
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~ 316 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYE 316 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHH
Confidence 999999999999999999999999999999999999998 5669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHH-HHHHHHH
Q 004378 332 QTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKME-REIRELT 410 (758)
Q Consensus 332 ETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le-~ei~el~ 410 (758)
||.+||+||+|||.|++++.+|+...++.+++.+++++..|+.++...+...... +..+..+.+++ ++..++.
T Consensus 317 eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~~~~~~~~~------~~~~~~~~~~e~~~~~~~~ 390 (675)
T KOG0242|consen 317 ETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELERLKKKLEPE------REQELLIQKLEKEEVEELL 390 (675)
T ss_pred HHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHhhccccccc------hhhHHHHhHhhhhhHhhhh
Confidence 9999999999999999999999999999999999999999999998755443211 24566677777 7788888
Q ss_pred HHHHHHHHHHHHHHHHhccCCC
Q 004378 411 KQRDLAQSRVEDLLRMVGCDQD 432 (758)
Q Consensus 411 ~q~~~~q~~~~~l~~~~~~~~~ 432 (758)
.+++.++...+.+.........
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~ 412 (675)
T KOG0242|consen 391 PQRSEIQSLVELLKRLSASRRE 412 (675)
T ss_pred hhhhHHHHHHHHHhhhccccch
Confidence 8888888888887777766543
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=5.5e-81 Score=687.34 Aligned_cols=338 Identities=39% Similarity=0.542 Sum_probs=309.9
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCceEeeC-CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 21 REEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
.+.+|+|+||+||++..|...+.....-..+ ..++.+... .+.+.|.||+||.|+++|++||+.++.|+|++||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~-----~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL 79 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT-----KETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVL 79 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc-----cccccceeeeecCCCccHHHHHHHHHHHHHHHHh
Confidence 5678999999999999998766554433334 455555433 1236899999999999999999999999999999
Q ss_pred cCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhccc-cceEEEeehhhhhhhhhhcccCCCCCCCc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDNTPLR 169 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~~~-~~~~V~vS~lEIYnE~V~DLL~~~~~~l~ 169 (758)
.|||+||||||||||||||||. ||+||++.+||++|..... ..|.|+|||+|||+|+|+|||++.+.++.
T Consensus 80 ~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nls 159 (607)
T KOG0240|consen 80 LGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLS 159 (607)
T ss_pred cccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCce
Confidence 9999999999999999999995 6899999999999997664 68999999999999999999999999999
Q ss_pred cccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEE
Q 004378 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (758)
Q Consensus 170 i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~f 249 (758)
+++|...+++|.|+++..|.+++++++++..|..+|+++.|.||.+|||||.||+|+|.+... .....+.|+|.|
T Consensus 160 vheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~-----e~~~~~~gkLyL 234 (607)
T KOG0240|consen 160 VHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENV-----EDKRKLSGKLYL 234 (607)
T ss_pred eecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccc-----cchhhccccEEE
Confidence 999999999999999999999999999999999999999999999999999999999998753 344578899999
Q ss_pred EEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCccc
Q 004378 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (758)
Q Consensus 250 VDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~ 329 (758)
|||||||+.+++++.|.-+.|+.+||+||.|||+||++|+.+...|||||||||||||||+|||||||.||+|+||+..+
T Consensus 235 VDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n 314 (607)
T KOG0240|consen 235 VDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLN 314 (607)
T ss_pred EEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHH
Q 004378 330 VEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKE 368 (758)
Q Consensus 330 ~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~E 368 (758)
-.||.+||+|+.|||.|+|.+.+|...+..+..+.|+.+
T Consensus 315 ~~ET~STl~fg~rak~ikN~v~~n~e~~~e~~~r~~e~~ 353 (607)
T KOG0240|consen 315 EAETKSTLRFGNRAKTIKNTVWVNLELTAEEWKRKLEKK 353 (607)
T ss_pred ccccccchhhccccccccchhhhhhHhhHHHHHHHHHHH
Confidence 999999999999999999999999998887777766543
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=8.6e-81 Score=732.12 Aligned_cols=347 Identities=37% Similarity=0.576 Sum_probs=308.0
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcC
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G 101 (758)
..+|+|+|||||+++.|. +... +....+.++.+. .+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~i-V~~~s~dsl~I~---------~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdG 164 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMI-VQKMSNDSLTIN---------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAG 164 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCee-EEEcCCCeEEEe---------CcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 569999999999998863 3333 333445555542 2489999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCcccccCC----------------CCcchHHHHHHHHHhc------cccceEEEeehhhhhhhhhhc
Q 004378 102 INSSIFAYGQTSSGKTYTMTG----------------ITECTVADIFDYIHRH------EERAFVLKFSAMEIYNEAIRD 159 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G----------------ii~rav~dLF~~i~~~------~~~~~~V~vS~lEIYnE~V~D 159 (758)
||+||||||||||||||||+| |+||++.+||..|... ....|.|+|||+|||||+|||
T Consensus 165 yNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~D 244 (1320)
T PLN03188 165 FNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITD 244 (1320)
T ss_pred CcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCccee
Confidence 999999999999999999965 7899999999999743 245799999999999999999
Q ss_pred ccCCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCC
Q 004378 160 LLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (758)
Q Consensus 160 LL~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~ 239 (758)
||++....+.|++++.+|++|.||+++.|.+++++..+|..|..+|++++|.+|..|||||+||+|+|++..... ..+.
T Consensus 245 LLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~-~dg~ 323 (1320)
T PLN03188 245 LLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSV-ADGL 323 (1320)
T ss_pred ccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeeccc-CCCC
Confidence 999988899999999999999999999999999999999999999999999999999999999999998754332 1223
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhcc----CCCCcccCCCCcccccccccCCCCc
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK----GRNGHINYRDSKLTRMLQPCLGGNA 315 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~----~~~~hIPYRdSKLTrLLqdsLGGNs 315 (758)
.....|+|+|||||||||...+++.|.+++|+++||+||++||+||.+|+. ++..||||||||||+||||+|||||
T Consensus 324 ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNS 403 (1320)
T PLN03188 324 SSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNA 403 (1320)
T ss_pred cceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCc
Confidence 345689999999999999999999999999999999999999999999975 3456999999999999999999999
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceeccccCH-----HHHHHHHHHHHHHHHHHhcCCCC
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSD-----KALVKHLQKELARLESELRSPAP 381 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~-----~~li~~Lq~Ei~~L~~eL~~~~~ 381 (758)
+|+|||||||+..+++||++||+||+|||.|+|+|++|..+.+ ..+|++|++||.+|+.....+..
T Consensus 404 KTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p~~ 474 (1320)
T PLN03188 404 KLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKANGNNPTN 474 (1320)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999987643 35788899999999988655443
No 7
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-79 Score=691.21 Aligned_cols=406 Identities=31% Similarity=0.488 Sum_probs=351.5
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCC---CCCCCCCcccccCeecCCC-------CChhHHHhhhh
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL---REGSTFPSAYTFDRVFWGD-------CSTTQVYEDGA 91 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~---~~~s~~~~~F~FD~VF~~~-------asQ~eVy~~~v 91 (758)
..+|+|+|||||++.+|+.....+++.+....+++...+. ...+..+++|.||++|++. +.|+.||+.++
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 5689999999999999998888888888877776654322 1233568999999999985 58999999999
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHh--ccccceEEEeehhhhhhhhhhcccCC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHR--HEERAFVLKFSAMEIYNEAIRDLLST 163 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~--~~~~~~~V~vS~lEIYnE~V~DLL~~ 163 (758)
..+|+++|+|||+||||||||||||||||+ ||||+.+..||..|.. .+...|.|.|||+|||||++||||+|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 999999999999999999999999999997 4999999999999985 44678999999999999999999988
Q ss_pred CC--CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCce
Q 004378 164 DN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (758)
Q Consensus 164 ~~--~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~ 241 (758)
.. +.++++++.-.|.||.||++..|.|++++..++..|++.|++++|+||..|||||+||.|.|.+.-.+. ..+.+.
T Consensus 163 k~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~-ktg~Sg 241 (1714)
T KOG0241|consen 163 KGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDL-KTGHSG 241 (1714)
T ss_pred CCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEecc-ccCcch
Confidence 65 579999999999999999999999999999999999999999999999999999999999999876543 233445
Q ss_pred eEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC-----CCCcccCCCCcccccccccCCCCcc
Q 004378 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-----RNGHINYRDSKLTRMLQPCLGGNAR 316 (758)
Q Consensus 242 ~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----~~~hIPYRdSKLTrLLqdsLGGNsk 316 (758)
...++|.|||||||||+.++++.|.|++||.+||+||.+||.||.+|+.. +..+||||||.|||||||+|||||+
T Consensus 242 eKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsr 321 (1714)
T KOG0241|consen 242 EKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSR 321 (1714)
T ss_pred hheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCce
Confidence 67899999999999999999999999999999999999999999999753 4558999999999999999999999
Q ss_pred eeEEeecCCCcccHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHH
Q 004378 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKD 396 (758)
Q Consensus 317 T~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~ 396 (758)
|+||+||||+..+|+||++|||||.|||+|+|.+.+|...... .+++|++|+..|+.+|.+... ....+....+.+.+
T Consensus 322 TvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnar-virElReEve~lr~qL~~ae~-~~~~el~e~l~ese 399 (1714)
T KOG0241|consen 322 TVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-VIRELREEVEKLREQLEQAEA-MKLPELKEKLEESE 399 (1714)
T ss_pred eEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHH-HHHHHHHHHHHHHHHHhhhhh-ccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997664 799999999999999987332 22444555666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 397 LQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 397 ~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.-|+++...++|-....+...++.+..+..+|+.
T Consensus 400 kli~ei~~twEEkl~ktE~in~erq~~L~~~gis 433 (1714)
T KOG0241|consen 400 KLIKEITVTWEEKLRKTEEINQERQAQLESMGIS 433 (1714)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666655555555555555555555555544
No 8
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=3e-79 Score=664.13 Aligned_cols=321 Identities=40% Similarity=0.622 Sum_probs=296.0
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCC--------CCCCCCcccccCeecCCCCChhHHHhhhhHHHH
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--------EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--------~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV 95 (758)
+|+|+|||||++++|...+....|.+.++.++++..... .....++.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 599999999999999888888889998888777754322 123346799999999999999999999999999
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccCC------CCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCCCCC
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPL 168 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~G------ii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~l 168 (758)
+++++|||+||||||||||||||||+| |+|+++++||+.+.... ...|.|++||+|||||+|+|||++...++
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 999999999999999999999999975 89999999999999766 67899999999999999999999888899
Q ss_pred ccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEE
Q 004378 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (758)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~ 248 (758)
.+++++.++++|.|++++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|.+..... ........|+|+
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~--~~~~~~~~s~l~ 238 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTA--SINQQVRIGKLS 238 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCC--CCCCcEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999998765421 123457789999
Q ss_pred EEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCC--CCcccCCCCcccccccccCCCCcceeEEeecCCC
Q 004378 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPA 326 (758)
Q Consensus 249 fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~--~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs 326 (758)
|||||||||..+++..|.+++|+++||+||++|++||.+|+.++ ..||||||||||+||||+||||++|+|||||||+
T Consensus 239 ~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~ 318 (338)
T cd01370 239 LIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPS 318 (338)
T ss_pred EEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCc
Confidence 99999999999999999999999999999999999999999876 3799999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcc
Q 004378 327 RSHVEQTRNTLLFACCAKEV 346 (758)
Q Consensus 327 ~~~~eETlsTLrFA~rAk~I 346 (758)
..+++||++||+||+|||+|
T Consensus 319 ~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 319 SSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999986
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=7.3e-79 Score=660.84 Aligned_cols=315 Identities=38% Similarity=0.572 Sum_probs=283.6
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCC
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI 102 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~ 102 (758)
.+|+|+|||||+.+.|...+....+....+.++.+... .++.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~------~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~ 74 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH------PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGY 74 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC------CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 47999999999999987554554555555555554332 146899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCcccccCC--------------CCcchHHHHHHHHHhc-----cccceEEEeehhhhhhhhhhcccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG--------------ITECTVADIFDYIHRH-----EERAFVLKFSAMEIYNEAIRDLLST 163 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G--------------ii~rav~dLF~~i~~~-----~~~~~~V~vS~lEIYnE~V~DLL~~ 163 (758)
|+||||||||||||||||+| |+|+++++||..+... ....|.|++||+|||||+|+|||++
T Consensus 75 n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 75 NGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred ceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCC
Confidence 99999999999999999965 7899999999998754 3457899999999999999999999
Q ss_pred CCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeE
Q 004378 164 DNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTL 243 (758)
Q Consensus 164 ~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~ 243 (758)
....+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+.... .......
T Consensus 155 ~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~~~~ 231 (337)
T cd01373 155 TSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKK---ASSTNIR 231 (337)
T ss_pred CCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecC---CCCCcEE
Confidence 8889999999999999999999999999999999999999999999999999999999999999875432 1222456
Q ss_pred EEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhcc---CCCCcccCCCCcccccccccCCCCcceeEE
Q 004378 244 SASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK---GRNGHINYRDSKLTRMLQPCLGGNARTAII 320 (758)
Q Consensus 244 ~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~---~~~~hIPYRdSKLTrLLqdsLGGNskT~mI 320 (758)
.|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++ ++..||||||||||+||||+||||++|+||
T Consensus 232 ~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I 311 (337)
T cd01373 232 TSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTII 311 (337)
T ss_pred EEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEE
Confidence 79999999999999999999999999999999999999999999975 346799999999999999999999999999
Q ss_pred eecCCCcccHHHHHHHHHHHHHhhcc
Q 004378 321 CTLSPARSHVEQTRNTLLFACCAKEV 346 (758)
Q Consensus 321 atISPs~~~~eETlsTLrFA~rAk~I 346 (758)
|||||+..+++||++||+||.|||+|
T Consensus 312 ~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 312 ANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.3e-77 Score=653.01 Aligned_cols=317 Identities=33% Similarity=0.517 Sum_probs=289.5
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCC--------CCCCCCcccccCeecCCCCChhHHHhhhhHHH
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--------EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEI 94 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--------~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~pl 94 (758)
.+|+|+|||||+.+.|...++...|.+.++.+|.+..+.. .....++.|.||+||+++++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999999887788888889999988876432 12345679999999999999999999999999
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC------CCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCC---
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--- 165 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G------ii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~--- 165 (758)
|+++++|||+||||||||||||||||+| |+|+++++||+.+.. |.|++||+|||||+|+|||++..
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~ 155 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSST 155 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccc
Confidence 9999999999999999999999999975 899999999999876 99999999999999999998754
Q ss_pred ---CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCC---CC
Q 004378 166 ---TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK---EN 239 (758)
Q Consensus 166 ---~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~---~~ 239 (758)
.++.+++++.++++|.|++++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|.+......+. ..
T Consensus 156 ~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~ 235 (345)
T cd01368 156 KKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDK 235 (345)
T ss_pred cCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCC
Confidence 369999999999999999999999999999999999999999999999999999999999998765432111 23
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC-----CCCcccCCCCcccccccccCCCC
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-----RNGHINYRDSKLTRMLQPCLGGN 314 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----~~~hIPYRdSKLTrLLqdsLGGN 314 (758)
.....++|+|||||||||..++++.|.+++|+.+||+||++|++||.+|++. +..||||||||||+||||+||||
T Consensus 236 ~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~ 315 (345)
T cd01368 236 DQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGE 315 (345)
T ss_pred CceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCC
Confidence 4567899999999999999999999999999999999999999999999863 45799999999999999999999
Q ss_pred cceeEEeecCCCcccHHHHHHHHHHHHHhh
Q 004378 315 ARTAIICTLSPARSHVEQTRNTLLFACCAK 344 (758)
Q Consensus 315 skT~mIatISPs~~~~eETlsTLrFA~rAk 344 (758)
++|+||+||||+..+++||++||+||.+|+
T Consensus 316 s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 316 GKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=2.5e-76 Score=645.23 Aligned_cols=329 Identities=35% Similarity=0.549 Sum_probs=297.6
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCC--CCCCCCcccccCeecCCC-------CChhHHHhhhhHH
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--EGSTFPSAYTFDRVFWGD-------CSTTQVYEDGAKE 93 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--~~s~~~~~F~FD~VF~~~-------asQ~eVy~~~v~p 93 (758)
++|+|+|||||++..|...++...+.+.+ ..+.+..+.. ......+.|.||+||++. ++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~-~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p 79 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG-KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRE 79 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC-CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHH
Confidence 47999999999999998888777777666 6666655432 113446789999999999 9999999999999
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccc--cceEEEeehhhhhhhhhhcccCCCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEE--RAFVLKFSAMEIYNEAIRDLLSTDN 165 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~--~~~~V~vS~lEIYnE~V~DLL~~~~ 165 (758)
+|+++++|||+||||||||||||||||+ ||+|+++++||+.+..... ..|.|++||+|||||+|+|||++..
T Consensus 80 ~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~ 159 (356)
T cd01365 80 LLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKK 159 (356)
T ss_pred HHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCc
Confidence 9999999999999999999999999997 5899999999999987654 6899999999999999999998774
Q ss_pred ---CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCcee
Q 004378 166 ---TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242 (758)
Q Consensus 166 ---~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~ 242 (758)
..+.+++++.+|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+...... ......
T Consensus 160 ~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~-~~~~~~ 238 (356)
T cd01365 160 KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKE-TDLTTE 238 (356)
T ss_pred cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccC-CCCCce
Confidence 6899999999999999999999999999999999999999999999999999999999999987643321 134457
Q ss_pred EEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC-------CCCcccCCCCcccccccccCCCCc
Q 004378 243 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-------RNGHINYRDSKLTRMLQPCLGGNA 315 (758)
Q Consensus 243 ~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-------~~~hIPYRdSKLTrLLqdsLGGNs 315 (758)
..|+|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+.+ +..||||||||||+|||++||||+
T Consensus 239 ~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s 318 (356)
T cd01365 239 KVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNS 318 (356)
T ss_pred EEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCc
Confidence 7899999999999999999999999999999999999999999999864 357999999999999999999999
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceec
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVN 353 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN 353 (758)
+|+||+||||...+++||++||+||++|++|++.|++|
T Consensus 319 ~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred eEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 99999999999999999999999999999999999876
No 12
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=5.6e-75 Score=629.29 Aligned_cols=322 Identities=39% Similarity=0.603 Sum_probs=294.3
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEee-CCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcC
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G 101 (758)
++|+|+|||||+++.|...+....+.+. +..+|.+..+.......++.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 5899999999999999877666666653 455666665543334567899999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCcccccCC---------CCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCC-CCCccc
Q 004378 102 INSSIFAYGQTSSGKTYTMTG---------ITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-TPLRLL 171 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G---------ii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-~~l~i~ 171 (758)
||+||||||||||||||||+| |+|+++++||+.+....+..|.|.+||+|||||+|+|||++.. .++.++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999975 8999999999999988888999999999999999999999876 689999
Q ss_pred cCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEE
Q 004378 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (758)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVD 251 (758)
+++.++++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|+|++..... .+......|+|+|||
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~L~~VD 238 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGE--DGENHIRVGKLNLVD 238 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccC--CCCCcEEEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999998765432 123346689999999
Q ss_pred cCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHH
Q 004378 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (758)
Q Consensus 252 LAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~e 331 (758)
||||||..+++..|.+++|+..||+||.+|++||.+|+.++..|||||+||||+||+++||||++|+||+||+|...+++
T Consensus 239 LAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~ 318 (333)
T cd01371 239 LAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYD 318 (333)
T ss_pred CCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999987779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 004378 332 QTRNTLLFACCAKEV 346 (758)
Q Consensus 332 ETlsTLrFA~rAk~I 346 (758)
||++||+||+|||+|
T Consensus 319 eTl~TL~fa~r~r~I 333 (333)
T cd01371 319 ETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=6.4e-75 Score=632.89 Aligned_cols=327 Identities=38% Similarity=0.558 Sum_probs=297.4
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCC-cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcC
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G 101 (758)
.+|+|+|||||+...|...+....+.+.++ ++|.+.... ......+.|.||+||+++++|++||+.++.|+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~-~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGG-ADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCC-cccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999977777777887765 667665542 223446789999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCcccccC-----------------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCC
Q 004378 102 INSSIFAYGQTSSGKTYTMT-----------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTD 164 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~-----------------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~ 164 (758)
||+||||||||||||||||+ ||+||++.+||+.+... ...|.|++||+|||||+|+|||++.
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 99999999999999999995 47899999999999876 6689999999999999999999886
Q ss_pred ---CCCCccccC--CCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCC
Q 004378 165 ---NTPLRLLDD--PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (758)
Q Consensus 165 ---~~~l~i~ed--~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~ 239 (758)
..+++++++ ..+|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+..... .+.
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~--~~~ 237 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTI--SGE 237 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCC--CCC
Confidence 568999999 5899999999999999999999999999999999999999999999999999998764321 223
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeE
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAI 319 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~m 319 (758)
.....|+|+||||||+|+..+.++.+.+++|+..||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+|
T Consensus 238 ~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~ 316 (352)
T cd01364 238 ELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSI 316 (352)
T ss_pred ccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEE
Confidence 34567999999999999999999999999999999999999999999999865 69999999999999999999999999
Q ss_pred EeecCCCcccHHHHHHHHHHHHHhhcccccceecc
Q 004378 320 ICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (758)
Q Consensus 320 IatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~ 354 (758)
|+||||+..+++||++||+||++|++|+|+|.+|.
T Consensus 317 I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 317 IATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999985
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=5.9e-75 Score=626.61 Aligned_cols=311 Identities=35% Similarity=0.513 Sum_probs=284.3
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCC--CC--CCCCcccccCeecCCCCChhHHHhhhhHHHHHHh
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLR--EG--STFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~--~~--s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~v 98 (758)
.+|+|+|||||+.+.|...++...+.+.++.++.+..+.. .. ....+.|.||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 4799999999999999877777777777766777764321 11 1125789999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCCCCCcccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~e 172 (758)
++|||+||||||||||||||||+ ||+|+++++||+.+.... ..|.|++||+|||||+|+|||++ .+++.+++
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~ 158 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLE 158 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEE
Confidence 99999999999999999999998 899999999999998765 68999999999999999999987 67899999
Q ss_pred CCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEc
Q 004378 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (758)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDL 252 (758)
++.++++|.|++++.|.+++|++++|..|.++|+++.|.+|..|||||+||+|.|.+... ....|+|+||||
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~--------~~~~s~l~~vDL 230 (322)
T cd01367 159 DGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL--------NKLLGKLSFIDL 230 (322)
T ss_pred cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC--------CeeEEEEEEeec
Confidence 999999999999999999999999999999999999999999999999999999987542 356899999999
Q ss_pred CCCccccccc-chhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHH
Q 004378 253 AGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (758)
Q Consensus 253 AGSEr~~~t~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~e 331 (758)
||||+...+. ..+.+++|+.+||+||++|++||.+|++++ .||||||||||+||||+||||++|+|||||||+..+++
T Consensus 231 AGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~ 309 (322)
T cd01367 231 AGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCE 309 (322)
T ss_pred CCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHH
Confidence 9999998765 468899999999999999999999999875 69999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh
Q 004378 332 QTRNTLLFACCAK 344 (758)
Q Consensus 332 ETlsTLrFA~rAk 344 (758)
||++||+||+|+|
T Consensus 310 eTl~tL~fa~r~k 322 (322)
T cd01367 310 HTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=2.3e-74 Score=621.23 Aligned_cols=314 Identities=55% Similarity=0.794 Sum_probs=291.8
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN 103 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N 103 (758)
+|+|+||+||+++.|. .++.+.|.+.++.+|.+... ...+.|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~V~V~vRvRP~~~~e~-~~~~~~~~~~~~~~v~~~~~-----~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n 74 (321)
T cd01374 1 KIKVSVRVRPLNPRES-DNEQVAWSIDNDNTISLEES-----TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYN 74 (321)
T ss_pred CeEEEEEcCcCCcccc-cCCcceEEECCCCEEEEcCC-----CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCc
Confidence 5999999999999987 35677888888877776543 33579999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCCCCCccccCCCCc
Q 004378 104 SSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDPEKG 177 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~ed~~~g 177 (758)
+||||||||||||||||+ |++|+++++||..+....+..|.|++||+|||||+|+|||++...++++++++.++
T Consensus 75 ~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~ 154 (321)
T cd01374 75 GTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKG 154 (321)
T ss_pred eeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCC
Confidence 999999999999999998 79999999999999988888999999999999999999999998999999999999
Q ss_pred EEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcCCCcc
Q 004378 178 VVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSER 257 (758)
Q Consensus 178 v~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLAGSEr 257 (758)
++|.|++++.|.+++++..+|..|.++|+.+.|.+|..|||||+||+|+|.+..... ........|+|+||||||+|+
T Consensus 155 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~--~~~~~~~~s~l~~vDLAGsE~ 232 (321)
T cd01374 155 VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGD--SESGTVRVSTLNLIDLAGSER 232 (321)
T ss_pred EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCC--CCCCcEEEEEEEEEECCCCCc
Confidence 999999999999999999999999999999999999999999999999998865321 123456789999999999999
Q ss_pred cccccchhhhhhhhhhcchhHHHHHHHHHHhccCC-CCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHHHHHH
Q 004378 258 ASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNT 336 (758)
Q Consensus 258 ~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~-~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eETlsT 336 (758)
..+.+ .+.+++|+.+||+||.+|++||.+|+.++ ..|||||+||||+||+++||||++|+|||||||...+++||++|
T Consensus 233 ~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~T 311 (321)
T cd01374 233 ASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNT 311 (321)
T ss_pred cccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHH
Confidence 99988 89999999999999999999999999875 57999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcc
Q 004378 337 LLFACCAKEV 346 (758)
Q Consensus 337 LrFA~rAk~I 346 (758)
|+||+||++|
T Consensus 312 L~~a~r~~~i 321 (321)
T cd01374 312 LKFASRAKKV 321 (321)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=6.9e-74 Score=618.31 Aligned_cols=314 Identities=39% Similarity=0.557 Sum_probs=292.0
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCC
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI 102 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~ 102 (758)
++|+|+|||||+++.|...+....+.+.++.+|.+... ...+.|.||+||+++++|++||+.+++|+|+.+++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~ 76 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-----DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGY 76 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-----CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 58999999999999997777778888888878877653 2346899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCCCCCcccc
Q 004378 103 NSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~e 172 (758)
|+||||||||||||||||+ ||+|+++.+||+.+.... ...|.|++||+|||||+|+|||++....+.+++
T Consensus 77 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 156 (325)
T cd01369 77 NGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHE 156 (325)
T ss_pred cceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEE
Confidence 9999999999999999995 588999999999998654 457999999999999999999999888999999
Q ss_pred CCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEc
Q 004378 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (758)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDL 252 (758)
++.++++|.|++++.|.|++++..+|..|.++|+++.|.+|..|||||+||+|+|.+... .......|+|+||||
T Consensus 157 ~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~-----~~~~~~~s~l~~VDL 231 (325)
T cd01369 157 DKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENV-----ETGSKKRGKLFLVDL 231 (325)
T ss_pred cCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEec-----CCCCEEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999987542 233467899999999
Q ss_pred CCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHH
Q 004378 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (758)
Q Consensus 253 AGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eE 332 (758)
||+|+..++++.|.+++|+..||+||++|++||.+|++++..||||||||||+||+++|||||+|+||+||||+..+++|
T Consensus 232 AGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~e 311 (325)
T cd01369 232 AGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESE 311 (325)
T ss_pred CCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHH
Confidence 99999999999999999999999999999999999999876899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 004378 333 TRNTLLFACCAKEV 346 (758)
Q Consensus 333 TlsTLrFA~rAk~I 346 (758)
|++||+||+|||+|
T Consensus 312 Tl~TL~~a~r~~~i 325 (325)
T cd01369 312 TLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHHhhcC
Confidence 99999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.6e-73 Score=612.94 Aligned_cols=308 Identities=33% Similarity=0.531 Sum_probs=280.4
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCC-----cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHh
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECIND-----TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~-----~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~v 98 (758)
+|+|+|||||+.+.|. +....+...+. ..+.+..+. ....++.|.||+||+++++|++||+.++.|+|+.+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~--~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 76 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPR--NRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHL 76 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCC--CCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 5899999999998883 34445555444 355554432 23346789999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCCCCCcccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLD 172 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~e 172 (758)
++|||+||||||||||||||||+ ||+|+++++||+.++... ..|.|++||+|||||.|+|||++....+.+++
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~ 155 (319)
T cd01376 77 LSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIRE 155 (319)
T ss_pred hCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEE
Confidence 99999999999999999999996 699999999999887654 67999999999999999999998888999999
Q ss_pred CCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEc
Q 004378 173 DPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (758)
Q Consensus 173 d~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDL 252 (758)
++.++++|.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|.|.+... .....|+|+||||
T Consensus 156 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~~s~l~~VDL 228 (319)
T cd01376 156 DKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPAS-------NIQLEGKLNLIDL 228 (319)
T ss_pred cCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECC-------CceEEEEEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999987632 2267899999999
Q ss_pred CCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHH
Q 004378 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (758)
Q Consensus 253 AGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eE 332 (758)
||||+..+++..|.+++|+.+||+||++|++||.+|+.+. .|||||+||||+||+|+|||||+|+|||||||...+++|
T Consensus 229 AGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~e 307 (319)
T cd01376 229 AGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQD 307 (319)
T ss_pred CCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHH
Confidence 9999999999999999999999999999999999999864 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 004378 333 TRNTLLFACCAK 344 (758)
Q Consensus 333 TlsTLrFA~rAk 344 (758)
|++||+||+|||
T Consensus 308 Tl~TL~fa~r~~ 319 (319)
T cd01376 308 TLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHHHhhC
Confidence 999999999996
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.5e-73 Score=617.52 Aligned_cols=316 Identities=37% Similarity=0.568 Sum_probs=286.9
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCC-cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCC
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGI 102 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~ 102 (758)
+|+|+||+||+.+.|...+....+.+... ..+.+.. ++.|.||+||+++++|++||+.+++|+|+++++||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~--------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 73 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT--------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGY 73 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC--------CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 69999999999999976666666665543 3444422 46899999999999999999999999999999999
Q ss_pred CeeEEeeccCCCCcccccCC------------CCcchHHHHHHHHHhccc-cceEEEeehhhhhhhhhhcccCCC---CC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG------------ITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTD---NT 166 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G------------ii~rav~dLF~~i~~~~~-~~~~V~vS~lEIYnE~V~DLL~~~---~~ 166 (758)
|+||||||||||||||||+| |+|+++++||..+....+ ..|.|.+||+|||||+|+|||.+. ..
T Consensus 74 n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~ 153 (341)
T cd01372 74 NATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKS 153 (341)
T ss_pred ccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCC
Confidence 99999999999999999964 889999999999997665 789999999999999999999876 47
Q ss_pred CCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeeccccc-----CCCCce
Q 004378 167 PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL-----GKENST 241 (758)
Q Consensus 167 ~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~-----~~~~~~ 241 (758)
++.+++++.++++|.|++++.|.++++++.+|..|.++|..+.|.+|..|||||+||+|.|.+...... ......
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 899999999999999999999999999999999999999999999999999999999999988754211 113345
Q ss_pred eEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCC--CcccCCCCcccccccccCCCCcceeE
Q 004378 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN--GHINYRDSKLTRMLQPCLGGNARTAI 319 (758)
Q Consensus 242 ~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~--~hIPYRdSKLTrLLqdsLGGNskT~m 319 (758)
...|+|+||||||+|+..+++..|.+++|+..||+||++|++||.+|+.++. .|||||+||||+||+++||||++|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 7789999999999999999999999999999999999999999999998753 79999999999999999999999999
Q ss_pred EeecCCCcccHHHHHHHHHHHHHhhccc
Q 004378 320 ICTLSPARSHVEQTRNTLLFACCAKEVT 347 (758)
Q Consensus 320 IatISPs~~~~eETlsTLrFA~rAk~Ik 347 (758)
|+||||...+++||++||+||+|||+|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999986
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.6e-72 Score=608.82 Aligned_cols=312 Identities=35% Similarity=0.501 Sum_probs=278.0
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEee-CCcEEEeecCCC------CCCCCCcccccCeecCCCCChhHHHhhhhHHHHH
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLR------EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIAL 96 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~------~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~ 96 (758)
+|+|+||+||+...+.. .+... ++.++.+..+.. ........|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS-----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCCc-----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 48999999999874421 22333 333444332211 11223467999999999 9999999999999999
Q ss_pred HhhcCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCC--
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-- 165 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-- 165 (758)
++++|+|+||||||||||||||||+ ||+|+++.+||+.++...+..|.|++||+|||||+|+|||++..
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccc
Confidence 9999999999999999999999996 48999999999999988888999999999999999999998874
Q ss_pred ----CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCce
Q 004378 166 ----TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (758)
Q Consensus 166 ----~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~ 241 (758)
+.+.+++++.++++|.|++++.|.++++++.+|..|..+|.+++|.+|..|||||+||+|+|.+.... .....
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~---~~~~~ 231 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSRE---AGSEV 231 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecC---CCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999986443 23345
Q ss_pred eEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEe
Q 004378 242 TLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIIC 321 (758)
Q Consensus 242 ~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIa 321 (758)
...++|+|||||||||..+++..+.+++|+.+||+||++|++||.+|++++..||||||||||+||+|+|||||+|+|||
T Consensus 232 ~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~ 311 (334)
T cd01375 232 VRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLA 311 (334)
T ss_pred eEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEE
Confidence 67899999999999999999999999999999999999999999999998767999999999999999999999999999
Q ss_pred ecCCCcccHHHHHHHHHHHHHhh
Q 004378 322 TLSPARSHVEQTRNTLLFACCAK 344 (758)
Q Consensus 322 tISPs~~~~eETlsTLrFA~rAk 344 (758)
||||+..+++||++||+||+|++
T Consensus 312 ~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 312 TIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred EeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 20
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=8.8e-71 Score=594.84 Aligned_cols=315 Identities=36% Similarity=0.538 Sum_probs=287.3
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCC--cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECIND--TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~--~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
.++|+|+|||||+.+.|. ......+.+.+. .+|.+... ....+.|.||+||+++++|++||+. +.|+|++++
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~----~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~ 74 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG----TGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSAL 74 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC----CCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHh
Confidence 368999999999998886 344556666665 66666443 2345789999999999999999998 699999999
Q ss_pred cCCCeeEEeeccCCCCcccccCC------CCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCC---CCCC
Q 004378 100 SGINSSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD---NTPL 168 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~G------ii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~---~~~l 168 (758)
+|+|+||||||+|||||||||+| |+|+++++||..+.... ...|.|.+||+|||||+|+|||.+. ..++
T Consensus 75 ~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l 154 (329)
T cd01366 75 DGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKL 154 (329)
T ss_pred CCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCce
Confidence 99999999999999999999975 79999999999998765 4789999999999999999999987 6789
Q ss_pred ccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEE
Q 004378 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (758)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~ 248 (758)
.+++++.++++|.|++++.|.+++++..+|..|.++|.++.|.+|..|||||+||+|+|.+.... ......|+|+
T Consensus 155 ~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~-----~~~~~~s~l~ 229 (329)
T cd01366 155 EIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ-----TGEQTRGKLN 229 (329)
T ss_pred EEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC-----CCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 3456789999
Q ss_pred EEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcc
Q 004378 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (758)
Q Consensus 249 fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~ 328 (758)
||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+++|||+++|+|||||||...
T Consensus 230 ~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~ 308 (329)
T cd01366 230 LVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLES 308 (329)
T ss_pred EEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchh
Confidence 9999999999999999999999999999999999999999986 569999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccc
Q 004378 329 HVEQTRNTLLFACCAKEVTT 348 (758)
Q Consensus 329 ~~eETlsTLrFA~rAk~Ikn 348 (758)
+++||++||+||++|++|++
T Consensus 309 ~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 309 NLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred hHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999986
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=3.3e-70 Score=591.16 Aligned_cols=325 Identities=41% Similarity=0.617 Sum_probs=299.1
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCCc--EEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcC
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECINDT--TILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~--ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G 101 (758)
+|+|+|||||+...|...+....|.+.+.. +|.+... ......+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G 78 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSP--KNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEG 78 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCC--CCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcC
Confidence 599999999999999877778888877653 5555443 233456899999999999999999999999999999999
Q ss_pred CCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCCCCCccccCC
Q 004378 102 INSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDDP 174 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~ed~ 174 (758)
+|+||||||+|||||||||+ |++|+++++||+.+.... ...|.|++||+|||+|+|+|||++.+.++.+++++
T Consensus 79 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~ 158 (335)
T smart00129 79 YNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDK 158 (335)
T ss_pred CceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECC
Confidence 99999999999999999998 799999999999998655 56899999999999999999999999999999999
Q ss_pred CCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcCC
Q 004378 175 EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAG 254 (758)
Q Consensus 175 ~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLAG 254 (758)
.+++++.|++++.|.+++++..+|..|.++|.+++|.+|..|||||+||+|+|.+.... ........++|+||||||
T Consensus 159 ~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~---~~~~~~~~s~l~~VDLaG 235 (335)
T smart00129 159 KGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKN---SSSGSGKASKLNLVDLAG 235 (335)
T ss_pred CCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecC---CCCCCEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999865322 334457889999999999
Q ss_pred CcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC-CCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHHH
Q 004378 255 SERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQT 333 (758)
Q Consensus 255 SEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eET 333 (758)
+|+..+.+..|.+++|+..||+||.+|++||.+|+++ +..|||||+|+||+||+++|||+++|+||+||||...+++||
T Consensus 236 se~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eT 315 (335)
T smart00129 236 SERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEET 315 (335)
T ss_pred CCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHH
Confidence 9999999999999999999999999999999999985 566999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccceec
Q 004378 334 RNTLLFACCAKEVTTKAQVN 353 (758)
Q Consensus 334 lsTLrFA~rAk~Ikn~~~vN 353 (758)
++||+||+++++|+++|++|
T Consensus 316 l~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 316 LSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHhhcccCCCcC
Confidence 99999999999999999875
No 22
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.4e-70 Score=633.63 Aligned_cols=325 Identities=35% Similarity=0.507 Sum_probs=289.6
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcC
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G 101 (758)
.++|||||||||+.+.|........+.......+.+..+.......+..|.||+||+|.++|++||.+ +.|+|+++|+|
T Consensus 313 kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e-~~~lv~S~lDG 391 (670)
T KOG0239|consen 313 KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEE-VSPLVQSALDG 391 (670)
T ss_pred hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHH-HHHHHHHHhcC
Confidence 68999999999999988764333332222223455555544444444579999999999999999998 99999999999
Q ss_pred CCeeEEeeccCCCCcccccCC-------CCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCC--CCCccc
Q 004378 102 INSSIFAYGQTSSGKTYTMTG-------ITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLL 171 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G-------ii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~--~~l~i~ 171 (758)
||+||||||||||||||||.| |+||++.+||..+.... .+.|.+.++|+|||||.|+|||++.. ..+.|+
T Consensus 392 YnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~ 471 (670)
T KOG0239|consen 392 YNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIV 471 (670)
T ss_pred cceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEE
Confidence 999999999999999999976 89999999999998654 58999999999999999999998874 678999
Q ss_pred cCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEE
Q 004378 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (758)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVD 251 (758)
++++++++|.+++.+.|.+.+++..++..|..+|++++|.+|++|||||+||+|+|... +........+.|+|||
T Consensus 472 ~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~-----~~~t~~~~~g~l~LVD 546 (670)
T KOG0239|consen 472 DDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGI-----NELTGIRVTGVLNLVD 546 (670)
T ss_pred EcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecc-----ccCcccccccceeEee
Confidence 99999999999999999999999999999999999999999999999999999999765 2334456789999999
Q ss_pred cCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHH
Q 004378 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (758)
Q Consensus 252 LAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~e 331 (758)
||||||++++++.|+|++|+.+||+||++||.||.||+. +..||||||||||+|||++|||++||+|+++|||...++.
T Consensus 547 LAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~ 625 (670)
T KOG0239|consen 547 LAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALF 625 (670)
T ss_pred cccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHh
Confidence 999999999999999999999999999999999999998 4569999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccceec
Q 004378 332 QTRNTLLFACCAKEVTTKAQVN 353 (758)
Q Consensus 332 ETlsTLrFA~rAk~Ikn~~~vN 353 (758)
||+++|+||.|++.+...+-..
T Consensus 626 Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 626 ETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred hhhhccchHHHhhceecccccc
Confidence 9999999999999988766553
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=8.2e-69 Score=578.05 Aligned_cols=317 Identities=41% Similarity=0.611 Sum_probs=289.6
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN 103 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N 103 (758)
+|+|+|||||+...| ..+....|.+.++.+|.+..+........+.|.||+||+++++|++||+.++.|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 599999999998877 3345666777666888886653323445689999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCcccccCC------CCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCC--CCCCccccC
Q 004378 104 SSIFAYGQTSSGKTYTMTG------ITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTD--NTPLRLLDD 173 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G------ii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~--~~~l~i~ed 173 (758)
+||||||+|||||||||+| ++|+++++||..+.... ...|.|.+||+|||+|+|+|||.+. ..++.++++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~ 159 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLRED 159 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEc
Confidence 9999999999999999987 99999999999999776 5789999999999999999999998 889999999
Q ss_pred CCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcC
Q 004378 174 PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 253 (758)
Q Consensus 174 ~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLA 253 (758)
+.+++++.|++++.|.++++++.+|..|.++|..+.|.+|..|||||+||+|+|.+..... .......|+|+|||||
T Consensus 160 ~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~---~~~~~~~s~l~~VDLa 236 (328)
T cd00106 160 PKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTN---DGRSIKSSKLNLVDLA 236 (328)
T ss_pred CCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCC---CCccEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999998875421 1114678999999999
Q ss_pred CCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCC-CCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHH
Q 004378 254 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (758)
Q Consensus 254 GSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~-~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eE 332 (758)
|+|+..+.+..+.+++|+..||+||.+|++||.+|+.+. ..|||||+||||+||||+|||+++|+|||||+|...+++|
T Consensus 237 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~e 316 (328)
T cd00106 237 GSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDE 316 (328)
T ss_pred CCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHH
Confidence 999999988999999999999999999999999999876 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 004378 333 TRNTLLFACCAK 344 (758)
Q Consensus 333 TlsTLrFA~rAk 344 (758)
|++||+||+|||
T Consensus 317 Tl~tL~~a~r~~ 328 (328)
T cd00106 317 TLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=4e-69 Score=581.99 Aligned_cols=316 Identities=40% Similarity=0.602 Sum_probs=276.5
Q ss_pred EcCCCCchhhhcCCCCceEeeCCcE-EEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEe
Q 004378 30 RLRPLSEKEITADEATDWECINDTT-ILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFA 108 (758)
Q Consensus 30 RVRPl~~~E~~~~~~~~~~~~~~~t-i~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfA 108 (758)
||||+++.|...+....+.+..... ................|.||+||+++++|++||+.++.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 9999999999888877776653211 111111122233457899999999999999999999999999999999999999
Q ss_pred eccCCCCcccccCC--------CCcchHHHHHHHHHhccc---cceEEEeehhhhhhhhhhcccCCC----CCCCccccC
Q 004378 109 YGQTSSGKTYTMTG--------ITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNEAIRDLLSTD----NTPLRLLDD 173 (758)
Q Consensus 109 YGqTGSGKTyTM~G--------ii~rav~dLF~~i~~~~~---~~~~V~vS~lEIYnE~V~DLL~~~----~~~l~i~ed 173 (758)
||+|||||||||+| |+|+++++||..+..... ..|.|+|||+|||||+|+|||++. ..++.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 99999999999988 789999999999997665 489999999999999999999987 357999999
Q ss_pred CCCc-EEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEc
Q 004378 174 PEKG-VVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (758)
Q Consensus 174 ~~~g-v~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDL 252 (758)
+..| ++|.|++++.|.+++++..+|..|.++|+++.|.+|..|||||+||+|.|.+......... .....|+|+||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~-~~~~~s~l~~vDL 239 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDE-ESVKHSRLTFVDL 239 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEE-EEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc-cceeecceeeeec
Confidence 9977 9999999999999999999999999999999999999999999999999998754321111 1357899999999
Q ss_pred CCCcccccccc-hhhhhhhhhhcchhHHHHHHHHHHhccC-CCCcccCCCCcccccccccCCCCcceeEEeecCCCcccH
Q 004378 253 AGSERASQALS-TGARLKEGCHINRSLLTLSTVIRKLSKG-RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 330 (758)
Q Consensus 253 AGSEr~~~t~s-~g~rlkEg~~INkSL~aLg~VI~aLs~~-~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~ 330 (758)
||+|+..+... .+.+++|+..||+||.+|++||.+|+.+ ...|||||+||||+||+|+|||||+|+||+||||...++
T Consensus 240 aGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~ 319 (335)
T PF00225_consen 240 AGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDY 319 (335)
T ss_dssp EESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGH
T ss_pred ccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccH
Confidence 99999998886 4788999999999999999999999987 567999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 004378 331 EQTRNTLLFACCAKEV 346 (758)
Q Consensus 331 eETlsTLrFA~rAk~I 346 (758)
+||++||+||.+||+|
T Consensus 320 ~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 320 EETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999999987
No 25
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-68 Score=586.39 Aligned_cols=326 Identities=33% Similarity=0.471 Sum_probs=290.0
Q ss_pred cCCCCCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCC----CCCCCcccccCeecCCCCChhHHHhhhh
Q 004378 16 QAPSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLRE----GSTFPSAYTFDRVFWGDCSTTQVYEDGA 91 (758)
Q Consensus 16 ~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~----~s~~~~~F~FD~VF~~~asQ~eVy~~~v 91 (758)
++....+++|.|+||-||++.+|....+..++.+..+..++++.+... ..-..+.|.||++|+..++++.||..++
T Consensus 201 ~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa 280 (676)
T KOG0246|consen 201 MGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTA 280 (676)
T ss_pred cCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhh
Confidence 445677889999999999999999888888888877777777653210 1122468999999999999999999999
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC------------CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhh
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAI 157 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------------Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V 157 (758)
+|||..+|+|--+|+||||||||||||||- ||.-.+.+|+|..+..-. ...+.|.+||+|||+.+|
T Consensus 281 ~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKv 360 (676)
T KOG0246|consen 281 KPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKV 360 (676)
T ss_pred hHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcch
Confidence 999999999999999999999999999993 677788999999998644 457899999999999999
Q ss_pred hcccCCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCC
Q 004378 158 RDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 237 (758)
Q Consensus 158 ~DLL~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~ 237 (758)
||||+. ++.|++++|.+..+.|.||+|..|.+.+++++||..|++.|+.+.|..|+.|||||+||+|.+...
T Consensus 361 fDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~------- 432 (676)
T KOG0246|consen 361 YDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH------- 432 (676)
T ss_pred hhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecC-------
Confidence 999975 778999999999999999999999999999999999999999999999999999999999999653
Q ss_pred CCceeEEEEEEEEEcCCCcccccccc-hhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCC-Cc
Q 004378 238 ENSTTLSASVNFVDLAGSERASQALS-TGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGG-NA 315 (758)
Q Consensus 238 ~~~~~~~skL~fVDLAGSEr~~~t~s-~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGG-Ns 315 (758)
....+.|++.||||||+||...+.. ..+...||+.|||||+||..||+||.+.+ .|+|||.||||.+|+|||-| |+
T Consensus 433 -~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenS 510 (676)
T KOG0246|consen 433 -GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENS 510 (676)
T ss_pred -CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCC
Confidence 2247889999999999999876654 45567799999999999999999999865 59999999999999999988 99
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhcccccce
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~ 351 (758)
+|+||+||||....++.||||||||.|.|+......
T Consensus 511 rTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 511 RTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred ceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999999999999999765443
No 26
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=8.3e-64 Score=562.53 Aligned_cols=328 Identities=31% Similarity=0.500 Sum_probs=290.5
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCC-------CCCCCCCcccccCeecCCCCChhHHHhhhhH
Q 004378 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL-------REGSTFPSAYTFDRVFWGDCSTTQVYEDGAK 92 (758)
Q Consensus 20 ~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~-------~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~ 92 (758)
...+.|.|+||+||+.. ..++.+.+.+++..+|+...+. ..++...+.|.|-+||+|+++|.+||+.++.
T Consensus 28 ~~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~ 104 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVA 104 (809)
T ss_pred hhhcchheeEeecCCCC---CccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhH
Confidence 44578999999999985 3356677888999998876432 1344556789999999999999999999999
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhc----------------------------
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH---------------------------- 138 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~---------------------------- 138 (758)
|+|.+++.|.|..+|+||.|||||||||+ ||+||+++-||..|...
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lk 184 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLK 184 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999996 59999999999866420
Q ss_pred -------------------------------------cccceEEEeehhhhhhhhhhcccCCCCC-----C-CccccCCC
Q 004378 139 -------------------------------------EERAFVLKFSAMEIYNEAIRDLLSTDNT-----P-LRLLDDPE 175 (758)
Q Consensus 139 -------------------------------------~~~~~~V~vS~lEIYnE~V~DLL~~~~~-----~-l~i~ed~~ 175 (758)
.+..|.|+|||+|||||.|||||.+... . ..+++|.+
T Consensus 185 r~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~ 264 (809)
T KOG0247|consen 185 REAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTN 264 (809)
T ss_pred hhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccC
Confidence 1224889999999999999999976532 2 56789999
Q ss_pred CcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcCCC
Q 004378 176 KGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGS 255 (758)
Q Consensus 176 ~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLAGS 255 (758)
+..||.|++++.|.+.+|+++||+.|.++|+++.|.+|..|||||+||+|.|.+.... .+......|.|.|||||||
T Consensus 265 ~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~---~~s~~i~vSqlsLvDLAGS 341 (809)
T KOG0247|consen 265 GNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRS---QDSNQITVSQLSLVDLAGS 341 (809)
T ss_pred CCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccc---cccCceeEEeeeeeecccc
Confidence 9999999999999999999999999999999999999999999999999999886553 2445678899999999999
Q ss_pred cccccccchhhhhhhhhhcchhHHHHHHHHHHhccC----CCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHH
Q 004378 256 ERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG----RNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (758)
Q Consensus 256 Er~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~----~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~e 331 (758)
||..++...|.||+||++||.||++||+||.+|.++ ...+|||||||||++++.+|.|..+.+||+||+|...+|+
T Consensus 342 ERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~Yd 421 (809)
T KOG0247|consen 342 ERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYD 421 (809)
T ss_pred hhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHH
Confidence 999999999999999999999999999999999753 2358999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccceec
Q 004378 332 QTRNTLLFACCAKEVTTKAQVN 353 (758)
Q Consensus 332 ETlsTLrFA~rAk~Ikn~~~vN 353 (758)
|+++.|+||..|+.|.....++
T Consensus 422 Enl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 422 ENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHHHhcccccccCccc
Confidence 9999999999999998876664
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-66 Score=598.82 Aligned_cols=336 Identities=35% Similarity=0.525 Sum_probs=301.9
Q ss_pred cCCCCchhhhcCCCCceEee-CCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEee
Q 004378 31 LRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAY 109 (758)
Q Consensus 31 VRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAY 109 (758)
|||+...|...+......+. +..+|.+.. ...|+||+||.....|.++|+.++.|+++.+++|||+|++||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig~--------~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlay 72 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIGK--------DASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAY 72 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeecC--------CcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeee
Confidence 69999999887776665533 334444422 358999999999999999999999999999999999999999
Q ss_pred ccCCCCccccc----------CCCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCC--CCCccccCCCCc
Q 004378 110 GQTSSGKTYTM----------TGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLLDDPEKG 177 (758)
Q Consensus 110 GqTGSGKTyTM----------~Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~--~~l~i~ed~~~g 177 (758)
||||||||||| .|++|+++..+|..+.......|.|.|||+|||+|.|+|||.+.. .++.+++ +.++
T Consensus 73 gQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~ 151 (913)
T KOG0244|consen 73 GQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGE 151 (913)
T ss_pred cccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCc
Confidence 99999999999 289999999999999988778899999999999999999998554 3577777 7788
Q ss_pred EEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcCCCcc
Q 004378 178 VVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSER 257 (758)
Q Consensus 178 v~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLAGSEr 257 (758)
+.+.|+++..|.+..++...|..|...|++++|+||..|||||+||++.+++.... ......++||+|||||||||
T Consensus 152 it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~----~~~s~~~sKlhlVDLAGSER 227 (913)
T KOG0244|consen 152 ITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKL----SKRSSFCSKLHLVDLAGSER 227 (913)
T ss_pred eEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHh----hccchhhhhhheeecccccc
Confidence 99999999999999999999999999999999999999999999999999875331 23336679999999999999
Q ss_pred cccccchhhhhhhhhhcchhHHHHHHHHHHhccCC-CCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHHHHHH
Q 004378 258 ASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNT 336 (758)
Q Consensus 258 ~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~-~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eETlsT 336 (758)
.+++++.|+|++||.+||.+|++||+||.||...+ .+|||||||||||||||+||||++|+||+||||+..+.+||++|
T Consensus 228 ~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnT 307 (913)
T KOG0244|consen 228 VKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNT 307 (913)
T ss_pred ccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHH
Confidence 99999999999999999999999999999997643 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCC
Q 004378 337 LLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPA 380 (758)
Q Consensus 337 LrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~ 380 (758)
|+||.||++|+|+|.+|.. ...+.+..|+.+|..|+.+|-..+
T Consensus 308 l~ya~Rak~iknk~vvN~d-~~~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 308 LRYADRAKQIKNKPVVNQD-PKSFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHhhHHHHhccccccccc-HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999994 345678999999999999987665
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-60 Score=544.07 Aligned_cols=317 Identities=39% Similarity=0.592 Sum_probs=280.1
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhc
Q 004378 21 REEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS 100 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~ 100 (758)
....++++++..|-...+ ..+...+...+..... ....|.||+||++.++|++||+..++|+++.++.
T Consensus 20 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~------~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~ 87 (568)
T COG5059 20 SVSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS------KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLL 87 (568)
T ss_pred eecCceEEEeecCCCcch------heeecccccccccccc------cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHh
Confidence 346788888888843221 1222222222222111 1457999999999999999999999999999999
Q ss_pred CCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCCCCCccccC
Q 004378 101 GINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPLRLLDD 173 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~i~ed 173 (758)
|||+||||||||||||||||. |++|+++.+||+.+.... +..|.|.+||+|||||+++|||.+....+.++++
T Consensus 88 g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~ 167 (568)
T COG5059 88 GYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIRED 167 (568)
T ss_pred cccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccccccccc
Confidence 999999999999999999995 599999999999998654 5679999999999999999999988777889999
Q ss_pred CCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcC
Q 004378 174 PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLA 253 (758)
Q Consensus 174 ~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLA 253 (758)
...+++|.|+++..+.++++++.+|..|..+|+++.|.+|..|||||+||++++.+..... .....++|+|||||
T Consensus 168 ~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~-----~~~~~~~l~lvDLa 242 (568)
T COG5059 168 SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS-----GTSETSKLSLVDLA 242 (568)
T ss_pred CCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCc-----cceecceEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999998875432 22333789999999
Q ss_pred CCcccccccchhhhhhhhhhcchhHHHHHHHHHHhcc-CCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHH
Q 004378 254 GSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK-GRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (758)
Q Consensus 254 GSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~-~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eE 332 (758)
|||++..++..+.|++|+..||+||++||+||++|.. .+..|||||+||||||||++|||+++|+|||||+|...++++
T Consensus 243 gSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~e 322 (568)
T COG5059 243 GSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEE 322 (568)
T ss_pred cccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHH
Confidence 9999999999999999999999999999999999986 346799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccceecc
Q 004378 333 TRNTLLFACCAKEVTTKAQVNV 354 (758)
Q Consensus 333 TlsTLrFA~rAk~Ikn~~~vN~ 354 (758)
|.+||+||.+|+.|++++..|.
T Consensus 323 t~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 323 TINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHHHHHhhcCCcccccC
Confidence 9999999999999999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=9.9e-48 Score=384.43 Aligned_cols=173 Identities=44% Similarity=0.650 Sum_probs=159.7
Q ss_pred HHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhc
Q 004378 86 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRD 159 (758)
Q Consensus 86 Vy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~D 159 (758)
||+.++ |+|+.+++|||+||||||||||||||||+ |++|+++++
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~----------------------------- 57 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD----------------------------- 57 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH-----------------------------
Confidence 999999 99999999999999999999999999998 677777766
Q ss_pred ccCCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCC
Q 004378 160 LLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (758)
Q Consensus 160 LL~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~ 239 (758)
+++++..|.++|+.+.|.+|..|||||+||+|+|.+..... ...
T Consensus 58 ----------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~--~~~ 101 (186)
T cd01363 58 ----------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALA--SAT 101 (186)
T ss_pred ----------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCC--CCc
Confidence 88999999999999999999999999999999998765432 123
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeE
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAI 319 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~m 319 (758)
.....++|+||||||||+..+++..+.+++|+..||+||.+|++||.+|+++. .||||||||||+||||+|||||+|+|
T Consensus 102 ~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~-~~vpyr~SkLT~lL~~~L~g~~~t~~ 180 (186)
T cd01363 102 EQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERD-SHVPYRESKLTRLLQDSLGGNSRTLM 180 (186)
T ss_pred cceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCC-CCCCCcccHHHHHHHHhcCCCCeEEE
Confidence 45678999999999999999999999999999999999999999999999864 59999999999999999999999999
Q ss_pred EeecCC
Q 004378 320 ICTLSP 325 (758)
Q Consensus 320 IatISP 325 (758)
|+||||
T Consensus 181 i~~vsP 186 (186)
T cd01363 181 VACISP 186 (186)
T ss_pred EEEeCc
Confidence 999998
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.02 E-value=9.9e-08 Score=111.44 Aligned_cols=254 Identities=22% Similarity=0.193 Sum_probs=150.4
Q ss_pred CCCCCCCCeEEEEEcCCCCchhhhcCCCCceEee----C-CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhh
Q 004378 17 APSAREEKILVLVRLRPLSEKEITADEATDWECI----N-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGA 91 (758)
Q Consensus 17 ~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~----~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v 91 (758)
..-++..+++|+|+|+|........-. ..... + ..++.. +...........|.||.+|.....+..++.. .
T Consensus 299 ~sLgG~~~~~~i~~Isp~~~~~~et~~--tL~~a~rak~I~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~ 374 (568)
T COG5059 299 DSLGGNCNTRVICTISPSSNSFEETIN--TLKFASRAKSIKNKIQV-NSSSDSSREIEEIKFDLSEDRSEIEILVFRE-Q 374 (568)
T ss_pred HhcCCCccEEEEEEEcCCCCchHHHHH--HHHHHHHHhhcCCcccc-cCcCcchHHHHHHHhhhhhhhhhhhhHHHHH-H
Confidence 334555599999999998743211000 00000 0 111111 1100111223579999999999888888876 6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC----CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCCC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDN 165 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~----Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~~ 165 (758)
..+++..++| +++||++++|+++||. ++....+..+|..+.... ...+...+-++++|-....+++....
T Consensus 375 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 450 (568)
T COG5059 375 SQLSQSSLSG----IFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEEL 450 (568)
T ss_pred Hhhhhhhhhh----HHHHHhhhhhhhhcccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677888888 9999999999999995 444455566676665433 23344455566666333333332111
Q ss_pred -CCCc-cccC-CCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCcee
Q 004378 166 -TPLR-LLDD-PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242 (758)
Q Consensus 166 -~~l~-i~ed-~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~ 242 (758)
++.. +... .-....+..++.. .....+..... .+...+..+.+..|..++|+|.+|+........- ..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-------~~ 521 (568)
T COG5059 451 SKKKTKIHKLNKLRHDLSSLLSSI-PEETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS-------TK 521 (568)
T ss_pred CChHHHHHHHHHHHHHHHHhhhhc-chhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh-------hH
Confidence 1100 0000 0000000011111 11111111111 4667788899999999999999998765332110 00
Q ss_pred EEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhc
Q 004378 243 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLS 289 (758)
Q Consensus 243 ~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs 289 (758)
... ++.|||||+||. -+.+-|.++++...+|++|.-++.+|.++.
T Consensus 522 ~~~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 522 ELS-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred HHH-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 011 799999999999 888999999999999999999999998764
No 31
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.026 Score=65.10 Aligned_cols=82 Identities=20% Similarity=0.313 Sum_probs=59.3
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcc-------------hHHHHHHHHH
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC-------------TVADIFDYIH 136 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~r-------------av~dLF~~i~ 136 (758)
.|..-.-|.|.-+|-+- +..||+.+-.|.-.-+ -.|.|||||||||.-++.. ....||..++
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 46666778888888654 4557777777766554 4599999999999654432 3567888776
Q ss_pred h-ccccceEEEeehhhhhhhh
Q 004378 137 R-HEERAFVLKFSAMEIYNEA 156 (758)
Q Consensus 137 ~-~~~~~~~V~vS~lEIYnE~ 156 (758)
. .++..+...|||+..|.-.
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPE 99 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPE 99 (663)
T ss_pred HhCcCcceEEEeeeccccCcc
Confidence 5 4677888899999999744
No 32
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.91 E-value=0.036 Score=57.56 Aligned_cols=76 Identities=32% Similarity=0.399 Sum_probs=44.0
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEee
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFS 148 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS 148 (758)
..|+||.-+.. ..++..|.. +..+...--..+|. +|-||++|+||||-|.+ +...+.+.....-.+.++
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A--------i~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA--------IANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH--------HHHHHHHHCTTS-EEEEE
T ss_pred CCCccccCCcC-CcHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH--------HHHHHHhccccccceeec
Confidence 36999987754 346667754 55565552223444 78899999999998654 344443322222356776
Q ss_pred hhhhhhh
Q 004378 149 AMEIYNE 155 (758)
Q Consensus 149 ~lEIYnE 155 (758)
.-+..++
T Consensus 72 ~~~f~~~ 78 (219)
T PF00308_consen 72 AEEFIRE 78 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 33
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.55 E-value=0.12 Score=61.34 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=37.2
Q ss_pred CcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 68 ~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
...|+||..+-.. .+..+|. .+..++...-.+||. ||-||.+|+||||.+..|
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~a-aa~avae~~~~~~Np-L~LyG~sGsGKTHLL~AI 334 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHA-AAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHAI 334 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHH-HHHHHHhCccccCCc-EEEECCCCCCHHHHHHHH
Confidence 4579998876544 3445553 456666654456776 899999999999998653
No 34
>PRK06893 DNA replication initiation factor; Validated
Probab=92.37 E-value=0.12 Score=53.80 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=34.0
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
..++||..+... +..- +..+...+-.++|..++-||++|+||||.+.++
T Consensus 11 ~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai 59 (229)
T PRK06893 11 DDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAV 59 (229)
T ss_pred CcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHHH
Confidence 468999998755 2221 222233334578888999999999999998654
No 35
>PRK06620 hypothetical protein; Validated
Probab=90.25 E-value=0.18 Score=52.28 Aligned_cols=49 Identities=33% Similarity=0.446 Sum_probs=33.8
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC---eeEEeeccCCCCcccccC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN---SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N---~tIfAYGqTGSGKTyTM~ 121 (758)
..|+||..+... ++...|.. ++.+.+. . |+| -.++-||++|+||||.+.
T Consensus 11 ~~~tfd~Fvvg~-~N~~a~~~-~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSS-SNDQAYNI-IKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecc-cHHHHHHH-HHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 468999877655 44667765 3334331 1 444 359999999999999875
No 36
>PRK12377 putative replication protein; Provisional
Probab=89.89 E-value=0.19 Score=53.53 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=37.6
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
..+||........|..++.. +..++..+..+. ..++-||++|+||||.+.+|
T Consensus 70 ~~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~AI 121 (248)
T PRK12377 70 KCSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAAI 121 (248)
T ss_pred cCCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHH
Confidence 34777665545566667754 777777776654 46888999999999998664
No 37
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.79 E-value=0.2 Score=54.75 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=29.4
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
...+++..+++--++.|+.-|+||||||+||.-
T Consensus 112 glP~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 112 GLPPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CCCHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 466788899999999999999999999999743
No 38
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=89.62 E-value=0.8 Score=51.66 Aligned_cols=79 Identities=25% Similarity=0.267 Sum_probs=44.6
Q ss_pred CCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEE
Q 004378 67 FPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLK 146 (758)
Q Consensus 67 ~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~ 146 (758)
....|+||...- ...+...|.. +..++..--..+| .++-||++|+||||.+..+ ...+.+.......+.
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ai--------~~~l~~~~~~~~v~y 171 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHAI--------GNEILENNPNAKVVY 171 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHHH--------HHHHHHhCCCCcEEE
Confidence 446799998443 2345556643 5555544211234 4788999999999997543 233322221233456
Q ss_pred eehhhhhhhh
Q 004378 147 FSAMEIYNEA 156 (758)
Q Consensus 147 vS~lEIYnE~ 156 (758)
+++-++.++-
T Consensus 172 i~~~~~~~~~ 181 (405)
T TIGR00362 172 VSSEKFTNDF 181 (405)
T ss_pred EEHHHHHHHH
Confidence 6666655543
No 39
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=89.15 E-value=0.66 Score=53.20 Aligned_cols=53 Identities=28% Similarity=0.370 Sum_probs=34.3
Q ss_pred CCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 67 FPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 67 ~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
....|+||..... ..+...|.. +..+.+.--..+| .+|-||++|+||||.+..
T Consensus 115 l~~~~tfd~fv~g-~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 115 LNPKYTFDNFVVG-KSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCCcccccccC-CCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 3467899885433 345556654 5555544222344 488899999999999855
No 40
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.68 E-value=0.67 Score=53.25 Aligned_cols=51 Identities=29% Similarity=0.461 Sum_probs=35.1
Q ss_pred CcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 68 ~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
...|+||..+-. ..+...|.. +..++.. -..||. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~-~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCcccccccC-CchHHHHHH-HHHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 457999987754 345556654 4445443 123675 99999999999999854
No 41
>PRK06526 transposase; Provisional
Probab=88.26 E-value=0.2 Score=53.47 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=29.3
Q ss_pred cCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCC
Q 004378 73 FDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 73 FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii 124 (758)
||.-+.+.-++..+..-.....+. .+.| |+.||++|+||||.+.++.
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHHHH
Confidence 333344455555555443444443 3444 7899999999999997653
No 42
>PRK09087 hypothetical protein; Validated
Probab=88.12 E-value=0.38 Score=50.33 Aligned_cols=47 Identities=17% Similarity=0.097 Sum_probs=32.2
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..|+||..+...+ +..+|.. +.....-.+..++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 4689998886543 3557763 333222235568999999999999885
No 43
>PRK08116 hypothetical protein; Validated
Probab=88.04 E-value=0.36 Score=51.84 Aligned_cols=52 Identities=21% Similarity=0.335 Sum_probs=36.6
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhc--CCCeeEEeeccCCCCcccccCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS--GINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~--G~N~tIfAYGqTGSGKTyTM~G 122 (758)
..++||... ....+...|.. +...++.+.. ..+..++-||.+|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 357788654 34555556654 7777777654 3455699999999999998765
No 44
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.95 E-value=0.49 Score=49.58 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=32.4
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
..|+||..+.. .+..++.. +..++. ......++-||++|+||||.+.++
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHHH
Confidence 46889876654 55666654 333322 222347899999999999998653
No 45
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.86 E-value=0.67 Score=53.42 Aligned_cols=76 Identities=24% Similarity=0.325 Sum_probs=43.6
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeeh
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSA 149 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~ 149 (758)
.|+||..+... +++..|. .+..++..--..|| .+|-||.+|+||||.|..+ -..+.......-.+.++.
T Consensus 111 ~~tFdnFv~g~-~n~~A~~-aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~Ai--------~~~l~~~~~~~~v~yv~~ 179 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFI-AVQTVSKNPGISYN-PLFIYGESGMGKTHLLKAA--------KNYIESNFSDLKVSYMSG 179 (450)
T ss_pred ccchhcccCCC-cHHHHHH-HHHHHHhCcCcccC-ceEEECCCCCcHHHHHHHH--------HHHHHHhCCCCeEEEEEH
Confidence 58999876544 4555664 35555432111244 4889999999999998542 222222111222356666
Q ss_pred hhhhhhh
Q 004378 150 MEIYNEA 156 (758)
Q Consensus 150 lEIYnE~ 156 (758)
-+++++-
T Consensus 180 ~~f~~~~ 186 (450)
T PRK14087 180 DEFARKA 186 (450)
T ss_pred HHHHHHH
Confidence 6655443
No 46
>PRK05642 DNA replication initiation factor; Validated
Probab=87.36 E-value=0.54 Score=49.28 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=30.3
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhc---CC-CeeEEeeccCCCCcccccCCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS---GI-NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~---G~-N~tIfAYGqTGSGKTyTM~Gi 123 (758)
..|+||.-+... +.. +...+....+ ++ ...++-||++|+||||-+.++
T Consensus 14 ~~~tfdnF~~~~--~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 14 DDATFANYYPGA--NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CcccccccCcCC--hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHH
Confidence 468999887432 232 3333433332 22 246889999999999987553
No 47
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.22 E-value=0.22 Score=55.11 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=27.8
Q ss_pred HHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCC
Q 004378 85 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 85 eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii 124 (758)
.+++. +...++.+-.+. -.|+-||++|+||||.+.+|.
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa 204 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIA 204 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHH
Confidence 34433 566777776554 569999999999999886643
No 48
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.13 E-value=0.37 Score=51.21 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=35.3
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
..+||...-....|..++.. +..+++.+..|. ..++-||.+|+||||.+.++
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ai 119 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAAI 119 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHHH
Confidence 45777654444456666654 555666655443 36889999999999998664
No 49
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.07 E-value=0.72 Score=47.01 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=32.8
Q ss_pred CcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 68 ~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
+..|+||.... . .+..+++. ++.++ ..+....|+-||++|+||||.+..
T Consensus 9 ~~~~~~~~~~~-~-~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 9 PDDPTFDNFYA-G-GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCchhhcCcCc-C-CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 34688887773 2 44555554 22322 246677899999999999998744
No 50
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.90 E-value=1.3 Score=50.40 Aligned_cols=84 Identities=26% Similarity=0.343 Sum_probs=48.9
Q ss_pred CcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEe
Q 004378 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKF 147 (758)
Q Consensus 68 ~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~v 147 (758)
...|+||..... .++...|.. +..+.+.--.-|| -||-||.+|+||||-|..+ -+.+.......-.+.+
T Consensus 81 ~~~ytFdnFv~g-~~N~~A~aa-~~~va~~~g~~~n-plfi~G~~GlGKTHLl~Ai--------gn~~~~~~~~a~v~y~ 149 (408)
T COG0593 81 NPKYTFDNFVVG-PSNRLAYAA-AKAVAENPGGAYN-PLFIYGGVGLGKTHLLQAI--------GNEALANGPNARVVYL 149 (408)
T ss_pred CCCCchhheeeC-CchHHHHHH-HHHHHhccCCcCC-cEEEECCCCCCHHHHHHHH--------HHHHHhhCCCceEEec
Confidence 357999986654 455555543 3333332222244 4889999999999998431 2222222222335666
Q ss_pred ehhhhhhhhhhcccC
Q 004378 148 SAMEIYNEAIRDLLS 162 (758)
Q Consensus 148 S~lEIYnE~V~DLL~ 162 (758)
+.-..+++-|..+..
T Consensus 150 ~se~f~~~~v~a~~~ 164 (408)
T COG0593 150 TSEDFTNDFVKALRD 164 (408)
T ss_pred cHHHHHHHHHHHHHh
Confidence 666667777777665
No 51
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.54 E-value=3.3 Score=43.09 Aligned_cols=74 Identities=19% Similarity=0.196 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 357 SDKALVKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 357 s~~~li~~Lq~Ei~~L~~eL~~~~~~~~--~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
+....+..+++|++.|+.+|........ ..+....+.+.+.++..|++++++|++++..++++++.+.......
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678899999999988876443211 1122333445566677788888888888877777777766554443
No 52
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.15 E-value=1.3 Score=49.71 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=26.7
Q ss_pred HhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhc
Q 004378 87 YEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH 138 (758)
Q Consensus 87 y~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~ 138 (758)
++.++.-+...+..|....++.||.||||||.|+ ..+++.+...
T Consensus 26 i~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------~~v~~~l~~~ 69 (366)
T COG1474 26 INQLASFLAPALRGERPSNIIIYGPTGTGKTATV--------KFVMEELEES 69 (366)
T ss_pred HHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------HHHHHHHHhh
Confidence 3333333333333444444999999999999885 4555555544
No 53
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.83 E-value=0.6 Score=54.18 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=27.7
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.....+..++..-++.|+.-|+||||||.||+.
T Consensus 245 ~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 245 FQLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 344566778889999999999999999999854
No 54
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=84.30 E-value=0.7 Score=44.61 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=20.9
Q ss_pred HHHHHhhcC-CCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSG-INSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G-~N~tIfAYGqTGSGKTyTM~G 122 (758)
.++..+-.+ ....++..++||||||++|..
T Consensus 14 ~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 14 RIINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 344444444 355667778999999999975
No 55
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=83.94 E-value=1.1 Score=46.13 Aligned_cols=49 Identities=18% Similarity=0.386 Sum_probs=31.3
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
..|+||.++... .+.++. .+..++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~~~--~~~~~~-~l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVA-RLRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccCC--cHHHHH-HHHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 468999988332 233333 24444331 23455789999999999998754
No 56
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=83.49 E-value=1.1 Score=49.72 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=17.2
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+....++-||++|+|||+++
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 345567899999999999984
No 57
>PRK08181 transposase; Validated
Probab=83.49 E-value=0.68 Score=49.93 Aligned_cols=47 Identities=23% Similarity=0.260 Sum_probs=27.9
Q ss_pred cCeecCCCCChhHHHhhh-hHHHHHHhhcCCCeeEEeeccCCCCcccccCCCC
Q 004378 73 FDRVFWGDCSTTQVYEDG-AKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 73 FD~VF~~~asQ~eVy~~~-v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii 124 (758)
||.-+.+..+...+..-. +...++ .|.| |+-||++|+||||-+.++.
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~---~~~n--lll~Gp~GtGKTHLa~Aia 127 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLA---KGAN--LLLFGPPGGGKSHLAAAIG 127 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHh---cCce--EEEEecCCCcHHHHHHHHH
Confidence 444444444444444321 212332 4555 8999999999999987643
No 58
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=83.38 E-value=1.1 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=17.6
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+....++-||++|+|||+++
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345568999999999999985
No 59
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=83.09 E-value=0.98 Score=41.04 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+...+.......++.+|++|+|||+.+
T Consensus 10 i~~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 10 LREALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 333333434556889999999999875
No 60
>PRK08727 hypothetical protein; Validated
Probab=82.87 E-value=1 Score=47.07 Aligned_cols=47 Identities=17% Similarity=0.263 Sum_probs=28.7
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC-eeEEeeccCCCCcccccCCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N-~tIfAYGqTGSGKTyTM~Gi 123 (758)
..|+||.-+.... + .... +..+ ..|.. -.|+-||++|+||||.+..+
T Consensus 14 ~~~~f~~f~~~~~-n--~~~~-~~~~----~~~~~~~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLAQ-LQAL----AAGQSSDWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CcCChhhccCCcH-H--HHHH-HHHH----HhccCCCeEEEECCCCCCHHHHHHHH
Confidence 4678988764433 2 2222 1222 22332 35999999999999997653
No 61
>PRK08939 primosomal protein DnaI; Reviewed
Probab=82.50 E-value=0.58 Score=51.27 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=34.2
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcC-CCeeEEeeccCCCCcccccCCC
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.+||.+-.....+..++.. +...+.....| ..-.|+-||++|+||||-+.++
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHH
Confidence 4555543333356666664 46666665543 2346999999999999998664
No 62
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=82.00 E-value=1 Score=54.47 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=54.6
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCc-------------chHHHHHHHHHh
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE-------------CTVADIFDYIHR 137 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------rav~dLF~~i~~ 137 (758)
|....-|.|.-.|..-++. ++..+-+|....+ .+|.|||||||||..++. .....|+..+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 3344457788888887776 4555556643333 789999999999965332 134567766654
Q ss_pred c-cccceEEEeehhhhhhhhh
Q 004378 138 H-EERAFVLKFSAMEIYNEAI 157 (758)
Q Consensus 138 ~-~~~~~~V~vS~lEIYnE~V 157 (758)
. ++..+...|||+..|.-..
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~ 97 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEA 97 (655)
T ss_pred hCCCCeEEEEeeecccCCccc
Confidence 3 4445778899999997544
No 63
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=81.97 E-value=1.1 Score=54.01 Aligned_cols=85 Identities=27% Similarity=0.438 Sum_probs=44.9
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCC-c-chHHHHHHHHHhccccceEEE
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGIT-E-CTVADIFDYIHRHEERAFVLK 146 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii-~-rav~dLF~~i~~~~~~~~~V~ 146 (758)
..+.|+.+......+..-+.. +.+.+..++++++.. +|++|++.+-- + ..+..++..+.......- .
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 94 (670)
T KOG0239|consen 26 KRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDLANSDK--T 94 (670)
T ss_pred cccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccccccCC--C
Confidence 356676666554333333333 333444555565554 89999997622 1 223333333221111111 1
Q ss_pred eehhhhhhhhhhcccCCC
Q 004378 147 FSAMEIYNEAIRDLLSTD 164 (758)
Q Consensus 147 vS~lEIYnE~V~DLL~~~ 164 (758)
...++.|++.+.|++..-
T Consensus 95 ~~~~~~~~~~~~~~~~~~ 112 (670)
T KOG0239|consen 95 SNVVEAYNERLRDLLSEL 112 (670)
T ss_pred chhHHHHHHHHhhhcccc
Confidence 117899999999999643
No 64
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=80.68 E-value=0.74 Score=49.10 Aligned_cols=129 Identities=19% Similarity=0.287 Sum_probs=71.2
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCee-EEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEee
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSS-IFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFS 148 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~t-IfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS 148 (758)
...+|...+-+...+.+.+.+ ..+++|..+- ++.||..|+|||.++-+ ++....... +-
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka--------ll~~y~~~G-------LR 82 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA--------LLNEYADQG-------LR 82 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH--------HHHHHhhcC-------ce
Confidence 456666666554444444442 5677777663 77799999999988644 333222222 44
Q ss_pred hhhhhhhhhhcccCCCCCCCc-cccCCCCc-EEEcccEEEEe-cCHHHHHHHHHHhhhhcccccccccCCCCCceeEE
Q 004378 149 AMEIYNEAIRDLLSTDNTPLR-LLDDPEKG-VVVEKVTEEIL-KDWNHLKELLSICEAQRRIGETLLNEKSSRSHQII 223 (758)
Q Consensus 149 ~lEIYnE~V~DLL~~~~~~l~-i~ed~~~g-v~V~gLte~~V-~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~If 223 (758)
.+||..+.+.||-.- +. ++..+.+- +++.+|+-..- .++..+..+|.-|...| ....-+.++|.|-|.|=
T Consensus 83 lIev~k~~L~~l~~l----~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 83 LIEVSKEDLGDLPEL----LDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYATSNRRHLVP 155 (249)
T ss_pred EEEECHHHhccHHHH----HHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEecchhhccc
Confidence 577776665555310 00 01111111 23444442211 23566777777666554 45666778888888773
No 65
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=79.28 E-value=0.85 Score=40.96 Aligned_cols=18 Identities=28% Similarity=0.206 Sum_probs=15.4
Q ss_pred EEeeccCCCCcccccCCC
Q 004378 106 IFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~Gi 123 (758)
++.+|+||+|||+++...
T Consensus 3 ~~i~~~~G~GKT~~~~~~ 20 (144)
T cd00046 3 VLLAAPTGSGKTLAALLP 20 (144)
T ss_pred EEEECCCCCchhHHHHHH
Confidence 578899999999998653
No 66
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=77.64 E-value=4.2 Score=46.14 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=36.2
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhc----CCCeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS----GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~----G~N~tIfAYGqTGSGKTyTM 120 (758)
..+.||.+.+.----..+.+.++..++.+++. -.---|.-||+.|+|||+..
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTllA 165 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQC 165 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHHH
Confidence 35677777665545556666677777777774 23345788999999999874
No 67
>PRK06921 hypothetical protein; Provisional
Probab=77.29 E-value=1.5 Score=47.18 Aligned_cols=34 Identities=32% Similarity=0.262 Sum_probs=24.1
Q ss_pred hhHHHHHHhhc---CCCeeEEeeccCCCCcccccCCC
Q 004378 90 GAKEIALSVVS---GINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 90 ~v~plV~~vl~---G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.+...++.+-. +....|+-||++|+||||.+..|
T Consensus 101 ~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 101 CAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred HHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHH
Confidence 35556665532 23456889999999999998664
No 68
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.25 E-value=2.2 Score=45.54 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=33.3
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.|.|..+-.....+..+|.. +..++..+-+|. .++-||++|+||||-..+|
T Consensus 75 ~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~Ai 125 (254)
T COG1484 75 TFEEFDFEFQPGIDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAIAI 125 (254)
T ss_pred CcccccccCCcchhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHHHH
Confidence 44443333344467777776 556666655443 4677999999999998653
No 69
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=76.77 E-value=1.4 Score=52.20 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=24.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45567777889999999999999999854
No 70
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=76.69 E-value=1.6 Score=41.90 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
++..+++|.+ ++..|+||+|||+...
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 3445566766 7788999999999864
No 71
>PRK10436 hypothetical protein; Provisional
Probab=76.64 E-value=1.5 Score=50.75 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=23.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.+..++..-++.|+..|+||||||.||.-
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45566677788999999999999999853
No 72
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=76.53 E-value=1.6 Score=50.81 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45566777778899999999999999854
No 73
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=75.90 E-value=18 Score=36.14 Aligned_cols=65 Identities=25% Similarity=0.336 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
...++|++|+.+|+.|+..-... +++ +.--+.+.++.++++|++++.+++...+.........+-
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~q---DeF-AkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQ---DEF-AKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TT---TSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHcCCcH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999865433 233 344456778888999999999888888777776655443
No 74
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=75.76 E-value=1.2 Score=45.97 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=14.9
Q ss_pred EEeeccCCCCcccccCCCC
Q 004378 106 IFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~Gii 124 (758)
+.-+|.||||||+|+.-++
T Consensus 26 ~~I~G~TGsGKS~~~~~ll 44 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVKVLL 44 (229)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4567899999999985543
No 75
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=75.48 E-value=1.3 Score=39.65 Aligned_cols=19 Identities=32% Similarity=0.372 Sum_probs=16.2
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678899999999999854
No 76
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=75.30 E-value=8 Score=41.15 Aligned_cols=54 Identities=17% Similarity=0.273 Sum_probs=33.9
Q ss_pred EecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEcCCCccc
Q 004378 187 ILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDLAGSERA 258 (758)
Q Consensus 187 ~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDLAGSEr~ 258 (758)
.+.+++++...+..+... ..+ ....-|.-+++|.|..... -.|.||||+|-.+.
T Consensus 85 ~~~~~~~v~~~i~~~~~~-~~~-----~~~~~s~~~i~l~i~~p~~------------~~ltLIDlPGl~~~ 138 (240)
T smart00053 85 KFTDFDEVRNEIEAETDR-VTG-----TNKGISPVPINLRVYSPHV------------LNLTLIDLPGITKV 138 (240)
T ss_pred ccCCHHHHHHHHHHHHHH-hcC-----CCCcccCcceEEEEeCCCC------------CceEEEeCCCcccc
Confidence 346788888888765542 111 1123466688888865421 24899999999643
No 77
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.10 E-value=3 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=17.4
Q ss_pred CCCeeEEeeccCCCCcccccC
Q 004378 101 GINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~ 121 (758)
|-+.+||-||++|+|||.|+.
T Consensus 779 gpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 445678899999999999863
No 78
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=74.90 E-value=1.5 Score=46.48 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
.+.|+..|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5566777999999999973
No 79
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=74.86 E-value=2.9 Score=47.61 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=33.4
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc--C--CCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTM 120 (758)
..+|+.|-+.+.--+++-+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 467777777654445555555555543 2333 2 2456889999999999986
No 80
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.10 E-value=3 Score=48.17 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=35.1
Q ss_pred CCcccccCeecCCCCChhHHHhhhhHHHHHHh--hcC--CCeeEEeeccCCCCcccccCCC
Q 004378 67 FPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV--VSG--INSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 67 ~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~v--l~G--~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
....|+||.-+-.. ++...|. .+..+.... ..| ||. +|-||++|+||||.+..+
T Consensus 104 l~~~~tFdnFv~g~-~N~~a~~-~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~Ai 161 (445)
T PRK12422 104 LDPLMTFANFLVTP-ENDLPHR-ILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQAA 161 (445)
T ss_pred CCccccccceeeCC-cHHHHHH-HHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHHH
Confidence 34579999877543 5555554 355555433 223 443 678999999999998653
No 81
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=74.05 E-value=1.2 Score=41.06 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=12.9
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
..+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 357899999999999885
No 82
>PF13245 AAA_19: Part of AAA domain
Probab=73.76 E-value=2 Score=37.46 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
|...+. -+..++.-|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 444455 333344589999999999754
No 83
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=73.75 E-value=2 Score=47.73 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=22.5
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
+.+..++.--.+.|+-.|+||||||+||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 445555544457799999999999999854
No 84
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=73.26 E-value=7.6 Score=41.92 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=68.8
Q ss_pred hhcCCCCCCCCeEEEEEcCCCCchhhhcCCCCc-eEeeCCcEEEeecCCCCCC------CCCcccccCeecCCCCChhHH
Q 004378 14 KMQAPSAREEKILVLVRLRPLSEKEITADEATD-WECINDTTILYRNTLREGS------TFPSAYTFDRVFWGDCSTTQV 86 (758)
Q Consensus 14 ~~~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~-~~~~~~~ti~~~~~~~~~s------~~~~~F~FD~VF~~~asQ~eV 86 (758)
+..+--+....-.-+|||-....+|+......+ ++..++.-+-+-.+..+.+ ...-.-++--|=+-+..-++|
T Consensus 88 qnt~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqei 167 (408)
T KOG0727|consen 88 QNTAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEI 167 (408)
T ss_pred ccCceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHH
Confidence 344444556667789999999999975443221 1111111111111100000 001123444444444455566
Q ss_pred HhhhhHHHHHHhh---cCCC--eeEEeeccCCCCccccc-----------------------CCCCcchHHHHHHHHHhc
Q 004378 87 YEDGAKEIALSVV---SGIN--SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRH 138 (758)
Q Consensus 87 y~~~v~plV~~vl---~G~N--~tIfAYGqTGSGKTyTM-----------------------~Gii~rav~dLF~~i~~~ 138 (758)
-+.+-.|+...-+ =|++ -.|+.||+.|+|||-.. .|--||.++|+|....++
T Consensus 168 reavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlaken 247 (408)
T KOG0727|consen 168 REAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKEN 247 (408)
T ss_pred HHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhcc
Confidence 6666666665443 1443 35899999999998544 256678888888877654
Q ss_pred c
Q 004378 139 E 139 (758)
Q Consensus 139 ~ 139 (758)
.
T Consensus 248 a 248 (408)
T KOG0727|consen 248 A 248 (408)
T ss_pred C
Confidence 3
No 85
>PF12846 AAA_10: AAA-like domain
Probab=73.04 E-value=1.5 Score=45.92 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4567889999999999985
No 86
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=72.95 E-value=3 Score=45.98 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=27.3
Q ss_pred CCCChhHHHhhhhHHHHHHhhcC-CCeeEEeeccCCCCccccc
Q 004378 79 GDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 79 ~~asQ~eVy~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTM 120 (758)
|...-+-++++.+..++...+.+ .---.+-||+.|+|||.|.
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33333445555555555555555 4445788999999999997
No 87
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=72.95 E-value=2.2 Score=48.17 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=20.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
+++.++. .++.|+..|+||||||+||..
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 3444433 456788899999999999744
No 88
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.91 E-value=2.6 Score=45.68 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=26.4
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..++++.+.--.-+.|+..|+|||||+.||.
T Consensus 115 LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 115 LPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 4567777777788889999999999999994
No 89
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.74 E-value=1.6 Score=44.43 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.9
Q ss_pred eeEEeeccCCCCcccccC
Q 004378 104 SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (758)
+.|+-.|+||||||+++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 578889999999999974
No 90
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=72.61 E-value=3.1 Score=43.55 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=17.7
Q ss_pred hcCCCeeEEeeccCCCCcccccC
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
+......++-+|+.|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 44445578889999999998863
No 91
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=72.36 E-value=4.4 Score=45.32 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=20.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++..++.+. +.|+-.|.||||||+++
T Consensus 164 ~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 164 KFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 3444555555 77888999999999998
No 92
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=72.04 E-value=2.3 Score=47.68 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=19.9
Q ss_pred hhcCCCeeEEeeccCCCCcccccCC
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
++.--.+.|+..|+||||||.||..
T Consensus 129 ~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 129 AIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHhccCCEEEEECCCCCCHHHHHHH
Confidence 3334568899999999999999844
No 93
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=72.01 E-value=2.6 Score=45.18 Aligned_cols=29 Identities=31% Similarity=0.339 Sum_probs=21.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.+..++..-.+.|+-.|.||||||.||..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34455555566788889999999999854
No 94
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=71.36 E-value=2.7 Score=47.48 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=28.7
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc--C--CCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTM 120 (758)
.+.||.|.+-+..-+++.+.+..|+.. .++. | ....|+-||++|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 345555554443334444444444433 2222 2 2345899999999999875
No 95
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=71.31 E-value=1.5 Score=44.18 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCcccccCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.-.|+-||++|+||||...++
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai 67 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAI 67 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHH
Confidence 345899999999999998654
No 96
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=70.60 E-value=2.7 Score=42.82 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=20.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.+..++...+..++..|..||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4455665555556668999999999873
No 97
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=69.17 E-value=2.7 Score=42.15 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|...+-.|.+..++-||+.|+|||+.|
T Consensus 9 ~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 9 EKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44444455677889999999999999976
No 98
>PRK09183 transposase/IS protein; Provisional
Probab=68.66 E-value=2.8 Score=44.82 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.0
Q ss_pred cCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 73 FDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 73 FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
||.-|.+..+...+..-..... +-.|.| |+-+|++|+||||.+.++
T Consensus 77 fd~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 77 YDFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred cccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHHHH
Confidence 4544555555544433211111 224554 567999999999998654
No 99
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.01 E-value=3.2 Score=46.63 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=60.4
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCC-CC--------CcccccCeecCCCCChhHHHhhhhHH
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGS-TF--------PSAYTFDRVFWGDCSTTQVYEDGAKE 93 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s-~~--------~~~F~FD~VF~~~asQ~eVy~~~v~p 93 (758)
..-+.+|++.+...++.... ..-.+.+..+..+...++... +. .-.-+|+.|=+-+..-++|.+.+-.|
T Consensus 93 ~g~~~vV~i~~~vd~~~L~p--G~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELP 170 (406)
T COG1222 93 TGPKFVVNILSFVDRDLLEP--GMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELP 170 (406)
T ss_pred CCCeEEEeccCCcCHHHcCC--CCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhccc
Confidence 34567888888877765322 222233433322222222110 00 01234444444443445566666666
Q ss_pred HHH-Hhhc--CCCe--eEEeeccCCCCccccc-----------------------CCCCcchHHHHHHHHHhcc
Q 004378 94 IAL-SVVS--GINS--SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (758)
Q Consensus 94 lV~-~vl~--G~N~--tIfAYGqTGSGKTyTM-----------------------~Gii~rav~dLF~~i~~~~ 139 (758)
|.+ .+|+ |+.- -|+.||+.|+|||-.- .|--+|.+++||....++.
T Consensus 171 L~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAreka 244 (406)
T COG1222 171 LKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKA 244 (406)
T ss_pred ccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcC
Confidence 654 2332 5543 5899999999998644 2444566777777665443
No 100
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=67.81 E-value=3.7 Score=46.52 Aligned_cols=39 Identities=23% Similarity=0.445 Sum_probs=28.9
Q ss_pred eeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeehhhhhhh
Q 004378 104 SSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNE 155 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE 155 (758)
..|+-||.+||||||+ ++.+|+..+ .-.|++.++|-|.=
T Consensus 31 S~~~iyG~sgTGKT~~--------~r~~l~~~n-----~~~vw~n~~ecft~ 69 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYL--------VRQLLRKLN-----LENVWLNCVECFTY 69 (438)
T ss_pred eeEEEeccCCCchhHH--------HHHHHhhcC-----CcceeeehHHhccH
Confidence 3469999999999998 455666552 22588899988853
No 101
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=67.04 E-value=42 Score=29.43 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
.|..|+.++..|+.+-. ....+...|+.++.+|+.++...+.|+..++..+.
T Consensus 19 ti~~Lq~e~eeLke~n~----------------~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNN----------------ELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566677776666431 12245677888999999999999999999887764
No 102
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=66.59 E-value=2.4 Score=38.78 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.2
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999874
No 103
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=65.63 E-value=3.8 Score=44.81 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..++..++.+ ...|+-.|.||||||++|.
T Consensus 122 ~~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 122 RDVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 3445555554 4567788999999999974
No 104
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=65.55 E-value=3.8 Score=45.27 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.++..++.+. ..|+-.|.||||||++|..
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~a 167 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVNA 167 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 4555566553 4566669999999988744
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=65.34 E-value=7.9 Score=43.15 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=28.1
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc--CC--CeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G~--N~tIfAYGqTGSGKTyTM~ 121 (758)
.+.||.+.+-+.--+++.+.+..|+.. ..+. |. ...|+-||++|+|||+.+.
T Consensus 118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHH
Confidence 345555555443333343333333322 1111 22 3358999999999998863
No 106
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.81 E-value=2.7 Score=43.09 Aligned_cols=17 Identities=41% Similarity=0.446 Sum_probs=14.7
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 47788999999999964
No 107
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=64.77 E-value=5 Score=43.38 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=26.3
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
+||.+.+ ++++.+. +...+-.|....++-||++|+|||+++..
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 5677664 3444333 22222244434588899999999998743
No 108
>PF13479 AAA_24: AAA domain
Probab=64.43 E-value=3.3 Score=42.64 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=16.9
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45689999999999998854
No 109
>PF14282 FlxA: FlxA-like protein
Probab=64.23 E-value=32 Score=32.07 Aligned_cols=59 Identities=25% Similarity=0.350 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~ 422 (758)
...|+.|+++|..|+.+|......... -.+.+..+++.|..+|..|+.++..++.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~-----~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDL-----DAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999988765442111 12334555666666666666666655544433
No 110
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=64.21 E-value=5.6 Score=42.91 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=17.3
Q ss_pred cCC-CeeEEeeccCCCCcccccCC
Q 004378 100 SGI-NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 100 ~G~-N~tIfAYGqTGSGKTyTM~G 122 (758)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 453 35666699999999998744
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=63.89 E-value=21 Score=34.21 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 431 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~~ 431 (758)
..+++....++..|+.+.+.++.|.+.++.++|...
T Consensus 60 ~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 60 NEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 334555667788888888999999999999999764
No 112
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=63.65 E-value=5.1 Score=38.29 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=17.8
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
..++.+. ..++..|++|||||.++..
T Consensus 18 ~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 18 EALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3444442 3456778999999998754
No 113
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=63.00 E-value=4.3 Score=40.64 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCCCC
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~Gii 124 (758)
|..++.--. ..+..|+.|||||+|+..++
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~~i 38 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLASII 38 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHHHH
Confidence 344443333 45668999999999976643
No 114
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=62.54 E-value=58 Score=39.79 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=27.8
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|.||+.-|.+|||||.+.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 447754 555555555 599999999999999999985
No 115
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=62.13 E-value=5.6 Score=44.48 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=27.0
Q ss_pred CChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 81 asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|+.+|+.+...+. ......+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 468899988655443 244456788999999999985
No 116
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=61.65 E-value=12 Score=43.26 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.2
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-||++|+|||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999986
No 117
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=61.59 E-value=84 Score=38.77 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=26.9
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 72 PHVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred CcHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 346653 444444444 699999999999999999985
No 118
>PHA00729 NTP-binding motif containing protein
Probab=61.41 E-value=6.7 Score=41.48 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=25.0
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
++.++..+..|--..|+.+|.+|+||||....+
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHH
Confidence 556666666544468999999999999987554
No 119
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=61.33 E-value=3.3 Score=40.27 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=18.7
Q ss_pred hcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH 138 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~ 138 (758)
..|....++-+|..|+|||+. +..++..+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~l--------l~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSL--------LRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHH--------HHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHH--------HHHHHHHHHhc
Confidence 456677899999999999988 44566666554
No 120
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=61.28 E-value=3.7 Score=37.47 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.1
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4788999999999886
No 121
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=60.23 E-value=6.1 Score=42.90 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 36789999999999876
No 122
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=60.01 E-value=5.8 Score=44.08 Aligned_cols=29 Identities=34% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..++..++.+. ..|+..|.||||||.+|.
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34444444433 346778999999999984
No 123
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.21 E-value=8.5 Score=43.80 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=17.0
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
...|+.+|+||+|||.|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999999744
No 124
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=58.93 E-value=13 Score=46.03 Aligned_cols=51 Identities=25% Similarity=0.295 Sum_probs=32.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhc-----cccceEEEeehhhhh
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH-----EERAFVLKFSAMEIY 153 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~-----~~~~~~V~vS~lEIY 153 (758)
.+..+.+|.|+.|.| +||||||-+- +--+|+.|-+. .+.-+.|.+|=+---
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA-------fLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA-------FLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH-------HHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 344567999999998 9999999763 33344444333 223466666655443
No 125
>PRK11637 AmiB activator; Provisional
Probab=58.80 E-value=53 Score=37.61 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+.+|..++.++.+++.+++.++.++..+.+.+
T Consensus 95 ~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 95 QNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333
No 126
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=58.79 E-value=10 Score=42.18 Aligned_cols=72 Identities=21% Similarity=0.273 Sum_probs=47.5
Q ss_pred CcccccCeecCCCCChhHHHhhhhHHHHHHhhc---CCCe--eEEeeccCCCCccccc------CC--------------
Q 004378 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVS---GINS--SIFAYGQTSSGKTYTM------TG-------------- 122 (758)
Q Consensus 68 ~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~---G~N~--tIfAYGqTGSGKTyTM------~G-------------- 122 (758)
+..|+||+|-+-.---.++-+.+.-||+...+- |+.. -+.-||+.|+|||+-. +|
T Consensus 126 ~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k 205 (388)
T KOG0651|consen 126 PRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK 205 (388)
T ss_pred ccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh
Confidence 457899988775544445555666677665442 3332 4788999999999865 23
Q ss_pred ---CCcchHHHHHHHHHhcc
Q 004378 123 ---ITECTVADIFDYIHRHE 139 (758)
Q Consensus 123 ---ii~rav~dLF~~i~~~~ 139 (758)
-..|.+++.|.+...+.
T Consensus 206 yiGEsaRlIRemf~yA~~~~ 225 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYAREVI 225 (388)
T ss_pred hcccHHHHHHHHHHHHhhhC
Confidence 33467788888776554
No 127
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=58.54 E-value=6.7 Score=39.39 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.+++...+.. ...+.-.|+||||||.+|.
T Consensus 15 ~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 15 AAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 3444444543 3456778999999999873
No 128
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=58.43 E-value=7.2 Score=38.93 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=17.3
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
++.++.|.| ++..++||+|||.+
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHH
Confidence 344556877 56778999999987
No 129
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=58.20 E-value=68 Score=39.23 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 347754 444444444 699999999999999999985
No 130
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=58.03 E-value=6.4 Score=43.71 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=19.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.++..++.+. ..|+-.|.||||||++|.-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~a 163 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLANA 163 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHH
Confidence 3444444432 3477889999999999843
No 131
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=57.94 E-value=3.9 Score=41.34 Aligned_cols=18 Identities=28% Similarity=0.421 Sum_probs=13.7
Q ss_pred eEEeeccCCCCcccccCC
Q 004378 105 SIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~G 122 (758)
-++.+|+||||||.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578999999999999754
No 132
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=57.58 E-value=3.8 Score=37.54 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=18.1
Q ss_pred EEeeccCCCCcccccCCCCcchHHHHHHHH
Q 004378 106 IFAYGQTSSGKTYTMTGITECTVADIFDYI 135 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~Gii~rav~dLF~~i 135 (758)
|+-||++|.|||+.+.= .+.+|.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~----l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKE----LAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHH----HHHHHHHHh
Confidence 57899999999998632 344444444
No 133
>PTZ00424 helicase 45; Provisional
Probab=56.99 E-value=6.6 Score=43.71 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..+++|.|. +..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 345567889985 45689999999764
No 134
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=56.46 E-value=24 Score=42.06 Aligned_cols=37 Identities=24% Similarity=0.501 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
++.++..|..|++++.+-.+..+.+..++..+.++-.
T Consensus 476 i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 476 IRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666666666666666665544
No 135
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=56.19 E-value=7.4 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.+..+++|.| +++.++||||||.+
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3445678887 67778999999965
No 136
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=56.13 E-value=5 Score=51.45 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred hhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHH
Q 004378 88 EDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVA 129 (758)
Q Consensus 88 ~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~ 129 (758)
...+..+++.+.+|....++. .+||||||+||.+++.+.+.
T Consensus 419 ~~AI~ai~~a~~~g~r~~Ll~-maTGSGKT~tai~li~~L~~ 459 (1123)
T PRK11448 419 EDAIQAVEKAIVEGQREILLA-MATGTGKTRTAIALMYRLLK 459 (1123)
T ss_pred HHHHHHHHHHHHhccCCeEEE-eCCCCCHHHHHHHHHHHHHh
No 137
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=56.09 E-value=11 Score=40.78 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=15.7
Q ss_pred eEEeeccCCCCcccccCCC
Q 004378 105 SIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gi 123 (758)
.|+-.|+||+|||+|+..+
T Consensus 196 vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5666799999999998654
No 138
>PRK06547 hypothetical protein; Provisional
Probab=56.01 E-value=9.6 Score=38.27 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..++..+..+.---|.-+|.+|||||+..
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 44555555555556677799999999875
No 139
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=55.97 E-value=7.6 Score=46.70 Aligned_cols=42 Identities=21% Similarity=0.334 Sum_probs=29.8
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+||.+++.+ ..... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGqs----~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQE----RAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeCc----HHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 4777777543 33332 445556678888999999999999875
No 140
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=55.46 E-value=13 Score=45.74 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=15.2
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
.-.++-||..|+|||.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLS 55 (830)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999876
No 141
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=55.46 E-value=4.7 Score=37.95 Aligned_cols=15 Identities=27% Similarity=0.437 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 688999999999874
No 142
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=55.22 E-value=46 Score=41.29 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=28.2
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcc
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC 126 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~r 126 (758)
.+..+++++-+|.+-.+++. +||||||||-+-|+.+
T Consensus 173 AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAiaii~r 208 (875)
T COG4096 173 AIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIAIIDR 208 (875)
T ss_pred HHHHHHHHHhcCCceEEEEE-ecCCCcceeHHHHHHH
Confidence 56778889999999965554 7999999998654443
No 143
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.01 E-value=1.2e+02 Score=26.74 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
.|.-||-||..|+.+-.+. ...........+.|+.+..+|+.+-...|.|+..|+-.+
T Consensus 19 TI~LLQmEieELKEknn~l---------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkm 76 (79)
T COG3074 19 TITLLQMEIEELKEKNNSL---------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKM 76 (79)
T ss_pred HHHHHHHHHHHHHHHhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667788888887754221 122223344567788889999998888898888877544
No 144
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=54.97 E-value=39 Score=38.53 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCC
Q 004378 277 SLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (758)
Q Consensus 277 SL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISP 325 (758)
-|..+-.++..-++++ ++.+|+---=+=|.+.|+.+++ ++||.+..
T Consensus 195 ~l~~F~~l~~~T~~R~--~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~~ 240 (406)
T PF02388_consen 195 ELDDFYDLYKETAERK--GFSIRSLEYFENLYDAFGDKAK-FFLAELNG 240 (406)
T ss_dssp HHHHHHHHHHHHHHHT--T-----HHHHHHHHHHCCCCEE-EEEEEECC
T ss_pred HHHHHHHHHHHHHhhC--CCcccCHHHHHHHHHhcCCCeE-EEEEEEcH
Confidence 4677777777766643 5666665555556677766644 77777743
No 145
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=54.84 E-value=5.8 Score=41.84 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=16.1
Q ss_pred CCeeEEeeccCCCCcccccCC
Q 004378 102 INSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G 122 (758)
.++.++..|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 677788888999999999843
No 146
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=54.57 E-value=5.8 Score=39.82 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46888999999999963
No 147
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=54.09 E-value=5.6 Score=37.29 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 148
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=54.02 E-value=10 Score=41.93 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=47.3
Q ss_pred ccCeecCCCCChhHHHhhhhHHH-HHHhhcCCC---eeEEeeccCCCCccccc-----------------------CCCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEI-ALSVVSGIN---SSIFAYGQTSSGKTYTM-----------------------TGIT 124 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~pl-V~~vl~G~N---~tIfAYGqTGSGKTyTM-----------------------~Gii 124 (758)
..+-|-+-+..-+.+=+.++.|+ ..++|.|.- ..|+.||+.|+||+|.- +|--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 44455554444455555555555 346777765 57999999999999965 3556
Q ss_pred cchHHHHHHHHHhccc
Q 004378 125 ECTVADIFDYIHRHEE 140 (758)
Q Consensus 125 ~rav~dLF~~i~~~~~ 140 (758)
+..+..||....++..
T Consensus 211 EkLVknLFemARe~kP 226 (439)
T KOG0739|consen 211 EKLVKNLFEMARENKP 226 (439)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 6788899998776553
No 149
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=53.84 E-value=8.9 Score=46.55 Aligned_cols=36 Identities=28% Similarity=0.332 Sum_probs=27.0
Q ss_pred hHHHhhhhHHHHHHh-hcCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSV-VSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~v-l~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.. +......+ ..+.|-||+..|.+|||||.++
T Consensus 66 PHif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchh-hhcccccccccccccceeeccccccccccch
Confidence 447765 44444444 4699999999999999999984
No 150
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=8.1 Score=46.96 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|+.||+.|+||||..
T Consensus 701 ~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLA 718 (952)
T ss_pred ccceEEECCCCCcHHHHH
Confidence 345899999999999976
No 151
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=53.76 E-value=8.6 Score=40.02 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=13.8
Q ss_pred CCeeEEeeccCCCCccccc
Q 004378 102 INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (758)
.+-.+++.|+.||||||..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999874
No 152
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=53.62 E-value=11 Score=44.00 Aligned_cols=51 Identities=24% Similarity=0.237 Sum_probs=28.8
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc--C--CCeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTM~ 121 (758)
..+||.|.+.+.-.+++.+ .+..+-. ..+. | ..-.|+-||++|+|||+...
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 5688888765543333332 2222110 0111 2 22358899999999999873
No 153
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=53.48 E-value=47 Score=31.14 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 364 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 364 ~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.|+.+..-|+..+-.... .+.+....|++++..|.+++.|+.-|.-..+.+..|++.|...+...
T Consensus 9 KLraQ~~vLKKaVieEQ~--k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQA--KNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555543321110 12345667888888999999999999988888888888888777743
No 154
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=53.46 E-value=6.6 Score=44.10 Aligned_cols=46 Identities=15% Similarity=0.340 Sum_probs=31.3
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
..|.|..|-+. +++ -.-|+..+.+-.-+.|+.+|.+||||||.+-+
T Consensus 12 ~~~pf~~ivGq----~~~----k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVGQ----EEM----KLALILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhCh----HHH----HHHHHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 37899988764 433 33344455554445688999999999998633
No 155
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=53.33 E-value=11 Score=40.76 Aligned_cols=32 Identities=31% Similarity=0.338 Sum_probs=25.2
Q ss_pred hhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 88 EDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 88 ~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
...+.||+ ..+.--+..|-.||+|++|||.++
T Consensus 179 ~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 179 AAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 34455666 566677788999999999999988
No 156
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=52.53 E-value=9 Score=43.43 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=19.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678887 788899999999874
No 157
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=52.28 E-value=6.1 Score=35.92 Aligned_cols=15 Identities=40% Similarity=0.282 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999875
No 158
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=52.27 E-value=7.8 Score=37.50 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.4
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
+--.|.||+||||+-
T Consensus 56 lSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 56 LSFHGWTGTGKNFVS 70 (127)
T ss_pred EEeecCCCCcHHHHH
Confidence 456799999999973
No 159
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=52.24 E-value=6.4 Score=44.06 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.++..++. ....|+..|.||||||++|..
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 34444443 234477789999999999843
No 160
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=52.16 E-value=9.6 Score=45.00 Aligned_cols=30 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred hHHHHHHhhcCCC--eeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGIN--SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~N--~tIfAYGqTGSGKTyTM 120 (758)
++..++..+.|.. ..++.+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5566666666653 46888999999999996
No 161
>PRK13764 ATPase; Provisional
Probab=51.39 E-value=8.4 Score=46.23 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=17.3
Q ss_pred CCeeEEeeccCCCCcccccCC
Q 004378 102 INSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~G 122 (758)
....|+..|+||||||+++..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 344589999999999999855
No 162
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=51.01 E-value=39 Score=35.55 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 389 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 389 ~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
.+.+++++.+|..|.+-++.-.++||.++.+++.|+
T Consensus 25 ~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll 60 (214)
T PF07795_consen 25 NEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLL 60 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888999999999999999999999887
No 163
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.10 E-value=10 Score=42.99 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.|. ++-++||||||.+.
T Consensus 38 aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 38 ALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHhCCCcE--EEECCCCchHHHHH
Confidence 34457889874 55669999999874
No 164
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.78 E-value=1.3e+02 Score=26.96 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
.|.-||-||..||.+-.. ...........-..|+.++.+|+.+....+.|+..|+-.+.
T Consensus 19 tI~LLqmEieELKekn~~---------L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 19 TITLLQMEIEELKEKNNS---------LSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356677777777764311 11111111122345888899999999999999998886654
No 165
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=48.79 E-value=7.7 Score=41.12 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.0
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
...++-||++|+|||++...
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 34578899999999998643
No 166
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.55 E-value=12 Score=41.95 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=25.9
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcC-CCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTM 120 (758)
+||.|.+ |+.+-+ .+...+..| ..-+++-||+.|+|||++.
T Consensus 14 ~~~~iiG----q~~~~~----~l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDIIG----QKHIVT----AISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhccC----hHHHHH----HHHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 5666664 344333 233333344 4456889999999999876
No 167
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=48.40 E-value=12 Score=43.01 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.| |++-.+||||||.+.
T Consensus 31 ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 31 AIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 3456678987 677789999999874
No 168
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.32 E-value=12 Score=42.69 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=27.5
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
+||.+++ |+.+... ...+...+-.+.-..++-||+.|+|||+...
T Consensus 10 ~l~d~vG----q~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 10 TLDEVVG----QEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred CHHHhcC----cHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3555543 4445433 2334433445555577789999999998764
No 169
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=48.17 E-value=12 Score=40.14 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=22.7
Q ss_pred ChhHHHhhhhHHHHHHhhc--CCCeeEEeeccCCCCcccccC
Q 004378 82 STTQVYEDGAKEIALSVVS--GINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 82 sQ~eVy~~~v~plV~~vl~--G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.|+++.+. ...++..... +....++-||+.|+|||+...
T Consensus 8 G~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 8 GQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 45555554 3333332222 222347779999999998764
No 170
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=48.16 E-value=8.5 Score=39.01 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=14.8
Q ss_pred CCeeEEeeccCCCCcccccC
Q 004378 102 INSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~ 121 (758)
.-..+|..||.|||||+.+.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHH
Confidence 34568899999999998863
No 171
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=47.82 E-value=14 Score=39.45 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=17.1
Q ss_pred cCCCeeEEeeccCCCCcccccC
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.|...-++-||+.|+|||+++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 4444457889999999998863
No 172
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.69 E-value=56 Score=35.15 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHHHHHHHhccCC
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKME------REIRELTKQ-RDLAQSRVEDLLRMVGCDQ 431 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le------~ei~el~~q-~~~~q~~~~~l~~~~~~~~ 431 (758)
..+..|++||++|+..|... ..++-+++.+|-.|. ++++.+.++ .+.++.++++.++.+....
T Consensus 225 V~i~~lkeeia~Lkk~L~qk---------dq~ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQK---------DQLILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhh---------HHHHHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999988532 233445555554432 223333333 4556666666666665543
No 173
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=47.54 E-value=14 Score=42.18 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=23.9
Q ss_pred HHhhhhHHHHHHhhcC----CCeeEEeeccCCCCcccccCC
Q 004378 86 VYEDGAKEIALSVVSG----INSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 86 Vy~~~v~plV~~vl~G----~N~tIfAYGqTGSGKTyTM~G 122 (758)
.|......++.++.+- ...-|.-.|+||.|||+|+.=
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAK 222 (407)
T COG1419 182 YFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAK 222 (407)
T ss_pred hHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHH
Confidence 4444444444444443 256677889999999999843
No 174
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=47.34 E-value=31 Score=37.08 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=37.1
Q ss_pred hhHHHHHHhhc---CCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhc-cccceEEEeehhhhh
Q 004378 90 GAKEIALSVVS---GINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH-EERAFVLKFSAMEIY 153 (758)
Q Consensus 90 ~v~plV~~vl~---G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~-~~~~~~V~vS~lEIY 153 (758)
.+..+.+-+.+ .-+.+|.-||+=|||||+-| ..+...+... ...-..|.++.++.-
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l--------~~l~~~L~~~~~~~~~~i~fn~w~~~ 63 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFL--------NMLKEELKEDNKEKYIFIYFNAWEYD 63 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHH--------HHHHHHHhcccccceeeEEEccccCC
Confidence 34444444443 56788999999999999874 5566666655 344566777766654
No 175
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.31 E-value=16 Score=41.14 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=30.9
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEee
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFS 148 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS 148 (758)
..|..+|+|.+| +....||||||..+.+ -||+.+.+++...|.+-++
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaL-------Pil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFAL-------PILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhH-------HHHHhhccCCCcceEEEec
Confidence 356678899998 4566999999998743 2455555555444544444
No 176
>PLN03025 replication factor C subunit; Provisional
Probab=47.20 E-value=15 Score=40.19 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=17.2
Q ss_pred CCCeeEEeeccCCCCcccccCCC
Q 004378 101 GINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
|.-..++-||+.|+|||++...+
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 33334667999999999998653
No 177
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=47.07 E-value=13 Score=43.17 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=18.4
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..++..+..|-|. +-||++|+|||+..
T Consensus 185 e~l~~~L~~~~~i--il~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKNI--ILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 3344445555554 44999999999874
No 178
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=47.04 E-value=8.9 Score=43.44 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=17.3
Q ss_pred CeeEEeeccCCCCcccccCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gi 123 (758)
...++-+|+||+|||+|+.-+
T Consensus 137 g~ii~lvGptGvGKTTtiakL 157 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKL 157 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 457788999999999997543
No 179
>PHA02244 ATPase-like protein
Probab=46.73 E-value=23 Score=40.36 Aligned_cols=51 Identities=20% Similarity=0.199 Sum_probs=29.2
Q ss_pred CCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 65 STFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 65 s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++.....||.-|-.. ...+......+...+-.|.+ |+-+|++|+|||+..
T Consensus 86 ~~~~~l~~~d~~~ig~---sp~~~~~~~ri~r~l~~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 86 KPAGDISGIDTTKIAS---NPTFHYETADIAKIVNANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred CCcCchhhCCCcccCC---CHHHHHHHHHHHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3344455666655433 33333333344444445665 455899999999876
No 180
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=45.52 E-value=86 Score=33.14 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhcCC
Q 004378 364 HLQKELARLESELRSP 379 (758)
Q Consensus 364 ~Lq~Ei~~L~~eL~~~ 379 (758)
+++++...|+..+.+.
T Consensus 131 ~~~~~~~~lk~~~~~~ 146 (216)
T KOG1962|consen 131 KAMKENEALKKQLENS 146 (216)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3444555566655543
No 181
>PRK00295 hypothetical protein; Provisional
Probab=45.48 E-value=1.7e+02 Score=25.33 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l 423 (758)
+.+.+..+-+..++|..|++++..+..++.++
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555566665555555555554
No 182
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.81 E-value=41 Score=41.30 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=29.3
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHH-HhhcCC----CeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI----NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~----N~tIfAYGqTGSGKTyTM 120 (758)
..++||.|-+-+..-+.+.+.+..|+-. .+++.+ .-.|+-||++|+|||+.+
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 3467777765443333444333333221 122221 245889999999999875
No 183
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=44.33 E-value=17 Score=44.23 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=23.4
Q ss_pred hhHHHHHHhhc-----CCCeeEEeeccCCCCcccccCCCC
Q 004378 90 GAKEIALSVVS-----GINSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 90 ~v~plV~~vl~-----G~N~tIfAYGqTGSGKTyTM~Gii 124 (758)
.+..+++.+.. |.+..|+.. +||||||+||..+.
T Consensus 246 av~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~la 284 (667)
T TIGR00348 246 AVKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLFAA 284 (667)
T ss_pred HHHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHHHH
Confidence 46667777766 344555444 89999999997643
No 184
>PRK11637 AmiB activator; Provisional
Probab=44.31 E-value=60 Score=37.20 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 401 KMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 401 ~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
.++.+|.+++.+++.++.++.++.+.+.
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444443333
No 185
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=44.25 E-value=19 Score=43.89 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=26.8
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 457754 333333333 699999999999999999985
No 186
>PRK04195 replication factor C large subunit; Provisional
Probab=44.14 E-value=12 Score=43.37 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=21.8
Q ss_pred hHHHHHHhhcCC-CeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
+..++.....|. ...++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444455555554 557889999999999886
No 187
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=43.86 E-value=54 Score=40.29 Aligned_cols=74 Identities=12% Similarity=0.281 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCC----------c--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 359 KALVKHLQKELARLESELRSPAPASS----------T--CDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~----------~--~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~ 426 (758)
...+..|+.+|++|+.+|...+.... . ......+.+...+.+.|+..+.+|..+++.-++.++.|.+.
T Consensus 417 ~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 417 PDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566889999999888866554311 0 11122233334444455555555555555555555666666
Q ss_pred hccCCC
Q 004378 427 VGCDQD 432 (758)
Q Consensus 427 ~~~~~~ 432 (758)
+.+.+.
T Consensus 497 L~eE~~ 502 (697)
T PF09726_consen 497 LAEERR 502 (697)
T ss_pred HHHHHH
Confidence 665543
No 188
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.75 E-value=16 Score=42.17 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.++ ++..+||||||.+.
T Consensus 19 ai~~~l~g~dv--lv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRDC--FVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCCE--EEEcCCCCcHhHHH
Confidence 44567789874 55579999999763
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=43.64 E-value=10 Score=45.77 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.4
Q ss_pred eEEeeccCCCCcccccCCCC
Q 004378 105 SIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gii 124 (758)
.++-.|+.|||||||+..++
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii 194 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELI 194 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 46689999999999986543
No 190
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=43.59 E-value=81 Score=32.64 Aligned_cols=68 Identities=22% Similarity=0.329 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHh
Q 004378 358 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTK--------QRDLAQSRVEDLLRMV 427 (758)
Q Consensus 358 ~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~--------q~~~~q~~~~~l~~~~ 427 (758)
.+.++.....||..|+..|+..... ..+....+++.+.++.+++.+++.|.+ +++.++.++..+...+
T Consensus 59 Lpqll~~h~eEvr~Lr~~LR~~q~~--~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l 134 (194)
T PF15619_consen 59 LPQLLQRHNEEVRVLRERLRKSQEQ--ERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKL 134 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 4556778888888888888754322 223344566666666666655555443 3444444444444433
No 191
>PRK10536 hypothetical protein; Provisional
Probab=43.58 E-value=15 Score=39.76 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=26.4
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|.|-.|-+-+..|..... .+.+ +.-|+..|+.||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 4556555555544444332 2233 348999999999999986
No 192
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.48 E-value=14 Score=39.80 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+++.++.. +--++-.|++|+|||-++
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 33344433 556788999999999875
No 193
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=43.36 E-value=10 Score=35.51 Aligned_cols=17 Identities=41% Similarity=0.565 Sum_probs=14.1
Q ss_pred EEeeccCCCCcccccCC
Q 004378 106 IFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~G 122 (758)
++-+|++|+|||+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 56799999999998744
No 194
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=43.22 E-value=1.4e+02 Score=29.64 Aligned_cols=13 Identities=8% Similarity=0.194 Sum_probs=8.2
Q ss_pred HHHHHHHHHhccC
Q 004378 279 LTLSTVIRKLSKG 291 (758)
Q Consensus 279 ~aLg~VI~aLs~~ 291 (758)
.++.+++..|+..
T Consensus 33 ~~v~k~Ld~L~~~ 45 (169)
T PF07106_consen 33 TAVQKALDSLVEE 45 (169)
T ss_pred HHHHHHHHHHHhC
Confidence 4466677777654
No 195
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=43.14 E-value=27 Score=37.21 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=27.3
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhc-C-CCeeEEeeccCCCCcccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVS-G-INSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~-G-~N~tIfAYGqTGSGKTyT 119 (758)
+||.+ ..|+.|-.. .+.+++.+.. | .-..++-||+.|.|||..
T Consensus 22 ~L~ef----iGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 22 SLDEF----IGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp SCCCS-----S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred CHHHc----cCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 45544 457888866 5667776653 2 334688999999999864
No 196
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=43.10 E-value=8.4 Score=41.80 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.1
Q ss_pred cCCCeeEEeeccCCCCcccc
Q 004378 100 SGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyT 119 (758)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999975
No 197
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=42.97 E-value=7 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=16.4
Q ss_pred CeeEEeeccCCCCcccccCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gi 123 (758)
+--++.+|.||||||..|..+
T Consensus 42 ~~h~~i~g~tGsGKt~~i~~l 62 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQIREL 62 (410)
T ss_pred hccEEEEcCCCCCHHHHHHHH
Confidence 345789999999999876443
No 198
>PF05729 NACHT: NACHT domain
Probab=42.78 E-value=12 Score=35.40 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=14.7
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47789999999999874
No 199
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=42.78 E-value=15 Score=44.35 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4455678876 677889999999874
No 200
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=42.70 E-value=15 Score=43.41 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=23.9
Q ss_pred eEEeeccCCCCccccc------------CCCCcchHHHHHHHHHh
Q 004378 105 SIFAYGQTSSGKTYTM------------TGITECTVADIFDYIHR 137 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------------~Gii~rav~dLF~~i~~ 137 (758)
.||..|+|.|||||-- .|-+-....++|+.+..
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 3899999999999976 24444455667776654
No 201
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=42.47 E-value=18 Score=39.76 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=20.9
Q ss_pred HhhcCCCeeEEeeccCCCCcccccCC
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.--..-+.-++-||+.|||||.+|.-
T Consensus 17 ~~~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 17 ADKSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred hcccCCceEEEEECCCCCCHHHHHHH
Confidence 33456777899999999999999854
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.20 E-value=91 Score=33.91 Aligned_cols=68 Identities=16% Similarity=0.210 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.+.+++++...++.+|...... ..+......+.+.+|.+++.+|++|+.+.+.+..+|.+....+.+.
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~q--i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQ--IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544322111 1223445556666777777888888888888777777766666554
No 203
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.15 E-value=15 Score=40.03 Aligned_cols=20 Identities=35% Similarity=0.747 Sum_probs=16.3
Q ss_pred CCCe--eEEeeccCCCCccccc
Q 004378 101 GINS--SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~--tIfAYGqTGSGKTyTM 120 (758)
|+.- .|+.||+.|+|||..-
T Consensus 207 gidppkgvllygppgtgktl~a 228 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCA 228 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHH
Confidence 5543 5899999999999876
No 204
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=41.75 E-value=34 Score=41.12 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=57.2
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeeh
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSA 149 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~ 149 (758)
.++|+.+.+.+..-..+.+ .+..+. ..+..|+-+|.+||||++.- +.|...... .... .|.+.|
T Consensus 321 ~~~~~~l~g~s~~~~~~~~-----~~~~~a-~~~~pvli~Ge~GtGK~~~A--------~~ih~~s~r-~~~p-fv~vnc 384 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIH-----FGRQAA-KSSFPVLLCGEEGVGKALLA--------QAIHNESER-AAGP-YIAVNC 384 (638)
T ss_pred cccccceEECCHHHHHHHH-----HHHHHh-CcCCCEEEECCCCcCHHHHH--------HHHHHhCCc-cCCC-eEEEEC
Confidence 5678887765433333333 222332 46777999999999998753 222222111 1222 234444
Q ss_pred hhhhhhhh-hcccCCC-----CCCCccccCCCCc-EEEcccEEEEecCHHHHHHHHHHhh
Q 004378 150 MEIYNEAI-RDLLSTD-----NTPLRLLDDPEKG-VVVEKVTEEILKDWNHLKELLSICE 202 (758)
Q Consensus 150 lEIYnE~V-~DLL~~~-----~~~l~i~ed~~~g-v~V~gLte~~V~S~ee~~~lL~~g~ 202 (758)
-.+..+.+ -+|+... ....-..+...+| +++.++-.....-...+..+|+.+.
T Consensus 385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~ 444 (638)
T PRK11388 385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGV 444 (638)
T ss_pred CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCc
Confidence 44433332 2344311 1111122233344 5677766665555555666665443
No 205
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.45 E-value=64 Score=36.17 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
+....++|+.++..++.+.+.. ..+......+.+..++.||.+...|+++.|.+....++.+...+
T Consensus 219 lR~r~eeeme~~~aeq~slkRt--~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 219 LRRRREEEMERLQAEQESLKRT--EEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--HHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 5566677777766665433221 11223334455566667777778888888877777766443333
No 206
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.43 E-value=17 Score=39.84 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcccccC
Q 004378 104 SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (758)
..++-||++|+|||+...
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 357789999999999874
No 207
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=41.31 E-value=78 Score=34.27 Aligned_cols=57 Identities=26% Similarity=0.283 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDY--------VALLRKKDLQIQKMEREIRELTKQRDLA 416 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~--------~~~l~~~~~~i~~le~ei~el~~q~~~~ 416 (758)
.-+..|+++|+..+.+|..........+. .....--+..|++-+++|++|+.++..+
T Consensus 194 ~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~~L 258 (259)
T PF08657_consen 194 NSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKREL 258 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 45777888888887777654332111100 0011123445555666666666555543
No 208
>PRK02119 hypothetical protein; Provisional
Probab=41.11 E-value=2e+02 Score=25.18 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~ 422 (758)
+..+...|..|+..+.-. ...+.+.+..+-+..++|..|+.++..+..++.+
T Consensus 4 ~~~~e~Ri~~LE~rla~Q---------E~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQ---------ENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred hHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777765321 1223333444444444444444444444444433
No 209
>PRK04406 hypothetical protein; Provisional
Probab=41.01 E-value=2e+02 Score=25.33 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 004378 362 VKHLQKELARLESELR 377 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~ 377 (758)
+..+...|..|+..+.
T Consensus 6 ~~~le~Ri~~LE~~lA 21 (75)
T PRK04406 6 IEQLEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777777777663
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=40.99 E-value=17 Score=43.80 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=25.9
Q ss_pred eeEEeeccCCCCccccc-----------------------CCCCcchHHHHHHHHHhc
Q 004378 104 SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRH 138 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-----------------------~Gii~rav~dLF~~i~~~ 138 (758)
--|+.||+.|+|||.+. .|--++++.++|+.....
T Consensus 469 kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 469 KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQV 526 (693)
T ss_pred ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhc
Confidence 35999999999999876 244556777777766544
No 211
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=40.94 E-value=3.8e+02 Score=28.23 Aligned_cols=82 Identities=24% Similarity=0.402 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCC------chhHHHHHHHHHHHHHHHH
Q 004378 330 VEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASS------TCDYVALLRKKDLQIQKME 403 (758)
Q Consensus 330 ~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~------~~~~~~~l~~~~~~i~~le 403 (758)
+...|..|+-|+.=+.-. ...+--+|.+|+..|+.+-+......+ .......|++++.+|-.||
T Consensus 8 LQ~AL~~LQaa~ekRE~l----------E~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLE 77 (205)
T PF12240_consen 8 LQQALAQLQAACEKREQL----------ERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALE 77 (205)
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 456677777776544321 223566788888888887665443321 2235678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004378 404 REIRELTKQRDLAQSRVED 422 (758)
Q Consensus 404 ~ei~el~~q~~~~q~~~~~ 422 (758)
.++...+... +-++.+.+
T Consensus 78 ad~~kWEqkY-LEEs~mrq 95 (205)
T PF12240_consen 78 ADMTKWEQKY-LEESAMRQ 95 (205)
T ss_pred HHHHHHHHHH-HHHHHHHH
Confidence 9888776443 33344433
No 212
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=40.94 E-value=23 Score=39.15 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3467778999999999974
No 213
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=40.60 E-value=1.5e+02 Score=32.83 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
..+..++.+++.++.++.. ....+.+...+++.++.+++++..++..++.+++++.+...
T Consensus 209 ~eL~~lr~eL~~~~~~i~~---------~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEA---------KKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554421 12234444555555666666666666666666666665554
No 214
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=40.55 E-value=18 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.6
Q ss_pred eeEEeeccCCCCccccc-------CCCCcch
Q 004378 104 SSIFAYGQTSSGKTYTM-------TGITECT 127 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-------~Gii~ra 127 (758)
+.+.-+|+||||||..+ +|-.|+.
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~~~~ 57 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKLPRR 57 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 45667899999999777 6776653
No 215
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=40.46 E-value=12 Score=39.42 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=17.6
Q ss_pred CeeEEeeccCCCCcccccCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gi 123 (758)
...++-||..|+|||++..++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~ 32 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYL 32 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhc
Confidence 456999999999999987654
No 216
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=40.44 E-value=18 Score=42.79 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=27.7
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.+|+.+++.+.. .+.+...++.+....|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 467788775422 23333334556667788899999999975
No 217
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=40.44 E-value=24 Score=43.01 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=26.5
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|.||+.-|.+|||||.|.
T Consensus 69 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 69 PHVFAI-ADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 346654 333344444 699999999999999999986
No 218
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.44 E-value=13 Score=41.45 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
+-|+..|+||||||+.-
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 45889999999999754
No 219
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.02 E-value=27 Score=38.65 Aligned_cols=35 Identities=26% Similarity=0.452 Sum_probs=28.4
Q ss_pred eEEeeccCCCCccccc-----------------------CCCCcchHHHHHHHHHhcc
Q 004378 105 SIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRHE 139 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM-----------------------~Gii~rav~dLF~~i~~~~ 139 (758)
-|+.||..|+|||..- .|--|+.+++||+....+.
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~a 278 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 278 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcC
Confidence 4889999999998644 2667899999999887654
No 220
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.92 E-value=2.1e+02 Score=26.11 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCC-ch---hHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 360 ALVKHLQKELARLESELRSPAPASS-TC---DYVALLRK--------KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~-~~---~~~~~l~~--------~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
.-+..|+.++..|+..++......- .. +...+-.. +..+.+.+..++..|++....++.....|.+++
T Consensus 19 ~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 19 QEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466778888888887776553321 11 11111111 122233456667777766666666666666655
Q ss_pred c
Q 004378 428 G 428 (758)
Q Consensus 428 ~ 428 (758)
.
T Consensus 99 ~ 99 (100)
T PF01486_consen 99 E 99 (100)
T ss_pred c
Confidence 3
No 221
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=39.81 E-value=1.1e+02 Score=29.78 Aligned_cols=62 Identities=21% Similarity=0.297 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCCCC--CchhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 366 QKELARLESELRSPAPAS--STCDYV---------ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 366 q~Ei~~L~~eL~~~~~~~--~~~~~~---------~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
++|+-+||..-+..++.+ .+|-.. ..-.+...++++|.+++.++..++|.+..+.+.|....
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 467777877644433221 123221 11112245667788888888888888888888877654
No 222
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=39.74 E-value=26 Score=42.79 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=27.5
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 357754 444445555 599999999999999999985
No 223
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=39.74 E-value=20 Score=39.36 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=21.7
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++-+||..-|++.|.||.|||..|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 566899999999999999999876
No 224
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=39.65 E-value=17 Score=40.64 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=44.7
Q ss_pred cCeecCCCCChhHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCcccccC--CCCcchHHHHHHHHHhccccceEEEeeh
Q 004378 73 FDRVFWGDCSTTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT--GITECTVADIFDYIHRHEERAFVLKFSA 149 (758)
Q Consensus 73 FD~VF~~~asQ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM~--Gii~rav~dLF~~i~~~~~~~~~V~vS~ 149 (758)
|=+|=..+.++.+-=...+..+++.++ .||. +|.||..|.|||+.+. +|.-.+-.++|.+-. .+..-.+.||
T Consensus 60 f~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v--~epGkvlyvs- 134 (402)
T COG3598 60 FIQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLLYLCIALAAGKNLFGNKV--KEPGKVLYVS- 134 (402)
T ss_pred eeEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHHHHHHHHHhhHHHhcccc--cCCCeEEEEE-
Confidence 335555544443322345555666555 4554 5789999999999873 454455566776422 2222234444
Q ss_pred hhhhhhhh
Q 004378 150 MEIYNEAI 157 (758)
Q Consensus 150 lEIYnE~V 157 (758)
+|.|.|.+
T Consensus 135 lEl~re~~ 142 (402)
T COG3598 135 LELYREDI 142 (402)
T ss_pred eccChHHH
Confidence 56665543
No 225
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.64 E-value=1.2e+02 Score=34.84 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchh---HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 362 VKHLQKELARLESELRSPAPASSTCD---YVALLRKKDLQ-IQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~---~~~~l~~~~~~-i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
-+.+.+||++|+..|....+..+... +.....+|..+ .--|+++|.+|++.+..+..+|+.|.+....
T Consensus 116 ~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 116 EEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 45677888888887754332221111 11112222222 2348999999999999999999988855444
No 226
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=39.49 E-value=14 Score=31.38 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.8
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
.+-+|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 566799999999876
No 227
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.43 E-value=32 Score=39.82 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=16.7
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
...|+-+|.+|+|||+|..-
T Consensus 95 p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45788899999999999643
No 228
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.34 E-value=1.7e+02 Score=31.11 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=55.2
Q ss_pred cceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceecccc-----CHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHH
Q 004378 315 ARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVM-----SDKALVKHLQKELARLESELRSPAPASSTCDYV 389 (758)
Q Consensus 315 skT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~-----s~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~ 389 (758)
....|.+-|.+ ..+++.+..|. ..-.|..+-...+.+ +..+-++.++++..+|.+.|.....
T Consensus 94 ~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~-------- 160 (262)
T PF14257_consen 94 RSASLTIRVPA--DKFDSFLDELS---ELGKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT-------- 160 (262)
T ss_pred ceEEEEEEECH--HHHHHHHHHHh---ccCceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 34445555544 56777777776 222343333222222 2234566667777777776653221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 390 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 390 ~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
-..+.++|.++.+.+.+++.++.++..|.+.+.=
T Consensus 161 ------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 161 ------VEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 1235567777777788888777777777766543
No 229
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=39.28 E-value=18 Score=44.39 Aligned_cols=17 Identities=41% Similarity=0.433 Sum_probs=13.3
Q ss_pred CCCeeEEeeccCCCCcc
Q 004378 101 GINSSIFAYGQTSSGKT 117 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKT 117 (758)
|.....+-+|.||||||
T Consensus 215 ~~~~~~Ll~GvTGSGKT 231 (730)
T COG1198 215 GGFAPFLLDGVTGSGKT 231 (730)
T ss_pred ccccceeEeCCCCCcHH
Confidence 44455667899999999
No 230
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.19 E-value=19 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=19.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.| |++.++||||||.+.
T Consensus 39 ~ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 3456789998 455779999999774
No 231
>CHL00195 ycf46 Ycf46; Provisional
Probab=39.17 E-value=18 Score=42.46 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46999999999999876
No 232
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=39.13 E-value=25 Score=42.99 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=26.8
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 446753 444444444 589999999999999999986
No 233
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=38.89 E-value=31 Score=38.98 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=28.1
Q ss_pred ccc-cC-eecCCCCChhHHHhhhhHHHHHHhhcC---CCeeEEeeccCCCCccccc
Q 004378 70 AYT-FD-RVFWGDCSTTQVYEDGAKEIALSVVSG---INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~-FD-~VF~~~asQ~eVy~~~v~plV~~vl~G---~N~tIfAYGqTGSGKTyTM 120 (758)
.|. || .||+. ++.-+.++. .+.....| .+-.+.-.|++|+|||...
T Consensus 45 ~y~~F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 45 RYRFFDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eccccchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 454 45 78874 444444343 23333343 4566888999999999764
No 234
>PRK14974 cell division protein FtsY; Provisional
Probab=38.87 E-value=34 Score=38.30 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.9
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
...|.-.|.+|+|||.|+.-
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46788999999999999743
No 235
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=38.84 E-value=26 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=19.2
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.++..+..|.+. +-+|++|+|||...
T Consensus 11 ~~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 11 TSRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 34444555566554 56899999999875
No 236
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=38.79 E-value=1.6e+02 Score=25.34 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 393 ~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
.+.+..+-+..++|..|+.+...+..++.++.
T Consensus 21 e~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 21 EELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444455555555554444444443
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=38.75 E-value=15 Score=39.57 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.9
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999864
No 238
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=38.68 E-value=14 Score=36.08 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45678899999999987
No 239
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=38.66 E-value=20 Score=40.11 Aligned_cols=43 Identities=14% Similarity=0.347 Sum_probs=30.6
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
|.|..|.+ |+++ ..-++-.+++..-+-|+-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 45666654 3333 4456667778777778899999999999874
No 240
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=38.64 E-value=24 Score=41.42 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..++.|.|. ++..+||||||.+.
T Consensus 150 ~aip~il~g~dv--iv~ApTGSGKTlay 175 (518)
T PLN00206 150 QAIPAALSGRSL--LVSADTGSGKTASF 175 (518)
T ss_pred HHHHHHhcCCCE--EEEecCCCCccHHH
Confidence 345667788874 66669999999764
No 241
>PRK04325 hypothetical protein; Provisional
Probab=38.64 E-value=2.1e+02 Score=25.07 Aligned_cols=52 Identities=15% Similarity=0.262 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (758)
Q Consensus 363 ~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l 423 (758)
..+...|..|+..+.-. ...+.+.+..+-+..++|..|++++..+..++.++
T Consensus 5 ~~~e~Ri~~LE~klAfQ---------E~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 5 QEMEDRITELEIQLAFQ---------EDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666676655311 12233344444445555555555555554555443
No 242
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=38.54 E-value=18 Score=36.56 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=18.9
Q ss_pred HHhhcCC---CeeEEeeccCCCCccccc
Q 004378 96 LSVVSGI---NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 96 ~~vl~G~---N~tIfAYGqTGSGKTyTM 120 (758)
+.++.|- ...+.-||.+|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3445444 567899999999999765
No 243
>PF13173 AAA_14: AAA domain
Probab=38.39 E-value=15 Score=34.51 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=14.3
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999986
No 244
>PRK10865 protein disaggregation chaperone; Provisional
Probab=38.31 E-value=19 Score=44.99 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999975
No 245
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=38.16 E-value=28 Score=42.48 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=26.9
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 446753 444444444 589999999999999999985
No 246
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=37.95 E-value=1.4e+02 Score=34.60 Aligned_cols=67 Identities=21% Similarity=0.310 Sum_probs=48.2
Q ss_pred cceeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 349 KAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 349 ~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+|++......+..+.+|+.+|..|..-+. ++-.+...+|++|.+++.|-+.-|-.++-+++++.+.+
T Consensus 558 k~k~e~~~~~k~s~delr~qi~el~~ive------------~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 558 KAKVETDDVKKNSLDELRAQIIELLCIVE------------ALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHh
Confidence 44444444455667888888887765442 33344556788999999999999999999999988765
No 247
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.69 E-value=21 Score=41.71 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=26.1
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCC-eeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N-~tIfAYGqTGSGKTyTM 120 (758)
+||.|.++ +.+ ...+...+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divGq----~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVGQ----DHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 67777764 333 2233333334443 45889999999999886
No 248
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=37.64 E-value=15 Score=35.04 Aligned_cols=15 Identities=33% Similarity=0.426 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+..|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998863
No 249
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=37.46 E-value=29 Score=42.36 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=27.4
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 447754 444444444 699999999999999999986
No 250
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=37.28 E-value=20 Score=41.38 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..+++|.|+.+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 45667889988655 559999999764
No 251
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.23 E-value=2e+02 Score=24.61 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 388 YVALLRKKDLQIQKMEREIRELTKQRDLAQS 418 (758)
Q Consensus 388 ~~~~l~~~~~~i~~le~ei~el~~q~~~~q~ 418 (758)
+...|++.+.+...|+.+|..|+++.+.+++
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445566666666666777766666665544
No 252
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=37.22 E-value=17 Score=35.88 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEeeccCCCCccccc------CCCCcchHHHHHH
Q 004378 106 IFAYGQTSSGKTYTM------TGITECTVADIFD 133 (758)
Q Consensus 106 IfAYGqTGSGKTyTM------~Gii~rav~dLF~ 133 (758)
|+.+|..|||||+.. +|+.-..+.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHH
Confidence 788999999999765 3554444545443
No 253
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=37.10 E-value=15 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.8
Q ss_pred EEeeccCCCCcccccC
Q 004378 106 IFAYGQTSSGKTYTMT 121 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~ 121 (758)
...||+|||||++-+.
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4679999999999883
No 254
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=37.04 E-value=28 Score=43.75 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=17.3
Q ss_pred eeEEeeccCCCCccccc-------CCCCcc
Q 004378 104 SSIFAYGQTSSGKTYTM-------TGITEC 126 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-------~Gii~r 126 (758)
+..+-+|+||||||.-| +|-.++
T Consensus 26 gi~lI~G~nGsGKSSIldAI~~ALyG~~~~ 55 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAITFALYGKTPR 55 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHcCCCCC
Confidence 34556799999998665 787774
No 255
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=36.92 E-value=23 Score=38.71 Aligned_cols=30 Identities=30% Similarity=0.323 Sum_probs=20.8
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..+++..++.+. ..|+-.|.||||||..|.
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 345566666544 456667999999999873
No 256
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=36.80 E-value=15 Score=42.14 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.7
Q ss_pred eEEeeccCCCCcccccCCC
Q 004378 105 SIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gi 123 (758)
.|+-.|+||+|||+|+..+
T Consensus 223 ~i~~vGptGvGKTTt~~kL 241 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKL 241 (424)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6677799999999998653
No 257
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=36.73 E-value=30 Score=42.38 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=27.3
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 457754 444444444 599999999999999999985
No 258
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=36.70 E-value=34 Score=35.48 Aligned_cols=36 Identities=14% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHhhhhHHHHHHhhc-CCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSVVS-GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~vl~-G~N~tIfAYGqTGSGKTyTM 120 (758)
.+|..++.-+...+-. +....|.-.|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 4555544444433333 55556677799999999875
No 259
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=36.62 E-value=22 Score=43.52 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=14.1
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-||++|+|||+..
T Consensus 489 giLL~GppGtGKT~la 504 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLA 504 (733)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999876
No 260
>PRK04328 hypothetical protein; Provisional
Probab=36.54 E-value=25 Score=37.22 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=22.8
Q ss_pred hHHHHHHhhcC---CCeeEEeeccCCCCcccc
Q 004378 91 AKEIALSVVSG---INSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 91 v~plV~~vl~G---~N~tIfAYGqTGSGKTyT 119 (758)
+-+-++.++.| ...+++-+|.+|+|||.-
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~l 39 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSIF 39 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHHH
Confidence 33456788876 578899999999999864
No 261
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=36.43 E-value=24 Score=43.41 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=27.4
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
+||.+++ |+.+-.. ...+...+-.|.-..++-||++|+|||++...
T Consensus 26 tldd~vG----Qe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 26 TLEEFVG----QDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred cHHHhcC----cHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 4565554 4444332 22232233345555788899999999998743
No 262
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=36.41 E-value=24 Score=34.60 Aligned_cols=29 Identities=31% Similarity=0.458 Sum_probs=20.5
Q ss_pred eEEeeccCCCCccccc------CCCCcchHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM------TGITECTVADIFD 133 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~Gii~rav~dLF~ 133 (758)
.|+..|..|||||+.. +|+......+++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~ 39 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLR 39 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHH
Confidence 4677999999999976 2665555555543
No 263
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=36.20 E-value=21 Score=40.82 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=32.8
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+||.|++ |+.+... .+++-.-+-.|.-.+.+-||+.|+|||..-
T Consensus 22 ~lde~vG----Q~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA 65 (436)
T COG2256 22 SLDEVVG----QEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLA 65 (436)
T ss_pred CHHHhcC----hHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHH
Confidence 5666654 6777765 556655566788888999999999999753
No 264
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=36.00 E-value=21 Score=36.64 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=22.6
Q ss_pred HHHHHHhhcC---CCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVSG---INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~G---~N~tIfAYGqTGSGKTyTM 120 (758)
-+-++.++.| ....+.-+|++|||||..+
T Consensus 5 ~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 5 SKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred chhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 3556777775 4567889999999999875
No 265
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=35.90 E-value=28 Score=39.35 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=20.7
Q ss_pred HHHHHhhcCCC---eeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGIN---SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N---~tIfAYGqTGSGKTyTM 120 (758)
|++...|.|.- -|||+ |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 66777777764 35665 99999999887
No 266
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=35.88 E-value=31 Score=42.28 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=26.9
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 67 PHIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 346654 444444444 699999999999999999985
No 267
>PRK00131 aroK shikimate kinase; Reviewed
Probab=35.87 E-value=18 Score=34.82 Aligned_cols=17 Identities=24% Similarity=0.270 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
-.|+.+|.+|||||+.-
T Consensus 5 ~~i~l~G~~GsGKstla 21 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIG 21 (175)
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 36899999999999875
No 268
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.73 E-value=2e+02 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+.+...++..+++++.++..+.+.+...++.|...+
T Consensus 35 IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 35 IKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555556666666666666666666555443
No 269
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=35.71 E-value=22 Score=41.80 Aligned_cols=45 Identities=22% Similarity=0.245 Sum_probs=31.1
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.||.+++.+..-..+.+. +.. +...+..|+-+|.+||||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 37888888876544444443 222 2356888999999999998763
No 270
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=35.68 E-value=8.3 Score=43.59 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccccCC
Q 004378 105 SIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~G 122 (758)
-++..|.||||||.+|..
T Consensus 17 ~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 17 HILIIGATGSGKTQAIRH 34 (386)
T ss_dssp -EEEEE-TTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 468899999999986543
No 271
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=35.25 E-value=25 Score=39.24 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.5
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
...++..++.+. ..|+-.|.||||||.+|.
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 445666666654 688888999999998773
No 272
>PHA02653 RNA helicase NPH-II; Provisional
Probab=35.25 E-value=28 Score=42.52 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=19.0
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++..+++|.+ |+..|+||||||..+
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtqv 196 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQV 196 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhHH
Confidence 35555667765 588899999999653
No 273
>PRK06696 uridine kinase; Validated
Probab=35.24 E-value=34 Score=35.31 Aligned_cols=29 Identities=31% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHHhh---cCCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVV---SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl---~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|++.++ .+....|.--|.+|||||+..
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 33444443 455667888899999999874
No 274
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=35.15 E-value=27 Score=39.01 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=21.0
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567788878888899999999874
No 275
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=34.91 E-value=19 Score=43.03 Aligned_cols=20 Identities=30% Similarity=0.444 Sum_probs=16.0
Q ss_pred eeEEeeccCCCCcccccCCC
Q 004378 104 SSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~Gi 123 (758)
-..+-.|+.|+|||||+.=|
T Consensus 202 ~l~~I~GPPGTGKT~TlvEi 221 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEI 221 (649)
T ss_pred CceEeeCCCCCCceeeHHHH
Confidence 34667899999999998543
No 276
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.88 E-value=89 Score=26.59 Aligned_cols=28 Identities=29% Similarity=0.555 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDL 423 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l 423 (758)
..++..+++++.+++.+.+.++.+++.+
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 277
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=34.84 E-value=18 Score=35.58 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.3
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+.+|..|||||+..
T Consensus 2 i~i~G~pGsGKst~a 16 (183)
T TIGR01359 2 VFVLGGPGSGKGTQC 16 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 278
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.78 E-value=17 Score=42.59 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=16.2
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..|.-.|+||+|||+|+.-
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 4688899999999999744
No 279
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=34.77 E-value=28 Score=42.66 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.2
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
-..+++.+| |.|..|.+ +||+|||+.-
T Consensus 67 Q~eivq~AL-gkNtii~l--PTG~GKTfIA 93 (746)
T KOG0354|consen 67 QEELVQPAL-GKNTIIAL--PTGSGKTFIA 93 (746)
T ss_pred HHHHhHHhh-cCCeEEEe--ecCCCccchH
Confidence 346788889 99997776 9999999863
No 280
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=34.52 E-value=26 Score=36.29 Aligned_cols=30 Identities=23% Similarity=0.199 Sum_probs=22.7
Q ss_pred hHHHHHHhhcCC---CeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~---N~tIfAYGqTGSGKTyTM 120 (758)
+-+-++.++.|- ..+++.+|.+|+|||+-.
T Consensus 10 Gi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 10 GNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred CCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 445567777643 677888899999999865
No 281
>CHL00176 ftsH cell division protein; Validated
Probab=34.52 E-value=20 Score=43.51 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.4
Q ss_pred eeEEeeccCCCCcccccC
Q 004378 104 SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (758)
..|+-||++|+|||+...
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999999863
No 282
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.27 E-value=2e+02 Score=33.83 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 400 QKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 400 ~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
..+.++.++|+.++..++..+++|.+.+
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666655
No 283
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=34.15 E-value=33 Score=40.15 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=22.9
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCccccc---CCCCcc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM---TGITEC 126 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM---~Gii~r 126 (758)
++..+.=+..|... +|.||+.|||||... .||+|-
T Consensus 187 AKrAleiAAAGgHn-Ll~~GpPGtGKTmla~Rl~~lLPp 224 (490)
T COG0606 187 AKRALEIAAAGGHN-LLLVGPPGTGKTMLASRLPGLLPP 224 (490)
T ss_pred HHHHHHHHHhcCCc-EEEecCCCCchHHhhhhhcccCCC
Confidence 33333333344443 678999999999886 587764
No 284
>PRK07261 topology modulation protein; Provisional
Probab=33.98 E-value=19 Score=35.84 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=12.9
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-.|.+|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999999764
No 285
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=33.89 E-value=2e+02 Score=29.10 Aligned_cols=35 Identities=11% Similarity=0.301 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 394 ~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
+...+++.|++++..|.++....+...+.|...+.
T Consensus 115 ~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~ 149 (161)
T TIGR02894 115 SLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMD 149 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666666666666666665554
No 286
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=33.62 E-value=42 Score=36.48 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=22.3
Q ss_pred CCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 80 ~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
-..|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00489 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 3345554443 4455567765 455669999999886
No 287
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=33.62 E-value=42 Score=36.48 Aligned_cols=35 Identities=17% Similarity=0.114 Sum_probs=22.3
Q ss_pred CCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 80 ~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
-..|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.
T Consensus 10 r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~ 44 (289)
T smart00488 10 YPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSL 44 (289)
T ss_pred CHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHH
Confidence 3345554443 4455567765 455669999999886
No 288
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=33.55 E-value=19 Score=39.25 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=11.6
Q ss_pred eeccCCCCccccc
Q 004378 108 AYGQTSSGKTYTM 120 (758)
Q Consensus 108 AYGqTGSGKTyTM 120 (758)
-.|++|||||+||
T Consensus 32 liGpSGsGKTTtL 44 (309)
T COG1125 32 LIGPSGSGKTTTL 44 (309)
T ss_pred EECCCCCcHHHHH
Confidence 4699999999997
No 289
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.45 E-value=1.9e+02 Score=32.22 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=19.9
Q ss_pred hHHHHHHhhc-CCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVS-GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~-G~N~tIfAYGqTGSGKTyTM 120 (758)
..+.+.++.. |----++.||++|+||-+.+
T Consensus 21 ~~~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 21 LANLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred HHHHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 4444444444 43345889999999996655
No 290
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=33.12 E-value=25 Score=41.38 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=31.7
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+.||.+++.+..-..+.+. +.. +...+.-|+-+|.+||||++..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~-----~~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQ-----ARK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCccHHHHH
Confidence 468999998876444444433 112 2346778999999999998764
No 291
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=33.02 E-value=18 Score=44.45 Aligned_cols=20 Identities=30% Similarity=0.497 Sum_probs=16.5
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
|.-++..|.||||||++|.-
T Consensus 430 n~n~~I~G~tGsGKS~~~~~ 449 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQE 449 (797)
T ss_pred ccceEEEcCCCCCHHHHHHH
Confidence 45578889999999999854
No 292
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=32.99 E-value=24 Score=43.49 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=15.5
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
|-.|+.+|+||||||+-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 556788899999999987
No 293
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=32.82 E-value=22 Score=39.83 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=16.2
Q ss_pred EEeeccCCCCcccccCCCCcchH
Q 004378 106 IFAYGQTSSGKTYTMTGITECTV 128 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~Gii~rav 128 (758)
++.+|.||||||+++. +|..+
T Consensus 2 ~lv~g~tGsGKt~~~v--iP~ll 22 (384)
T cd01126 2 VLVFAPTRSGKGVGFV--IPNLL 22 (384)
T ss_pred eeEecCCCCCCccEEE--ccchh
Confidence 5788999999999873 45443
No 294
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=32.75 E-value=2.7e+02 Score=26.27 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
+.+...++..|.+|..+|+.+.+.+..++.++.+
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455666666777777777766666666554
No 295
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=32.72 E-value=19 Score=38.97 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
-|+-+|++|||||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4888999999999875
No 296
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=32.63 E-value=20 Score=33.89 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=13.9
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
+|+.+|..|||||+..
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4788999999999875
No 297
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=32.50 E-value=31 Score=40.88 Aligned_cols=43 Identities=26% Similarity=0.495 Sum_probs=30.9
Q ss_pred CcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCc
Q 004378 68 PSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGK 116 (758)
Q Consensus 68 ~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGK 116 (758)
...|+||.+.+.+..-.++- .++ .-..+.+++|+-+|.||+||
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~-----~~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVL-----ELA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred ccccchhhhccCCHHHHHHH-----HHH-HhhcCCCCcEEEecCCCccH
Confidence 45699999998653322222 222 33579999999999999999
No 298
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=32.46 E-value=33 Score=33.03 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|.-+|+.|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 299
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=32.42 E-value=33 Score=41.80 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=16.9
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+...-++..|+||||||...
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred ccCCceEEEECCCCCcHHHHH
Confidence 445556899999999999875
No 300
>CHL00181 cbbX CbbX; Provisional
Probab=32.41 E-value=20 Score=38.96 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.4
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999975
No 301
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=32.35 E-value=39 Score=39.01 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=16.2
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..|+-.|++|+|||+|+.-
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5688899999999999743
No 302
>PRK05580 primosome assembly protein PriA; Validated
Probab=32.33 E-value=24 Score=43.03 Aligned_cols=17 Identities=41% Similarity=0.417 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..++.+|+||||||.+.
T Consensus 163 ~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CcEEEECCCCChHHHHH
Confidence 45889999999999876
No 303
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.28 E-value=2.2e+02 Score=30.29 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQ 417 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q 417 (758)
..+.+|++|+..|..|-. .....|++....|..|+..|++.+.++...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~---------~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERM---------AHVEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777787777776542 1234455555555555555555554444433
No 304
>PHA02624 large T antigen; Provisional
Probab=32.27 E-value=36 Score=41.14 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=23.9
Q ss_pred HHHHHhhcCCCe--eEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINS--SIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~--tIfAYGqTGSGKTyTM~G 122 (758)
.++..++.|... ||+-||+.|||||+-..+
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 346677778776 999999999999986544
No 305
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.22 E-value=2.8e+02 Score=29.94 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 331 EQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELT 410 (758)
Q Consensus 331 eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~ 410 (758)
.-++.++.++.....+...-+.-.......+ .|.+++..++++ +.++..+++.+++.+...+
T Consensus 23 s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~----------------~~~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 23 SISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKK----------------VNTLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Confidence 3456667766666555554443333222221 444444444443 3344455566666665555
Q ss_pred ----HHHHHHHHHHHHHHHHhcc
Q 004378 411 ----KQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 411 ----~q~~~~q~~~~~l~~~~~~ 429 (758)
.....++.|++.|...+|-
T Consensus 85 ~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 85 RSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HhHHhHHHHHHHHHHHHHHHhcc
Confidence 2333344455555555553
No 306
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=32.07 E-value=29 Score=41.65 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=18.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++..++.|.++.+ .++||+|||.+.
T Consensus 33 ai~~il~g~dvlv--~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCLV--VMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEEE--EcCCCchHHHHH
Confidence 3445678988655 469999999754
No 307
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=32.03 E-value=31 Score=38.50 Aligned_cols=44 Identities=14% Similarity=0.262 Sum_probs=25.7
Q ss_pred eecCCCCChhHHHhh-hhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 75 RVFWGDCSTTQVYED-GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 75 ~VF~~~asQ~eVy~~-~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+.+-|..+..-+|+. +...++-.+.. +.-|+-.|.+|+|||...
T Consensus 37 ~~~~p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 37 DEHVPDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 333344444445542 33334444433 445888999999999874
No 308
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=31.72 E-value=22 Score=41.48 Aligned_cols=22 Identities=36% Similarity=0.524 Sum_probs=17.0
Q ss_pred hhcCCCeeEEeeccCCCCcccccC
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
+.+|.+ ++|++|||||||+...
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFL 129 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFL 129 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHH
Confidence 345554 4899999999999874
No 309
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=31.66 E-value=32 Score=41.96 Aligned_cols=30 Identities=27% Similarity=0.473 Sum_probs=23.2
Q ss_pred HHHHhh--cCCCeeEEeeccCCCCcccccCCC
Q 004378 94 IALSVV--SGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 94 lV~~vl--~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.+..++ +|-.+|+..-|..|||||.|+.++
T Consensus 411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~V 442 (767)
T KOG1514|consen 411 FLRSFISDQGLGSCMYISGVPGTGKTATVLEV 442 (767)
T ss_pred HHHhhcCCCCCceeEEEecCCCCCceehHHHH
Confidence 344444 477779999999999999997654
No 310
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=31.63 E-value=49 Score=35.01 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=23.6
Q ss_pred eEEeeccCCCCccccc------CC-----------CCcchHHHHHHHHHhcc
Q 004378 105 SIFAYGQTSSGKTYTM------TG-----------ITECTVADIFDYIHRHE 139 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~G-----------ii~rav~dLF~~i~~~~ 139 (758)
+-..+|++|+|||.|+ .| +....+..||.-+....
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~G 85 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSG 85 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcC
Confidence 3346999999999998 23 33345677776665443
No 311
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=31.61 E-value=39 Score=32.47 Aligned_cols=32 Identities=31% Similarity=0.422 Sum_probs=21.9
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.++.+...+-.| ..|+-+|.-|+|||+-..|+
T Consensus 4 la~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l 35 (123)
T PF02367_consen 4 LAKKLAQILKPG--DVILLSGDLGAGKTTFVRGL 35 (123)
T ss_dssp HHHHHHHHHSS---EEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHhCCCC--CEEEEECCCCCCHHHHHHHH
Confidence 344455444333 56999999999999987654
No 312
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=31.60 E-value=26 Score=39.60 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.2
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|+.-+|+..|+.|+|||.-+
T Consensus 20 ~Gi~f~im~~G~sG~GKttfi 40 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFI 40 (373)
T ss_pred cCCceEEEEecCCCCchhHHH
Confidence 699999999999999999754
No 313
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.59 E-value=1.5e+02 Score=30.00 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (758)
Q Consensus 393 ~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~ 426 (758)
...+.+|+++++++++.+.+.+.++.+.+++.+.
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345667777777777777777777777766653
No 314
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=31.56 E-value=1.3e+02 Score=37.12 Aligned_cols=30 Identities=27% Similarity=0.522 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 401 KMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 401 ~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.|+.+++|..+..+.+|++.++|++.+...
T Consensus 438 ~Lq~ql~es~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 438 SLQNQLQESLKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred HHHHHHHHHHHhHHHHHHhHHHHHHHHHHH
Confidence 456666666666666666666666665433
No 315
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=31.54 E-value=22 Score=37.76 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=16.6
Q ss_pred hhcCCCee------EEeeccCCCCccccc
Q 004378 98 VVSGINSS------IFAYGQTSSGKTYTM 120 (758)
Q Consensus 98 vl~G~N~t------IfAYGqTGSGKTyTM 120 (758)
+|+|+|.+ +.-.|++|||||+.+
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHH
Confidence 45555554 355799999999876
No 316
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=31.49 E-value=28 Score=42.31 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=27.3
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+.|+.+++.+..-..+.+. +.. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHHH
Confidence 4566666554333333332 222 3456778999999999999853
No 317
>PRK00846 hypothetical protein; Provisional
Probab=31.45 E-value=3.4e+02 Score=24.29 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 363 ~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
..+...|..|+..+.-. ...+.+.+..+-+..++|..|+.++..+..++.++.
T Consensus 9 ~~le~Ri~~LE~rlAfQ---------e~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 9 QALEARLVELETRLSFQ---------EQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677777766321 223444444555555666666666665555555544
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=31.41 E-value=18 Score=34.95 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.2
Q ss_pred EEeeccCCCCcccc
Q 004378 106 IFAYGQTSSGKTYT 119 (758)
Q Consensus 106 IfAYGqTGSGKTyT 119 (758)
|+..|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 35679999999865
No 319
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=31.32 E-value=76 Score=40.40 Aligned_cols=12 Identities=50% Similarity=0.764 Sum_probs=10.5
Q ss_pred cCCCCcccccCC
Q 004378 111 QTSSGKTYTMTG 122 (758)
Q Consensus 111 qTGSGKTyTM~G 122 (758)
.|||||||||.+
T Consensus 67 ~TGtGKT~~~~~ 78 (986)
T PRK15483 67 ETGTGKTYVYTR 78 (986)
T ss_pred CCCCCHHHHHHH
Confidence 799999998854
No 320
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=31.13 E-value=20 Score=45.04 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=18.9
Q ss_pred CCCeeEEeeccCCCCcccccCCC
Q 004378 101 GINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.-|+-.+.+|+||||||++|..+
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~~l 495 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLTNL 495 (893)
T ss_pred CCcccEEEECCCCCCHHHHHHHH
Confidence 34777888999999999998543
No 321
>PRK08118 topology modulation protein; Reviewed
Probab=31.09 E-value=23 Score=35.23 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.3
Q ss_pred EEeeccCCCCcccc
Q 004378 106 IFAYGQTSSGKTYT 119 (758)
Q Consensus 106 IfAYGqTGSGKTyT 119 (758)
|+-.|+.|||||+.
T Consensus 4 I~I~G~~GsGKSTl 17 (167)
T PRK08118 4 IILIGSGGSGKSTL 17 (167)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999964
No 322
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.98 E-value=1.6e+02 Score=31.85 Aligned_cols=60 Identities=13% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 366 QKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 366 q~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+..+.+|+..+...... ..+....+.....+|.+|+-+++++.-+++.++.|..++...+
T Consensus 39 ~~r~~~le~~~~~~~~~--~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dl 98 (263)
T PRK10803 39 EDRVTQLERISNAHSQL--LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQI 98 (263)
T ss_pred HHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555322111 1223344444555555566666666666666655555554444
No 323
>PRK14531 adenylate kinase; Provisional
Probab=30.93 E-value=25 Score=35.11 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
-|+.+|..|||||+..
T Consensus 4 ~i~i~G~pGsGKsT~~ 19 (183)
T PRK14531 4 RLLFLGPPGAGKGTQA 19 (183)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999875
No 324
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=30.93 E-value=93 Score=26.39 Aligned_cols=16 Identities=44% Similarity=0.738 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 004378 361 LVKHLQKELARLESEL 376 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL 376 (758)
.+..|++++..++.++
T Consensus 5 E~~rL~Kel~kl~~~i 20 (66)
T PF10458_consen 5 EIERLEKELEKLEKEI 20 (66)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554443
No 325
>PRK13767 ATP-dependent helicase; Provisional
Probab=30.91 E-value=30 Score=43.47 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=17.6
Q ss_pred HHhhcCCCeeEEeeccCCCCccccc
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+++|.|+.|. .+||||||...
T Consensus 42 ~~il~g~nvli~--APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVLIS--SPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEEEE--CCCCCcHHHHH
Confidence 445789986664 49999999874
No 326
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.79 E-value=3.9e+02 Score=27.10 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhcc
Q 004378 278 LLTLSTVIRKLSK 290 (758)
Q Consensus 278 L~aLg~VI~aLs~ 290 (758)
|.|+..|=..|+.
T Consensus 30 L~AFeEvg~~L~R 42 (161)
T TIGR02894 30 LSAFEEVGRALNR 42 (161)
T ss_pred HHHHHHHHHHHcc
Confidence 4555555555543
No 327
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=30.72 E-value=32 Score=39.90 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=27.0
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCC-eeEEeeccCCCCcccccC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N-~tIfAYGqTGSGKTyTM~ 121 (758)
+||.|++.+ .+ +..+...+-.|.- -+++-||+.|+|||.+..
T Consensus 15 ~~~diiGq~----~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQD----AV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCcH----HH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 677777643 33 2334444445543 457779999999998873
No 328
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.69 E-value=30 Score=40.75 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=25.9
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCe-eEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINS-SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~-tIfAYGqTGSGKTyTM 120 (758)
+||.|.+. +.+- +.|-..+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~dliGQ----e~vv----~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 11 SFKDLVGQ----DVLV----RILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred CHHHhcCc----HHHH----HHHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 56666653 3332 2233333445544 7999999999999865
No 329
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.65 E-value=1.2e+02 Score=31.56 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 004378 362 VKHLQKELARLESELR 377 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~ 377 (758)
-.+|..++..|+.+++
T Consensus 38 na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 38 NAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554444
No 330
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=30.65 E-value=42 Score=40.87 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=26.3
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
..||.- +......++ .+.|-||+.-|.+|||||.|+
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 67 PHIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred CcHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 346653 333344443 589999999999999999996
No 331
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=43 Score=38.84 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=16.8
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
+....|+-||+.|+|||+.-
T Consensus 274 ~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred CCCCeeEEECCCCCCHHHHH
Confidence 44557999999999999876
No 332
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.60 E-value=21 Score=39.39 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=16.2
Q ss_pred CCeeEEeeccCCCCcccccC
Q 004378 102 INSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~ 121 (758)
..-+|+-.|.||||||+.|.
T Consensus 142 ~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred cCCcEEEECCCCCCHHHHHH
Confidence 34457888999999999984
No 333
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=30.59 E-value=23 Score=34.86 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.4
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.|+-.|++|||||..+.
T Consensus 3 ~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46788999999999863
No 334
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=30.56 E-value=30 Score=40.62 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=20.7
Q ss_pred HHHhhcCCCe------eEEeeccCCCCcccccC
Q 004378 95 ALSVVSGINS------SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 95 V~~vl~G~N~------tIfAYGqTGSGKTyTM~ 121 (758)
+..+++|.+. .|+-.|++|||||+.|.
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 4456777554 46789999999999885
No 335
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=30.39 E-value=4.1e+02 Score=27.16 Aligned_cols=52 Identities=23% Similarity=0.404 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRV 420 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~ 420 (758)
..+..|+.++..|+.+++ +....++++...++.+..|+.-|+-+...++.++
T Consensus 116 ~~l~~l~~~~~~L~~~~~---------~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~ 167 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIK---------DLEEELKEKNKANEILQDELQALQLQLNMLEEKL 167 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665543 2233444555455555555444444444333333
No 336
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=30.18 E-value=42 Score=41.65 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=26.9
Q ss_pred hHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 84 TQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 84 ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 67 PHIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 346754 444444444 699999999999999999985
No 337
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=30.18 E-value=2.9e+02 Score=35.95 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHHHhcCCC
Q 004378 333 TRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRSPA 380 (758)
Q Consensus 333 TlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~eL~~~~ 380 (758)
+..|=+|-.+|+.|+.....- ...+-+.++++.+...+..|....
T Consensus 1177 ~~rt~rl~~~A~~l~~tGv~g---ay~s~f~~me~kl~~ir~il~~~s 1221 (1758)
T KOG0994|consen 1177 ALRTHRLINRAKELKQTGVLG---AYASRFLDMEEKLEEIRAILSAPS 1221 (1758)
T ss_pred HHHHHHHHHHHHHhhhccCch---hhHhHHHHHHHHHHHHHHHhcCCC
Confidence 566777888999988776654 344556677777777777775443
No 338
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=30.15 E-value=38 Score=34.72 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=23.1
Q ss_pred hHHHHHHhhcCC---CeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~---N~tIfAYGqTGSGKTyTM~ 121 (758)
+-+-++.++.|- ...+.-+|.+|+|||..+.
T Consensus 8 Gi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 8 GCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 445567778543 4578999999999998763
No 339
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=30.13 E-value=35 Score=40.60 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=19.5
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++..+++|.|+ ++..+||+|||.+.
T Consensus 20 ~~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 344567889875 55569999999875
No 340
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=30.03 E-value=25 Score=29.74 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.4
Q ss_pred EEeeccCCCCcccccCC
Q 004378 106 IFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~G 122 (758)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56678889999998644
No 341
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=30.00 E-value=1.2e+02 Score=35.15 Aligned_cols=8 Identities=0% Similarity=-0.056 Sum_probs=3.4
Q ss_pred EEeecCCC
Q 004378 319 IICTLSPA 326 (758)
Q Consensus 319 mIatISPs 326 (758)
++++++|+
T Consensus 25 ~~~~~s~s 32 (420)
T COG4942 25 AVLAAAFS 32 (420)
T ss_pred cccccchh
Confidence 33444443
No 342
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=29.85 E-value=30 Score=41.08 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=29.4
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|.|+.+++.+..-..+.+ .+.. +...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~~m~~~~~-----~i~~-~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQ-----TILL-YARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCCCHHHHH
Confidence 4678877776543233222 2222 3567889999999999998753
No 343
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=29.73 E-value=25 Score=32.83 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-.|++|||||+.-
T Consensus 2 I~i~G~~GsGKst~a 16 (147)
T cd02020 2 IAIDGPAGSGKSTVA 16 (147)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999864
No 344
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=29.65 E-value=26 Score=32.88 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=14.0
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 34667899999999876
No 345
>PRK08233 hypothetical protein; Provisional
Probab=29.61 E-value=25 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.144 Sum_probs=12.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3555799999999875
No 346
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=29.57 E-value=2.5e+02 Score=31.06 Aligned_cols=61 Identities=16% Similarity=0.262 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 362 VKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~--~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~ 422 (758)
...|+.++..|++.......... .......+...+.+|+.+++++.+++.++..++.+++.
T Consensus 186 ~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 186 KAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665443221110 00112234444445554444555555555444444433
No 347
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=29.46 E-value=1.9e+02 Score=35.04 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.++-+|+.|+|||..|
T Consensus 30 ~~~i~G~Ng~GKttll 45 (650)
T TIGR03185 30 IILIGGLNGAGKTTLL 45 (650)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4557799999999887
No 348
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=29.37 E-value=48 Score=34.88 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=23.4
Q ss_pred hHHHHHHhhc--CCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVS--GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~--G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4556666666 67778999999999999864
No 349
>PTZ00110 helicase; Provisional
Probab=29.31 E-value=34 Score=40.51 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+. ++.++||||||.+.
T Consensus 160 aip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 160 GWPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHHhcCCCE--EEEeCCCChHHHHH
Confidence 34567889876 45679999999874
No 350
>PRK02793 phi X174 lysis protein; Provisional
Probab=29.16 E-value=3.6e+02 Score=23.54 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 365 LQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (758)
Q Consensus 365 Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l 423 (758)
+...|..|+..+ ..-...+.+.+..+-+..++|..|++++..+..++.++
T Consensus 6 ~e~Ri~~LE~~l---------afQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRL---------AFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 351
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=29.10 E-value=34 Score=42.23 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=19.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.|+.+.| +||||||.+.
T Consensus 44 ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 44 AAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 445678999976655 8999999875
No 352
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=29.00 E-value=37 Score=40.98 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.6
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
.....++..|+||||||...
T Consensus 254 ~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 254 DVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCccEEEECCCCCcHHHHH
Confidence 33345789999999999864
No 353
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=28.96 E-value=38 Score=34.55 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred hHHHHHHhhcC-C--CeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSG-I--NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G-~--N~tIfAYGqTGSGKTyTM~ 121 (758)
+-+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 4 G~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 4 GSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 34567777754 3 4467889999999998764
No 354
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=28.92 E-value=26 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
++.+|.+|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999865
No 355
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=28.91 E-value=36 Score=34.71 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 106 IfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
|+.+|..|||||+.- +|+....+.+|+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHH
Confidence 678999999998754 57766667676654
No 356
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.86 E-value=36 Score=41.37 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=15.0
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999999874
No 357
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=28.66 E-value=55 Score=35.89 Aligned_cols=32 Identities=13% Similarity=0.398 Sum_probs=23.8
Q ss_pred eEEeeccCCCCccccc-----CC------CCcchHHHHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM-----TG------ITECTVADIFDYIH 136 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM-----~G------ii~rav~dLF~~i~ 136 (758)
.|+.-|.+|||||..| .| +.|..+..+.+.+.
T Consensus 3 ~vIiTGlSGaGKs~Al~~lED~Gy~cvDNlP~~Ll~~l~~~~~ 45 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRALEDLGYYCVDNLPPSLLPQLIELLA 45 (284)
T ss_pred EEEEeCCCcCCHHHHHHHHHhcCeeEEcCCcHHHHHHHHHHHH
Confidence 4677899999999999 34 55666666666555
No 358
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=28.66 E-value=24 Score=35.41 Aligned_cols=15 Identities=40% Similarity=0.339 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999987
No 359
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=28.65 E-value=2.3e+02 Score=36.36 Aligned_cols=63 Identities=16% Similarity=0.323 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.-+..|.++|+.+++++. ......+.+.+.+++.|+++++.++.+...+..+++++.+.+-..
T Consensus 372 ~~~d~l~k~I~~~~~~~~--------~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~ 434 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTN--------NELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE 434 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH--------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666551 122334444455555555555555555555555555544444433
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.58 E-value=26 Score=40.16 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=16.7
Q ss_pred eeEEeeccCCCCcccccCCC
Q 004378 104 SSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~Gi 123 (758)
-.|+-.|++|+|||+|+..+
T Consensus 207 ~ii~lvGptGvGKTTt~akL 226 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKL 226 (407)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 35778899999999998664
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=28.53 E-value=50 Score=38.29 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=15.5
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..|+..|++|+|||+|+.-
T Consensus 224 ~vi~lvGptGvGKTTtaaK 242 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAK 242 (432)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4577789999999999743
No 362
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=28.52 E-value=31 Score=40.85 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=30.2
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|.||.+++.+..-..+.+ .+.. +...+..|+-+|.+||||++..
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~-----~i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRA-----LVRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred cccchhheeeCCHHHHHHHH-----HHHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 34788888776543223322 2222 3566889999999999998754
No 363
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=28.46 E-value=25 Score=36.10 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+..|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999774
No 364
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=28.46 E-value=44 Score=34.02 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=21.5
Q ss_pred HHHHHhhc-CCC--eeEEeeccCCCCcccccC
Q 004378 93 EIALSVVS-GIN--SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 93 plV~~vl~-G~N--~tIfAYGqTGSGKTyTM~ 121 (758)
+-++.++. |+. ..+..+|.+|||||....
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 44677775 444 458899999999998753
No 365
>PHA01747 putative ATP-dependent protease
Probab=28.44 E-value=28 Score=39.63 Aligned_cols=34 Identities=24% Similarity=0.117 Sum_probs=27.1
Q ss_pred HhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 87 YEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 87 y~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+=.-.-|+|+.-..+-|.-++=.|+.||||||+.
T Consensus 174 ~L~RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 174 TLPRLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred HHHhhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 3334567777666788999999999999999984
No 366
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.35 E-value=27 Score=40.30 Aligned_cols=20 Identities=30% Similarity=0.252 Sum_probs=16.6
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
...|...|++|+|||+|+.-
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688899999999999843
No 367
>PRK06217 hypothetical protein; Validated
Probab=28.34 E-value=27 Score=34.89 Aligned_cols=15 Identities=33% Similarity=0.317 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-.|.+|||||+.-
T Consensus 4 I~i~G~~GsGKSTla 18 (183)
T PRK06217 4 IHITGASGSGTTTLG 18 (183)
T ss_pred EEEECCCCCCHHHHH
Confidence 788899999999764
No 368
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=28.33 E-value=2.9e+02 Score=33.21 Aligned_cols=54 Identities=20% Similarity=0.299 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVE 421 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~ 421 (758)
++.+++++..|+..++..+-+ .+.++....+..++.+++..++.++|.+++.+.
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS------~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGIS------GEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655332 222333334444455555555544444444443
No 369
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=28.29 E-value=19 Score=41.69 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=18.4
Q ss_pred cCCCeeEEeeccCCCCcccccCCCCcc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMTGITEC 126 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~Gii~r 126 (758)
.++|. +-.|++|+||||...++-+.
T Consensus 208 ~~~Nl--i~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 208 PNYNL--IELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred cCCcE--EEECCCCCCHHHHHHHHhHH
Confidence 55665 56799999999988665443
No 370
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=28.29 E-value=42 Score=41.92 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=20.3
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
...+++.+-++- .|+..|+||||||..+
T Consensus 10 ~~~i~~~l~~~~--~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 10 LPELLTALKTAP--QVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHHhCC--CEEEEcCCCCCHHHHH
Confidence 445565554443 4677999999999987
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=28.29 E-value=30 Score=37.35 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.0
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
.+|...|++|+|||.|..-
T Consensus 73 ~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4566669999999999743
No 372
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=28.28 E-value=25 Score=31.93 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
-|..+|.+|+|||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999864
No 373
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=28.26 E-value=45 Score=36.43 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=17.9
Q ss_pred HhhcCC-CeeEEeeccCCCCccccc
Q 004378 97 SVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
.+-.|. ...++-||+.|+|||.+.
T Consensus 29 ~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 29 AIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 333453 456889999999999876
No 374
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=28.14 E-value=25 Score=41.50 Aligned_cols=16 Identities=31% Similarity=0.627 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999864
No 375
>PRK04296 thymidine kinase; Provisional
Probab=28.12 E-value=16 Score=37.00 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=16.3
Q ss_pred eEEeeccCCCCcccccCCCC
Q 004378 105 SIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gii 124 (758)
.++-+|+.|+|||..+.+++
T Consensus 4 i~litG~~GsGKTT~~l~~~ 23 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRA 23 (190)
T ss_pred EEEEECCCCCHHHHHHHHHH
Confidence 56789999999998876643
No 376
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.96 E-value=28 Score=43.04 Aligned_cols=19 Identities=32% Similarity=0.312 Sum_probs=16.2
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..|.-.|+||+|||+|+.-
T Consensus 186 ~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4788899999999999843
No 377
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=27.84 E-value=74 Score=36.04 Aligned_cols=70 Identities=19% Similarity=0.162 Sum_probs=45.3
Q ss_pred CCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC-------------------CCCcc---hHHHHHHHHHh
Q 004378 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT-------------------GITEC---TVADIFDYIHR 137 (758)
Q Consensus 80 ~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~-------------------Gii~r---av~dLF~~i~~ 137 (758)
...|..+++- +-+.++.|-.-.++-.|+.|||||+-+- |.+.- ++..|-.++..
T Consensus 30 ~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~ 105 (408)
T KOG2228|consen 30 QDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLAL 105 (408)
T ss_pred HHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHH
Confidence 3456666654 3346678999999999999999999872 32222 55566665554
Q ss_pred ccccceEEEeehhhhh
Q 004378 138 HEERAFVLKFSAMEIY 153 (758)
Q Consensus 138 ~~~~~~~V~vS~lEIY 153 (758)
.-+....+..||-|..
T Consensus 106 e~~~~~k~~gsfte~l 121 (408)
T KOG2228|consen 106 ELNRIVKSFGSFTENL 121 (408)
T ss_pred HHhhhheeecccchhH
Confidence 4444555666666643
No 378
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=27.81 E-value=26 Score=31.59 Aligned_cols=15 Identities=33% Similarity=0.539 Sum_probs=13.0
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678899999999864
No 379
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.73 E-value=37 Score=38.48 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=24.5
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhh-cCCC-eeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVV-SGIN-SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl-~G~N-~tIfAYGqTGSGKTyTM 120 (758)
+||.|++ |+.+- ..+..++ .|.- ..++-||+.|+|||...
T Consensus 14 ~~~eiiG----q~~~~-----~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 14 KFADITA----QEHIT-----RTIQNSLRMGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred cHhhccC----hHHHH-----HHHHHHHHhCCcceeEEEECCCCCCHHHHH
Confidence 5777775 33332 2333344 4433 34777999999999764
No 380
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=27.70 E-value=25 Score=35.36 Aligned_cols=15 Identities=40% Similarity=0.328 Sum_probs=12.5
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999873
No 381
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=27.69 E-value=2.4e+02 Score=32.65 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 004378 358 DKALVKHLQKELARLESELRS 378 (758)
Q Consensus 358 ~~~li~~Lq~Ei~~L~~eL~~ 378 (758)
.+..|+.|+.||.||+..|+.
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~ 271 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSR 271 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456688899999999998863
No 382
>PRK10867 signal recognition particle protein; Provisional
Probab=27.48 E-value=61 Score=37.60 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
-..|+..|.+|+|||+|..-
T Consensus 100 p~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 35688889999999999643
No 383
>PRK01172 ski2-like helicase; Provisional
Probab=27.32 E-value=40 Score=40.82 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.3
Q ss_pred HhhcCCCeeEEeeccCCCCcccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.+.+|.| ++..++||||||..
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHH
Confidence 4567776 56678999999975
No 384
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=27.31 E-value=52 Score=40.77 Aligned_cols=18 Identities=33% Similarity=0.302 Sum_probs=15.9
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
.+.++-+|+||+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357999999999999986
No 385
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=27.28 E-value=36 Score=40.97 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHHhhcCC-CeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
|...+-.|. .-.++-||+.|+|||.+.
T Consensus 36 L~~~~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 36 LTNAFETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 333444564 336888999999999887
No 386
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=27.26 E-value=29 Score=34.01 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+..|++|||||..+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778999999999854
No 387
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.24 E-value=4.4e+02 Score=27.96 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
++..+.+...|+++.+++.++-|.+-.+.+.|...+..
T Consensus 174 Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 174 LEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 33344444555666666666666655555555555443
No 388
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=27.16 E-value=43 Score=34.36 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=21.2
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCcccccC
Q 004378 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 93 plV~~vl~-G~--N~tIfAYGqTGSGKTyTM~ 121 (758)
+-++.++. |+ ...++-+|++|+|||+...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 34566664 54 5678889999999998753
No 389
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.14 E-value=49 Score=36.77 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=26.3
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCC-CeeEEeeccCCCCcccccC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~-N~tIfAYGqTGSGKTyTM~ 121 (758)
+||.|.+ |+.+ .+.+...+-.|. ...++-||+.|+|||++..
T Consensus 15 ~~~~iig----~~~~----~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 15 TFDDVVG----QSHI----TNTLLNAIENNHLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred cHHhcCC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 5666654 3333 233444444554 4478889999999998763
No 390
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=27.11 E-value=1.5e+02 Score=34.73 Aligned_cols=13 Identities=38% Similarity=0.649 Sum_probs=8.4
Q ss_pred ccccccccccccc
Q 004378 645 SSRSLSLARSRSC 657 (758)
Q Consensus 645 ~~~~~~~~rs~s~ 657 (758)
|.|-...+.+-||
T Consensus 276 SER~~~R~~~lSC 288 (475)
T PRK13729 276 SERAIVRTRNISC 288 (475)
T ss_pred cceeEEEEeeEEe
Confidence 5555556667777
No 391
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=27.08 E-value=36 Score=38.93 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=20.5
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..++.|.++..+| +||||||-+.
T Consensus 90 ~aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hhcchhhCCCcEEEEe--ccCCCchhhh
Confidence 3456778999886665 9999999876
No 392
>PLN02199 shikimate kinase
Probab=26.97 E-value=86 Score=34.75 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=21.1
Q ss_pred HhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 87 YEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 87 y~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
-...++.+.. .+. +.+|+-.|..|||||+.-
T Consensus 89 Lk~~a~~i~~-~l~--~~~I~LIG~~GSGKSTVg 119 (303)
T PLN02199 89 LKRKAEEVKP-YLN--GRSMYLVGMMGSGKTTVG 119 (303)
T ss_pred HHHHHHHHHH-HcC--CCEEEEECCCCCCHHHHH
Confidence 4444544443 344 457888999999999875
No 393
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=26.91 E-value=2.9e+02 Score=24.99 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 391 LLRKKDLQIQKMEREIRELTKQRDLAQSR 419 (758)
Q Consensus 391 ~l~~~~~~i~~le~ei~el~~q~~~~q~~ 419 (758)
..++.-.+|..+|.+|..|+.+...+..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666666666555544443
No 394
>PRK00300 gmk guanylate kinase; Provisional
Probab=26.80 E-value=30 Score=34.71 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=14.3
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|.-.|++|||||..+
T Consensus 5 g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788899999999654
No 395
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=26.76 E-value=32 Score=32.65 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=17.0
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
...+.-|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 367778899999999999864
No 396
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=25 Score=39.67 Aligned_cols=62 Identities=29% Similarity=0.285 Sum_probs=39.1
Q ss_pred eEEeeccCCCCccccc---------------------CCCCcchHHHHHHHHHh------ccccceEEEeehhhhhhhhh
Q 004378 105 SIFAYGQTSSGKTYTM---------------------TGITECTVADIFDYIHR------HEERAFVLKFSAMEIYNEAI 157 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM---------------------~Gii~rav~dLF~~i~~------~~~~~~~V~vS~lEIYnE~V 157 (758)
-|+..|+||-|||-.- .|.+-|-+..+..-+-. ..+..-.|+.-.-|.-+|.|
T Consensus 52 NILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRi 131 (444)
T COG1220 52 NILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERI 131 (444)
T ss_pred ceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999644 46555544443332211 11122245566677889999
Q ss_pred hcccCCCCC
Q 004378 158 RDLLSTDNT 166 (758)
Q Consensus 158 ~DLL~~~~~ 166 (758)
.|+|-|..+
T Consensus 132 ld~Lvp~~~ 140 (444)
T COG1220 132 LDALVPPAK 140 (444)
T ss_pred HHHhcCCcc
Confidence 999987643
No 397
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=26.45 E-value=28 Score=42.57 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=17.4
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
|.-++..|.||||||++|.-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~ 453 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNF 453 (785)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 77788999999999999843
No 398
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=26.34 E-value=2.6e+02 Score=30.10 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 399 IQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 399 i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
+..+.+++.++++++..++.++..+.+.+.+.
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555444444443
No 399
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=26.23 E-value=77 Score=34.69 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=14.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|.+|||||..+
T Consensus 8 ~i~i~G~~GsGKtt~~ 23 (288)
T PRK05416 8 LVIVTGLSGAGKSVAL 23 (288)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5788999999999998
No 400
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.19 E-value=34 Score=36.36 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=17.2
Q ss_pred eeEEeeccCCCCccccc---CCCCc
Q 004378 104 SSIFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM---~Gii~ 125 (758)
-.++.+|++|||||..+ .|+++
T Consensus 31 e~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 31 ERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHcCcCc
Confidence 35788999999999877 46554
No 401
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=26.17 E-value=2.3e+02 Score=28.29 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 387 DYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 387 ~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
+....+.+...+++.+++++++++++.+.++.++....+.+|.-
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~kvgvv 86 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLRNCVQKVGVV 86 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEE
Confidence 45556666777778888888888887777777777766666654
No 402
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.03 E-value=4.8e+02 Score=27.96 Aligned_cols=27 Identities=7% Similarity=0.305 Sum_probs=20.3
Q ss_pred EEeecCCCcccHHHHHHHHHHHHHhhc
Q 004378 319 IICTLSPARSHVEQTRNTLLFACCAKE 345 (758)
Q Consensus 319 mIatISPs~~~~eETlsTLrFA~rAk~ 345 (758)
+|+.+.|+..+.+|+..|++|-.+..+
T Consensus 109 VlIP~~~s~lD~~eA~~t~~~v~~~~~ 135 (231)
T PF07015_consen 109 VLIPMQPSQLDADEAAKTFKWVRRLEK 135 (231)
T ss_pred EEECCCCChHHHHHHHHHHHHHHHHHH
Confidence 556667777788888888888777754
No 403
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=26.02 E-value=53 Score=35.93 Aligned_cols=16 Identities=31% Similarity=0.667 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.++.||+.|+|||..-
T Consensus 207 GvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMA 222 (424)
T ss_pred ceEeeCCCCCcHHHHH
Confidence 4899999999998643
No 404
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=26.01 E-value=3.8e+02 Score=23.26 Aligned_cols=60 Identities=23% Similarity=0.351 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
.+...|..++..+..+|+..- ...|...+. .-.+|..|+..+.++...+..++..++.+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V----~~nY~~fI~-as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLV----YENYRDFIE-ASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345667777777777775431 122333332 334677788887777777777766666553
No 405
>PRK09039 hypothetical protein; Validated
Probab=26.01 E-value=3.2e+02 Score=30.74 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHh
Q 004378 362 VKHLQKELARLESEL 376 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL 376 (758)
+..|+.+|+.|+.+|
T Consensus 139 V~~L~~qI~aLr~Ql 153 (343)
T PRK09039 139 VELLNQQIAALRRQL 153 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555554
No 406
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=25.97 E-value=68 Score=34.74 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred hcCCCeeEEeeccCCCCcccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyT 119 (758)
-.||..-|+..||+|.|||..
T Consensus 42 k~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred hccCceEEEEEecCCCCchhh
Confidence 379999999999999999864
No 407
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=25.84 E-value=1.5e+02 Score=30.35 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKK--DLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~--~~~i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
-...|..+|.+|.+.+++....- ....+.++.. .+-+..|+++|.+|.++......|+..+..
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~--s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTC--SYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655433221 1112223322 345667777777777777777777766553
No 408
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=25.84 E-value=43 Score=43.76 Aligned_cols=33 Identities=24% Similarity=0.395 Sum_probs=20.8
Q ss_pred HHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
-||.. -..++ ..+.+. -.|+..|+||||||.-+
T Consensus 74 Pi~~~-r~~Il-~ai~~~-~VviI~GeTGSGKTTql 106 (1294)
T PRK11131 74 PVSQK-KQDIL-EAIRDH-QVVIVAGETGSGKTTQL 106 (1294)
T ss_pred CHHHH-HHHHH-HHHHhC-CeEEEECCCCCCHHHHH
Confidence 35543 23333 344554 45677799999999976
No 409
>PRK02496 adk adenylate kinase; Provisional
Probab=25.79 E-value=47 Score=32.90 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=20.3
Q ss_pred EEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 106 IfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
|+..|+.|||||... .|+....+.+++..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~ 38 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQ 38 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHH
Confidence 677899999999865 46555555555543
No 410
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.74 E-value=40 Score=40.56 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=26.3
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCC-CeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
+||.|.+ |+.|.+. |...+-.|. ..+++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~----L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEP----LSSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5677665 4444443 333333443 445789999999999887
No 411
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=25.53 E-value=2.4e+02 Score=25.80 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 389 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 389 ~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
...+++...++..+.+++.+|+.+++....+-+.|++.+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666677777777777777777777777776654
No 412
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=25.51 E-value=23 Score=36.91 Aligned_cols=13 Identities=31% Similarity=0.388 Sum_probs=11.2
Q ss_pred eeccCCCCccccc
Q 004378 108 AYGQTSSGKTYTM 120 (758)
Q Consensus 108 AYGqTGSGKTyTM 120 (758)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999986
No 413
>PRK14532 adenylate kinase; Provisional
Probab=25.32 E-value=33 Score=34.03 Aligned_cols=29 Identities=17% Similarity=0.500 Sum_probs=19.8
Q ss_pred eEEeeccCCCCccccc------CCCCcchHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM------TGITECTVADIFD 133 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~Gii~rav~dLF~ 133 (758)
.|+..|..|||||+.- +|+.-..+.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr 36 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLR 36 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHH
Confidence 3788999999999765 3544444444444
No 414
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=25.15 E-value=37 Score=33.93 Aligned_cols=93 Identities=14% Similarity=0.248 Sum_probs=50.5
Q ss_pred cCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhh-cccCCCCC--------CCcc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIR-DLLSTDNT--------PLRL 170 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~-DLL~~~~~--------~l~i 170 (758)
..++..|+-+|.+||||+.. .+.|++...+. + .-.|.|.|-.+..+.+- .|+..... ..-+
T Consensus 19 a~~~~pVlI~GE~GtGK~~l--------A~~IH~~s~r~-~-~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~ 88 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL--------ARAIHNNSPRK-N-GPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGL 88 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH--------HHHHHHCSTTT-T-S-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHH
T ss_pred hCCCCCEEEEcCCCCcHHHH--------HHHHHHhhhcc-c-CCeEEEehhhhhcchhhhhhhccccccccccccccCCc
Confidence 47889999999999999764 34444422222 1 22355655555544432 23322110 1123
Q ss_pred ccCCCCc-EEEcccEEEEecCHHHHHHHHHHhh
Q 004378 171 LDDPEKG-VVVEKVTEEILKDWNHLKELLSICE 202 (758)
Q Consensus 171 ~ed~~~g-v~V~gLte~~V~S~ee~~~lL~~g~ 202 (758)
.+..++| +++.++.......-..++++|+.+.
T Consensus 89 l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~ 121 (168)
T PF00158_consen 89 LEQANGGTLFLDEIEDLPPELQAKLLRVLEEGK 121 (168)
T ss_dssp HHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSE
T ss_pred eeeccceEEeecchhhhHHHHHHHHHHHHhhch
Confidence 4444555 5677777777666667777776544
No 415
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=25.12 E-value=51 Score=34.45 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=19.8
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCcccc
Q 004378 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 93 plV~~vl~-G~--N~tIfAYGqTGSGKTyT 119 (758)
+-++.++. |+ ..+++.+|.+|||||.-
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~l 37 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIF 37 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHH
Confidence 34566665 43 56789999999999864
No 416
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=25.04 E-value=59 Score=40.00 Aligned_cols=17 Identities=35% Similarity=0.341 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
+.++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46889999999999875
No 417
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=24.65 E-value=32 Score=36.51 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=17.0
Q ss_pred hhcCCCee------EEeeccCCCCccccc
Q 004378 98 VVSGINSS------IFAYGQTSSGKTYTM 120 (758)
Q Consensus 98 vl~G~N~t------IfAYGqTGSGKTyTM 120 (758)
++.|.|-. |.-.|++|||||+-|
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 45555543 567899999999877
No 418
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.52 E-value=4.3e+02 Score=29.41 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
+.+...+++.++..|++...++..++.++.++.+.+.
T Consensus 227 l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~ 263 (312)
T smart00787 227 LEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLE 263 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555555555555443
No 419
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=24.42 E-value=88 Score=34.32 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999874
No 420
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=24.40 E-value=2e+02 Score=28.25 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 390 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (758)
Q Consensus 390 ~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~ 426 (758)
..+++.+.....+++.++.|..+++....+++.|...
T Consensus 101 ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k 137 (143)
T PF12718_consen 101 EKLREADVKAEHFERKVKALEQERDQWEEKYEELEEK 137 (143)
T ss_pred HHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3444445555555556666666666555555555544
No 421
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.32 E-value=45 Score=40.41 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=26.6
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCC-eeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N-~tIfAYGqTGSGKTyTM 120 (758)
+||.|++ |+.+... |...+-.|.- ..++-||..|+|||++.
T Consensus 14 ~f~dviG----Qe~vv~~----L~~~l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQA----LTNALTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 6777775 4544432 3333334433 46789999999999987
No 422
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=24.26 E-value=36 Score=39.10 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999875
No 423
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=24.14 E-value=39 Score=41.80 Aligned_cols=16 Identities=25% Similarity=0.198 Sum_probs=13.9
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5788999999999874
No 424
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=24.10 E-value=48 Score=42.77 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=22.0
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
=..+|..++.|.++.+.+ +||+|||.+-
T Consensus 465 Q~eaI~aiL~GrDVLVim--PTGSGKSLcY 492 (1195)
T PLN03137 465 QREIINATMSGYDVFVLM--PTGGGKSLTY 492 (1195)
T ss_pred HHHHHHHHHcCCCEEEEc--CCCccHHHHH
Confidence 345677889999965555 9999999874
No 425
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=24.10 E-value=35 Score=34.12 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999864
No 426
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=24.09 E-value=67 Score=32.01 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004378 402 MEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 402 le~ei~el~~q~~~~q~~~~~l~ 424 (758)
|..+|.+|+.+...++.+++.|.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 427
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=24.00 E-value=45 Score=40.28 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=25.3
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCC-CeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
+|+.|.+ |+.+- ..+...+-.|. .-+++-||+.|+|||.++
T Consensus 14 ~F~dIIG----Qe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 14 NFKQIIG----QELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred CHHHhcC----cHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 5666664 33332 23333333443 447889999999999887
No 428
>PRK04040 adenylate kinase; Provisional
Probab=23.99 E-value=36 Score=34.64 Aligned_cols=16 Identities=25% Similarity=0.381 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+.+|..|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4788999999999875
No 429
>PRK06851 hypothetical protein; Provisional
Probab=23.98 E-value=47 Score=37.71 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=0.0
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
....+.+.++.|.+-.++-.|..|+|||++|
T Consensus 17 Gf~s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 17 GFYSLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred chhhhhhhhccccceEEEEECCCCCCHHHHH
No 430
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=23.94 E-value=66 Score=39.12 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=53.0
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCc-------------chHHHHHHHH
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE-------------CTVADIFDYI 135 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------rav~dLF~~i 135 (758)
+.|....=|.+...|...|... +..+-+|.... +.+|.+||||++.+..+.. ..+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~-ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL 77 (652)
T PRK05298 3 KPFKLVSPYKPAGDQPQAIEEL----VEGIEAGEKHQ-TLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEF 77 (652)
T ss_pred CCcccccCCCCChHHHHHHHHH----HHhhhcCCCcE-EEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHH
Confidence 3566667788888998888763 44444554333 4789999999999854221 1244455555
Q ss_pred Hhc-cccceEEEeehhhhhhhhhh
Q 004378 136 HRH-EERAFVLKFSAMEIYNEAIR 158 (758)
Q Consensus 136 ~~~-~~~~~~V~vS~lEIYnE~V~ 158 (758)
... ++..+.+.+||+--|.-..|
T Consensus 78 ~~~~~~~~v~~f~s~~~~~~~~~~ 101 (652)
T PRK05298 78 KEFFPENAVEYFVSYYDYYQPEAY 101 (652)
T ss_pred HHhcCCCeEEEeCChhhccCcccc
Confidence 432 33346666787777765443
No 431
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=23.90 E-value=3.2e+02 Score=31.60 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVED 422 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~ 422 (758)
...++.+++++|..++..++..++.
T Consensus 383 ~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 383 KKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444443
No 432
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=23.85 E-value=32 Score=31.21 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=12.3
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999764
No 433
>PRK00736 hypothetical protein; Provisional
Probab=23.84 E-value=4.7e+02 Score=22.52 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 395 KDLQIQKMEREIRELTKQRDLAQSRVED 422 (758)
Q Consensus 395 ~~~~i~~le~ei~el~~q~~~~q~~~~~ 422 (758)
.+..+-+..++|..|++++..+..|+.+
T Consensus 24 Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 24 LSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555444444444444
No 434
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=23.82 E-value=69 Score=37.11 Aligned_cols=19 Identities=42% Similarity=0.438 Sum_probs=16.3
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
...|+..|.+|+|||+|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999964
No 435
>PTZ00014 myosin-A; Provisional
Probab=23.80 E-value=69 Score=40.13 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 86 VYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 86 Vy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
||.- +......++ .+.|-||+.-|.+|||||.+.
T Consensus 166 ifav-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTT-ARRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 5543 333444444 689999999999999999885
No 436
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.73 E-value=35 Score=41.89 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCCCCcc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTGITEC 126 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~r 126 (758)
.++.-+..+....++-||++|+|||+...|+..+
T Consensus 193 ~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 193 RTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 3454444555567789999999999998765433
No 437
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=23.72 E-value=53 Score=39.91 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=21.9
Q ss_pred hhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 83 TTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 83 Q~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
|.++++.+...+ -+| ..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~~al----~~~--~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCLTSL----RQK--RIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHHHHH----hcC--CeEEEEcCCCCcHHHHH
Confidence 667776644433 233 55788889999999764
No 438
>PRK14528 adenylate kinase; Provisional
Probab=23.70 E-value=43 Score=33.76 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
.|+..|+.|||||+.. +|+....+.+++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~ 38 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILRE 38 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHH
Confidence 3778999999998876 35544455555543
No 439
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=23.69 E-value=37 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=13.6
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.+.-.|+.|||||.+|-
T Consensus 27 i~~ivGpNGaGKSTll~ 43 (212)
T cd03274 27 FSAIVGPNGSGKSNVID 43 (212)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 34567999999999973
No 440
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=23.68 E-value=37 Score=39.11 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999875
No 441
>PLN02200 adenylate kinase family protein
Probab=23.65 E-value=43 Score=35.32 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=22.5
Q ss_pred eeEEeeccCCCCccccc------CCCCcchHHHHHH
Q 004378 104 SSIFAYGQTSSGKTYTM------TGITECTVADIFD 133 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM------~Gii~rav~dLF~ 133 (758)
..|+..|..|||||+-- +|+....+.+|+.
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR 79 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLR 79 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHH
Confidence 46899999999999874 4666666666665
No 442
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.55 E-value=47 Score=40.62 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.1
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCC-CeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
+||.|++. +.+ ++.|...+-.|. ...++-||+.|+|||.+.
T Consensus 13 tFddVIGQ----e~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVGQ----NHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 67777763 333 333333333453 457788999999999876
No 443
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=23.53 E-value=48 Score=38.90 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=28.7
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|+.+.+.+..-..+++. +.. +...+..|+-+|.+||||++..
T Consensus 185 ~~~~iig~s~~~~~~~~~-----i~~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKE-----IEV-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred cCCceeecCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCccHHHHH
Confidence 666666655444444443 222 3466889999999999998763
No 444
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=23.39 E-value=76 Score=25.32 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=17.1
Q ss_pred CcccccCCC------CcchHHHHHHHHHhcc
Q 004378 115 GKTYTMTGI------TECTVADIFDYIHRHE 139 (758)
Q Consensus 115 GKTyTM~Gi------i~rav~dLF~~i~~~~ 139 (758)
||||+.+|. -.-.-..+|+++..++
T Consensus 3 GktY~~~g~~F~~g~ee~V~kk~y~YL~~ne 33 (43)
T PF14553_consen 3 GKTYYAMGHRFLLGQEEKVSKKIYNYLNDNE 33 (43)
T ss_dssp -SEEEETTEEEEBT-EEEE-HHHHHHHHHST
T ss_pred CcEEEEeeeEEeCCCeeehhHHHHHHHhcCC
Confidence 899999873 3345678898888664
No 445
>PRK06762 hypothetical protein; Provisional
Probab=23.38 E-value=40 Score=32.72 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=12.4
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.|.-.|..|||||+.
T Consensus 4 li~i~G~~GsGKST~ 18 (166)
T PRK06762 4 LIIIRGNSGSGKTTI 18 (166)
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999874
No 446
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=23.33 E-value=39 Score=34.63 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..+.-.|++|||||..|-.
T Consensus 29 ~~~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 29 GLFLICGPTGAGKSTILDA 47 (213)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3566789999999998844
No 447
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=23.31 E-value=1.2e+02 Score=35.59 Aligned_cols=96 Identities=16% Similarity=0.266 Sum_probs=57.4
Q ss_pred cCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhc-ccCCCC--------CCCcc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRD-LLSTDN--------TPLRL 170 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~D-LL~~~~--------~~l~i 170 (758)
..-++.|+-.|.|||||-- +...........+.. .|.+.|-.|-.+.+-- |+...+ ...-.
T Consensus 161 A~s~a~VLI~GESGtGKEl---------vAr~IH~~S~R~~~P-FVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~ 230 (464)
T COG2204 161 APSDASVLITGESGTGKEL---------VARAIHQASPRAKGP-FIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGR 230 (464)
T ss_pred hCCCCCEEEECCCCCcHHH---------HHHHHHhhCcccCCC-ceeeecccCCHHHHHHHhhcccccCcCCcccccCcc
Confidence 5789999999999999932 222222222222333 3666666666655544 443221 12224
Q ss_pred ccCCCCc-EEEcccEEEEecCHHHHHHHHHHhhhhc
Q 004378 171 LDDPEKG-VVVEKVTEEILKDWNHLKELLSICEAQR 205 (758)
Q Consensus 171 ~ed~~~g-v~V~gLte~~V~S~ee~~~lL~~g~~~R 205 (758)
.+..++| .++..+.+.+..--.-++.+|+.+.-.|
T Consensus 231 fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~r 266 (464)
T COG2204 231 FEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFER 266 (464)
T ss_pred eeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEe
Confidence 4555555 5677787777776677778887665444
No 448
>smart00338 BRLZ basic region leucin zipper.
Probab=23.29 E-value=2.4e+02 Score=23.51 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
.+..|+.++..|..+.+.+..++..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 449
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=23.28 E-value=35 Score=38.30 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=13.1
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
+.-.|++|+|||++|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999998
No 450
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=23.18 E-value=51 Score=40.74 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=20.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.|..++.+ +..++-.|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 44455655 34567889999999999855
No 451
>PRK00279 adk adenylate kinase; Reviewed
Probab=23.17 E-value=38 Score=34.66 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=21.8
Q ss_pred eEEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
-|+.+|..|||||..- +|+....+.+++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~ 37 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHH
Confidence 3788999999999754 46666666566653
No 452
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=23.11 E-value=35 Score=38.47 Aligned_cols=13 Identities=31% Similarity=0.491 Sum_probs=11.7
Q ss_pred eeccCCCCccccc
Q 004378 108 AYGQTSSGKTYTM 120 (758)
Q Consensus 108 AYGqTGSGKTyTM 120 (758)
-.|++|||||++|
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 5699999999987
No 453
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=23.03 E-value=68 Score=37.04 Aligned_cols=28 Identities=32% Similarity=0.322 Sum_probs=24.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.-++.+-+|....-|..|.-||||||.+
T Consensus 39 ~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 39 RDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 3457788999999999999999999986
No 454
>PRK00736 hypothetical protein; Provisional
Probab=23.02 E-value=4.9e+02 Score=22.42 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 004378 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQ 431 (758)
Q Consensus 395 ~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~~ 431 (758)
.+.-|+.|.+.+-+.+++++.++.+++.|...+....
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556788888888888888888888888877776543
No 455
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.00 E-value=2.7e+02 Score=23.24 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 393 ~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
..+...++.|+..+..|..+.+.+..++..|.+.+
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~ 56 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEI 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=64 Score=36.37 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.0
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
|-.|+..|+.|+|||.-.-|
T Consensus 177 NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeEEEEeCCCCCChhHHHHH
Confidence 44578899999999988744
No 457
>PRK03839 putative kinase; Provisional
Probab=22.91 E-value=38 Score=33.43 Aligned_cols=15 Identities=33% Similarity=0.315 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+-.|..|||||+.-
T Consensus 3 I~l~G~pGsGKsT~~ 17 (180)
T PRK03839 3 IAITGTPGVGKTTVS 17 (180)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999853
No 458
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=22.85 E-value=64 Score=35.06 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=21.7
Q ss_pred HHHHHHhhcCC---CeeEEeeccCCCCcccccC
Q 004378 92 KEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 92 ~plV~~vl~G~---N~tIfAYGqTGSGKTyTM~ 121 (758)
.+-++.+|.|- ...+.-||.+|||||..+.
T Consensus 81 ~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 81 SKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 34566677643 5567899999999998753
No 459
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=22.79 E-value=1.6e+02 Score=32.13 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=55.0
Q ss_pred HHhhcCCCee-EEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcc------cCCCCCCC
Q 004378 96 LSVVSGINSS-IFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDL------LSTDNTPL 168 (758)
Q Consensus 96 ~~vl~G~N~t-IfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DL------L~~~~~~l 168 (758)
..+++|+-+- |+.||..|+||+.. +..++.......- ..+||-.+.+.+| |.......
T Consensus 77 ~~F~~G~pANnVLLwGaRGtGKSSL--------VKA~~~e~~~~gl-------rLVEV~k~dl~~Lp~l~~~Lr~~~~kF 141 (287)
T COG2607 77 EQFAEGLPANNVLLWGARGTGKSSL--------VKALLNEYADEGL-------RLVEVDKEDLATLPDLVELLRARPEKF 141 (287)
T ss_pred HHHHcCCcccceEEecCCCCChHHH--------HHHHHHHHHhcCC-------eEEEEcHHHHhhHHHHHHHHhcCCceE
Confidence 3677898875 89999999999876 4445554443322 1466666655444 32211111
Q ss_pred ccccCCCCcEEEcccEEEEe-cCHHHHHHHHHHhhhhcccccccccCCCCCceeEE
Q 004378 169 RLLDDPEKGVVVEKVTEEIL-KDWNHLKELLSICEAQRRIGETLLNEKSSRSHQII 223 (758)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V-~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~If 223 (758)
. +++.+|+-..= .++..+..+|.-|...|- ..--.-++|.|-|.+=
T Consensus 142 I--------lFcDDLSFe~gd~~yK~LKs~LeG~ve~rP-~NVl~YATSNRRHLl~ 188 (287)
T COG2607 142 I--------LFCDDLSFEEGDDAYKALKSALEGGVEGRP-ANVLFYATSNRRHLLP 188 (287)
T ss_pred E--------EEecCCCCCCCchHHHHHHHHhcCCcccCC-CeEEEEEecCCccccc
Confidence 1 22334432221 233444445544444442 3333446677888774
No 460
>PRK14530 adenylate kinase; Provisional
Probab=22.78 E-value=39 Score=34.64 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=19.4
Q ss_pred eEEeeccCCCCccccc------CCCCcchHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM------TGITECTVADIFD 133 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~Gii~rav~dLF~ 133 (758)
.|+-.|.+|||||+.. +|+....+.+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHH
Confidence 4777999999999875 3544334444444
No 461
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=22.78 E-value=32 Score=42.73 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
+-.+..|+||||||+.|.-
T Consensus 442 gn~~I~G~tGsGKS~l~~~ 460 (811)
T PRK13873 442 GHTLVVGPTGAGKSVLLAL 460 (811)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3456789999999999843
No 462
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=22.73 E-value=42 Score=37.03 Aligned_cols=42 Identities=24% Similarity=0.522 Sum_probs=28.1
Q ss_pred eEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccC
Q 004378 105 SIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLS 162 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~ 162 (758)
.|+-.|+||||||-.-.- +.+. ..-.|.+=.++||.+ .|...
T Consensus 6 ii~I~GpTasGKS~LAl~------------LA~~--~~eIIsaDS~QvYr~--ldIgT 47 (300)
T PRK14729 6 IVFIFGPTAVGKSNILFH------------FPKG--KAEIINVDSIQVYKE--FDIAS 47 (300)
T ss_pred EEEEECCCccCHHHHHHH------------HHHh--CCcEEeccHHHHHCC--Cceec
Confidence 588899999999974221 1112 124788888999976 45553
No 463
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=22.72 E-value=38 Score=32.81 Aligned_cols=15 Identities=33% Similarity=0.483 Sum_probs=12.4
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|+..|.+|||||+..
T Consensus 2 i~i~G~~GsGKSTla 16 (149)
T cd02027 2 IWLTGLSGSGKSTIA 16 (149)
T ss_pred EEEEcCCCCCHHHHH
Confidence 677899999998753
No 464
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=22.70 E-value=52 Score=41.98 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=21.0
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|..++.+.+.+ +..|..|+||||+|
T Consensus 353 ~Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 353 DALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 3566777776654 58899999999987
No 465
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=22.70 E-value=35 Score=37.05 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHhhcC---CCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSG---INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G---~N~tIfAYGqTGSGKTyTM 120 (758)
.++-.+|.| .-..+|.||..|+|||..+
T Consensus 63 ~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 63 RVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 344444544 4457999999999998775
No 466
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.68 E-value=1.7e+02 Score=34.31 Aligned_cols=30 Identities=23% Similarity=0.319 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 395 ~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
...++++|+.++.+++.+++.++.|++.+.
T Consensus 114 ~~~~~~ql~~~~~~~~~~l~~l~~~l~~~~ 143 (472)
T TIGR03752 114 LTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344566667777777777777777666543
No 467
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.58 E-value=2.2e+02 Score=26.65 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
..+++++++.++.++ .+.+.+.+.|++++..|+...+.++.....-+-++..+
T Consensus 29 ~~~l~~q~~~~~~e~----------------~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~g 81 (105)
T PRK00888 29 YWRVNDQVAAQQQTN----------------AKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPG 81 (105)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCC
No 468
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=22.54 E-value=58 Score=38.90 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=24.8
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcC-CCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTM 120 (758)
+||.|.+ |+.|... +...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~~viG----q~~v~~~----L~~~i~~~~~~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 14 TFEDVVG----QEHITKT----LKNAIKQGKISHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred cHHhccC----cHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 5666665 4554443 22223334 3445667999999999876
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=22.51 E-value=38 Score=32.50 Aligned_cols=14 Identities=29% Similarity=0.392 Sum_probs=11.2
Q ss_pred EEeeccCCCCcccc
Q 004378 106 IFAYGQTSSGKTYT 119 (758)
Q Consensus 106 IfAYGqTGSGKTyT 119 (758)
|.-.|+||||||..
T Consensus 2 i~i~GpsGsGKstl 15 (137)
T cd00071 2 IVLSGPSGVGKSTL 15 (137)
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999964
No 470
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=22.51 E-value=50 Score=33.18 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.-+...+.| -+++-.|++|.|||..+-.
T Consensus 27 ~~l~~~l~~--k~~vl~G~SGvGKSSLiN~ 54 (161)
T PF03193_consen 27 EELKELLKG--KTSVLLGQSGVGKSSLINA 54 (161)
T ss_dssp HHHHHHHTT--SEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHhcC--CEEEEECCCCCCHHHHHHH
Confidence 344566777 4556679999999987543
No 471
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=22.48 E-value=37 Score=42.46 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.4
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
|.-++..|.||||||++|.-
T Consensus 449 N~N~~I~G~sGsGKS~l~k~ 468 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQP 468 (844)
T ss_pred cccEEEEcCCCCCHHHHHHH
Confidence 44578889999999999853
No 472
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=22.48 E-value=43 Score=34.35 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=18.9
Q ss_pred HHHhhcC---CCeeEEeeccCCCCcccc
Q 004378 95 ALSVVSG---INSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 95 V~~vl~G---~N~tIfAYGqTGSGKTyT 119 (758)
++.++.| .+..++.+|++|||||.-
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l 35 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTL 35 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHH
Confidence 4556633 367899999999999865
No 473
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=22.46 E-value=3.9e+02 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.375 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~~~ 426 (758)
.++.||+.+.+.++++..+++++.+..+.
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~eErk~ 517 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQEERKA 517 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999998888888765543
No 474
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.46 E-value=2.5e+02 Score=27.55 Aligned_cols=6 Identities=33% Similarity=0.684 Sum_probs=3.5
Q ss_pred CCcccC
Q 004378 293 NGHINY 298 (758)
Q Consensus 293 ~~hIPY 298 (758)
..|+||
T Consensus 33 ~Ah~Py 38 (131)
T PF04859_consen 33 QAHSPY 38 (131)
T ss_pred HhcCCC
Confidence 346666
No 475
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=22.35 E-value=40 Score=34.53 Aligned_cols=16 Identities=31% Similarity=0.439 Sum_probs=14.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
+++-+|++|+|||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 7788999999999887
No 476
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=22.33 E-value=5.3e+02 Score=25.26 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhcccccceecc--ccCHHHHHHHHHHHHHHHHHHhcCCCCCCC--chhHHHHHHHHHHHHHHHHHH
Q 004378 330 VEQTRNTLLFACCAKEVTTKAQVNV--VMSDKALVKHLQKELARLESELRSPAPASS--TCDYVALLRKKDLQIQKMERE 405 (758)
Q Consensus 330 ~eETlsTLrFA~rAk~Ikn~~~vN~--~~s~~~li~~Lq~Ei~~L~~eL~~~~~~~~--~~~~~~~l~~~~~~i~~le~e 405 (758)
+-.|+++|+.|.---+---.|--.. ...|.+++.+|++ +..||...+......+ .....+.+.+....|+..+..
T Consensus 17 lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~~-Ls~LK~~y~~~~~~~~~~~~~l~a~~~e~qsli~~yE~~ 95 (131)
T PF04859_consen 17 LFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELRR-LSELKRRYRKKQSDPSPQVARLAAEIQEQQSLIKTYEIV 95 (131)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCccccccccchHHHHHHHHHHHHH
Confidence 4567777776643322222221111 1235566777764 6666665544333221 111222233333444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 004378 406 IRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 406 i~el~~q~~~~q~~~~~l~~~~~ 428 (758)
+++|+.+.+...+++..|.+.+.
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~ 118 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLD 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555444444444444443
No 477
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.23 E-value=53 Score=38.80 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=25.4
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcC-CCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTM 120 (758)
+||.|.+ |+.|-.. |...+-.| ..-.++-||+.|+|||.+.
T Consensus 14 ~f~divG----q~~v~~~----L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 14 CFQEVIG----QAPVVRA----LSNALDQQYLHHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CHHHhcC----CHHHHHH----HHHHHHhCCCCeeEEEECCCCCCHHHHH
Confidence 5666665 4444332 33333333 3456889999999999765
No 478
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=22.22 E-value=43 Score=36.30 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=16.7
Q ss_pred eeEEeeccCCCCcccccCCC
Q 004378 104 SSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~Gi 123 (758)
-.+.-+|++|+|||+++..+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l 95 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKM 95 (270)
T ss_pred CEEEEECCCCCcHHHHHHHH
Confidence 57888999999999987553
No 479
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=22.21 E-value=38 Score=35.96 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=11.6
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 567899999999863
No 480
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=22.11 E-value=66 Score=32.03 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=18.4
Q ss_pred HhhcC-CCeeEEeeccCCCCccccc
Q 004378 97 SVVSG-INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G-~N~tIfAYGqTGSGKTyTM 120 (758)
.+-.| ...+++-||+.|+|||..+
T Consensus 7 ~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 7 ALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHH
Confidence 34455 4567888999999999876
No 481
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=22.10 E-value=5.3e+02 Score=23.44 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 358 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (758)
Q Consensus 358 ~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l 423 (758)
..+....|..-|..|+..+...-. ......+.+.+|+.|......|..+++.+..+...|
T Consensus 6 le~al~rL~~aid~LE~~v~~r~~------~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 6 LEAALTRLEAAIDRLEKAVDRRLE------RDRKRDELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------hhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 345567777777777776532211 111224455667777777777777777776665444
No 482
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=22.07 E-value=61 Score=38.30 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.0
Q ss_pred hhcCC-CeeEEeeccCCCCccccc
Q 004378 98 VVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 98 vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
+..|. ...++-||+.|+|||++.
T Consensus 37 i~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 37 ILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 44454 357889999999999986
No 483
>PRK14527 adenylate kinase; Provisional
Probab=22.05 E-value=44 Score=33.47 Aligned_cols=30 Identities=20% Similarity=0.393 Sum_probs=20.7
Q ss_pred eeEEeeccCCCCccccc------CCCCcchHHHHHH
Q 004378 104 SSIFAYGQTSSGKTYTM------TGITECTVADIFD 133 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM------~Gii~rav~dLF~ 133 (758)
-.|+.+|.+|||||+.. .|+....+.+++.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r 42 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILR 42 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46889999999998865 2555444545543
No 484
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=22.00 E-value=43 Score=34.61 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.8
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.+.-.|+.|||||..|-
T Consensus 25 ~~~i~GpNGsGKStll~ 41 (243)
T cd03272 25 HNVVVGRNGSGKSNFFA 41 (243)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 44467999999999983
No 485
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=21.98 E-value=41 Score=40.11 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=15.8
Q ss_pred eeEEeeccCCCCcccccCCC
Q 004378 104 SSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~Gi 123 (758)
..|.-.|++|+|||+|+..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakL 370 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKL 370 (559)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 45666699999999998553
No 486
>smart00338 BRLZ basic region leucin zipper.
Probab=21.97 E-value=3.3e+02 Score=22.72 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 391 LLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 391 ~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
.+.+.+.+++.|+.++.+|..+.+.+..++..|...+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566778888888888888888888887776554
No 487
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=21.91 E-value=30 Score=39.18 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=0.0
Q ss_pred EEeeccCCCCcccccCC
Q 004378 106 IFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~G 122 (758)
+++||..|||||+++..
T Consensus 5 ~v~~GGrGS~KS~~~a~ 21 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQ 21 (387)
T ss_dssp -----------------
T ss_pred EEEECCCCchHHHHHHH
Confidence 57899999999999866
No 488
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=21.89 E-value=37 Score=42.14 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=15.7
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
.+-.+.+|+||||||+++.
T Consensus 426 ~g~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMT 444 (789)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3457889999999999873
No 489
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=21.88 E-value=99 Score=38.41 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=39.4
Q ss_pred ChhHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccc
Q 004378 82 STTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEE 140 (758)
Q Consensus 82 sQ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~ 140 (758)
-|.+-|+-.-+.|+..+. .|.++||+|-.+ |+|||+-+ +.-|+.++...++
T Consensus 242 HQ~EG~~FL~knl~g~~~~~~~~GCImAd~~-GlGKTlq~-------IsflwtlLrq~P~ 293 (776)
T KOG0390|consen 242 HQREGFEFLYKNLAGLIRPKNSGGCIMADEP-GLGKTLQC-------ISFIWTLLRQFPQ 293 (776)
T ss_pred hHHHHHHHHHhhhhcccccCCCCceEeeCCC-CcchHHHH-------HHHHHHHHHhCcC
Confidence 477888777777776666 499999999875 99999875 5557777777665
No 490
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=21.86 E-value=38 Score=34.43 Aligned_cols=17 Identities=35% Similarity=0.194 Sum_probs=13.5
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|.-.|.+|||||+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35677899999999754
No 491
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=21.80 E-value=80 Score=39.70 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=15.1
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
++++-+|+||+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999985
No 492
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=21.72 E-value=61 Score=34.22 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.3
Q ss_pred CCeeEEeeccCCCCccccc
Q 004378 102 INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (758)
....++.||..|||||.-.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~ 40 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFA 40 (260)
T ss_pred CCcEEEEEcCCCCcHHHHH
Confidence 3567889999999998653
No 493
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=21.69 E-value=1e+02 Score=34.02 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=27.6
Q ss_pred CeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhccccceEEEe
Q 004378 103 NSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEERAFVLKF 147 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~~~~V~v 147 (758)
-+||+..|-.|||||.- ++.|..++.......|.|.+
T Consensus 19 p~~ilVvGMAGSGKTTF--------~QrL~~hl~~~~~ppYviNL 55 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTF--------MQRLNSHLHAKKTPPYVINL 55 (366)
T ss_pred CcEEEEEecCCCCchhH--------HHHHHHHHhhccCCCeEEeC
Confidence 56899999999999975 46677777666655666554
No 494
>PRK10884 SH3 domain-containing protein; Provisional
Probab=21.65 E-value=4.3e+02 Score=27.69 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
..+.+.+.++|.+++..++.+++.++.+++++.+
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555666677777777777766666665553
No 495
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=21.63 E-value=66 Score=41.33 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=17.4
Q ss_pred eeEEeeccCCCCccccc-------CCCCcc
Q 004378 104 SSIFAYGQTSSGKTYTM-------TGITEC 126 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-------~Gii~r 126 (758)
+.+.-+|+||||||..+ +|-.|+
T Consensus 31 ~l~~I~G~tGaGKStildai~~aLyg~~~r 60 (1047)
T PRK10246 31 GLFAITGPTGAGKTTLLDAICLALYHETPR 60 (1047)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcCCCCC
Confidence 45567899999999865 666665
No 496
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=21.60 E-value=57 Score=37.45 Aligned_cols=17 Identities=35% Similarity=0.604 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 56889999999999987
No 497
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.58 E-value=3.4e+02 Score=31.76 Aligned_cols=63 Identities=16% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 362 VKHLQKELARLESELRSPAPASSTCDY-VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~~-~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
..+++..++++.++|.... +. ..+.+.++.-+.++++..+.+..++...+.++++|..++.+-
T Consensus 384 ~~q~q~k~~k~~kel~~~~------E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEER------EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4555666666666654221 11 122222333334444444444455555555555555555443
No 498
>PRK13531 regulatory ATPase RavA; Provisional
Probab=21.50 E-value=63 Score=38.13 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=21.1
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++.-++..++.|.+ |+-+|++|+|||+..
T Consensus 28 vI~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 28 AIRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 45555556666655 577999999999875
No 499
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.37 E-value=5.3e+02 Score=22.78 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 365 LQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVE 421 (758)
Q Consensus 365 Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~ 421 (758)
|+-.|-.|+..|....+.. ..+.....-+...++..|.++++++++.+..++..++
T Consensus 19 LKLrI~fLee~l~~~~~~~-~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 19 LKLRIYFLEERLQKLGPES-IEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 500
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.34 E-value=56 Score=39.30 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+..++. +...+..|..|||||||+
T Consensus 151 k~A~~~al~--~~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 151 KVAVALALK--SNFSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHHHHhh--CCeEEEEcCCCCCHHHHH
Done!