Query 004378
Match_columns 758
No_of_seqs 366 out of 1994
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:19:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y65_A Kinesin, kinesin heavy 100.0 9.1E-89 3.1E-93 742.9 23.2 342 19-374 7-361 (365)
2 3b6u_A Kinesin-like protein KI 100.0 3E-88 1E-92 739.9 25.1 345 19-366 17-372 (372)
3 1goj_A Kinesin, kinesin heavy 100.0 9.7E-88 3.3E-92 732.7 21.9 330 20-359 3-343 (355)
4 3bfn_A Kinesin-like protein KI 100.0 1.4E-87 4.9E-92 737.2 21.5 338 17-361 15-362 (388)
5 1t5c_A CENP-E protein, centrom 100.0 6.7E-87 2.3E-91 724.6 23.7 330 21-359 2-341 (349)
6 3cob_A Kinesin heavy chain-lik 100.0 2.6E-86 8.9E-91 724.2 25.7 339 22-374 4-352 (369)
7 2vvg_A Kinesin-2; motor protei 100.0 1.9E-86 6.6E-91 721.0 24.2 332 22-358 3-347 (350)
8 1x88_A Kinesin-like protein KI 100.0 2.9E-86 9.8E-91 722.3 20.1 331 20-354 5-358 (359)
9 1bg2_A Kinesin; motor protein, 100.0 1.2E-85 4.2E-90 708.7 23.1 312 20-346 4-325 (325)
10 2zfi_A Kinesin-like protein KI 100.0 1.5E-85 5.3E-90 718.2 24.1 330 22-354 3-362 (366)
11 2owm_A Nckin3-434, related to 100.0 3.4E-85 1.2E-89 730.4 26.0 333 20-355 35-422 (443)
12 2wbe_C Bipolar kinesin KRP-130 100.0 2E-85 6.9E-90 718.6 23.0 334 18-357 18-372 (373)
13 4a14_A Kinesin, kinesin-like p 100.0 9.2E-85 3.2E-89 707.1 25.3 322 15-344 3-344 (344)
14 3lre_A Kinesin-like protein KI 100.0 9.9E-85 3.4E-89 709.3 25.1 323 21-346 8-355 (355)
15 3gbj_A KIF13B protein; kinesin 100.0 2.7E-83 9.2E-88 697.7 22.5 322 23-345 1-349 (354)
16 2heh_A KIF2C protein; kinesin, 100.0 7E-83 2.4E-87 699.9 22.9 319 19-349 47-385 (387)
17 2h58_A Kinesin-like protein KI 100.0 2.1E-82 7.1E-87 684.9 24.6 314 22-347 3-329 (330)
18 3nwn_A Kinesin-like protein KI 100.0 8E-83 2.8E-87 694.7 21.4 318 19-346 20-359 (359)
19 1ry6_A Internal kinesin; kines 100.0 1.2E-82 4E-87 693.7 21.9 322 24-355 1-340 (360)
20 3t0q_A AGR253WP; kinesin, alph 100.0 2.1E-82 7.2E-87 689.7 22.0 321 22-350 4-348 (349)
21 1v8k_A Kinesin-like protein KI 100.0 2.2E-82 7.5E-87 700.0 22.2 320 20-351 68-407 (410)
22 2rep_A Kinesin-like protein KI 100.0 4.5E-82 1.5E-86 692.3 24.1 319 21-346 20-376 (376)
23 1f9v_A Kinesin-like protein KA 100.0 2.2E-82 7.6E-87 688.9 20.2 320 22-351 2-346 (347)
24 2nr8_A Kinesin-like protein KI 100.0 8.3E-82 2.9E-86 686.5 21.1 319 18-346 18-358 (358)
25 3u06_A Protein claret segregat 100.0 3.3E-80 1.1E-84 684.7 25.2 323 22-356 58-393 (412)
26 3dc4_A Kinesin-like protein NO 100.0 2.9E-80 9.8E-85 671.2 23.7 310 14-351 13-340 (344)
27 4etp_A Kinesin-like protein KA 100.0 3.6E-80 1.2E-84 683.4 22.2 321 22-351 58-402 (403)
28 4h1g_A Maltose binding protein 100.0 2.1E-75 7.2E-80 687.0 23.6 320 21-347 372-712 (715)
29 2kin_B Kinesin; motor protein, 100.0 4E-31 1.4E-35 238.9 6.0 99 271-369 1-99 (100)
30 3kin_B Kinesin heavy chain; mo 100.0 4.3E-29 1.5E-33 232.0 9.7 98 275-372 1-98 (117)
31 2o0a_A S.cerevisiae chromosome 99.9 7.1E-24 2.4E-28 221.4 3.5 264 22-352 23-295 (298)
32 3ec2_A DNA replication protein 93.9 0.017 5.9E-07 55.1 1.6 51 70-121 6-56 (180)
33 2w58_A DNAI, primosome compone 92.4 0.055 1.9E-06 52.4 2.6 51 70-121 21-72 (202)
34 2qgz_A Helicase loader, putati 91.0 0.086 2.9E-06 55.7 2.4 51 71-122 121-171 (308)
35 3t15_A Ribulose bisphosphate c 85.6 0.37 1.3E-05 50.2 2.9 48 73-120 2-53 (293)
36 1jbk_A CLPB protein; beta barr 84.9 0.47 1.6E-05 44.0 2.9 31 91-121 31-61 (195)
37 2r62_A Cell division protease 84.4 0.48 1.6E-05 47.8 2.9 51 70-121 7-62 (268)
38 4b4t_K 26S protease regulatory 83.1 0.89 3.1E-05 50.5 4.7 50 71-120 169-223 (428)
39 2bjv_A PSP operon transcriptio 83.1 0.41 1.4E-05 48.4 1.8 45 70-120 2-46 (265)
40 1l8q_A Chromosomal replication 82.8 0.77 2.6E-05 47.9 3.8 51 69-122 6-56 (324)
41 4b4t_M 26S protease regulatory 82.5 0.55 1.9E-05 52.4 2.7 51 70-120 177-232 (434)
42 2p65_A Hypothetical protein PF 82.3 0.53 1.8E-05 43.7 2.1 31 91-121 31-61 (187)
43 3bos_A Putative DNA replicatio 82.3 0.85 2.9E-05 44.3 3.7 46 70-121 24-70 (242)
44 1g8p_A Magnesium-chelatase 38 80.9 0.53 1.8E-05 49.1 1.8 44 69-120 19-62 (350)
45 3h4m_A Proteasome-activating n 80.8 0.6 2E-05 47.4 2.1 51 70-120 13-68 (285)
46 1d2n_A N-ethylmaleimide-sensit 80.4 0.88 3E-05 46.2 3.2 21 100-120 61-81 (272)
47 3cf0_A Transitional endoplasmi 80.1 0.65 2.2E-05 48.3 2.1 51 70-120 11-66 (301)
48 3te6_A Regulatory protein SIR3 79.8 0.58 2E-05 50.0 1.6 52 94-153 36-92 (318)
49 1ixz_A ATP-dependent metallopr 79.2 0.86 2.9E-05 45.7 2.6 51 70-121 12-67 (254)
50 2z4s_A Chromosomal replication 77.3 1.3 4.6E-05 48.9 3.6 52 67-122 98-149 (440)
51 3b9p_A CG5977-PA, isoform A; A 76.0 0.83 2.8E-05 46.8 1.4 51 70-120 17-71 (297)
52 4b4t_J 26S protease regulatory 75.8 1.2 4.2E-05 49.1 2.8 50 71-120 145-199 (405)
53 1qde_A EIF4A, translation init 75.5 1.2 4.3E-05 43.3 2.5 24 94-119 44-67 (224)
54 2kjq_A DNAA-related protein; s 75.4 1.2 4.1E-05 41.8 2.2 19 104-122 37-55 (149)
55 3d8b_A Fidgetin-like protein 1 75.2 0.78 2.7E-05 49.0 1.0 50 71-120 81-134 (357)
56 1vec_A ATP-dependent RNA helic 75.2 1.4 4.7E-05 42.3 2.7 25 94-120 33-57 (206)
57 2chg_A Replication factor C sm 74.6 1.5 5E-05 41.5 2.7 21 100-120 35-55 (226)
58 2gxq_A Heat resistant RNA depe 74.5 1.4 4.8E-05 42.1 2.5 24 95-120 32-55 (207)
59 4etp_B Spindle POLE BODY-assoc 74.1 12 0.0004 40.1 9.5 119 22-164 58-183 (333)
60 2qz4_A Paraplegin; AAA+, SPG7, 73.8 0.7 2.4E-05 46.0 0.1 20 102-121 38-57 (262)
61 2v1u_A Cell division control p 73.7 1.1 3.6E-05 47.0 1.5 21 100-120 41-61 (387)
62 4b4t_H 26S protease regulatory 73.5 0.86 2.9E-05 51.3 0.8 50 71-120 206-260 (467)
63 1iy2_A ATP-dependent metallopr 73.4 0.64 2.2E-05 47.5 -0.3 51 70-121 36-91 (278)
64 4b4t_L 26S protease subunit RP 72.7 0.93 3.2E-05 50.6 0.8 51 70-120 177-232 (437)
65 2qp9_X Vacuolar protein sortin 71.9 2.4 8.1E-05 45.3 3.8 51 70-120 47-101 (355)
66 3dkp_A Probable ATP-dependent 71.5 1.8 6.1E-05 42.9 2.5 24 94-119 59-82 (245)
67 1xwi_A SKD1 protein; VPS4B, AA 71.4 1.2 4.2E-05 46.9 1.4 50 71-120 9-62 (322)
68 1lv7_A FTSH; alpha/beta domain 71.0 0.98 3.3E-05 45.3 0.5 50 70-120 8-62 (257)
69 1sxj_D Activator 1 41 kDa subu 70.9 2 7E-05 44.5 2.9 42 72-121 35-76 (353)
70 4b4t_I 26S protease regulatory 70.5 2.1 7.1E-05 47.8 2.9 50 71-120 179-233 (437)
71 3bor_A Human initiation factor 70.4 1.2 4E-05 44.3 0.9 25 94-120 60-84 (237)
72 1fnn_A CDC6P, cell division co 70.3 3.3 0.00011 43.4 4.4 46 70-120 13-61 (389)
73 2pl3_A Probable ATP-dependent 69.4 2.1 7.3E-05 42.1 2.5 25 94-120 55-79 (236)
74 1sxj_C Activator 1 40 kDa subu 69.1 2.4 8.1E-05 44.6 3.0 42 72-121 23-64 (340)
75 1p9r_A General secretion pathw 69.0 2.2 7.4E-05 47.2 2.7 29 93-121 157-185 (418)
76 1t6n_A Probable ATP-dependent 69.0 2.1 7.2E-05 41.6 2.4 25 94-120 44-68 (220)
77 3uk6_A RUVB-like 2; hexameric 68.9 2.6 8.9E-05 44.2 3.2 46 70-120 40-87 (368)
78 2jee_A YIIU; FTSZ, septum, coi 68.6 37 0.0013 29.3 9.7 59 361-428 21-79 (81)
79 3nmd_A CGMP dependent protein 67.4 7.1 0.00024 33.0 4.8 28 394-421 37-64 (72)
80 3b6e_A Interferon-induced heli 67.2 1.2 4.2E-05 42.6 0.3 23 96-120 43-65 (216)
81 3iuy_A Probable ATP-dependent 66.8 2.5 8.7E-05 41.3 2.5 25 94-120 50-74 (228)
82 1wrb_A DJVLGB; RNA helicase, D 66.8 2.4 8.2E-05 42.2 2.3 25 94-120 53-77 (253)
83 3ly5_A ATP-dependent RNA helic 66.7 1.9 6.4E-05 43.8 1.5 25 93-119 83-107 (262)
84 3eie_A Vacuolar protein sortin 66.7 1.7 5.8E-05 45.5 1.2 51 70-120 14-68 (322)
85 3jvv_A Twitching mobility prot 66.4 2.4 8.3E-05 45.7 2.4 27 94-120 114-140 (356)
86 2c9o_A RUVB-like 1; hexameric 66.0 4.3 0.00015 44.8 4.3 46 70-120 33-80 (456)
87 2x8a_A Nuclear valosin-contain 65.9 0.92 3.1E-05 46.9 -1.0 51 70-120 6-61 (274)
88 3vfd_A Spastin; ATPase, microt 65.9 1.9 6.4E-05 46.4 1.4 51 70-120 111-165 (389)
89 3syl_A Protein CBBX; photosynt 65.6 2.4 8.3E-05 43.3 2.1 20 101-120 65-84 (309)
90 3fmo_B ATP-dependent RNA helic 65.1 2.7 9.4E-05 43.7 2.4 27 94-120 122-148 (300)
91 3eiq_A Eukaryotic initiation f 64.8 2.8 9.6E-05 44.3 2.5 26 93-120 69-94 (414)
92 3fe2_A Probable ATP-dependent 63.9 2.8 9.7E-05 41.6 2.2 25 94-120 59-83 (242)
93 3llm_A ATP-dependent RNA helic 63.9 2.7 9.2E-05 41.7 2.0 27 92-120 67-93 (235)
94 3nmd_A CGMP dependent protein 63.9 20 0.00069 30.3 6.9 39 389-427 25-63 (72)
95 2oxc_A Probable ATP-dependent 63.7 3.2 0.00011 40.9 2.5 24 95-120 55-78 (230)
96 3ber_A Probable ATP-dependent 62.7 3.4 0.00012 41.5 2.5 25 94-120 73-97 (249)
97 2qby_B CDC6 homolog 3, cell di 62.6 3.7 0.00012 43.1 2.9 47 69-120 15-62 (384)
98 3i00_A HIP-I, huntingtin-inter 62.6 29 0.00099 32.0 8.5 66 359-429 14-79 (120)
99 2qby_A CDC6 homolog 1, cell di 61.3 2.9 0.0001 43.5 1.8 20 101-120 43-62 (386)
100 3hu3_A Transitional endoplasmi 61.2 3.3 0.00011 46.6 2.3 50 71-120 201-255 (489)
101 3co5_A Putative two-component 61.2 4.4 0.00015 37.2 2.8 23 102-124 26-48 (143)
102 2zan_A Vacuolar protein sortin 60.4 2.3 7.8E-05 47.0 0.8 51 70-120 130-184 (444)
103 1q0u_A Bstdead; DEAD protein, 60.3 2.4 8.3E-05 41.2 0.9 24 95-120 35-58 (219)
104 1njg_A DNA polymerase III subu 59.9 4.4 0.00015 38.5 2.6 17 104-120 46-62 (250)
105 2eyu_A Twitching motility prot 59.8 3.7 0.00013 42.2 2.2 20 101-120 23-42 (261)
106 3hnw_A Uncharacterized protein 59.8 50 0.0017 31.0 9.8 37 392-428 98-134 (138)
107 2j0s_A ATP-dependent RNA helic 59.7 3.7 0.00013 43.5 2.3 25 94-120 67-91 (410)
108 3fmp_B ATP-dependent RNA helic 59.3 3.9 0.00013 44.8 2.4 27 93-119 121-147 (479)
109 1ofh_A ATP-dependent HSL prote 59.1 4.2 0.00014 41.2 2.5 18 103-120 50-67 (310)
110 1u0j_A DNA replication protein 59.0 4.6 0.00016 42.1 2.8 31 91-121 89-122 (267)
111 3fht_A ATP-dependent RNA helic 59.0 4.2 0.00014 42.8 2.5 27 94-120 55-81 (412)
112 3pey_A ATP-dependent RNA helic 58.7 4.1 0.00014 42.4 2.3 27 94-120 35-61 (395)
113 1s2m_A Putative ATP-dependent 56.7 4.3 0.00015 42.8 2.1 25 94-120 51-75 (400)
114 2z0m_A 337AA long hypothetical 56.3 4.7 0.00016 41.0 2.3 24 95-120 25-48 (337)
115 1iqp_A RFCS; clamp loader, ext 56.3 5.2 0.00018 40.8 2.6 42 72-121 23-64 (327)
116 3pvs_A Replication-associated 56.3 5.3 0.00018 44.3 2.9 44 72-120 24-67 (447)
117 1in4_A RUVB, holliday junction 56.2 5.8 0.0002 41.7 3.1 17 104-120 52-68 (334)
118 3pfi_A Holliday junction ATP-d 56.2 6.3 0.00022 40.9 3.3 44 72-120 27-72 (338)
119 3n70_A Transport activator; si 55.6 4.2 0.00014 37.3 1.6 20 101-120 22-41 (145)
120 2fz4_A DNA repair protein RAD2 55.5 4.7 0.00016 40.4 2.1 24 96-121 103-126 (237)
121 3sjb_C Golgi to ER traffic pro 55.4 59 0.002 28.7 8.7 64 359-426 22-85 (93)
122 3pxg_A Negative regulator of g 54.6 6.4 0.00022 43.7 3.2 43 72-122 178-220 (468)
123 4fcw_A Chaperone protein CLPB; 54.5 4.2 0.00014 41.5 1.5 17 104-120 48-64 (311)
124 1c4o_A DNA nucleotide excision 54.4 8.2 0.00028 44.9 4.2 73 71-149 2-88 (664)
125 2oap_1 GSPE-2, type II secreti 54.4 5.4 0.00018 45.2 2.6 21 98-120 257-277 (511)
126 2i4i_A ATP-dependent RNA helic 54.2 5.3 0.00018 42.2 2.4 24 95-120 46-69 (417)
127 3hnw_A Uncharacterized protein 54.0 48 0.0016 31.1 8.6 54 360-422 82-135 (138)
128 3cf2_A TER ATPase, transitiona 53.9 7.9 0.00027 46.4 3.9 51 70-120 200-255 (806)
129 1gvn_B Zeta; postsegregational 53.4 8.7 0.0003 39.8 3.8 31 90-120 15-50 (287)
130 1hqc_A RUVB; extended AAA-ATPa 53.0 7.9 0.00027 39.7 3.4 45 71-120 9-55 (324)
131 3h1t_A Type I site-specific re 53.0 6.2 0.00021 44.6 2.8 29 92-121 188-216 (590)
132 1w5s_A Origin recognition comp 52.4 9 0.00031 40.4 3.8 25 96-120 40-69 (412)
133 1tue_A Replication protein E1; 52.3 4.3 0.00015 41.1 1.1 28 95-122 48-77 (212)
134 2chq_A Replication factor C sm 51.8 5 0.00017 40.7 1.6 22 100-121 35-56 (319)
135 1xti_A Probable ATP-dependent 50.0 6.8 0.00023 40.9 2.3 25 94-120 38-62 (391)
136 2ewv_A Twitching motility prot 49.9 4.7 0.00016 43.6 1.1 26 95-120 128-153 (372)
137 3oiy_A Reverse gyrase helicase 49.1 6.4 0.00022 42.0 2.0 24 94-119 29-52 (414)
138 3u61_B DNA polymerase accessor 49.1 6.7 0.00023 40.5 2.1 19 103-121 48-66 (324)
139 2r44_A Uncharacterized protein 48.9 4.9 0.00017 41.8 1.0 25 95-121 40-64 (331)
140 1sxj_E Activator 1 40 kDa subu 48.5 6.6 0.00023 40.9 1.9 16 106-121 39-54 (354)
141 2db3_A ATP-dependent RNA helic 48.4 7.3 0.00025 42.4 2.3 25 94-120 86-110 (434)
142 4b3f_X DNA-binding protein smu 48.2 7.3 0.00025 45.0 2.4 28 94-122 197-224 (646)
143 4emc_A Monopolin complex subun 48.1 56 0.0019 32.4 8.2 47 358-420 18-64 (190)
144 3i5x_A ATP-dependent RNA helic 48.1 8.6 0.00029 42.9 2.9 27 93-119 101-127 (563)
145 1sxj_B Activator 1 37 kDa subu 47.5 8.8 0.0003 39.0 2.6 23 99-121 38-60 (323)
146 2dhr_A FTSH; AAA+ protein, hex 47.1 4.4 0.00015 45.8 0.3 50 70-120 27-81 (499)
147 1rif_A DAR protein, DNA helica 46.9 5.3 0.00018 40.6 0.9 23 97-121 124-146 (282)
148 2ce7_A Cell division protein F 46.8 5.5 0.00019 44.7 1.0 46 70-120 12-66 (476)
149 3fho_A ATP-dependent RNA helic 46.6 8 0.00027 43.1 2.3 26 95-120 150-175 (508)
150 3a7p_A Autophagy protein 16; c 46.3 1.1E+02 0.0038 29.3 9.7 55 360-423 68-122 (152)
151 1fuu_A Yeast initiation factor 45.9 5 0.00017 41.9 0.5 25 94-120 51-75 (394)
152 1hv8_A Putative ATP-dependent 45.6 8.2 0.00028 39.6 2.1 25 95-120 37-61 (367)
153 1n0w_A DNA repair protein RAD5 45.5 9 0.00031 37.3 2.3 31 91-121 9-42 (243)
154 4a2p_A RIG-I, retinoic acid in 45.5 9.1 0.00031 42.1 2.5 25 94-120 15-39 (556)
155 2v1x_A ATP-dependent DNA helic 44.6 11 0.00038 43.2 3.1 26 93-120 51-76 (591)
156 3sja_C Golgi to ER traffic pro 44.5 1.3E+02 0.0044 24.9 8.6 49 360-412 6-54 (65)
157 1r6b_X CLPA protein; AAA+, N-t 44.4 10 0.00034 44.4 2.8 44 72-123 184-227 (758)
158 2v66_B Nuclear distribution pr 44.0 42 0.0014 30.6 6.2 30 396-425 34-63 (111)
159 1qvr_A CLPB protein; coiled co 43.8 8.2 0.00028 46.1 1.9 44 72-123 168-211 (854)
160 3c8u_A Fructokinase; YP_612366 43.8 13 0.00043 36.1 3.0 30 91-120 8-39 (208)
161 3tbk_A RIG-I helicase domain; 43.3 10 0.00035 41.4 2.5 24 95-120 13-36 (555)
162 1nkp_B MAX protein, MYC proto- 42.8 1.1E+02 0.0038 25.7 8.5 64 364-429 16-79 (83)
163 2w0m_A SSO2452; RECA, SSPF, un 42.4 11 0.00037 36.2 2.2 29 93-121 10-41 (235)
164 1w36_D RECD, exodeoxyribonucle 41.6 9.6 0.00033 43.9 2.0 21 103-123 164-184 (608)
165 2p5t_B PEZT; postsegregational 41.3 11 0.00037 38.0 2.1 31 90-120 14-49 (253)
166 1rz3_A Hypothetical protein rb 41.3 14 0.00048 35.6 2.9 29 92-120 8-39 (201)
167 1nlw_A MAD protein, MAX dimeri 41.1 1.4E+02 0.0046 25.4 8.7 65 363-428 14-78 (80)
168 1ojl_A Transcriptional regulat 41.1 12 0.00039 39.1 2.4 20 101-120 23-42 (304)
169 4gl2_A Interferon-induced heli 40.8 10 0.00035 43.4 2.1 25 94-120 15-39 (699)
170 2fwr_A DNA repair protein RAD2 40.7 11 0.00037 41.0 2.2 23 96-120 103-125 (472)
171 1jr3_A DNA polymerase III subu 40.5 17 0.00059 37.7 3.6 18 103-120 38-55 (373)
172 3sqw_A ATP-dependent RNA helic 40.4 13 0.00045 41.9 2.9 27 94-120 51-77 (579)
173 1e9r_A Conjugal transfer prote 40.3 4.2 0.00014 44.2 -1.2 22 103-124 53-74 (437)
174 4gp7_A Metallophosphoesterase; 40.2 8.1 0.00028 36.4 0.9 17 105-121 11-27 (171)
175 2cvh_A DNA repair and recombin 40.1 12 0.00042 35.7 2.2 30 92-121 6-38 (220)
176 3b85_A Phosphate starvation-in 40.0 13 0.00043 36.9 2.3 26 93-120 14-39 (208)
177 1wp9_A ATP-dependent RNA helic 39.8 12 0.00039 39.7 2.2 25 94-121 17-41 (494)
178 1um8_A ATP-dependent CLP prote 39.7 7.8 0.00027 41.2 0.8 18 103-120 72-89 (376)
179 2yy0_A C-MYC-binding protein; 38.4 56 0.0019 25.8 5.4 29 399-427 21-49 (53)
180 3hws_A ATP-dependent CLP prote 38.1 8.9 0.0003 40.6 1.0 18 103-120 51-68 (363)
181 4a74_A DNA repair and recombin 37.8 15 0.0005 35.4 2.4 28 93-120 12-42 (231)
182 2ykg_A Probable ATP-dependent 37.6 14 0.00047 42.4 2.5 23 96-120 23-45 (696)
183 2qag_C Septin-7; cell cycle, c 37.5 9.7 0.00033 42.0 1.1 23 98-120 26-48 (418)
184 2jlq_A Serine protease subunit 37.2 11 0.00037 41.5 1.4 24 95-119 12-35 (451)
185 3upu_A ATP-dependent DNA helic 37.1 16 0.00056 40.1 2.9 36 80-120 27-62 (459)
186 2gza_A Type IV secretion syste 37.1 14 0.00047 39.6 2.3 22 97-120 171-192 (361)
187 3iv1_A Tumor susceptibility ge 37.0 53 0.0018 28.1 5.3 34 393-426 42-75 (78)
188 3lw7_A Adenylate kinase relate 36.6 11 0.00037 34.2 1.2 16 105-120 3-18 (179)
189 3b9q_A Chloroplast SRP recepto 36.6 20 0.00069 37.5 3.4 17 104-120 101-117 (302)
190 3tr0_A Guanylate kinase, GMP k 36.3 10 0.00035 36.0 0.9 16 105-120 9-24 (205)
191 4ag6_A VIRB4 ATPase, type IV s 36.1 9.5 0.00033 40.8 0.8 19 103-121 35-53 (392)
192 2gk6_A Regulator of nonsense t 36.0 14 0.00048 42.5 2.3 26 95-122 189-214 (624)
193 3oja_B Anopheles plasmodium-re 35.9 83 0.0028 35.3 8.6 38 398-435 552-589 (597)
194 2qnr_A Septin-2, protein NEDD5 35.6 9.9 0.00034 39.6 0.8 24 97-120 12-35 (301)
195 3nbx_X ATPase RAVA; AAA+ ATPas 34.9 16 0.00055 41.2 2.4 28 93-122 33-60 (500)
196 3tau_A Guanylate kinase, GMP k 34.9 13 0.00043 36.2 1.4 17 104-120 9-25 (208)
197 3e70_C DPA, signal recognition 34.9 22 0.00076 37.7 3.4 18 103-120 129-146 (328)
198 1ypw_A Transitional endoplasmi 34.6 17 0.00059 43.2 2.8 52 69-120 199-255 (806)
199 1kgd_A CASK, peripheral plasma 34.6 11 0.00038 35.7 0.9 16 105-120 7-22 (180)
200 3pxi_A Negative regulator of g 34.1 21 0.00073 41.8 3.4 43 72-122 178-220 (758)
201 3cf2_A TER ATPase, transitiona 34.1 15 0.00051 44.0 2.1 35 104-138 512-569 (806)
202 3pxi_A Negative regulator of g 34.1 22 0.00074 41.8 3.4 16 105-120 523-538 (758)
203 3na7_A HP0958; flagellar bioge 33.9 1.4E+02 0.0049 30.2 9.2 12 365-376 72-83 (256)
204 3a00_A Guanylate kinase, GMP k 33.8 11 0.00038 35.8 0.8 15 106-120 4-18 (186)
205 1sxj_A Activator 1 95 kDa subu 33.7 17 0.00056 40.8 2.3 18 103-120 77-94 (516)
206 3mq9_A Bone marrow stromal ant 33.6 45 0.0015 36.5 5.7 14 124-137 139-152 (471)
207 2dr3_A UPF0273 protein PH0284; 33.4 16 0.00054 35.5 1.8 26 95-120 12-40 (247)
208 1nkp_A C-MYC, MYC proto-oncoge 33.2 1.7E+02 0.0059 25.1 8.2 64 364-428 20-83 (88)
209 3sop_A Neuronal-specific septi 33.2 12 0.0004 38.6 0.9 19 102-120 1-19 (270)
210 1l8d_A DNA double-strand break 33.1 1.9E+02 0.0066 25.2 8.9 39 390-428 64-102 (112)
211 2l5g_B Putative uncharacterize 32.9 1.2E+02 0.0041 23.0 6.0 31 387-417 6-36 (42)
212 3vlc_E Golgi to ER traffic pro 32.5 33 0.0011 30.4 3.4 56 360-419 30-85 (94)
213 1lvg_A Guanylate kinase, GMP k 32.4 12 0.0004 36.3 0.7 16 105-120 6-21 (198)
214 1zp6_A Hypothetical protein AT 32.2 12 0.00043 35.0 0.8 17 104-120 10-26 (191)
215 1r6b_X CLPA protein; AAA+, N-t 32.0 26 0.00088 41.0 3.6 17 104-120 489-505 (758)
216 2wq1_A General control protein 31.9 96 0.0033 22.3 5.0 30 400-429 3-32 (33)
217 2dgc_A Protein (GCN4); basic d 31.6 70 0.0024 26.0 5.1 33 396-428 29-61 (63)
218 2r8r_A Sensor protein; KDPD, P 31.3 13 0.00043 38.0 0.7 19 104-122 7-25 (228)
219 2b8t_A Thymidine kinase; deoxy 31.3 8.6 0.00029 38.8 -0.5 21 103-123 12-32 (223)
220 1ye8_A Protein THEP1, hypothet 31.1 13 0.00044 35.7 0.7 15 106-120 3-17 (178)
221 1ly1_A Polynucleotide kinase; 31.0 15 0.00051 33.8 1.1 15 105-119 4-18 (181)
222 1lwu_C Fibrinogen gamma chain; 31.0 1.3E+02 0.0044 32.1 8.5 51 362-428 7-57 (323)
223 2lw1_A ABC transporter ATP-bin 31.0 1.9E+02 0.0066 24.6 8.2 22 359-380 28-49 (89)
224 3s4r_A Vimentin; alpha-helix, 30.9 1.5E+02 0.005 25.9 7.4 61 360-424 23-83 (93)
225 2dfs_A Myosin-5A; myosin-V, in 30.8 98 0.0034 38.3 8.5 21 100-120 153-173 (1080)
226 4a4z_A Antiviral helicase SKI2 30.6 21 0.00071 43.7 2.6 23 95-119 48-70 (997)
227 1rj9_A FTSY, signal recognitio 30.5 16 0.00054 38.4 1.3 17 104-120 103-119 (304)
228 2j41_A Guanylate kinase; GMP, 30.3 15 0.0005 34.9 1.0 16 105-120 8-23 (207)
229 2orw_A Thymidine kinase; TMTK, 30.1 7.7 0.00026 37.5 -1.1 19 105-123 5-23 (184)
230 2og2_A Putative signal recogni 30.1 30 0.001 37.3 3.5 17 104-120 158-174 (359)
231 2ehv_A Hypothetical protein PH 30.1 14 0.00049 35.9 0.9 17 105-121 32-48 (251)
232 3trf_A Shikimate kinase, SK; a 30.0 16 0.00054 34.2 1.1 16 105-120 7-22 (185)
233 2oca_A DAR protein, ATP-depend 30.0 16 0.00055 40.1 1.4 22 97-120 124-145 (510)
234 1qvr_A CLPB protein; coiled co 30.0 29 0.001 41.3 3.7 17 104-120 589-605 (854)
235 4a2q_A RIG-I, retinoic acid in 29.9 22 0.00075 41.9 2.5 25 94-120 256-280 (797)
236 1qhx_A CPT, protein (chloramph 29.9 16 0.00055 33.8 1.1 17 104-120 4-20 (178)
237 2px0_A Flagellar biosynthesis 29.8 20 0.0007 37.3 2.0 18 104-121 106-123 (296)
238 1lkx_A Myosin IE heavy chain; 29.7 27 0.00094 41.1 3.3 35 85-120 76-111 (697)
239 1odf_A YGR205W, hypothetical 3 29.5 29 0.00099 36.1 3.1 36 85-120 11-48 (290)
240 3lfu_A DNA helicase II; SF1 he 29.4 17 0.00059 41.2 1.5 19 102-120 21-39 (647)
241 4a2w_A RIG-I, retinoic acid in 29.3 21 0.00073 43.1 2.4 24 95-120 257-280 (936)
242 2qen_A Walker-type ATPase; unk 29.3 24 0.0008 36.0 2.4 17 104-120 32-48 (350)
243 3lnc_A Guanylate kinase, GMP k 29.2 17 0.0006 35.5 1.3 16 105-120 29-44 (231)
244 2bdt_A BH3686; alpha-beta prot 29.2 15 0.00053 34.5 0.9 16 105-120 4-19 (189)
245 1t2k_D Cyclic-AMP-dependent tr 28.8 1.4E+02 0.0049 23.7 6.5 32 396-427 28-59 (61)
246 3iij_A Coilin-interacting nucl 28.6 16 0.00056 34.0 1.0 16 105-120 13-28 (180)
247 1znw_A Guanylate kinase, GMP k 28.3 16 0.00055 35.3 0.9 16 105-120 22-37 (207)
248 1oyw_A RECQ helicase, ATP-depe 28.3 14 0.00047 41.6 0.4 25 94-120 33-57 (523)
249 1w9i_A Myosin II heavy chain; 28.0 30 0.001 41.2 3.3 21 100-120 169-189 (770)
250 1gm5_A RECG; helicase, replica 28.0 23 0.00078 42.2 2.2 26 95-120 381-406 (780)
251 3e1s_A Exodeoxyribonuclease V, 27.9 23 0.0008 40.4 2.3 26 95-122 198-223 (574)
252 2xzl_A ATP-dependent helicase 27.9 23 0.00077 42.3 2.2 20 104-123 376-395 (802)
253 1gk4_A Vimentin; intermediate 27.9 2.2E+02 0.0076 24.1 7.9 33 392-424 28-60 (84)
254 3he5_A Synzip1; heterodimeric 27.8 1.9E+02 0.0066 21.7 6.4 44 361-413 4-47 (49)
255 2pt7_A CAG-ALFA; ATPase, prote 27.8 15 0.00052 38.9 0.6 22 97-120 167-188 (330)
256 2wjy_A Regulator of nonsense t 27.7 23 0.0008 42.2 2.3 26 95-122 365-390 (800)
257 2v26_A Myosin VI; calmodulin-b 27.5 31 0.0011 41.2 3.3 35 85-120 122-157 (784)
258 1yke_B RNA polymerase II holoe 27.3 3.4E+02 0.012 25.7 9.9 65 366-432 70-134 (151)
259 3tif_A Uncharacterized ABC tra 27.3 20 0.0007 35.9 1.5 21 105-125 33-56 (235)
260 3azd_A Short alpha-tropomyosin 27.2 20 0.00069 26.4 1.0 32 398-429 5-36 (37)
261 2k48_A Nucleoprotein; viral pr 27.0 95 0.0033 27.9 5.5 63 359-430 34-101 (107)
262 2wt7_A Proto-oncogene protein 27.0 1.7E+02 0.0058 23.5 6.6 33 395-427 28-60 (63)
263 1ci6_A Transcription factor AT 26.8 1.6E+02 0.0055 23.8 6.5 30 398-427 31-60 (63)
264 2v6i_A RNA helicase; membrane, 26.8 22 0.00077 38.7 1.8 16 105-120 4-19 (431)
265 2yhs_A FTSY, cell division pro 26.7 30 0.001 39.2 2.8 16 105-120 295-310 (503)
266 2oqq_A Transcription factor HY 26.7 1.9E+02 0.0064 21.9 6.1 35 393-427 6-40 (42)
267 3mq7_A Bone marrow stromal ant 26.7 92 0.0032 28.6 5.4 31 398-428 72-102 (121)
268 3kta_A Chromosome segregation 26.6 18 0.00061 33.8 0.8 16 105-120 28-43 (182)
269 3uie_A Adenylyl-sulfate kinase 26.6 24 0.00083 33.7 1.8 19 102-120 24-42 (200)
270 1i84_S Smooth muscle myosin he 26.4 33 0.0011 42.7 3.3 35 85-120 151-186 (1184)
271 1z6g_A Guanylate kinase; struc 26.3 17 0.00059 35.7 0.7 15 106-120 26-40 (218)
272 1kht_A Adenylate kinase; phosp 26.0 20 0.00068 33.3 1.0 16 105-120 5-20 (192)
273 1g8x_A Myosin II heavy chain f 26.0 33 0.0011 42.2 3.1 21 100-120 169-189 (1010)
274 1gmj_A ATPase inhibitor; coile 25.9 2.9E+02 0.0098 23.9 8.1 29 397-425 51-79 (84)
275 3efg_A Protein SLYX homolog; x 25.9 1.7E+02 0.0058 24.8 6.7 32 398-429 29-60 (78)
276 1j8m_F SRP54, signal recogniti 25.9 52 0.0018 34.3 4.3 17 105-121 100-116 (297)
277 2i3b_A HCR-ntpase, human cance 25.8 18 0.00062 35.2 0.7 16 105-120 3-18 (189)
278 1kag_A SKI, shikimate kinase I 25.8 20 0.00069 33.0 1.0 16 105-120 6-21 (173)
279 1m1j_C Fibrinogen gamma chain; 25.8 1.3E+02 0.0045 33.1 7.6 29 402-430 103-131 (409)
280 1w7j_A Myosin VA; motor protei 25.7 35 0.0012 40.8 3.3 21 100-120 153-173 (795)
281 1xx6_A Thymidine kinase; NESG, 25.7 9.8 0.00033 37.3 -1.3 19 105-123 10-28 (191)
282 2pms_C Pneumococcal surface pr 25.7 3.4E+02 0.012 25.1 9.1 68 359-431 12-88 (125)
283 1kk8_A Myosin heavy chain, str 25.7 33 0.0011 41.3 3.0 21 100-120 166-186 (837)
284 2v71_A Nuclear distribution pr 25.6 1.1E+02 0.0037 30.4 6.2 27 399-425 90-116 (189)
285 2ycu_A Non muscle myosin 2C, a 25.6 35 0.0012 41.8 3.3 34 86-120 129-163 (995)
286 3crv_A XPD/RAD3 related DNA he 25.5 28 0.00097 39.2 2.4 28 91-120 12-39 (551)
287 4db1_A Myosin-7; S1DC, cardiac 25.5 36 0.0012 40.7 3.3 21 100-120 168-188 (783)
288 3t5d_A Septin-7; GTP-binding p 25.4 19 0.00066 36.5 0.9 22 99-120 4-25 (274)
289 3vaa_A Shikimate kinase, SK; s 25.4 22 0.00074 34.1 1.2 16 105-120 27-42 (199)
290 3sr0_A Adenylate kinase; phosp 25.2 23 0.00079 34.9 1.4 29 106-134 3-37 (206)
291 1moz_A ARL1, ADP-ribosylation 25.2 28 0.00096 31.8 1.9 27 94-120 8-35 (183)
292 3kl4_A SRP54, signal recogniti 25.0 49 0.0017 36.6 4.1 19 104-122 98-116 (433)
293 2ze6_A Isopentenyl transferase 24.7 22 0.00075 35.9 1.1 15 105-119 3-17 (253)
294 2z83_A Helicase/nucleoside tri 24.6 26 0.0009 38.5 1.8 15 105-119 23-37 (459)
295 1knq_A Gluconate kinase; ALFA/ 24.6 21 0.00073 33.0 1.0 17 104-120 9-25 (175)
296 3kb2_A SPBC2 prophage-derived 24.6 23 0.00078 32.3 1.1 16 105-120 3-18 (173)
297 2fna_A Conserved hypothetical 24.6 27 0.00091 35.6 1.8 17 104-120 31-47 (357)
298 2zj8_A DNA helicase, putative 24.5 19 0.00065 41.8 0.7 20 99-120 37-56 (720)
299 3umf_A Adenylate kinase; rossm 24.4 26 0.00088 35.0 1.6 30 105-134 31-66 (217)
300 1gku_B Reverse gyrase, TOP-RG; 24.3 31 0.001 42.4 2.5 23 94-118 64-86 (1054)
301 2d7d_A Uvrabc system protein B 24.2 47 0.0016 38.6 3.9 75 70-149 4-92 (661)
302 1ykh_B RNA polymerase II holoe 24.1 4.2E+02 0.014 24.4 9.7 59 367-427 71-129 (132)
303 3a7o_A Autophagy protein 16; c 24.1 78 0.0027 26.6 4.0 27 399-425 48-74 (75)
304 1yks_A Genome polyprotein [con 24.1 25 0.00086 38.5 1.5 21 98-120 5-25 (440)
305 1hjb_A Ccaat/enhancer binding 24.0 1.7E+02 0.0058 25.4 6.5 35 396-430 42-76 (87)
306 2vl7_A XPD; helicase, unknown 23.9 32 0.0011 38.7 2.4 26 93-120 18-43 (540)
307 3m9b_A Proteasome-associated A 23.8 66 0.0023 33.2 4.4 64 361-424 25-95 (251)
308 3dm5_A SRP54, signal recogniti 23.7 50 0.0017 36.7 3.8 20 103-122 100-119 (443)
309 4anj_A Unconventional myosin-V 23.6 40 0.0014 41.6 3.3 35 85-120 126-161 (1052)
310 2qor_A Guanylate kinase; phosp 23.6 21 0.00073 34.2 0.8 16 105-120 14-29 (204)
311 1f2t_A RAD50 ABC-ATPase; DNA d 23.6 25 0.00085 32.6 1.2 16 105-120 25-40 (149)
312 1uf9_A TT1252 protein; P-loop, 23.5 28 0.00097 32.7 1.6 21 100-120 5-25 (203)
313 2pcj_A ABC transporter, lipopr 23.4 26 0.00089 34.8 1.4 20 106-125 33-55 (224)
314 2xgj_A ATP-dependent RNA helic 23.2 30 0.001 42.4 2.0 22 97-120 97-118 (1010)
315 4etp_A Kinesin-like protein KA 23.1 1.9E+02 0.0065 31.6 8.3 54 362-424 5-58 (403)
316 1vma_A Cell division protein F 23.0 23 0.00078 37.2 0.9 17 104-120 105-121 (306)
317 2p6r_A Afuhel308 helicase; pro 22.9 19 0.00066 41.6 0.3 30 81-120 28-57 (702)
318 1tev_A UMP-CMP kinase; ploop, 22.9 24 0.00082 32.8 0.9 16 105-120 5-20 (196)
319 1x79_B RAB GTPase binding effe 22.9 2.8E+02 0.0096 25.2 7.9 36 395-430 50-85 (112)
320 2rhm_A Putative kinase; P-loop 22.8 23 0.0008 33.0 0.8 17 104-120 6-22 (193)
321 2qag_A Septin-2, protein NEDD5 22.7 25 0.00086 37.6 1.1 24 97-120 31-54 (361)
322 1uaa_A REP helicase, protein ( 22.7 27 0.00091 40.3 1.4 20 102-121 14-33 (673)
323 3ghg_A Fibrinogen alpha chain; 22.4 35 0.0012 38.7 2.2 13 688-700 483-495 (562)
324 2xau_A PRE-mRNA-splicing facto 22.4 27 0.00092 41.4 1.4 15 105-119 111-125 (773)
325 3rc3_A ATP-dependent RNA helic 22.3 24 0.00082 41.3 0.9 15 105-119 157-171 (677)
326 1zxa_A CGMP-dependent protein 22.3 1.4E+02 0.0048 24.8 5.3 37 389-425 17-53 (67)
327 1a5t_A Delta prime, HOLB; zinc 22.3 42 0.0014 35.0 2.8 27 94-120 14-41 (334)
328 2eyq_A TRCF, transcription-rep 22.3 45 0.0015 41.4 3.4 27 94-120 615-641 (1151)
329 3cm0_A Adenylate kinase; ATP-b 22.3 27 0.00093 32.5 1.2 16 105-120 6-21 (186)
330 3l9o_A ATP-dependent RNA helic 22.2 30 0.001 42.9 1.8 25 94-120 192-216 (1108)
331 1g6h_A High-affinity branched- 22.2 29 0.00099 35.2 1.5 20 106-125 36-58 (257)
332 1y63_A LMAJ004144AAA protein; 22.0 26 0.00088 33.1 1.0 16 105-120 12-27 (184)
333 3asz_A Uridine kinase; cytidin 22.0 24 0.00083 33.7 0.8 16 105-120 8-23 (211)
334 2dfs_A Myosin-5A; myosin-V, in 22.0 1.8E+02 0.0062 35.9 8.6 12 179-190 742-753 (1080)
335 2r2v_A GCN4 leucine zipper; co 21.9 1.8E+02 0.0061 21.1 5.0 30 400-429 4-33 (34)
336 3dl0_A Adenylate kinase; phosp 21.9 42 0.0014 32.2 2.5 29 106-134 3-37 (216)
337 3gfo_A Cobalt import ATP-bindi 21.9 30 0.001 35.8 1.4 20 106-125 37-59 (275)
338 2ic6_A Nucleocapsid protein; h 21.7 1.2E+02 0.0042 25.9 4.9 16 361-376 6-21 (78)
339 1e6c_A Shikimate kinase; phosp 21.7 26 0.0009 32.1 0.9 16 105-120 4-19 (173)
340 2bbw_A Adenylate kinase 4, AK4 21.7 26 0.00087 34.7 0.9 28 104-131 28-61 (246)
341 1htw_A HI0065; nucleotide-bind 21.7 59 0.002 30.5 3.4 18 104-121 34-51 (158)
342 1v5w_A DMC1, meiotic recombina 21.7 41 0.0014 35.5 2.6 31 91-121 107-140 (343)
343 3fb4_A Adenylate kinase; psych 21.5 35 0.0012 32.6 1.9 29 106-134 3-37 (216)
344 1sq5_A Pantothenate kinase; P- 21.5 51 0.0017 34.1 3.2 18 103-120 80-97 (308)
345 1am9_A Srebp-1A, protein (ster 21.4 3.6E+02 0.012 22.6 9.3 59 363-424 19-77 (82)
346 3m6a_A ATP-dependent protease 21.4 25 0.00087 39.7 0.9 18 103-120 108-125 (543)
347 2yz2_A Putative ABC transporte 21.4 31 0.0011 35.2 1.5 20 106-125 36-58 (266)
348 3oja_B Anopheles plasmodium-re 21.4 4.1E+02 0.014 29.5 10.9 13 363-375 480-492 (597)
349 1ji0_A ABC transporter; ATP bi 21.4 31 0.0011 34.6 1.5 20 106-125 35-57 (240)
350 4eun_A Thermoresistant glucoki 21.4 27 0.00092 33.4 0.9 17 104-120 30-46 (200)
351 2v66_B Nuclear distribution pr 21.3 3.8E+02 0.013 24.3 8.4 14 363-376 13-26 (111)
352 3k1j_A LON protease, ATP-depen 21.2 39 0.0013 38.6 2.4 39 72-120 39-77 (604)
353 2cbz_A Multidrug resistance-as 21.1 31 0.0011 34.5 1.4 21 105-125 33-56 (237)
354 2r2a_A Uncharacterized protein 21.1 25 0.00087 34.5 0.7 16 105-120 7-22 (199)
355 2iut_A DNA translocase FTSK; n 21.1 25 0.00085 40.5 0.7 19 104-122 215-233 (574)
356 1b0u_A Histidine permease; ABC 21.0 32 0.0011 35.1 1.4 20 106-125 35-57 (262)
357 1ci6_A Transcription factor AT 21.0 2E+02 0.0068 23.2 6.0 31 397-427 23-53 (63)
358 1nks_A Adenylate kinase; therm 21.0 27 0.00093 32.3 0.9 15 105-119 3-17 (194)
359 2vli_A Antibiotic resistance p 20.9 30 0.001 32.0 1.1 17 104-120 6-22 (183)
360 2va8_A SSO2462, SKI2-type heli 20.9 33 0.0011 39.7 1.7 17 104-120 47-63 (715)
361 1sgw_A Putative ABC transporte 20.8 31 0.001 34.3 1.2 20 106-125 38-60 (214)
362 1deq_A Fibrinogen (alpha chain 20.7 2.2E+02 0.0077 31.0 7.9 46 359-406 112-157 (390)
363 3na7_A HP0958; flagellar bioge 20.7 4.3E+02 0.015 26.6 10.0 35 394-428 50-84 (256)
364 1w4r_A Thymidine kinase; type 20.6 31 0.0011 34.3 1.2 26 94-119 11-36 (195)
365 2ff7_A Alpha-hemolysin translo 20.5 33 0.0011 34.6 1.5 20 106-125 38-60 (247)
366 3t61_A Gluconokinase; PSI-biol 20.4 30 0.001 33.0 1.0 17 104-120 19-35 (202)
367 4ddu_A Reverse gyrase; topoiso 20.3 42 0.0014 41.5 2.5 25 94-120 86-110 (1104)
368 2iyv_A Shikimate kinase, SK; t 20.2 30 0.001 32.3 1.0 16 105-120 4-19 (184)
369 1svm_A Large T antigen; AAA+ f 20.2 44 0.0015 36.2 2.4 17 104-120 170-186 (377)
370 2k48_A Nucleoprotein; viral pr 20.1 4.8E+02 0.016 23.5 9.2 29 390-418 75-103 (107)
371 4g1u_C Hemin import ATP-bindin 20.1 35 0.0012 34.9 1.5 20 106-125 40-62 (266)
372 1s96_A Guanylate kinase, GMP k 20.1 29 0.001 34.4 0.9 16 105-120 18-33 (219)
No 1
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=9.1e-89 Score=742.95 Aligned_cols=342 Identities=38% Similarity=0.517 Sum_probs=291.1
Q ss_pred CCCCCCeEEEEEcCCCCchhhhcCCCCceEeeC---CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHH
Q 004378 19 SAREEKILVLVRLRPLSEKEITADEATDWECIN---DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (758)
Q Consensus 19 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~---~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV 95 (758)
.+..++|+|+|||||++++|...+....+.+.+ ..++.+. .+.|.||+||+++++|++||+.+++|+|
T Consensus 7 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~~---------~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 77 (365)
T 2y65_A 7 IPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA---------GKVYLFDKVFKPNASQEKVYNEAAKSIV 77 (365)
T ss_dssp -CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHH
T ss_pred CCCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEEC---------CEEEeCceEecCCCCHHHHHHHhhhhHH
Confidence 346789999999999999998877766666654 3444431 2589999999999999999999999999
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhc-cccceEEEeehhhhhhhhhhcccCCCC
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRH-EERAFVLKFSAMEIYNEAIRDLLSTDN 165 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~-~~~~~~V~vS~lEIYnE~V~DLL~~~~ 165 (758)
+++|+|||+||||||||||||||||+ ||+||++++||+.+... ....|.|++||+|||||+|+|||++..
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 157 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK 157 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC
T ss_pred HHHhCCCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc
Confidence 99999999999999999999999996 68999999999999864 456899999999999999999999988
Q ss_pred CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEE
Q 004378 166 TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSA 245 (758)
Q Consensus 166 ~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~s 245 (758)
..+.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+... .......|
T Consensus 158 ~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~s 232 (365)
T 2y65_A 158 VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENL-----ENQKKLSG 232 (365)
T ss_dssp CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEET-----TTCCEEEE
T ss_pred CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEec-----CCCCEeEE
Confidence 8999999999999999999999999999999999999999999999999999999999999987643 23346789
Q ss_pred EEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCC
Q 004378 246 SVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (758)
Q Consensus 246 kL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISP 325 (758)
+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||
T Consensus 233 kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 312 (365)
T 2y65_A 233 KLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSP 312 (365)
T ss_dssp EEEEEECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECC
T ss_pred EEEEEECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecC
Confidence 99999999999999999999999999999999999999999999887789999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHH
Q 004378 326 ARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLES 374 (758)
Q Consensus 326 s~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~ 374 (758)
+..+++||++||+||.|||+|+|+|.+|+..+.+.++++|++|+.+|+.
T Consensus 313 ~~~~~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~~~~ 361 (365)
T 2y65_A 313 ASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNAR 361 (365)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC----------
T ss_pred ccCCHHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998899989888877654
No 2
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=3e-88 Score=739.87 Aligned_cols=345 Identities=37% Similarity=0.574 Sum_probs=290.1
Q ss_pred CCCCCCeEEEEEcCCCCchhhhcCCCCceEeeC-CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHH
Q 004378 19 SAREEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALS 97 (758)
Q Consensus 19 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~ 97 (758)
....++|+|+|||||++++|...+....+.+.. ..++.+..+.......++.|.||+||+++++|++||+.+++|+|++
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 96 (372)
T 3b6u_A 17 QGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDS 96 (372)
T ss_dssp ----CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHH
T ss_pred CCCCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHH
Confidence 355689999999999999998877777776654 4567766543323345689999999999999999999999999999
Q ss_pred hhcCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCC-CC
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN-TP 167 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~-~~ 167 (758)
+|+|||+||||||||||||||||+ ||+||++.+||..+....+..|.|++||+|||||+|+|||++.. ..
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 176 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKR 176 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCC
T ss_pred HhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCC
Confidence 999999999999999999999996 57899999999999988888999999999999999999998764 57
Q ss_pred CccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEE
Q 004378 168 LRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASV 247 (758)
Q Consensus 168 l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL 247 (758)
+.+++++.++++|.||+++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|++..... .+......|+|
T Consensus 177 l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~--~~~~~~~~skL 254 (372)
T 3b6u_A 177 LELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGL--DGENHIRVGKL 254 (372)
T ss_dssp BCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-------CCCEEEEEE
T ss_pred ceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCC--CCCcceEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999998764321 22334678999
Q ss_pred EEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCc
Q 004378 248 NFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPAR 327 (758)
Q Consensus 248 ~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~ 327 (758)
+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+.
T Consensus 255 ~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~ 334 (372)
T 3b6u_A 255 NLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPAS 334 (372)
T ss_dssp EEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBG
T ss_pred EEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999988778999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhhcccccceeccccCHHHHHHHHH
Q 004378 328 SHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQ 366 (758)
Q Consensus 328 ~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq 366 (758)
.+++||++||+||+|||+|+|+|++|+...+ +++++||
T Consensus 335 ~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~-~~~~~~~ 372 (372)
T 3b6u_A 335 YNVEETLTTLRYANRAKNIKNKPRVNEDPKD-ALLREFQ 372 (372)
T ss_dssp GGHHHHHHHHHHHHHHTTCBCCCCCCC------------
T ss_pred cCHHHHHHHHHHHHHHhhccccceecCChHH-HHHHhcC
Confidence 9999999999999999999999999998644 5666654
No 3
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=9.7e-88 Score=732.69 Aligned_cols=330 Identities=35% Similarity=0.520 Sum_probs=306.0
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 20 ~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
...++|+|+|||||+++.|...+....+.+.++.++.+... ...+.|.||+||+++++|++||+.+++|+|++++
T Consensus 3 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 77 (355)
T 1goj_A 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSK-----EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDIL 77 (355)
T ss_dssp CSSCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEEEECST-----TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHT
T ss_pred CCCCCeEEEEECCCCChHHhhcCCceEEEEcCCCeEEEccC-----CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHh
Confidence 44689999999999999999888788888887777765332 2357899999999999999999999999999999
Q ss_pred cCCCeeEEeeccCCCCcccccCC----------CCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCCCCC
Q 004378 100 SGINSSIFAYGQTSSGKTYTMTG----------ITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNTPL 168 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~G----------ii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~~l 168 (758)
+|||+||||||||||||||||+| |+||++++||..+.... ...|.|++||+|||||+|+|||++....+
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l 157 (355)
T 1goj_A 78 NGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNL 157 (355)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSC
T ss_pred CCCcceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCc
Confidence 99999999999999999999965 88999999999998654 56899999999999999999999988899
Q ss_pred ccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEE
Q 004378 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (758)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~ 248 (758)
.+++++.+|++|.||+++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|++... .......++|+
T Consensus 158 ~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~ 232 (355)
T 1goj_A 158 PVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNV-----ETGSAKSGQLF 232 (355)
T ss_dssp CEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEET-----TTTEEEEEEEE
T ss_pred eeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEecc-----CCCceeeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999987643 23356789999
Q ss_pred EEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcc
Q 004378 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (758)
Q Consensus 249 fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~ 328 (758)
|||||||||+.++++.|.+++|+.+||+||++||+||.+|++++..|||||||||||||||+||||++|+|||||||+..
T Consensus 233 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~ 312 (355)
T 1goj_A 233 LVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSY 312 (355)
T ss_dssp EEECCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGG
T ss_pred EEECCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccc
Confidence 99999999999999999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccccceeccccCHH
Q 004378 329 HVEQTRNTLLFACCAKEVTTKAQVNVVMSDK 359 (758)
Q Consensus 329 ~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~ 359 (758)
+++||++||+||+|||+|+|+|++|+..+..
T Consensus 313 ~~~ETl~TL~fA~rak~I~n~~~vn~~~~~~ 343 (355)
T 1goj_A 313 NDAETLSTLRFGMRAKSIKNKAKVNAELSPA 343 (355)
T ss_dssp GHHHHHHHHHHHHHHHTCBCCCCCCSSSSCS
T ss_pred cHHHHHHHHHHHHHHhhccCCceeCCCCCHH
Confidence 9999999999999999999999999987664
No 4
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-87 Score=737.23 Aligned_cols=338 Identities=28% Similarity=0.440 Sum_probs=251.7
Q ss_pred CCCCCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHH
Q 004378 17 APSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIAL 96 (758)
Q Consensus 17 ~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~ 96 (758)
...+..++|+|+|||||++++|...+...++...++.++.+.... .......|.||+||+++++|++||+.+++|+|+
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~--~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~ 92 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR--NHQETLKYQFDAFYGERSTQQDIYAGSVQPILR 92 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHH
T ss_pred cccCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCC--CCCCeeEEEcceEecCCCCHhHHHHHHHHHHHH
Confidence 345667899999999999999976655555555555555553321 112346899999999999999999999999999
Q ss_pred HhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhc----cccceEEEeehhhhhhhhhhcccCCCCC
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH----EERAFVLKFSAMEIYNEAIRDLLSTDNT 166 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~----~~~~~~V~vS~lEIYnE~V~DLL~~~~~ 166 (758)
++|+|||+||||||||||||||||+ ||+||++.+||+.+... ....|.|++||+|||||+|+|||++...
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~ 172 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASG 172 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSC
T ss_pred HhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCC
Confidence 9999999999999999999999996 59999999999999753 3457999999999999999999999888
Q ss_pred CCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEE
Q 004378 167 PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS 246 (758)
Q Consensus 167 ~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~sk 246 (758)
.+.|++++.++++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++.... .......|+
T Consensus 173 ~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~----~~~~~~~sk 248 (388)
T 3bfn_A 173 DLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERL----APFRQREGK 248 (388)
T ss_dssp BCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESS----TTCCEEEEE
T ss_pred CceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccC----CCCceeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999876432 222357899
Q ss_pred EEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCC
Q 004378 247 VNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPA 326 (758)
Q Consensus 247 L~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs 326 (758)
|+|||||||||..++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+
T Consensus 249 L~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~ 327 (388)
T 3bfn_A 249 LYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPE 327 (388)
T ss_dssp EEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCS
T ss_pred EEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCc
Confidence 9999999999999999999999999999999999999999999875 499999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhhcccccceeccccCHHHH
Q 004378 327 RSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKAL 361 (758)
Q Consensus 327 ~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~~~l 361 (758)
..+++||++||+||+|||+|+|+|.+|+..+..++
T Consensus 328 ~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~~~l 362 (388)
T 3bfn_A 328 RRFYLDTVSALNFAARSKEVINRPFTNESLQPHAL 362 (388)
T ss_dssp GGGHHHHHHHHHHHCSEEEEC--------------
T ss_pred cccHHHHHHHHHHHHHHhhCcCcCcccCCCCHHHH
Confidence 99999999999999999999999999999877654
No 5
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=6.7e-87 Score=724.64 Aligned_cols=330 Identities=44% Similarity=0.669 Sum_probs=285.2
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCceEee-CCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 21 REEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
++++|+|+|||||++++|...++...+.+. ++.++.... ..+.|.||+||+++++|++||+.+++|+|+++|
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~-------~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l 74 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD-------GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAI 74 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT-------SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHH
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC-------CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999876665443332 233443211 236899999999999999999999999999999
Q ss_pred cCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccCCCC--CCCccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLSTDN--TPLRLL 171 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~~~~--~~l~i~ 171 (758)
+|||+||||||||||||||||+ ||+||++++||+.+...++..|.|++||+|||||+|+|||++.. .++.++
T Consensus 75 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ 154 (349)
T 1t5c_A 75 QGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIR 154 (349)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEE
T ss_pred cCCccceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEE
Confidence 9999999999999999999997 59999999999999988888999999999999999999998654 579999
Q ss_pred cCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEE
Q 004378 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (758)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVD 251 (758)
+++.++++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|.|++...............|+|+|||
T Consensus 155 ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVD 234 (349)
T 1t5c_A 155 EDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVD 234 (349)
T ss_dssp ETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEE
T ss_pred ECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999876543211222346789999999
Q ss_pred cCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCC-CCcccCCCCcccccccccCCCCcceeEEeecCCCcccH
Q 004378 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR-NGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHV 330 (758)
Q Consensus 252 LAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~-~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~ 330 (758)
||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ ..|||||||||||||||+||||++|+|||||||+ ++
T Consensus 235 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~ 312 (349)
T 1t5c_A 235 LAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SF 312 (349)
T ss_dssp CCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CS
T ss_pred CCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CH
Confidence 99999999999999999999999999999999999999875 3699999999999999999999999999999997 58
Q ss_pred HHHHHHHHHHHHhhcccccceeccccCHH
Q 004378 331 EQTRNTLLFACCAKEVTTKAQVNVVMSDK 359 (758)
Q Consensus 331 eETlsTLrFA~rAk~Ikn~~~vN~~~s~~ 359 (758)
+||++||+||+|||+|+|+|++|+.....
T Consensus 313 ~ETlsTL~fA~rak~I~n~~~vn~~~~~~ 341 (349)
T 1t5c_A 313 DETLTALQFASTAKYMKNTPYVNEVSTDE 341 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCCEEC---
T ss_pred HHHHHHHHHHHHHhhcccCceeccCCCCC
Confidence 99999999999999999999999986543
No 6
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.6e-86 Score=724.19 Aligned_cols=339 Identities=37% Similarity=0.550 Sum_probs=299.8
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhhcC
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG 101 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G 101 (758)
.++|+|+|||||++++|...+....+...+..++..... ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~v~~~~~----~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G 78 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWK----DDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDG 78 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEECSSSEEEEECT----TSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTT
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEcCCcEEEEecCC----CCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcC
Confidence 478999999999999998766655555544445543221 1224789999999999999999999 79999999999
Q ss_pred CCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhccc-cceEEEeehhhhhhhhhhcccCCCC---CCCccc
Q 004378 102 INSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHEE-RAFVLKFSAMEIYNEAIRDLLSTDN---TPLRLL 171 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~~-~~~~V~vS~lEIYnE~V~DLL~~~~---~~l~i~ 171 (758)
||+||||||||||||||||+ ||+||++.+||+.+..... ..|.|++||+|||||+|+|||.+.. ..+.++
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~ 158 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIK 158 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEE
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEE
Confidence 99999999999999999996 6999999999999987654 5899999999999999999998753 579999
Q ss_pred cCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEE
Q 004378 172 DDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVD 251 (758)
Q Consensus 172 ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVD 251 (758)
+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+|||
T Consensus 159 e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~lVD 233 (369)
T 3cob_A 159 KDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNL-----QTQAIARGKLSFVD 233 (369)
T ss_dssp ECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEET-----TTCCEEEEEEEEEE
T ss_pred ECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecC-----CCCcEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987643 23346789999999
Q ss_pred cCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHH
Q 004378 252 LAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVE 331 (758)
Q Consensus 252 LAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~e 331 (758)
||||||+.++++.|.|++|+.+||+||++||+||.+|+.++ .|||||||||||||||+||||++|+|||||||+..+++
T Consensus 234 LAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ 312 (369)
T 3cob_A 234 LAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312 (369)
T ss_dssp CCCSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHH
Confidence 99999999999999999999999999999999999999864 59999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccceeccccCHHHHHHHHHHHHHHHHH
Q 004378 332 QTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLES 374 (758)
Q Consensus 332 ETlsTLrFA~rAk~Ikn~~~vN~~~s~~~li~~Lq~Ei~~L~~ 374 (758)
||++||+||+|||+|+|+|.+|+.. ..+.+|+++++.|++
T Consensus 313 ETl~TLrfA~rak~i~~~~~~n~~~---~ei~~L~~~l~~~~~ 352 (369)
T 3cob_A 313 ETHNSLTYASRVRSIVNDPSKNVSS---KEVARLKKLVSYWKE 352 (369)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCEEC---HHHHHHHHHTTCC--
T ss_pred HHHHHHHHHHHHhhcccCCcccCCH---HHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 234444444444443
No 7
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=1.9e-86 Score=721.03 Aligned_cols=332 Identities=36% Similarity=0.538 Sum_probs=271.3
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeC-CcEEEeecCCC-----CCCCCCcccccCeecCCCCChhHHHhhhhHHHH
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECIN-DTTILYRNTLR-----EGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~-~~ti~~~~~~~-----~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV 95 (758)
.++|+|+|||||++++|...+...++.+.. +.+|.+..+.. .....++.|.||+||+++++|++||+.+++|+|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv 82 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLI 82 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHHH
Confidence 578999999999999998877777776654 34666654321 112345789999999999999999999999999
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHh-ccccceEEEeehhhhhhhhhhcccCCCCCCC
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHR-HEERAFVLKFSAMEIYNEAIRDLLSTDNTPL 168 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~-~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~l 168 (758)
+++|+|||+||||||||||||||||+ ||+||++++||+.+.. .....|.|++||+|||||+|+|||+ ....+
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~-~~~~l 161 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKL 161 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTT-TEEEE
T ss_pred HHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEccc-CCcCc
Confidence 99999999999999999999999997 5999999999999984 4567899999999999999999998 45679
Q ss_pred ccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEE
Q 004378 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (758)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~ 248 (758)
.+++++.++++|.||+++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|++.... .+......|+|+
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~---~~~~~~~~skl~ 238 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVI---ENKEVIRVGKLN 238 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC-------CEEEEEEEE
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeecc---CCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999876432 223346789999
Q ss_pred EEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcc
Q 004378 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (758)
Q Consensus 249 fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~ 328 (758)
|||||||||..++++.|.|++|+.+||+||++||+||.+|++++ .|||||||||||||||+||||++|+|||||||+..
T Consensus 239 lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~ 317 (350)
T 2vvg_A 239 LVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPAST 317 (350)
T ss_dssp EEECCCCCC---------------CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGG
T ss_pred EEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccc
Confidence 99999999999999999999999999999999999999999875 69999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhcccccceeccccCH
Q 004378 329 HVEQTRNTLLFACCAKEVTTKAQVNVVMSD 358 (758)
Q Consensus 329 ~~eETlsTLrFA~rAk~Ikn~~~vN~~~s~ 358 (758)
+++||++||+||+|||+|+|+|++|+.+.+
T Consensus 318 ~~~ETl~TL~fA~rak~i~n~~~~n~~~~~ 347 (350)
T 2vvg_A 318 NYDETMSTLRYADRAKQIKNKPRINEDPKD 347 (350)
T ss_dssp GHHHHHHHHHHHHHHTTCBCCCCCCBSCTT
T ss_pred cHHHHHHHHHHHHHHhhccccceecCCchh
Confidence 999999999999999999999999987654
No 8
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=2.9e-86 Score=722.31 Aligned_cols=331 Identities=37% Similarity=0.533 Sum_probs=275.9
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCCCceEeeCC-cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHh
Q 004378 20 AREEKILVLVRLRPLSEKEITADEATDWECIND-TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (758)
Q Consensus 20 ~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~-~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~v 98 (758)
...++|+|+|||||++.+|...+....+.+.+. .++.+...........+.|.||+||+++++|++||+.+++|+|+++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~ 84 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEV 84 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHH
Confidence 456899999999999999988777777777654 4555543211112234689999999999999999999999999999
Q ss_pred hcCCCeeEEeeccCCCCcccccC-----------------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMT-----------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~-----------------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL 161 (758)
|+|||+||||||||||||||||+ ||+||++++||+.+.. ....|.|++||+|||||+|+|||
T Consensus 85 l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~-~~~~~~v~vS~~EIYnE~i~DLL 163 (359)
T 1x88_A 85 IMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD-NGTEFSVKVSLLEIYNEELFDLL 163 (359)
T ss_dssp HTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS-SSEEEEEEEEEEEEETTEEEETT
T ss_pred hCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc-cCceEEEEEEEEEEeCceeeehh
Confidence 99999999999999999999995 6889999999999875 45789999999999999999999
Q ss_pred CCCC---CCCccccCCC--CcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccC
Q 004378 162 STDN---TPLRLLDDPE--KGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 236 (758)
Q Consensus 162 ~~~~---~~l~i~ed~~--~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~ 236 (758)
++.. ..+.+++++. ++++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++.....
T Consensus 164 ~~~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~-- 241 (359)
T 1x88_A 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI-- 241 (359)
T ss_dssp CTTSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECT--
T ss_pred cccccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccC--
Confidence 8765 4688998874 78999999999999999999999999999999999999999999999999998754321
Q ss_pred CCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcc
Q 004378 237 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNAR 316 (758)
Q Consensus 237 ~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNsk 316 (758)
.+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++
T Consensus 242 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGnsk 320 (359)
T 1x88_A 242 DGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVER-TPHVPYRESKLTRILQDSLGGRTR 320 (359)
T ss_dssp TSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGSSSSSE
T ss_pred CCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcC-CCCCccccchHHHHHHHHhCCCCe
Confidence 2233456899999999999999999999999999999999999999999999985 469999999999999999999999
Q ss_pred eeEEeecCCCcccHHHHHHHHHHHHHhhcccccceecc
Q 004378 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (758)
Q Consensus 317 T~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~ 354 (758)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+
T Consensus 321 t~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 321 TSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp EEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 99999999999999999999999999999999999996
No 9
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=1.2e-85 Score=708.75 Aligned_cols=312 Identities=40% Similarity=0.576 Sum_probs=292.1
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 20 ~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
...++|+|+|||||++++|...+....+.+.++.++.+. .+.|.||+||+++++|++||+.+++|+|++++
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~---------~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l 74 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA---------SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVL 74 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEET---------TEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEEC---------CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHh
Confidence 457899999999999999998888888888888887662 25899999999999999999999999999999
Q ss_pred cCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHh-ccccceEEEeehhhhhhhhhhcccCCCCCCCc
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHR-HEERAFVLKFSAMEIYNEAIRDLLSTDNTPLR 169 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~-~~~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~ 169 (758)
+|||+||||||||||||||||+ ||+||++++||+.+.. ..+..|.|++||+|||||+|+|||++....+.
T Consensus 75 ~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~ 154 (325)
T 1bg2_A 75 EGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLS 154 (325)
T ss_dssp TTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBC
T ss_pred CCCeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCce
Confidence 9999999999999999999997 5899999999999975 34578999999999999999999999889999
Q ss_pred cccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEE
Q 004378 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (758)
Q Consensus 170 i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~f 249 (758)
+++++.++++|.||+++.|.++++++++|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+|
T Consensus 155 i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skl~l 229 (325)
T 1bg2_A 155 VHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENT-----QTEQKLSGKLYL 229 (325)
T ss_dssp EEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEET-----TTCCEEEEEEEE
T ss_pred EEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEec-----CCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999987643 233467899999
Q ss_pred EEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCccc
Q 004378 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (758)
Q Consensus 250 VDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~ 329 (758)
||||||||..++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+|||||||+..+
T Consensus 230 VDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~ 308 (325)
T 1bg2_A 230 VDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308 (325)
T ss_dssp EECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGG
T ss_pred EECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcC-CCCCcccccHHHHHHHHHhCCCCcEEEEEEECCcccc
Confidence 999999999999999999999999999999999999999987 4599999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc
Q 004378 330 VEQTRNTLLFACCAKEV 346 (758)
Q Consensus 330 ~eETlsTLrFA~rAk~I 346 (758)
++||++||+||+|||+|
T Consensus 309 ~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 309 ESETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999987
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=1.5e-85 Score=718.20 Aligned_cols=330 Identities=36% Similarity=0.569 Sum_probs=278.3
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCC--------CChhHHHhhhhHH
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGD--------CSTTQVYEDGAKE 93 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~--------asQ~eVy~~~v~p 93 (758)
..+|+|+|||||++++|...+..+.+.+.++.+++. ++. .....++.|+||+||+++ ++|++||+.+++|
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~-~~~-~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~p 80 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIV-NPK-QPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEE 80 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEEC-CTT-CTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEe-ccC-CCCCCceEEecceEeecCccccccccCcHHHHHHHHHHH
Confidence 357999999999999998877777777776655443 321 122345789999999987 8999999999999
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccC--------CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMT--------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLST 163 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~--------Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~ 163 (758)
+|+++|+|||+||||||||||||||||+ ||+||++++||..|.... ...|.|++||+|||||+|+|||++
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~ 160 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCT
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEcccc
Confidence 9999999999999999999999999996 589999999999998654 467999999999999999999987
Q ss_pred CC-CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCcee
Q 004378 164 DN-TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTT 242 (758)
Q Consensus 164 ~~-~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~ 242 (758)
.. ..+++++++.+|++|.||+++.|.+++|++.+|..|.++|++++|.||..|||||+||+|+|++..... .......
T Consensus 161 ~~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~~~ 239 (366)
T 2zfi_A 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDA-ETNITTE 239 (366)
T ss_dssp TTCSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECT-TTTCEEE
T ss_pred ccCCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccC-CCCccce
Confidence 65 579999999999999999999999999999999999999999999999999999999999998764321 1122345
Q ss_pred EEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC-----------CCCcccCCCCcccccccccC
Q 004378 243 LSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG-----------RNGHINYRDSKLTRMLQPCL 311 (758)
Q Consensus 243 ~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~-----------~~~hIPYRdSKLTrLLqdsL 311 (758)
..|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+|
T Consensus 240 ~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsL 319 (366)
T 2zfi_A 240 KVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319 (366)
T ss_dssp EEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGS
T ss_pred eEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHh
Confidence 6799999999999999999999999999999999999999999999863 34699999999999999999
Q ss_pred CCCcceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceecc
Q 004378 312 GGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (758)
Q Consensus 312 GGNskT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~ 354 (758)
|||++|+|||||||+..+++||++||+||+|||+|+|+|.++.
T Consensus 320 gGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp STTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 9999999999999999999999999999999999999999874
No 11
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=3.4e-85 Score=730.35 Aligned_cols=333 Identities=34% Similarity=0.528 Sum_probs=274.7
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCc-EEEeecCCCC-----------CCCCCcccccCeecCCC-------
Q 004378 20 AREEKILVLVRLRPLSEKEITADEATDWECINDT-TILYRNTLRE-----------GSTFPSAYTFDRVFWGD------- 80 (758)
Q Consensus 20 ~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~-ti~~~~~~~~-----------~s~~~~~F~FD~VF~~~------- 80 (758)
...++|+|+|||||++++|...+..+.+.+.... .+.+..+... .....+.|+||+|||++
T Consensus 35 ~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~ 114 (443)
T 2owm_A 35 DPGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHY 114 (443)
T ss_dssp CCCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTC
T ss_pred CCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccC
Confidence 4567999999999999999888777777665432 3333221100 11235789999999864
Q ss_pred CChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhc----cccceEEEeehh
Q 004378 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH----EERAFVLKFSAM 150 (758)
Q Consensus 81 asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~----~~~~~~V~vS~l 150 (758)
++|++||+.+++|+|+++|+|||+||||||||||||||||+ ||+||++++||..|... ++..|.|+|||+
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~l 194 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYF 194 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEE
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEE
Confidence 89999999999999999999999999999999999999996 59999999999999864 356899999999
Q ss_pred hhhhhhhhcccCCCC-----CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEE
Q 004378 151 EIYNEAIRDLLSTDN-----TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRL 225 (758)
Q Consensus 151 EIYnE~V~DLL~~~~-----~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL 225 (758)
|||||+|+|||++.. ..++|++++.+|++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+|
T Consensus 195 EIYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti 274 (443)
T 2owm_A 195 EVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTI 274 (443)
T ss_dssp EEETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEE
T ss_pred EEECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEE
Confidence 999999999998732 359999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccCCCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCC------------
Q 004378 226 MIESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN------------ 293 (758)
Q Consensus 226 ~Ve~~~~~~~~~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~------------ 293 (758)
+|++..... ..+......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++.
T Consensus 275 ~v~~~~~~~-~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g 353 (443)
T 2owm_A 275 MLKQIHHDL-ETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353 (443)
T ss_dssp EEEEEC--------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC---------------
T ss_pred EEEEeeccc-CCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccccccc
Confidence 998754321 1123345689999999999999999999999999999999999999999999987532
Q ss_pred ---------CcccCCCCcccccccccCCCCcceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceeccc
Q 004378 294 ---------GHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVV 355 (758)
Q Consensus 294 ---------~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~ 355 (758)
.|||||||||||||||+||||++|+|||||||+ +++||++||+||+|||+|+|+|++|++
T Consensus 354 ~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~ 422 (443)
T 2owm_A 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQV 422 (443)
T ss_dssp ----------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC
T ss_pred cccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceeccc
Confidence 399999999999999999999999999999997 599999999999999999999999984
No 12
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=2e-85 Score=718.63 Aligned_cols=334 Identities=36% Similarity=0.565 Sum_probs=282.8
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHH
Q 004378 18 PSAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALS 97 (758)
Q Consensus 18 ~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~ 97 (758)
.....++|+|+|||||++++|...+....+.+.++.++.+..... ....+.|.||+||+++++|++||+.+++|+|++
T Consensus 18 ~~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~ 95 (373)
T 2wbe_C 18 QKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLD--SKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEE 95 (373)
T ss_dssp CCCCCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSS--STTCEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CcCCCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCC--CCCceEEeccEEeccccchhHHHHHHHHHHHHH
Confidence 345567999999999999999887777788888888877754432 234678999999999999999999999999999
Q ss_pred hhcCCCeeEEeeccCCCCcccccC-----------------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcc
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTMT-----------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDL 160 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM~-----------------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DL 160 (758)
+|+|||+||||||||||||||||+ ||+||++++||+.+... +..|.|++||+|||||+|+||
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~v~vS~~EIYnE~i~DL 174 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMM-EVEYTMRISYLELYNEELCDL 174 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHC-CSCEEEEEEEEEEETTEEEES
T ss_pred HhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhc-CceEEEEEEEEEEeCCeEEEC
Confidence 999999999999999999999996 57899999999999764 468999999999999999999
Q ss_pred cCCCC-CCCccccCC--CCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCC
Q 004378 161 LSTDN-TPLRLLDDP--EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 237 (758)
Q Consensus 161 L~~~~-~~l~i~ed~--~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~ 237 (758)
|++.. ..+++++++ .++++|.||+++.|.+++|++++|..|.++|++++|.||..|||||+||+|+|++..... .
T Consensus 175 L~~~~~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~ 252 (373)
T 2wbe_C 175 LSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGI--E 252 (373)
T ss_dssp SCTTSCSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCT--T
T ss_pred CCCCCCCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCC--C
Confidence 98764 467888874 568999999999999999999999999999999999999999999999999998754321 2
Q ss_pred CCceeEEEEEEEEEcCCCcccccccch-hhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcc
Q 004378 238 ENSTTLSASVNFVDLAGSERASQALST-GARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNAR 316 (758)
Q Consensus 238 ~~~~~~~skL~fVDLAGSEr~~~t~s~-g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNsk 316 (758)
.......|+|+|||||||||+.++++. |.|++|+.+||+||++||+||.+|+++. .|||||||||||||||+||||++
T Consensus 253 ~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnsk 331 (373)
T 2wbe_C 253 GEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTK 331 (373)
T ss_dssp TCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSE
T ss_pred CCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCce
Confidence 233456899999999999999999887 9999999999999999999999999864 69999999999999999999999
Q ss_pred eeEEeecCCCcccHHHHHHHHHHHHHhhcccccceeccccC
Q 004378 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMS 357 (758)
Q Consensus 317 T~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~~~s 357 (758)
|+|||||||+..+++||++||+||+|||+|+|+|.+|+..+
T Consensus 332 t~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~~s 372 (373)
T 2wbe_C 332 TSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372 (373)
T ss_dssp EEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEECC
T ss_pred EEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccccC
Confidence 99999999999999999999999999999999999998764
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=9.2e-85 Score=707.11 Aligned_cols=322 Identities=37% Similarity=0.534 Sum_probs=265.2
Q ss_pred hcCCCCCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCc-EEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHH
Q 004378 15 MQAPSAREEKILVLVRLRPLSEKEITADEATDWECINDT-TILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKE 93 (758)
Q Consensus 15 ~~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~-ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~p 93 (758)
|+.|...+.+|+|+|||||++++|...+...++.+.++. .+.+. ..+.|.||+||+++++|++||+.+++|
T Consensus 3 ~~~~~~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~--------~~~~f~FD~Vf~~~~~Q~~vy~~~~~p 74 (344)
T 4a14_A 3 MGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG--------RDRHFGFHVVLAEDAGQEAVYQACVQP 74 (344)
T ss_dssp ------CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET--------TTEEEECSEEECTTCCHHHHHHHHTHH
T ss_pred CCCCCccccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec--------ccceEEEEEEEecCcchhHHHHHHHHH
Confidence 667788899999999999999999877776666655443 33331 246899999999999999999999999
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccC------------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~------------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL 161 (758)
+|+++|+|||+||||||||||||||||. ||+||++++||+.+.......|.|++||+|||||+|+|||
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 154 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLL 154 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHH
Confidence 9999999999999999999999999994 6899999999999998888899999999999999999999
Q ss_pred CCC--CCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccC---
Q 004378 162 STD--NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG--- 236 (758)
Q Consensus 162 ~~~--~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~--- 236 (758)
++. ..++.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.......
T Consensus 155 ~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~ 234 (344)
T 4a14_A 155 EVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPR 234 (344)
T ss_dssp SSCCCGGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC--------
T ss_pred HhccccccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCC
Confidence 854 357999999999999999999999999999999999999999999999999999999999999886432111
Q ss_pred CCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccC--CCCcccCCCCcccccccccCCCC
Q 004378 237 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKG--RNGHINYRDSKLTRMLQPCLGGN 314 (758)
Q Consensus 237 ~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~--~~~hIPYRdSKLTrLLqdsLGGN 314 (758)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ +..|||||||||||||||+||||
T Consensus 235 ~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGn 314 (344)
T 4a14_A 235 PAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGN 314 (344)
T ss_dssp ----CEEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTT
T ss_pred ccccceeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCC
Confidence 1223467899999999999999999999999999999999999999999999874 34699999999999999999999
Q ss_pred cceeEEeecCCCcccHHHHHHHHHHHHHhh
Q 004378 315 ARTAIICTLSPARSHVEQTRNTLLFACCAK 344 (758)
Q Consensus 315 skT~mIatISPs~~~~eETlsTLrFA~rAk 344 (758)
++|+|||||||+..+++||++||+||+|||
T Consensus 315 skt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 999999999999999999999999999996
No 14
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.9e-85 Score=709.27 Aligned_cols=323 Identities=35% Similarity=0.516 Sum_probs=260.6
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCC----------------CCCCCcccccCeecCCCCChh
Q 004378 21 REEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLRE----------------GSTFPSAYTFDRVFWGDCSTT 84 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~----------------~s~~~~~F~FD~VF~~~asQ~ 84 (758)
-.++|+|+|||||++.+|...+...++.+.++.++++...... .......|.||+||+++++|+
T Consensus 8 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~ 87 (355)
T 3lre_A 8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQS 87 (355)
T ss_dssp ----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHH
T ss_pred ccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChH
Confidence 3578999999999999999988888888888777665432110 012345799999999999999
Q ss_pred HHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhh
Q 004378 85 QVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAI 157 (758)
Q Consensus 85 eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V 157 (758)
+||+.+++|+|+++|+|||+||||||||||||||||+ ||+|+++.+||..+.... ...|.|.+||+|||||+|
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i 167 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQI 167 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEE
Confidence 9999999999999999999999999999999999996 589999999999998654 567999999999999999
Q ss_pred hcccCCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCC
Q 004378 158 RDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGK 237 (758)
Q Consensus 158 ~DLL~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~ 237 (758)
+|||.+ ..++.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.+|+.|||||+||+|+|++..... .
T Consensus 168 ~DLL~~-~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~--~ 244 (355)
T 3lre_A 168 RDLLVN-SGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTA--S 244 (355)
T ss_dssp EESSSC-CCCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTS--C
T ss_pred EECcCC-CCCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCC--C
Confidence 999975 4679999999999999999999999999999999999999999999999999999999999998864321 2
Q ss_pred CCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCC--CCcccCCCCcccccccccCCCCc
Q 004378 238 ENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNA 315 (758)
Q Consensus 238 ~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~--~~hIPYRdSKLTrLLqdsLGGNs 315 (758)
.......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+|||||
T Consensus 245 ~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGns 324 (355)
T 3lre_A 245 INQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNC 324 (355)
T ss_dssp TTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTS
T ss_pred CCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCc
Confidence 2234567999999999999999999999999999999999999999999998753 46999999999999999999999
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhcc
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~I 346 (758)
+|+|||||||+..+++||++||+||+|||+|
T Consensus 325 kt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 15
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.7e-83 Score=697.75 Aligned_cols=322 Identities=34% Similarity=0.550 Sum_probs=258.3
Q ss_pred CCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCC----CCCCCCCcccccCeecC--------CCCChhHHHhhh
Q 004378 23 EKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTL----REGSTFPSAYTFDRVFW--------GDCSTTQVYEDG 90 (758)
Q Consensus 23 e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~----~~~s~~~~~F~FD~VF~--------~~asQ~eVy~~~ 90 (758)
.+|+|+|||||++++|...+..+.+.+.+..+++..... ......++.|.||+||| +.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 379999999999999998888777777666544322110 11223467899999995 457899999999
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhc--cccceEEEeehhhhhhhhhhcccC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDLLS 162 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~--~~~~~~V~vS~lEIYnE~V~DLL~ 162 (758)
+.|+|+++|+|||+||||||||||||||||+ ||+||++.+||..+... ....|.|+|||+|||||+|+|||+
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999996 59999999999999753 356799999999999999999998
Q ss_pred CCC--CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCc
Q 004378 163 TDN--TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240 (758)
Q Consensus 163 ~~~--~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~ 240 (758)
+.. .++++++++.+|++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++..... ..+..
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~-~~~~~ 239 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDV-KSGTS 239 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECT-TSCEE
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEeccc-CCCCC
Confidence 753 589999999999999999999999999999999999999999999999999999999999998754321 12233
Q ss_pred eeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhcc-----CCCCcccCCCCcccccccccCCCCc
Q 004378 241 TTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSK-----GRNGHINYRDSKLTRMLQPCLGGNA 315 (758)
Q Consensus 241 ~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~-----~~~~hIPYRdSKLTrLLqdsLGGNs 315 (758)
....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++ ++..|||||||||||||||+||||+
T Consensus 240 ~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGns 319 (354)
T 3gbj_A 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNS 319 (354)
T ss_dssp EEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTC
T ss_pred CeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCC
Confidence 46789999999999999999999999999999999999999999999985 3456999999999999999999999
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhc
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKE 345 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~ 345 (758)
+|+|||||||+..+++||++||+||.||+.
T Consensus 320 kt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 320 KTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp EEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999985
No 16
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=7e-83 Score=699.91 Aligned_cols=319 Identities=32% Similarity=0.467 Sum_probs=262.9
Q ss_pred CCCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCC----CCCCcccccCeecCCCCChhHHHhhhhHHH
Q 004378 19 SAREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREG----STFPSAYTFDRVFWGDCSTTQVYEDGAKEI 94 (758)
Q Consensus 19 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~----s~~~~~F~FD~VF~~~asQ~eVy~~~v~pl 94 (758)
....++|+|+|||||++++|...+....+.+.++.++++..+.... ....+.|.||+||+++++|++||+.+++|+
T Consensus 47 ~~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~pl 126 (387)
T 2heh_A 47 PIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPL 126 (387)
T ss_dssp CCCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHH
Confidence 3457899999999999999998877777777777777665432111 012368999999999999999999999999
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC------------CCcchHHHHHHHHHhc--cccceEEEeehhhhhhhhhhcc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG------------ITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDL 160 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G------------ii~rav~dLF~~i~~~--~~~~~~V~vS~lEIYnE~V~DL 160 (758)
|+++|+|||+||||||||||||||||.| |+|+++++||..+... ....|.|++||+|||||+|+||
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DL 206 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDL 206 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEET
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEEC
Confidence 9999999999999999999999999976 7899999999999754 3568999999999999999999
Q ss_pred cCCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCc
Q 004378 161 LSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENS 240 (758)
Q Consensus 161 L~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~ 240 (758)
|++. ..+.+++++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++.
T Consensus 207 L~~~-~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~---------- 275 (387)
T 2heh_A 207 LNKK-AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK---------- 275 (387)
T ss_dssp TTTT-EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS----------
T ss_pred CCCC-ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC----------
Confidence 9864 57999999999999999999999999999999999999999999999999999999999999764
Q ss_pred eeEEEEEEEEEcCCCccccccc-chhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCccccccccc-CCCCccee
Q 004378 241 TTLSASVNFVDLAGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC-LGGNARTA 318 (758)
Q Consensus 241 ~~~~skL~fVDLAGSEr~~~t~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqds-LGGNskT~ 318 (758)
....++|+|||||||||+.+++ +.+.+++|+++||+||++||+||.+|+++ ..|||||||||||||||+ ||||++|+
T Consensus 276 ~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hvPYRdSKLTrlLqdsllGgnskT~ 354 (387)
T 2heh_A 276 GRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTC 354 (387)
T ss_dssp SSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTGGGGSSTTEEEE
T ss_pred CeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcC-CCCCCccccHHHHHHhhhccCCCCeEE
Confidence 1367999999999999998876 45678899999999999999999999985 469999999999999999 69999999
Q ss_pred EEeecCCCcccHHHHHHHHHHHHHhhccccc
Q 004378 319 IICTLSPARSHVEQTRNTLLFACCAKEVTTK 349 (758)
Q Consensus 319 mIatISPs~~~~eETlsTLrFA~rAk~Ikn~ 349 (758)
|||||||+..+++||++||+||+|||+|++.
T Consensus 355 mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 355 MIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp EEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred EEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999999865
No 17
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.1e-82 Score=684.95 Aligned_cols=314 Identities=32% Similarity=0.526 Sum_probs=267.8
Q ss_pred CCCeEEEEEcCCCCchhhhcCCC-CceEee--CCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHHh
Q 004378 22 EEKILVLVRLRPLSEKEITADEA-TDWECI--NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSV 98 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~-~~~~~~--~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~v 98 (758)
.++|+|+|||||++++|...... ..+.+. ++..+..... ..++.|.||+||+++++|++||+. +.|+|+++
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~ 76 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-----GKPVSFELDKVFSPQASQQDVFQE-VQALVTSC 76 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-----TEEEEEECSEEECTTCCHHHHHTT-THHHHHHH
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-----CCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHH
Confidence 57899999999999998654332 223332 2333333221 124689999999999999999998 58999999
Q ss_pred hcCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhcc-ccceEEEeehhhhhhhhhhcccCCCCC---CC
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE-ERAFVLKFSAMEIYNEAIRDLLSTDNT---PL 168 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~-~~~~~V~vS~lEIYnE~V~DLL~~~~~---~l 168 (758)
++|||+||||||||||||||||+ ||+||++++||..+.... +..|.|++||+|||||+|+|||++... .+
T Consensus 77 l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i 156 (330)
T 2h58_A 77 IDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEI 156 (330)
T ss_dssp HTTCCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCC
T ss_pred hCCCEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceE
Confidence 99999999999999999999997 599999999999998643 568999999999999999999986542 35
Q ss_pred ccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEE
Q 004378 169 RLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVN 248 (758)
Q Consensus 169 ~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~ 248 (758)
++.+++.++++|.||+++.|.+++|++++|..|.++|++++|.+|..|||||+||+|+|++... .......|+|+
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~skL~ 231 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC-----STGLRTTGKLN 231 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEET-----TTTEEEEEEEE
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEec-----CCCcEEEEEEE
Confidence 5557889999999999999999999999999999999999999999999999999999987532 23356789999
Q ss_pred EEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcc
Q 004378 249 FVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARS 328 (758)
Q Consensus 249 fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~ 328 (758)
|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+||||++|+|||||||+..
T Consensus 232 lVDLAGSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~-~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~ 310 (330)
T 2h58_A 232 LVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSR-QGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEK 310 (330)
T ss_dssp EEECCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGG
T ss_pred EEeCCCCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcC-CCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999985 469999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhccc
Q 004378 329 HVEQTRNTLLFACCAKEVT 347 (758)
Q Consensus 329 ~~eETlsTLrFA~rAk~Ik 347 (758)
+++||++||+||+|||+|+
T Consensus 311 ~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 311 NTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp GHHHHHHHHHHHHHHC---
T ss_pred cHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999986
No 18
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=8e-83 Score=694.72 Aligned_cols=318 Identities=32% Similarity=0.475 Sum_probs=255.1
Q ss_pred CCCCCCeEEEEEcCCCCchhhhcCCCCceEee-CCcEEEeecCCC------CCCCCCcccccCeecCCCCChhHHHhhhh
Q 004378 19 SAREEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLR------EGSTFPSAYTFDRVFWGDCSTTQVYEDGA 91 (758)
Q Consensus 19 ~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~------~~s~~~~~F~FD~VF~~~asQ~eVy~~~v 91 (758)
.+..++|+|||||||+++.|.. .+... +..+|.+..... ........|.||+||+ +++|++||+.++
T Consensus 20 ~~~~~~i~V~vRvRP~~~~e~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~ 93 (359)
T 3nwn_A 20 MGTRKKVHAFVRVKPTDDFAHE-----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVA 93 (359)
T ss_dssp ----CCEEEEEEECCCSSCCTT-----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHT
T ss_pred CCCCCCEEEEEEcCCCCccccc-----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHH
Confidence 3556899999999999876632 22332 344555543321 1223346799999997 589999999999
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhcccC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLLS 162 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL~ 162 (758)
+|+|+++|+|||+||||||||||||||||+ ||+||++++||+.+...++..|.|++||+|||||+|+|||+
T Consensus 94 ~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 173 (359)
T 3nwn_A 94 KDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173 (359)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTS
T ss_pred HHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEeccccccccc
Confidence 999999999999999999999999999996 58999999999999998899999999999999999999997
Q ss_pred CCC------CCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccC
Q 004378 163 TDN------TPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLG 236 (758)
Q Consensus 163 ~~~------~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~ 236 (758)
+.. ..+.+++++ .|++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++....
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~--- 249 (359)
T 3nwn_A 174 TLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT--- 249 (359)
T ss_dssp SSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC------
T ss_pred cccccccccccceEEecC-CceEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeeccc---
Confidence 532 346667665 5799999999999999999999999999999999999999999999999999876432
Q ss_pred CCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcc
Q 004378 237 KENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNAR 316 (758)
Q Consensus 237 ~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNsk 316 (758)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||+
T Consensus 250 ~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnsk 329 (359)
T 3nwn_A 250 LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329 (359)
T ss_dssp ----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSE
T ss_pred ccCcccccccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCcc
Confidence 22334578999999999999999999999999999999999999999999999877789999999999999999999999
Q ss_pred eeEEeecCCCcccHHHHHHHHHHHHHhhcc
Q 004378 317 TAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (758)
Q Consensus 317 T~mIatISPs~~~~eETlsTLrFA~rAk~I 346 (758)
|+|||||||+..+++||++||+||+|||+|
T Consensus 330 t~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 330 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred EEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999987
No 19
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-82 Score=693.70 Aligned_cols=322 Identities=32% Similarity=0.431 Sum_probs=273.2
Q ss_pred CeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCC----CCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 24 KILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREG----STFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 24 ~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~----s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
+|+|+|||||++++|...+....+.+.++.++.+..+.... ....+.|.||+||+++++|++||+.+++|+|++++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 59999999999999998888888888888887765431100 01235899999999999999999999999999999
Q ss_pred c-CCCeeEEeeccCCCCcccccC-----------CCCcchHHHHHHHHHhc-cccceEEEeehhhhhhhhhhcccCCCCC
Q 004378 100 S-GINSSIFAYGQTSSGKTYTMT-----------GITECTVADIFDYIHRH-EERAFVLKFSAMEIYNEAIRDLLSTDNT 166 (758)
Q Consensus 100 ~-G~N~tIfAYGqTGSGKTyTM~-----------Gii~rav~dLF~~i~~~-~~~~~~V~vS~lEIYnE~V~DLL~~~~~ 166 (758)
+ |||+||||||||||||||||+ ||+|+++.+||..+... .+..|.|++||+|||||+|+|||.+. .
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~-~ 159 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR-K 159 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC-c
Confidence 6 999999999999999999995 47899999999999864 45689999999999999999999764 4
Q ss_pred CCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEE
Q 004378 167 PLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSAS 246 (758)
Q Consensus 167 ~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~sk 246 (758)
.+.+++++.++++|.||+++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|+|++.. .....|+
T Consensus 160 ~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~--------~~~~~sk 231 (360)
T 1ry6_A 160 MVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN--------KNTSLGK 231 (360)
T ss_dssp ---------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT--------TTEEEEE
T ss_pred cceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc--------CCcceeE
Confidence 67788999999999999999999999999999999999999999999999999999999998642 1256799
Q ss_pred EEEEEcCCCcccccccchh-hhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCC
Q 004378 247 VNFVDLAGSERASQALSTG-ARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSP 325 (758)
Q Consensus 247 L~fVDLAGSEr~~~t~s~g-~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISP 325 (758)
|+|||||||||+.++++.| .+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+||||++|+|||||||
T Consensus 232 L~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP 310 (360)
T 1ry6_A 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISP 310 (360)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECC
T ss_pred EEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCC
Confidence 9999999999999998876 578999999999999999999998754 69999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHhhcccccceeccc
Q 004378 326 ARSHVEQTRNTLLFACCAKEVTTKAQVNVV 355 (758)
Q Consensus 326 s~~~~eETlsTLrFA~rAk~Ikn~~~vN~~ 355 (758)
+..+++||++||+||+|||+|+|.|..|..
T Consensus 311 ~~~~~~ETlsTLrfA~rak~i~n~~~~~~~ 340 (360)
T 1ry6_A 311 TISCCEQTLNTLRYSSRVKNKGNSKLEGKP 340 (360)
T ss_dssp BGGGHHHHHHHHHHHHHHCC----------
T ss_pred CcccHHHHHHHHHHHHHHhhcccCcccCCC
Confidence 999999999999999999999996665543
No 20
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=2.1e-82 Score=689.70 Aligned_cols=321 Identities=31% Similarity=0.460 Sum_probs=257.6
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCC----cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHHHH
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECIND----TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALS 97 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~----~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~ 97 (758)
.++|+|+|||||+++.|...+....+...++ .++.+... .+...++.|.||+||+++++|++||+. +.|+|++
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~ 80 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRN--EGRILSYNFQFDMIFEPSHTNKEIFEE-IRQLVQS 80 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEEC--C--CEEEEEEESEEECTTCCHHHHHHH-HHHHHHG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCC--CCcccceeeecCEEECCCccHHHHHHH-HHHHHHH
Confidence 4789999999999999876544433332221 23443322 222335689999999999999999998 5799999
Q ss_pred hhcCCCeeEEeeccCCCCcccccC----CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCCC------
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDN------ 165 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM~----Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~~------ 165 (758)
+++|||+||||||||||||||||+ ||+|+++++||+.+.... ...|.|++||+|||||+|+|||.+..
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCCCCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 999999999999999999999995 799999999999998644 45899999999999999999998643
Q ss_pred -----CCCccccCC-CCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCC
Q 004378 166 -----TPLRLLDDP-EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (758)
Q Consensus 166 -----~~l~i~ed~-~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~ 239 (758)
..+.+++++ .+|++|.||+++.|.++++++.+|..|.++|++++|.+|+.|||||+||+|+|++... ..
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~ 235 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNL-----HT 235 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEET-----TT
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEec-----CC
Confidence 456677665 4579999999999999999999999999999999999999999999999999987643 22
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCC--CcccCCCCcccccccccCCCCcce
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN--GHINYRDSKLTRMLQPCLGGNART 317 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~--~hIPYRdSKLTrLLqdsLGGNskT 317 (758)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.+.. .|||||||||||||||+||||++|
T Consensus 236 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt 315 (349)
T 3t0q_A 236 GETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKT 315 (349)
T ss_dssp CCEEEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEE
T ss_pred CCeeEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceE
Confidence 345689999999999999999999999999999999999999999999987543 599999999999999999999999
Q ss_pred eEEeecCCCcccHHHHHHHHHHHHHhhcccccc
Q 004378 318 AIICTLSPARSHVEQTRNTLLFACCAKEVTTKA 350 (758)
Q Consensus 318 ~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~ 350 (758)
+|||||||+..+++||++||+||+|++.|+..+
T Consensus 316 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 316 LMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999999998653
No 21
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=2.2e-82 Score=700.05 Aligned_cols=320 Identities=32% Similarity=0.458 Sum_probs=264.0
Q ss_pred CCCCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCCC----CCCCcccccCeecCCCCChhHHHhhhhHHHH
Q 004378 20 AREEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLREG----STFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (758)
Q Consensus 20 ~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~~----s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV 95 (758)
...++|+|+|||||++++|...+....+.+.++.++++..+.... ....+.|.||+||+++++|++||+.+++|+|
T Consensus 68 ~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV 147 (410)
T 1v8k_A 68 IEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 147 (410)
T ss_dssp TSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHH
Confidence 347899999999999999988877777777777777665432111 0123689999999999999999999999999
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccCC------------CCcchHHHHHHHHHhc--cccceEEEeehhhhhhhhhhccc
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMTG------------ITECTVADIFDYIHRH--EERAFVLKFSAMEIYNEAIRDLL 161 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~G------------ii~rav~dLF~~i~~~--~~~~~~V~vS~lEIYnE~V~DLL 161 (758)
+++|+|||+||||||||||||||||+| |+|+++.+||..+... ....|.|++||+|||||+|+|||
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL 227 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL 227 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECC
Confidence 999999999999999999999999976 7899999999999754 35689999999999999999999
Q ss_pred CCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCce
Q 004378 162 STDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENST 241 (758)
Q Consensus 162 ~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~ 241 (758)
++. ..+.+++++.++++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++. .
T Consensus 228 ~~~-~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----------~ 296 (410)
T 1v8k_A 228 NKK-AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK----------G 296 (410)
T ss_dssp TTT-EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS----------S
T ss_pred CCC-CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC----------C
Confidence 864 57899999999999999999999999999999999999999999999999999999999999764 1
Q ss_pred eEEEEEEEEEcCCCccccccc-chhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCccccccccc-CCCCcceeE
Q 004378 242 TLSASVNFVDLAGSERASQAL-STGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPC-LGGNARTAI 319 (758)
Q Consensus 242 ~~~skL~fVDLAGSEr~~~t~-s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqds-LGGNskT~m 319 (758)
...|+|+|||||||||+.+++ +.|.+++|+++||+||++||+||.+|+++ ..|||||||||||||||+ |||||+|+|
T Consensus 297 ~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~-~~hIPYRdSKLTrLLqdsllGgnskT~m 375 (410)
T 1v8k_A 297 RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCM 375 (410)
T ss_dssp SEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEE
T ss_pred cceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcC-CCCCCcccchhHHHHhhcccCCCceEEE
Confidence 367999999999999998876 46778899999999999999999999975 469999999999999999 699999999
Q ss_pred EeecCCCcccHHHHHHHHHHHHHhhcccccce
Q 004378 320 ICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (758)
Q Consensus 320 IatISPs~~~~eETlsTLrFA~rAk~Ikn~~~ 351 (758)
||||||+..+++||++||+||.|||.|..+|.
T Consensus 376 Ia~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 376 IAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred EEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999987764
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.5e-82 Score=692.31 Aligned_cols=319 Identities=32% Similarity=0.451 Sum_probs=246.4
Q ss_pred CCCCeEEEEEcCCCCchhhhcCCCCc-eEe------eCCcEEEeecCCC--------CCCCCCcccccCeecCCCCChhH
Q 004378 21 REEKILVLVRLRPLSEKEITADEATD-WEC------INDTTILYRNTLR--------EGSTFPSAYTFDRVFWGDCSTTQ 85 (758)
Q Consensus 21 ~~e~IrV~VRVRPl~~~E~~~~~~~~-~~~------~~~~ti~~~~~~~--------~~s~~~~~F~FD~VF~~~asQ~e 85 (758)
-.++|+|+|||||++++|...+.... +.. .++.++.+..+.. ......+.|.||+||+++++|++
T Consensus 20 ~~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~ 99 (376)
T 2rep_A 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSGQDE 99 (376)
T ss_dssp ---CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEECSEEECTTCCHHH
T ss_pred cCCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeecEEcCCcccchh
Confidence 35789999999999999976543211 111 2345555543110 01123468999999999999999
Q ss_pred HHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC----------CCcchHHHHHHHHHhcc--ccceEEEeehhhhh
Q 004378 86 VYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG----------ITECTVADIFDYIHRHE--ERAFVLKFSAMEIY 153 (758)
Q Consensus 86 Vy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G----------ii~rav~dLF~~i~~~~--~~~~~V~vS~lEIY 153 (758)
||+.+ .|+|+++|+|||+||||||||||||||||+| |+||++++||+.+.... ...|.|++||+|||
T Consensus 100 Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIY 178 (376)
T 2rep_A 100 VFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178 (376)
T ss_dssp HHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEE
T ss_pred hhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEE
Confidence 99985 5899999999999999999999999999974 89999999999998643 46899999999999
Q ss_pred hhhhhcccCCC-----CCCCccccC--CCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEE
Q 004378 154 NEAIRDLLSTD-----NTPLRLLDD--PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLM 226 (758)
Q Consensus 154 nE~V~DLL~~~-----~~~l~i~ed--~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~ 226 (758)
||+|+|||++. ...+.++++ +.++++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+
T Consensus 179 nE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~ 258 (376)
T 2rep_A 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQ 258 (376)
T ss_dssp TTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEE
T ss_pred CCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEE
Confidence 99999999875 246788887 67899999999999999999999999999999999999999999999999999
Q ss_pred EEeecccccCCCCceeEEEEEEEEEcCCCcccccccchh----hhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCc
Q 004378 227 IESSAREFLGKENSTTLSASVNFVDLAGSERASQALSTG----ARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSK 302 (758)
Q Consensus 227 Ve~~~~~~~~~~~~~~~~skL~fVDLAGSEr~~~t~s~g----~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSK 302 (758)
|++... .......++|+|||||||||+.++++.| .|++|+.+||+||++||+||.+|+++ ..||||||||
T Consensus 259 v~~~~~-----~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~-~~hVPYRdSk 332 (376)
T 2rep_A 259 ISGEHS-----SRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK-ESHVPYRNSK 332 (376)
T ss_dssp EEEEES-----SSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTT-CSCCCGGGSH
T ss_pred EEEEec-----CCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC-CCccCCcCCH
Confidence 987542 2234567999999999999999999999 99999999999999999999999985 4699999999
Q ss_pred ccccccccCCCCcceeEEeecCCCcccHHHHHHHHHHHHHhhcc
Q 004378 303 LTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (758)
Q Consensus 303 LTrLLqdsLGGNskT~mIatISPs~~~~eETlsTLrFA~rAk~I 346 (758)
|||||||+||||++|+|||||||+..+++||++||+||+|++++
T Consensus 333 LT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 333 LTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp HHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999864
No 23
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=2.2e-82 Score=688.89 Aligned_cols=320 Identities=32% Similarity=0.474 Sum_probs=261.9
Q ss_pred CCCeEEEEEcCCCCc-hhhhcCCCCceEee--C----CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHH
Q 004378 22 EEKILVLVRLRPLSE-KEITADEATDWECI--N----DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEI 94 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~-~E~~~~~~~~~~~~--~----~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~pl 94 (758)
.++|+|+|||||+++ .|. .....+.+. + ..++.+... ......+.|.||+||+++++|++||+. +.|+
T Consensus 2 k~nIrV~vRvRP~~~~~e~--~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~l 76 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLEN--SDTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQL 76 (347)
T ss_dssp -CEEEEEEEECCCCTTTCC--CTTEEEEECCCBTTTTBEEEEEEEG--GGTTCEEEEEESEEECTTCCHHHHHHH-HHHH
T ss_pred CCCeEEEEEeCCCCccccc--CCCceEEEecccCCCCceEEEEecC--CCCcCceEEeeCEEECCCCCHHHHHHH-HHHH
Confidence 368999999999987 442 222222221 1 123444332 122235789999999999999999998 5699
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccC----CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCCCC--
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDNT-- 166 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~----Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~~~-- 166 (758)
|+++|+|||+||||||||||||||||+ ||+||++++||..+.... ...|.|++||+|||||+|+|||++...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~G~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 156 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNK 156 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHHSTTTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC------
T ss_pred HHHhcCCceeEEEEECCCCCCCcEeccCCCCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccc
Confidence 999999999999999999999999995 799999999999998643 468999999999999999999987643
Q ss_pred -------CCccccC-CCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCC
Q 004378 167 -------PLRLLDD-PEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKE 238 (758)
Q Consensus 167 -------~l~i~ed-~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~ 238 (758)
.+.++++ ..++++|.||+++.|.++++++.+|..|.++|++++|.||..|||||+||+|+|++... .
T Consensus 157 ~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~ 231 (347)
T 1f9v_A 157 EDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNA-----K 231 (347)
T ss_dssp -------CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC------
T ss_pred cccccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecC-----C
Confidence 4667765 46789999999999999999999999999999999999999999999999999987532 2
Q ss_pred CceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCC--CCcccCCCCcccccccccCCCCcc
Q 004378 239 NSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGR--NGHINYRDSKLTRMLQPCLGGNAR 316 (758)
Q Consensus 239 ~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~--~~hIPYRdSKLTrLLqdsLGGNsk 316 (758)
......|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++ ..|||||||||||||||+||||++
T Consensus 232 ~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnsk 311 (347)
T 1f9v_A 232 TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 311 (347)
T ss_dssp -CCEEEEEEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCE
T ss_pred CCceeeeEEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCcc
Confidence 234578999999999999999999999999999999999999999999998765 469999999999999999999999
Q ss_pred eeEEeecCCCcccHHHHHHHHHHHHHhhcccccce
Q 004378 317 TAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (758)
Q Consensus 317 T~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~ 351 (758)
|+|||||||+..+++||++||+||+||+.|+..++
T Consensus 312 t~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 312 TLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp EEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred EEEEEEeCCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999998764
No 24
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=8.3e-82 Score=686.51 Aligned_cols=319 Identities=32% Similarity=0.472 Sum_probs=257.3
Q ss_pred CCCCCCCeEEEEEcCCCCchhhhcCCCCceEee-CCcEEEeecCCCC------CCCCCcccccCeecCCCCChhHHHhhh
Q 004378 18 PSAREEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLRE------GSTFPSAYTFDRVFWGDCSTTQVYEDG 90 (758)
Q Consensus 18 ~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~------~s~~~~~F~FD~VF~~~asQ~eVy~~~ 90 (758)
+.+..++|+|+|||||+.+.+ ...+.+. +..++.+...... .......|.||+||+ +++|++||+.+
T Consensus 18 ~~~~~g~IrV~vRvRP~~~~~-----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~ 91 (358)
T 2nr8_A 18 GSGTRKKVHAFVRVKPTDDFA-----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETV 91 (358)
T ss_dssp -----CCEEEEEEECCCSSCC-----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHH
T ss_pred CCCCCCCeEEEEEcCCCCCCc-----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHH
Confidence 345578999999999986543 2334443 3445555433211 122345799999995 88999999999
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC---------CCCcchHHHHHHHHHhccccceEEEeehhhhhhhhhhccc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT---------GITECTVADIFDYIHRHEERAFVLKFSAMEIYNEAIRDLL 161 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~---------Gii~rav~dLF~~i~~~~~~~~~V~vS~lEIYnE~V~DLL 161 (758)
++|+|+++++|||+||||||||||||||||+ ||+||++++||+.++...+..|.|++||+|||||+|+|||
T Consensus 92 ~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL 171 (358)
T 2nr8_A 92 AKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLL 171 (358)
T ss_dssp THHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETT
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECc
Confidence 9999999999999999999999999999995 6899999999999999888899999999999999999999
Q ss_pred CCC------CCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeeccccc
Q 004378 162 STD------NTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 235 (758)
Q Consensus 162 ~~~------~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~ 235 (758)
++. ..++.+++++ .|++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++....
T Consensus 172 ~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~-- 248 (358)
T 2nr8_A 172 STLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRT-- 248 (358)
T ss_dssp SSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-----
T ss_pred CCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEecc--
Confidence 863 3578899998 7899999999999999999999999999999999999999999999999999876432
Q ss_pred CCCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCc
Q 004378 236 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNA 315 (758)
Q Consensus 236 ~~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNs 315 (758)
........|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|++++..|||||||||||||||+|||||
T Consensus 249 -~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 249 -LSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSS
T ss_pred -CCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 1223456899999999999999999999999999999999999999999999987778999999999999999999999
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhcc
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEV 346 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~I 346 (758)
+|+|||||||+..+++||++||+||+|||.|
T Consensus 328 kt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 328 NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=3.3e-80 Score=684.70 Aligned_cols=323 Identities=35% Similarity=0.526 Sum_probs=265.3
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEeeCCcEEEeecCCCC--CCCCCcccccCeecCCCCChhHHHhhhhHHHHHHhh
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECINDTTILYRNTLRE--GSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVV 99 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~~~ti~~~~~~~~--~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl 99 (758)
.++|+|+|||||+++.|... ..+.|...++.++.+...... .....+.|.||+||+++++|++||+. +.|+|+++|
T Consensus 58 ~gnIrV~vRvRP~~~~E~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l 135 (412)
T 3u06_A 58 RDNIRVFCRIRPPLESEENR-MCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSAL 135 (412)
T ss_dssp TCSEEEEEEECCCCGGGTTS-CBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHH
T ss_pred CCCEEEEEEcCCCCchhccC-cceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHH
Confidence 47899999999999998643 345577777777776543211 12235789999999999999999986 679999999
Q ss_pred cCCCeeEEeeccCCCCcccccC------CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCCCCCCc--
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT------GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDNTPLR-- 169 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~------Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~~~~l~-- 169 (758)
+|||+||||||||||||||||+ ||+|+++.+||..|.... ...|.|++||+|||||+|+|||++....+.
T Consensus 136 ~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~i~ 215 (412)
T 3u06_A 136 DGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIR 215 (412)
T ss_dssp TTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCCCCCEE
T ss_pred CCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCCCceee
Confidence 9999999999999999999996 699999999999998643 568999999999999999999988776554
Q ss_pred cccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEE
Q 004378 170 LLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNF 249 (758)
Q Consensus 170 i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~f 249 (758)
+.+++.++++|.||+++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+... .......|+|+|
T Consensus 216 ~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~~~~~~~kL~l 290 (412)
T 3u06_A 216 MAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHA-----EKQEISVGSINL 290 (412)
T ss_dssp ECSSCTTSEEETTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEET-----TTTEEEEEEEEE
T ss_pred eeecCCCCEEEcceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeC-----CCCCEEEEEEEE
Confidence 457788999999999999999999999999999999999999999999999999999987542 234467899999
Q ss_pred EEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCccc
Q 004378 250 VDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSH 329 (758)
Q Consensus 250 VDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~ 329 (758)
||||||||.. .|.|++|+.+||+||++||+||.+|+++ ..|||||||||||||||+|||||+|+|||||||+..+
T Consensus 291 VDLAGSEr~~----~~~rl~E~~~INkSL~aLg~vI~aL~~~-~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~ 365 (412)
T 3u06_A 291 VDLAGSESPK----TSTRMTETKNINRSLSELTNVILALLQK-QDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDC 365 (412)
T ss_dssp EECCCCCC--------------CTTTHHHHHHHHHHHHHHTT-CSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGG
T ss_pred EECCCCCcCC----ccchhHhHHHHhHHHHHHHHHHHHHhcc-CCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhh
Confidence 9999999975 4689999999999999999999999985 4699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccc-cceecccc
Q 004378 330 VEQTRNTLLFACCAKEVTT-KAQVNVVM 356 (758)
Q Consensus 330 ~eETlsTLrFA~rAk~Ikn-~~~vN~~~ 356 (758)
++||++||+||+|++.|+. +++.|...
T Consensus 366 ~~ETl~TLrfA~rv~~i~~~~~~~n~~~ 393 (412)
T 3u06_A 366 FQESVKSLRFAASVNSCKMTKAKRNRYL 393 (412)
T ss_dssp HHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHHHhhcccccccccccC
Confidence 9999999999999999984 45555443
No 26
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2.9e-80 Score=671.24 Aligned_cols=310 Identities=28% Similarity=0.409 Sum_probs=241.8
Q ss_pred hhcCCCCCCCCeEEEEEcCCCCchhhhcCCCCceEeeC---CcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhh
Q 004378 14 KMQAPSAREEKILVLVRLRPLSEKEITADEATDWECIN---DTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDG 90 (758)
Q Consensus 14 ~~~~~~~~~e~IrV~VRVRPl~~~E~~~~~~~~~~~~~---~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~ 90 (758)
+.....+..++|+|+|||||+++.|. .++...+.+.. ...+.+. .+.|.||+||+++++|++||+.+
T Consensus 13 ~r~m~~~~~~~VrV~vRvRP~~~~e~-~~~~~~v~~~~~~~~~~~~~~---------~~~F~FD~Vf~~~~sQ~~Vy~~~ 82 (344)
T 3dc4_A 13 RRGMEGAKLSAVRIAVREAPYRQFLG-RREPSVVQFPPWSDGKSLIVD---------QNEFHFDHAFPATISQDEMYQAL 82 (344)
T ss_dssp ------CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEET---------TEEEECSEEECTTCCHHHHHHHH
T ss_pred cCCCCCCCCCCeEEEEECCCCCcccc-cCCceEEEecCCCCCceEEec---------CcEEEcceEECCCCCHHHHHHhh
Confidence 34455567889999999999998773 34444555443 3344331 36899999999999999999999
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC------------CCCcchHHHHHHHHHhccc---cceEEEeehhhhhhh
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT------------GITECTVADIFDYIHRHEE---RAFVLKFSAMEIYNE 155 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~------------Gii~rav~dLF~~i~~~~~---~~~~V~vS~lEIYnE 155 (758)
++|+|+++|+|||+||||||||||||||||. ||+||++++||+.+....+ ..|.|++||+|||||
T Consensus 83 ~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE 162 (344)
T 3dc4_A 83 ILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162 (344)
T ss_dssp THHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESS
T ss_pred ccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCC
Confidence 9999999999999999999999999999995 7999999999999986543 469999999999999
Q ss_pred hhhcccCCCCCCCccccCCCCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeeccccc
Q 004378 156 AIRDLLSTDNTPLRLLDDPEKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFL 235 (758)
Q Consensus 156 ~V~DLL~~~~~~l~i~ed~~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~ 235 (758)
+|+|||++......+ +..+.+++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|++.
T Consensus 163 ~i~DLL~~~~~~~~~------~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~----- 231 (344)
T 3dc4_A 163 KPFDLLGSTPHMPMV------AARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSK----- 231 (344)
T ss_dssp CEEETTSSCTTSBCC------SSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECS-----
T ss_pred eeEEccCCCCCCccc------cccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEec-----
Confidence 999999876532221 122458999999999999999999999999999999999999999999999753
Q ss_pred CCCCceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCc
Q 004378 236 GKENSTTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNA 315 (758)
Q Consensus 236 ~~~~~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNs 315 (758)
...|+|+|||||||||+.++++.|.+++|+.+||+||++||+||.+|+.++ .|||||||||||||||+||||+
T Consensus 232 ------~~~skl~lVDLAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGns 304 (344)
T 3dc4_A 232 ------THHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQS 304 (344)
T ss_dssp ------SCEEEEEEEECCCCCCC-------------CCSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTC
T ss_pred ------CcEEEEEEEECCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCC
Confidence 246899999999999999999999999999999999999999999999865 5999999999999999999999
Q ss_pred ceeEEeecCCCcccHHHHHHHHHHHHHhhcccccce
Q 004378 316 RTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (758)
Q Consensus 316 kT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~ 351 (758)
+|+|||||||+..+++||++||+||+||++....|.
T Consensus 305 kt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 305 YLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp EEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC-
T ss_pred EEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999998876553
No 27
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-80 Score=683.44 Aligned_cols=321 Identities=32% Similarity=0.485 Sum_probs=265.0
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEee--CC----cEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhhhhHHHH
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECI--ND----TTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYEDGAKEIA 95 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~--~~----~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~~v~plV 95 (758)
.++|+|+|||||+.+.+... +...+.+. ++ .++.+... ......+.|.||+||+++++|++||+. +.|+|
T Consensus 58 kgnIrV~vRvRP~~~~~e~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv 133 (403)
T 4etp_A 58 RGNIRVYLRIRPALKNLENS-DTSLINVNEFDDNSGVQSMEVTKI--QNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLV 133 (403)
T ss_dssp HCSEEEEEEECCCCTTTSCS-CCTTEEECCCBTTTTBEEEEEEEC--SSSCEEEEEEESEEECTTCCHHHHHHH-HHHHH
T ss_pred CCCeEEEEEeCCCCCccccc-CCCeeEEeeccCCCCceEEEEecC--CCCcCceEEEcCEEECCCCchHHHHHH-HHHHH
Confidence 47899999999998773222 22222221 11 12333221 122234789999999999999999998 55899
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccC----CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCCCC----
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLSTDN---- 165 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~----Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~~~---- 165 (758)
+++|+|||+||||||||||||||||+ ||+|+++.+||..+.... ...|.|++||+|||||+|+|||.+..
T Consensus 134 ~~~l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 213 (403)
T 4etp_A 134 QSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKE 213 (403)
T ss_dssp HHHHTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC------
T ss_pred HHHhCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCcccccc
Confidence 99999999999999999999999995 799999999999998643 46899999999999999999998754
Q ss_pred -----CCCccccCC-CCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCC
Q 004378 166 -----TPLRLLDDP-EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (758)
Q Consensus 166 -----~~l~i~ed~-~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~ 239 (758)
..+.+++++ .++++|.|++++.|.++++++.+|..|.++|++++|.+|..|||||+||+|+|.+... ..
T Consensus 214 ~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-----~~ 288 (403)
T 4etp_A 214 DTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNA-----KT 288 (403)
T ss_dssp --CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEET-----TT
T ss_pred ccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeec-----CC
Confidence 245566655 5679999999999999999999999999999999999999999999999999987642 22
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCC--CcccCCCCcccccccccCCCCcce
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRN--GHINYRDSKLTRMLQPCLGGNART 317 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~--~hIPYRdSKLTrLLqdsLGGNskT 317 (758)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+++.. .|||||||||||||||+|||||+|
T Consensus 289 ~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt 368 (403)
T 4etp_A 289 GAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKT 368 (403)
T ss_dssp CCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEE
T ss_pred CCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceE
Confidence 345679999999999999999999999999999999999999999999987543 599999999999999999999999
Q ss_pred eEEeecCCCcccHHHHHHHHHHHHHhhcccccce
Q 004378 318 AIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQ 351 (758)
Q Consensus 318 ~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~ 351 (758)
+|||||||+..+++||++||+||+|++.|+..++
T Consensus 369 ~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 369 LMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp EEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred EEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999999998764
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=2.1e-75 Score=687.02 Aligned_cols=320 Identities=30% Similarity=0.459 Sum_probs=250.4
Q ss_pred CCCCeEEEEEcC-----CCCchhhhcCCCCceEee------CCcEEEeecCCCCCCCCCcccccCeecCCCCChhHHHhh
Q 004378 21 REEKILVLVRLR-----PLSEKEITADEATDWECI------NDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTTQVYED 89 (758)
Q Consensus 21 ~~e~IrV~VRVR-----Pl~~~E~~~~~~~~~~~~------~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~eVy~~ 89 (758)
-.++++|||||| |+...+....+...+... ....|++..+. .+....+.|+||+||+++++|++||+.
T Consensus 372 il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~fd~vf~~~~~q~~v~~~ 450 (715)
T 4h1g_A 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNI-NNNFSNLRFLFDKIFEREQSNDLVFEE 450 (715)
T ss_dssp SSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEE-TTEEEEEEEECSEEECSSCCHHHHGGG
T ss_pred HHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCC-CCCCCCeEEEeceEeCCCCCHHHHHHH
Confidence 357799999999 444443332222233322 23345544432 223345799999999999999999987
Q ss_pred hhHHHHHHhhcCCCeeEEeeccCCCCcccccC----CCCcchHHHHHHHHHhcc--ccceEEEeehhhhhhhhhhcccCC
Q 004378 90 GAKEIALSVVSGINSSIFAYGQTSSGKTYTMT----GITECTVADIFDYIHRHE--ERAFVLKFSAMEIYNEAIRDLLST 163 (758)
Q Consensus 90 ~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~----Gii~rav~dLF~~i~~~~--~~~~~V~vS~lEIYnE~V~DLL~~ 163 (758)
+ .|+|+++|+|||+||||||||||||||||. ||+||++++||+.|.... ...|.|++||+|||||+|+|||++
T Consensus 451 ~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~ 529 (715)
T 4h1g_A 451 L-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP 529 (715)
T ss_dssp T-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred H-HHHHHHHhCCceEEEEccCCCCCchhhccCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence 5 589999999999999999999999999996 699999999999998644 457999999999999999999986
Q ss_pred CC---CCCccccCC-CCcEEEcccEEEEecCHHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCC
Q 004378 164 DN---TPLRLLDDP-EKGVVVEKVTEEILKDWNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKEN 239 (758)
Q Consensus 164 ~~---~~l~i~ed~-~~gv~V~gLte~~V~S~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~ 239 (758)
.. ..+.++++. .++++|.||+++.|.++++++.+|..|.++|++++|.+|.+|||||+||+|+|++... ..
T Consensus 530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~-----~~ 604 (715)
T 4h1g_A 530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNS-----LT 604 (715)
T ss_dssp CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEET-----TT
T ss_pred CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEec-----CC
Confidence 53 356666544 4559999999999999999999999999999999999999999999999999987632 23
Q ss_pred ceeEEEEEEEEEcCCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeE
Q 004378 240 STTLSASVNFVDLAGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAI 319 (758)
Q Consensus 240 ~~~~~skL~fVDLAGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~m 319 (758)
.....|+|+|||||||||+.++++.|.|++|+.+||+||++||+||.+|+.++..|||||||||||||||+|||||+|+|
T Consensus 605 ~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~ 684 (715)
T 4h1g_A 605 KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLM 684 (715)
T ss_dssp CCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEE
T ss_pred CCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEE
Confidence 34678999999999999999999999999999999999999999999998777789999999999999999999999999
Q ss_pred EeecCCCcccHHHHHHHHHHHHHhhccc
Q 004378 320 ICTLSPARSHVEQTRNTLLFACCAKEVT 347 (758)
Q Consensus 320 IatISPs~~~~eETlsTLrFA~rAk~Ik 347 (758)
||||||+..+++||++||+||+|||+|+
T Consensus 685 i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 685 FVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred EEEECCChhhHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999996
No 29
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.96 E-value=4e-31 Score=238.89 Aligned_cols=99 Identities=38% Similarity=0.571 Sum_probs=95.2
Q ss_pred hhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHHHHHHHHHHHHhhcccccc
Q 004378 271 GCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKA 350 (758)
Q Consensus 271 g~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~ 350 (758)
+.+||+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+||+.|+++|
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~ 80 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTV 80 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCcchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcc
Confidence 46899999999999999998877899999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCHHHHHHHHHHHH
Q 004378 351 QVNVVMSDKALVKHLQKEL 369 (758)
Q Consensus 351 ~vN~~~s~~~li~~Lq~Ei 369 (758)
.+|+..+...++++|++|+
T Consensus 81 ~~n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 81 SVNLELTAEEWKKKYEKEK 99 (100)
T ss_dssp CCEEECCHHHHHHHHHHHH
T ss_pred eeccCCCHHHHHHHHHHhh
Confidence 9999999999999998886
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.95 E-value=4.3e-29 Score=232.00 Aligned_cols=98 Identities=39% Similarity=0.588 Sum_probs=92.3
Q ss_pred chhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHHHHHHHHHHHHhhcccccceecc
Q 004378 275 NRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNV 354 (758)
Q Consensus 275 NkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eETlsTLrFA~rAk~Ikn~~~vN~ 354 (758)
|+||++||+||.+|+.++..||||||||||+||||+||||++|+|||||||+..+++||++||+||+|||.|+|+|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 004378 355 VMSDKALVKHLQKELARL 372 (758)
Q Consensus 355 ~~s~~~li~~Lq~Ei~~L 372 (758)
..+.+.+++++++++.++
T Consensus 81 ~~~~~~l~~~~~~e~~~~ 98 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKN 98 (117)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999888887777766544
No 31
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.1e-24 Score=221.36 Aligned_cols=264 Identities=13% Similarity=0.122 Sum_probs=170.3
Q ss_pred CCCeEEEEEcCCCC-chhhhcCCCCceEeeCCcEEEeecCCCCCCCCCcccccCeecCCCCChh--HHHhhhhHHHHHHh
Q 004378 22 EEKILVLVRLRPLS-EKEITADEATDWECINDTTILYRNTLREGSTFPSAYTFDRVFWGDCSTT--QVYEDGAKEIALSV 98 (758)
Q Consensus 22 ~e~IrV~VRVRPl~-~~E~~~~~~~~~~~~~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~asQ~--eVy~~~v~plV~~v 98 (758)
.++|||||||||.. + ..+.+...+ ..|.+ +. ..+.|.||+||++.+.|+ +||++ +.++|+.+
T Consensus 23 KGnIRVFcrvrp~~~p------~~~~v~y~~-~~I~v-~~------~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~i~sc 87 (298)
T 2o0a_A 23 KGTMRCYAYVMEQNLP------ENLLFDYEN-GVITQ-GL------SEHVYKFNRVIPHLKVSEDKFFTQE-YSVYHDMC 87 (298)
T ss_dssp HTCCEEEEEECGGGSC------TTEEEETTT-TEEEE-TT------TCCEEECSEEEETTTSCHHHHHHHT-THHHHHHH
T ss_pred hCceEEEEEeccccCC------ccceeecCc-cceee-cC------CCceEEeeeEECccccccHHHHHHH-HHHHHHHH
Confidence 37899999999953 2 111122222 33443 22 126899999999999999 99999 99999999
Q ss_pred hc-CCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHh-ccccceEEEeehhhhh-hhhhhcccCCC--CCCCccccC
Q 004378 99 VS-GINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHR-HEERAFVLKFSAMEIY-NEAIRDLLSTD--NTPLRLLDD 173 (758)
Q Consensus 99 l~-G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~-~~~~~~~V~vS~lEIY-nE~V~DLL~~~--~~~l~i~ed 173 (758)
|+ |||+||||||||||||| |+++..+|..... .. ..|.+.++|+||| ||.++|||... ...+.|+-+
T Consensus 88 Ld~GyNvcIfSyGQTGsGKT-------~ral~q~f~~~~~~~~-~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~ 159 (298)
T 2o0a_A 88 LNQKKNFNLISLSTTPHGSL-------RESLIKFLAEKDTIYQ-KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLK 159 (298)
T ss_dssp HHTTCCEEEEEECSSCCHHH-------HHHHHHHHHSTTSHHH-HHEEEEEEEEEEECC-CEEETTSCCC------CEEE
T ss_pred HhCCCceEEEEECCCCCCcc-------HHHHHHHHHHhhhhcc-cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEec
Confidence 99 99999999999999999 9999999987644 33 7899999999999 99999999632 235677777
Q ss_pred CCCcEEEcccEEEEecC-HHHHHHHHHHhhhhcccccccccCCCCCceeEEEEEEEeecccccCCCCceeEEEEEEEEEc
Q 004378 174 PEKGVVVEKVTEEILKD-WNHLKELLSICEAQRRIGETLLNEKSSRSHQIIRLMIESSAREFLGKENSTTLSASVNFVDL 252 (758)
Q Consensus 174 ~~~gv~V~gLte~~V~S-~ee~~~lL~~g~~~R~~~~T~~N~~SSRSH~IftL~Ve~~~~~~~~~~~~~~~~skL~fVDL 252 (758)
..++++|.|++.+.|.+ .+|+..++..+..- .+|. +.-.|+.+.+....... .++.....--++|+.+
T Consensus 160 ~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~------~~~~---~gi~i~k~~~~~~~~~~--~~~~~~~~~d~yf~e~ 228 (298)
T 2o0a_A 160 FEKHSISLDSKLVIIENGLEDLPLNFSCDEHP------NLPH---SGMGIIKVQFFPRDSKS--DGNNDPVPVDFYFIEL 228 (298)
T ss_dssp ECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEEEEEEESCC---------CCCEEEEEEEE
T ss_pred CCCCEEecccEEEEccccHHHHHHHhhccccc------ccCC---CCceEEEEEEecCcccc--cccCCCCceEEEEEEe
Confidence 88999999999999999 89888887333221 2222 23556666665421111 1111112334778876
Q ss_pred CCCcccccccchhhhhhhhhhcchhHHHHHHHHHHhccCCCCcccCCCCcccccccccCCCCcceeEEeecCCCcccHHH
Q 004378 253 AGSERASQALSTGARLKEGCHINRSLLTLSTVIRKLSKGRNGHINYRDSKLTRMLQPCLGGNARTAIICTLSPARSHVEQ 332 (758)
Q Consensus 253 AGSEr~~~t~s~g~rlkEg~~INkSL~aLg~VI~aLs~~~~~hIPYRdSKLTrLLqdsLGGNskT~mIatISPs~~~~eE 332 (758)
.-.. +...|.+ ++..+ -+-.|+++-+|+--|- ..+-++++++.-....
T Consensus 229 ~~~~--------------------~~~~l~~---~~~~~-----~~~~spi~~il~~ll~-~tks~~~~~l~~~~~~--- 276 (298)
T 2o0a_A 229 NNLK--------------------SIEQFDK---SIFKK-----ESCETPIALVLKKLIS-DTKSFFLLNLNDSKNV--- 276 (298)
T ss_dssp CSHH--------------------HHHHHHH---HHHTC------CCCSHHHHHHHHHHH-HSBCEEEEEECCGGGH---
T ss_pred CCHH--------------------HHHHHHh---hcccc-----cccCCcHHHHHHHHHh-cCcceEEEEecCCCch---
Confidence 5321 1222323 22222 2234566666665443 3577899998754332
Q ss_pred HHHHHHHHHHhhccccccee
Q 004378 333 TRNTLLFACCAKEVTTKAQV 352 (758)
Q Consensus 333 TlsTLrFA~rAk~Ikn~~~v 352 (758)
-.-|..+.+..+++|....
T Consensus 277 -~~lL~~s~~i~~~~~~~~~ 295 (298)
T 2o0a_A 277 -NKLLTISEEVQTQLCKRKK 295 (298)
T ss_dssp -HHHHHHHHHHHHHTC----
T ss_pred -hHHHHHHHHhhcccCcccc
Confidence 2367788888777765443
No 32
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.89 E-value=0.017 Score=55.14 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=37.3
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.++||.....+..|+.+++. +..++.++--.....++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLT-IRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHH-HHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHH-HHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 46888876655567788765 6667766544444567889999999999864
No 33
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.45 E-value=0.055 Score=52.43 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=34.7
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC-eeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N-~tIfAYGqTGSGKTyTM~ 121 (758)
.++||.+...+..+..+++. +..++...-.+.. ..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 46788766655466667764 4555555433322 678899999999999863
No 34
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.95 E-value=0.086 Score=55.69 Aligned_cols=51 Identities=14% Similarity=0.313 Sum_probs=34.6
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
++||.+......+..++. .+..++...-.+....|+-||++|+||||.+.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHHHH
Confidence 577765544435555665 355566655444456788999999999999754
No 35
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=85.61 E-value=0.37 Score=50.19 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=30.9
Q ss_pred cCeecCCCCChhHHHhhhhHHHHHHhhcCCC----eeEEeeccCCCCccccc
Q 004378 73 FDRVFWGDCSTTQVYEDGAKEIALSVVSGIN----SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 73 FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N----~tIfAYGqTGSGKTyTM 120 (758)
||..|+..---..+.+.++..++...+...+ ..|+-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444443333355666677777776654222 36888999999999964
No 36
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=84.91 E-value=0.47 Score=43.96 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.1
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
...++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 3445555555667788999999999999863
No 37
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=84.35 E-value=0.48 Score=47.79 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.3
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHH-----HHhhcCCCeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIA-----LSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV-----~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.+.|+.+.+.+...+.+.+. +..+. ..+-......|+-||++|+|||+.+.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 57899999887666655543 22211 11111233458899999999999863
No 38
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.15 E-value=0.89 Score=50.54 Aligned_cols=50 Identities=22% Similarity=0.303 Sum_probs=32.5
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHH-Hhhc--CC--CeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G~--N~tIfAYGqTGSGKTyTM 120 (758)
-+||-|-+-+.--+++.+.+..|+.. ..+. |. .-.|+-||+.|+|||+..
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH
Confidence 57777777654445555555555543 2333 33 235999999999999876
No 39
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=83.08 E-value=0.41 Score=48.40 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=21.7
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|+||.+.+.+..-..+.+ .+..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~-----~~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLE-----QVSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHH-----HHHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHH-----HHHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 4789988765433223322 222322 23467888999999999875
No 40
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.79 E-value=0.77 Score=47.87 Aligned_cols=51 Identities=27% Similarity=0.486 Sum_probs=31.4
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
..|+||.++... .+...+.. +..++..-- +....++-||++|+|||+.+..
T Consensus 6 ~~~~f~~fv~g~-~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 6 PKYTLENFIVGE-GNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp TTCCSSSCCCCT-TTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHH
T ss_pred CCCCcccCCCCC-cHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHH
Confidence 468998876432 34444443 444443311 1335688999999999998643
No 41
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.51 E-value=0.55 Score=52.36 Aligned_cols=51 Identities=22% Similarity=0.209 Sum_probs=35.8
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc--CC--CeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G~--N~tIfAYGqTGSGKTyTM 120 (758)
.-+||.|-+-+.--+++.+.+..|+.. ..+. |. --.|+-||+.|+|||++.
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH
Confidence 357888887765556677777777653 3333 32 346899999999999875
No 42
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=82.28 E-value=0.53 Score=43.67 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=23.0
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
...++..+..+....|+-||++|+|||+.+.
T Consensus 31 ~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 31 IRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 3445555555667788999999999999763
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.26 E-value=0.85 Score=44.27 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=28.2
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.++||.++.. ..+..++.. +..++ .+....|+-||++|+|||+.+.
T Consensus 24 ~~~~~~~~~~-~~~~~~~~~-----l~~~~~~~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 24 DETFTSYYPA-AGNDELIGA-----LKSAASGDGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp TCSTTTSCC---CCHHHHHH-----HHHHHHTCSCSEEEEECSTTSSHHHHHH
T ss_pred CCChhhccCC-CCCHHHHHH-----HHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 3577766652 223444443 22233 3356778999999999999864
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=80.95 E-value=0.53 Score=49.05 Aligned_cols=44 Identities=14% Similarity=0.342 Sum_probs=28.9
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|+|+.+++.+ .+... +...++.+....|+-||++|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 357899887643 33322 233344444455999999999999875
No 45
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.85 E-value=0.6 Score=47.43 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=31.5
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-----HhhcCCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-----SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-----~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.||.+.+.+..-+.+.+.+..++.. ..--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 578998887654444444443333211 111134456899999999999875
No 46
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.42 E-value=0.88 Score=46.16 Aligned_cols=21 Identities=29% Similarity=0.194 Sum_probs=18.2
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999975
No 47
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=80.06 E-value=0.65 Score=48.32 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=31.5
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhh----cCCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVV----SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl----~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++||.|.+.+..-+.+.+.+..|+.. ..+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 467888877654444555544443211 111 123456899999999999875
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=79.83 E-value=0.58 Score=49.99 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=33.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhcccc----c-eEEEeehhhhh
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRHEER----A-FVLKFSAMEIY 153 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~~~~----~-~~V~vS~lEIY 153 (758)
|-..+-.|...+|+-||++|+|||.++ ..+...+...... . ..|.+.++.+.
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v--------~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV--------NDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH--------HHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH--------HHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 333444688889999999999999884 4455555432211 2 24666666543
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.18 E-value=0.86 Score=45.66 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=28.7
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHH-HHhhcCC----CeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIA-LSVVSGI----NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV-~~vl~G~----N~tIfAYGqTGSGKTyTM~ 121 (758)
.++||.|.+.+....++-+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 12 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHH
Confidence 5789988776433233222 222110 0122222 2238999999999999863
No 50
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=77.32 E-value=1.3 Score=48.87 Aligned_cols=52 Identities=29% Similarity=0.495 Sum_probs=30.9
Q ss_pred CCcccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 67 FPSAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 67 ~~~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
....|+||...... .+...+.. +..++.. .|....+|-||++|+|||+.+..
T Consensus 98 l~~~~tfd~fv~g~-~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 98 LNPDYTFENFVVGP-GNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQS 149 (440)
T ss_dssp CCTTCSGGGCCCCT-TTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHHH
T ss_pred CCCCCChhhcCCCC-chHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHHH
Confidence 44578998765332 23333332 3333332 12134688999999999998743
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.96 E-value=0.83 Score=46.76 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=31.5
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc---CCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS---GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~---G~N~tIfAYGqTGSGKTyTM 120 (758)
...||.+.+.+..-+.+.+.+..|+.. .++. .....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 457888877554444444444443321 1222 23567999999999999875
No 52
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.77 E-value=1.2 Score=49.13 Aligned_cols=50 Identities=22% Similarity=0.231 Sum_probs=34.1
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHH-Hhhc--CC--CeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G~--N~tIfAYGqTGSGKTyTM 120 (758)
-+||.|-+-+.--+++-+.+.-|+.. .++. |. .-.|+-||+.|+|||...
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 46777777665555666666666643 3333 33 346999999999999876
No 53
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.54 E-value=1.2 Score=43.25 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3455678876 67788999999987
No 54
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.43 E-value=1.2 Score=41.77 Aligned_cols=19 Identities=21% Similarity=0.553 Sum_probs=15.5
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..++-||++|+|||+.+..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp SEEEEESSSTTTTCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3567799999999998743
No 55
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=75.25 E-value=0.78 Score=49.05 Aligned_cols=50 Identities=14% Similarity=0.165 Sum_probs=29.8
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHh----hcCCCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSV----VSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~v----l~G~N~tIfAYGqTGSGKTyTM 120 (758)
..||.+.+.+..-+.+.+.+..|+...- +.+....|+-||++|+|||+.+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 5677776654333334433333322111 2345667999999999999875
No 56
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.19 E-value=1.4 Score=42.26 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.| ++..++||||||.+.
T Consensus 33 ~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 33 SIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHccCCC--EEEECCCCCchHHHH
Confidence 3445667866 567789999999764
No 57
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=74.65 E-value=1.5 Score=41.55 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=16.5
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343345999999999999875
No 58
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=74.52 E-value=1.4 Score=42.12 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++|.+ ++..++||||||.+.
T Consensus 32 i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 32 LPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCCC--EEEECCCCChHHHHH
Confidence 445677866 567789999999873
No 59
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.09 E-value=12 Score=40.10 Aligned_cols=119 Identities=10% Similarity=0.102 Sum_probs=79.3
Q ss_pred CCCeEEEEEcCCCCchhhhcCCCCceEee-CCcEEEeecCCCCCCCCCcccccCeecCCCC-ChhHHHhhhhHHHHHHhh
Q 004378 22 EEKILVLVRLRPLSEKEITADEATDWECI-NDTTILYRNTLREGSTFPSAYTFDRVFWGDC-STTQVYEDGAKEIALSVV 99 (758)
Q Consensus 22 ~e~IrV~VRVRPl~~~E~~~~~~~~~~~~-~~~ti~~~~~~~~~s~~~~~F~FD~VF~~~a-sQ~eVy~~~v~plV~~vl 99 (758)
.+.||+|+=+-+-. -+..|.+. .+.+|.-.. ....|.|++|+.... +-.+++..-.+..++-++
T Consensus 58 KG~IRcFAYi~~~~-------~p~~~~idY~~~~It~~~-------~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL 123 (333)
T 4etp_B 58 KGTMRVYAYVMEQN-------LPENLLFDYENGVITQGL-------SEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMAL 123 (333)
T ss_dssp HTCCEEEEEECCSS-------CCSSCEEETTTTEEEC---------CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHH
T ss_pred cCcEEEEEEECccc-------CCccEEEecccceEeecC-------CcceEEEeeeechhhcchHHHHHHHHHHHHHHHH
Confidence 57799998887621 12223333 244564111 236899999998765 344555555999999999
Q ss_pred -cCCCeeEEeeccCCCCcccccCCCCcchHHHHHHHHHhc---cccceEEEeehhhhhhhh-hhcccCCC
Q 004378 100 -SGINSSIFAYGQTSSGKTYTMTGITECTVADIFDYIHRH---EERAFVLKFSAMEIYNEA-IRDLLSTD 164 (758)
Q Consensus 100 -~G~N~tIfAYGqTGSGKTyTM~Gii~rav~dLF~~i~~~---~~~~~~V~vS~lEIYnE~-V~DLL~~~ 164 (758)
.+.|+.||..|+.- .+.....++..+... -...|.+.+-|+.+-++. ..|||.+.
T Consensus 124 ~~~~NfslIsis~~~----------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~ 183 (333)
T 4etp_B 124 NQKKNFNLISLSTTP----------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDY 183 (333)
T ss_dssp HTTCCEEEEEEESSC----------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC-
T ss_pred ccCCCeeEEEecCCC----------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccc
Confidence 89999999999751 223445566666655 235788999998888776 69999765
No 60
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.78 E-value=0.7 Score=46.04 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.5
Q ss_pred CCeeEEeeccCCCCcccccC
Q 004378 102 INSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~ 121 (758)
....|+-||++|+|||+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34568999999999999753
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=73.72 E-value=1.1 Score=47.03 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.5
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+....++-||++|+|||+.+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHH
Confidence 345568999999999999885
No 62
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.55 E-value=0.86 Score=51.26 Aligned_cols=50 Identities=20% Similarity=0.179 Sum_probs=32.6
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHH-Hhhc--C--CCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTM 120 (758)
-+||-|-+-+.--+++.+.+..|+.. .++. | .--.|+-||+.|+|||+..
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 57777776654445555555555543 2333 3 2346999999999999865
No 63
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=73.37 E-value=0.64 Score=47.52 Aligned_cols=51 Identities=18% Similarity=0.150 Sum_probs=28.4
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHH-HHhhcCC----CeeEEeeccCCCCcccccC
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIA-LSVVSGI----NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV-~~vl~G~----N~tIfAYGqTGSGKTyTM~ 121 (758)
.++||.|.+.+....++-+ +...+- ..++.++ ...|+-||++|+|||+.+.
T Consensus 36 ~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHH
Confidence 5788888776533232222 122110 1122222 2238999999999999863
No 64
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.68 E-value=0.93 Score=50.55 Aligned_cols=51 Identities=22% Similarity=0.245 Sum_probs=33.8
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc--CC--CeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--GI--NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G~--N~tIfAYGqTGSGKTyTM 120 (758)
..+||.|-+-+.--+++.+.+..|+.. .++. |. .-.|+-||+.|+|||++.
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 457888877654445566655555543 3333 32 346999999999999876
No 65
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=71.94 E-value=2.4 Score=45.34 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=31.0
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-HhhcCC---CeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI---NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~---N~tIfAYGqTGSGKTyTM 120 (758)
..+|+.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 457888877654444444444444221 223322 235888999999999876
No 66
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=71.53 E-value=1.8 Score=42.90 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.+..+++|.+ ++..++||||||.+
T Consensus 59 ~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 59 AIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHH
Confidence 4456678877 67788999999987
No 67
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=71.43 E-value=1.2 Score=46.91 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=31.0
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHH-HhhcCC---CeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI---NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~---N~tIfAYGqTGSGKTyTM 120 (758)
.+||.|.+.+.--+.+.+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 47888877654444444444444332 333442 246899999999999875
No 68
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=71.05 E-value=0.98 Score=45.34 Aligned_cols=50 Identities=24% Similarity=0.202 Sum_probs=28.7
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc----CCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS----GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~----G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.||.+.+.+..-+.+.+. +..+.. ..+. .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 46888888765433333322 222111 1111 23446899999999999875
No 69
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.90 E-value=2 Score=44.55 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=26.7
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.|+.+.+.+. ....+...+..|....++-||++|+|||+++.
T Consensus 35 ~~~~i~g~~~--------~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 35 NLDEVTAQDH--------AVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp STTTCCSCCT--------THHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhhCCHH--------HHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 5666665432 22334444455543448899999999999863
No 70
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.45 E-value=2.1 Score=47.80 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=31.9
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHH-Hhhc--C--CCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS--G--INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~--G--~N~tIfAYGqTGSGKTyTM 120 (758)
-+||.|-+-+.--+++.+.+..|+.. .++. | .--.|+-||+.|+|||...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH
Confidence 46777766554445555555555532 2333 3 2357999999999999876
No 71
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=70.43 E-value=1.2 Score=44.31 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.| ++..++||||||.+.
T Consensus 60 ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 60 AIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 4455678877 677899999999773
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=70.27 E-value=3.3 Score=43.41 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=28.0
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC-e--eEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN-S--SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N-~--tIfAYGqTGSGKTyTM 120 (758)
.|.++.+++ ++...+. +...+..++.|.. . .++-||++|+|||+++
T Consensus 13 ~~~p~~l~g----r~~~~~~-l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 13 SYVPKRLPH----REQQLQQ-LDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCCCSCCTT----CHHHHHH-HHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ccCCCCCCC----hHHHHHH-HHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 345555444 3444443 3334455555533 4 6899999999999985
No 73
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=69.36 E-value=2.1 Score=42.07 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.+ ++..++||||||.+.
T Consensus 55 ~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 55 TIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 3455678877 566789999999863
No 74
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.08 E-value=2.4 Score=44.55 Aligned_cols=42 Identities=29% Similarity=0.421 Sum_probs=25.8
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.|+.+++ |+.+.+ .+-..+-.|.-..++-||+.|+|||+++.
T Consensus 23 ~~~~~~g----~~~~~~----~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 23 TLDEVYG----QNEVIT----TVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SGGGCCS----CHHHHH----HHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred cHHHhcC----cHHHHH----HHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 4556664 344443 23333345543337889999999999874
No 75
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.03 E-value=2.2 Score=47.18 Aligned_cols=29 Identities=24% Similarity=0.288 Sum_probs=22.7
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
+++..++..-...|+-.|+||||||+||.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 45556666566788999999999999973
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=68.99 E-value=2.1 Score=41.55 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.+ ++..++||||||.+.
T Consensus 44 ~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 44 CIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCchhhhh
Confidence 3455677877 566779999999764
No 77
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=68.94 E-value=2.6 Score=44.24 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=31.0
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCe--eEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINS--SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~--tIfAYGqTGSGKTyTM 120 (758)
.+.||.+.+. +.+... ...++..+..|... .++-||++|+|||+..
T Consensus 40 ~~~~~~ivG~----~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVGQ----LAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEESC----HHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccCh----HHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 4567777764 333332 33455555566654 8999999999999885
No 78
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.63 E-value=37 Score=29.30 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
.|.-|+-||..||.+-. .......+.......+..++.+|+.++...+.|+..|+-.+.
T Consensus 21 tI~lLqmEieELKekN~---------~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e 79 (81)
T 2jee_A 21 TITLLQMEIEELKEKNN---------SLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35566777777776532 112222222333445888999999999999999999887653
No 79
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.36 E-value=7.1 Score=33.02 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 394 KKDLQIQKMEREIRELTKQRDLAQSRVE 421 (758)
Q Consensus 394 ~~~~~i~~le~ei~el~~q~~~~q~~~~ 421 (758)
+++..|+.+++++.+...+...+++++.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 80
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=67.23 E-value=1.2 Score=42.57 Aligned_cols=23 Identities=35% Similarity=0.338 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEeeccCCCCccccc
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+++|.+ ++..++||+|||++.
T Consensus 43 ~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 43 QPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHhcCCC--EEEEcCCCCCHHHHH
Confidence 34456765 566899999999986
No 81
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=66.84 E-value=2.5 Score=41.30 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.|+ +..++||||||.+.
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788775 66789999999873
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.77 E-value=2.4 Score=42.24 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=18.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.| ++..++||||||.+.
T Consensus 53 ~i~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 53 AIPAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3445677877 566679999999764
No 83
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=66.73 E-value=1.9 Score=43.79 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=19.2
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.++..++.|.| +++.++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34555677876 67789999999976
No 84
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=66.70 E-value=1.7 Score=45.52 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=30.8
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-HhhcCC---CeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI---NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~---N~tIfAYGqTGSGKTyTM 120 (758)
..+||.|.+.+.--+.+.+.+..|+.. .++.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 357888877554444444444444322 222222 246999999999999875
No 85
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=66.44 E-value=2.4 Score=45.73 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++.+++.--...|.-.|+||||||++|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 444555555568888999999999997
No 86
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=66.02 E-value=4.3 Score=44.83 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=31.6
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCC--eeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGIN--SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N--~tIfAYGqTGSGKTyTM 120 (758)
.|.||.+.+ |+++.+. +..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~-l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREA-CGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHH-HHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 466777765 4555544 3445666666654 36888999999999886
No 87
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=65.95 E-value=0.92 Score=46.88 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=26.8
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-HhhcCCC----eeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGIN----SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~N----~tIfAYGqTGSGKTyTM 120 (758)
..+||.|-+.+.-.+.+.+.+..|+-. .++++++ ..|+-||+.|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356777765544444455444444432 2333332 22899999999999875
No 88
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=65.94 E-value=1.9 Score=46.43 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=29.6
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-Hhhc---CCCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVS---GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~---G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.||.+.+.+.--+.+.+.+..++.. .++. .-...|+-||++|+|||+..
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 457888877543333333333333321 1111 22457999999999999875
No 89
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=65.57 E-value=2.4 Score=43.31 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.4
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
.....|+-||++|+|||+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34446999999999999975
No 90
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=65.10 E-value=2.7 Score=43.69 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=20.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|-.--+++.++||||||.+.
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 456677874455788999999999873
No 91
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=64.79 E-value=2.8 Score=44.26 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 44566778888 677899999999874
No 92
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=63.91 E-value=2.8 Score=41.58 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.|+ +..++||||||.+.
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 34456688764 55679999999873
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=63.86 E-value=2.7 Score=41.75 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..++..+..|. .++..|+||||||..+
T Consensus 67 ~~~i~~i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 67 SEILEAISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHHCS--EEEEECCTTSSHHHHH
T ss_pred HHHHHHHhcCC--EEEEEeCCCCCcHHhH
Confidence 34555666775 4577899999999765
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=63.86 E-value=20 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.156 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 389 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 389 ~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
...+++++.+|+..+..|++|.++++.....++.|...+
T Consensus 25 q~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 25 QYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555554443
No 95
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=63.67 E-value=3.2 Score=40.86 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=17.9
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++|.| ++..++||||||.+.
T Consensus 55 i~~~~~~~~--~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 55 IPLGRCGLD--LIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445677877 456779999999873
No 96
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=62.74 E-value=3.4 Score=41.52 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.+ ++..++||||||.+.
T Consensus 73 ~i~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCCC--EEEEcCCCCCchhHh
Confidence 3455677866 556679999999764
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.64 E-value=3.7 Score=43.14 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=29.1
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHHHhhcC-CCeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIALSVVSG-INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G-~N~tIfAYGqTGSGKTyTM 120 (758)
..|.++.+++- ++..+.+ ...+..++.| ....|+-||++|+|||+.+
T Consensus 15 ~~~~p~~l~gr----~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 15 PLSVFKEIPFR----EDILRDA-AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp HHHHCSSCTTC----HHHHHHH-HHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CccCCCCCCCh----HHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 45666665543 4444442 2334444443 4558999999999999875
No 98
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=62.61 E-value=29 Score=32.01 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
..+|.+|+.+|.+|+.+|... ..+....+.+...+|-.|+.++.+-+.+++.+...++.|...+..
T Consensus 14 D~~Ie~Lkreie~lk~ele~l-----~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM-----KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999998532 112223344444455556666665555555555555555555443
No 99
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.29 E-value=2.9 Score=43.49 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=16.7
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
+....++-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44568899999999999875
No 100
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=61.21 E-value=3.3 Score=46.62 Aligned_cols=50 Identities=18% Similarity=0.146 Sum_probs=30.2
Q ss_pred cccCeecCCCCChhHHHhhhhHHHH-----HHhhcCCCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIA-----LSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV-----~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..|+.+.+.+..-+.+.+.+..++. ..+-......|+-||++|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 4667766655444455554443321 1111244567999999999999875
No 101
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=61.18 E-value=4.4 Score=37.17 Aligned_cols=23 Identities=17% Similarity=0.119 Sum_probs=17.7
Q ss_pred CCeeEEeeccCCCCcccccCCCC
Q 004378 102 INSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~Gii 124 (758)
.+..|+-||++|+|||+....+.
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGC
T ss_pred CCCcEEEECCCCccHHHHHHHHH
Confidence 34557889999999999875543
No 102
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.42 E-value=2.3 Score=47.00 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=28.6
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-HhhcC---CCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSG---INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G---~N~tIfAYGqTGSGKTyTM 120 (758)
...||.|.+.+.--+.+.+.+..|+.. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 457787776443222333322222221 22222 2356889999999999875
No 103
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.27 E-value=2.4 Score=41.24 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=17.7
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++|.++ +..++||||||.+.
T Consensus 35 i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 35 IPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3455678664 56789999999863
No 104
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.91 E-value=4.4 Score=38.53 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.9
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..++-||+.|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999875
No 105
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=59.79 E-value=3.7 Score=42.19 Aligned_cols=20 Identities=35% Similarity=0.386 Sum_probs=16.5
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
.-...+.-.|+||||||+++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 34457788999999999987
No 106
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=59.78 E-value=50 Score=31.02 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
+...+.+++.+++++.+|+++...++.++..|...++
T Consensus 98 l~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 98 LIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666655443
No 107
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=59.74 E-value=3.7 Score=43.49 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=19.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..+++|.+ ++..++||||||.+.
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHHH
Confidence 4456678877 567789999999764
No 108
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=59.28 E-value=3.9 Score=44.78 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
..+..++.|.+..++..|+||||||..
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 345566777667789999999999977
No 109
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=59.12 E-value=4.2 Score=41.24 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|+-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457889999999999975
No 110
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=59.04 E-value=4.6 Score=42.13 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=24.3
Q ss_pred hHHHHHHhhcCC---CeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSGI---NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G~---N~tIfAYGqTGSGKTyTM~ 121 (758)
+...+..+++|. --+|+-||+.|+|||+...
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 444577888887 3479999999999998753
No 111
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=58.96 E-value=4.2 Score=42.80 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=20.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+..++..++||||||.+.
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 455667775566788899999999874
No 112
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=58.66 E-value=4.1 Score=42.44 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=19.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|-...++..++||||||.+.
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 345567774455778899999999864
No 113
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=56.68 E-value=4.3 Score=42.76 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667876 567789999999764
No 114
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=56.35 E-value=4.7 Score=41.02 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=17.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++|.+ ++..++||+|||.+.
T Consensus 25 i~~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 25 IPLMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEEcCCCCcHHHHH
Confidence 344567766 566789999999865
No 115
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=56.31 E-value=5.2 Score=40.76 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.|+.+.+ |+++.+. +...+-.|....++-||+.|+|||++..
T Consensus 23 ~~~~~~g----~~~~~~~----l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 23 RLDDIVG----QEHIVKR----LKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp STTTCCS----CHHHHHH----HHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred CHHHhhC----CHHHHHH----HHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 4666554 4444443 2222334544458999999999999863
No 116
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=56.29 E-value=5.3 Score=44.30 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=29.8
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+||.+++ |+.+... ...+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 4666654 5555532 344555555566678999999999999875
No 117
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=56.24 E-value=5.8 Score=41.74 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.3
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999986
No 118
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=56.22 E-value=6.3 Score=40.87 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=27.8
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhh--cCCCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVV--SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl--~G~N~tIfAYGqTGSGKTyTM 120 (758)
+|+.+.+. +.+.+. +..++..+. .+....|+-||++|+|||+..
T Consensus 27 ~~~~iiG~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQ----ESIKKN-LNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSC----HHHHHH-HHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCCh----HHHHHH-HHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 56666553 444443 333444443 244557999999999999875
No 119
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=55.57 E-value=4.2 Score=37.28 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=16.5
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..|+-||++|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999874
No 120
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=55.47 E-value=4.7 Score=40.38 Aligned_cols=24 Identities=21% Similarity=-0.058 Sum_probs=17.7
Q ss_pred HHhhcCCCeeEEeeccCCCCcccccC
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..++++.+ ++.+|+||+|||+...
T Consensus 103 ~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 103 ERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 34566655 6677899999999853
No 121
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=55.42 E-value=59 Score=28.75 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~ 426 (758)
....++|++|+..|+.++...... |.-+.-.+.+.++.+|.++++.+.+++...+....-....
T Consensus 22 a~~~~~lk~E~~~lk~E~~stSaQ----DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~ 85 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSISAQ----DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 85 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999765433 2334445556677778888888877777766665544433
No 122
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=54.64 E-value=6.4 Score=43.70 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=27.9
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.||.|.+.+ .. +..++..+..+....++-||++|+|||+...+
T Consensus 178 ~ld~iiGr~----~~----i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 178 SLDPVIGRS----KE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp CSCCCCCCH----HH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCcH----HH----HHHHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 466666542 22 23344444445566778899999999998754
No 123
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=54.45 E-value=4.2 Score=41.51 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999875
No 124
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=54.42 E-value=8.2 Score=44.92 Aligned_cols=73 Identities=18% Similarity=0.173 Sum_probs=45.0
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCc-------------chHHHHHHHHHh
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE-------------CTVADIFDYIHR 137 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------rav~dLF~~i~~ 137 (758)
|.+.. |.|...|..-+.. ++..+-.|... ....|.||||||+||..++. .....|++.+..
T Consensus 2 ~~~~~-~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~~~A~ql~~el~~ 75 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRE 75 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCHHHHHHHHHHHHH
Confidence 44443 3777888877665 45555666533 34579999999999964322 124556666654
Q ss_pred c-cccceEEEeeh
Q 004378 138 H-EERAFVLKFSA 149 (758)
Q Consensus 138 ~-~~~~~~V~vS~ 149 (758)
. ++..+.+..||
T Consensus 76 ~~~~~~V~~fps~ 88 (664)
T 1c4o_A 76 LFPENAVEYFISY 88 (664)
T ss_dssp HCTTSEEEECCCG
T ss_pred HCCCCeEEEcCch
Confidence 4 33445555665
No 125
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=54.37 E-value=5.4 Score=45.15 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=16.8
Q ss_pred hhcCCCeeEEeeccCCCCccccc
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+-.|.+ |+-.|+||||||++|
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHH
Confidence 345766 667899999999997
No 126
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=54.18 E-value=5.3 Score=42.21 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..++.|.|+ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4456778774 56789999999764
No 127
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=54.01 E-value=48 Score=31.13 Aligned_cols=54 Identities=19% Similarity=0.221 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVED 422 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~ 422 (758)
..++.+.+|+..|+.+|.+ ....+++...++.++++++.+|+.+...++..+..
T Consensus 82 ~~l~~~~kE~~~lK~el~~---------~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 82 LDIENKDKEIYDLKHELIA---------AQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666666677766632 23445566677778888888888888877776654
No 128
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=53.89 E-value=7.9 Score=46.39 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=36.0
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-HhhcCCC----eeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGIN----SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~N----~tIfAYGqTGSGKTyTM 120 (758)
..+||.|-+-+.--+++.+.+..|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 457888877766666666665556543 4555554 36999999999999876
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=53.37 E-value=8.7 Score=39.78 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=22.3
Q ss_pred hhHHHHHHhhcCC-----CeeEEeeccCCCCccccc
Q 004378 90 GAKEIALSVVSGI-----NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 90 ~v~plV~~vl~G~-----N~tIfAYGqTGSGKTyTM 120 (758)
+...++..++.|+ ...|+..|++|||||+..
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4555666666553 346889999999999875
No 130
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.03 E-value=7.9 Score=39.66 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=27.0
Q ss_pred cccCeecCCCCChhHHHhhhhHHHHHHhh--cCCCeeEEeeccCCCCccccc
Q 004378 71 YTFDRVFWGDCSTTQVYEDGAKEIALSVV--SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 71 F~FD~VF~~~asQ~eVy~~~v~plV~~vl--~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+|+.+.+.+ .+... +..++..+. .+....|+-||++|+|||+..
T Consensus 9 ~~~~~~ig~~----~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 9 KTLDEYIGQE----RLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CSTTTCCSCH----HHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred ccHHHhhCHH----HHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 3677766543 33332 223333332 234567888999999999875
No 131
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=52.96 E-value=6.2 Score=44.59 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=19.6
Q ss_pred HHHHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 92 KEIALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 92 ~plV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
..++..+..|...++++ ++||||||.++.
T Consensus 188 ~~~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 188 NRAVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 33444445576655554 899999999964
No 132
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=52.41 E-value=9 Score=40.44 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=19.3
Q ss_pred HHhhcC---CCeeEEe--eccCCCCccccc
Q 004378 96 LSVVSG---INSSIFA--YGQTSSGKTYTM 120 (758)
Q Consensus 96 ~~vl~G---~N~tIfA--YGqTGSGKTyTM 120 (758)
..+..| -...++- ||+.|+|||+.+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 455555 4567888 999999999875
No 133
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=52.33 E-value=4.3 Score=41.08 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHhhcCCC--eeEEeeccCCCCcccccCC
Q 004378 95 ALSVVSGIN--SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 95 V~~vl~G~N--~tIfAYGqTGSGKTyTM~G 122 (758)
+..++.|.- -+++-||+.|+|||+....
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 445555632 4699999999999998644
No 134
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=51.84 E-value=5 Score=40.73 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.1
Q ss_pred cCCCeeEEeeccCCCCcccccC
Q 004378 100 SGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.|....++-||+.|+|||++..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHHH
Confidence 4544458999999999998753
No 135
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=49.98 E-value=6.8 Score=40.90 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=18.6
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+ ++..++||+|||.+.
T Consensus 38 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 38 CIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 4456677876 566679999999764
No 136
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.91 E-value=4.7 Score=43.56 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=19.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+.-.-...|.-.|+||||||++|
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34433334567888999999999997
No 137
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=49.12 E-value=6.4 Score=41.99 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=18.2
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.+..+++|.| ++..++||||||..
T Consensus 29 ~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 29 WAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 3445667875 57889999999983
No 138
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=49.06 E-value=6.7 Score=40.52 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=15.4
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
...++-||++|+|||+++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CSEEEECSSTTSSHHHHHH
T ss_pred CeEEEeeCcCCCCHHHHHH
Confidence 3567888899999999863
No 139
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=48.91 E-value=4.9 Score=41.76 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=18.0
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
...+..|. .|+-||++|+|||+.+.
T Consensus 40 ~~~l~~~~--~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 40 LIGICTGG--HILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHTC--CEEEESCCCHHHHHHHH
T ss_pred HHHHHcCC--eEEEECCCCCcHHHHHH
Confidence 33344443 57889999999999863
No 140
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.49 E-value=6.6 Score=40.88 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=14.4
Q ss_pred EEeeccCCCCcccccC
Q 004378 106 IFAYGQTSSGKTYTMT 121 (758)
Q Consensus 106 IfAYGqTGSGKTyTM~ 121 (758)
++-||+.|+|||+++.
T Consensus 39 ~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM 54 (354)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8889999999999873
No 141
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=48.42 E-value=7.3 Score=42.39 Aligned_cols=25 Identities=36% Similarity=0.424 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+ +++.++||||||.+.
T Consensus 86 ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 86 SIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCCchHHH
Confidence 3455678876 567779999999863
No 142
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=48.15 E-value=7.3 Score=44.97 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=18.9
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.|..++..... .+-.|+.|||||+|+..
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHHH
Confidence 35555543333 45679999999999743
No 143
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=48.15 E-value=56 Score=32.38 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 358 DKALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRV 420 (758)
Q Consensus 358 ~~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~ 420 (758)
...+|..|+.|+..|..+|. .++.+|+.|++++..++.+....+.++
T Consensus 18 ad~LV~~L~~En~~L~~ql~----------------~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLD----------------TKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 34578899999998888774 345556666666666665555444443
No 144
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=48.11 E-value=8.6 Score=42.91 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=20.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
.++..++.|-+-.+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 345566766566778899999999986
No 145
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.45 E-value=8.8 Score=38.97 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=17.1
Q ss_pred hcCCCeeEEeeccCCCCcccccC
Q 004378 99 VSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
-.|.-..++-||+.|+|||+...
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHHH
Confidence 34443348999999999998753
No 146
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.07 E-value=4.4 Score=45.79 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=27.9
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHH-HhhcCC----CeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSGI----NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G~----N~tIfAYGqTGSGKTyTM 120 (758)
.++||.|.+.+..-.++-+ ++..+-. .++..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~~~k~~l~~-lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHH-HHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcHHHHHHHHH-HHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 5688888775432222222 1221111 122222 234899999999999876
No 147
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=46.93 E-value=5.3 Score=40.62 Aligned_cols=23 Identities=13% Similarity=0.078 Sum_probs=16.0
Q ss_pred HhhcCCCeeEEeeccCCCCcccccC
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.++.|.++ +..++||+|||.+..
T Consensus 124 ~~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 124 EGLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHSEE--EECCCTTSCHHHHHH
T ss_pred HHHhcCCe--EEEcCCCCCcHHHHH
Confidence 34455444 338999999999863
No 148
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=46.77 E-value=5.5 Score=44.74 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=27.7
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHh-----hcC----CCeeEEeeccCCCCccccc
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSV-----VSG----INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~v-----l~G----~N~tIfAYGqTGSGKTyTM 120 (758)
.++|+.|.+.+..-+++. .++..+ +.. ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~~~~~~~l~-----e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELK-----EVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHH-----HHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHH-----HHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 468888877543322332 233221 221 2345999999999999875
No 149
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=46.64 E-value=8 Score=43.10 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++|.+..++..++||||||++.
T Consensus 150 i~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 150 LPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp HHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHcCCCCCEEEECCCCccHHHHH
Confidence 34566774456788899999999873
No 150
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.29 E-value=1.1e+02 Score=29.26 Aligned_cols=55 Identities=24% Similarity=0.340 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDL 423 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l 423 (758)
..+..|+.++..|+.+++. ....++++...++.+..++..|+.+...++.++..+
T Consensus 68 ~~I~~L~~El~~l~~ki~d---------Leeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 68 NTLAILQKELKSKEQEIRR---------LKEVIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777766532 233445555555555555555555544444444433
No 151
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.93 E-value=5 Score=41.90 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=18.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 51 AIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 4455677876 566789999999873
No 152
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=45.58 E-value=8.2 Score=39.62 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=17.4
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 344566632 3567789999999874
No 153
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=45.49 E-value=9 Score=37.30 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=22.3
Q ss_pred hHHHHHHhhcC-C--CeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVSG-I--NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~G-~--N~tIfAYGqTGSGKTyTM~ 121 (758)
+-+-++.++.| + ...+.-+|++|+|||..+.
T Consensus 9 G~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~ 42 (243)
T 1n0w_A 9 GSKELDKLLQGGIETGSITEMFGEFRTGKTQICH 42 (243)
T ss_dssp SCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHH
T ss_pred CChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHH
Confidence 34556777754 2 3467889999999999863
No 154
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=45.48 E-value=9.1 Score=42.06 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.| ++..++||||||.+.
T Consensus 15 ~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 3445577877 566789999999774
No 155
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=44.62 E-value=11 Score=43.24 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=19.7
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++..++.|.+ +++.++||+|||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 34556678887 567789999999764
No 156
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=44.46 E-value=1.3e+02 Score=24.89 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQ 412 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q 412 (758)
...++|++|+..|+.++.+.... .++ +.-.+...++.+|.++++.+.++
T Consensus 6 ~~~~~l~~E~~~lk~E~~stSaQ---DeF-AKWaKL~Rk~DKl~~ele~l~~~ 54 (65)
T 3sja_C 6 KKYLAKVKERHELKEFNNSISAQ---DNY-AKWTKNNRKLDSLDKEINNLKDE 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTT---TTH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchH---HHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999765332 223 33333344445555555544443
No 157
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=44.35 E-value=10 Score=44.44 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=28.5
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.||.|++. +.. ...+++.+.......++-||++|+|||+.+.++
T Consensus 184 ~~d~~iGr----~~~----i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~l 227 (758)
T 1r6b_X 184 GIDPLIGR----EKE----LERAIQVLCRRRKNNPLLVGESGVGKTAIAEGL 227 (758)
T ss_dssp CSCCCCSC----HHH----HHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCccCC----HHH----HHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHH
Confidence 46666653 222 333444445555666888999999999987653
No 158
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.99 E-value=42 Score=30.56 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
...|..|++++..|+...+.++.++.+|.+
T Consensus 34 ~~~~~~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 34 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666655554
No 159
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=43.80 E-value=8.2 Score=46.15 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=28.9
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gi 123 (758)
.||.|++.+ + .+..++..+..+....++-||++|+|||+.+.++
T Consensus 168 ~ld~viGr~----~----~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~l 211 (854)
T 1qvr_A 168 KLDPVIGRD----E----EIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGL 211 (854)
T ss_dssp CSCCCCSCH----H----HHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHH
T ss_pred CCcccCCcH----H----HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHH
Confidence 566666543 2 3344454445565556788999999999987653
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=43.78 E-value=13 Score=36.09 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=19.8
Q ss_pred hHHHHHHhhc--CCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVS--GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~--G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+++.+.. +-.-.|.-.|++|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3444454442 34456677899999999875
No 161
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=43.26 E-value=10 Score=41.44 Aligned_cols=24 Identities=33% Similarity=0.446 Sum_probs=17.7
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..++.|.| ++..++||||||.+.
T Consensus 13 i~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 13 ALPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEEeCCCChHHHHH
Confidence 445567876 466789999999763
No 162
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=42.83 E-value=1.1e+02 Score=25.70 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 364 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 364 ~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
.+..-+..|+..+-... ....+....|...-..|..|+.++.+|+.+.+.+..+++.|.+.+..
T Consensus 16 ~in~~f~~Lr~lvP~~~--~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 16 HIKDSFHSLRDSVPSLQ--GEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHTTSGGGT--TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555443211 12234566677777778888888888888888888888887777653
No 163
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=42.35 E-value=11 Score=36.17 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=20.1
Q ss_pred HHHHHhhc-CC--CeeEEeeccCCCCcccccC
Q 004378 93 EIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 93 plV~~vl~-G~--N~tIfAYGqTGSGKTyTM~ 121 (758)
+.++.++. |+ ...+.-+|++|+|||+.+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHH
Confidence 44566665 33 2356678999999998863
No 164
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=41.56 E-value=9.6 Score=43.85 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=17.1
Q ss_pred CeeEEeeccCCCCcccccCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gi 123 (758)
+..++..|++|||||+|+..+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~l 184 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKL 184 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHH
Confidence 356788999999999997543
No 165
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.34 E-value=11 Score=37.97 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=20.2
Q ss_pred hhHHHHHHhhcCCC-----eeEEeeccCCCCccccc
Q 004378 90 GAKEIALSVVSGIN-----SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 90 ~v~plV~~vl~G~N-----~tIfAYGqTGSGKTyTM 120 (758)
+...++..++.|+. ..|+..|+.|||||+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 14 ALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHH
T ss_pred HHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHH
Confidence 33334444454433 46889999999999863
No 166
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=41.33 E-value=14 Score=35.57 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=19.6
Q ss_pred HHHHHHhhc---CCCeeEEeeccCCCCccccc
Q 004378 92 KEIALSVVS---GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 92 ~plV~~vl~---G~N~tIfAYGqTGSGKTyTM 120 (758)
..+++.++. .-...|...|.+|||||+.+
T Consensus 8 ~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 8 DFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 334444443 33456888899999999875
No 167
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=41.13 E-value=1.4e+02 Score=25.38 Aligned_cols=65 Identities=28% Similarity=0.320 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 363 ~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
..|..-+..|+..+-..... ........|.+.-..|..|+.+..++..+.+.++.+++.|.+.+.
T Consensus 14 ~~lk~~f~~Lr~~vP~~~~~-~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 14 AHLRLSLEKLKGLVPLGPDS-SRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHSSCCCSSS-CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555556666665432111 112235667777777888888888888888888887777776653
No 168
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=41.08 E-value=12 Score=39.09 Aligned_cols=20 Identities=15% Similarity=0.391 Sum_probs=16.8
Q ss_pred CCCeeEEeeccCCCCccccc
Q 004378 101 GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 101 G~N~tIfAYGqTGSGKTyTM 120 (758)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45678899999999999864
No 169
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=40.80 E-value=10 Score=43.42 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++..+++|.+ ++..++||+|||.+.
T Consensus 15 ~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 15 VAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 3445667876 567789999999875
No 170
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=40.69 E-value=11 Score=41.01 Aligned_cols=23 Identities=22% Similarity=-0.052 Sum_probs=17.2
Q ss_pred HHhhcCCCeeEEeeccCCCCccccc
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..++.|.+ ++..|+||+|||.+.
T Consensus 103 ~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 103 ERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHhcCC--EEEEeCCCCCHHHHH
Confidence 34556654 667789999999985
No 171
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=40.48 E-value=17 Score=37.75 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999986
No 172
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=40.44 E-value=13 Score=41.89 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=19.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++..++.|-+--+++.++||||||.+.
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 445566555556788899999999863
No 173
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=40.27 E-value=4.2 Score=44.22 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=17.3
Q ss_pred CeeEEeeccCCCCcccccCCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGIT 124 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gii 124 (758)
+.-++.+|.||||||.++..++
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li 74 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELA 74 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHH
Confidence 5567889999999999864433
No 174
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=40.18 E-value=8.1 Score=36.43 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.4
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.+.-.|++|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56778999999999874
No 175
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=40.13 E-value=12 Score=35.71 Aligned_cols=30 Identities=27% Similarity=0.272 Sum_probs=22.4
Q ss_pred HHHHHHhhc-CCC--eeEEeeccCCCCcccccC
Q 004378 92 KEIALSVVS-GIN--SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 92 ~plV~~vl~-G~N--~tIfAYGqTGSGKTyTM~ 121 (758)
-+-++.++. |+. ..+.-+|++|+|||..+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHH
Confidence 355677775 554 468889999999998763
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=40.02 E-value=13 Score=36.87 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=18.1
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+++++-.|--. .-.|+.|||||+.+
T Consensus 14 ~~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHHhccCCCEE--EEECCCCCCHHHHH
Confidence 345555556544 44799999999986
No 177
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=39.77 E-value=12 Score=39.67 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=18.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccccC
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM~ 121 (758)
.+..++.| .++..++||+|||.++.
T Consensus 17 ~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 17 IYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 34556677 45567899999998863
No 178
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=39.66 E-value=7.8 Score=41.18 Aligned_cols=18 Identities=44% Similarity=0.565 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|+-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999875
No 179
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.38 E-value=56 Score=25.83 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 399 IQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 399 i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+++|..++.+|+.+.+.++.+++++.+.+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555544
No 180
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=38.13 E-value=8.9 Score=40.56 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=15.2
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999874
No 181
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=37.77 E-value=15 Score=35.38 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=20.4
Q ss_pred HHHHHhhc-CCC--eeEEeeccCCCCccccc
Q 004378 93 EIALSVVS-GIN--SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~-G~N--~tIfAYGqTGSGKTyTM 120 (758)
+-++.++. |+. ..+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 45566664 432 46778899999999886
No 182
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=37.62 E-value=14 Score=42.38 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=17.3
Q ss_pred HHhhcCCCeeEEeeccCCCCccccc
Q 004378 96 LSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 96 ~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
..++.|.| ++..++||+|||...
T Consensus 23 ~~~l~g~~--~iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 23 LPAMKGKN--TIICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHcCCC--EEEEcCCCchHHHHH
Confidence 44567877 467789999999863
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=37.47 E-value=9.7 Score=42.02 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.0
Q ss_pred hhcCCCeeEEeeccCCCCccccc
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++.|++..|...|++|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999865
No 184
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=37.21 E-value=11 Score=41.47 Aligned_cols=24 Identities=13% Similarity=0.012 Sum_probs=18.6
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
+..+++|.+. +++.|+||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4566788765 56779999999986
No 185
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=37.11 E-value=16 Score=40.08 Aligned_cols=36 Identities=8% Similarity=0.085 Sum_probs=24.2
Q ss_pred CCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 80 DCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 80 ~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..|.+++..+. ..+..| ...++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 446777766533 233333 347888999999999876
No 186
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=37.09 E-value=14 Score=39.59 Aligned_cols=22 Identities=36% Similarity=0.282 Sum_probs=15.9
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+-.|.+. .-.|+||||||+++
T Consensus 171 ~i~~G~~i--~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVI--VVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCE--EEEESSSSCHHHHH
T ss_pred HHhcCCEE--EEECCCCCCHHHHH
Confidence 34456654 44599999999987
No 187
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=36.95 E-value=53 Score=28.13 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRM 426 (758)
Q Consensus 393 ~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~ 426 (758)
.+.+.-|.+|+.+..++.+..+.++.+.++|.+.
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~ 75 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSA 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777778888888887777777654
No 188
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=36.63 E-value=11 Score=34.20 Aligned_cols=16 Identities=31% Similarity=0.341 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|.+|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999864
No 189
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.58 E-value=20 Score=37.49 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..+.-.|++|||||+++
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 36778899999999996
No 190
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=36.35 E-value=10 Score=36.03 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999875
No 191
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.12 E-value=9.5 Score=40.85 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=14.8
Q ss_pred CeeEEeeccCCCCcccccC
Q 004378 103 NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~ 121 (758)
|.-++..|+||||||+++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~ 53 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAK 53 (392)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHH
Confidence 3345667999999999873
No 192
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=36.00 E-value=14 Score=42.47 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
|..++. +..++..|+.|||||+|+..
T Consensus 189 v~~~l~--~~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 189 VKTVLQ--RPLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp HHHHHT--CSEEEEECCTTSCHHHHHHH
T ss_pred HHHHhc--CCCeEEECCCCCCHHHHHHH
Confidence 444443 33567799999999999754
No 193
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=35.95 E-value=83 Score=35.27 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQDSRQ 435 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~~~~~~ 435 (758)
+++.+++.+.+++++...+.+++.++++.+...-+.++
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~~~~ 589 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRR 589 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34445556666666666777777777877777765554
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=35.64 E-value=9.9 Score=39.64 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=16.7
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+++|++..|...|++|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 367899999999999999999765
No 195
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=34.90 E-value=16 Score=41.22 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=19.9
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
-++..++.|. -|+-||++|+|||+....
T Consensus 33 ~l~~al~~~~--~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 33 LCLLAALSGE--SVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHTC--EEEEECCSSSSHHHHHHH
T ss_pred HHHHHHhcCC--eeEeecCchHHHHHHHHH
Confidence 3444455554 578899999999998743
No 196
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=34.87 E-value=13 Score=36.20 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
-.|.-.|++|||||+++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 35667899999999875
No 197
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=34.85 E-value=22 Score=37.72 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=15.2
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...|.-.|++|+|||+++
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356778899999999986
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=34.65 E-value=17 Score=43.23 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=34.4
Q ss_pred cccccCeecCCCCChhHHHhhhhHHHHH-HhhcC----CCeeEEeeccCCCCccccc
Q 004378 69 SAYTFDRVFWGDCSTTQVYEDGAKEIAL-SVVSG----INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 69 ~~F~FD~VF~~~asQ~eVy~~~v~plV~-~vl~G----~N~tIfAYGqTGSGKTyTM 120 (758)
..+.||.|.+.+..-+.+.+.+..|+.. .++.. ....|+-||++|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3578888888776666666655544432 22222 2346899999999999875
No 199
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=34.62 E-value=11 Score=35.68 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.+.-.|++|||||+.+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999864
No 200
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.14 E-value=21 Score=41.78 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
.||.|.+. ++. ...++..+..+....++-||++|+|||....+
T Consensus 178 ~ld~iiG~----~~~----i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 178 SLDPVIGR----SKE----IQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp CSCCCCCC----HHH----HHHHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCccCc----hHH----HHHHHHHHhCCCCCCeEEECCCCCCHHHHHHH
Confidence 46666554 332 33344444456666789999999999987644
No 201
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=34.13 E-value=15 Score=44.02 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=24.8
Q ss_pred eeEEeeccCCCCccccc-----------------------CCCCcchHHHHHHHHHhc
Q 004378 104 SSIFAYGQTSSGKTYTM-----------------------TGITECTVADIFDYIHRH 138 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM-----------------------~Gii~rav~dLF~~i~~~ 138 (758)
..|+-||+.|+|||+.. .|-.+..++.+|......
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~ 569 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQA 569 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHc
Confidence 35889999999999765 244455677777766543
No 202
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=34.07 E-value=22 Score=41.77 Aligned_cols=16 Identities=38% Similarity=0.372 Sum_probs=14.6
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999875
No 203
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.86 E-value=1.4e+02 Score=30.24 Aligned_cols=12 Identities=8% Similarity=0.385 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHh
Q 004378 365 LQKELARLESEL 376 (758)
Q Consensus 365 Lq~Ei~~L~~eL 376 (758)
++..+.+.+.+|
T Consensus 72 ~~~ri~~~~~~l 83 (256)
T 3na7_A 72 TNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444444
No 204
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=33.78 E-value=11 Score=35.76 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.6
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
|.-.|++|||||+++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999886
No 205
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.74 E-value=17 Score=40.80 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...++-||++|+|||++.
T Consensus 77 ~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 357889999999999986
No 206
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=33.58 E-value=45 Score=36.51 Aligned_cols=14 Identities=14% Similarity=-0.080 Sum_probs=8.7
Q ss_pred CcchHHHHHHHHHh
Q 004378 124 TECTVADIFDYIHR 137 (758)
Q Consensus 124 i~rav~dLF~~i~~ 137 (758)
.|.+.+++++....
T Consensus 139 ~P~Twdel~~~a~~ 152 (471)
T 3mq9_A 139 PPKTWEEIPALDKE 152 (471)
T ss_dssp CCSBGGGHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 45667777765543
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=33.43 E-value=16 Score=35.53 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=18.3
Q ss_pred HHHhhcC-C--CeeEEeeccCCCCccccc
Q 004378 95 ALSVVSG-I--NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G-~--N~tIfAYGqTGSGKTyTM 120 (758)
++.++.| + ...+.-+|++|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555533 2 346778999999999875
No 208
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=33.23 E-value=1.7e+02 Score=25.11 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 364 HLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 364 ~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
.+..-+..|+..+-...+. ...+....|.+.-..|+.|+.+...+..+.+.++.+.+.|.+.+.
T Consensus 20 ~ln~~f~~Lr~~vP~~~~~-~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 20 ELKRSFFALRDQIPELENN-EKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHTTCGGGTTC-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555332111 123345666766677777777777777777777777666666554
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=33.20 E-value=12 Score=38.59 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.8
Q ss_pred CCeeEEeeccCCCCccccc
Q 004378 102 INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (758)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567888999999999875
No 210
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.07 E-value=1.9e+02 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 390 ALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 390 ~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
..+.....++..++.++..+..+...+..+++.+.+.+.
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777777777777777777777776666655
No 211
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.89 E-value=1.2e+02 Score=23.04 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 387 DYVALLRKKDLQIQKMEREIRELTKQRDLAQ 417 (758)
Q Consensus 387 ~~~~~l~~~~~~i~~le~ei~el~~q~~~~q 417 (758)
+....+..-+.+|.+.+++|.+|++.+..++
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777777777776655443
No 212
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=32.46 E-value=33 Score=30.40 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSR 419 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~ 419 (758)
...++|++|+..|+.++...... |.-+.-.+...++.+|.++++.+.+++...+..
T Consensus 30 ~~~~~lk~E~~~lk~E~~stSaQ----DEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~ 85 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSISAQ----DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKA 85 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCTT----TCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999765433 223344444556666666666666555544433
No 213
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=32.44 E-value=12 Score=36.26 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.+.-.|++|||||+.+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999886
No 214
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=32.21 E-value=12 Score=35.03 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|.-.|+.|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35778899999999875
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=32.01 E-value=26 Score=40.96 Aligned_cols=17 Identities=35% Similarity=0.362 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 57999999999999885
No 216
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=31.89 E-value=96 Score=22.30 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 400 QKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 400 ~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
.+||..+++|......+++++..|..++|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 456777788888888888888888877764
No 217
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.60 E-value=70 Score=26.04 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
...+..|+.++.+|..+...+..++..|..+++
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888888888888888776664
No 218
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=31.29 E-value=13 Score=37.97 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=16.5
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 5689999999999999854
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=31.27 E-value=8.6 Score=38.79 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=17.1
Q ss_pred CeeEEeeccCCCCcccccCCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~Gi 123 (758)
...++-||..|+|||..+.++
T Consensus 12 G~i~litG~mGsGKTT~ll~~ 32 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR 32 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHH
Confidence 356788999999999987653
No 220
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=31.14 E-value=13 Score=35.73 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=12.7
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
+.-.|+.|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999976
No 221
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=31.03 E-value=15 Score=33.83 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=13.2
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.|+-.|..|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578899999999985
No 222
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=31.00 E-value=1.3e+02 Score=32.14 Aligned_cols=51 Identities=22% Similarity=0.182 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
++.|..|+.+|+..+ ...+.+|+.|+..+..++.+++.+++++.++...+.
T Consensus 7 ~~~~~~~~~~~e~~i----------------~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 7 VQKILEEVRILEQIG----------------VSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH----------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666665543 234556677777777777777777777766665543
No 223
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=31.00 E-value=1.9e+02 Score=24.62 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 004378 359 KALVKHLQKELARLESELRSPA 380 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~ 380 (758)
...|..|..+++.|+.+|..+.
T Consensus 28 e~~Ie~LE~~i~~le~~ladp~ 49 (89)
T 2lw1_A 28 PQLLEDLEAKLEALQTQVADAS 49 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhCcc
Confidence 3457777888888888886654
No 224
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.93 E-value=1.5e+02 Score=25.92 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 360 ALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 360 ~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
.-++.|+.+.+.|+.++...... .....-..-+.+|..|.+++..+..++..++.++..|.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~----~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQ----GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777665422110 00111112244566666666666655555555555443
No 225
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.79 E-value=98 Score=38.25 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.9
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.|-||+.-|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 689999999999999999876
No 226
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=30.62 E-value=21 Score=43.68 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=17.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
+..++.|.+ ++..|+||||||.+
T Consensus 48 I~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 48 VYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHcCCC--EEEEECCCCcHHHH
Confidence 445667754 67789999999965
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=30.54 E-value=16 Score=38.39 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|.-.|++|||||+++
T Consensus 103 ~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999986
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=30.30 E-value=15 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|.-.|++|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5667899999999865
No 229
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=30.11 E-value=7.7 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.8
Q ss_pred eEEeeccCCCCcccccCCC
Q 004378 105 SIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gi 123 (758)
.++-||+.|+|||+.+.++
T Consensus 5 i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4678999999999987653
No 230
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=30.10 E-value=30 Score=37.28 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|.-.|++|||||+|+
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 36778899999999986
No 231
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.07 E-value=14 Score=35.90 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.8
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.+.-.|++|||||+.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 45568999999999873
No 232
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=30.05 E-value=16 Score=34.17 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999864
No 233
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=30.04 E-value=16 Score=40.11 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=16.1
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++.|.+ ++..|+||+|||.+.
T Consensus 124 ~~~~~~~--~ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 124 EGLVNRR--RILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHSE--EEEECCSTTTHHHHH
T ss_pred HHHhcCC--cEEEeCCCCCHHHHH
Confidence 3444544 466799999999986
No 234
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.02 E-value=29 Score=41.35 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 68999999999999875
No 235
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=29.90 E-value=22 Score=41.94 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=18.4
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.| ++..++||||||.+.
T Consensus 256 ~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 3445577876 566789999999874
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=29.89 E-value=16 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.5
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-.|.+|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999875
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=29.78 E-value=20 Score=37.31 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCcccccC
Q 004378 104 SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (758)
..|...|++|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999973
No 238
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=29.69 E-value=27 Score=41.07 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=25.1
Q ss_pred HHHhhhhHHHHHHh-hcCCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSV-VSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~v-l~G~N~tIfAYGqTGSGKTyTM 120 (758)
.||.- +......+ -.+.|-||+.-|.+|||||.+.
T Consensus 76 Hifai-A~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYAL-ANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHH-HHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHH-HHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 36643 33333333 3699999999999999999874
No 239
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.51 E-value=29 Score=36.07 Aligned_cols=36 Identities=28% Similarity=0.142 Sum_probs=21.9
Q ss_pred HHHhhhhHHHHHHhh--cCCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSVV--SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~vl--~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+++.++..+..... .+-...|.-.|.+|||||+.+
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHH
Confidence 345554444443222 244456777899999999875
No 240
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=29.41 E-value=17 Score=41.17 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=16.3
Q ss_pred CCeeEEeeccCCCCccccc
Q 004378 102 INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (758)
.++.++..|..|||||+|+
T Consensus 21 ~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH
Confidence 3566788899999999998
No 241
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=29.31 E-value=21 Score=43.10 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=18.1
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 445577877 456789999999875
No 242
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=29.31 E-value=24 Score=36.02 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=15.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999875
No 243
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=29.24 E-value=17 Score=35.54 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=9.2
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|.-.|++|||||+++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999885
No 244
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.20 E-value=15 Score=34.52 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.4
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.+.-.|+.|||||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4567899999999875
No 245
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=28.79 E-value=1.4e+02 Score=23.71 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+.+...|+.++.+|..+...++.++..|.+++
T Consensus 28 e~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 28 EKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666666666666655543
No 246
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=28.57 E-value=16 Score=34.05 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+..|.+|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 5788999999999864
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=28.35 E-value=16 Score=35.25 Aligned_cols=16 Identities=19% Similarity=0.378 Sum_probs=12.9
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.+.-.|++|||||.++
T Consensus 22 i~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999876
No 248
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=28.31 E-value=14 Score=41.56 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=18.1
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++..+++|.++ +..++||+|||.+.
T Consensus 33 ~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 33 IIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 34456788765 55679999999754
No 249
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=28.02 E-value=30 Score=41.18 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.|-||+.-|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999884
No 250
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=28.00 E-value=23 Score=42.20 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=18.9
Q ss_pred HHHhhcCCCeeEEeeccCCCCccccc
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
...+-.|....++..|+||||||...
T Consensus 381 ~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 381 RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 33444555556788999999999864
No 251
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=27.94 E-value=23 Score=40.44 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
+..++. +..++..|..|||||+++..
T Consensus 198 v~~~~~--~~~~~I~G~pGTGKTt~i~~ 223 (574)
T 3e1s_A 198 LDQLAG--HRLVVLTGGPGTGKSTTTKA 223 (574)
T ss_dssp HHHHTT--CSEEEEECCTTSCHHHHHHH
T ss_pred HHHHHh--CCEEEEEcCCCCCHHHHHHH
Confidence 334443 35667789999999999754
No 252
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=27.90 E-value=23 Score=42.33 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.0
Q ss_pred eeEEeeccCCCCcccccCCC
Q 004378 104 SSIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~Gi 123 (758)
..++..|+.|||||+|+..+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~ 395 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATI 395 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHH
Confidence 34678999999999998543
No 253
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.89 E-value=2.2e+02 Score=24.13 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 392 LRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 392 l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
+......|..++.++.+++.+....-...++|+
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~Ll 60 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLL 60 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554444333334433
No 254
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=27.82 E-value=1.9e+02 Score=21.68 Aligned_cols=44 Identities=41% Similarity=0.476 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 361 LVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQR 413 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~ 413 (758)
++.+|..|++.|+.+-... ....+.+++ .|.-|+++|..|.+..
T Consensus 4 lvaqlenevaslenenetl--------kkknlhkkd-liaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETL--------KKKNLHKKD-LIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------HHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHH--------HHhcccHHH-HHHHHHHHHHHHHHHh
Confidence 5778888888888764211 112222222 3455667766665543
No 255
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=27.78 E-value=15 Score=38.87 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=16.2
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+-.|.+ +.-.|+||||||+++
T Consensus 167 ~i~~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 167 GIAIGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHTCC--EEEEESTTSCHHHHH
T ss_pred hccCCCE--EEEECCCCCCHHHHH
Confidence 3445654 555799999999987
No 256
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=27.68 E-value=23 Score=42.19 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=18.5
Q ss_pred HHHhhcCCCeeEEeeccCCCCcccccCC
Q 004378 95 ALSVVSGINSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 95 V~~vl~G~N~tIfAYGqTGSGKTyTM~G 122 (758)
|..++.+ ..++..|+.|||||+|+..
T Consensus 365 v~~~l~~--~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 365 VKTVLQR--PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp HHHHHTS--SEEEEECCTTSCHHHHHHH
T ss_pred HHHhccC--CeEEEEcCCCCCHHHHHHH
Confidence 3444442 3467899999999999754
No 257
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=27.53 E-value=31 Score=41.17 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=25.1
Q ss_pred HHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
.||.- +......++ .+.|.||+.-|.+|||||.+.
T Consensus 122 Hifai-A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAI-ADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHH-HHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 35643 333333333 699999999999999999884
No 258
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.32 E-value=3.4e+02 Score=25.72 Aligned_cols=65 Identities=14% Similarity=0.143 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 004378 366 QKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCDQD 432 (758)
Q Consensus 366 q~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~~~ 432 (758)
.+.|..|-..|-... .+..+-...+++.+.+.+..++++++..++.+.+-.++++++..+.+...
T Consensus 70 akqIe~LIdsLPg~~--~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~~l 134 (151)
T 1yke_B 70 TRQINKLIDSLPGVD--VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDGIA 134 (151)
T ss_dssp HHHHHHHHHHCTTSS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666553221 12223344566666666667777777777777777777888777777653
No 259
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=27.28 E-value=20 Score=35.86 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=15.8
Q ss_pred eEEeeccCCCCccccc---CCCCc
Q 004378 105 SIFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM---~Gii~ 125 (758)
.+.-.|++|||||+.| .|+++
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 3566899999999876 46543
No 260
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=27.22 E-value=20 Score=26.36 Aligned_cols=32 Identities=28% Similarity=0.458 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
.+..+++.|+.|+.+.|.++.++..+.+.+|.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~l~~ 36 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKLVGE 36 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667888899999999999999888877653
No 261
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=26.99 E-value=95 Score=27.95 Aligned_cols=63 Identities=11% Similarity=0.190 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQK----M-EREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~----l-e~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.+-+++|++|+...+.+|-. ....|++-..+.++ + ...+..-+.....++.++.+|.+++.+.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~i---------ArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~ 101 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVT---------ARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678889999888888831 12223322222222 1 1222333344556677777777777654
No 262
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.98 E-value=1.7e+02 Score=23.54 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 395 ~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
.+.+...|+.+...|..+...++.++..|..++
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666655544
No 263
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.81 E-value=1.6e+02 Score=23.77 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+.+.|+.++.+|..+.+.++.+++.|..++
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554443
No 264
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=26.80 E-value=22 Score=38.69 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999884
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=26.73 E-value=30 Score=39.17 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=14.2
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|.-.|.+|||||+++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5778899999999986
No 266
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=26.72 E-value=1.9e+02 Score=21.93 Aligned_cols=35 Identities=14% Similarity=0.224 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 393 RKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 393 ~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
.+.+...+.|+..+.+|......++.+.+-|.+++
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 34444556677777777777777777777666654
No 267
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.68 E-value=92 Score=28.56 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
++++|+.+|..|..++..+..+++.|.+...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 3677777777777777777777776665543
No 268
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=26.62 E-value=18 Score=33.76 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999876
No 269
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.58 E-value=24 Score=33.72 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.2
Q ss_pred CCeeEEeeccCCCCccccc
Q 004378 102 INSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM 120 (758)
-...|.-.|.+|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456778899999999875
No 270
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=26.44 E-value=33 Score=42.68 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=25.2
Q ss_pred HHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
.||.- +.....+++ .+.|-||+.-|.+|||||.+.
T Consensus 151 Hi~ai-a~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 151 HIYAI-ADTAYRSMLQDREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEECCCSTTSSTTHHH
T ss_pred cHhhh-HHHHHHHHHhcCCCcEEEEecCCCCCccHHH
Confidence 35543 333333333 699999999999999999886
No 271
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=26.31 E-value=17 Score=35.65 Aligned_cols=15 Identities=20% Similarity=0.377 Sum_probs=12.5
Q ss_pred EEeeccCCCCccccc
Q 004378 106 IFAYGQTSSGKTYTM 120 (758)
Q Consensus 106 IfAYGqTGSGKTyTM 120 (758)
+.-.|++|||||+.+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999876
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=25.98 E-value=20 Score=33.33 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999853
No 273
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=25.96 E-value=33 Score=42.15 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.|-||+.-|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999884
No 274
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.94 E-value=2.9e+02 Score=23.95 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 397 LQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 397 ~~i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
.+|..-+++|+.|+++++..+.++..|.+
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666777777777777777777765
No 275
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=25.92 E-value=1.7e+02 Score=24.77 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 398 QIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 398 ~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
.|+.|.+.+.+.+++.+.++.++..|.+.+..
T Consensus 29 tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 29 ALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555444443
No 276
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=25.89 E-value=52 Score=34.26 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=13.9
Q ss_pred eEEeeccCCCCcccccC
Q 004378 105 SIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~ 121 (758)
.|...|..|+|||+++.
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56667999999999863
No 277
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=25.81 E-value=18 Score=35.16 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.6
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.+.-.|++|+|||+++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 4667899999999986
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=25.80 E-value=20 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999865
No 279
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=25.76 E-value=1.3e+02 Score=33.08 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 402 MEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 402 le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
.+.+|+.|+.+++.++++++.|.+.+..-
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34577777777777777777777666543
No 280
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=25.73 E-value=35 Score=40.80 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=19.5
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.|-||+.-|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999884
No 281
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=25.70 E-value=9.8 Score=37.33 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=16.0
Q ss_pred eEEeeccCCCCcccccCCC
Q 004378 105 SIFAYGQTSSGKTYTMTGI 123 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM~Gi 123 (758)
.++-||..|||||..+.++
T Consensus 10 i~v~~G~mgsGKTT~ll~~ 28 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRR 28 (191)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHH
Confidence 6788999999999887653
No 282
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=25.68 E-value=3.4e+02 Score=25.10 Aligned_cols=68 Identities=25% Similarity=0.388 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 359 KALVKHLQKELARLESELRSPAPASSTCDY---------VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~---------~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
..-+..+++++++|+..+........ .+| ...+..+..++.++ .+|+..++.++.++..+...+..
T Consensus 12 ~~KvAElekkv~~lek~lk~~~e~d~-e~y~ke~~~~~~qsele~k~aeLe~l----eeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 12 QAKIAELENQVHRLEQELKEIDESES-EDYAKEGFRAPLQSKLDAKKAKLSKL----EELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCC-------------CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhh-hHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44578899999999999987766532 122 22233333444443 66888888888888888888776
Q ss_pred CC
Q 004378 430 DQ 431 (758)
Q Consensus 430 ~~ 431 (758)
..
T Consensus 87 ~e 88 (125)
T 2pms_C 87 AE 88 (125)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 283
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=25.66 E-value=33 Score=41.29 Aligned_cols=21 Identities=29% Similarity=0.351 Sum_probs=19.5
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
++.|-||+.-|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999884
No 284
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.61 E-value=1.1e+02 Score=30.35 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 399 IQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 399 i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
+..|++++..|+..++.++.++.+|.+
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666655555555443
No 285
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=25.57 E-value=35 Score=41.84 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 86 VYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 86 Vy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
||.- +.....+++ .+.|-||+.-|.+|||||.+.
T Consensus 129 ifai-A~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 129 VYAV-TEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HHHH-HHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred HHHH-hHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 5542 333333333 699999999999999999884
No 286
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=25.51 E-value=28 Score=39.17 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=19.0
Q ss_pred hHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 91 AKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 91 v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+..+...+..|.++ ++-.+||+|||.+.
T Consensus 12 ~~~v~~~l~~~~~~--~~~a~TGtGKT~~~ 39 (551)
T 3crv_A 12 KDKVIEGLRNNFLV--ALNAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHHHHHTTCEE--EEECCTTSSHHHHH
T ss_pred HHHHHHHHHcCCcE--EEECCCCccHHHHH
Confidence 33455566678654 45568999998775
No 287
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=25.49 E-value=36 Score=40.66 Aligned_cols=21 Identities=33% Similarity=0.457 Sum_probs=19.6
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+.|-||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 799999999999999999884
No 288
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=25.44 E-value=19 Score=36.46 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.2
Q ss_pred hcCCCeeEEeeccCCCCccccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM 120 (758)
-.|+...|+..|.+|+|||..+
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHH
T ss_pred cCccEEEEEEECCCCCCHHHHH
Confidence 3688999999999999999754
No 289
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=25.42 E-value=22 Score=34.06 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=14.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5788999999999875
No 290
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=25.24 E-value=23 Score=34.90 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=23.4
Q ss_pred EEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 106 IfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
|+-.|+.||||++-. +|+..-..-+||+.
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence 678899999998654 58888788888864
No 291
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=25.16 E-value=28 Score=31.82 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHhhc-CCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVS-GINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~-G~N~tIfAYGqTGSGKTyTM 120 (758)
++..++. .....|...|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 4444555 46678899999999999765
No 292
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.02 E-value=49 Score=36.60 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
..|+..|.+|+|||+|+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp EEEEECCCTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4667779999999999643
No 293
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=24.74 E-value=22 Score=35.85 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.|+-.|++|||||+.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467899999999974
No 294
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=24.64 E-value=26 Score=38.45 Aligned_cols=15 Identities=27% Similarity=0.096 Sum_probs=12.8
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.++..|+||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 456779999999987
No 295
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=24.62 E-value=21 Score=32.99 Aligned_cols=17 Identities=24% Similarity=0.268 Sum_probs=14.1
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35778899999999864
No 296
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=24.61 E-value=23 Score=32.28 Aligned_cols=16 Identities=19% Similarity=0.054 Sum_probs=13.3
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999864
No 297
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=24.56 E-value=27 Score=35.63 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=15.3
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..++-||+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 58899999999999876
No 298
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=24.52 E-value=19 Score=41.80 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=15.2
Q ss_pred hcCCCeeEEeeccCCCCccccc
Q 004378 99 VSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 99 l~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+|.| ++..|+||||||...
T Consensus 37 ~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 37 LEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGTCE--EEEECCGGGCHHHHH
T ss_pred cCCCc--EEEEcCCccHHHHHH
Confidence 45544 778899999999764
No 299
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=24.44 E-value=26 Score=35.05 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=23.7
Q ss_pred eEEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 105 SIFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
.||-.|+.||||++-. +|+......+||+.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~ 66 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRA 66 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHH
Confidence 4788999999998754 58777777788764
No 300
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=24.27 E-value=31 Score=42.39 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=17.3
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTY 118 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTy 118 (758)
.+..+++|.| +++.++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3445677865 5778899999995
No 301
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=24.18 E-value=47 Score=38.56 Aligned_cols=75 Identities=13% Similarity=0.236 Sum_probs=47.4
Q ss_pred ccccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCcccccCCCCc-------------chHHHHHHHHH
Q 004378 70 AYTFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTMTGITE-------------CTVADIFDYIH 136 (758)
Q Consensus 70 ~F~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM~Gii~-------------rav~dLF~~i~ 136 (758)
.|..-.-|.|...|..-++. ++..+-.|... ....|.|||||||+|..++. .....|+..+.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~ 78 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFK 78 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHH
Confidence 46666778899999888765 45555666533 34569999999999964321 12445665555
Q ss_pred hc-cccceEEEeeh
Q 004378 137 RH-EERAFVLKFSA 149 (758)
Q Consensus 137 ~~-~~~~~~V~vS~ 149 (758)
.. ++..+....||
T Consensus 79 ~~~~~~~v~~fps~ 92 (661)
T 2d7d_A 79 EFFPNNAVEYFVSY 92 (661)
T ss_dssp HHCTTSEEEEECCC
T ss_pred HHcCCCcEEEcccc
Confidence 43 23344455554
No 302
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.14 E-value=4.2e+02 Score=24.38 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 367 KELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 367 ~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
+.|..|-..|-... .+..+-...+++.+.+.+..++++.+..++.+.+-.++++++..+
T Consensus 71 kqIe~LIdsLP~~~--~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 71 RQINKLIDSLPGVD--VSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHSTTTT--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666553222 112222333444444444455555555555555555555554443
No 303
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.08 E-value=78 Score=26.58 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 399 IQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 399 i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
.++|..+|--+.-+...++.+++++.+
T Consensus 48 ~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 48 TERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 456667777777777777777776653
No 304
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=24.05 E-value=25 Score=38.45 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=15.9
Q ss_pred hhcCCCeeEEeeccCCCCccccc
Q 004378 98 VVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 98 vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345555 567889999999984
No 305
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.03 E-value=1.7e+02 Score=25.38 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 396 DLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 396 ~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
......|+.+...|+.+.+.++.++..|..++..-
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34556688888888888888888888887777654
No 306
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=23.89 E-value=32 Score=38.69 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=17.6
Q ss_pred HHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 93 EIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 93 plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+...+..|.++ ++-.+||+|||.+.
T Consensus 18 ~v~~~~~~~~~~--~~~a~TGtGKT~~~ 43 (540)
T 2vl7_A 18 EAINALKHGKTL--LLNAKPGLGKTVFV 43 (540)
T ss_dssp HHHHHHHTTCEE--EEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCCcHHHHH
Confidence 344555677654 45568999999764
No 307
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=23.82 E-value=66 Score=33.23 Aligned_cols=64 Identities=22% Similarity=0.249 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhcCC----CCCCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 361 LVKHLQKELARLESELRSP----APASSTC---DYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL~~~----~~~~~~~---~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
.+..++.|+..|+..|... ....... .....+.....+.++|.++++++++++..++.+++.|.
T Consensus 25 ~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 25 ELEQLRREAAVLREQLENAVGSHAPTRSARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555777777777666322 1111100 11122222333344455555666666666655555544
No 308
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.72 E-value=50 Score=36.72 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=16.7
Q ss_pred CeeEEeeccCCCCcccccCC
Q 004378 103 NSSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM~G 122 (758)
...|+..|.+|+|||+|...
T Consensus 100 p~vIlivG~~G~GKTTt~~k 119 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAK 119 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHH
Confidence 45788899999999999744
No 309
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=23.63 E-value=40 Score=41.59 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=25.8
Q ss_pred HHHhhhhHHHHHHhh-cCCCeeEEeeccCCCCccccc
Q 004378 85 QVYEDGAKEIALSVV-SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 85 eVy~~~v~plV~~vl-~G~N~tIfAYGqTGSGKTyTM 120 (758)
.||.- +......++ .+.|-||+.-|.+|||||.+.
T Consensus 126 HIfai-A~~AY~~M~~~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 126 HVFAI-ADKAFRDMKVLKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp CHHHH-HHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHHH-HHHHHHHHHHhCCCceEEEecCCCCCHHHHH
Confidence 36643 443444443 799999999999999999885
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=23.61 E-value=21 Score=34.23 Aligned_cols=16 Identities=19% Similarity=0.381 Sum_probs=13.0
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|++|||||+.+
T Consensus 14 ~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999753
No 311
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=23.55 E-value=25 Score=32.59 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=13.2
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
..+-+|++|||||..|
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3467899999999875
No 312
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=23.49 E-value=28 Score=32.70 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=16.1
Q ss_pred cCCCeeEEeeccCCCCccccc
Q 004378 100 SGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 100 ~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..-.|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344567888999999999864
No 313
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=23.44 E-value=26 Score=34.77 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=15.1
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|+.|||||+.+ .|+++
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 455699999999876 46553
No 314
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=23.16 E-value=30 Score=42.42 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.8
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.++.|.+ ++..++||||||...
T Consensus 97 ~l~~g~~--vLV~apTGSGKTlva 118 (1010)
T 2xgj_A 97 CIDRGES--VLVSAHTSAGKTVVA 118 (1010)
T ss_dssp HHHHTCE--EEEECCTTSCHHHHH
T ss_pred HHHcCCC--EEEECCCCCChHHHH
Confidence 3456765 677889999999864
No 315
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=23.09 E-value=1.9e+02 Score=31.55 Aligned_cols=54 Identities=11% Similarity=0.302 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 362 VKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 362 i~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
+..++.++..|+++... ....+.+.+.+++.+++++.+.+..+..+.+++++|.
T Consensus 5 ~~~~~~~~~~l~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 5 IAALKEKIAALKEKIAA---------LKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp CHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566666666665421 1222333334444455555555555555555555554
No 316
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.00 E-value=23 Score=37.25 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=14.8
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-.|++|+|||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 46778899999999997
No 317
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=22.94 E-value=19 Score=41.64 Aligned_cols=30 Identities=30% Similarity=0.328 Sum_probs=20.6
Q ss_pred CChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 81 CSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 81 asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.-|.+++.. +++|.| ++..|+||||||...
T Consensus 28 ~~Q~~~i~~--------i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 28 PPQAEAVEK--------VFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCHHHHHH--------HTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHHHHHH--------HhCCCc--EEEEcCCccHHHHHH
Confidence 346666654 345655 567789999999864
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=22.89 E-value=24 Score=32.76 Aligned_cols=16 Identities=25% Similarity=0.465 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999864
No 319
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=22.87 E-value=2.8e+02 Score=25.20 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 004378 395 KDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVGCD 430 (758)
Q Consensus 395 ~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~~~ 430 (758)
...+++.-|..+.+|++.-..++..+++.+..+..+
T Consensus 50 L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 50 LVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666666666666666555555544
No 320
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=22.79 E-value=23 Score=33.01 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.6
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+..|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999875
No 321
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.70 E-value=25 Score=37.58 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=21.0
Q ss_pred HhhcCCCeeEEeeccCCCCccccc
Q 004378 97 SVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 97 ~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 357899999999999999999765
No 322
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=22.68 E-value=27 Score=40.27 Aligned_cols=20 Identities=25% Similarity=0.395 Sum_probs=16.9
Q ss_pred CCeeEEeeccCCCCcccccC
Q 004378 102 INSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 102 ~N~tIfAYGqTGSGKTyTM~ 121 (758)
.++.++..|..|||||+||.
T Consensus 14 ~~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 14 VTGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp CSSEEEECCCTTSCHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHH
Confidence 36678888999999999994
No 323
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=22.42 E-value=35 Score=38.66 Aligned_cols=13 Identities=23% Similarity=0.301 Sum_probs=0.0
Q ss_pred CCCCCcccccccc
Q 004378 688 FPGRPEGFQKKLF 700 (758)
Q Consensus 688 ~~~r~~~~~~~~~ 700 (758)
|.|....|.+|++
T Consensus 483 ~~g~ld~~~~rhp 495 (562)
T 3ghg_A 483 GIGTLDGFRHRHP 495 (562)
T ss_dssp -------------
T ss_pred cccchhhhhhhCc
Confidence 4467777777777
No 324
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=22.38 E-value=27 Score=41.43 Aligned_cols=15 Identities=40% Similarity=0.472 Sum_probs=12.5
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.++..|+||||||..
T Consensus 111 ~vii~gpTGSGKTtl 125 (773)
T 2xau_A 111 IMVFVGETGSGKTTQ 125 (773)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 466779999999993
No 325
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=22.33 E-value=24 Score=41.33 Aligned_cols=15 Identities=60% Similarity=0.851 Sum_probs=13.0
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.|+..|+||||||+.
T Consensus 157 ~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 157 IIFHSGPTNSGKTYH 171 (677)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 578889999999983
No 326
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=22.31 E-value=1.4e+02 Score=24.83 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 389 VALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLLR 425 (758)
Q Consensus 389 ~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~ 425 (758)
...++.++..|..|+.++.+-..+...++.++..+..
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555555555555555444433
No 327
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=22.30 E-value=42 Score=35.03 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=19.5
Q ss_pred HHHHhhcCC-CeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGI-NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~-N~tIfAYGqTGSGKTyTM 120 (758)
+...+-.|. ...++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 344444554 446889999999999886
No 328
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=22.29 E-value=45 Score=41.37 Aligned_cols=27 Identities=15% Similarity=0.191 Sum_probs=19.7
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
++..+-.|...-++..|+||+|||.+.
T Consensus 615 il~~~~~g~p~d~ll~~~TGsGKT~va 641 (1151)
T 2eyq_A 615 VLSDMCQPLAMDRLVCGDVGFGKTEVA 641 (1151)
T ss_dssp HHHHHHSSSCCEEEEECCCCTTTHHHH
T ss_pred HHHHHhcCCcCcEEEECCCCCCHHHHH
Confidence 333444577667889999999999763
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=22.27 E-value=27 Score=32.46 Aligned_cols=16 Identities=19% Similarity=0.356 Sum_probs=13.8
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999864
No 330
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=22.24 E-value=30 Score=42.87 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=18.5
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.+ ++..|+||||||...
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHHH
Confidence 3445577765 577899999999764
No 331
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=22.21 E-value=29 Score=35.17 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=15.5
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|++|||||+.+ .|+++
T Consensus 36 ~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 456799999999987 56553
No 332
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=22.02 E-value=26 Score=33.13 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 12 ~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 12 NILITGTPGTGKTSMA 27 (184)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4888999999999863
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=21.99 E-value=24 Score=33.70 Aligned_cols=16 Identities=44% Similarity=0.306 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|.-.|++|||||+.+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999875
No 334
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=21.96 E-value=1.8e+02 Score=35.91 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=7.2
Q ss_pred EEcccEEEEecC
Q 004378 179 VVEKVTEEILKD 190 (758)
Q Consensus 179 ~V~gLte~~V~S 190 (758)
+.-|.|.+.++.
T Consensus 742 ~~~G~TKVF~r~ 753 (1080)
T 2dfs_A 742 YQFGKTKIFFRA 753 (1080)
T ss_dssp EEECSSEEEECT
T ss_pred heeccccchhcc
Confidence 444666666665
No 335
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.93 E-value=1.8e+02 Score=21.08 Aligned_cols=30 Identities=7% Similarity=0.259 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004378 400 QKMEREIRELTKQRDLAQSRVEDLLRMVGC 429 (758)
Q Consensus 400 ~~le~ei~el~~q~~~~q~~~~~l~~~~~~ 429 (758)
.+++..+++|..+...+++++..+.+++|.
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 456777788888888888888888877764
No 336
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=21.90 E-value=42 Score=32.17 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=20.9
Q ss_pred EEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 106 IfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
|+-.|..|||||+.. +|+.-..+.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 566899999999875 46655556566554
No 337
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=21.89 E-value=30 Score=35.79 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=15.4
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|++|||||+.+ .|+++
T Consensus 37 ~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHHcCCC
Confidence 445799999999987 57553
No 338
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=21.74 E-value=1.2e+02 Score=25.88 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 004378 361 LVKHLQKELARLESEL 376 (758)
Q Consensus 361 li~~Lq~Ei~~L~~eL 376 (758)
-+++|++|+...+.+|
T Consensus 6 ~l~eLq~e~~~~E~QL 21 (78)
T 2ic6_A 6 TLKEVQDNITLHEQRL 21 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677888887777777
No 339
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=21.73 E-value=26 Score=32.07 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+..
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999864
No 340
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=21.71 E-value=26 Score=34.74 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=20.3
Q ss_pred eeEEeeccCCCCccccc---C---CCCcchHHHH
Q 004378 104 SSIFAYGQTSSGKTYTM---T---GITECTVADI 131 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM---~---Gii~rav~dL 131 (758)
-.|+-.|+.|||||+.+ . |+......++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 46788899999999977 3 7665444443
No 341
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=21.69 E-value=59 Score=30.53 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.7
Q ss_pred eeEEeeccCCCCcccccC
Q 004378 104 SSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~ 121 (758)
..+.-.|+.|+|||..+-
T Consensus 34 e~v~L~G~nGaGKTTLlr 51 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTR 51 (158)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 356678999999999874
No 342
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=21.67 E-value=41 Score=35.50 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=23.1
Q ss_pred hHHHHHHhhc-CC--CeeEEeeccCCCCcccccC
Q 004378 91 AKEIALSVVS-GI--NSSIFAYGQTSSGKTYTMT 121 (758)
Q Consensus 91 v~plV~~vl~-G~--N~tIfAYGqTGSGKTyTM~ 121 (758)
+-+-++.++. |+ ...+.-||++|+|||..+.
T Consensus 107 G~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 107 GSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp SCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred CChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3456788886 44 3467889999999998753
No 343
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=21.52 E-value=35 Score=32.64 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEeeccCCCCccccc------CCCCcchHHHHHHH
Q 004378 106 IFAYGQTSSGKTYTM------TGITECTVADIFDY 134 (758)
Q Consensus 106 IfAYGqTGSGKTyTM------~Gii~rav~dLF~~ 134 (758)
|+-.|..|||||+.. +|+.-..+.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRA 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHH
Confidence 667899999999875 36555555555554
No 344
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.47 E-value=51 Score=34.14 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=14.4
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
.-.|--.|++|||||+++
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345667799999999875
No 345
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=21.41 E-value=3.6e+02 Score=22.60 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 363 KHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREIRELTKQRDLAQSRVEDLL 424 (758)
Q Consensus 363 ~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei~el~~q~~~~q~~~~~l~ 424 (758)
..+...+..|+..+-... ...+....|...-..|+.|+.++..|..+.+.++.+++...
T Consensus 19 ~~in~~f~~L~~lvP~~~---~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~ 77 (82)
T 1am9_A 19 SSINDKIIELKDLVVGTE---AKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKSK 77 (82)
T ss_dssp HHHHHHHHHHHHHHTCSS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345666677777774321 23345667777777888888888888888888888777643
No 346
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=21.41 E-value=25 Score=39.74 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=15.1
Q ss_pred CeeEEeeccCCCCccccc
Q 004378 103 NSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 103 N~tIfAYGqTGSGKTyTM 120 (758)
...++-||++|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346888999999999875
No 347
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=21.40 E-value=31 Score=35.22 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=15.6
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|++|||||+.+ .|+++
T Consensus 36 ~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 456799999999987 57654
No 348
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.39 E-value=4.1e+02 Score=29.52 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 004378 363 KHLQKELARLESE 375 (758)
Q Consensus 363 ~~Lq~Ei~~L~~e 375 (758)
+.++.++...+..
T Consensus 480 ~~~~~~i~~~~~~ 492 (597)
T 3oja_B 480 QGLHAEIDTNLRR 492 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh
Confidence 3334444433333
No 349
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.37 E-value=31 Score=34.58 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.4
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|+.|||||+.+ .|+++
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 456799999999987 56543
No 350
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=21.35 E-value=27 Score=33.40 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=13.8
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|.-.|..|||||+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667899999999875
No 351
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.32 E-value=3.8e+02 Score=24.27 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q 004378 363 KHLQKELARLESEL 376 (758)
Q Consensus 363 ~~Lq~Ei~~L~~eL 376 (758)
..|..|+..++..+
T Consensus 13 ~~L~~E~e~~k~K~ 26 (111)
T 2v66_B 13 QRLKYEVEALKEKL 26 (111)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 352
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=21.24 E-value=39 Score=38.56 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=25.1
Q ss_pred ccCeecCCCCChhHHHhhhhHHHHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 72 TFDRVFWGDCSTTQVYEDGAKEIALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 72 ~FD~VF~~~asQ~eVy~~~v~plV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.|+.+++. ..+. ..+...+-.| ..++-+|++|+|||+.+
T Consensus 39 ~l~~i~G~----~~~l----~~l~~~i~~g--~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 39 LIDQVIGQ----EHAV----EVIKTAANQK--RHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHCCSC----HHHH----HHHHHHHHTT--CCEEEECCTTSSHHHHH
T ss_pred ccceEECc----hhhH----hhccccccCC--CEEEEEeCCCCCHHHHH
Confidence 45666653 3333 3344444566 36778999999999886
No 353
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=21.14 E-value=31 Score=34.55 Aligned_cols=21 Identities=19% Similarity=0.271 Sum_probs=16.1
Q ss_pred eEEeeccCCCCccccc---CCCCc
Q 004378 105 SIFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM---~Gii~ 125 (758)
.+.-.|++|||||+.+ .|+++
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 3566899999999976 56654
No 354
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=21.09 E-value=25 Score=34.51 Aligned_cols=16 Identities=38% Similarity=0.468 Sum_probs=13.7
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.++-+|..|||||+.+
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678899999999975
No 355
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=21.06 E-value=25 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.7
Q ss_pred eeEEeeccCCCCcccccCC
Q 004378 104 SSIFAYGQTSSGKTYTMTG 122 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM~G 122 (758)
.-++..|.||||||+.+..
T Consensus 215 pHlLIaG~TGSGKS~~L~t 233 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNA 233 (574)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHH
Confidence 4578899999999998744
No 356
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=21.00 E-value=32 Score=35.08 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=15.3
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|++|||||+.+ .|+++
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 455699999999976 56554
No 357
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.99 E-value=2e+02 Score=23.20 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004378 397 LQIQKMEREIRELTKQRDLAQSRVEDLLRMV 427 (758)
Q Consensus 397 ~~i~~le~ei~el~~q~~~~q~~~~~l~~~~ 427 (758)
..+..|+.+..+|..+.+.+..++..|...+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777666554
No 358
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=20.96 E-value=27 Score=32.34 Aligned_cols=15 Identities=20% Similarity=0.147 Sum_probs=13.0
Q ss_pred eEEeeccCCCCcccc
Q 004378 105 SIFAYGQTSSGKTYT 119 (758)
Q Consensus 105 tIfAYGqTGSGKTyT 119 (758)
.|+-.|..|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999975
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=20.93 E-value=30 Score=32.02 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=10.1
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-.|..|||||+..
T Consensus 6 ~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTA 22 (183)
T ss_dssp CEEEEECCC----CHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35888999999999853
No 360
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.89 E-value=33 Score=39.68 Aligned_cols=17 Identities=29% Similarity=0.368 Sum_probs=13.9
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..++..|+||||||...
T Consensus 47 ~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CcEEEEcCCCCcHHHHH
Confidence 44677889999999875
No 361
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=20.80 E-value=31 Score=34.28 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=15.1
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|+.|||||+.| .|+++
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 345799999999987 46543
No 362
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.72 E-value=2.2e+02 Score=31.00 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 004378 359 KALVKHLQKELARLESELRSPAPASSTCDYVALLRKKDLQIQKMEREI 406 (758)
Q Consensus 359 ~~li~~Lq~Ei~~L~~eL~~~~~~~~~~~~~~~l~~~~~~i~~le~ei 406 (758)
.++..+|++.|..|+..+...-+. -..+...+++.-.+|++||..|
T Consensus 112 ~e~s~eLe~~i~~lk~~V~~q~~~--ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 112 KQINEDLRSRIEILRRKVIEQVQR--INLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777766543221 1112333444445566666555
No 363
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.69 E-value=4.3e+02 Score=26.56 Aligned_cols=35 Identities=0% Similarity=0.098 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004378 394 KKDLQIQKMEREIRELTKQRDLAQSRVEDLLRMVG 428 (758)
Q Consensus 394 ~~~~~i~~le~ei~el~~q~~~~q~~~~~l~~~~~ 428 (758)
....++..++.++..+..+.+.++.++....+.++
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555444443
No 364
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.59 E-value=31 Score=34.25 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=14.8
Q ss_pred HHHHhhcCCCeeEEeeccCCCCcccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYT 119 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyT 119 (758)
+|.......--..|-||+.|||||.-
T Consensus 11 ~~~~~~~~~g~l~fiyG~MgsGKTt~ 36 (195)
T 1w4r_A 11 LVPRGSKTRGQIQVILGPMFSGKSTE 36 (195)
T ss_dssp --------CCEEEEEEECTTSCHHHH
T ss_pred ccccCCCCceEEEEEECCCCCcHHHH
Confidence 33334444445789999999999943
No 365
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=20.52 E-value=33 Score=34.62 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=15.6
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+.-.|++|||||+.+ .|+++
T Consensus 38 ~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 456799999999977 56553
No 366
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=20.36 E-value=30 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.2
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|+-.|..|||||+..
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999864
No 367
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=20.29 E-value=42 Score=41.50 Aligned_cols=25 Identities=28% Similarity=0.193 Sum_probs=19.0
Q ss_pred HHHHhhcCCCeeEEeeccCCCCccccc
Q 004378 94 IALSVVSGINSSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 94 lV~~vl~G~N~tIfAYGqTGSGKTyTM 120 (758)
.+..++.|.| +++.++||||||...
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl~~ 110 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTTFG 110 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHHHH
Confidence 4556678876 577889999999843
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=20.23 E-value=30 Score=32.29 Aligned_cols=16 Identities=25% Similarity=0.212 Sum_probs=13.5
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.|+-.|..|||||+.-
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIG 19 (184)
T ss_dssp SEEEECSTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4778899999999864
No 369
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=20.23 E-value=44 Score=36.22 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=14.4
Q ss_pred eeEEeeccCCCCccccc
Q 004378 104 SSIFAYGQTSSGKTYTM 120 (758)
Q Consensus 104 ~tIfAYGqTGSGKTyTM 120 (758)
..|.-+|+.|+|||+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36778999999999875
No 370
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=20.15 E-value=4.8e+02 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004378 390 ALLRKKDLQIQKMEREIRELTKQRDLAQS 418 (758)
Q Consensus 390 ~~l~~~~~~i~~le~ei~el~~q~~~~q~ 418 (758)
..+..+...+..++..|.+|++++..+.+
T Consensus 75 ~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 75 STLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777778888888777765443
No 371
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=20.08 E-value=35 Score=34.94 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=15.3
Q ss_pred EEeeccCCCCccccc---CCCCc
Q 004378 106 IFAYGQTSSGKTYTM---TGITE 125 (758)
Q Consensus 106 IfAYGqTGSGKTyTM---~Gii~ 125 (758)
+--.|++|||||+.+ .|+++
T Consensus 40 ~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 345799999999987 56553
No 372
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=20.07 E-value=29 Score=34.39 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=13.1
Q ss_pred eEEeeccCCCCccccc
Q 004378 105 SIFAYGQTSSGKTYTM 120 (758)
Q Consensus 105 tIfAYGqTGSGKTyTM 120 (758)
.+.-.|++|||||..+
T Consensus 18 ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLI 33 (219)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999875
Done!