Query 004379
Match_columns 758
No_of_seqs 219 out of 1660
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 23:21:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 3.1E-89 1.1E-93 791.9 45.8 596 15-728 2-614 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 2.6E-78 9E-83 696.0 42.8 522 14-696 1-539 (551)
3 2vl7_A XPD; helicase, unknown 100.0 1E-71 3.6E-76 638.7 36.4 519 13-698 4-531 (540)
4 3pey_A ATP-dependent RNA helic 99.7 6.7E-16 2.3E-20 169.3 27.8 120 508-687 234-355 (395)
5 1xti_A Probable ATP-dependent 99.7 7E-16 2.4E-20 169.1 27.7 107 515-687 249-356 (391)
6 3sqw_A ATP-dependent RNA helic 99.7 1.7E-15 5.8E-20 175.2 28.0 79 12-116 38-117 (579)
7 2db3_A ATP-dependent RNA helic 99.7 5.7E-15 2E-19 164.5 30.8 114 508-687 292-406 (434)
8 1s2m_A Putative ATP-dependent 99.7 2.4E-15 8.3E-20 165.5 26.1 73 13-117 39-112 (400)
9 1hv8_A Putative ATP-dependent 99.7 2.1E-15 7.3E-20 163.5 23.5 114 508-687 230-344 (367)
10 3i5x_A ATP-dependent RNA helic 99.7 6.7E-15 2.3E-19 169.7 26.8 79 12-116 89-168 (563)
11 2j0s_A ATP-dependent RNA helic 99.7 1.1E-14 3.7E-19 160.9 27.4 73 13-117 55-128 (410)
12 2i4i_A ATP-dependent RNA helic 99.7 7.9E-15 2.7E-19 162.2 26.0 106 516-687 276-382 (417)
13 3fht_A ATP-dependent RNA helic 99.7 6.4E-15 2.2E-19 162.6 24.3 114 515-688 265-379 (412)
14 2v1x_A ATP-dependent DNA helic 99.6 1.3E-14 4.6E-19 166.9 24.2 140 437-617 202-346 (591)
15 3oiy_A Reverse gyrase helicase 99.6 9.5E-14 3.2E-18 153.6 28.9 71 12-117 17-87 (414)
16 3eiq_A Eukaryotic initiation f 99.6 9.9E-15 3.4E-19 161.2 20.5 72 13-116 58-130 (414)
17 1oyw_A RECQ helicase, ATP-depe 99.6 2.4E-14 8.3E-19 162.8 24.0 164 437-687 176-342 (523)
18 2z0m_A 337AA long hypothetical 99.6 2.4E-14 8.3E-19 153.3 22.2 68 12-117 11-79 (337)
19 1fuu_A Yeast initiation factor 99.6 2.3E-15 7.8E-20 165.1 13.1 73 13-117 39-112 (394)
20 3fho_A ATP-dependent RNA helic 99.6 1.1E-14 3.6E-19 165.6 14.0 114 515-688 356-470 (508)
21 1wp9_A ATP-dependent RNA helic 99.5 6.6E-13 2.3E-17 149.1 25.3 92 502-616 346-447 (494)
22 2xgj_A ATP-dependent RNA helic 99.5 3E-12 1E-16 155.5 27.8 72 10-116 80-151 (1010)
23 2eyq_A TRCF, transcription-rep 99.5 6.4E-12 2.2E-16 154.8 28.2 76 10-116 597-674 (1151)
24 3l9o_A ATP-dependent RNA helic 99.5 3.1E-12 1.1E-16 156.6 25.2 74 8-116 176-249 (1108)
25 3fmp_B ATP-dependent RNA helic 99.4 1.7E-13 5.7E-18 154.7 11.2 113 516-688 333-446 (479)
26 2va8_A SSO2462, SKI2-type heli 99.4 4.5E-12 1.6E-16 150.2 23.3 70 13-115 26-96 (715)
27 4a4z_A Antiviral helicase SKI2 99.4 1.8E-12 6.2E-17 157.3 19.6 73 9-116 32-104 (997)
28 4gl2_A Interferon-induced heli 99.4 7.2E-12 2.4E-16 148.2 22.5 75 14-117 5-80 (699)
29 2oca_A DAR protein, ATP-depend 99.4 7.4E-12 2.5E-16 142.4 21.1 119 502-686 334-453 (510)
30 3h1t_A Type I site-specific re 99.4 2.4E-11 8.4E-16 140.6 25.2 129 502-688 423-558 (590)
31 2p6r_A Afuhel308 helicase; pro 99.4 1.8E-11 6E-16 144.7 21.4 69 13-116 21-90 (702)
32 2zj8_A DNA helicase, putative 99.3 5.8E-11 2E-15 140.7 23.5 71 13-116 19-90 (720)
33 4f92_B U5 small nuclear ribonu 99.3 1.4E-10 4.8E-15 147.2 26.8 70 15-116 924-994 (1724)
34 1gku_B Reverse gyrase, TOP-RG; 99.3 1.5E-10 5.1E-15 141.7 22.9 69 12-116 53-121 (1054)
35 3fe2_A Probable ATP-dependent 99.3 1.9E-11 6.7E-16 124.6 11.7 77 13-116 47-124 (242)
36 4ddu_A Reverse gyrase; topoiso 99.3 1.8E-10 6.1E-15 141.1 22.1 71 12-117 74-144 (1104)
37 2pl3_A Probable ATP-dependent 99.2 3.7E-11 1.3E-15 121.9 12.9 77 13-117 43-120 (236)
38 3iuy_A Probable ATP-dependent 99.2 3E-11 1E-15 122.0 11.5 79 13-117 38-117 (228)
39 4f92_B U5 small nuclear ribonu 99.2 4.5E-10 1.5E-14 142.6 24.6 81 13-116 74-156 (1724)
40 1vec_A ATP-dependent RNA helic 99.2 4.1E-11 1.4E-15 118.8 11.6 73 13-117 21-94 (206)
41 1qde_A EIF4A, translation init 99.2 2.9E-11 9.9E-16 121.6 10.0 73 13-117 32-105 (224)
42 2oxc_A Probable ATP-dependent 99.2 4.3E-11 1.5E-15 121.1 10.9 73 13-117 42-115 (230)
43 2gxq_A Heat resistant RNA depe 99.2 5.3E-11 1.8E-15 118.0 11.3 76 13-117 19-95 (207)
44 3ber_A Probable ATP-dependent 99.2 6.3E-11 2.1E-15 121.4 11.6 73 12-116 60-133 (249)
45 3dkp_A Probable ATP-dependent 99.2 5E-11 1.7E-15 121.7 10.5 74 13-117 47-121 (245)
46 1wrb_A DJVLGB; RNA helicase, D 99.2 1.1E-10 3.7E-15 119.9 12.9 82 13-117 41-123 (253)
47 1t6n_A Probable ATP-dependent 99.2 7.7E-11 2.6E-15 118.2 10.2 73 13-117 32-105 (220)
48 1q0u_A Bstdead; DEAD protein, 99.1 7.7E-11 2.6E-15 118.2 8.7 73 13-117 22-95 (219)
49 3bor_A Human initiation factor 99.1 7.8E-11 2.7E-15 119.7 8.7 73 13-117 48-121 (237)
50 3ly5_A ATP-dependent RNA helic 99.1 4.2E-10 1.4E-14 116.2 13.7 77 13-117 72-149 (262)
51 2jlq_A Serine protease subunit 99.1 7.6E-10 2.6E-14 123.5 16.2 122 515-686 187-308 (451)
52 3b6e_A Interferon-induced heli 99.1 1.3E-10 4.6E-15 115.7 8.4 75 12-115 29-104 (216)
53 2v6i_A RNA helicase; membrane, 99.0 1.1E-08 3.9E-13 113.2 21.4 119 515-686 170-288 (431)
54 3tbk_A RIG-I helicase domain; 99.0 9.7E-10 3.3E-14 125.8 12.6 73 14-116 2-74 (555)
55 3fmo_B ATP-dependent RNA helic 99.0 7.2E-10 2.5E-14 116.7 9.4 73 13-117 110-185 (300)
56 4a2p_A RIG-I, retinoic acid in 99.0 1.1E-09 3.8E-14 125.4 10.5 74 13-116 4-77 (556)
57 2fz4_A DNA repair protein RAD2 98.9 3.1E-09 1.1E-13 107.8 10.4 69 10-116 87-155 (237)
58 1gm5_A RECG; helicase, replica 98.9 7.5E-09 2.6E-13 121.9 13.0 74 12-116 364-439 (780)
59 1rif_A DAR protein, DNA helica 98.9 4.5E-09 1.5E-13 109.6 9.8 69 15-117 112-180 (282)
60 2fwr_A DNA repair protein RAD2 98.9 3.9E-09 1.3E-13 118.6 9.6 69 10-116 87-155 (472)
61 2xau_A PRE-mRNA-splicing facto 98.9 3.1E-08 1.1E-12 117.2 17.7 147 499-685 285-439 (773)
62 2ykg_A Probable ATP-dependent 98.8 1.1E-08 3.9E-13 120.5 13.6 76 12-117 8-84 (696)
63 1tf5_A Preprotein translocase 98.8 2E-06 6.8E-11 100.0 29.9 67 13-116 80-146 (844)
64 4a2q_A RIG-I, retinoic acid in 98.8 1.1E-08 3.8E-13 122.4 11.3 73 14-116 246-318 (797)
65 4a2w_A RIG-I, retinoic acid in 98.7 1.4E-08 4.7E-13 123.2 8.5 73 14-116 246-318 (936)
66 1nkt_A Preprotein translocase 98.7 4.5E-06 1.6E-10 97.0 28.1 133 434-605 394-527 (922)
67 1z63_A Helicase of the SNF2/RA 98.5 3.5E-07 1.2E-11 103.3 12.2 95 502-617 328-423 (500)
68 3jux_A Protein translocase sub 98.5 8.6E-05 2.9E-09 84.6 30.5 152 426-617 401-559 (822)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 1.3E-06 4.6E-11 105.6 10.6 73 15-116 270-352 (1038)
70 3dmq_A RNA polymerase-associat 98.3 2.2E-06 7.7E-11 104.1 12.6 84 514-617 501-585 (968)
71 3mwy_W Chromo domain-containin 98.2 7.3E-06 2.5E-10 97.8 13.0 80 16-124 236-315 (800)
72 2fsf_A Preprotein translocase 98.1 5.1E-06 1.8E-10 96.3 8.3 66 14-116 72-137 (853)
73 2hjv_A ATP-dependent RNA helic 97.9 6.7E-05 2.3E-09 70.9 11.6 80 515-617 34-114 (163)
74 2ipc_A Preprotein translocase 97.9 1.7E-05 5.7E-10 92.0 8.6 94 426-537 370-464 (997)
75 1z3i_X Similar to RAD54-like; 97.9 2.4E-05 8.3E-10 90.9 9.6 77 15-116 54-135 (644)
76 2p6n_A ATP-dependent RNA helic 97.9 3.8E-05 1.3E-09 74.7 9.1 87 508-617 46-133 (191)
77 2jgn_A DBX, DDX3, ATP-dependen 97.8 0.00013 4.6E-09 70.4 12.2 79 516-617 46-125 (185)
78 1fuk_A Eukaryotic initiation f 97.8 5.7E-05 2E-09 71.5 8.8 80 515-617 29-109 (165)
79 4b3f_X DNA-binding protein smu 97.8 0.00011 3.7E-09 85.5 12.8 77 18-130 191-267 (646)
80 2rb4_A ATP-dependent RNA helic 97.8 0.00014 4.7E-09 69.5 11.4 88 508-618 25-114 (175)
81 1t5i_A C_terminal domain of A 97.6 0.00013 4.5E-09 69.5 8.5 79 516-617 31-110 (172)
82 2z83_A Helicase/nucleoside tri 97.6 2.5E-05 8.6E-10 87.0 3.6 57 29-115 15-71 (459)
83 3eaq_A Heat resistant RNA depe 97.5 0.00035 1.2E-08 69.1 10.8 80 515-617 30-110 (212)
84 1yks_A Genome polyprotein [con 97.5 3.6E-05 1.2E-09 85.2 3.8 75 515-616 176-250 (440)
85 2wv9_A Flavivirin protease NS2 97.4 2.1E-05 7.1E-10 91.4 -0.8 119 515-685 409-529 (673)
86 2yjt_D ATP-dependent RNA helic 96.4 3.1E-05 1E-09 73.8 0.0 79 516-617 30-109 (170)
87 3llm_A ATP-dependent RNA helic 97.2 0.00048 1.6E-08 69.2 7.3 72 14-115 59-130 (235)
88 2whx_A Serine protease/ntpase/ 97.2 0.00017 5.7E-09 83.1 4.3 120 515-686 354-475 (618)
89 2gk6_A Regulator of nonsense t 97.2 0.0022 7.4E-08 74.1 13.6 68 18-119 182-249 (624)
90 3i32_A Heat resistant RNA depe 97.1 0.002 6.9E-08 67.0 11.3 80 515-617 27-107 (300)
91 2xzl_A ATP-dependent helicase 97.0 0.0026 9E-08 75.2 11.9 68 18-119 362-429 (802)
92 2wjy_A Regulator of nonsense t 96.9 0.0046 1.6E-07 73.1 12.8 68 18-119 358-425 (800)
93 2fwr_A DNA repair protein RAD2 96.7 0.0016 5.5E-08 72.5 6.4 76 515-617 348-423 (472)
94 3rc3_A ATP-dependent RNA helic 96.5 0.0018 6.2E-08 75.0 5.4 121 516-687 320-443 (677)
95 4a2p_A RIG-I, retinoic acid in 96.3 0.013 4.5E-07 66.3 11.0 105 501-617 374-482 (556)
96 2d7d_A Uvrabc system protein B 96.3 0.013 4.3E-07 68.0 10.9 91 503-617 433-524 (661)
97 2z83_A Helicase/nucleoside tri 96.1 0.0077 2.6E-07 66.8 7.6 123 515-687 189-312 (459)
98 2whx_A Serine protease/ntpase/ 96.1 0.011 3.7E-07 68.0 8.7 57 29-115 180-236 (618)
99 3tbk_A RIG-I helicase domain; 96.0 0.015 5E-07 65.7 9.5 106 501-617 373-481 (555)
100 1z5z_A Helicase of the SNF2/RA 96.0 0.04 1.4E-06 56.3 11.7 96 502-618 99-195 (271)
101 3o8b_A HCV NS3 protease/helica 96.0 0.0032 1.1E-07 72.2 3.7 72 515-616 395-466 (666)
102 1c4o_A DNA nucleotide excision 96.0 0.016 5.5E-07 67.2 9.5 91 502-616 426-517 (664)
103 1gm5_A RECG; helicase, replica 95.8 0.011 3.9E-07 69.5 7.3 92 503-616 566-667 (780)
104 4a2w_A RIG-I, retinoic acid in 95.8 0.021 7.1E-07 69.1 9.7 106 502-617 616-723 (936)
105 4a2q_A RIG-I, retinoic acid in 95.7 0.035 1.2E-06 66.0 11.2 107 501-617 615-723 (797)
106 1yks_A Genome polyprotein [con 95.6 0.037 1.3E-06 60.9 10.2 56 31-116 4-59 (440)
107 3upu_A ATP-dependent DNA helic 95.6 0.032 1.1E-06 61.7 9.6 63 18-110 27-90 (459)
108 2wv9_A Flavivirin protease NS2 95.5 0.025 8.6E-07 65.5 8.9 71 17-117 216-293 (673)
109 1z63_A Helicase of the SNF2/RA 95.5 0.049 1.7E-06 60.8 11.0 73 14-116 35-107 (500)
110 3rc3_A ATP-dependent RNA helic 95.4 0.021 7.1E-07 66.1 7.5 50 34-118 154-203 (677)
111 2ykg_A Probable ATP-dependent 95.2 0.05 1.7E-06 63.5 10.0 99 501-617 382-490 (696)
112 1w36_D RECD, exodeoxyribonucle 95.1 0.024 8.2E-07 65.0 6.8 64 19-115 152-217 (608)
113 3dmq_A RNA polymerase-associat 94.9 0.051 1.8E-06 65.8 9.1 72 13-116 150-221 (968)
114 1z3i_X Similar to RAD54-like; 94.5 0.15 5.1E-06 58.9 11.6 81 515-617 415-498 (644)
115 3mwy_W Chromo domain-containin 94.5 0.069 2.4E-06 63.4 8.9 92 503-617 560-654 (800)
116 1c4o_A DNA nucleotide excision 92.7 0.2 6.8E-06 58.0 8.3 70 14-117 6-76 (664)
117 2w00_A HSDR, R.ECOR124I; ATP-b 92.6 0.72 2.5E-05 55.8 13.1 42 497-538 509-559 (1038)
118 3n70_A Transport activator; si 91.7 0.13 4.5E-06 46.8 4.2 34 23-58 12-45 (145)
119 3co5_A Putative two-component 91.7 0.13 4.4E-06 46.7 4.1 27 24-50 16-42 (143)
120 3lfu_A DNA helicase II; SF1 he 91.4 0.21 7.2E-06 57.6 6.6 66 18-116 11-76 (647)
121 2r44_A Uncharacterized protein 91.4 0.1 3.5E-06 54.7 3.6 40 17-58 28-67 (331)
122 2w58_A DNAI, primosome compone 91.1 0.22 7.6E-06 47.8 5.4 38 19-58 32-75 (202)
123 2d7d_A Uvrabc system protein B 90.6 0.48 1.7E-05 54.7 8.5 75 9-117 5-80 (661)
124 3e1s_A Exodeoxyribonuclease V, 90.4 0.5 1.7E-05 53.5 8.2 34 14-51 187-220 (574)
125 2o0j_A Terminase, DNA packagin 90.2 0.63 2.1E-05 49.8 8.3 70 13-115 160-229 (385)
126 3cpe_A Terminase, DNA packagin 90.0 0.63 2.1E-05 53.0 8.7 70 13-115 160-229 (592)
127 3nbx_X ATPase RAVA; AAA+ ATPas 89.9 0.15 5.2E-06 56.6 3.3 38 19-58 25-62 (500)
128 2fsf_A Preprotein translocase 89.8 5.6 0.00019 46.4 16.2 132 434-604 375-507 (853)
129 3o8b_A HCV NS3 protease/helica 89.7 0.78 2.7E-05 52.6 9.1 54 27-114 224-277 (666)
130 3ec2_A DNA replication protein 89.0 0.51 1.7E-05 44.4 5.9 42 15-58 12-59 (180)
131 2qgz_A Helicase loader, putati 88.7 0.67 2.3E-05 48.0 7.1 38 20-59 132-174 (308)
132 3hws_A ATP-dependent CLP prote 88.5 0.3 1E-05 51.9 4.3 37 20-58 19-72 (363)
133 1uaa_A REP helicase, protein ( 88.5 0.51 1.7E-05 54.7 6.6 65 18-116 4-69 (673)
134 1jbk_A CLPB protein; beta barr 88.4 0.3 1E-05 45.8 3.8 38 15-52 21-60 (195)
135 2p65_A Hypothetical protein PF 88.4 0.33 1.1E-05 45.4 4.1 38 15-52 21-60 (187)
136 1ofh_A ATP-dependent HSL prote 87.8 0.35 1.2E-05 49.7 4.2 38 19-58 18-71 (310)
137 1a5t_A Delta prime, HOLB; zinc 87.1 0.57 1.9E-05 49.2 5.4 37 17-53 3-42 (334)
138 3h4m_A Proteasome-activating n 86.6 0.33 1.1E-05 49.4 3.1 23 34-58 50-72 (285)
139 1pjr_A PCRA; DNA repair, DNA r 85.8 0.93 3.2E-05 53.0 6.7 66 17-115 12-77 (724)
140 2bjv_A PSP operon transcriptio 85.7 0.63 2.2E-05 46.8 4.6 34 23-58 17-50 (265)
141 4fcw_A Chaperone protein CLPB; 85.6 0.4 1.4E-05 49.4 3.2 38 19-58 20-68 (311)
142 1njg_A DNA polymerase III subu 85.5 0.38 1.3E-05 47.0 2.8 33 19-51 26-61 (250)
143 1iqp_A RFCS; clamp loader, ext 85.3 0.5 1.7E-05 48.9 3.7 35 18-52 27-63 (327)
144 3te6_A Regulatory protein SIR3 85.0 0.57 1.9E-05 48.7 3.9 36 18-53 25-63 (318)
145 2chg_A Replication factor C sm 84.9 0.56 1.9E-05 45.1 3.7 33 19-51 20-54 (226)
146 1g8p_A Magnesium-chelatase 38 84.3 0.45 1.5E-05 49.9 2.9 43 14-58 22-66 (350)
147 3b9p_A CG5977-PA, isoform A; A 83.1 0.7 2.4E-05 47.3 3.6 37 20-58 25-75 (297)
148 3bos_A Putative DNA replicatio 83.1 0.95 3.2E-05 44.2 4.5 31 21-51 36-68 (242)
149 1ojl_A Transcriptional regulat 82.0 0.86 2.9E-05 47.1 3.8 32 24-57 14-45 (304)
150 1sxj_D Activator 1 41 kDa subu 82.0 0.55 1.9E-05 49.3 2.4 34 19-52 40-75 (353)
151 1sxj_C Activator 1 40 kDa subu 81.8 0.99 3.4E-05 47.3 4.3 34 20-53 29-64 (340)
152 2c9o_A RUVB-like 1; hexameric 81.7 1.4 4.8E-05 48.3 5.7 36 21-58 45-84 (456)
153 3cf0_A Transitional endoplasmi 81.5 0.94 3.2E-05 46.6 3.9 22 35-58 49-70 (301)
154 3pfi_A Holliday junction ATP-d 81.4 0.72 2.5E-05 48.2 3.1 33 19-51 32-71 (338)
155 1lv7_A FTSH; alpha/beta domain 80.5 1.6 5.5E-05 43.5 5.2 22 35-58 45-66 (257)
156 3d8b_A Fidgetin-like protein 1 80.4 1 3.4E-05 47.7 3.7 37 20-58 88-138 (357)
157 2qz4_A Paraplegin; AAA+, SPG7, 80.0 1.8 6.2E-05 43.0 5.4 39 18-58 11-60 (262)
158 3pxg_A Negative regulator of g 79.2 1.2 4.2E-05 49.0 4.1 42 16-59 180-223 (468)
159 1hqc_A RUVB; extended AAA-ATPa 78.8 1.3 4.3E-05 45.8 3.9 33 19-51 15-54 (324)
160 3eie_A Vacuolar protein sortin 78.7 1 3.5E-05 46.8 3.1 41 16-58 18-72 (322)
161 1um8_A ATP-dependent CLP prote 78.6 1.4 4.9E-05 46.7 4.3 22 35-58 72-93 (376)
162 3pvs_A Replication-associated 78.4 1 3.5E-05 49.3 3.1 34 18-51 28-66 (447)
163 3pxi_A Negative regulator of g 78.4 1.2 4.1E-05 52.4 3.9 39 20-60 495-544 (758)
164 3vfd_A Spastin; ATPase, microt 78.1 1.1 3.7E-05 48.1 3.2 40 17-58 116-169 (389)
165 3uk6_A RUVB-like 2; hexameric 77.9 2.3 7.9E-05 44.8 5.7 34 19-52 50-87 (368)
166 3t15_A Ribulose bisphosphate c 77.9 1.8 6E-05 44.4 4.6 21 36-58 37-57 (293)
167 1jr3_A DNA polymerase III subu 77.6 1.6 5.6E-05 45.9 4.4 35 18-52 18-55 (373)
168 3syl_A Protein CBBX; photosynt 77.5 1.3 4.3E-05 45.6 3.3 17 36-52 68-84 (309)
169 2qen_A Walker-type ATPase; unk 77.3 1.2 4.1E-05 46.4 3.1 27 24-50 20-46 (350)
170 1g41_A Heat shock protein HSLU 77.1 1.4 4.9E-05 47.9 3.7 37 20-58 19-71 (444)
171 2chq_A Replication factor C sm 77.1 1.1 3.9E-05 46.0 2.9 33 20-52 21-55 (319)
172 3k1j_A LON protease, ATP-depen 77.1 1.6 5.4E-05 49.8 4.3 37 20-58 45-81 (604)
173 1xwi_A SKD1 protein; VPS4B, AA 77.1 1.6 5.3E-05 45.5 3.9 21 36-58 46-66 (322)
174 2qp9_X Vacuolar protein sortin 77.0 1.3 4.3E-05 46.9 3.2 38 19-58 54-105 (355)
175 2r62_A Cell division protease 76.5 0.91 3.1E-05 45.6 1.9 22 35-58 44-65 (268)
176 2zts_A Putative uncharacterize 76.2 3.7 0.00013 40.2 6.3 26 32-57 27-52 (251)
177 2gza_A Type IV secretion syste 76.0 2.3 7.8E-05 45.0 4.9 32 25-58 165-196 (361)
178 1in4_A RUVB, holliday junction 75.8 1.7 5.6E-05 45.5 3.7 37 20-58 29-72 (334)
179 4b4t_M 26S protease regulatory 75.7 1.3 4.5E-05 48.0 2.9 22 36-59 216-237 (434)
180 4b4t_J 26S protease regulatory 75.0 1.5 5.1E-05 47.0 3.1 22 36-59 183-204 (405)
181 2v1u_A Cell division control p 74.6 1.5 5.3E-05 46.2 3.2 34 19-52 22-61 (387)
182 1fnn_A CDC6P, cell division co 74.6 1.6 5.5E-05 46.2 3.3 33 20-52 21-61 (389)
183 3pxi_A Negative regulator of g 74.0 2 6.7E-05 50.5 4.1 43 16-60 180-224 (758)
184 1d2n_A N-ethylmaleimide-sensit 73.5 3.3 0.00011 41.6 5.2 21 36-58 65-85 (272)
185 4b4t_K 26S protease regulatory 73.5 1.6 5.5E-05 47.3 2.9 22 36-59 207-228 (428)
186 2gno_A DNA polymerase III, gam 73.4 2.2 7.5E-05 44.0 3.9 34 20-53 1-36 (305)
187 4b4t_L 26S protease subunit RP 73.3 1.6 5.6E-05 47.3 2.9 22 36-59 216-237 (437)
188 1l8q_A Chromosomal replication 73.2 3.2 0.00011 42.9 5.1 37 20-58 18-58 (324)
189 1r6b_X CLPA protein; AAA+, N-t 73.1 1.7 5.8E-05 51.0 3.3 37 20-58 462-509 (758)
190 2zan_A Vacuolar protein sortin 72.8 2.2 7.6E-05 46.5 3.9 38 19-58 137-188 (444)
191 2qby_B CDC6 homolog 3, cell di 72.7 1.9 6.5E-05 45.6 3.3 18 35-52 45-62 (384)
192 2b8t_A Thymidine kinase; deoxy 72.3 3.6 0.00012 40.3 4.9 33 29-61 6-38 (223)
193 1ry6_A Internal kinesin; kines 72.0 3.1 0.00011 43.8 4.6 44 10-53 51-103 (360)
194 2dr3_A UPF0273 protein PH0284; 71.0 6.5 0.00022 38.4 6.6 26 32-57 20-45 (247)
195 4b4t_H 26S protease regulatory 70.9 1.9 6.4E-05 47.0 2.7 21 36-58 244-264 (467)
196 4b4t_I 26S protease regulatory 70.6 2.1 7.1E-05 46.2 2.9 39 18-58 187-237 (437)
197 3u61_B DNA polymerase accessor 70.5 2.9 0.0001 43.2 4.0 36 18-53 28-66 (324)
198 1ixz_A ATP-dependent metallopr 70.0 5.3 0.00018 39.5 5.7 39 18-58 21-70 (254)
199 1qvr_A CLPB protein; coiled co 69.8 2.2 7.7E-05 50.8 3.3 39 20-60 562-611 (854)
200 1sxj_A Activator 1 95 kDa subu 69.8 3 0.0001 46.5 4.2 33 20-52 43-94 (516)
201 1sxj_B Activator 1 37 kDa subu 69.7 2.9 0.0001 42.8 3.8 33 20-52 25-59 (323)
202 3hu3_A Transitional endoplasmi 69.0 2.5 8.5E-05 46.8 3.2 21 36-58 239-259 (489)
203 1u0j_A DNA replication protein 68.9 4.4 0.00015 40.7 4.7 20 37-58 106-125 (267)
204 2pt7_A CAG-ALFA; ATPase, prote 67.7 2.9 9.8E-05 43.7 3.2 32 24-57 160-191 (330)
205 3u4q_A ATP-dependent helicase/ 67.6 6.2 0.00021 48.9 6.7 65 17-112 11-75 (1232)
206 3f9v_A Minichromosome maintena 67.4 1.7 5.8E-05 49.4 1.5 31 20-50 299-342 (595)
207 2oap_1 GSPE-2, type II secreti 67.0 4.3 0.00015 45.1 4.6 28 23-50 248-275 (511)
208 2ce7_A Cell division protein F 66.2 3.4 0.00011 45.4 3.5 39 18-58 21-70 (476)
209 1iy2_A ATP-dependent metallopr 65.8 7 0.00024 39.3 5.7 39 18-58 45-94 (278)
210 1tue_A Replication protein E1; 65.0 5.6 0.00019 38.3 4.4 18 36-53 59-76 (212)
211 3dc4_A Kinesin-like protein NO 63.1 7.2 0.00025 40.7 5.2 49 4-52 56-112 (344)
212 2qby_A CDC6 homolog 1, cell di 62.6 3.6 0.00012 43.2 2.9 34 19-52 23-62 (386)
213 2v9p_A Replication protein E1; 61.5 2.8 9.5E-05 43.2 1.6 34 23-58 114-147 (305)
214 3llm_A ATP-dependent RNA helic 60.9 3.1 0.00011 40.9 1.8 34 208-245 154-187 (235)
215 1r6b_X CLPA protein; AAA+, N-t 60.6 5.7 0.00019 46.5 4.3 40 17-58 187-228 (758)
216 2y65_A Kinesin, kinesin heavy 60.5 6.6 0.00022 41.4 4.3 50 4-53 46-103 (365)
217 1qvr_A CLPB protein; coiled co 59.9 5.8 0.0002 47.2 4.3 42 15-58 169-212 (854)
218 1sxj_E Activator 1 40 kDa subu 59.8 3.4 0.00012 43.2 2.0 33 20-52 18-53 (354)
219 2dhr_A FTSH; AAA+ protein, hex 59.8 9.6 0.00033 42.1 5.7 39 18-58 36-85 (499)
220 1p9r_A General secretion pathw 59.1 6.8 0.00023 42.2 4.3 30 19-50 153-182 (418)
221 1bg2_A Kinesin; motor protein, 58.3 7.4 0.00025 40.3 4.2 49 5-53 40-96 (325)
222 3vkg_A Dynein heavy chain, cyt 58.3 6.2 0.00021 53.1 4.4 34 17-50 1286-1319(3245)
223 2z4s_A Chromosomal replication 57.9 9.5 0.00032 41.4 5.2 21 36-58 131-151 (440)
224 2kjq_A DNAA-related protein; s 57.9 5.2 0.00018 36.2 2.7 23 34-58 35-57 (149)
225 2bwj_A Adenylate kinase 5; pho 57.5 5.8 0.0002 37.3 3.1 30 26-57 3-32 (199)
226 4akg_A Glutathione S-transfera 57.0 7.8 0.00027 51.5 5.0 35 17-51 1249-1283(2695)
227 1e9r_A Conjugal transfer prote 56.8 5.8 0.0002 42.9 3.3 19 34-52 52-70 (437)
228 2q6t_A DNAB replication FORK h 56.7 8.1 0.00028 42.0 4.5 35 27-61 192-226 (444)
229 2w0m_A SSO2452; RECA, SSPF, un 56.4 20 0.00069 34.2 7.0 23 31-53 19-41 (235)
230 2cvh_A DNA repair and recombin 56.1 15 0.00051 34.9 5.9 23 31-53 16-38 (220)
231 3b85_A Phosphate starvation-in 55.3 13 0.00045 35.7 5.2 38 15-58 5-43 (208)
232 4akg_A Glutathione S-transfera 55.1 9.8 0.00034 50.6 5.5 40 14-53 902-941 (2695)
233 2r6a_A DNAB helicase, replicat 53.7 11 0.00038 41.0 4.9 35 27-61 195-229 (454)
234 3exa_A TRNA delta(2)-isopenten 53.3 6.5 0.00022 40.5 2.7 21 35-57 3-23 (322)
235 2x8a_A Nuclear valosin-contain 53.0 6.9 0.00024 39.4 2.9 21 36-58 45-65 (274)
236 3bgw_A DNAB-like replicative h 52.7 10 0.00035 41.2 4.4 32 30-61 192-223 (444)
237 1f9v_A Kinesin-like protein KA 52.4 10 0.00035 39.7 4.1 39 15-53 60-103 (347)
238 3a8t_A Adenylate isopentenyltr 52.1 6.8 0.00023 40.8 2.7 21 36-58 41-61 (339)
239 2eyu_A Twitching motility prot 51.5 7.2 0.00025 39.0 2.7 25 24-50 16-40 (261)
240 1kgd_A CASK, peripheral plasma 51.4 5.8 0.0002 37.0 1.9 23 34-58 4-26 (180)
241 2qor_A Guanylate kinase; phosp 51.2 5.2 0.00018 38.2 1.5 26 30-57 7-32 (204)
242 3ney_A 55 kDa erythrocyte memb 51.1 8.7 0.0003 36.7 3.1 23 34-58 18-40 (197)
243 2r2a_A Uncharacterized protein 51.0 4.9 0.00017 38.5 1.3 16 37-52 7-22 (199)
244 3bh0_A DNAB-like replicative h 50.8 10 0.00036 38.9 3.9 32 29-60 62-93 (315)
245 4a14_A Kinesin, kinesin-like p 50.7 12 0.0004 39.2 4.2 39 15-53 58-102 (344)
246 1w5s_A Origin recognition comp 50.5 10 0.00034 40.3 3.9 35 18-52 27-69 (412)
247 2rep_A Kinesin-like protein KI 50.4 12 0.00041 39.6 4.3 39 15-53 91-134 (376)
248 2j41_A Guanylate kinase; GMP, 50.0 8.6 0.00029 36.3 2.9 24 32-57 3-26 (207)
249 3vaa_A Shikimate kinase, SK; s 49.9 9.1 0.00031 36.2 3.1 25 32-58 22-46 (199)
250 3tau_A Guanylate kinase, GMP k 49.9 9.1 0.00031 36.6 3.1 22 34-57 7-28 (208)
251 1svm_A Large T antigen; AAA+ f 49.7 10 0.00035 40.2 3.7 27 30-58 164-190 (377)
252 1kht_A Adenylate kinase; phosp 49.7 9.2 0.00031 35.5 3.0 22 35-58 3-24 (192)
253 3foz_A TRNA delta(2)-isopenten 49.4 8 0.00027 39.7 2.7 21 36-58 11-31 (316)
254 1goj_A Kinesin, kinesin heavy 49.3 12 0.00042 39.2 4.1 39 15-53 55-99 (355)
255 3tr0_A Guanylate kinase, GMP k 49.1 9 0.00031 36.1 2.9 23 33-57 5-27 (205)
256 1x88_A Kinesin-like protein KI 48.8 10 0.00035 39.9 3.5 39 15-53 63-107 (359)
257 3lw7_A Adenylate kinase relate 48.8 6.4 0.00022 35.8 1.8 20 36-57 2-21 (179)
258 2fna_A Conserved hypothetical 48.5 6.1 0.00021 40.9 1.7 30 17-51 17-46 (357)
259 3bfn_A Kinesin-like protein KI 48.5 10 0.00035 40.3 3.4 39 15-53 73-117 (388)
260 1xx6_A Thymidine kinase; NESG, 48.3 13 0.00044 35.2 3.8 27 34-60 7-33 (191)
261 4etp_A Kinesin-like protein KA 48.0 12 0.00041 40.0 3.9 39 15-53 116-159 (403)
262 2vvg_A Kinesin-2; motor protei 47.8 14 0.00047 38.7 4.2 39 15-53 64-108 (350)
263 1ypw_A Transitional endoplasmi 47.6 8.3 0.00028 45.4 2.8 23 34-58 237-259 (806)
264 3nwj_A ATSK2; P loop, shikimat 47.4 12 0.0004 37.2 3.5 36 21-58 31-69 (250)
265 1f2t_A RAD50 ABC-ATPase; DNA d 47.1 11 0.00038 33.9 3.1 25 36-62 24-48 (149)
266 3iij_A Coilin-interacting nucl 46.9 12 0.0004 34.6 3.3 23 34-58 10-32 (180)
267 2wbe_C Bipolar kinesin KRP-130 46.9 11 0.00037 39.9 3.3 39 15-53 75-119 (373)
268 2h58_A Kinesin-like protein KI 46.8 11 0.00037 39.2 3.2 39 15-53 56-99 (330)
269 3trf_A Shikimate kinase, SK; a 46.8 11 0.00037 34.9 3.0 22 35-58 5-26 (185)
270 1t5c_A CENP-E protein, centrom 46.7 14 0.00048 38.7 4.1 39 15-53 52-96 (349)
271 3t0q_A AGR253WP; kinesin, alph 46.6 14 0.00047 38.7 4.0 39 15-53 61-104 (349)
272 2qmh_A HPR kinase/phosphorylas 46.2 8.6 0.00029 36.8 2.1 16 35-50 34-49 (205)
273 3b6u_A Kinesin-like protein KI 46.1 10 0.00035 40.0 2.9 39 15-53 76-120 (372)
274 1n0w_A DNA repair protein RAD5 46.1 18 0.0006 35.0 4.6 23 32-54 21-43 (243)
275 4a1f_A DNAB helicase, replicat 45.9 14 0.00049 38.4 4.0 35 27-61 38-72 (338)
276 3cf2_A TER ATPase, transitiona 45.9 9.6 0.00033 44.6 2.9 21 36-58 239-259 (806)
277 2c95_A Adenylate kinase 1; tra 45.5 15 0.0005 34.3 3.7 25 32-58 6-30 (196)
278 1q57_A DNA primase/helicase; d 45.3 9.5 0.00033 42.1 2.7 28 31-58 238-265 (503)
279 1cr0_A DNA primase/helicase; R 44.9 14 0.00048 37.4 3.8 33 25-57 25-57 (296)
280 2z43_A DNA repair and recombin 44.9 17 0.00057 37.5 4.4 23 33-55 105-127 (324)
281 2v54_A DTMP kinase, thymidylat 44.7 12 0.00042 35.2 3.1 23 34-58 3-25 (204)
282 3kb2_A SPBC2 prophage-derived 44.3 12 0.00042 33.9 2.9 20 37-58 3-22 (173)
283 3lre_A Kinesin-like protein KI 44.3 12 0.00039 39.4 3.0 44 10-53 73-124 (355)
284 2orw_A Thymidine kinase; TMTK, 44.0 22 0.00075 33.2 4.7 25 35-59 3-27 (184)
285 3cf2_A TER ATPase, transitiona 43.5 11 0.00038 44.1 2.9 21 36-58 512-532 (806)
286 1zak_A Adenylate kinase; ATP:A 43.2 13 0.00043 35.8 2.9 23 34-58 4-26 (222)
287 3jvv_A Twitching mobility prot 43.2 12 0.0004 39.4 2.9 19 32-50 120-138 (356)
288 1zd8_A GTP:AMP phosphotransfer 43.1 8.5 0.00029 37.3 1.7 24 33-58 5-28 (227)
289 3tlx_A Adenylate kinase 2; str 42.8 13 0.00044 36.6 3.0 23 34-58 28-50 (243)
290 3m6a_A ATP-dependent protease 42.3 13 0.00043 41.7 3.1 22 35-58 108-129 (543)
291 1v8k_A Kinesin-like protein KI 42.1 20 0.00068 38.3 4.4 43 11-53 123-173 (410)
292 2heh_A KIF2C protein; kinesin, 42.1 19 0.00065 38.2 4.2 44 10-53 102-153 (387)
293 2plr_A DTMP kinase, probable t 41.8 13 0.00043 35.2 2.7 22 35-58 4-25 (213)
294 1u94_A RECA protein, recombina 41.6 22 0.00076 37.2 4.7 28 32-59 60-87 (356)
295 1ex7_A Guanylate kinase; subst 41.4 10 0.00036 35.7 1.9 20 36-57 2-21 (186)
296 1nks_A Adenylate kinase; therm 41.3 12 0.00041 34.7 2.4 20 37-58 3-22 (194)
297 3kta_A Chromosome segregation 40.9 17 0.00057 33.6 3.3 24 36-61 27-50 (182)
298 1ny5_A Transcriptional regulat 40.8 19 0.00066 38.1 4.2 25 27-51 152-176 (387)
299 3cm0_A Adenylate kinase; ATP-b 40.7 8.6 0.0003 35.7 1.2 22 34-57 3-24 (186)
300 3cob_A Kinesin heavy chain-lik 40.6 17 0.00057 38.4 3.5 39 15-53 55-98 (369)
301 2ewv_A Twitching motility prot 40.6 12 0.00041 39.6 2.4 19 32-50 133-151 (372)
302 2jaq_A Deoxyguanosine kinase; 40.4 15 0.00051 34.4 2.9 20 37-58 2-21 (205)
303 1gvn_B Zeta; postsegregational 40.1 22 0.00074 36.0 4.3 21 36-58 34-54 (287)
304 3eph_A TRNA isopentenyltransfe 39.9 13 0.00043 39.7 2.5 21 36-58 3-23 (409)
305 2vhj_A Ntpase P4, P4; non- hyd 39.9 13 0.00043 38.5 2.4 27 32-60 120-146 (331)
306 3c8u_A Fructokinase; YP_612366 39.8 9.3 0.00032 36.4 1.3 28 23-50 6-37 (208)
307 1z6g_A Guanylate kinase; struc 39.6 17 0.00059 34.9 3.3 29 27-57 15-43 (218)
308 2r2a_A Uncharacterized protein 38.9 18 0.0006 34.5 3.1 14 234-247 87-100 (199)
309 1lvg_A Guanylate kinase, GMP k 38.9 12 0.00041 35.5 1.9 22 34-57 3-24 (198)
310 2wwf_A Thymidilate kinase, put 38.9 16 0.00055 34.5 2.9 23 34-58 9-31 (212)
311 3auy_A DNA double-strand break 38.8 15 0.00051 38.7 2.9 25 36-62 26-50 (371)
312 2ze6_A Isopentenyl transferase 38.8 14 0.00048 36.5 2.5 20 37-58 3-22 (253)
313 3vkw_A Replicase large subunit 38.7 13 0.00046 40.1 2.5 32 22-53 141-179 (446)
314 3crm_A TRNA delta(2)-isopenten 38.6 14 0.00049 38.1 2.6 21 36-58 6-26 (323)
315 3qks_A DNA double-strand break 38.3 18 0.0006 34.5 3.1 25 36-62 24-48 (203)
316 2zr9_A Protein RECA, recombina 38.2 26 0.00088 36.6 4.5 29 32-60 58-86 (349)
317 1m7g_A Adenylylsulfate kinase; 38.1 15 0.0005 35.1 2.4 19 32-50 22-40 (211)
318 2rhm_A Putative kinase; P-loop 38.0 15 0.00052 34.1 2.5 22 35-58 5-26 (193)
319 1xp8_A RECA protein, recombina 37.8 26 0.00089 36.8 4.5 26 33-58 72-97 (366)
320 2zpa_A Uncharacterized protein 37.8 18 0.00063 41.2 3.5 38 18-58 177-214 (671)
321 1ly1_A Polynucleotide kinase; 37.8 17 0.00058 33.2 2.8 20 37-58 4-23 (181)
322 1aky_A Adenylate kinase; ATP:A 37.8 12 0.00043 35.8 1.9 21 35-57 4-24 (220)
323 3vkg_A Dynein heavy chain, cyt 37.6 27 0.00093 47.1 5.5 40 14-53 885-924 (3245)
324 3tmk_A Thymidylate kinase; pho 37.4 12 0.00042 36.2 1.7 22 34-57 4-25 (216)
325 2r8r_A Sensor protein; KDPD, P 37.3 40 0.0014 32.8 5.4 24 37-60 8-31 (228)
326 1tev_A UMP-CMP kinase; ploop, 37.3 11 0.00039 34.9 1.5 16 35-50 3-18 (196)
327 1htw_A HI0065; nucleotide-bind 37.2 13 0.00043 34.0 1.7 25 32-58 30-54 (158)
328 2vp4_A Deoxynucleoside kinase; 37.1 11 0.00037 36.7 1.4 17 34-50 19-35 (230)
329 3lnc_A Guanylate kinase, GMP k 37.0 9.4 0.00032 37.1 0.9 19 32-50 24-42 (231)
330 1rz3_A Hypothetical protein rb 36.9 30 0.001 32.5 4.5 27 24-50 6-37 (201)
331 1zp6_A Hypothetical protein AT 36.5 14 0.00048 34.3 2.0 25 32-58 6-30 (191)
332 1nn5_A Similar to deoxythymidy 36.4 19 0.00063 34.1 2.9 23 34-58 8-30 (215)
333 4eaq_A DTMP kinase, thymidylat 36.2 17 0.0006 35.3 2.7 23 34-58 25-47 (229)
334 4edh_A DTMP kinase, thymidylat 36.1 12 0.00042 36.0 1.5 17 34-50 5-21 (213)
335 1ak2_A Adenylate kinase isoenz 36.1 20 0.00067 34.8 3.1 22 35-58 16-37 (233)
336 2z0h_A DTMP kinase, thymidylat 36.1 13 0.00045 34.6 1.7 19 37-57 2-20 (197)
337 4tmk_A Protein (thymidylate ki 35.9 13 0.00045 35.8 1.7 17 34-50 2-18 (213)
338 1w36_B RECB, exodeoxyribonucle 35.6 34 0.0012 42.1 5.8 22 36-57 17-38 (1180)
339 3v9p_A DTMP kinase, thymidylat 35.2 12 0.00042 36.4 1.4 23 33-57 23-45 (227)
340 3a00_A Guanylate kinase, GMP k 35.2 15 0.00053 34.1 2.0 22 35-58 1-22 (186)
341 4eun_A Thermoresistant glucoki 34.7 22 0.00075 33.5 3.1 24 33-58 27-50 (200)
342 1kag_A SKI, shikimate kinase I 34.6 23 0.0008 32.1 3.2 22 35-58 4-25 (173)
343 3u06_A Protein claret segregat 34.6 17 0.0006 38.8 2.6 39 15-53 114-157 (412)
344 1ypw_A Transitional endoplasmi 34.6 13 0.00045 43.7 1.7 25 34-60 510-534 (806)
345 4gp7_A Metallophosphoesterase; 34.6 11 0.00038 34.7 0.9 18 33-50 7-24 (171)
346 2cdn_A Adenylate kinase; phosp 34.4 22 0.00075 33.4 3.0 21 36-58 21-41 (201)
347 2pez_A Bifunctional 3'-phospho 34.3 14 0.00047 34.1 1.5 17 34-50 4-20 (179)
348 1v5w_A DMC1, meiotic recombina 34.3 29 0.00098 36.1 4.1 23 33-55 120-142 (343)
349 1qhx_A CPT, protein (chloramph 34.3 15 0.00053 33.6 1.9 22 35-58 3-24 (178)
350 1y63_A LMAJ004144AAA protein; 33.8 23 0.0008 32.8 3.1 23 34-58 9-31 (184)
351 1gtv_A TMK, thymidylate kinase 33.8 12 0.00042 35.4 1.1 20 37-58 2-21 (214)
352 2ius_A DNA translocase FTSK; n 33.8 29 0.00098 38.3 4.1 21 34-54 166-186 (512)
353 1s96_A Guanylate kinase, GMP k 33.8 23 0.00079 34.2 3.1 27 30-58 11-37 (219)
354 2yvu_A Probable adenylyl-sulfa 33.6 21 0.00071 33.1 2.7 17 34-50 12-28 (186)
355 1p5z_B DCK, deoxycytidine kina 33.6 14 0.00048 36.7 1.5 17 34-50 23-39 (263)
356 1nlf_A Regulatory protein REPA 33.1 22 0.00075 35.6 2.9 26 31-56 26-51 (279)
357 3be4_A Adenylate kinase; malar 32.9 24 0.00082 33.7 3.1 21 36-58 6-26 (217)
358 1e6c_A Shikimate kinase; phosp 32.9 17 0.00059 33.0 1.9 15 36-50 3-17 (173)
359 1ukz_A Uridylate kinase; trans 32.9 15 0.00051 34.6 1.5 15 36-50 16-30 (203)
360 1zuh_A Shikimate kinase; alpha 32.9 16 0.00056 33.1 1.8 15 36-50 8-22 (168)
361 3t61_A Gluconokinase; PSI-biol 32.7 25 0.00086 33.0 3.1 20 36-57 19-38 (202)
362 3d3q_A TRNA delta(2)-isopenten 32.5 22 0.00075 37.0 2.8 15 36-50 8-22 (340)
363 2pbr_A DTMP kinase, thymidylat 32.4 17 0.00057 33.8 1.8 19 37-57 2-20 (195)
364 3lv8_A DTMP kinase, thymidylat 32.4 16 0.00056 35.8 1.7 22 34-57 26-47 (236)
365 3hr8_A Protein RECA; alpha and 32.4 33 0.0011 35.9 4.2 28 32-59 58-85 (356)
366 1knq_A Gluconate kinase; ALFA/ 31.8 24 0.00081 32.2 2.7 21 35-57 8-28 (175)
367 2px0_A Flagellar biosynthesis 31.8 54 0.0018 33.2 5.6 19 35-53 105-123 (296)
368 3dzd_A Transcriptional regulat 31.1 43 0.0015 35.1 5.0 28 23-50 140-167 (368)
369 3fb4_A Adenylate kinase; psych 31.0 17 0.00059 34.6 1.6 19 37-57 2-20 (216)
370 1qf9_A UMP/CMP kinase, protein 30.9 16 0.00056 33.7 1.5 15 36-50 7-21 (194)
371 3dl0_A Adenylate kinase; phosp 30.8 25 0.00086 33.4 2.8 19 37-57 2-20 (216)
372 3nwn_A Kinesin-like protein KI 30.6 29 0.00098 36.4 3.3 35 19-53 83-123 (359)
373 2xb4_A Adenylate kinase; ATP-b 30.4 18 0.00061 34.9 1.6 20 37-58 2-21 (223)
374 2ehv_A Hypothetical protein PH 30.3 22 0.00077 34.4 2.4 23 31-53 26-48 (251)
375 3qf7_A RAD50; ABC-ATPase, ATPa 30.2 27 0.00091 36.7 3.1 24 37-62 25-48 (365)
376 1e4v_A Adenylate kinase; trans 29.8 18 0.0006 34.6 1.5 20 37-58 2-21 (214)
377 2vli_A Antibiotic resistance p 29.6 16 0.00054 33.6 1.0 21 35-57 5-25 (183)
378 3gbj_A KIF13B protein; kinesin 29.5 36 0.0012 35.6 3.8 37 17-53 69-111 (354)
379 2ocp_A DGK, deoxyguanosine kin 29.4 17 0.00059 35.4 1.3 21 35-57 2-22 (241)
380 3tqc_A Pantothenate kinase; bi 29.1 51 0.0018 33.9 4.9 36 21-58 72-113 (321)
381 1znw_A Guanylate kinase, GMP k 29.1 31 0.0011 32.6 3.1 26 31-58 16-41 (207)
382 2bbw_A Adenylate kinase 4, AK4 29.0 30 0.001 33.8 3.0 22 35-58 27-48 (246)
383 2pt5_A Shikimate kinase, SK; a 28.9 20 0.00069 32.4 1.6 19 37-57 2-20 (168)
384 3a4m_A L-seryl-tRNA(SEC) kinas 28.3 20 0.00067 35.6 1.5 22 35-58 4-25 (260)
385 2qt1_A Nicotinamide riboside k 28.2 24 0.00081 33.4 2.1 22 34-57 20-41 (207)
386 2owm_A Nckin3-434, related to 28.0 33 0.0011 37.0 3.4 36 18-53 114-155 (443)
387 2zfi_A Kinesin-like protein KI 28.0 32 0.0011 36.2 3.2 35 19-53 68-108 (366)
388 3dm5_A SRP54, signal recogniti 27.9 87 0.003 33.7 6.7 18 36-53 101-118 (443)
389 3uie_A Adenylyl-sulfate kinase 27.3 41 0.0014 31.5 3.6 18 33-50 23-40 (200)
390 4hlc_A DTMP kinase, thymidylat 27.2 1E+02 0.0035 29.1 6.4 16 35-50 2-17 (205)
391 4a74_A DNA repair and recombin 27.1 24 0.00081 33.7 1.9 23 31-53 21-43 (231)
392 2j9r_A Thymidine kinase; TK1, 27.1 63 0.0022 31.0 4.8 28 34-61 27-54 (214)
393 3ld9_A DTMP kinase, thymidylat 26.6 22 0.00076 34.5 1.5 17 34-50 20-36 (223)
394 4dzr_A Protein-(glutamine-N5) 26.3 70 0.0024 29.7 5.1 39 15-53 8-48 (215)
395 3io5_A Recombination and repai 26.2 57 0.002 33.6 4.5 25 37-61 30-54 (333)
396 4ag6_A VIRB4 ATPase, type IV s 26.2 30 0.001 36.6 2.6 19 34-52 34-52 (392)
397 2bdt_A BH3686; alpha-beta prot 25.9 31 0.0011 31.9 2.4 21 36-58 3-23 (189)
398 2nr8_A Kinesin-like protein KI 25.7 39 0.0013 35.3 3.3 35 19-53 82-122 (358)
399 3b9q_A Chloroplast SRP recepto 25.3 57 0.0019 33.1 4.4 23 35-59 100-122 (302)
400 2cbz_A Multidrug resistance-as 25.2 22 0.00077 34.7 1.3 51 1-57 1-51 (237)
401 3bs4_A Uncharacterized protein 25.1 72 0.0025 31.6 5.0 16 34-49 20-35 (260)
402 3asz_A Uridine kinase; cytidin 24.9 34 0.0012 32.2 2.5 17 34-50 5-21 (211)
403 1g5t_A COB(I)alamin adenosyltr 24.8 56 0.0019 30.9 3.9 34 28-61 21-54 (196)
404 1vht_A Dephospho-COA kinase; s 24.4 24 0.00084 33.6 1.4 21 35-57 4-24 (218)
405 2i1q_A DNA repair and recombin 24.0 31 0.0011 35.2 2.2 23 33-55 96-118 (322)
406 3tif_A Uncharacterized ABC tra 23.9 30 0.001 33.7 1.9 24 32-57 28-51 (235)
407 3kl4_A SRP54, signal recogniti 23.6 64 0.0022 34.6 4.6 18 36-53 98-115 (433)
408 2pze_A Cystic fibrosis transme 23.5 25 0.00085 34.2 1.2 49 3-57 6-54 (229)
409 1sgw_A Putative ABC transporte 23.2 27 0.00093 33.6 1.4 24 32-57 32-55 (214)
410 3qkt_A DNA double-strand break 22.8 44 0.0015 34.5 3.1 25 36-62 24-48 (339)
411 1odf_A YGR205W, hypothetical 3 22.8 47 0.0016 33.6 3.2 15 36-50 32-46 (290)
412 2ghi_A Transport protein; mult 22.8 32 0.0011 34.1 1.9 50 3-58 17-67 (260)
413 2iut_A DNA translocase FTSK; n 22.7 59 0.002 36.3 4.1 21 35-55 214-234 (574)
414 1vma_A Cell division protein F 22.6 75 0.0026 32.3 4.7 33 20-52 79-121 (306)
415 2ff7_A Alpha-hemolysin translo 22.5 27 0.00091 34.4 1.2 24 32-57 32-55 (247)
416 3tqf_A HPR(Ser) kinase; transf 22.5 39 0.0013 31.5 2.2 16 35-50 16-31 (181)
417 3rlf_A Maltose/maltodextrin im 22.5 4.3 0.00015 43.1 -4.9 50 1-58 1-50 (381)
418 2orw_A Thymidine kinase; TMTK, 22.3 26 0.00089 32.7 1.0 13 234-246 76-88 (184)
419 3hjn_A DTMP kinase, thymidylat 22.3 1.6E+02 0.0056 27.4 6.8 13 38-50 3-15 (197)
420 1rj9_A FTSY, signal recognitio 21.7 97 0.0033 31.4 5.3 22 35-58 102-123 (304)
421 1e69_A Chromosome segregation 21.6 42 0.0014 34.4 2.6 24 36-61 25-48 (322)
422 4h1g_A Maltose binding protein 21.6 53 0.0018 37.9 3.7 38 15-52 438-480 (715)
423 2zu0_C Probable ATP-dependent 21.5 42 0.0014 33.4 2.5 47 4-58 21-67 (267)
424 2pcj_A ABC transporter, lipopr 21.5 27 0.00094 33.7 1.0 46 4-57 5-50 (224)
425 3cmw_A Protein RECA, recombina 21.4 64 0.0022 41.0 4.5 29 32-60 31-59 (1706)
426 2i3b_A HCR-ntpase, human cance 21.3 56 0.0019 30.6 3.2 22 35-58 1-22 (189)
427 1mv5_A LMRA, multidrug resista 21.3 26 0.0009 34.3 0.9 24 32-57 25-48 (243)
428 2d2e_A SUFC protein; ABC-ATPas 21.3 42 0.0014 33.0 2.4 50 1-58 1-50 (250)
429 1sq5_A Pantothenate kinase; P- 21.1 82 0.0028 31.9 4.7 24 33-58 78-101 (308)
430 2og2_A Putative signal recogni 21.1 76 0.0026 33.1 4.5 22 35-58 157-178 (359)
431 3cmu_A Protein RECA, recombina 21.0 60 0.0021 41.9 4.2 22 32-53 1424-1445(2050)
432 1via_A Shikimate kinase; struc 20.8 57 0.0019 29.6 3.1 20 37-58 6-25 (175)
433 2iyv_A Shikimate kinase, SK; t 20.8 59 0.002 29.7 3.2 15 36-50 3-17 (184)
434 1w1w_A Structural maintenance 20.5 51 0.0017 35.3 3.1 28 32-61 23-50 (430)
435 2jeo_A Uridine-cytidine kinase 20.4 47 0.0016 32.3 2.6 27 24-50 14-40 (245)
436 1tf7_A KAIC; homohexamer, hexa 20.4 1.2E+02 0.0041 33.4 6.1 31 24-54 27-58 (525)
437 1vpl_A ABC transporter, ATP-bi 20.3 32 0.0011 34.1 1.3 49 1-57 13-61 (256)
438 1g6h_A High-affinity branched- 20.1 32 0.0011 34.0 1.2 47 3-57 7-53 (257)
439 1z6t_A APAF-1, apoptotic prote 20.1 55 0.0019 36.5 3.4 27 24-50 132-162 (591)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=3.1e-89 Score=791.88 Aligned_cols=596 Identities=22% Similarity=0.309 Sum_probs=418.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 004379 15 FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKL 94 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (758)
|+|||+|++||++|++++.+|+++++|||||||||+|||+|++.|+...+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~------------------------------ 51 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK------------------------------ 51 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHT------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcC------------------------------
Confidence 78999999999999999999999999999999999999999999987643
Q ss_pred CeEEEeCCccchHHHHHHHhhcCCC--CCceEEecCCccccc-chhhhhccCcchhH---HHHHHhhc---CCCCCCCCC
Q 004379 95 PTILYTSRTHSQLRQVIQELKTSNY--RPKMVILGSREQLCI-HREVSLLRGSAQNN---ACRFLCKK---GTNRRCNHH 165 (758)
Q Consensus 95 ~kIi~~trT~sql~Q~i~eLkkl~~--~~~~~~l~sr~~lCi-~~~~~~~~~~~~~~---~c~~l~~~---~~~~~c~~~ 165 (758)
++|+|+|+|++|+.|++++++++.. .+++++++||..+|+ ++.+..+.+...++ .|+.+.+. .....|+|+
T Consensus 52 ~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~ 131 (620)
T 4a15_A 52 LKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYF 131 (620)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTC
T ss_pred CeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcc
Confidence 4899999999999999999887632 678899999988999 99876655444444 78876541 113689998
Q ss_pred cchhhhhhcC-CCCCCCCCChhHHHHhcccCCCcchhhhhhhhcCccEEEecCccccChhhhhc----cCCCccccEEEE
Q 004379 166 SRVADYMKNN-PHLGDEPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKG----LGVEWKNSILIF 240 (758)
Q Consensus 166 ~~~~~~~~~~-~~~~~~~~di~~l~~~~~~~~~CpY~~~r~~~~~AdIIv~ny~yLl~~~~~~~----~~i~~~~~ilIi 240 (758)
.+.+. ..+. ..+...++|+|++++.|+.++.||||.+|+.+..|||||+||+||||+.+++. ++++++++++||
T Consensus 132 ~~~~~-~gd~~~~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~ 210 (620)
T 4a15_A 132 NFKIR-SDETKRFLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIIL 210 (620)
T ss_dssp SGGGG-CHHHHHHHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEE
T ss_pred cccCc-ccchhHHhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEE
Confidence 76532 1000 00112457999999999999999999999999999999999999999998743 457899999999
Q ss_pred eCCcchHHHHhhhcccccChhhHHHHHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCCcccCCC
Q 004379 241 DEAHNLEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGF 320 (758)
Q Consensus 241 DEAHnL~d~~~~~~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~ 320 (758)
||||||+|+|++++|.++|...+..+.+++.+...... . ........+..+...++..+..+... .....
T Consensus 211 DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~~~~~~~--~-------~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 280 (620)
T 4a15_A 211 DEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPEL--S-------QKIHVSDLIEMIRSALQSMVSERCGK-GDVRI 280 (620)
T ss_dssp TTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHHTTCCEE--E-------TTEEHHHHHHHHHHHHHHHHHHHCSS-SCEEE
T ss_pred ECCCchHHHHHHhhcceeCHHHHHHHHHHHHHHHhhhh--h-------hhHHHHHHHHHHHHHHHHHHHHhhcc-cccCC
Confidence 99999999999999999999999999888765421100 0 00001111222222233333332211 00000
Q ss_pred cCChhhHHHHHHH-cCCChhhHHHHHHHHHHHHHHHHHhhhhcccCcccchHHHHHHHHHHHHccCCCCCCcceEEEEEE
Q 004379 321 TKPGPYIYELLAD-LNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVRE 399 (758)
Q Consensus 321 ~~~~~~~~~~l~~-~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~y~~~~~~ 399 (758)
....+...+.. .+.....+..+.+.+..+.+.+.+... .........+..+.+++..+. ... ...|..|+..
T Consensus 281 --~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~fl~~~~-~~~---~~~~~~~~~~ 353 (620)
T 4a15_A 281 --RFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKE-KVGKVPFSYCSSVASRIIAFS-DQD---EEKYAAILSP 353 (620)
T ss_dssp --CTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCCCHHHHHHHHHHHHH-TSC---TTTEEEEEEC
T ss_pred --ChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhcc-ccccccccHHHHHHHHHHHHh-hcC---CCCEEEEEEe
Confidence 01122222222 233223333333333333332222211 112233455677778887772 211 1124444420
Q ss_pred cccchhhhccCCCCceEEEEecCchhhchhhhcccccEEEEecccCCChHhHHhhhCCCCCccccCCccccCCCeEEEEe
Q 004379 400 ADANAADVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIV 479 (758)
Q Consensus 400 ~~~~~~~~~~~~~~~~l~~~~l~p~~~l~~~l~~~~~~vil~SaTL~p~~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~ 479 (758)
..+..|+++|++|+..|+ ++ +++++|||||||+|+++|.+.||++ ...+..+++|+.++..++++
T Consensus 354 -----------~~~~~l~~~~l~~~~~l~-~~--~~~~~il~SaTL~p~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~ 418 (620)
T 4a15_A 354 -----------EDGGYMQAACLDPSGILE-VL--KESKTIHMSGTLDPFDFYSDITGFE-IPFKKIGEIFPPENRYIAYY 418 (620)
T ss_dssp -----------GGGCEEEEEECCTHHHHG-GG--GGSEEEEEESSCCSHHHHHHHHCCC-CCEEECCCCSCGGGEEEEEE
T ss_pred -----------CCCcEEEEEECCHHHHHH-HH--hCCeEEEEccCCCcHHHHHHHhCCC-ceeeecCCCCCHHHeEEEEe
Confidence 123679999999999999 65 8999999999999999999999998 55566677777666655543
Q ss_pred ecCCCCcceeeeccccCCHHHHHHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCee
Q 004379 480 PVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV 559 (758)
Q Consensus 480 ~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~ 559 (758)
.+ ++++|++|+ +.+.+++++.|.++++.+|||+|||||||++|+++++.|+ ... .+
T Consensus 419 -~~-----~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~-~~~------------~~---- 474 (620)
T 4a15_A 419 -DG-----VSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS-FEH------------MK---- 474 (620)
T ss_dssp -CC-----C-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC-SCC------------EE----
T ss_pred -CC-----CCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH-hcc------------hh----
Confidence 32 456777765 5677899999999999999999999999999999999887 210 11
Q ss_pred CCCCC--CChHHHHHHHHHHhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhh
Q 004379 560 EPRQS--SLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQ 637 (758)
Q Consensus 560 e~~~~--~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~ 637 (758)
+.++. .+..+++++|+ ++++|||||+||+|||||||+|+.+++|||+|||||+| ||.+++|++|++++++
T Consensus 475 ~~q~~~~~~~~~ll~~f~-------~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g 546 (620)
T 4a15_A 475 EYRGIDQKELYSMLKKFR-------RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYG 546 (620)
T ss_dssp CCTTCCSHHHHHHHHHHT-------TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHS
T ss_pred ccCCCChhHHHHHHHHhc-------cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhC
Confidence 33332 24678888887 25899999999999999999999999999999999999 5999999999999876
Q ss_pred ccCCCccccccccCCcchhHHHHHHHHHHHhcCccccCCCCeEEEEEeeccCCCccccccchhhhhhhhcccCchhHHHH
Q 004379 638 SQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQISLWIQPHIQCYSKFGDVVY 717 (758)
Q Consensus 638 ~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR~~~D~g~villD~R~~~~~y~~~l~~~l~~~~~~~~~~~~~~~ 717 (758)
++|. .++..| |+++++||+||+|||++|+|+|+|+|+|| ++|++.||+ ++... . ...
T Consensus 547 ~~~~------------~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~llD~R~--~~~~~~LP~-~~~~~---~----~~~ 603 (620)
T 4a15_A 547 KGWE------------YSVVYP-TAIKIRQEIGRLIRSAEDTGACVILDKRA--GQFRKFIPD-MKKTS---D----PAS 603 (620)
T ss_dssp CHHH------------HHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEECGGG--GGGGGGSTT-CEEES---C----HHH
T ss_pred CCch------------HHhHHH-HHHHHHHHhCccccCCCceEEEEEEccch--HHHHHhCCc-hhhhc---C----cHH
Confidence 5431 012345 99999999999999999999999999999 788888887 54322 2 234
Q ss_pred HHHHHHHHhhh
Q 004379 718 TLTRFFREERI 728 (758)
Q Consensus 718 ~~~~Ff~~~~~ 728 (758)
++.+||.....
T Consensus 604 ~~~~f~~~~~~ 614 (620)
T 4a15_A 604 DIYNFFISAQA 614 (620)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHhChhh
Confidence 68899977643
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=2.6e-78 Score=696.00 Aligned_cols=522 Identities=22% Similarity=0.306 Sum_probs=383.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
.|++||.|.+||+.|++++.+++++++|||||||||+|||+|++.+ +
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~----~----------------------------- 47 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV----K----------------------------- 47 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH----C-----------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC----C-----------------------------
Confidence 4789999999999999999999999999999999999999999961 1
Q ss_pred CCeEEEeCCccchHHHHHHHhhcCC--CCCceEEecCCcccccchhhhhccCcchhHHHHHHhhcCCCCCCCCCcchhhh
Q 004379 94 LPTILYTSRTHSQLRQVIQELKTSN--YRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADY 171 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkkl~--~~~~~~~l~sr~~lCi~~~~~~~~~~~~~~~c~~l~~~~~~~~c~~~~~~~~~ 171 (758)
++|+|+|+|++|+.|+.++++++. ..+++++++||.++|+++... ..... . .|. .|+++....+
T Consensus 48 -~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~~~-~~~~~-~-~c~---------~c~~~~~~~~- 113 (551)
T 3crv_A 48 -PKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAEKG-AESED-I-PCK---------YCELKGSIVE- 113 (551)
T ss_dssp -SEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBCTT-CCGGG-C-CGG---------GCTTTTCCCC-
T ss_pred -CeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEccccccCcCchhc-CCCcc-c-ccC---------CCCCcccccc-
Confidence 589999999999999999999873 257788888887779998776 33211 1 342 4776543321
Q ss_pred hhcCCCCCCCCCChhHHHHh----cccCCCcchhhhhhhhcCccEEEecCccccChhhhhccCCCccccEEEEeCCcchH
Q 004379 172 MKNNPHLGDEPIDIEDLVNI----GRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHNLE 247 (758)
Q Consensus 172 ~~~~~~~~~~~~di~~l~~~----~~~~~~CpY~~~r~~~~~AdIIv~ny~yLl~~~~~~~~~i~~~~~ilIiDEAHnL~ 247 (758)
.+ ...++|++++. |+.++.|||+.+|+.+..|||||+||+||+++..+..+++.++..++||||||||+
T Consensus 114 ------~g-~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~ 186 (551)
T 3crv_A 114 ------VK-TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLD 186 (551)
T ss_dssp ------CC-CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGG
T ss_pred ------cc-ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchH
Confidence 12 24567776654 44789999999999999999999999999999887656666788999999999999
Q ss_pred HHHhhhcccccChhhHHHHHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCCccc-CCCcCChhh
Q 004379 248 GICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKE-LGFTKPGPY 326 (758)
Q Consensus 248 d~~~~~~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~ 326 (758)
| |++++|.+|+..++..+++++..... ..++..+.+.+......... ........
T Consensus 187 d-~~~~~s~~ls~~~l~~~~~~l~~~~~----------------------~~~l~~l~~~l~~~~~~~~~~~~~~~~~~- 242 (551)
T 3crv_A 187 K-VNELEERSLSEITIQMAIKQSKSEES----------------------RRILSKLLNQLREVVLPDEKYIKVENVPK- 242 (551)
T ss_dssp G-GGGGGCEEEEHHHHHHHHHHCSCHHH----------------------HHHHHHHHHHHTTSCCSCSSCEECSCCCC-
T ss_pred H-HHHhhceecCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHhhccccccccccChH-
Confidence 9 99999999999999988777643211 02333444444432110000 00000000
Q ss_pred HHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCcccchHHHHHHHHHHHHccCCCCCCcceEEEEEEcccchhh
Q 004379 327 IYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAAD 406 (758)
Q Consensus 327 ~~~~l~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 406 (758)
.....+..+.+.+.++.+ .... ........+..+.+++..+.. . + .| + ..
T Consensus 243 ---------~~~~~l~~l~~~l~~~~~---~~~~--~~~~~~~~~~~l~~~~~~~~~-~-~----~~-v-~~-------- 292 (551)
T 3crv_A 243 ---------LSKEELEILADDYEDIRK---DSLK--QGKVNKIHIGSILRFFSLLSI-G-S----FI-P-FS-------- 292 (551)
T ss_dssp ---------CCHHHHHHHHHHHHHHHH---HHHH--TTCBCCCHHHHHHHHHHHHHH-S-S----CE-E-EE--------
T ss_pred ---------HHHHHHHHHHHHHHHHHH---hhhh--cCCcccchHHHHHHHHHHHhc-c-C----Ce-E-ec--------
Confidence 001112222222222211 1111 111123346777777776654 1 1 13 2 11
Q ss_pred hccCCCCceEEEEecCchhhchhhhcccc-cEEEEecccCCChHhHHhhhCCCCCc-----cccCCccccCCCeEEEEee
Q 004379 407 VLKGKASRTLSWWCFNPGIAMQEFSRLEV-GSIILTSGTLSPMDSFAQELKLNFPL-----RVENPHVITSKQIWAGIVP 480 (758)
Q Consensus 407 ~~~~~~~~~l~~~~l~p~~~l~~~l~~~~-~~vil~SaTL~p~~~f~~~lGl~~~~-----~~~~~~~~~~~~~~~~~~~ 480 (758)
..+ .++++|++|+..|+ ++. ++ +++|||||||+|+++|.+.||++++. .+..+++| .+|..++ +|
T Consensus 293 ----~~~-~l~~~pl~~~~~l~-~~~-~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~-v~ 363 (551)
T 3crv_A 293 ----YSK-RLVIKNPEISYYLN-LLN-DNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECY-IG 363 (551)
T ss_dssp ----ETT-EEEEECCCTHHHHG-GGG-CTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEE-EE
T ss_pred ----cCC-EEEEEECCHHHHHH-HHh-ccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEE-Ee
Confidence 013 78999999999999 765 88 99999999999999999999997433 44556666 6776554 55
Q ss_pred cCCCCcceeeeccccCCHHHHHHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeC
Q 004379 481 VGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVE 560 (758)
Q Consensus 481 ~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e 560 (758)
.+ ++++|.+|+ +.+.+.+++.|.+++..+|||+|||||||++|+++++.+ .+.+++|
T Consensus 364 ~~-----~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~~-----------------~~~v~~q 420 (551)
T 3crv_A 364 VD-----VTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSRI-----------------SLPKYVE 420 (551)
T ss_dssp CS-----CCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTTC-----------------CSSEEEC
T ss_pred CC-----CCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHhc-----------------CCcEEEc
Confidence 43 345676676 677899999999999999999999999999999998621 2456777
Q ss_pred CCCCCChHHHHHHHHHHhccCCCCCeEEEEEecCccccccccC---CCCceEEEEEccCCCCCCCHHHHHHHHHHHHH-h
Q 004379 561 PRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFA---DHAGRAVVITGMPFATMTDPKVRLKREYLDLQ-A 636 (758)
Q Consensus 561 ~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~---~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~-~ 636 (758)
+++. +..+.++.|++ .+++|||||+||+|||||||+ |+.||+|||+|||||+| ||.+++|++|++++ |
T Consensus 421 ~~~~-~~~~~~~~~~~------~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g 492 (551)
T 3crv_A 421 SEDS-SVEDLYSAISA------NNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMN 492 (551)
T ss_dssp CSSC-CHHHHHHHTTS------SSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSS
T ss_pred CCCC-CHHHHHHHHHh------cCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhC
Confidence 6653 36677787762 347999999999999999999 99999999999999999 99999999999844 3
Q ss_pred hccCCCccccccccCCcchhHHHHHHHHHHHhcCccccCCCCeEEEEEeeccCCCccccc
Q 004379 637 QSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKS 696 (758)
Q Consensus 637 ~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR~~~D~g~villD~R~~~~~y~~ 696 (758)
+++|. .+|..+|+++++||+||+|||++|||+|+|+|+||.++.|++
T Consensus 493 ~~~~~-------------~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~~~~~~ 539 (551)
T 3crv_A 493 RENEE-------------FLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFESLYWKK 539 (551)
T ss_dssp TTTHH-------------HHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGSHHHHH
T ss_pred CchhH-------------HHHHHHHHHHHHHHhccCccCCCccEEEEEeehhcccchhhh
Confidence 32220 124444999999999999999999999999999998755444
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-71 Score=638.69 Aligned_cols=519 Identities=19% Similarity=0.268 Sum_probs=315.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 13 Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
.+|+|||.|.+||..|++++.+++++++|||||||||++||+|++.+.
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~-------------------------------- 51 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLK-------------------------------- 51 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHT--------------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCC--------------------------------
Confidence 357999999999999999999999999999999999999999998641
Q ss_pred CCCeEEEeCCccchHHHHHHHhhcCCCCCceEEecCCcccccchhhhhccCcchhHHHHHHhhcCCCCCCCCCcchhhhh
Q 004379 93 KLPTILYTSRTHSQLRQVIQELKTSNYRPKMVILGSREQLCIHREVSLLRGSAQNNACRFLCKKGTNRRCNHHSRVADYM 172 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLkkl~~~~~~~~l~sr~~lCi~~~~~~~~~~~~~~~c~~l~~~~~~~~c~~~~~~~~~~ 172 (758)
++|+|+|+|+++++|++++++++ .+++++++||.|+|+++....... ...|. .|.++....+.
T Consensus 52 --~~~~~~~~t~~l~~q~~~~~~~l--~~~~~~l~gr~~lC~~~~~~~~~~---~~~c~---------~c~~~~~~~~~- 114 (540)
T 2vl7_A 52 --KKVLIFTRTHSQLDSIYKNAKLL--GLKTGFLIGKSASCIYAQGDEEPD---EINCS---------KCRLKDKIKTI- 114 (540)
T ss_dssp --CEEEEEESCHHHHHHHHHHHGGG--TCCEEEC----------------------------------------------
T ss_pred --CcEEEEcCCHHHHHHHHHHHHhc--CCcEEEecCCccccCCchhccccc---ccCCC---------CCCchhccccc-
Confidence 48999999999999999999985 467888999999999987643211 11232 45554432211
Q ss_pred hcCCCCCC-CCCChhHHHHhcccCCCcchhhhhhhhcCccEEEecCccccChhhhhccC------CCccccEEEEeCCcc
Q 004379 173 KNNPHLGD-EPIDIEDLVNIGRTFGPCPYFMTRELQKTVDIVFAPYNYLIDPWFRKGLG------VEWKNSILIFDEAHN 245 (758)
Q Consensus 173 ~~~~~~~~-~~~di~~l~~~~~~~~~CpY~~~r~~~~~AdIIv~ny~yLl~~~~~~~~~------i~~~~~ilIiDEAHn 245 (758)
+. .+.++|+ .++++++.|||+.+|+.+..|||||+||+||+++..++.++ ++++.+++|||||||
T Consensus 115 ------gd~~~~~~~~--~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHn 186 (540)
T 2vl7_A 115 ------EDKEPSKLIE--EFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHN 186 (540)
T ss_dssp --------------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGG
T ss_pred ------ccCCcHHHHH--HHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEcccc
Confidence 11 1123333 34667899999999999999999999999999998875544 678999999999999
Q ss_pred hHHHHhhhcccccChhhHHHHHHHHHHHHHHhhhccCCCCCCCCChhHHHHHHHHHHHHHHHHHhCCCCcccCCCcCChh
Q 004379 246 LEGICADAASFDLSSGLLTACISEAKNCIDISSTRRGQSSDETLNPDNFAILRALLLKLEKRIAEVPINSKELGFTKPGP 325 (758)
Q Consensus 246 L~d~~~~~~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 325 (758)
|++ +++++|.+++...+..+++++...... . .... ..+..++..+.+.+...........+. .
T Consensus 187 l~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~---~-------~~~~---~~l~~~~~~l~~~l~~~~~~~~~~~~~---~ 249 (540)
T 2vl7_A 187 LLE-ADKWFTRKISRKMLERALKEIEIVERL---N-------RIDA---KKVKDYINLLIDYMSKLIKDGRCHELS---L 249 (540)
T ss_dssp GGG-GGGGGCEEECHHHHHHHHHHHHHHHHT---T-------CCCC---HHHHHHHHHHHHHHHTSCCSSSEEEES---C
T ss_pred HHH-HHHHhccccCHHHHHHHHHHHHHHHhc---c-------hhhH---HHHHHHHHHHHHHHHHhhccccccchh---h
Confidence 965 899999999999999998887653221 0 0111 234445555656555432110000000 0
Q ss_pred hHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhhhhcccCcccchHHHHHHHHHHHHccCCCCCCcceEEEEEEcccchh
Q 004379 326 YIYELLADLNITQETAYKLIDIVEVAAELLQEDKLQNKKSTTACRIESISNILKIIFRDKGTAHSAYYRVHVREADANAA 405 (758)
Q Consensus 326 ~~~~~l~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~ 405 (758)
. .....+.+..+...++ .+.+. .+.......+..+.+++. . . +.+.+.
T Consensus 250 ~-------~~~~~~~l~~l~~~~~----~~~~~---~~~~~~~~~l~~~l~~~~---~---~-----~~~~~~------- 297 (540)
T 2vl7_A 250 M-------PLPDRETNGELIVVTR----AYLNI---DEGPVKKSSLKSLLKFVE---M---K-----GDLYNC------- 297 (540)
T ss_dssp C-------CCCCHHHHHHHHHHHH----HHHTT---CCSSSCCCHHHHHHHHHH---S---C-----CEEEEE-------
T ss_pred c-------ccccHHHHHHHHHHHH----HHHHh---hccCccHHHHHHHHHHHH---h---C-----CCEEEE-------
Confidence 0 0000111112222211 11111 111111234454444432 1 1 112221
Q ss_pred hhccCCCCceEEEEecCchhhchhhhcccccEEEEecccCCChHhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCC
Q 004379 406 DVLKGKASRTLSWWCFNPGIAMQEFSRLEVGSIILTSGTLSPMDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSG 485 (758)
Q Consensus 406 ~~~~~~~~~~l~~~~l~p~~~l~~~l~~~~~~vil~SaTL~p~~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (758)
+..+.+.|.+....+.+... ..+++|||||||+|...+...++ ..+.. .+...+. . ++
T Consensus 298 -------~~~l~~~P~~~~~~l~~~~~-~~~~~IltSATL~p~~~~~~~f~----~~~~~--~~g~~~~--~-~~----- 355 (540)
T 2vl7_A 298 -------NGSLVKVPSDVNQLIEDALN-VKTFKVLMSGTLPESLTLTNSYK----IVVNE--SYGRGEY--Y-YC----- 355 (540)
T ss_dssp -------TTEEEEECSCHHHHHHHHTC-CSSCEEEEESSCCTTCCCTTEEE----EECCC--C-CCCEE--E-EC-----
T ss_pred -------CCeEEEehHHHHHHHHHhcC-ccCCeEEEcccCCCCcccchhcC----Cchhh--eecCCcc--e-ec-----
Confidence 11455666666655555432 45667999999999311100000 01111 1111111 1 11
Q ss_pred cceeeeccccCCHHHHHHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCC
Q 004379 486 YLLNSSYRNRDSIEYKQELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSS 565 (758)
Q Consensus 486 ~~l~~~y~~r~~~~~~~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~ 565 (758)
..++++|+.|++ .| +.+++.|.+++...|||+|||||||..|+++++.|+. +.+++++++ .
T Consensus 356 ~~l~s~f~~r~~-~~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~----------------~~~~~q~~~-~ 416 (540)
T 2vl7_A 356 PNVTSELRKRNS-NI-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG----------------IPVIEENKK-T 416 (540)
T ss_dssp TTCCCCGGGHHH-HH-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT----------------SCEEESTTT-C
T ss_pred cccCCCcccccC-HH-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc----------------CceEecCCC-C
Confidence 235677877653 46 8999999999999999999999999999999988753 345666554 4
Q ss_pred ChHHHHHHHHHHhccCCCCCeEEEEEecCccccccccCCC--CceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCc
Q 004379 566 LFPLAIEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADH--AGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEY 643 (758)
Q Consensus 566 ~~~~~i~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~--~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~ 643 (758)
+..+++++|++ +++|||||++|+|||||||+|+ .+++|||+|||||+|+||.+++|++|++++++++|.
T Consensus 417 ~~~~~l~~f~~-------~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~-- 487 (540)
T 2vl7_A 417 RHEEVLELMKT-------GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDED-- 487 (540)
T ss_dssp CHHHHHHHHHT-------SCCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHH--
T ss_pred cHHHHHHHHhc-------CCeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChh--
Confidence 68889999974 3689999999999999999998 899999999999999999999999999999887763
Q ss_pred cccccccCCcchhHHHHHHHHHHHhcCccccCCCCeEEEEEeeccCCCccccccc
Q 004379 644 KETKLSFLSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHPSRKSQI 698 (758)
Q Consensus 644 ~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR~~~D~g~villD~R~~~~~y~~~l 698 (758)
++..|.|+++++||+||+|||++|+|+|+|+|+||.+.+||+.|
T Consensus 488 -----------~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l 531 (540)
T 2vl7_A 488 -----------SIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGI 531 (540)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTC
T ss_pred -----------HHHHHHHHHHHHHHhCCcccCCCccEEEEEEccccCcchhhccc
Confidence 34567789999999999999999999999999999999999988
No 4
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.73 E-value=6.7e-16 Score=169.26 Aligned_cols=120 Identities=15% Similarity=0.194 Sum_probs=82.9
Q ss_pred HHHHhhh-cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCC
Q 004379 508 IVNIARI-VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSG 585 (758)
Q Consensus 508 i~~~~~~-~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~ 585 (758)
+..+... ..+.+|||+++....+.+++.++.... ...++..+- ..+....++.|++ ++.
T Consensus 234 l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------g~~ 294 (395)
T 3pey_A 234 LTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGH-------------EVSILHGDLQTQERDRLIDDFRE------GRS 294 (395)
T ss_dssp HHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECTTSCHHHHHHHHHHHHT------TSC
T ss_pred HHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCC-------------cEEEeCCCCCHHHHHHHHHHHHC------CCC
Confidence 3334433 346899999999999999998875421 122333222 2346677788875 456
Q ss_pred eEEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHH
Q 004379 586 AVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAV 665 (758)
Q Consensus 586 ~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~ 665 (758)
.||+++ ..+++|||+|+ ++.||..++|...... . ....+
T Consensus 295 ~vlv~T--~~~~~Gidip~--~~~Vi~~~~p~~~~~~----------------------------~---------s~~~~ 333 (395)
T 3pey_A 295 KVLITT--NVLARGIDIPT--VSMVVNYDLPTLANGQ----------------------------A---------DPATY 333 (395)
T ss_dssp CEEEEC--GGGSSSCCCTT--EEEEEESSCCBCTTSS----------------------------B---------CHHHH
T ss_pred CEEEEC--ChhhcCCCccc--CCEEEEcCCCCCCcCC----------------------------C---------CHHHh
Confidence 799998 89999999997 8899999888521100 0 03556
Q ss_pred HHhcCccccCCCCeEEEEEeec
Q 004379 666 NQAVGRVIRHRHDYGAIIFCDE 687 (758)
Q Consensus 666 ~QaiGRlIR~~~D~g~villD~ 687 (758)
.|++||+-|...+--+++++++
T Consensus 334 ~Qr~GR~gR~g~~g~~~~~~~~ 355 (395)
T 3pey_A 334 IHRIGRTGRFGRKGVAISFVHD 355 (395)
T ss_dssp HHHHTTSSCTTCCEEEEEEECS
T ss_pred hHhccccccCCCCceEEEEEec
Confidence 8999999998877666666665
No 5
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.73 E-value=7e-16 Score=169.13 Aligned_cols=107 Identities=15% Similarity=0.083 Sum_probs=77.2
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||++|....+.+++.+..... ....+..+- ..+..+.++.|++ ++..||+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------~~~~vlv~T-- 307 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQNF-------------PAIAIHRGMPQEERLSRYQQFKD------FQRRILVAT-- 307 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TCCSEEEES--
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCC-------------cEEEEeCCCCHHHHHHHHHHHhc------CCCcEEEEC--
Confidence 456899999999999999998875421 112232222 2346677788874 457899998
Q ss_pred CccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCccc
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVI 673 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlI 673 (758)
..+++|||+++ ++.||..++|. + ...+.|++||+-
T Consensus 308 ~~~~~Gidi~~--~~~Vi~~~~p~----s---------------------------------------~~~~~Qr~GR~~ 342 (391)
T 1xti_A 308 NLFGRGMDIER--VNIAFNYDMPE----D---------------------------------------SDTYLHRVARAG 342 (391)
T ss_dssp CCCSSCBCCTT--EEEEEESSCCS----S---------------------------------------HHHHHHHHCBCS
T ss_pred ChhhcCCCccc--CCEEEEeCCCC----C---------------------------------------HHHHHHhccccc
Confidence 89999999988 88999988774 1 234579999999
Q ss_pred cCCCCeEEEEEeec
Q 004379 674 RHRHDYGAIIFCDE 687 (758)
Q Consensus 674 R~~~D~g~villD~ 687 (758)
|..++--+++++++
T Consensus 343 R~g~~g~~~~~~~~ 356 (391)
T 1xti_A 343 RFGTKGLAITFVSD 356 (391)
T ss_dssp SSCCCCEEEEEECS
T ss_pred CCCCceEEEEEEcc
Confidence 98766555556554
No 6
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=1.7e-15 Score=175.15 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=62.5
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCC
Q 004379 12 EFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (758)
Q Consensus 12 ~Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (758)
.++|+ |+|.|.+.+..+... +++.+++.||||+|||++|++|++......+..
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~------------------------ 91 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------------------------ 91 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------------------------
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc------------------------
Confidence 47887 899999988776521 568899999999999999999999876653310
Q ss_pred CCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 91 DSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 91 ~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
....++++|.++|..+..|+.+++++
T Consensus 92 ~~~~~~~lvl~Ptr~La~Q~~~~~~~ 117 (579)
T 3sqw_A 92 SQYMVKAVIVAPTRDLALQIEAEVKK 117 (579)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEcchHHHHHHHHHHHHH
Confidence 11246899999999999999888765
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.70 E-value=5.7e-15 Score=164.49 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=81.5
Q ss_pred HHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCe
Q 004379 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGA 586 (758)
Q Consensus 508 i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~ 586 (758)
+.+++...++++|||+++.+..+.+++.+..... ....+... ...+..+.++.|++ ++..
T Consensus 292 l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~-------------~~~~lhg~~~~~~R~~~l~~F~~------g~~~ 352 (434)
T 2db3_A 292 LIEILSEQADGTIVFVETKRGADFLASFLSEKEF-------------PTTSIHGDRLQSQREQALRDFKN------GSMK 352 (434)
T ss_dssp HHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTC-------------CEEEESTTSCHHHHHHHHHHHHT------SSCS
T ss_pred HHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCC-------------CEEEEeCCCCHHHHHHHHHHHHc------CCCc
Confidence 3444555666799999999999999998875421 11222222 22346777888875 4578
Q ss_pred EEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHH
Q 004379 587 VFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666 (758)
Q Consensus 587 vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~ 666 (758)
||+|+ ..+++|||+++ ++.||..++|. + .....
T Consensus 353 vLvaT--~v~~rGlDi~~--v~~VI~~d~p~----~---------------------------------------~~~y~ 385 (434)
T 2db3_A 353 VLIAT--SVASRGLDIKN--IKHVINYDMPS----K---------------------------------------IDDYV 385 (434)
T ss_dssp EEEEC--GGGTSSCCCTT--CCEEEESSCCS----S---------------------------------------HHHHH
T ss_pred EEEEc--hhhhCCCCccc--CCEEEEECCCC----C---------------------------------------HHHHH
Confidence 99999 79999999998 78899988774 1 12345
Q ss_pred HhcCccccCCCCeEEEEEeec
Q 004379 667 QAVGRVIRHRHDYGAIIFCDE 687 (758)
Q Consensus 667 QaiGRlIR~~~D~g~villD~ 687 (758)
|++||.-|..+.--++.++++
T Consensus 386 qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 386 HRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp HHHTTSSCTTCCEEEEEEECT
T ss_pred HHhcccccCCCCCEEEEEEec
Confidence 999999999777556666664
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.69 E-value=2.4e-15 Score=165.47 Aligned_cols=73 Identities=25% Similarity=0.135 Sum_probs=58.1
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|+ |||.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------------------------- 87 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------------------------- 87 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTS---------------------------
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhcc---------------------------
Confidence 4566 8999999987765 4678999999999999999999886543211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|..++++++
T Consensus 88 -~~~~~lil~P~~~L~~q~~~~~~~~ 112 (400)
T 1s2m_A 88 -NKIQALIMVPTRELALQTSQVVRTL 112 (400)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCccEEEEcCCHHHHHHHHHHHHHH
Confidence 2357999999999999998887753
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=2.1e-15 Score=163.47 Aligned_cols=114 Identities=15% Similarity=0.130 Sum_probs=81.2
Q ss_pred HHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCe
Q 004379 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGA 586 (758)
Q Consensus 508 i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~ 586 (758)
+.+++...++.+|||++|.+..+.+++.+++... +...+..+. ..+..+.++.|++ ++..
T Consensus 230 l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------~~~~ 290 (367)
T 1hv8_A 230 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-------------KAGAIHGDLSQSQREKVIRLFKQ------KKIR 290 (367)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECSSSCHHHHHHHHHHHHT------TSSS
T ss_pred HHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC-------------CeEEeeCCCCHHHHHHHHHHHHc------CCCe
Confidence 3444555677899999999999999998875421 112222222 2345667777774 4578
Q ss_pred EEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHH
Q 004379 587 VFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVN 666 (758)
Q Consensus 587 vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~ 666 (758)
||+++ ..+++|+|+|+ ++.||..+.|.. ...+.
T Consensus 291 vlv~T--~~~~~Gid~~~--~~~Vi~~~~~~s-------------------------------------------~~~~~ 323 (367)
T 1hv8_A 291 ILIAT--DVMSRGIDVND--LNCVINYHLPQN-------------------------------------------PESYM 323 (367)
T ss_dssp EEEEC--TTHHHHCCCSC--CSEEEESSCCSC-------------------------------------------HHHHH
T ss_pred EEEEC--ChhhcCCCccc--CCEEEEecCCCC-------------------------------------------HHHhh
Confidence 99998 89999999998 789998887641 13457
Q ss_pred HhcCccccCCCCeEEEEEeec
Q 004379 667 QAVGRVIRHRHDYGAIIFCDE 687 (758)
Q Consensus 667 QaiGRlIR~~~D~g~villD~ 687 (758)
|++||+-|...+--+++++++
T Consensus 324 Q~~GR~~R~g~~g~~~~~~~~ 344 (367)
T 1hv8_A 324 HRIGRTGRAGKKGKAISIINR 344 (367)
T ss_dssp HHSTTTCCSSSCCEEEEEECT
T ss_pred hcccccccCCCccEEEEEEcH
Confidence 999999998766556666665
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.67 E-value=6.7e-15 Score=169.68 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=62.0
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCC
Q 004379 12 EFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (758)
Q Consensus 12 ~Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (758)
.++|. |+|.|.+.+..+.. .+++.+++.||||+|||++|++|++......+..
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~------------------------ 142 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD------------------------ 142 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS------------------------
T ss_pred HCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc------------------------
Confidence 36776 89999998877652 1468899999999999999999999877654320
Q ss_pred CCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 91 DSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 91 ~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
....++++|.++|..+..|+.+++++
T Consensus 143 ~~~~~~~lil~Ptr~La~Q~~~~~~~ 168 (563)
T 3i5x_A 143 SQYMVKAVIVAPTRDLALQIEAEVKK 168 (563)
T ss_dssp STTSCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEcCcHHHHHHHHHHHHH
Confidence 11235899999999999999988765
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.67 E-value=1.1e-14 Score=160.86 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|+ |+|.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------------------------- 103 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQV--------------------------- 103 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTS---------------------------
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhcc---------------------------
Confidence 5676 8999999887754 5688999999999999999999885432111
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.++++++
T Consensus 104 -~~~~~lil~Pt~~L~~q~~~~~~~~ 128 (410)
T 2j0s_A 104 -RETQALILAPTRELAVQIQKGLLAL 128 (410)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHH
Confidence 2358999999999999999888754
No 12
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.67 E-value=7.9e-15 Score=162.23 Aligned_cols=106 Identities=17% Similarity=0.146 Sum_probs=74.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 516 ~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
++.+|||+++.+..+.+++.+.+... ....+..+.. .+..+.++.|++ ++..||+++ .
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~-------------~~~~~h~~~~~~~r~~~~~~f~~------g~~~vlvaT--~ 334 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGY-------------ACTSIHGDRSQRDREEALHQFRS------GKSPILVAT--A 334 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHH------TSSCEEEEC--H
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCC-------------CeeEecCCCCHHHHHHHHHHHHc------CCCCEEEEC--C
Confidence 45699999999999999998875421 1122222222 346677888876 457899999 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcccc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIR 674 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR 674 (758)
.+++|||+|+ ++.||..++|. + ...+.|.+||+-|
T Consensus 335 ~~~~Gidip~--v~~Vi~~~~p~----s---------------------------------------~~~~~Qr~GR~gR 369 (417)
T 2i4i_A 335 VAARGLDISN--VKHVINFDLPS----D---------------------------------------IEEYVHRIGRTGR 369 (417)
T ss_dssp HHHTTSCCCC--EEEEEESSCCS----S---------------------------------------HHHHHHHHTTBCC
T ss_pred hhhcCCCccc--CCEEEEEcCCC----C---------------------------------------HHHHHHhcCcccc
Confidence 9999999998 78999988764 1 1345699999999
Q ss_pred CCCCeEEEEEeec
Q 004379 675 HRHDYGAIIFCDE 687 (758)
Q Consensus 675 ~~~D~g~villD~ 687 (758)
..+.--+++++++
T Consensus 370 ~g~~g~~~~~~~~ 382 (417)
T 2i4i_A 370 VGNLGLATSFFNE 382 (417)
T ss_dssp --CCEEEEEEECG
T ss_pred CCCCceEEEEEcc
Confidence 8766445555654
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.66 E-value=6.4e-15 Score=162.55 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=81.7
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||++|....+.+++.+..... ...++..+- ..+....++.|++ ++..||+|+
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------g~~~vlv~T-- 323 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGH-------------QVALLSGEMMVEQRAAVIERFRE------GKEKVLVTT-- 323 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTC-------------CCEEECTTSCHHHHHHHHHHHHT------TSCSEEEEC--
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCC-------------eEEEecCCCCHHHHHHHHHHHHC------CCCcEEEEc--
Confidence 457899999999999999998875421 122333222 2346677788875 456799998
Q ss_pred CccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCccc
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVI 673 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlI 673 (758)
..+++|||+|+ ++.||..++|..+..+. ....+.|.+||+-
T Consensus 324 ~~~~~Gidip~--~~~Vi~~~~p~~~~~~~-------------------------------------s~~~~~Qr~GR~g 364 (412)
T 3fht_A 324 NVCARGIDVEQ--VSVVINFDLPVDKDGNP-------------------------------------DNETYLHRIGRTG 364 (412)
T ss_dssp GGGTSSCCCTT--EEEEEESSCCBCSSSSB-------------------------------------CHHHHHHHHTTSS
T ss_pred CccccCCCccC--CCEEEEECCCCCCCCCc-------------------------------------chheeecccCccc
Confidence 89999999997 78899998886432110 0355689999999
Q ss_pred cCCCCeEEEEEeecc
Q 004379 674 RHRHDYGAIIFCDER 688 (758)
Q Consensus 674 R~~~D~g~villD~R 688 (758)
|...+--+++++|+.
T Consensus 365 R~g~~g~~~~~~~~~ 379 (412)
T 3fht_A 365 RFGKRGLAVNMVDSK 379 (412)
T ss_dssp CTTCCEEEEEEECSH
T ss_pred CCCCCceEEEEEcCh
Confidence 988776667777653
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.64 E-value=1.3e-14 Score=166.85 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=86.5
Q ss_pred EEEEecccCCCh--HhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHHHHHHHHHhhh
Q 004379 437 SIILTSGTLSPM--DSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARI 514 (758)
Q Consensus 437 ~vil~SaTL~p~--~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~~~ 514 (758)
.+|++|||+.+. ..+...|+++.+..+...+. ..++...+.+. ......... .|.+++..
T Consensus 202 ~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~--r~nl~~~v~~~------------~~~~~~~~~----~l~~~l~~ 263 (591)
T 2v1x_A 202 SLIGLTATATNHVLTDAQKILCIEKCFTFTASFN--RPNLYYEVRQK------------PSNTEDFIE----DIVKLING 263 (591)
T ss_dssp EEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCC--CTTEEEEEEEC------------CSSHHHHHH----HHHHHHTT
T ss_pred cEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCC--CcccEEEEEeC------------CCcHHHHHH----HHHHHHHH
Confidence 468889998763 45667777764433333222 22332222211 111122233 34444432
Q ss_pred --cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEE
Q 004379 515 --VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAV 591 (758)
Q Consensus 515 --~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v 591 (758)
.++.++||++|....+.+++.+..... .-..+-.+ ...+....++.|++ ++..||+|+
T Consensus 264 ~~~~~~~IVf~~sr~~~e~la~~L~~~g~-------------~~~~~h~~l~~~~R~~~~~~F~~------g~~~VlVAT 324 (591)
T 2v1x_A 264 RYKGQSGIIYCFSQKDSEQVTVSLQNLGI-------------HAGAYHANLEPEDKTTVHRKWSA------NEIQVVVAT 324 (591)
T ss_dssp TTTTCEEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TSSSEEEEC
T ss_pred hccCCCeEEEeCcHHHHHHHHHHHHHCCC-------------CEEEecCCCCHHHHHHHHHHHHc------CCCeEEEEe
Confidence 346799999999999999998875421 11122222 12346667788875 457899999
Q ss_pred ecCccccccccCCCCceEEEEEccCC
Q 004379 592 CRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 592 ~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
..|.+|||+|+ ++.||..++|.
T Consensus 325 --~a~~~GID~p~--V~~VI~~~~p~ 346 (591)
T 2v1x_A 325 --VAFGMGIDKPD--VRFVIHHSMSK 346 (591)
T ss_dssp --TTSCTTCCCSC--EEEEEESSCCS
T ss_pred --chhhcCCCccc--ccEEEEeCCCC
Confidence 89999999998 89999999886
No 15
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.63 E-value=9.5e-14 Score=153.65 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=59.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 12 EFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 12 ~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
.|+|+|+|.|.+.+..+. +++.+++.||||+|||++||.|++....
T Consensus 17 ~~~~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~------------------------------ 62 (414)
T 3oiy_A 17 KFGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR------------------------------ 62 (414)
T ss_dssp HHSSCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT------------------------------
T ss_pred hcCCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc------------------------------
Confidence 478999999999877654 5789999999999999999999776442
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|..++++++
T Consensus 63 -~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 63 -KGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp -TTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred -CCCEEEEEECCHHHHHHHHHHHHHH
Confidence 1258999999999999999888764
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.62 E-value=9.9e-15 Score=161.20 Aligned_cols=72 Identities=19% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|. |++.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 58 ~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------------------------- 106 (414)
T 3eiq_A 58 YGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDL--------------------------- 106 (414)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTS---------------------------
T ss_pred cCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcC---------------------------
Confidence 5665 7999999886654 5788999999999999999999886543211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhc
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..++++|.++|..+..|+.+++++
T Consensus 107 -~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 107 -KATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHH
T ss_pred -CceeEEEEeChHHHHHHHHHHHHH
Confidence 235799999999999999887765
No 17
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.62 E-value=2.4e-14 Score=162.83 Aligned_cols=164 Identities=15% Similarity=0.121 Sum_probs=102.1
Q ss_pred EEEEecccCCCh--HhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHHHHHHHHHhhh
Q 004379 437 SIILTSGTLSPM--DSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIARI 514 (758)
Q Consensus 437 ~vil~SaTL~p~--~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~~~ 514 (758)
.+|++|||+.+. ..+.+.+|+..+......+. ..++...+.+ ..+. .+.+.+.|.. .
T Consensus 176 ~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~--r~~l~~~v~~--------------~~~~--~~~l~~~l~~---~ 234 (523)
T 1oyw_A 176 PFMALTATADDTTRQDIVRLLGLNDPLIQISSFD--RPNIRYMLME--------------KFKP--LDQLMRYVQE---Q 234 (523)
T ss_dssp CEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCC--CTTEEEEEEE--------------CSSH--HHHHHHHHHH---T
T ss_pred CEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCC--CCceEEEEEe--------------CCCH--HHHHHHHHHh---c
Confidence 357888888774 45667788764432222211 2233222111 1111 2333333322 2
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||++|.+..+.+++.+..... +...+-.+ ...+....++.|++ ++..||+|+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~g~-------------~~~~~h~~l~~~~R~~~~~~f~~------g~~~vlVaT-- 293 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSKGI-------------SAAAYHAGLENNVRADVQEKFQR------DDLQIVVAT-- 293 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TSCSEEEEC--
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCC-------------CEEEecCCCCHHHHHHHHHHHHc------CCCeEEEEe--
Confidence 345799999999999999998876421 11122222 12345667777875 457899998
Q ss_pred CccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCccc
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVI 673 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlI 673 (758)
..+.+|||+|+ ++.||..++|. + +....|.+||.-
T Consensus 294 ~a~~~GiD~p~--v~~VI~~~~p~----s---------------------------------------~~~y~Qr~GRaG 328 (523)
T 1oyw_A 294 VAFGMGINKPN--VRFVVHFDIPR----N---------------------------------------IESYYQETGRAG 328 (523)
T ss_dssp TTSCTTTCCTT--CCEEEESSCCS----S---------------------------------------HHHHHHHHTTSC
T ss_pred chhhCCCCccC--ccEEEEECCCC----C---------------------------------------HHHHHHHhcccc
Confidence 79999999999 88999988774 1 234579999999
Q ss_pred cCCCCeEEEEEeec
Q 004379 674 RHRHDYGAIIFCDE 687 (758)
Q Consensus 674 R~~~D~g~villD~ 687 (758)
|...+--+++++++
T Consensus 329 R~g~~~~~~l~~~~ 342 (523)
T 1oyw_A 329 RDGLPAEAMLFYDP 342 (523)
T ss_dssp TTSSCEEEEEEECH
T ss_pred CCCCCceEEEEeCH
Confidence 98776666666654
No 18
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.62 E-value=2.4e-14 Score=153.28 Aligned_cols=68 Identities=24% Similarity=0.298 Sum_probs=56.1
Q ss_pred cCCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCC
Q 004379 12 EFPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (758)
Q Consensus 12 ~Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (758)
.++|. +||.|.+.+..+. +++.+++.||||+|||++|+.|++.. +
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~----~-------------------------- 56 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL----G-------------------------- 56 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH----T--------------------------
T ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh----c--------------------------
Confidence 46775 7999999887654 67899999999999999999997742 1
Q ss_pred CCCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 91 DSKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 91 ~~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
+++++.++|.++..|..+++++.
T Consensus 57 ----~~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 57 ----MKSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp ----CCEEEECSSHHHHHHHHHHHHHH
T ss_pred ----CCEEEEeCCHHHHHHHHHHHHHH
Confidence 47889999999999998888753
No 19
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.61 E-value=2.3e-15 Score=165.13 Aligned_cols=73 Identities=23% Similarity=0.228 Sum_probs=58.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +|||.|.+.+..+. +++.+++.||||+|||++|+.|++.+.....
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------------------------- 87 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------------------------- 87 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTC---------------------------
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccC---------------------------
Confidence 466 58999999887664 4688999999999999999999886543221
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.+++++.
T Consensus 88 -~~~~~lil~P~~~L~~q~~~~~~~~ 112 (394)
T 1fuu_A 88 -KAPQALMLAPTRELALQIQKVVMAL 112 (394)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 2368999999999999998887653
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.1e-14 Score=165.58 Aligned_cols=114 Identities=13% Similarity=0.183 Sum_probs=65.5
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||+++....+.++..+.+... +...+..+ ...+....++.|++ ++..||+|+
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~~~~-------------~v~~~hg~~~~~~R~~il~~f~~------g~~~VLVaT-- 414 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTADGH-------------TVACLTGNLEGAQRDAIMDSFRV------GTSKVLVTT-- 414 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTTTTC-------------CCCEEC-----CTTGGGTHHHHS------SSCCCCEEC--
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhCCC-------------cEEEEeCCCCHHHHHHHHHHHHC------CCCeEEEeC--
Confidence 357899999999999999988875421 12222221 12345567788864 456799999
Q ss_pred CccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCccc
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVI 673 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlI 673 (758)
..+++|||+|+ ++.||..+.|.-...+ ..+..+.|.+||+-
T Consensus 415 ~~l~~GiDip~--v~~VI~~~~p~~~~~~-------------------------------------~s~~~~~Qr~GRag 455 (508)
T 3fho_A 415 NVIARGIDVSQ--VNLVVNYDMPLDQAGR-------------------------------------PDPQTYLHRIGRTG 455 (508)
T ss_dssp C-----CCCTT--CCEEEC----CC------------------------------------------CTHHHHHTTSCCC
T ss_pred ChhhcCCCccC--CCEEEEECCCCcccCC-------------------------------------CCHHHHHHHhhhcC
Confidence 79999999998 7889988877532100 01355679999999
Q ss_pred cCCCCeEEEEEeecc
Q 004379 674 RHRHDYGAIIFCDER 688 (758)
Q Consensus 674 R~~~D~g~villD~R 688 (758)
|...+--+++++++.
T Consensus 456 R~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 456 RFGRVGVSINFVHDK 470 (508)
T ss_dssp -----CEEEEEECTT
T ss_pred CCCCCcEEEEEEeCh
Confidence 988776666677654
No 21
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.54 E-value=6.6e-13 Score=149.12 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhh-hcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCC--------C-CCCChHHHH
Q 004379 502 QELGNTIVNIAR-IVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEP--------R-QSSLFPLAI 571 (758)
Q Consensus 502 ~~l~~~i~~~~~-~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~--------~-~~~~~~~~i 571 (758)
..+.+.|.+... ..++.+|||+++...++.+++.+..... +...+.+ + ...+..+.+
T Consensus 346 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-------------~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 346 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-------------KAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-------------CEEEECCSSCC-------CCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-------------CcEEEeccccccccccCCHHHHHHHH
Confidence 334444444432 2467899999999999999998876421 1122222 1 234577888
Q ss_pred HHHHHHhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccC
Q 004379 572 EDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMP 616 (758)
Q Consensus 572 ~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glP 616 (758)
+.|++ ++..||+++ ..++||||+++ ++.||..+.|
T Consensus 413 ~~F~~------~~~~vLv~T--~~~~~Gldl~~--~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 DEFAR------GEFNVLVAT--SVGEEGLDVPE--VDLVVFYEPV 447 (494)
T ss_dssp HHHHH------TSCSEEEEC--GGGGGGGGSTT--CCEEEESSCC
T ss_pred HHHhc------CCceEEEEC--CccccCCCchh--CCEEEEeCCC
Confidence 99986 456799998 79999999998 7899988766
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3e-12 Score=155.46 Aligned_cols=72 Identities=22% Similarity=0.224 Sum_probs=60.3
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 10 DVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 10 ~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
.-.|||++++.|.+.+..+ .+++.+++.||||+|||++|+.|++.....
T Consensus 80 ~~~~~f~L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~--------------------------- 128 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------------------------- 128 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHT---------------------------
T ss_pred HHhCCCCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhcc---------------------------
Confidence 4568999999999988764 567899999999999999999887765432
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|+++|..+..|...++++
T Consensus 129 ----g~rvL~l~PtkaLa~Q~~~~l~~ 151 (1010)
T 2xgj_A 129 ----KQRVIYTSPIKALSNQKYRELLA 151 (1010)
T ss_dssp ----TCEEEEEESSHHHHHHHHHHHHH
T ss_pred ----CCeEEEECChHHHHHHHHHHHHH
Confidence 25899999999999999888764
No 23
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.47 E-value=6.4e-12 Score=154.80 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=65.5
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHhcCC--ceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCC
Q 004379 10 DVEFPFEAYDCQLVYMEKVIQSLQNKC--NALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSS 87 (758)
Q Consensus 10 ~~~Fpf~~r~~Q~~~~~~i~~al~~~~--~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (758)
.-.|||+++|.|.+.+..+.+.+.+++ .+++.||||+|||++++.+++.....
T Consensus 597 ~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~------------------------- 651 (1151)
T 2eyq_A 597 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN------------------------- 651 (1151)
T ss_dssp HHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-------------------------
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-------------------------
Confidence 346999999999999999999998887 89999999999999999888764321
Q ss_pred CCCCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 88 QSGDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 88 ~~~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+++++.++|..+..|..+++++
T Consensus 652 ------g~~vlvlvPt~~La~Q~~~~~~~ 674 (1151)
T 2eyq_A 652 ------HKQVAVLVPTTLLAQQHYDNFRD 674 (1151)
T ss_dssp ------TCEEEEECSSHHHHHHHHHHHHH
T ss_pred ------CCeEEEEechHHHHHHHHHHHHH
Confidence 24899999999999999988864
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.46 E-value=3.1e-12 Score=156.62 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=62.3
Q ss_pred CeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCC
Q 004379 8 GIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSS 87 (758)
Q Consensus 8 ~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (758)
.+.-.|||++++.|.+.+.. +.+++.+++.||||+|||++|+.|++.....
T Consensus 176 ~~~~~~~f~ltp~Q~~AI~~----i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~------------------------- 226 (1108)
T 3l9o_A 176 NEARTYPFTLDPFQDTAISC----IDRGESVLVSAHTSAGKTVVAEYAIAQSLKN------------------------- 226 (1108)
T ss_dssp SCSSCCSSCCCHHHHHHHHH----HTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHhCCCCCCHHHHHHHHH----HHcCCCEEEECCCCCChHHHHHHHHHHHHhc-------------------------
Confidence 45667999999999987765 4778999999999999999999998865532
Q ss_pred CCCCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 88 QSGDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 88 ~~~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|+++|..+..|..+++++
T Consensus 227 ------g~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 227 ------KQRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp ------TCEEEEEESSHHHHHHHHHHHHH
T ss_pred ------CCeEEEEcCcHHHHHHHHHHHHH
Confidence 25899999999999999888765
No 25
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=154.71 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=0.0
Q ss_pred CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeC-CCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVE-PRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 516 ~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e-~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.+.++||++|....+.++..+...... ..++. .-...+...+++.|++ ++..||+|+ .
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~~~~-------------v~~lh~~~~~~~R~~~~~~f~~------g~~~iLv~T--~ 391 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKEGHQ-------------VALLSGEMMVEQRAAVIERFRE------GKEKVLVTT--N 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhCCcc-------------EEEecCCCCHHHHHHHHHHHHc------CCCcEEEEc--c
Confidence 467999999999999999888754211 11111 1122345567788875 456799999 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcccc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIR 674 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR 674 (758)
.+++|||+|+ ++.||..++|..... ...+..+.|.+||.-|
T Consensus 392 ~~~~GlDip~--v~~VI~~d~p~~~~~-------------------------------------~~s~~~~~Qr~GRagR 432 (479)
T 3fmp_B 392 VCARGIDVEQ--VSVVINFDLPVDKDG-------------------------------------NPDNETYLHRIGRTGR 432 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCcccc--CCEEEEecCCCCCcc-------------------------------------CCCHHHHHHHhccccc
Confidence 9999999998 677887777653211 0113556899999999
Q ss_pred CCCCeEEEEEeecc
Q 004379 675 HRHDYGAIIFCDER 688 (758)
Q Consensus 675 ~~~D~g~villD~R 688 (758)
....--+++++++.
T Consensus 433 ~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 433 FGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------
T ss_pred CCCCceEEEEEcCc
Confidence 77664455666653
No 26
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.44 E-value=4.5e-12 Score=150.16 Aligned_cols=70 Identities=23% Similarity=0.218 Sum_probs=57.6
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +++|.|.+.+..+ +.+++++++.||||+|||+++..|++......+
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--------------------------- 75 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG--------------------------- 75 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC---------------------------
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC---------------------------
Confidence 678 5899999987752 456899999999999999999999886544322
Q ss_pred CCCCeEEEeCCccchHHHHHHHhh
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELK 115 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLk 115 (758)
.+++|.++|..+..|..++++
T Consensus 76 ---~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 76 ---GKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp ---SEEEEECSCHHHHHHHHHHHG
T ss_pred ---CeEEEEeCcHHHHHHHHHHHH
Confidence 489999999999999888774
No 27
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.43 E-value=1.8e-12 Score=157.29 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=60.2
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCC
Q 004379 9 IDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQ 88 (758)
Q Consensus 9 i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (758)
..-.|||++++.|.+.+.. +.+++.+++.||||+|||++|+.|++.....
T Consensus 32 ~~~~~~f~l~~~Q~~aI~~----il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-------------------------- 81 (997)
T 4a4z_A 32 PARSWPFELDTFQKEAVYH----LEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-------------------------- 81 (997)
T ss_dssp CSCCCSSCCCHHHHHHHHH----HHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------------------------
T ss_pred HHHhCCCCCCHHHHHHHHH----HHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------------------------
Confidence 3457999999999987654 4567899999999999999999887654331
Q ss_pred CCCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 89 SGDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 89 ~~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|.++|..+..|..+++++
T Consensus 82 -----g~~vlvl~PtraLa~Q~~~~l~~ 104 (997)
T 4a4z_A 82 -----MTKTIYTSPIKALSNQKFRDFKE 104 (997)
T ss_dssp -----TCEEEEEESCGGGHHHHHHHHHT
T ss_pred -----CCeEEEEeCCHHHHHHHHHHHHH
Confidence 25899999999999999988875
No 28
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.41 E-value=7.2e-12 Score=148.17 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
+|++||.|.+.+..+.+ ++.+++.||||+|||++|+.|++........ ...
T Consensus 5 ~~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~-------------------------~~~ 55 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKK-------------------------ASE 55 (699)
T ss_dssp --CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHH-------------------------HTC
T ss_pred CCCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccc-------------------------cCC
Confidence 58899999998877654 7889999999999999999999876654311 001
Q ss_pred CCeEEEeCCccchHHHH-HHHhhcC
Q 004379 94 LPTILYTSRTHSQLRQV-IQELKTS 117 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~-i~eLkkl 117 (758)
..+++|.++|.++..|. .+++++.
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHH
Confidence 24688888999999999 8887753
No 29
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.40 E-value=7.4e-12 Score=142.36 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhcc
Q 004379 502 QELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKD 580 (758)
Q Consensus 502 ~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~ 580 (758)
..+.+.+.+... .+++.+|+|.+.+..+.+++.+.+... +..++..+.. .+..++++.|++
T Consensus 334 ~~l~~~l~~~~~-~~~~~~ivf~~~~~~~~l~~~L~~~~~-------------~v~~~~g~~~~~~r~~i~~~f~~---- 395 (510)
T 2oca_A 334 KWIAKLAIKLAQ-KDENAFVMFKHVSHGKAIFDLIKNEYD-------------KVYYVSGEVDTETRNIMKTLAEN---- 395 (510)
T ss_dssp HHHHHHHHHHHT-TTCEEEEEESSHHHHHHHHHHHHTTCS-------------SEEEESSSTTHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHh-cCCCeEEEEecHHHHHHHHHHHHHcCC-------------CeEEEECCCCHHHHHHHHHHHhC----
Confidence 335555555544 467788899999999888888775421 1122222222 345677888875
Q ss_pred CCCCCeEEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHH
Q 004379 581 TSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQ 660 (758)
Q Consensus 581 ~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~ 660 (758)
++..||+|+. ..+.+|||+|+ ++.||+.+.|.. +
T Consensus 396 --g~~~vLv~T~-~~~~~GiDip~--v~~vi~~~~~~s-~---------------------------------------- 429 (510)
T 2oca_A 396 --GKGIIIVASY-GVFSTGISVKN--LHHVVLAHGVKS-K---------------------------------------- 429 (510)
T ss_dssp --CCSCEEEEEH-HHHHHSCCCCS--EEEEEESSCCCS-C----------------------------------------
T ss_pred --CCCCEEEEEc-Chhhccccccc--CcEEEEeCCCCC-H----------------------------------------
Confidence 4556888873 48899999998 899999987742 1
Q ss_pred HHHHHHHhcCccccCCCCeEEEEEee
Q 004379 661 ASRAVNQAVGRVIRHRHDYGAIIFCD 686 (758)
Q Consensus 661 a~~~~~QaiGRlIR~~~D~g~villD 686 (758)
..+.|++||+-|...+...+++.|
T Consensus 430 --~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 430 --IIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp --CHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred --HHHHHHHhcccccCCCCceEEEEE
Confidence 235699999999887754666666
No 30
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.40 E-value=2.4e-11 Score=140.62 Aligned_cols=129 Identities=11% Similarity=0.069 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhc--CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHh-cCCCCeeCCCCCCC-hHHHHHHHHHH
Q 004379 502 QELGNTIVNIARIV--PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERIC-KHKKPVVEPRQSSL-FPLAIEDYMAK 577 (758)
Q Consensus 502 ~~l~~~i~~~~~~~--~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~-~~k~~~~e~~~~~~-~~~~i~~~~~~ 577 (758)
..+++.|.+.+... .+.+|||+++....+.+++.+.+.... ... ....+..-..+..+ ..+++++|++
T Consensus 423 ~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~-------~~~~~~~~~~~i~g~~~~~r~~~l~~F~~- 494 (590)
T 3h1t_A 423 DAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD-------LSRKHPDYVARVTSEEGKIGKGHLSRFQE- 494 (590)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH-------HHTTCTTSEEECSSTTHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh-------hhccCCCeEEEEeCCChHHHHHHHHHHhC-
Confidence 44555565555432 357999999999999999988754210 000 11112222222222 5677788874
Q ss_pred hccCC-CCCeEEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchh
Q 004379 578 LKDTS-TSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDW 656 (758)
Q Consensus 578 i~~~~-~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~ 656 (758)
+. .-..||+++ ..+.+|||+|+ +.+||+.+.|. +
T Consensus 495 ---~~~~~~~ilvtt--~~l~~GiDip~--v~~Vi~~~~~~----s---------------------------------- 529 (590)
T 3h1t_A 495 ---LETSTPVILTTS--QLLTTGVDAPT--CKNVVLARVVN----S---------------------------------- 529 (590)
T ss_dssp ---TTCCCCCEEEES--STTTTTCCCTT--EEEEEEESCCC----C----------------------------------
T ss_pred ---CCCCCCEEEEEC--ChhhcCccchh--eeEEEEEecCC----C----------------------------------
Confidence 11 123478777 78899999998 88999887654 1
Q ss_pred HHHHHHHHHHHhcCccccCCC--CeEEEEEeecc
Q 004379 657 YNQQASRAVNQAVGRVIRHRH--DYGAIIFCDER 688 (758)
Q Consensus 657 y~~~a~~~~~QaiGRlIR~~~--D~g~villD~R 688 (758)
...+.|++||+-|... +...++|+|-.
T Consensus 530 -----~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 530 -----MSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp -----HHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred -----hHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 2456799999999876 67778888864
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.36 E-value=1.8e-11 Score=144.72 Aligned_cols=69 Identities=26% Similarity=0.214 Sum_probs=55.3
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +++|.|.+.+.. +.+++++++.||||+|||++++.|++..... +
T Consensus 21 ~g~~~l~~~Q~~~i~~----i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~--------------------------- 68 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEK----VFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-G--------------------------- 68 (702)
T ss_dssp C---CCCCCCHHHHHH----HTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-T---------------------------
T ss_pred CCCCCCCHHHHHHHHH----HhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-C---------------------------
Confidence 677 579999988777 4468999999999999999999998865432 1
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhc
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+++|.++|..+..|..+++++
T Consensus 69 ---~~~l~i~P~r~La~q~~~~~~~ 90 (702)
T 2p6r_A 69 ---GKSLYVVPLRALAGEKYESFKK 90 (702)
T ss_dssp ---CCEEEEESSHHHHHHHHHHHTT
T ss_pred ---CcEEEEeCcHHHHHHHHHHHHH
Confidence 4799999999999999887753
No 32
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.33 E-value=5.8e-11 Score=140.69 Aligned_cols=71 Identities=23% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +++|.|.+.+..+ +.+++++++.||||+|||++++.|++......+
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~--------------------------- 68 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQG--------------------------- 68 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHC---------------------------
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC---------------------------
Confidence 678 5899999987652 456899999999999999999999886554333
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhc
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+++|.++|..+..|..+++++
T Consensus 69 ---~~~l~i~P~raLa~q~~~~~~~ 90 (720)
T 2zj8_A 69 ---GKAVYIVPLKALAEEKFQEFQD 90 (720)
T ss_dssp ---SEEEEECSSGGGHHHHHHHTGG
T ss_pred ---CEEEEEcCcHHHHHHHHHHHHH
Confidence 4899999999999999887753
No 33
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.31 E-value=1.4e-10 Score=147.21 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=55.7
Q ss_pred CC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 15 FE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 15 f~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
|+ ..|.|.+....+ +.+++++++.||||+|||+++.+|.+......+
T Consensus 924 f~~fnpiQ~q~~~~l---~~~~~nvlv~APTGSGKTliaelail~~l~~~~----------------------------- 971 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTV---YNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS----------------------------- 971 (1724)
T ss_dssp CSBCCHHHHHHHHHH---HSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-----------------------------
T ss_pred CCCCCHHHHHHHHHH---hcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-----------------------------
Confidence 44 578999876555 357789999999999999999999886554432
Q ss_pred CCeEEEeCCccchHHHHHHHhhc
Q 004379 94 LPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..+++|.++|+++..|...++++
T Consensus 972 ~~kavyi~P~raLa~q~~~~~~~ 994 (1724)
T 4f92_B 972 EGRCVYITPMEALAEQVYMDWYE 994 (1724)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcChHHHHHHHHHHHHH
Confidence 24799999999999998887753
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.27 E-value=1.5e-10 Score=141.72 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 12 EFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 12 ~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
.++|+| +.|.+.+..+. +|+.+++.||||+|||+ |++|++......
T Consensus 53 ~~g~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~---------------------------- 98 (1054)
T 1gku_B 53 CVGEPR-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK---------------------------- 98 (1054)
T ss_dssp TTCSCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT----------------------------
T ss_pred hcCCCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc----------------------------
Confidence 467778 99999887764 57899999999999998 888988765432
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhc
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|.++|..+..|+.+.+++
T Consensus 99 --~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 99 --GKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp --SCCEEEEESCHHHHHHHHHHHHH
T ss_pred --CCeEEEEeccHHHHHHHHHHHHH
Confidence 25799999999999999887765
No 35
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.25 E-value=1.9e-11 Score=124.63 Aligned_cols=77 Identities=19% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|+ |++.|.+.+..+. +|+.+++.||||+|||++|+.|++........ ...
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~-----------------------~~~ 99 (242)
T 3fe2_A 47 QNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF-----------------------LER 99 (242)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC-----------------------CCT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccc-----------------------ccc
Confidence 5676 8999999887654 67899999999999999999999987654321 001
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhc
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
...++++|.++|..+..|+.+.+++
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 2346899999999999998877654
No 36
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.25 E-value=1.8e-10 Score=141.10 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=59.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 12 EFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 12 ~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
.++|+|+|.|.+.+..+. +|+.+++.||||+|||+++|.|++....
T Consensus 74 ~~gf~pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~------------------------------ 119 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR------------------------------ 119 (1104)
T ss_dssp HSSSCCCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT------------------------------
T ss_pred hcCCCCCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh------------------------------
Confidence 478999999998877654 4789999999999999999988775442
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.+.++++
T Consensus 120 -~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 120 -KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp -TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred -cCCeEEEEechHHHHHHHHHHHHHh
Confidence 2258999999999999999988864
No 37
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.24 E-value=3.7e-11 Score=121.94 Aligned_cols=77 Identities=21% Similarity=0.150 Sum_probs=59.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
+.|. |++.|.+.+..+ .+++.+++.||||+|||++|+.|++.+....... .
T Consensus 43 ~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~------------------------~ 94 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWT------------------------S 94 (236)
T ss_dssp TTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCC------------------------G
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhccc------------------------c
Confidence 4554 799999887665 4678999999999999999999999776542210 0
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...++++|.++|..+..|+.+++++.
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 12368999999999999998887753
No 38
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.23 E-value=3e-11 Score=121.99 Aligned_cols=79 Identities=19% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +|++.|.+.+..+ .+++.+++.||||+|||++|+.|++.+....... ...
T Consensus 38 ~g~~~~~~~Q~~~i~~~----~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~----------------------~~~ 91 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPII----LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS----------------------REQ 91 (228)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHC------------------------------
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhccch----------------------hhc
Confidence 456 5899999987655 4678999999999999999999998765432110 001
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...++++|.++|..+..|+.+++++.
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 13468999999999999998888764
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.23 E-value=4.5e-10 Score=142.61 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=59.6
Q ss_pred CC-CC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCC
Q 004379 13 FP-FE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (758)
Q Consensus 13 Fp-f~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (758)
|| |+ +.+.|.+... .++.+++++++.||||+|||+++.+|.+....+..... ...
T Consensus 74 f~g~~~ln~iQs~~~~---~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~--------------------~~~ 130 (1724)
T 4f92_B 74 FEGFKTLNRIQSKLYR---AALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMD--------------------GTI 130 (1724)
T ss_dssp CTTCSBCCHHHHHTHH---HHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTT--------------------SSC
T ss_pred cCCCCCCCHHHHHHHH---HHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhcccc--------------------ccc
Confidence 54 66 4689988554 35778999999999999999999999887655432100 001
Q ss_pred CCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 91 DSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 91 ~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..+..+++|.++|+++..|...++++
T Consensus 131 ~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 131 NVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp CTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 12346899999999999998887754
No 40
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.22 E-value=4.1e-11 Score=118.79 Aligned_cols=73 Identities=18% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|. ||+.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 21 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------------------------- 69 (206)
T 1vec_A 21 MGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKK--------------------------- 69 (206)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTS---------------------------
T ss_pred CCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccC---------------------------
Confidence 5674 8999999877654 5689999999999999999999886542211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.+++++.
T Consensus 70 -~~~~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 70 -DNIQAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp -CSCCEEEECSCHHHHHHHHHHHHHH
T ss_pred -CCeeEEEEeCcHHHHHHHHHHHHHH
Confidence 2367999999999999988877653
No 41
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.21 E-value=2.9e-11 Score=121.62 Aligned_cols=73 Identities=23% Similarity=0.228 Sum_probs=58.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|. ||+.|.+.+..+. +++.+++.||||+|||++|++|++.+.....
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------------------------- 80 (224)
T 1qde_A 32 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------------------------- 80 (224)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTC---------------------------
T ss_pred CCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccC---------------------------
Confidence 5664 8999998877654 5688999999999999999999887553221
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.++++++
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 81 -KAPQALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCceEEEEECCHHHHHHHHHHHHHH
Confidence 2368999999999999998887754
No 42
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.20 E-value=4.3e-11 Score=121.08 Aligned_cols=73 Identities=19% Similarity=0.117 Sum_probs=58.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|. |++.|.+.+..+ .+++.+++.||||+|||++|+.|++......+
T Consensus 42 ~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------------------------- 90 (230)
T 2oxc_A 42 AGFERPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--------------------------- 90 (230)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS---------------------------
T ss_pred CCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---------------------------
Confidence 5676 899999988764 45789999999999999999999886442211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.+++++.
T Consensus 91 -~~~~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 91 -LSTQILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCceEEEEeCCHHHHHHHHHHHHHH
Confidence 2368999999999999999888754
No 43
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.20 E-value=5.3e-11 Score=118.03 Aligned_cols=76 Identities=20% Similarity=0.135 Sum_probs=59.1
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +|++.|.+.+..+ .+++.+++.||||+|||++|+.|++.+...... .
T Consensus 19 ~~~~~~~~~Q~~~i~~~----~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-------------------------~ 69 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLA----LEGKDLIGQARTGTGKTLAFALPIAERLAPSQE-------------------------R 69 (207)
T ss_dssp TTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC-------------------------T
T ss_pred cCCCCCCHHHHHHHHHH----cCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-------------------------c
Confidence 456 5899999988765 457889999999999999999998865432110 1
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...++++|.++|.++..|+.+++++.
T Consensus 70 ~~~~~~lil~P~~~L~~q~~~~~~~~ 95 (207)
T 2gxq_A 70 GRKPRALVLTPTRELALQVASELTAV 95 (207)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHH
Confidence 13468999999999999999888764
No 44
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.19 E-value=6.3e-11 Score=121.41 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=59.1
Q ss_pred cCCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCC
Q 004379 12 EFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (758)
Q Consensus 12 ~Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (758)
.++| +|++.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-------------------------- 109 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETP-------------------------- 109 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--------------------------
T ss_pred HcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--------------------------
Confidence 3566 58999999877654 6789999999999999999999987655432
Q ss_pred CCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 91 DSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 91 ~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..++++|.++|..+..|+.+++++
T Consensus 110 --~~~~~lil~Ptr~L~~q~~~~~~~ 133 (249)
T 3ber_A 110 --QRLFALVLTPTRELAFQISEQFEA 133 (249)
T ss_dssp --CSSCEEEECSSHHHHHHHHHHHHH
T ss_pred --CCceEEEEeCCHHHHHHHHHHHHH
Confidence 235799999999999999887765
No 45
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.18 E-value=5e-11 Score=121.70 Aligned_cols=74 Identities=26% Similarity=0.232 Sum_probs=59.4
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
.+|. |++.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------------------------- 95 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPA--------------------------- 95 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCC---------------------------
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcc---------------------------
Confidence 4666 8999999886654 5788999999999999999999987654321
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...++++|.++|..+..|+.+++++.
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 12368999999999999999888764
No 46
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.18 E-value=1.1e-10 Score=119.87 Aligned_cols=82 Identities=15% Similarity=0.170 Sum_probs=59.9
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
+.|. |++.|.+.+..+. +++.+++.||||+|||++|+.|++......+... .....
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~-------------------~~~~~ 97 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQ-------------------QRYSK 97 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-------------------------C
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhcccc-------------------ccccc
Confidence 4554 8999999887654 5688999999999999999999997765432100 00001
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...++++|.++|..+..|+.+++++.
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~ 123 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKF 123 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHH
Confidence 12368999999999999998887653
No 47
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.16 E-value=7.7e-11 Score=118.17 Aligned_cols=73 Identities=22% Similarity=0.239 Sum_probs=58.5
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|+ |++.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------------------------- 80 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------------------------- 80 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCT---------------------------
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccC---------------------------
Confidence 5676 8999999887665 4678999999999999999999886532211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.+++++.
T Consensus 81 -~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 81 -GQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp -TCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred -CCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 2358999999999999998887653
No 48
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.13 E-value=7.7e-11 Score=118.16 Aligned_cols=73 Identities=21% Similarity=0.150 Sum_probs=58.2
Q ss_pred CCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++| +|++.|.+.+..+. +++.+++.||||+|||++|+.|++......+
T Consensus 22 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------------------------- 70 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------------------------- 70 (219)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTS---------------------------
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCc---------------------------
Confidence 455 48999999987665 4688999999999999999999886543211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.+++++.
T Consensus 71 -~~~~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 71 -AEVQAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCceEEEEcCcHHHHHHHHHHHHHH
Confidence 2368999999999999998887653
No 49
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.13 E-value=7.8e-11 Score=119.75 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|. |++.|.+.+..+. +++.+++.||||+|||++|+.|++.......
T Consensus 48 ~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--------------------------- 96 (237)
T 3bor_A 48 YGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEF--------------------------- 96 (237)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTS---------------------------
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcC---------------------------
Confidence 5676 8999998877654 5688999999999999999999886543211
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..++++|.++|..+..|+.++++++
T Consensus 97 -~~~~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 97 -KETQALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp -CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCceEEEEECcHHHHHHHHHHHHHH
Confidence 2358999999999999999888764
No 50
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.11 E-value=4.2e-10 Score=116.17 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=60.3
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
++|. |++.|.+++..+.+ ++.+++.||||+|||++|++|++......+.. .
T Consensus 72 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~------------------------~ 123 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM------------------------P 123 (262)
T ss_dssp TTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC------------------------G
T ss_pred CCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhcccc------------------------c
Confidence 4565 89999998877654 57899999999999999999999766543210 0
Q ss_pred CCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 92 SKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...++++|.++|..+..|..+++++.
T Consensus 124 ~~~~~~lil~Pt~~La~q~~~~~~~~ 149 (262)
T 3ly5_A 124 RNGTGVLILSPTRELAMQTFGVLKEL 149 (262)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 12357999999999999999888764
No 51
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.10 E-value=7.6e-10 Score=123.48 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=75.9
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.+|||++|....+.+++.+++... .+..- .+....+.++.|++ ++..||+|+ .
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~--------------~~~~l--h~~~~~~~~~~f~~------g~~~vLVaT--~ 242 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGK--------------RVIQL--SRKTFDTEYPKTKL------TDWDFVVTT--D 242 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC--------------CEEEE--CTTTHHHHGGGGGS------SCCSEEEEC--G
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCC--------------eEEEC--CHHHHHHHHHhhcc------CCceEEEEC--C
Confidence 477899999999999999998876421 11111 12234556666653 467899999 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcccc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIR 674 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR 674 (758)
-+.+|||+|+ +.||-.|+++.+..| | + +.+ .+- ...-.|.....+.|.+||.=|
T Consensus 243 v~~~GiDip~---~~VI~~~~~~~~~~d--------~-~--~~~-----------~l~-~~~~~p~s~~~y~Qr~GRaGR 296 (451)
T 2jlq_A 243 ISEMGANFRA---GRVIDPRRCLKPVIL--------T-D--GPE-----------RVI-LAGPIPVTPASAAQRRGRIGR 296 (451)
T ss_dssp GGGSSCCCCC---SEEEECCEEEEEEEE--------C-S--SSC-----------EEE-EEEEEECCHHHHHHHHTTSSC
T ss_pred HHHhCcCCCC---CEEEECCCccccccc--------c-c--ccc-----------eee-ecccccCCHHHHHHhccccCC
Confidence 9999999998 788877654321100 0 0 000 000 000012235668899999999
Q ss_pred CCCCeEEEEEee
Q 004379 675 HRHDYGAIIFCD 686 (758)
Q Consensus 675 ~~~D~g~villD 686 (758)
...+.|..+++.
T Consensus 297 ~g~~~g~~~~~~ 308 (451)
T 2jlq_A 297 NPAQEDDQYVFS 308 (451)
T ss_dssp CTTCCCEEEEEC
T ss_pred CCCCCccEEEEe
Confidence 988555556654
No 52
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.09 E-value=1.3e-10 Score=115.70 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=55.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCC
Q 004379 12 EFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGD 91 (758)
Q Consensus 12 ~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (758)
.+.+++|+.|.+.+..+. +++.+++.||||+|||++++.+++........ .
T Consensus 29 ~~~~~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~-------------------------~ 79 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK-------------------------A 79 (216)
T ss_dssp SCCCCCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH-------------------------T
T ss_pred cCCCCchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc-------------------------c
Confidence 345789999999987765 46889999999999999999998876554321 0
Q ss_pred CCCCeEEEeCCccchHHH-HHHHhh
Q 004379 92 SKLPTILYTSRTHSQLRQ-VIQELK 115 (758)
Q Consensus 92 ~~~~kIi~~trT~sql~Q-~i~eLk 115 (758)
...++++|.++|..+..| +.++++
T Consensus 80 ~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 80 SEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp TCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCcEEEEECHHHHHHHHHHHHHH
Confidence 012578888889999888 434443
No 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.03 E-value=1.1e-08 Score=113.20 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=78.3
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.+|.++||+++.+..+.+++.+++... +...+-. .+..+.++.|++ ++-.||+|+ .
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------~v~~lhg---~~r~~~~~~f~~------g~~~vLVaT--~ 225 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGK-------------KVLYLNR---KTFESEYPKCKS------EKWDFVITT--D 225 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTC-------------CEEEEST---TTHHHHTTHHHH------SCCSEEEEC--G
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCC-------------eEEEeCC---ccHHHHHHhhcC------CCCeEEEEC--c
Confidence 478899999999999999998875421 1122222 246778889987 467899999 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcccc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIR 674 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR 674 (758)
-+.+|||+| ...||..|.++.+.-| +. . + .+ .+-.|.....+.|.+||+=|
T Consensus 226 v~e~GiDip---~~~VI~~g~~~~~v~d----------~~--~--~---------vi---~~~~p~~~~~~~Qr~GR~GR 276 (431)
T 2v6i_A 226 ISEMGANFK---ADRVIDPRKTIKPILL----------DG--R--V---------SM---QGPIAITPASAAQRRGRIGR 276 (431)
T ss_dssp GGGTSCCCC---CSEEEECCEEEEEEEE----------TT--E--E---------EE---EEEEECCHHHHHHHHTTSSC
T ss_pred hHHcCcccC---CcEEEecCccccceec----------cc--c--e---------ee---cccccCCHHHHHHhhhccCC
Confidence 999999998 4577766655521111 00 0 0 00 00112235667899999999
Q ss_pred CCCCeEEEEEee
Q 004379 675 HRHDYGAIIFCD 686 (758)
Q Consensus 675 ~~~D~g~villD 686 (758)
.....|.+++++
T Consensus 277 ~g~~~~~~~~~~ 288 (431)
T 2v6i_A 277 NPEKLGDIYAYS 288 (431)
T ss_dssp CTTCCCCEEEEC
T ss_pred CCCCCCeEEEEc
Confidence 986666666665
No 54
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.01 E-value=9.7e-10 Score=125.80 Aligned_cols=73 Identities=18% Similarity=0.214 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
||+|||.|.+.+..+. +++.+++.||||+|||++|+.|++........ ..
T Consensus 2 ~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------------------~~ 51 (555)
T 3tbk_A 2 PLKPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPC--------------------------GQ 51 (555)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------------------SC
T ss_pred CCCCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------------------------CC
Confidence 7899999999887664 57889999999999999999998876654321 12
Q ss_pred CCeEEEeCCccchHHHHHHHhhc
Q 004379 94 LPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|.++|..+..|..+++++
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~ 74 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSR 74 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH
Confidence 36799999999999999988765
No 55
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=98.99 E-value=7.2e-10 Score=116.70 Aligned_cols=73 Identities=23% Similarity=0.205 Sum_probs=56.6
Q ss_pred CCCC-CCHHHHHHHHHHHHHHhcC--CceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 13 FPFE-AYDCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 13 Fpf~-~r~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
+.|. |++.|.+.+..+ .++ +.+++.||||||||++|++|++......+
T Consensus 110 ~g~~~pt~iQ~~ai~~i----l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~------------------------- 160 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLM----LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN------------------------- 160 (300)
T ss_dssp TTCCSCCHHHHHHHHHH----TSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS-------------------------
T ss_pred cCCCCCCHHHHHHHHHH----HcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC-------------------------
Confidence 4564 789999877554 344 89999999999999999999886443211
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
..|+++|.++|..+..|+.+.++++
T Consensus 161 ---~~~~~lil~PtreLa~Q~~~~~~~l 185 (300)
T 3fmo_B 161 ---KYPQCLCLSPTYELALQTGKVIEQM 185 (300)
T ss_dssp ---CSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ---CCceEEEEcCcHHHHHHHHHHHHHH
Confidence 3468999999999999988777653
No 56
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.96 E-value=1.1e-09 Score=125.42 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 13 Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
.+++|||.|.+.+..+. +++.+++.||||+|||++|+.|++........ .
T Consensus 4 ~~~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~--------------------------~ 53 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------------------G 53 (556)
T ss_dssp ----CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------------------S
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc--------------------------c
Confidence 57899999999877664 46889999999999999999998876554321 1
Q ss_pred CCCeEEEeCCccchHHHHHHHhhc
Q 004379 93 KLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..++++|.++|.++..|..+++++
T Consensus 54 ~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 54 RKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp CCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 236799999999999999988765
No 57
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.91 E-value=3.1e-09 Score=107.79 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=52.6
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 10 DVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 10 ~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
.+.|++++|+.|.+.+..+. +++.+++.+|||+|||+.++.++... +
T Consensus 87 ~~~~~~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~----~------------------------- 133 (237)
T 2fz4_A 87 YFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL----S------------------------- 133 (237)
T ss_dssp CCCCCCCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS----C-------------------------
T ss_pred cccCCCCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc----C-------------------------
Confidence 34456789999999877643 44569999999999999988775531 2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++.++|.++..|+.+++++
T Consensus 134 -----~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 134 -----TPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp -----SCEEEEESSHHHHHHHHHHHGG
T ss_pred -----CCEEEEeCCHHHHHHHHHHHHh
Confidence 2577778888899998888765
No 58
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.87 E-value=7.5e-09 Score=121.89 Aligned_cols=74 Identities=20% Similarity=0.228 Sum_probs=64.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhcC--CceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 12 EFPFEAYDCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 12 ~Fpf~~r~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
.+||++++.|.+.+..|.+.+..+ .+.++.||||+|||++|+.|++..... +
T Consensus 364 ~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-g------------------------- 417 (780)
T 1gm5_A 364 SLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-G------------------------- 417 (780)
T ss_dssp HSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-T-------------------------
T ss_pred hCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-C-------------------------
Confidence 689999999999999999998876 488999999999999999998876542 2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
+++++.++|..+..|..+++++
T Consensus 418 -----~qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 418 -----FQTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp -----SCEEEECSCHHHHHHHHHHHHH
T ss_pred -----CeEEEEeCcHHHHHHHHHHHHH
Confidence 4789999999999999888765
No 59
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.87 E-value=4.5e-09 Score=109.63 Aligned_cols=69 Identities=16% Similarity=0.104 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCC
Q 004379 15 FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKL 94 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (758)
+++|+.|.+.+..+.+. +..++.||||+|||++++.++.......+
T Consensus 112 ~~l~~~Q~~ai~~~l~~----~~~ll~~~tGsGKT~~~~~~~~~~~~~~~------------------------------ 157 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN----RRRILNLPTSAGRSLIQALLARYYLENYE------------------------------ 157 (282)
T ss_dssp CCCCHHHHHHHHHHHHH----SEEEECCCTTSCHHHHHHHHHHHHHHHCS------------------------------
T ss_pred cCccHHHHHHHHHHHhc----CCeEEEcCCCCCcHHHHHHHHHHHHHcCC------------------------------
Confidence 68999999988876553 56788999999999999888776544211
Q ss_pred CeEEEeCCccchHHHHHHHhhcC
Q 004379 95 PTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 95 ~kIi~~trT~sql~Q~i~eLkkl 117 (758)
.+++|.++|.++.+|..+++++.
T Consensus 158 ~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 158 GKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHh
Confidence 37889999999999999888753
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.86 E-value=3.9e-09 Score=118.57 Aligned_cols=69 Identities=20% Similarity=0.149 Sum_probs=55.7
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 10 DVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 10 ~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
...|++++||.|.+.+..+. +++.+++.+|||+|||++++.++... +
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~----~------------------------- 133 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL----S------------------------- 133 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH----C-------------------------
T ss_pred cccCCCCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc----C-------------------------
Confidence 34578899999999887654 44669999999999999999886532 2
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+++|.++|.++..|+.+++++
T Consensus 134 -----~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 134 -----TPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp -----SCEEEEESSHHHHHHHHHHGGG
T ss_pred -----CCEEEEECCHHHHHHHHHHHHh
Confidence 3688888899999999998875
No 61
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.86 E-value=3.1e-08 Score=117.20 Aligned_cols=147 Identities=12% Similarity=0.093 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhhh-cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHH---hc-CCC-C-eeCCCCC-CChHHH
Q 004379 499 EYKQELGNTIVNIARI-VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERI---CK-HKK-P-VVEPRQS-SLFPLA 570 (758)
Q Consensus 499 ~~~~~l~~~i~~~~~~-~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l---~~-~k~-~-~~e~~~~-~~~~~~ 570 (758)
++...+...+.++... .+|.+|||+++....+.+++.+.+.. ..+ .. .+. + .+-.+-. .+...+
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--------~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG--------DQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH--------HHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH--------HhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 4455566666666554 46789999999999999998886410 111 00 011 1 1111111 111112
Q ss_pred HHHHHHHhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCcccccccc
Q 004379 571 IEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSF 650 (758)
Q Consensus 571 i~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~ 650 (758)
++.|+.. ..+.+...||+|+ ..+..|||++| .+.||-.|+|-..-.||.. +-. .
T Consensus 357 ~~~f~~~-~~~~g~~kVlVAT--~iae~GidIp~--v~~VId~g~~k~~~yd~~~----------g~~-----------~ 410 (773)
T 2xau_A 357 FEPAPES-HNGRPGRKVVIST--NIAETSLTIDG--IVYVVDPGFSKQKVYNPRI----------RVE-----------S 410 (773)
T ss_dssp GSCCCCC-SSSSCCEEEEEEC--THHHHTCCCTT--EEEEEECSEEEEEEEETTT----------TEE-----------E
T ss_pred Hhhcccc-cCCCCceEEEEeC--cHHHhCcCcCC--eEEEEeCCCccceeecccc----------Ccc-----------c
Confidence 2222100 0001345788888 79999999996 7899998886322122210 000 0
Q ss_pred CCcchhHHHHHHHHHHHhcCccccCCCCeEEEEEe
Q 004379 651 LSGEDWYNQQASRAVNQAVGRVIRHRHDYGAIIFC 685 (758)
Q Consensus 651 l~~~~~y~~~a~~~~~QaiGRlIR~~~D~g~vill 685 (758)
+ . ..|.......|.+||.=|. ..|..+.+
T Consensus 411 L-~---~~p~S~~s~~QR~GRaGR~--~~G~~~~l 439 (773)
T 2xau_A 411 L-L---VSPISKASAQQRAGRAGRT--RPGKCFRL 439 (773)
T ss_dssp E-E---EEECCHHHHHHHHHGGGSS--SSEEEEES
T ss_pred c-c---cccCCHHHHHhhccccCCC--CCCEEEEE
Confidence 0 0 0122346678999999998 45666654
No 62
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.85 E-value=1.1e-08 Score=120.55 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=59.3
Q ss_pred cCCC-CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCC
Q 004379 12 EFPF-EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSG 90 (758)
Q Consensus 12 ~Fpf-~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (758)
.|+| +||+.|.+.+..+. +++++++.||||+|||++|+.|++........
T Consensus 8 ~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~------------------------- 58 (696)
T 2ykg_A 8 LYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------------------------- 58 (696)
T ss_dssp TTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT-------------------------
T ss_pred ccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc-------------------------
Confidence 3565 58999999887754 47899999999999999999999876654321
Q ss_pred CCCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 91 DSKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 91 ~~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
...+++++.++|.++..|..+++++.
T Consensus 59 -~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 59 -GQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp -TCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred -CCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 01247889999999999999888753
No 63
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.81 E-value=2e-06 Score=99.97 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=50.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 13 Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
.+|.|+|.|..-+-.+ -+|+ +.||+||+|||+++++|++..+..
T Consensus 80 lG~~pt~VQ~~~ip~l----l~G~--Iaea~TGeGKTlaf~LP~~l~aL~------------------------------ 123 (844)
T 1tf5_A 80 TGMFPFKVQLMGGVAL----HDGN--IAEMKTGEGKTLTSTLPVYLNALT------------------------------ 123 (844)
T ss_dssp HSCCCCHHHHHHHHHH----HTTS--EEECCTTSCHHHHHHHHHHHHHTT------------------------------
T ss_pred cCCCCcHHHHHhhHHH----hCCC--EEEccCCcHHHHHHHHHHHHHHHc------------------------------
Confidence 4578999998876554 3455 999999999999999998853321
Q ss_pred CCCeEEEeCCccchHHHHHHHhhc
Q 004379 93 KLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+.+.+.|.|.-+..|..+++++
T Consensus 124 -g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 124 -GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp -SSCEEEEESSHHHHHHHHHHHHH
T ss_pred -CCCEEEEeCCHHHHHHHHHHHHH
Confidence 14688888898888887766543
No 64
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.80 E-value=1.1e-08 Score=122.35 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
+++|||.|.+.+..+ .+++.+++.||||+|||++|+.|++........ ..
T Consensus 246 ~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--------------------------~~ 295 (797)
T 4a2q_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------------------GR 295 (797)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS--------------------------SC
T ss_pred CCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc--------------------------cC
Confidence 346899999987765 456889999999999999999998876654321 11
Q ss_pred CCeEEEeCCccchHHHHHHHhhc
Q 004379 94 LPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|.++|..+..|...++++
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH
Confidence 35789999999999999888765
No 65
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.71 E-value=1.4e-08 Score=123.20 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=55.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
+++||+.|.+.+..+ .+|+.+++.||||+|||++|+.|++........ ..
T Consensus 246 ~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~--------------------------~~ 295 (936)
T 4a2w_A 246 TKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPA--------------------------GR 295 (936)
T ss_dssp --CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS--------------------------SC
T ss_pred CCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc--------------------------cC
Confidence 357899999987766 357889999999999999999998754332110 11
Q ss_pred CCeEEEeCCccchHHHHHHHhhc
Q 004379 94 LPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.++++|.++|..+..|..+++++
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH
Confidence 35789999999999999988865
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.69 E-value=4.5e-06 Score=96.95 Aligned_cols=133 Identities=11% Similarity=0.022 Sum_probs=73.6
Q ss_pred cccEEEEecccCCCh-HhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHHHHHHHHHh
Q 004379 434 EVGSIILTSGTLSPM-DSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIA 512 (758)
Q Consensus 434 ~~~~vil~SaTL~p~-~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~ 512 (758)
.+..+.-|+||+..- ..|....|++.. . .|.-.+..+. +.+ ..-|. +..+-...+.+.|.+..
T Consensus 394 ~Y~kL~GMTGTa~te~~Ef~~iY~l~vv-~--IPtn~p~~R~------d~~-----d~v~~--t~~~K~~al~~~i~~~~ 457 (922)
T 1nkt_A 394 LYDKLAGMTGTAQTEAAELHEIYKLGVV-S--IPTNMPMIRE------DQS-----DLIYK--TEEAKYIAVVDDVAERY 457 (922)
T ss_dssp TSSEEEEEESCCGGGHHHHHHHHCCEEE-E--CCCSSCCCCE------ECC-----CEEES--CHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhHHHHHHHHhCCCeE-E--eCCCCCcccc------cCC-----cEEEe--CHHHHHHHHHHHHHHHH
Confidence 567899999999763 467787887631 1 1111110000 000 00111 12233455655555443
Q ss_pred hhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEe
Q 004379 513 RIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVC 592 (758)
Q Consensus 513 ~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~ 592 (758)
. .+..+|||++|-+.-+.+...|++.+. +..++..+.. ... +..+......|+|++|+
T Consensus 458 ~-~gqpvLVft~Sie~sE~Ls~~L~~~Gi-------------~~~vLnak~~-~rE------a~iia~agr~G~VtIAT- 515 (922)
T 1nkt_A 458 A-KGQPVLIGTTSVERSEYLSRQFTKRRI-------------PHNVLNAKYH-EQE------ATIIAVAGRRGGVTVAT- 515 (922)
T ss_dssp H-TTCCEEEEESCHHHHHHHHHHHHHTTC-------------CCEEECSSCH-HHH------HHHHHTTTSTTCEEEEE-
T ss_pred h-cCCcEEEEECCHHHHHHHHHHHHHCCC-------------CEEEecCChh-HHH------HHHHHhcCCCCeEEEec-
Confidence 2 344699999999999999998876531 1223322211 111 11111112358999999
Q ss_pred cCccccccccCCC
Q 004379 593 RGKVSEGLDFADH 605 (758)
Q Consensus 593 ~g~~~EGiD~~~~ 605 (758)
.-...|+|++..
T Consensus 516 -nmAgRGtDI~l~ 527 (922)
T 1nkt_A 516 -NMAGRGTDIVLG 527 (922)
T ss_dssp -TTCSTTCCCCTT
T ss_pred -chhhcCccccCC
Confidence 788999999864
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.51 E-value=3.5e-07 Score=103.34 Aligned_cols=95 Identities=11% Similarity=0.024 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhcc
Q 004379 502 QELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKD 580 (758)
Q Consensus 502 ~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~ 580 (758)
..+.+.+.+... .+..++||+.+-..++.+...+.... ..+..++....+ .+..+++++|++
T Consensus 328 ~~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~------------~~~~~~~~g~~~~~~R~~~~~~F~~---- 390 (500)
T 1z63_A 328 IRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKEL------------NTEVPFLYGELSKKERDDIISKFQN---- 390 (500)
T ss_dssp HHHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHHH------------TCCCCEEETTSCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHhh------------CCCeEEEECCCCHHHHHHHHHHhcC----
Confidence 445555555443 45689999999999888888776420 112233333322 356778889986
Q ss_pred CCCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 581 TSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 581 ~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
+.....+|+++ ....||+|+++ +..||+..+|+
T Consensus 391 ~~~~~vil~st--~~~~~Glnl~~--~~~vi~~d~~~ 423 (500)
T 1z63_A 391 NPSVKFIVLSV--KAGGFGINLTS--ANRVIHFDRWW 423 (500)
T ss_dssp CTTCCCCEEEC--CCC-CCCCCTT--CSEEEESSCCS
T ss_pred CCCCCEEEEec--ccccCCCchhh--CCEEEEeCCCC
Confidence 11122477777 78899999986 88999988776
No 68
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.49 E-value=8.6e-05 Score=84.63 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=84.7
Q ss_pred hchhhhcccccEEEEecccCCCh-HhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHH
Q 004379 426 AMQEFSRLEVGSIILTSGTLSPM-DSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQEL 504 (758)
Q Consensus 426 ~l~~~l~~~~~~vil~SaTL~p~-~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l 504 (758)
.++.++. .+..+..||||+.+- +.|....|++.. ..|..-+.... -.+ ..-| .+..+-...+
T Consensus 401 T~Qn~Fr-~Y~kL~GMTGTa~te~~Ef~~iY~l~vv---~IPtnkp~~R~---d~~--------d~vy--~t~~eK~~al 463 (822)
T 3jux_A 401 TFQNYFR-MYEKLAGMTGTAKTEESEFVQVYGMEVV---VIPTHKPMIRK---DHD--------DLVF--RTQKEKYEKI 463 (822)
T ss_dssp CHHHHHT-TSSEEEEEESSCGGGHHHHHHHSCCCEE---ECCCSSCCCCE---ECC--------CEEE--SSHHHHHHHH
T ss_pred HHHHHHH-HhhHHeEECCCCchHHHHHHHHhCCeEE---EECCCCCccee---ecC--------cEEE--ecHHHHHHHH
Confidence 3455554 678899999999874 467788887631 11111110000 000 0011 1223334566
Q ss_pred HHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCC
Q 004379 505 GNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTS 584 (758)
Q Consensus 505 ~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~ 584 (758)
.+.|.+... .+..+|||++|....+.+...|.+.+. ...++..+.. .....+..+. + .+
T Consensus 464 ~~~I~~~~~-~gqpVLVFt~S~e~sE~Ls~~L~~~Gi-------------~~~vLhgkq~-~rE~~ii~~a-----g-~~ 522 (822)
T 3jux_A 464 VEEIEKRYK-KGQPVLVGTTSIEKSELLSSMLKKKGI-------------PHQVLNAKYH-EKEAEIVAKA-----G-QK 522 (822)
T ss_dssp HHHHHHHHH-HTCCEEEEESSHHHHHHHHHHHHTTTC-------------CCEEECSCHH-HHHHHHHHHH-----H-ST
T ss_pred HHHHHHHhh-CCCCEEEEECCHHHHHHHHHHHHHCCC-------------CEEEeeCCch-HHHHHHHHhC-----C-CC
Confidence 666555432 355799999999999999998876531 1122222211 1111121111 1 35
Q ss_pred CeEEEEEecCccccccccC-CCC-----ceEEEEEccCC
Q 004379 585 GAVFFAVCRGKVSEGLDFA-DHA-----GRAVVITGMPF 617 (758)
Q Consensus 585 ~~vL~~v~~g~~~EGiD~~-~~~-----~r~vii~glPf 617 (758)
+.|++|+ .-.+.|+|++ |+. +-.||-.-+|-
T Consensus 523 g~VtVAT--dmAgRGtDI~lg~~V~~~GglhVInte~Pe 559 (822)
T 3jux_A 523 GMVTIAT--NMAGRGTDIKLGPGVAELGGLCIIGTERHE 559 (822)
T ss_dssp TCEEEEE--TTTTTTCCCCCCTTTTTTTSCEEEESSCCS
T ss_pred CeEEEEc--chhhCCcCccCCcchhhcCCCEEEecCCCC
Confidence 7899999 7899999997 322 23677666553
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.30 E-value=1.3e-06 Score=105.59 Aligned_cols=73 Identities=15% Similarity=0.236 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcC----------CceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCC
Q 004379 15 FEAYDCQLVYMEKVIQSLQNK----------CNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSV 84 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~~----------~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (758)
..|||.|.+.+..+.+++.++ +.+++.+|||||||+++ ++++.++...+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~-------------------- 328 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD-------------------- 328 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------------------
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------------------
Confidence 358999999999999988643 67899999999999998 45554433211
Q ss_pred CCCCCCCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 85 NSSQSGDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 85 ~~~~~~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..++|++.|.|..+..|+.+++++
T Consensus 329 --------~~~rvLvlvpr~eL~~Q~~~~f~~ 352 (1038)
T 2w00_A 329 --------FIDKVFFVVDRKDLDYQTMKEYQR 352 (1038)
T ss_dssp --------TCCEEEEEECGGGCCHHHHHHHHT
T ss_pred --------CCceEEEEeCcHHHHHHHHHHHHH
Confidence 235899999999999999888765
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.30 E-value=2.2e-06 Score=104.07 Aligned_cols=84 Identities=15% Similarity=0.111 Sum_probs=59.5
Q ss_pred hcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEe
Q 004379 514 IVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVC 592 (758)
Q Consensus 514 ~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~ 592 (758)
..++.++||+++....+.+...+..... .+...+.+. ...+....++.|+. +.+.-.||+++
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g------------~~~~~lhG~~~~~~R~~~l~~F~~----g~~~~~vLvaT- 563 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREG------------IRAAVFHEGMSIIERDRAAAWFAE----EDTGAQVLLCS- 563 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTC------------CCEEEECTTSCTTHHHHHHHHHHS----TTSSCEEEECS-
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcC------------CcEEEEeCCCCHHHHHHHHHHHhC----CCCcccEEEec-
Confidence 3467899999999999999988874211 112233332 23457788888985 11125788887
Q ss_pred cCccccccccCCCCceEEEEEccCC
Q 004379 593 RGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 593 ~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
...++|||+++ +..||+..+|+
T Consensus 564 -~v~~~GlDl~~--~~~VI~~d~p~ 585 (968)
T 3dmq_A 564 -EIGSEGRNFQF--ASHMVMFDLPF 585 (968)
T ss_dssp -CCTTCSSCCTT--CCEEECSSCCS
T ss_pred -chhhcCCCccc--CcEEEEecCCC
Confidence 79999999998 78899988775
No 71
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.17 E-value=7.3e-06 Score=97.83 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCC
Q 004379 16 EAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLP 95 (758)
Q Consensus 16 ~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (758)
+.||.|++.+..+.....++..+|+-.+||+|||+..+..+.......+. ..|
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~---------------------------~~~ 288 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ---------------------------NGP 288 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC---------------------------CSC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC---------------------------CCC
Confidence 57999999999999999999999999999999999887654332222221 235
Q ss_pred eEEEeCCccchHHHHHHHhhcCCCCCceE
Q 004379 96 TILYTSRTHSQLRQVIQELKTSNYRPKMV 124 (758)
Q Consensus 96 kIi~~trT~sql~Q~i~eLkkl~~~~~~~ 124 (758)
.+|+|. .+++.|...|+++.....+++
T Consensus 289 ~LIV~P--~sll~qW~~E~~~~~p~~~v~ 315 (800)
T 3mwy_W 289 HIIVVP--LSTMPAWLDTFEKWAPDLNCI 315 (800)
T ss_dssp EEEECC--TTTHHHHHHHHHHHSTTCCEE
T ss_pred EEEEEC--chHHHHHHHHHHHHCCCceEE
Confidence 566664 467889999998754333433
No 72
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.06 E-value=5.1e-06 Score=96.32 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=49.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
+..|++.|..-+-.+ -+|+ +.||+||||||+++++|++..+. .
T Consensus 72 g~~p~~VQ~~~i~~l----l~G~--Iaem~TGsGKTlaf~LP~l~~~l-~------------------------------ 114 (853)
T 2fsf_A 72 GMRHFDVQLLGGMVL----NERC--IAEMRTGEGKTLTATLPAYLNAL-T------------------------------ 114 (853)
T ss_dssp SCCCCHHHHHHHHHH----HSSE--EEECCTTSCHHHHHHHHHHHHHT-T------------------------------
T ss_pred CCCCChHHHhhcccc----cCCe--eeeecCCchHHHHHHHHHHHHHH-c------------------------------
Confidence 467899998876543 3555 99999999999999999885332 1
Q ss_pred CCeEEEeCCccchHHHHHHHhhc
Q 004379 94 LPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+.+.+.|.|.-+..|..+.+++
T Consensus 115 g~~vlVltPTreLA~Q~~e~~~~ 137 (853)
T 2fsf_A 115 GKGVHVVTVNDYLAQRDAENNRP 137 (853)
T ss_dssp SSCCEEEESSHHHHHHHHHHHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHHHH
Confidence 14677888898888887766543
No 73
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.91 E-value=6.7e-05 Score=70.85 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=58.3
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||+++....+.+++.+..... ....+..+. ..+....++.|++ ++-.||+++
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------~~~~~hg~~~~~~r~~~~~~f~~------g~~~vlv~T-- 92 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY-------------PCDKIHGGMIQEDRFDVMNEFKR------GEYRYLVAT-- 92 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TSCSEEEEC--
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------------cEEEEeCCCCHHHHHHHHHHHHc------CCCeEEEEC--
Confidence 456899999999999999998875421 112222221 2346677788875 456799998
Q ss_pred CccccccccCCCCceEEEEEccCC
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPf 617 (758)
..+++|+|+|+ ++.||..++|.
T Consensus 93 ~~~~~Gld~~~--~~~Vi~~~~p~ 114 (163)
T 2hjv_A 93 DVAARGIDIEN--ISLVINYDLPL 114 (163)
T ss_dssp GGGTTTCCCSC--CSEEEESSCCS
T ss_pred ChhhcCCchhc--CCEEEEeCCCC
Confidence 89999999997 77899988764
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.90 E-value=1.7e-05 Score=92.04 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=58.8
Q ss_pred hchhhhcccccEEEEecccCCCh-HhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHH
Q 004379 426 AMQEFSRLEVGSIILTSGTLSPM-DSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQEL 504 (758)
Q Consensus 426 ~l~~~l~~~~~~vil~SaTL~p~-~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l 504 (758)
.++.++. .+..+--|+||...- ..|....|++.. ..|.-.+..+. -.| +.-| ++..+...++
T Consensus 370 T~QnyFr-~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv---~IPTn~p~~R~---D~~--------d~vy--~t~~~K~~AI 432 (997)
T 2ipc_A 370 TYQNFFR-LYEKRAGMTGTAKTEEKEFQEIYGMDVV---VVPTNRPVIRK---DFP--------DVVY--RTEKGKFYAV 432 (997)
T ss_dssp CHHHHHT-TSSEEEEEESSCGGGHHHHHHHHCCCEE---ECCCSSCCCCE---EEE--------EEEE--SSHHHHHHHH
T ss_pred eHHHHHH-hChHheecCCCchHHHHHHHHHhCCCEE---EcCCCCCcccc---cCC--------CeEE--cCHHHHHHHH
Confidence 4455554 678999999999873 467888888631 12211111110 011 1123 2234445678
Q ss_pred HHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHh
Q 004379 505 GNTIVNIARIVPDGLLIFFPSYYLMDQCIACWK 537 (758)
Q Consensus 505 ~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~ 537 (758)
++.|.+... .+..|||.++|-+.-+.+.+.|+
T Consensus 433 v~eI~~~~~-~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 433 VEEIAEKYE-RGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHHH-HTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCEEEEeCCHHHHHHHHHHHh
Confidence 887777654 45679999999999998888887
No 75
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.88 E-value=2.4e-05 Score=90.93 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHh-----cCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 15 FEAYDCQLVYMEKVIQSLQ-----NKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~-----~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
...||.|++.+..+++++. ++..+|+-.+||+|||+..+..+....+....
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~------------------------ 109 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD------------------------ 109 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT------------------------
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc------------------------
Confidence 4679999999999999874 45678999999999999988664443332211
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhc
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..+...++++.+++ +++.|..+|+++
T Consensus 110 ~~p~~~~~LiV~P~-sll~qW~~E~~~ 135 (644)
T 1z3i_X 110 CKPEIDKVIVVSPS-SLVRNWYNEVGK 135 (644)
T ss_dssp SSCSCSCEEEEECH-HHHHHHHHHHHH
T ss_pred ccCCCCcEEEEecH-HHHHHHHHHHHH
Confidence 00112245555555 788999999876
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.86 E-value=3.8e-05 Score=74.67 Aligned_cols=87 Identities=21% Similarity=0.199 Sum_probs=62.8
Q ss_pred HHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCe
Q 004379 508 IVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGA 586 (758)
Q Consensus 508 i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~ 586 (758)
|.+++...++.+|||+++....+.+++.+..... ....+-... ..+..+.++.|+. ++-.
T Consensus 46 L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~-------------~~~~lhg~~~~~~R~~~l~~F~~------g~~~ 106 (191)
T 2p6n_A 46 LLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV-------------EAVAIHGGKDQEERTKAIEAFRE------GKKD 106 (191)
T ss_dssp HHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC-------------CEEEECTTSCHHHHHHHHHHHHH------TSCS
T ss_pred HHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-------------cEEEEeCCCCHHHHHHHHHHHhc------CCCE
Confidence 4455555678899999999999999988864321 112222221 2346678888886 4567
Q ss_pred EEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 587 VFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 587 vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
||+++ ..+++|+|+++ ++.||...+|.
T Consensus 107 vLvaT--~~~~~Gldi~~--v~~VI~~d~p~ 133 (191)
T 2p6n_A 107 VLVAT--DVASKGLDFPA--IQHVINYDMPE 133 (191)
T ss_dssp EEEEC--HHHHTTCCCCC--CSEEEESSCCS
T ss_pred EEEEc--CchhcCCCccc--CCEEEEeCCCC
Confidence 99998 79999999987 77899987764
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.82 E-value=0.00013 Score=70.38 Aligned_cols=79 Identities=13% Similarity=0.126 Sum_probs=49.5
Q ss_pred CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 516 ~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
++.+|||+++....+.++..+..... ....+-.+ ...+....++.|+. ++-.||+++ .
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-------------~~~~lhg~~~~~~r~~~~~~f~~------g~~~vLvaT--~ 104 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-------------ACTSIHGDRSQRDREEALHQFRS------GKSPILVAT--A 104 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-------------CEEEEC--------CHHHHHHHH------TSSSEEEEE--C
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEeCCCCHHHHHHHHHHHHc------CCCeEEEEc--C
Confidence 46799999999999999998875421 11122221 22345678889986 456799999 8
Q ss_pred ccccccccCCCCceEEEEEccCC
Q 004379 595 KVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPf 617 (758)
.+++|+|+++ +..||...+|.
T Consensus 105 ~~~~Gldi~~--~~~VI~~d~p~ 125 (185)
T 2jgn_A 105 VAARGLDISN--VKHVINFDLPS 125 (185)
T ss_dssp ------CCCS--BSEEEESSCCS
T ss_pred hhhcCCCccc--CCEEEEeCCCC
Confidence 9999999997 77898877664
No 78
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.78 E-value=5.7e-05 Score=71.47 Aligned_cols=80 Identities=10% Similarity=0.172 Sum_probs=58.2
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||+++....+.++..+..... ....+-.. ...+....++.|+. ++..||+++
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------~~~~~~~~~~~~~r~~~~~~f~~------g~~~vlv~T-- 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKF-------------TVSAIYSDLPQQERDTIMKEFRS------GSSRILIST-- 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TSCSEEEEE--
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEECCCCHHHHHHHHHHHHc------CCCEEEEEc--
Confidence 356799999999999999998875421 11222222 12346667788874 456899999
Q ss_pred CccccccccCCCCceEEEEEccCC
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPf 617 (758)
..+++|+|+++ ++.||..++|.
T Consensus 88 ~~~~~G~d~~~--~~~Vi~~~~p~ 109 (165)
T 1fuk_A 88 DLLARGIDVQQ--VSLVINYDLPA 109 (165)
T ss_dssp GGGTTTCCCCS--CSEEEESSCCS
T ss_pred ChhhcCCCccc--CCEEEEeCCCC
Confidence 89999999996 78899988775
No 79
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.77 E-value=0.00011 Score=85.50 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeE
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTI 97 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI 97 (758)
-+.|++ +|..++..+...+|.+|.|||||.... -.+.+....+ ++|
T Consensus 191 N~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~~------------------------------~~I 236 (646)
T 4b3f_X 191 DTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQG------------------------------LKV 236 (646)
T ss_dssp CHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHTT------------------------------CCE
T ss_pred CHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhCC------------------------------CeE
Confidence 368887 566677777889999999999998654 3344444432 489
Q ss_pred EEeCCccchHHHHHHHhhcCCCCCceEEecCCc
Q 004379 98 LYTSRTHSQLRQVIQELKTSNYRPKMVILGSRE 130 (758)
Q Consensus 98 i~~trT~sql~Q~i~eLkkl~~~~~~~~l~sr~ 130 (758)
.+||.|+.-.+++++.|...+. +++=+|...
T Consensus 237 Lv~a~TN~AvD~i~erL~~~~~--~ilRlG~~~ 267 (646)
T 4b3f_X 237 LCCAPSNIAVDNLVERLALCKQ--RILRLGHPA 267 (646)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC--CEEECSCCS
T ss_pred EEEcCchHHHHHHHHHHHhcCC--ceEEecchh
Confidence 9999999999999888876543 333345443
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.77 E-value=0.00014 Score=69.52 Aligned_cols=88 Identities=14% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHhhhc-CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCC
Q 004379 508 IVNIARIV-PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSG 585 (758)
Q Consensus 508 i~~~~~~~-~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~ 585 (758)
+.+++... ++.+|||+++....+.++..+..... +...+-... ..+....++.|+. ++-
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------~~~~~~g~~~~~~R~~~~~~f~~------g~~ 85 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------------QVSLLSGELTVEQRASIIQRFRD------GKE 85 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------------CEEEECSSCCHHHHHHHHHHHHT------TSC
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------------cEEEEeCCCCHHHHHHHHHHHHc------CCC
Confidence 34444444 46799999999999999998876421 112222221 2346677788875 456
Q ss_pred eEEEEEecCccccccccCCCCceEEEEEccCCC
Q 004379 586 AVFFAVCRGKVSEGLDFADHAGRAVVITGMPFA 618 (758)
Q Consensus 586 ~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp 618 (758)
.||+++ ..+++|||+++ ++.||..++|.-
T Consensus 86 ~vLvaT--~~~~~Gid~~~--~~~Vi~~d~p~~ 114 (175)
T 2rb4_A 86 KVLITT--NVCARGIDVKQ--VTIVVNFDLPVK 114 (175)
T ss_dssp SEEEEC--CSCCTTTCCTT--EEEEEESSCCC-
T ss_pred eEEEEe--cchhcCCCccc--CCEEEEeCCCCC
Confidence 899998 89999999998 889999988853
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.61 E-value=0.00013 Score=69.52 Aligned_cols=79 Identities=10% Similarity=0.039 Sum_probs=57.6
Q ss_pred CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 516 ~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
++.+|||+++....+.+++.+..... ....+.... ..+....++.|+. ++..||+++ .
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~-------------~~~~~hg~~~~~~r~~~~~~f~~------g~~~vLvaT--~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQNF-------------PAIAIHRGMPQEERLSRYQQFKD------FQRRILVAT--N 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTSCHHHHHHHHHHHHT------TSCSEEEES--S
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCC-------------CEEEEECCCCHHHHHHHHHHHHC------CCCcEEEEC--C
Confidence 46799999999999999998875421 112222221 2345677788875 456899998 8
Q ss_pred ccccccccCCCCceEEEEEccCC
Q 004379 595 KVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPf 617 (758)
.+++|+|+++ ++.||..++|.
T Consensus 90 ~~~~Gldi~~--~~~Vi~~d~p~ 110 (172)
T 1t5i_A 90 LFGRGMDIER--VNIAFNYDMPE 110 (172)
T ss_dssp CCSTTCCGGG--CSEEEESSCCS
T ss_pred chhcCcchhh--CCEEEEECCCC
Confidence 9999999987 78899988764
No 82
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.59 E-value=2.5e-05 Score=86.99 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=48.6
Q ss_pred HHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeEEEeCCccchHH
Q 004379 29 IQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLR 108 (758)
Q Consensus 29 ~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIi~~trT~sql~ 108 (758)
.+++.+++++++.||||+|||++|+.|++......+ ++++|.++|..+..
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~------------------------------~~~lvl~Ptr~La~ 64 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR------------------------------LRTAVLAPTRVVAA 64 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT------------------------------CCEEEEECSHHHHH
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC------------------------------CcEEEECchHHHHH
Confidence 667888999999999999999999999987554322 57999999999999
Q ss_pred HHHHHhh
Q 004379 109 QVIQELK 115 (758)
Q Consensus 109 Q~i~eLk 115 (758)
|+.+.++
T Consensus 65 Q~~~~l~ 71 (459)
T 2z83_A 65 EMAEALR 71 (459)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9988775
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.55 E-value=0.00035 Score=69.05 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=58.0
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCC-CCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQ-SSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~-~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||+++....+.+++.+..... ....+-..- ..+....++.|+. ++-.||+|+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------------~~~~lhg~~~~~~r~~~~~~f~~------g~~~vlvaT-- 88 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH-------------PAQALHGDLSQGERERVLGAFRQ------GEVRVLVAT-- 88 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC-------------CEEEECSSSCHHHHHHHHHHHHS------SSCCEEEEC--
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-------------CEEEEECCCCHHHHHHHHHHHHC------CCCeEEEec--
Confidence 467899999999999999988865321 112222221 2345667788874 456799998
Q ss_pred CccccccccCCCCceEEEEEccCC
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPf 617 (758)
..+.+|||+++ ++.||..++|.
T Consensus 89 ~~~~~Gidi~~--v~~Vi~~~~p~ 110 (212)
T 3eaq_A 89 DVAARGLDIPQ--VDLVVHYRLPD 110 (212)
T ss_dssp TTTTCSSSCCC--BSEEEESSCCS
T ss_pred ChhhcCCCCcc--CcEEEECCCCc
Confidence 89999999997 78899888775
No 84
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.53 E-value=3.6e-05 Score=85.22 Aligned_cols=75 Identities=12% Similarity=0.084 Sum_probs=48.6
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.++||++|.+..+.+++.++.... +...+.. .+..+.++.|++ ++-.||+|+ .
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~-------------~v~~lhg---~~R~~~~~~F~~------g~~~vLVaT--~ 231 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGK-------------SVVVLNR---KTFEREYPTIKQ------KKPDFILAT--D 231 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------------CEEECCS---SSCC--------------CCCSEEEES--S
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCC-------------CEEEecc---hhHHHHHhhhcC------CCceEEEEC--C
Confidence 477899999999999999998875421 1112222 234467788876 467899998 7
Q ss_pred ccccccccCCCCceEEEEEccC
Q 004379 595 KVSEGLDFADHAGRAVVITGMP 616 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glP 616 (758)
.+..|||+| ++.||..|.-
T Consensus 232 v~e~GiDip---v~~VI~~g~~ 250 (440)
T 1yks_A 232 IAEMGANLC---VERVLDCRTA 250 (440)
T ss_dssp STTCCTTCC---CSEEEECCEE
T ss_pred hhheeeccC---ceEEEeCCcc
Confidence 999999998 6788876653
No 85
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.37 E-value=2.1e-05 Score=91.40 Aligned_cols=119 Identities=11% Similarity=0.093 Sum_probs=78.3
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.+|||++|.+..+.+++.|+.... +...+.. .+..+.++.|++ ++-.||+|+ .
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~-------------~v~~lHg---~eR~~v~~~F~~------g~~~VLVaT--d 464 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK-------------RVIQLNR---KSYDTEYPKCKN------GDWDFVITT--D 464 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------------CEEEECS---SSHHHHGGGGGT------CCCSEEEEC--G
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------------eEEEeCh---HHHHHHHHHHHC------CCceEEEEC--c
Confidence 477899999999999999998876421 1122222 356777787764 456899998 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCC--CCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATM--TDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRV 672 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~--~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRl 672 (758)
.+.+|||+| ++.||..|.++.+. .|. .. .|. -.+-.|.....+.|.+||.
T Consensus 465 v~e~GIDip---v~~VI~~g~~~~p~vi~da-----------~~--r~~------------ll~d~P~s~~~y~Qr~GRa 516 (673)
T 2wv9_A 465 ISEMGANFG---ASRVIDCRKSVKPTILDEG-----------EG--RVI------------LSVPSAITSASAAQRRGRV 516 (673)
T ss_dssp GGGTTCCCC---CSEEEECCEECCEEEECST-----------TC--EEE------------ECCSEECCHHHHHHHHTTS
T ss_pred hhhcceeeC---CcEEEECCCcccceeeecc-----------cc--cce------------ecccCCCCHHHHHHHhhcc
Confidence 999999998 68899888766321 010 00 000 0011233456688999999
Q ss_pred ccCCCCeEEEEEe
Q 004379 673 IRHRHDYGAIIFC 685 (758)
Q Consensus 673 IR~~~D~g~vill 685 (758)
=|.....|..+++
T Consensus 517 GR~~g~~G~ai~l 529 (673)
T 2wv9_A 517 GRNPSQIGDEYHY 529 (673)
T ss_dssp SCCSSCCCEEEEE
T ss_pred CCCCCCCCEEEEE
Confidence 9985555655555
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.44 E-value=3.1e-05 Score=73.80 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=56.3
Q ss_pred CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 516 ~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
++.+|||+++....+.+++.++..... ...+... ...+..+.++.|+. ++..||+++ .
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~-------------~~~~~g~~~~~~r~~~~~~f~~------g~~~vLvaT--~ 88 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGIN-------------NCYLEGEMVQGKRNEAIKRLTE------GRVNVLVAT--D 88 (170)
Confidence 457999999999999999888754211 1111111 12345567788875 456799998 8
Q ss_pred ccccccccCCCCceEEEEEccCC
Q 004379 595 KVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPf 617 (758)
.+++|+|+++ ++.||..++|.
T Consensus 89 ~~~~Gid~~~--~~~Vi~~~~p~ 109 (170)
T 2yjt_D 89 VAARGIDIPD--VSHVFNFDMPR 109 (170)
Confidence 9999999998 77899888774
No 87
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.21 E-value=0.00048 Score=69.17 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
+++.++.|.+.+.. +.+|+.+++.||||+|||.++..+.+......+. ..
T Consensus 59 ~~p~~~~q~~~i~~----i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~--------------------------~~ 108 (235)
T 3llm_A 59 LLPVKKFESEILEA----ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR--------------------------AA 108 (235)
T ss_dssp TSGGGGGHHHHHHH----HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC--------------------------GG
T ss_pred cCChHHHHHHHHHH----HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC--------------------------CC
Confidence 45557778776655 4678999999999999999888887754433221 01
Q ss_pred CCeEEEeCCccchHHHHHHHhh
Q 004379 94 LPTILYTSRTHSQLRQVIQELK 115 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLk 115 (758)
..++++...|..+..|+.+.+.
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHH
T ss_pred ceEEEEeccchHHHHHHHHHHH
Confidence 2478888888888777766553
No 88
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=97.21 E-value=0.00017 Score=83.12 Aligned_cols=120 Identities=13% Similarity=0.102 Sum_probs=80.0
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.+|||++|....+.+++.++.... +...+. +.+..+.++.|++ ++-.||+|+ .
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~-------------~v~~lh---g~~R~~~l~~F~~------g~~~VLVaT--d 409 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK-------------RVIQLS---RKTFDTEYPKTKL------TDWDFVVTT--D 409 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC-------------CEEEEC---TTTHHHHTTHHHH------SCCSEEEEC--G
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC-------------cEEEEC---hHHHHHHHHhhcC------CCcEEEEEC--c
Confidence 478999999999999999998875421 112222 2356778889986 467899999 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCC--CCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATM--TDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRV 672 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~--~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRl 672 (758)
-+.+|||++ .+.||..|+++-+- ++.. .+ . .+ .+-.|.-.....|.+||.
T Consensus 410 v~~rGiDi~---v~~VId~g~~~~P~~~~~~~-----------~~--~---------~i---~~d~P~s~~~yiQR~GRa 461 (618)
T 2whx_A 410 ISEMGANFR---AGRVIDPRRCLKPVILTDGP-----------ER--V---------IL---AGPIPVTPASAAQRRGRI 461 (618)
T ss_dssp GGGTTCCCC---CSEEEECCEEEEEEEECSSS-----------CE--E---------EE---EEEEECCHHHHHHHHTTS
T ss_pred HHHcCcccC---ceEEEECcceecceecccCC-----------Cc--e---------EE---cccccCCHHHHHHhcccc
Confidence 999999993 79999999865311 0000 00 0 00 011234456789999999
Q ss_pred ccCCCCeEEEEEee
Q 004379 673 IRHRHDYGAIIFCD 686 (758)
Q Consensus 673 IR~~~D~g~villD 686 (758)
=|.....|..+++.
T Consensus 462 GR~g~~~G~ai~l~ 475 (618)
T 2whx_A 462 GRNPAQEDDQYVFS 475 (618)
T ss_dssp SCCTTCCCEEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 99966555555554
No 89
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.20 E-value=0.0022 Score=74.11 Aligned_cols=68 Identities=18% Similarity=0.292 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeE
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTI 97 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI 97 (758)
-+.|.+.+..+. .+...+|.+|+|||||..... .+.+..... ..+|
T Consensus 182 n~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~-~i~~l~~~~-----------------------------~~~i 227 (624)
T 2gk6_A 182 NHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQG-----------------------------NGPV 227 (624)
T ss_dssp CHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH-HHHHHHTSS-----------------------------SCCE
T ss_pred CHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH-HHHHHHHcC-----------------------------CCeE
Confidence 478988776653 357899999999999986542 233332211 2479
Q ss_pred EEeCCccchHHHHHHHhhcCCC
Q 004379 98 LYTSRTHSQLRQVIQELKTSNY 119 (758)
Q Consensus 98 i~~trT~sql~Q~i~eLkkl~~ 119 (758)
++|+.|+...+++.+.+.+.+.
T Consensus 228 lv~a~tn~A~~~l~~~l~~~~~ 249 (624)
T 2gk6_A 228 LVCAPSNIAVDQLTEKIHQTGL 249 (624)
T ss_dssp EEEESSHHHHHHHHHHHHTTTC
T ss_pred EEEeCcHHHHHHHHHHHHhcCC
Confidence 9999999999999888876553
No 90
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.13 E-value=0.002 Score=67.01 Aligned_cols=80 Identities=16% Similarity=0.154 Sum_probs=59.5
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccCCCCCeEEEEEec
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDTSTSGAVFFAVCR 593 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~ 593 (758)
.++.+|||+++....+.+++.+..... ....+-.. ...+....++.|+. ++..||+|+
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~-------------~~~~lhg~l~~~~r~~~~~~f~~------g~~~vLVaT-- 85 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGH-------------PAQALHGDMSQGERERVMGAFRQ------GEVRVLVAT-- 85 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTC-------------CEEEECSCCCTHHHHHHHHHHHH------TSCCEEEEC--
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------------CEEEEeCCCCHHHHHHHHHHhhc------CCceEEEEe--
Confidence 378999999999999999988875421 11122222 22346677888886 456899998
Q ss_pred CccccccccCCCCceEEEEEccCC
Q 004379 594 GKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 594 g~~~EGiD~~~~~~r~vii~glPf 617 (758)
..+.+|||+++ ++.||..++|.
T Consensus 86 ~va~~Gidi~~--v~~VI~~d~p~ 107 (300)
T 3i32_A 86 DVAARGLDIPQ--VDLVVHYRMPD 107 (300)
T ss_dssp STTTCSTTCCC--CSEEEESSCCS
T ss_pred chhhcCccccc--eeEEEEcCCCC
Confidence 89999999997 77999888875
No 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0026 Score=75.23 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeE
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTI 97 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI 97 (758)
-+.|++.+..+. ++...+|.||.|||||..... .+.+..... ..+|
T Consensus 362 n~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~-~i~~l~~~~-----------------------------~~~I 407 (802)
T 2xzl_A 362 NSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLSKIH-----------------------------KDRI 407 (802)
T ss_dssp CHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHH-HHHHHHHHH-----------------------------CCCE
T ss_pred CHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHH-HHHHHHhCC-----------------------------CCeE
Confidence 478998776553 357889999999999986543 333333211 1379
Q ss_pred EEeCCccchHHHHHHHhhcCCC
Q 004379 98 LYTSRTHSQLRQVIQELKTSNY 119 (758)
Q Consensus 98 i~~trT~sql~Q~i~eLkkl~~ 119 (758)
++++.|+.-.+++.+.|.+.+.
T Consensus 408 Lv~a~tn~A~d~l~~rL~~~g~ 429 (802)
T 2xzl_A 408 LVCAPSNVAVDHLAAKLRDLGL 429 (802)
T ss_dssp EEEESSHHHHHHHHHHHHHTTC
T ss_pred EEEcCcHHHHHHHHHHHHhhCc
Confidence 9999999999999888876653
No 92
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=96.90 E-value=0.0046 Score=73.12 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeE
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTI 97 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI 97 (758)
-+.|++.+..+. ++...+|.+|+|||||.... ..+.+..... ..+|
T Consensus 358 n~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~-~~i~~l~~~~-----------------------------~~~i 403 (800)
T 2wjy_A 358 NHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSA-TIVYHLARQG-----------------------------NGPV 403 (800)
T ss_dssp CHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHH-HHHHHHHTTC-----------------------------SSCE
T ss_pred CHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHH-HHHHHHHHcC-----------------------------CCcE
Confidence 478988766553 35788999999999998644 2233333211 1479
Q ss_pred EEeCCccchHHHHHHHhhcCCC
Q 004379 98 LYTSRTHSQLRQVIQELKTSNY 119 (758)
Q Consensus 98 i~~trT~sql~Q~i~eLkkl~~ 119 (758)
++++.|+.-.+++.+.+.+.+.
T Consensus 404 lv~a~tn~A~~~l~~~l~~~g~ 425 (800)
T 2wjy_A 404 LVCAPSNIAVDQLTEKIHQTGL 425 (800)
T ss_dssp EEEESSHHHHHHHHHHHHTTTC
T ss_pred EEEcCcHHHHHHHHHHHHHhCc
Confidence 9999999999998888876554
No 93
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.68 E-value=0.0016 Score=72.49 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=55.5
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.+|||+++...++.+.+.+.... +.-.....+..++++.|++ ++..||+|+ .
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~~-----------------~~g~~~~~~R~~~~~~F~~------g~~~vLv~T--~ 402 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIPA-----------------ITHRTSREEREEILEGFRT------GRFRAIVSS--Q 402 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCCB-----------------CCSSSCSHHHHTHHHHHHH------SSCSBCBCS--S
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcce-----------------eeCCCCHHHHHHHHHHHhC------CCCCEEEEc--C
Confidence 35689999999999999988764211 1111122346678888986 456789888 8
Q ss_pred ccccccccCCCCceEEEEEccCC
Q 004379 595 KVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPf 617 (758)
.+.+|+|+|+ +..||+...|.
T Consensus 403 ~~~~Gldlp~--~~~Vi~~~~~~ 423 (472)
T 2fwr_A 403 VLDEGIDVPD--ANVGVIMSGSG 423 (472)
T ss_dssp CCCSSSCSCC--BSEEEEECCSS
T ss_pred chhcCccccc--CcEEEEECCCC
Confidence 9999999997 78899987663
No 94
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.51 E-value=0.0018 Score=74.96 Aligned_cols=121 Identities=12% Similarity=0.085 Sum_probs=73.0
Q ss_pred CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 516 PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 516 ~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
..|.+|||.|.+..+.+++.+.+.. .+..++-.+-. .+..+.++.|+. +.++-.||+|+ .
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g-------------~~v~~lHG~L~~~~R~~~~~~F~~----~~g~~~VLVAT--d 380 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRG-------------LESAVIYGSLPPGTKLAQAKKFND----PNDPCKILVAT--D 380 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTT-------------CCCEEECTTSCHHHHHHHHHHHHC----TTSSCCEEEEC--G
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcC-------------CCeeeeeccCCHHHHHHHHHHHHc----cCCCeEEEEeC--c
Confidence 4566777888888888877776431 11122222211 224456667763 11235788888 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcccc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIR 674 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR 674 (758)
.+..|||+ + ++.||..|+|.. -.||. |+.. +.|.....+.|.+||.=|
T Consensus 381 i~e~GlDi-~--v~~VI~~~~~k~-~~~~~-----------G~~~-----------------~~p~s~~~~~QR~GRAGR 428 (677)
T 3rc3_A 381 AIGMGLNL-S--IRRIIFYSLIKP-SINEK-----------GERE-----------------LEPITTSQALQIAGRAGR 428 (677)
T ss_dssp GGGSSCCC-C--BSEEEESCSBC----------------------------------------CBCCHHHHHHHHTTBTC
T ss_pred HHHCCcCc-C--ccEEEECCcccc-ccccC-----------Cccc-----------------cccCCHHHHHHHhcCCCC
Confidence 88999999 4 889999998865 22221 1100 112335678899999999
Q ss_pred CCCC--eEEEEEeec
Q 004379 675 HRHD--YGAIIFCDE 687 (758)
Q Consensus 675 ~~~D--~g~villD~ 687 (758)
...+ .|.++++.+
T Consensus 429 ~g~~g~~G~v~~l~~ 443 (677)
T 3rc3_A 429 FSSRFKEGEVTTMNH 443 (677)
T ss_dssp TTSSCSSEEEEESST
T ss_pred CCCCCCCEEEEEEec
Confidence 8876 688888864
No 95
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.31 E-value=0.013 Score=66.25 Aligned_cols=105 Identities=14% Similarity=0.141 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhhh-cCCcEEEEeccHHHHHHHHHHHhcCCCCCc--hhHHHHHhcCCCCee-CCCCCCChHHHHHHHHH
Q 004379 501 KQELGNTIVNIARI-VPDGLLIFFPSYYLMDQCIACWKNTSHGNL--TTIWERICKHKKPVV-EPRQSSLFPLAIEDYMA 576 (758)
Q Consensus 501 ~~~l~~~i~~~~~~-~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~--~~i~~~l~~~k~~~~-e~~~~~~~~~~i~~~~~ 576 (758)
...+.+.|.+.... .++.+|||+++....+.+.+.+.......+ ... +.......+ ..-...+..+.++.|++
T Consensus 374 ~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 374 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV---LMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------
T ss_pred HHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeE---EEccCCcccccccCHHHHHHHHHHhcc
Confidence 35566666555433 356899999999999999999876410000 000 000000000 00112345667788875
Q ss_pred HhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 577 KLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 577 ~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
.++-.||+|+ ..++||||+|+ +..||...+|.
T Consensus 451 -----~g~~~vLvaT--~~~~~GiDip~--v~~VI~~d~p~ 482 (556)
T 4a2p_A 451 -----SKDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 482 (556)
T ss_dssp --------CCEEEEE--C-------------CEEEEETCCS
T ss_pred -----cCceEEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 1234699999 79999999998 89999988764
No 96
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.30 E-value=0.013 Score=68.04 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhccC
Q 004379 503 ELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKDT 581 (758)
Q Consensus 503 ~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~~ 581 (758)
.+...|..... .++.+|||++|....+.+.+.+.+.+. +..++... ...+..++++.|+.
T Consensus 433 ~Ll~~l~~~~~-~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------~~~~lh~~~~~~~R~~~l~~f~~----- 493 (661)
T 2d7d_A 433 DLIGEIQARIE-RNERVLVTTLTKKMSEDLTDYLKEIGI-------------KVNYLHSEIKTLERIEIIRDLRL----- 493 (661)
T ss_dssp HHHHHHHHHHT-TTCEEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTCCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHhcCC-------------CeEEEeCCCCHHHHHHHHHHHhc-----
Confidence 34444444332 356899999999999999998876421 11122221 12345677788876
Q ss_pred CCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 582 STSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 582 ~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
++-.||+|+ +.+.+|+|+|+ +++||+...+.
T Consensus 494 -g~~~VLVaT--~~l~~GlDip~--v~lVi~~d~d~ 524 (661)
T 2d7d_A 494 -GKYDVLVGI--NLLREGLDIPE--VSLVAILDADK 524 (661)
T ss_dssp -TSCSEEEES--CCCSTTCCCTT--EEEEEETTTTC
T ss_pred -CCeEEEEec--chhhCCcccCC--CCEEEEeCccc
Confidence 456799998 79999999997 89999998754
No 97
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.12 E-value=0.0077 Score=66.76 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=71.5
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.+|||++|....+.+++.++.... ....+..++ ....++.|++ ++..||+|+ .
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~-------------~v~~lh~~~---R~~~~~~f~~------g~~~iLVaT--~ 244 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK-------------KVIQLNRKS---YDTEYPKCKN------GDWDFVITT--D 244 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------------CEEEESTTC---CCCCGGGSSS------CCCSEEEES--S
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC-------------cEEecCHHH---HHHHHhhccC------CCceEEEEC--C
Confidence 478999999999999999998875421 111222221 2234455543 457899998 7
Q ss_pred ccccccccCCCCceEEEEEccCCCCCCCHHHHHHHHHHHHHhhccCCCccccccccCCcchhHHHHHHHHHHHhcCcccc
Q 004379 595 KVSEGLDFADHAGRAVVITGMPFATMTDPKVRLKREYLDLQAQSQGGEYKETKLSFLSGEDWYNQQASRAVNQAVGRVIR 674 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~k~~~l~~~~~~~f~~~~~~~~~~l~~~~~y~~~a~~~~~QaiGRlIR 674 (758)
.+.+|||+|+ +.||-.|..+.+..+ | + +...+. ..|-.|.....+.|.+||.=|
T Consensus 245 v~~~GiDip~---~~VI~~G~~~~~~~~--------~-~--~~~~~~------------~~~d~p~s~~~~~QR~GRaGR 298 (459)
T 2z83_A 245 ISEMGANFGA---SRVIDCRKSVKPTIL--------E-E--GEGRVI------------LGNPSPITSASAAQRRGRVGR 298 (459)
T ss_dssp CC---CCCSC---SEEEECCEECCEEEE--------C-S--SSCEEE------------ECSCEECCHHHHHHHHTTSSC
T ss_pred hHHhCeecCC---CEEEECCcccccccc--------c-c--cccccc------------cccCCCCCHHHHHHhccccCC
Confidence 9999999998 789988855432110 0 0 000000 000123335668899999999
Q ss_pred CCC-CeEEEEEeec
Q 004379 675 HRH-DYGAIIFCDE 687 (758)
Q Consensus 675 ~~~-D~g~villD~ 687 (758)
... .-.+++++.+
T Consensus 299 ~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 299 NPNQVGDEYHYGGA 312 (459)
T ss_dssp CTTCCCEEEEECSC
T ss_pred CCCCCCeEEEEEcc
Confidence 875 3334555544
No 98
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=96.07 E-value=0.011 Score=67.96 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=48.6
Q ss_pred HHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeEEEeCCccchHH
Q 004379 29 IQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLR 108 (758)
Q Consensus 29 ~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIi~~trT~sql~ 108 (758)
...+.+++.+++.||||||||++|+.|+|......+ ++++|.++|..+..
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~------------------------------~~vLvl~PtreLa~ 229 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRR------------------------------LRTLILAPTRVVAA 229 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------------------------CCEEEEESSHHHHH
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC------------------------------CeEEEEcChHHHHH
Confidence 667788999999999999999999999987654322 57999999999999
Q ss_pred HHHHHhh
Q 004379 109 QVIQELK 115 (758)
Q Consensus 109 Q~i~eLk 115 (758)
|+.+.++
T Consensus 230 Qi~~~l~ 236 (618)
T 2whx_A 230 EMEEALR 236 (618)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 9988775
No 99
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.03 E-value=0.015 Score=65.75 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhhc-CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHH-HHHhcCCCCeeC-CCCCCChHHHHHHHHHH
Q 004379 501 KQELGNTIVNIARIV-PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIW-ERICKHKKPVVE-PRQSSLFPLAIEDYMAK 577 (758)
Q Consensus 501 ~~~l~~~i~~~~~~~-~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~-~~l~~~k~~~~e-~~~~~~~~~~i~~~~~~ 577 (758)
...+.+.|.+..... ++.+|||+++....+.+.+.+....... .+. ..+.......+. .-...+..++++.|++
T Consensus 373 ~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~- 449 (555)
T 3tbk_A 373 LRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALS--FLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA- 449 (555)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGT--TCCEEECCC-------------------------
T ss_pred HHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcC--ceeeeEEEecCCcccccccCHHHHHHHHHHHhc-
Confidence 355666666665443 4789999999999999999987642100 000 000000000000 0112345667788874
Q ss_pred hccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 578 LKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 578 i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
+ ++-.||+|+ ..++||||+|+ ++.||...+|.
T Consensus 450 ---~-g~~~vLvaT--~~~~~GlDlp~--v~~VI~~d~p~ 481 (555)
T 3tbk_A 450 ---S-GDNNILIAT--SVADEGIDIAE--CNLVILYEYVG 481 (555)
T ss_dssp ------CCSEEEEC--CCTTCCEETTS--CSEEEEESCCS
T ss_pred ---C-CCeeEEEEc--chhhcCCcccc--CCEEEEeCCCC
Confidence 1 235799988 89999999995 89999999876
No 100
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=95.99 E-value=0.04 Score=56.25 Aligned_cols=96 Identities=10% Similarity=0.022 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhcc
Q 004379 502 QELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKD 580 (758)
Q Consensus 502 ~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~ 580 (758)
..+.+.|.++.. .+..+|||..+-..++.+...+.... ......+.+..+ .+..++++.|++
T Consensus 99 ~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~------------g~~~~~l~G~~~~~~R~~~i~~F~~---- 161 (271)
T 1z5z_A 99 IRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKEL------------NTEVPFLYGELSKKERDDIISKFQN---- 161 (271)
T ss_dssp HHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHH------------CSCCCEECTTSCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhc------------CCcEEEEECCCCHHHHHHHHHHhcC----
Confidence 455555555543 45689999999999998888776420 112233333322 357778889986
Q ss_pred CCCCCeEEEEEecCccccccccCCCCceEEEEEccCCC
Q 004379 581 TSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPFA 618 (758)
Q Consensus 581 ~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp 618 (758)
+.....+|+++ ...++|+|+++ +..||+..+|+-
T Consensus 162 ~~~~~v~L~st--~~~g~Glnl~~--a~~VI~~d~~wn 195 (271)
T 1z5z_A 162 NPSVKFIVLSV--KAGGFGINLTS--ANRVIHFDRWWN 195 (271)
T ss_dssp CTTCCEEEEEC--CTTCCCCCCTT--CSEEEECSCCSC
T ss_pred CCCCCEEEEeh--hhhcCCcCccc--CCEEEEECCCCC
Confidence 11112366666 78899999986 799999998873
No 101
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.98 E-value=0.0032 Score=72.25 Aligned_cols=72 Identities=14% Similarity=-0.049 Sum_probs=48.4
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEecC
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVCRG 594 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~~g 594 (758)
.++.+|||+++.+..+.+++.|++... +-..+-.+-.. ++++ + .+..||+|+ .
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~-------------~v~~lHG~l~q------~er~----~--~~~~VLVAT--d 447 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI-------------NAVAYYRGLDV------SVIP----T--IGDVVVVAT--D 447 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC-------------CEEEECTTSCG------GGSC----S--SSCEEEEEC--T
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC-------------cEEEecCCCCH------HHHH----h--CCCcEEEEC--C
Confidence 467899999999999999998876421 11122221111 0121 1 335899999 8
Q ss_pred ccccccccCCCCceEEEEEccC
Q 004379 595 KVSEGLDFADHAGRAVVITGMP 616 (758)
Q Consensus 595 ~~~EGiD~~~~~~r~vii~glP 616 (758)
-+..|||++ .+.||..|+.
T Consensus 448 VaerGIDId---V~~VI~~Gl~ 466 (666)
T 3o8b_A 448 ALMTGYTGD---FDSVIDCNTC 466 (666)
T ss_dssp THHHHCCCC---BSEEEECCEE
T ss_pred hHHccCCCC---CcEEEecCcc
Confidence 999999973 8999977743
No 102
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.95 E-value=0.016 Score=67.19 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHHHHHHHhcc
Q 004379 502 QELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIEDYMAKLKD 580 (758)
Q Consensus 502 ~~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~~~~~~i~~ 580 (758)
..+...|..... .++.+|||++|....+.+.+.+.+... +..++... ...+..++++.|+.
T Consensus 426 ~~Ll~~l~~~~~-~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------~~~~lh~~~~~~~R~~~~~~f~~---- 487 (664)
T 1c4o_A 426 LDLMEGIRERAA-RGERTLVTVLTVRMAEELTSFLVEHGI-------------RARYLHHELDAFKRQALIRDLRL---- 487 (664)
T ss_dssp HHHHHHHHHHHH-TTCEEEEECSSHHHHHHHHHHHHHTTC-------------CEEEECTTCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHhcCC-------------CceeecCCCCHHHHHHHHHHhhc----
Confidence 334444544432 456899999999999999998876421 11122221 12345567777764
Q ss_pred CCCCCeEEEEEecCccccccccCCCCceEEEEEccC
Q 004379 581 TSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMP 616 (758)
Q Consensus 581 ~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glP 616 (758)
++-.||+|+ ..+.+|+|+|+ ++.||+...+
T Consensus 488 --g~~~VLvaT--~~l~~GlDip~--v~lVI~~d~d 517 (664)
T 1c4o_A 488 --GHYDCLVGI--NLLREGLDIPE--VSLVAILDAD 517 (664)
T ss_dssp --TSCSEEEES--CCCCTTCCCTT--EEEEEETTTT
T ss_pred --CCceEEEcc--ChhhcCccCCC--CCEEEEeCCc
Confidence 345799998 79999999997 8899999864
No 103
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.78 E-value=0.011 Score=69.46 Aligned_cols=92 Identities=10% Similarity=0.075 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhhcCCcEEEEeccHH--------HHHHHHHHHhc-CCCCCchhHHHHHhcCCCCeeCCC-CCCChHHHHH
Q 004379 503 ELGNTIVNIARIVPDGLLIFFPSYY--------LMDQCIACWKN-TSHGNLTTIWERICKHKKPVVEPR-QSSLFPLAIE 572 (758)
Q Consensus 503 ~l~~~i~~~~~~~~g~~lv~f~Sy~--------~l~~v~~~~~~-~~~~~~~~i~~~l~~~k~~~~e~~-~~~~~~~~i~ 572 (758)
.+.+.|.+.+. .++.++||+|+.+ ..+.+++.|.. ..++ .+..++-.+ ...+..++++
T Consensus 566 ~l~~~i~~~l~-~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~-----------~~v~~lHG~m~~~eR~~v~~ 633 (780)
T 1gm5_A 566 EVYEFVRQEVM-RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPE-----------FKLGLMHGRLSQEEKDRVML 633 (780)
T ss_dssp HHHHHHHHHTT-TSCCBCCBCCCC--------CHHHHHHHSGGGSCC--------------CBCCCCSSSCCSCSHHHHH
T ss_pred HHHHHHHHHHh-cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCC-----------CcEEEEeCCCCHHHHHHHHH
Confidence 34444544442 3567899998553 35556666654 2111 011222222 2345778889
Q ss_pred HHHHHhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccC
Q 004379 573 DYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMP 616 (758)
Q Consensus 573 ~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glP 616 (758)
.|++ ++-.||+|+ ..+.+|||+|+ ++.||+...|
T Consensus 634 ~F~~------G~~~ILVaT--~vie~GIDiP~--v~~VIi~d~~ 667 (780)
T 1gm5_A 634 EFAE------GRYDILVST--TVIEVGIDVPR--ANVMVIENPE 667 (780)
T ss_dssp HHTT------TSSSBCCCS--SCCCSCSCCTT--CCEEEBCSCS
T ss_pred HHHC------CCCeEEEEC--CCCCccccCCC--CCEEEEeCCC
Confidence 9975 456899998 79999999998 7888887755
No 104
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.76 E-value=0.021 Score=69.11 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhh-cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCee-CCCCCCChHHHHHHHHHHhc
Q 004379 502 QELGNTIVNIARI-VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV-EPRQSSLFPLAIEDYMAKLK 579 (758)
Q Consensus 502 ~~l~~~i~~~~~~-~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~-e~~~~~~~~~~i~~~~~~i~ 579 (758)
..+.+.|.+.... .++.+|||+++...++.+...+.......+... ..+.......+ -.-...+..++++.|++
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~-~~l~G~~~~~~hg~m~~~eR~~il~~Fr~--- 691 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP-GVLMGRGRRDQTTGMTLPSQKGVLDAFKT--- 691 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCC-EEC-----------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccce-eEEecCCCcccCCCCCHHHHHHHHHHhhc---
Confidence 4555666554432 346899999999999999999876410000000 00000000000 00112345667788874
Q ss_pred cCCCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 580 DTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 580 ~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
+ ++-.||+|+ ..+.||||+|+ +..||...+|.
T Consensus 692 -~-g~~~VLVaT--~~~~eGIDlp~--v~~VI~yD~p~ 723 (936)
T 4a2w_A 692 -S-KDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (936)
T ss_dssp ----CCSEEEEE--CC------CCC--CSEEEEESCCS
T ss_pred -c-CCeeEEEEe--CchhcCCcchh--CCEEEEeCCCC
Confidence 1 234699999 79999999998 89999998764
No 105
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.70 E-value=0.035 Score=66.05 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhh-cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCee-CCCCCCChHHHHHHHHHHh
Q 004379 501 KQELGNTIVNIARI-VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVV-EPRQSSLFPLAIEDYMAKL 578 (758)
Q Consensus 501 ~~~l~~~i~~~~~~-~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~-e~~~~~~~~~~i~~~~~~i 578 (758)
...+.+.|.+.... .++.+|||+++...++.+...++......+... ..+.......+ -+-...+..++++.|++
T Consensus 615 ~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~-~~l~G~~~~~~hg~~~~~eR~~~l~~F~~-- 691 (797)
T 4a2q_A 615 LEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKP-GVLMGRGRRDQTTGMTLPSQKGVLDAFKT-- 691 (797)
T ss_dssp HHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCC-EEC----------------------------
T ss_pred HHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccc-eEEEecCCcccCCCCCHHHHHHHHHHhhc--
Confidence 35566666654433 346899999999999999999876310000000 00000000000 00112345667888875
Q ss_pred ccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 579 KDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 579 ~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
.++-.||+|+ ..+.+|||+|+ ++.||...+|.
T Consensus 692 ---~g~~~vLVaT--~~~~~GIDlp~--v~~VI~yd~p~ 723 (797)
T 4a2q_A 692 ---SKDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (797)
T ss_dssp -----CCSEEEEE--CC-------CC--CSEEEEESCCS
T ss_pred ---cCCceEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 1245699999 79999999997 89999988764
No 106
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.61 E-value=0.037 Score=60.87 Aligned_cols=56 Identities=21% Similarity=0.178 Sum_probs=47.1
Q ss_pred HHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeEEEeCCccchHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQV 110 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIi~~trT~sql~Q~ 110 (758)
++.+++++++.||||+|||++|+.|++......+ ++++|.++|..+..|.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~------------------------------~~~lil~Ptr~La~Q~ 53 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR------------------------------LRTLVLAPTRVVLSEM 53 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTT------------------------------CCEEEEESSHHHHHHH
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC------------------------------CeEEEEcchHHHHHHH
Confidence 4677899999999999999999999887554322 5799999999999999
Q ss_pred HHHhhc
Q 004379 111 IQELKT 116 (758)
Q Consensus 111 i~eLkk 116 (758)
.+.++.
T Consensus 54 ~~~l~~ 59 (440)
T 1yks_A 54 KEAFHG 59 (440)
T ss_dssp HHHTTT
T ss_pred HHHHhc
Confidence 988864
No 107
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.57 E-value=0.032 Score=61.71 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHHHhcCC-ceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCe
Q 004379 18 YDCQLVYMEKVIQSLQNKC-NALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPT 96 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~-~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 96 (758)
-+.|++....+.+.+.+++ +++|.||.|||||.. |...+.++...+. .+
T Consensus 27 n~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~~-----------------------------~~ 76 (459)
T 3upu_A 27 TEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTGE-----------------------------TG 76 (459)
T ss_dssp CHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTTC-----------------------------CC
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcCC-----------------------------ce
Confidence 4789999999999998876 999999999999963 3444555554331 36
Q ss_pred EEEeCCccchHHHH
Q 004379 97 ILYTSRTHSQLRQV 110 (758)
Q Consensus 97 Ii~~trT~sql~Q~ 110 (758)
|+.+|.|....+.+
T Consensus 77 il~~a~T~~Aa~~l 90 (459)
T 3upu_A 77 IILAAPTHAAKKIL 90 (459)
T ss_dssp EEEEESSHHHHHHH
T ss_pred EEEecCcHHHHHHH
Confidence 88888887665443
No 108
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.55 E-value=0.025 Score=65.50 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=52.2
Q ss_pred CCHHHH-----HHHHHHH--HHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCC
Q 004379 17 AYDCQL-----VYMEKVI--QSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQS 89 (758)
Q Consensus 17 ~r~~Q~-----~~~~~i~--~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (758)
|.+.|. +.+..+. +++.+++.+++.||||+|||++|+.|++......+
T Consensus 216 pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~------------------------- 270 (673)
T 2wv9_A 216 VSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR------------------------- 270 (673)
T ss_dssp EEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT-------------------------
T ss_pred cCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC-------------------------
Confidence 456666 4433333 34458899999999999999999999886544322
Q ss_pred CCCCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 90 GDSKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 90 ~~~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
++++|.++|..+..|..+.++.+
T Consensus 271 -----~~~lilaPTr~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 271 -----LRTAVLAPTRVVAAEMAEALRGL 293 (673)
T ss_dssp -----CCEEEEESSHHHHHHHHHHTTTS
T ss_pred -----CcEEEEccHHHHHHHHHHHHhcC
Confidence 57899999999999998887643
No 109
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.51 E-value=0.049 Score=60.85 Aligned_cols=73 Identities=18% Similarity=0.104 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSK 93 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (758)
..++||.|++.+..+......+..+++-+|||+|||+..+.. +......+. .
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~-i~~~~~~~~---------------------------~ 86 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAV-FSDAKKENE---------------------------L 86 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHH-HHHHHHTTC---------------------------C
T ss_pred hccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHH-HHHHHhcCC---------------------------C
Confidence 345899999999888887788889999999999999998754 333332221 2
Q ss_pred CCeEEEeCCccchHHHHHHHhhc
Q 004379 94 LPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 94 ~~kIi~~trT~sql~Q~i~eLkk 116 (758)
.+.+|+|. + +++.|+.+|+++
T Consensus 87 ~~~LIv~P-~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 87 TPSLVICP-L-SVLKNWEEELSK 107 (500)
T ss_dssp SSEEEEEC-S-TTHHHHHHHHHH
T ss_pred CCEEEEcc-H-HHHHHHHHHHHH
Confidence 24455554 4 578899888875
No 110
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.40 E-value=0.021 Score=66.14 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=37.5
Q ss_pred cCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeEEEeCCccchHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQLRQVIQE 113 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIi~~trT~sql~Q~i~e 113 (758)
+++.+++.||||+|||+ +++..+... ++.+|+++|..+..|+.+.
T Consensus 154 ~rk~vlv~apTGSGKT~----~al~~l~~~-------------------------------~~gl~l~PtR~LA~Qi~~~ 198 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTY----HAIQKYFSA-------------------------------KSGVYCGPLKLLAHEIFEK 198 (677)
T ss_dssp CCEEEEEECCTTSSHHH----HHHHHHHHS-------------------------------SSEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHH----HHHHHHHhc-------------------------------CCeEEEeCHHHHHHHHHHH
Confidence 56889999999999999 333333322 2458889999999999988
Q ss_pred hhcCC
Q 004379 114 LKTSN 118 (758)
Q Consensus 114 Lkkl~ 118 (758)
+++.+
T Consensus 199 l~~~g 203 (677)
T 3rc3_A 199 SNAAG 203 (677)
T ss_dssp HHHTT
T ss_pred HHhcC
Confidence 87643
No 111
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.18 E-value=0.05 Score=63.51 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhc-CCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeC---------CCCCCChHHH
Q 004379 501 KQELGNTIVNIARIV-PDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVE---------PRQSSLFPLA 570 (758)
Q Consensus 501 ~~~l~~~i~~~~~~~-~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e---------~~~~~~~~~~ 570 (758)
...+.+.|.+..... ++.+|||+++....+.+++.++...... ..+...+. .-...+..++
T Consensus 382 ~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~---------~~~~~~l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 382 LEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS---------FLKPGILTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp HHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCC---------SCCEEC---------------------
T ss_pred HHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCcc---------ccceeEEEccCCCccccCCCHHHHHHH
Confidence 345555555544323 4579999999999999999987653100 00000110 1112335566
Q ss_pred HHHHHHHhccCCCCCeEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 571 IEDYMAKLKDTSTSGAVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 571 i~~~~~~i~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
+++|++ .++-.||+|+ ..+.+|||+|+ ++.||..++|.
T Consensus 453 ~~~F~~-----~g~~~vLVaT--~v~~~GiDip~--v~~VI~~d~p~ 490 (696)
T 2ykg_A 453 LDAFKA-----SGDHNILIAT--SVADEGIDIAQ--CNLVILYEYVG 490 (696)
T ss_dssp -------------CCSCSEEE--ESSCCC---CC--CSEEEEESCC-
T ss_pred HHHHHh-----cCCccEEEEe--chhhcCCcCcc--CCEEEEeCCCC
Confidence 777764 0245789999 79999999998 89999998874
No 112
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.11 E-value=0.024 Score=65.04 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccCCCchH--HHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCe
Q 004379 19 DCQLVYMEKVIQSLQNKCNALLESPTGTGKT--LCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPT 96 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~~~~liEAPTGTGKT--layL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 96 (758)
+.|++.+..+. +++.+++.+|+||||| ++.+++++.-.. .. ...+
T Consensus 152 ~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~--~~---------------------------~~~~ 198 (608)
T 1w36_D 152 NWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMA--DG---------------------------ERCR 198 (608)
T ss_dssp CHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTC--SS---------------------------CCCC
T ss_pred HHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhh--hc---------------------------CCCe
Confidence 56887765543 5789999999999999 777777664210 00 2257
Q ss_pred EEEeCCccchHHHHHHHhh
Q 004379 97 ILYTSRTHSQLRQVIQELK 115 (758)
Q Consensus 97 Ii~~trT~sql~Q~i~eLk 115 (758)
|++++.|.....++-+.+.
T Consensus 199 vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 199 IRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp EEEEBSSHHHHHHHHHHHT
T ss_pred EEEEeCChhHHHHHHHHHH
Confidence 9999999988877765543
No 113
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.86 E-value=0.051 Score=65.84 Aligned_cols=72 Identities=19% Similarity=0.088 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 13 Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
.++++||.|.+.+..+.. ..+..+++-+|||+|||+.++..+...... +.
T Consensus 150 ~~~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~--------------------------- 199 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLS-GA--------------------------- 199 (968)
T ss_dssp CSSCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SS---------------------------
T ss_pred CCCCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CC---------------------------
Confidence 457899999998877654 234678999999999999998765543332 21
Q ss_pred CCCeEEEeCCccchHHHHHHHhhc
Q 004379 93 KLPTILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLkk 116 (758)
..+++|.++| +++.|...|+++
T Consensus 200 -~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 200 -AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp -CCCEEEECCT-TTHHHHHHHHHH
T ss_pred -CCeEEEEeCH-HHHHHHHHHHHH
Confidence 1367888888 889999998854
No 114
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=94.54 E-value=0.15 Score=58.93 Aligned_cols=81 Identities=11% Similarity=0.079 Sum_probs=53.9
Q ss_pred cCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhccCCCCC--eEEEEE
Q 004379 515 VPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKDTSTSG--AVFFAV 591 (758)
Q Consensus 515 ~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~~~~~~--~vL~~v 591 (758)
.+..+|||..+-..++.+...+.... .....+.+..+ .+..+++++|++ + ..+ .+|+++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g-------------~~~~~l~G~~~~~~R~~~i~~F~~----~-~~~~~v~L~st 476 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRR-------------YLYVRLDGTMSIKKRAKIVERFNN----P-SSPEFIFMLSS 476 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHT-------------CCEEEECSSCCHHHHHHHHHHHHS----T-TCCCCEEEEEG
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCC-------------CCEEEEeCCCCHHHHHHHHHHhcC----C-CCCcEEEEEec
Confidence 45678998888888888887775431 11223333222 346678888874 2 112 366666
Q ss_pred ecCccccccccCCCCceEEEEEccCC
Q 004379 592 CRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 592 ~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
....+|+|+++ +..||+..+|+
T Consensus 477 --~a~g~Glnl~~--a~~Vi~~d~~w 498 (644)
T 1z3i_X 477 --KAGGCGLNLIG--ANRLVMFDPDW 498 (644)
T ss_dssp --GGSCTTCCCTT--EEEEEECSCCS
T ss_pred --ccccCCccccc--CCEEEEECCCC
Confidence 78899999987 88999988775
No 115
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.069 Score=63.43 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=58.8
Q ss_pred HHHHHHHHHhhhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCC-CChHHHHHHHHHHhccC
Q 004379 503 ELGNTIVNIARIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQS-SLFPLAIEDYMAKLKDT 581 (758)
Q Consensus 503 ~l~~~i~~~~~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~-~~~~~~i~~~~~~i~~~ 581 (758)
.+.+.|..+. ..+..+|||...-..++.+...+...+ .....+.+..+ .+..++++.|+. +
T Consensus 560 ~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g-------------~~~~~i~G~~~~~eR~~~i~~F~~----~ 621 (800)
T 3mwy_W 560 LLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKG-------------INFQRLDGTVPSAQRRISIDHFNS----P 621 (800)
T ss_dssp HHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHT-------------CCCEEESTTSCHHHHHHHHHTTSS----T
T ss_pred HHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCC-------------CCEEEEeCCCCHHHHHHHHHHhhC----C
Confidence 3444444433 345689999999999999888876432 12233333322 345566666653 2
Q ss_pred CCCC--eEEEEEecCccccccccCCCCceEEEEEccCC
Q 004379 582 STSG--AVFFAVCRGKVSEGLDFADHAGRAVVITGMPF 617 (758)
Q Consensus 582 ~~~~--~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 617 (758)
..+ .+|+++ ....+|||+++ +..||+...|+
T Consensus 622 -~~~~~v~LlSt--~agg~GlNL~~--a~~VI~~D~~w 654 (800)
T 3mwy_W 622 -DSNDFVFLLST--RAGGLGINLMT--ADTVVIFDSDW 654 (800)
T ss_dssp -TCSCCCEEEEH--HHHTTTCCCTT--CCEEEESSCCS
T ss_pred -CCCceEEEEec--ccccCCCCccc--cceEEEecCCC
Confidence 122 466666 68899999997 88999988775
No 116
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=92.71 E-value=0.2 Score=57.98 Aligned_cols=70 Identities=23% Similarity=0.264 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC-ceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKC-NALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~-~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
||+|.+.|-+.+..+.+.+..|. +.++-+.||+|||+.+ +.+. ...++
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~--a~~~--~~~~~--------------------------- 54 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTM--AKVI--EALGR--------------------------- 54 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH--HHHH--HHHTC---------------------------
T ss_pred CCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHH--HHHH--HHhCC---------------------------
Confidence 57888999999999999998884 5678899999999955 3332 12121
Q ss_pred CCCeEEEeCCccchHHHHHHHhhcC
Q 004379 93 KLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
| +++.|++..+..|+..+|+..
T Consensus 55 --~-~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 55 --P-ALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp --C-EEEEESSHHHHHHHHHHHHHH
T ss_pred --C-EEEEecCHHHHHHHHHHHHHH
Confidence 4 777788889999999999875
No 117
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=92.56 E-value=0.72 Score=55.85 Aligned_cols=42 Identities=19% Similarity=0.043 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHHHHHhhh---------cCCcEEEEeccHHHHHHHHHHHhc
Q 004379 497 SIEYKQELGNTIVNIARI---------VPDGLLIFFPSYYLMDQCIACWKN 538 (758)
Q Consensus 497 ~~~~~~~l~~~i~~~~~~---------~~g~~lv~f~Sy~~l~~v~~~~~~ 538 (758)
++..+..+++.|.+.... .+++++||++|......+++.+.+
T Consensus 509 ~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~ 559 (1038)
T 2w00_A 509 HPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKR 559 (1038)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHh
Confidence 344456666666554322 234699999999999999888764
No 118
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.72 E-value=0.13 Score=46.80 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 23 VYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 23 ~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
++.+.+..+...+.++++.+|+|||||. |.-++.
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~--lA~~i~ 45 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMT--GARYLH 45 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHH--HHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHH--HHHHHH
Confidence 3444444555677899999999999998 444553
No 119
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.67 E-value=0.13 Score=46.73 Aligned_cols=27 Identities=11% Similarity=0.113 Sum_probs=20.9
Q ss_pred HHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 24 YMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 24 ~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
+.+.+..+...+.++++.+|+|||||.
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHH
Confidence 444444555667899999999999997
No 120
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=91.44 E-value=0.21 Score=57.58 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=46.1
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeE
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTI 97 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI 97 (758)
-+.|++.+. ..+++++|.||.|||||..++.- ++|....+. ....+|
T Consensus 11 n~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~r-i~~l~~~~~--------------------------~~~~~i 57 (647)
T 3lfu_A 11 NDKQREAVA------APRSNLLVLAGAGSGKTRVLVHR-IAWLMSVEN--------------------------CSPYSI 57 (647)
T ss_dssp CHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHH-HHHHHHTSC--------------------------CCGGGE
T ss_pred CHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHH-HHHHHHhCC--------------------------CChhhE
Confidence 477887775 24688999999999999977655 445544321 012379
Q ss_pred EEeCCccchHHHHHHHhhc
Q 004379 98 LYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 98 i~~trT~sql~Q~i~eLkk 116 (758)
+++|-|+....++-+.+.+
T Consensus 58 L~ltft~~aa~e~~~rl~~ 76 (647)
T 3lfu_A 58 MAVTFTNKAAAEMRHRIGQ 76 (647)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHHHHHH
Confidence 9999998887776665554
No 121
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.43 E-value=0.1 Score=54.74 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 17 AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..-+|.+.+..+..++..++++++.+|+|||||. |+-+++
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~--la~~la 67 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGGHILLEGVPGLAKTL--SVNTLA 67 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHH--HHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHH--HHHHHH
Confidence 3457888899999999999999999999999998 444554
No 122
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.09 E-value=0.22 Score=47.84 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhcC------CceEEeccCCCchHHHHHHHHHH
Q 004379 19 DCQLVYMEKVIQSLQNK------CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~------~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.|.+.+..+.+.+.+. .++++.+|+|||||. |+-+++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~--la~~i~ 75 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTY--LLAAIA 75 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHH--HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHH--HHHHHH
Confidence 36777777777777755 789999999999998 444454
No 123
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.65 E-value=0.48 Score=54.71 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=57.7
Q ss_pred eeecCCCCCCHHHHHHHHHHHHHHhcCC-ceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCC
Q 004379 9 IDVEFPFEAYDCQLVYMEKVIQSLQNKC-NALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSS 87 (758)
Q Consensus 9 i~~~Fpf~~r~~Q~~~~~~i~~al~~~~-~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (758)
..+.=||+|+.-|.+-+..+.+.+..+. +.++-+-||+|||+.. +.+. ...++
T Consensus 5 ~~~~~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~--a~~~--~~~~~---------------------- 58 (661)
T 2d7d_A 5 FELVSKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV--SNLI--KEVNK---------------------- 58 (661)
T ss_dssp CCCCCSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH--HHHH--HHHCC----------------------
T ss_pred ceeecCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH--HHHH--HHhCC----------------------
Confidence 3455689999999999999999998884 5678899999999843 4342 22121
Q ss_pred CCCCCCCCeEEEeCCccchHHHHHHHhhcC
Q 004379 88 QSGDSKLPTILYTSRTHSQLRQVIQELKTS 117 (758)
Q Consensus 88 ~~~~~~~~kIi~~trT~sql~Q~i~eLkkl 117 (758)
| +++.|++..+..|+..+|+..
T Consensus 59 -------~-~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 59 -------P-TLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp -------C-EEEECSSHHHHHHHHHHHHHH
T ss_pred -------C-EEEEECCHHHHHHHHHHHHHH
Confidence 3 777888889999999999875
No 124
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.36 E-value=0.5 Score=53.52 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHH
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLC 51 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTla 51 (758)
++..-+.|++.+..+. +++.+++.+|.|||||..
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~ 220 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTT 220 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHH
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHH
Confidence 5555689988776653 568999999999999964
No 125
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=90.24 E-value=0.63 Score=49.76 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 13 Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
.||.+.|.|+.++..+. ..+.++++.|-+.|||.....-++.++...
T Consensus 160 ~p~~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~----------------------------- 206 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN----------------------------- 206 (385)
T ss_dssp EECCCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS-----------------------------
T ss_pred CCCCCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC-----------------------------
Confidence 57889999999988763 346799999999999986554444333321
Q ss_pred CCCeEEEeCCccchHHHHHHHhh
Q 004379 93 KLPTILYTSRTHSQLRQVIQELK 115 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLk 115 (758)
....|++++.|..|.+.+++.++
T Consensus 207 ~g~~v~~vA~t~~qA~~vf~~i~ 229 (385)
T 2o0j_A 207 KDKAVGILAHKGSMSAEVLDRTK 229 (385)
T ss_dssp SSCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHH
Confidence 12478999999999887776554
No 126
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=90.05 E-value=0.63 Score=53.04 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCC
Q 004379 13 FPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDS 92 (758)
Q Consensus 13 Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (758)
.||++.|.|+.++..+ ...+..+++.|-|+|||.....-++.++...+
T Consensus 160 ~~~~l~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~---------------------------- 207 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK---------------------------- 207 (592)
T ss_dssp BBCCCCHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS----------------------------
T ss_pred ccCcCCHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC----------------------------
Confidence 6788999999999877 23577999999999999965544333332211
Q ss_pred CCCeEEEeCCccchHHHHHHHhh
Q 004379 93 KLPTILYTSRTHSQLRQVIQELK 115 (758)
Q Consensus 93 ~~~kIi~~trT~sql~Q~i~eLk 115 (758)
...|++++.|..|.+.++..++
T Consensus 208 -~~~i~~va~t~~qA~~~~~~i~ 229 (592)
T 3cpe_A 208 -DKAVGILAHKGSMSAEVLDRTK 229 (592)
T ss_dssp -SCEEEEEESSHHHHHHHHHHHH
T ss_pred -CCeEEEEECCHHHHHHHHHHHH
Confidence 2479999999999888876554
No 127
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.92 E-value=0.15 Score=56.65 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 19 DCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
-+|.+.++.+..++..+.++++++|+|||||. |+-+++
T Consensus 25 vGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~--LAraLa 62 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGESVFLLGPPGIAKSL--IARRLK 62 (500)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECCSSSSHHH--HHHHGG
T ss_pred HHHHHHHHHHHHHHhcCCeeEeecCchHHHHH--HHHHHH
Confidence 46888899999999999999999999999998 545554
No 128
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=89.77 E-value=5.6 Score=46.39 Aligned_cols=132 Identities=16% Similarity=0.041 Sum_probs=72.7
Q ss_pred cccEEEEecccCCC-hHhHHhhhCCCCCccccCCccccCCCeEEEEeecCCCCcceeeeccccCCHHHHHHHHHHHHHHh
Q 004379 434 EVGSIILTSGTLSP-MDSFAQELKLNFPLRVENPHVITSKQIWAGIVPVGPSGYLLNSSYRNRDSIEYKQELGNTIVNIA 512 (758)
Q Consensus 434 ~~~~vil~SaTL~p-~~~f~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~r~~~~~~~~l~~~i~~~~ 512 (758)
.+..+.-|+||+.. .+.|....|++.. . .|.-.+..+. +.+ ..-|. +..+-...+.+.|.+..
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv-~--IPtn~p~~R~------d~~-----d~v~~--~~~~K~~al~~~i~~~~ 438 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTV-V--VPTNRPMIRK------DLP-----DLVYM--TEAEKIQAIIEDIKERT 438 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEE-E--CCCSSCCCCE------ECC-----CEEES--SHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEE-E--cCCCCCceee------cCC-----cEEEe--CHHHHHHHHHHHHHHHh
Confidence 56789999999986 3567888887631 1 1111110000 000 00111 12233355555554432
Q ss_pred hhcCCcEEEEeccHHHHHHHHHHHhcCCCCCchhHHHHHhcCCCCeeCCCCCCChHHHHHHHHHHhccCCCCCeEEEEEe
Q 004379 513 RIVPDGLLIFFPSYYLMDQCIACWKNTSHGNLTTIWERICKHKKPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFFAVC 592 (758)
Q Consensus 513 ~~~~g~~lv~f~Sy~~l~~v~~~~~~~~~~~~~~i~~~l~~~k~~~~e~~~~~~~~~~i~~~~~~i~~~~~~~~vL~~v~ 592 (758)
..+..+|||++|.+.-+.+...|++.+. +..++..+.. ... +..+......|+|++|+
T Consensus 439 -~~gqpvLVft~sie~se~Ls~~L~~~gi-------------~~~vLnak~~-~rE------a~iia~agr~G~VtIAT- 496 (853)
T 2fsf_A 439 -AKGQPVLVGTISIEKSELVSNELTKAGI-------------KHNVLNAKFH-ANE------AAIVAQAGYPAAVTIAT- 496 (853)
T ss_dssp -TTTCCEEEEESSHHHHHHHHHHHHHTTC-------------CCEECCTTCH-HHH------HHHHHTTTSTTCEEEEE-
T ss_pred -cCCCCEEEEECcHHHHHHHHHHHHHCCC-------------CEEEecCChh-HHH------HHHHHhcCCCCeEEEec-
Confidence 2345699999999999999998876531 1122222211 111 11111112357999999
Q ss_pred cCccccccccCC
Q 004379 593 RGKVSEGLDFAD 604 (758)
Q Consensus 593 ~g~~~EGiD~~~ 604 (758)
.-.+.|+|++.
T Consensus 497 -nmAgRGtDI~l 507 (853)
T 2fsf_A 497 -NMAGRGTDIVL 507 (853)
T ss_dssp -SCCSSCSCCCT
T ss_pred -ccccCCcCccC
Confidence 78899999986
No 129
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=89.73 E-value=0.78 Score=52.56 Aligned_cols=54 Identities=22% Similarity=0.120 Sum_probs=41.8
Q ss_pred HHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCeEEEeCCccch
Q 004379 27 KVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPTILYTSRTHSQ 106 (758)
Q Consensus 27 ~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIi~~trT~sq 106 (758)
.+..++.+++.+++.||||+|||.+++.|.+. .+ .+++|.++|..+
T Consensus 224 ~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~----~g------------------------------~~vLVl~PTReL 269 (666)
T 3o8b_A 224 SPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA----QG------------------------------YKVLVLNPSVAA 269 (666)
T ss_dssp SCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH----TT------------------------------CCEEEEESCHHH
T ss_pred HHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH----CC------------------------------CeEEEEcchHHH
Confidence 44556678889999999999999999988663 11 378999999888
Q ss_pred HHHHHHHh
Q 004379 107 LRQVIQEL 114 (758)
Q Consensus 107 l~Q~i~eL 114 (758)
..|+.+.+
T Consensus 270 A~Qia~~l 277 (666)
T 3o8b_A 270 TLGFGAYM 277 (666)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876543
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.98 E-value=0.51 Score=44.36 Aligned_cols=42 Identities=14% Similarity=0.099 Sum_probs=31.3
Q ss_pred CCC-CHHHHHHHHHHHHHHh-----cCCceEEeccCCCchHHHHHHHHHH
Q 004379 15 FEA-YDCQLVYMEKVIQSLQ-----NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 15 f~~-r~~Q~~~~~~i~~al~-----~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
|.+ -+.|.+..+.+.+.+. .++.+++-+|+|||||. |+-+++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTt--L~~~i~ 59 (180)
T 3ec2_A 12 YHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTH--LAVATL 59 (180)
T ss_dssp CCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHH--HHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHH--HHHHHH
Confidence 444 3578888887776663 46889999999999997 555554
No 131
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.75 E-value=0.67 Score=48.02 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhc-----CCceEEeccCCCchHHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQN-----KCNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~-----~~~~liEAPTGTGKTlayL~pal~~ 59 (758)
.+.++...+.+.+.+ +.++++-+|||||||. |+-|++.
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~--La~aia~ 174 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSY--LLAAMAH 174 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHH--HHHHHHH
Confidence 555566666666664 5789999999999998 5445553
No 132
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.49 E-value=0.3 Score=51.86 Aligned_cols=37 Identities=43% Similarity=0.481 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHh-----------------cCCceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQ-----------------NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~-----------------~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|.+.++.+..++. .+.++++.+|+|||||. |+-+++
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~--la~~ia 72 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL--LAETLA 72 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHH--HHHHHH
Confidence 56677777777773 45789999999999999 555554
No 133
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=88.48 E-value=0.51 Score=54.70 Aligned_cols=65 Identities=18% Similarity=0.090 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhh-CCCcccccccccccCCCCCCCCCCCCCCCCCCe
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSL-GSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPT 96 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 96 (758)
-+.|++.+.. .+++++|.||.|||||..+..-+ +|.... +. +..+
T Consensus 4 ~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri-~~ll~~~~~---------------------------~~~~ 49 (673)
T 1uaa_A 4 NPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKI-AHLIRGCGY---------------------------QARH 49 (673)
T ss_dssp CHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHH-HHHHHHHCC---------------------------CGGG
T ss_pred CHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHH-HHHHHhcCC---------------------------CHHH
Confidence 4778887754 36899999999999999776554 444332 21 2247
Q ss_pred EEEeCCccchHHHHHHHhhc
Q 004379 97 ILYTSRTHSQLRQVIQELKT 116 (758)
Q Consensus 97 Ii~~trT~sql~Q~i~eLkk 116 (758)
|++.|-|......+-+.+.+
T Consensus 50 IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 50 IAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp EEEEESSHHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHHHHH
Confidence 99998887776665555543
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.43 E-value=0.3 Score=45.84 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcC--CceEEeccCCCchHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCL 52 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTlay 52 (758)
|+..-++.+.++.+.+.+..+ .++++.+|+|||||...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 344445666777777877655 67999999999999843
No 135
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=88.38 E-value=0.33 Score=45.37 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCceEEeccCCCchHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSLQN--KCNALLESPTGTGKTLCL 52 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~--~~~~liEAPTGTGKTlay 52 (758)
|+..-+|.+.+..+.+.+.. ..++++.+|+|||||...
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 33444566677777777766 467999999999999743
No 136
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.80 E-value=0.35 Score=49.72 Aligned_cols=38 Identities=37% Similarity=0.348 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhc----------------CCceEEeccCCCchHHHHHHHHHH
Q 004379 19 DCQLVYMEKVIQSLQN----------------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~----------------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+|.+.++.+..++.. ..++++.+|+|||||. |+-+++
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~--la~~la 71 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTE--IARRLA 71 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHH--HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHH--HHHHHH
Confidence 3566666666666654 5789999999999998 444454
No 137
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.15 E-value=0.57 Score=49.15 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHhcCC--c-eEEeccCCCchHHHHH
Q 004379 17 AYDCQLVYMEKVIQSLQNKC--N-ALLESPTGTGKTLCLL 53 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~--~-~liEAPTGTGKTlayL 53 (758)
.||.|.+.+..+..++.+++ | .++.+|.|||||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 48999999999999999874 3 8999999999998554
No 138
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.60 E-value=0.33 Score=49.38 Aligned_cols=23 Identities=48% Similarity=0.624 Sum_probs=18.0
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
....+++.+|+|||||. |+-+++
T Consensus 50 ~~~~~ll~G~~GtGKT~--la~~la 72 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTL--LAKAVA 72 (285)
T ss_dssp CCSEEEEESSSSSSHHH--HHHHHH
T ss_pred CCCeEEEECCCCCcHHH--HHHHHH
Confidence 34779999999999998 444553
No 139
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=85.82 E-value=0.93 Score=53.00 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCe
Q 004379 17 AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPT 96 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 96 (758)
.-+.|++.+.. .+++++|.||.|||||..+..- ++|+..... .+..+
T Consensus 12 Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~~--------------------------~~p~~ 58 (724)
T 1pjr_A 12 LNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEKH--------------------------VAPWN 58 (724)
T ss_dssp SCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHH-HHHHHHTTC--------------------------CCGGG
T ss_pred CCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhcC--------------------------CCHHH
Confidence 35788886653 4589999999999999977655 555544211 02247
Q ss_pred EEEeCCccchHHHHHHHhh
Q 004379 97 ILYTSRTHSQLRQVIQELK 115 (758)
Q Consensus 97 Ii~~trT~sql~Q~i~eLk 115 (758)
|++.|-|......+-+.+.
T Consensus 59 IL~vTFTnkAA~Em~~Rl~ 77 (724)
T 1pjr_A 59 ILAITFTNKAAREMRERVQ 77 (724)
T ss_dssp EEEEESSHHHHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHHHHH
Confidence 8999988876555544443
No 140
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.70 E-value=0.63 Score=46.79 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 23 VYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 23 ~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
++.+.+..+...+.++++.+|+|||||. |+-+++
T Consensus 17 ~~~~~~~~~~~~~~~vll~G~~GtGKt~--la~~i~ 50 (265)
T 2bjv_A 17 EVLEQVSHLAPLDKPVLIIGERGTGKEL--IASRLH 50 (265)
T ss_dssp HHHHHHHHHTTSCSCEEEECCTTSCHHH--HHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCcHHH--HHHHHH
Confidence 3444455555667899999999999997 444443
No 141
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=85.61 E-value=0.4 Score=49.43 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhcC-----------CceEEeccCCCchHHHHHHHHHH
Q 004379 19 DCQLVYMEKVIQSLQNK-----------CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~-----------~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+|...++.+..++..+ .++++.+|+|||||.. +-+++
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~l--a~~la 68 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTEL--AKTLA 68 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHH--HHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHH--HHHHH
Confidence 46777777777777664 4799999999999984 34444
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=85.46 E-value=0.38 Score=46.95 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhcCC---ceEEeccCCCchHHH
Q 004379 19 DCQLVYMEKVIQSLQNKC---NALLESPTGTGKTLC 51 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~~---~~liEAPTGTGKTla 51 (758)
-+|.+.++.+.+++..++ .+++.+|+|||||..
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 357777888888888775 689999999999973
No 143
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.27 E-value=0.5 Score=48.90 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHhcCC--ceEEeccCCCchHHHH
Q 004379 18 YDCQLVYMEKVIQSLQNKC--NALLESPTGTGKTLCL 52 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~--~~liEAPTGTGKTlay 52 (758)
.-+|.+.++.+.+.+.+++ ++++.+|+|||||...
T Consensus 27 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 27 IVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred hhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 3468888899999998875 7999999999999844
No 144
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.03 E-value=0.57 Score=48.71 Aligned_cols=36 Identities=8% Similarity=-0.059 Sum_probs=25.5
Q ss_pred CHHHH-HHHHHHHHHHhcC--CceEEeccCCCchHHHHH
Q 004379 18 YDCQL-VYMEKVIQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 18 r~~Q~-~~~~~i~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
|+.|. ++...+..++..+ .++++-+|+|||||...-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 44443 4445667777655 678999999999998554
No 145
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=84.89 E-value=0.56 Score=45.10 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcC--CceEEeccCCCchHHH
Q 004379 19 DCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLC 51 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTla 51 (758)
-+|.+.+..+.+.+.++ .++++.+|+|||||..
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 35667778888888776 4699999999999973
No 146
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.30 E-value=0.45 Score=49.92 Aligned_cols=43 Identities=26% Similarity=0.220 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHh--cCCceEEeccCCCchHHHHHHHHHH
Q 004379 14 PFEAYDCQLVYMEKVIQSLQ--NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~--~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|+...+|..+...+..+.. ...++++.+|+|||||. |+-+++
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~--la~~la 66 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKST--AVRALA 66 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTH--HHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHH--HHHHHH
Confidence 34433456565555544443 45789999999999998 444454
No 147
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.09 E-value=0.7 Score=47.30 Aligned_cols=37 Identities=32% Similarity=0.337 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHh--------------cCCceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQ--------------NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~--------------~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|.+.+..+.+.+. ..+.+++.+|+|||||. |+-+++
T Consensus 25 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~--la~~la 75 (297)
T 3b9p_A 25 GQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTL--LARAVA 75 (297)
T ss_dssp CCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHH--HHHHHH
T ss_pred ChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHH--HHHHHH
Confidence 45566666666552 24789999999999998 444453
No 148
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=83.08 E-value=0.95 Score=44.24 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhc--CCceEEeccCCCchHHH
Q 004379 21 QLVYMEKVIQSLQN--KCNALLESPTGTGKTLC 51 (758)
Q Consensus 21 Q~~~~~~i~~al~~--~~~~liEAPTGTGKTla 51 (758)
+.+....+...+.. +.++++.+|+|||||..
T Consensus 36 ~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 36 NDELIGALKSAASGDGVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp CHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 46677777777664 57899999999999983
No 149
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.02 E-value=0.86 Score=47.07 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 24 YMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 24 ~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+.+.+..+...+.++++.+|||||||. |+-++
T Consensus 14 ~~~~~~~~a~~~~~vLi~Ge~GtGKt~--lAr~i 45 (304)
T 1ojl_A 14 LLNEIAMVAPSDATVLIHGDSGTGKEL--VARAL 45 (304)
T ss_dssp HHHHHHHHCSTTSCEEEESCTTSCHHH--HHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCchHHH--HHHHH
Confidence 344444444567899999999999998 43444
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.96 E-value=0.55 Score=49.30 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHhcC--CceEEeccCCCchHHHH
Q 004379 19 DCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCL 52 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTlay 52 (758)
-+|.+.++.+..++..+ .++++.+|+|||||...
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 46788889999999888 77999999999999844
No 151
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.81 E-value=0.99 Score=47.28 Aligned_cols=34 Identities=26% Similarity=0.268 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcCCc--eEEeccCCCchHHHHH
Q 004379 20 CQLVYMEKVIQSLQNKCN--ALLESPTGTGKTLCLL 53 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~~--~liEAPTGTGKTlayL 53 (758)
+|.+.+..+..++.+|+. +++.+|.|||||....
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 588899999999999865 9999999999998554
No 152
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.71 E-value=1.4 Score=48.30 Aligned_cols=36 Identities=31% Similarity=0.439 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcC----CceEEeccCCCchHHHHHHHHHH
Q 004379 21 QLVYMEKVIQSLQNK----CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 21 Q~~~~~~i~~al~~~----~~~liEAPTGTGKTlayL~pal~ 58 (758)
+++.+..+.+.+..+ +++++.+|+|||||. |+-+++
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~--la~ala 84 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTA--LALAIA 84 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHH--HHHHHH
Confidence 333344555556554 579999999999998 444554
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=81.46 E-value=0.94 Score=46.62 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=17.7
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
++.+++.+|+|||||. |+-+++
T Consensus 49 ~~~vLL~Gp~GtGKT~--la~ala 70 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTL--LAKAIA 70 (301)
T ss_dssp CSEEEEECSSSSSHHH--HHHHHH
T ss_pred CceEEEECCCCcCHHH--HHHHHH
Confidence 4679999999999998 545554
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=81.43 E-value=0.72 Score=48.18 Aligned_cols=33 Identities=21% Similarity=0.168 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhcC-------CceEEeccCCCchHHH
Q 004379 19 DCQLVYMEKVIQSLQNK-------CNALLESPTGTGKTLC 51 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~-------~~~liEAPTGTGKTla 51 (758)
-+|.+.+..+...+... .++++.+|+|||||..
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHH
Confidence 36777777777776542 5899999999999983
No 155
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=80.48 E-value=1.6 Score=43.49 Aligned_cols=22 Identities=45% Similarity=0.688 Sum_probs=17.3
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+++.+|+|||||. |+-+++
T Consensus 45 ~~~vll~G~~GtGKT~--la~~la 66 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTL--LAKAIA 66 (257)
T ss_dssp CCEEEEECCTTSCHHH--HHHHHH
T ss_pred CCeEEEECcCCCCHHH--HHHHHH
Confidence 3568999999999998 555554
No 156
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.37 E-value=1 Score=47.74 Aligned_cols=37 Identities=27% Similarity=0.267 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHh--------------cCCceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQ--------------NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~--------------~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|.+.++.+.+.+. ..+.+++.+|+|||||. |+-+++
T Consensus 88 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~--la~aia 138 (357)
T 3d8b_A 88 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTL--IGKCIA 138 (357)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHH--HHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHH--HHHHHH
Confidence 45666666666654 24679999999999998 444553
No 157
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.02 E-value=1.8 Score=43.00 Aligned_cols=39 Identities=31% Similarity=0.427 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQN-----------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~-----------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+++.+..+.+.+.. ...+++.+|+|||||. |+-+++
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~--la~~la 60 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTL--LAKAVA 60 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHH--HHHHHH
Confidence 44555555555554432 3568999999999998 444454
No 158
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=79.24 E-value=1.2 Score=48.97 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHHHhc--CCceEEeccCCCchHHHHHHHHHHH
Q 004379 16 EAYDCQLVYMEKVIQSLQN--KCNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 16 ~~r~~Q~~~~~~i~~al~~--~~~~liEAPTGTGKTlayL~pal~~ 59 (758)
.+--+|.+.+..+.+.+.. ..++++.+|+|||||. |+-+++.
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~--la~~la~ 223 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTA--IAEGLAQ 223 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHH--HHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHH--HHHHHHH
Confidence 3444677788888888854 4789999999999999 4445543
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=78.75 E-value=1.3 Score=45.85 Aligned_cols=33 Identities=30% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHh-------cCCceEEeccCCCchHHH
Q 004379 19 DCQLVYMEKVIQSLQ-------NKCNALLESPTGTGKTLC 51 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~-------~~~~~liEAPTGTGKTla 51 (758)
-+|...+..+.+.+. ...++++.+|+|||||..
T Consensus 15 ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHH
T ss_pred hCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHH
Confidence 345555555555553 236899999999999983
No 160
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=78.72 E-value=1 Score=46.82 Aligned_cols=41 Identities=27% Similarity=0.303 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHh----------c----CCceEEeccCCCchHHHHHHHHHH
Q 004379 16 EAYDCQLVYMEKVIQSLQ----------N----KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 16 ~~r~~Q~~~~~~i~~al~----------~----~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+...+|.+.++.+.+++. . .+.+++.+|+|||||. |+-+++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~--la~aia 72 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSY--LAKAVA 72 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHH--HHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHH--HHHHHH
Confidence 334567777777777662 1 2569999999999998 444554
No 161
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.64 E-value=1.4 Score=46.74 Aligned_cols=22 Identities=64% Similarity=0.886 Sum_probs=17.1
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..++++.+|+|||||. |+-+++
T Consensus 72 ~~~ill~Gp~GtGKT~--la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTL--MAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHH--HHHHHH
T ss_pred CCCEEEECCCCCCHHH--HHHHHH
Confidence 3579999999999998 444454
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=78.42 E-value=1 Score=49.29 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=29.0
Q ss_pred CHHHHHHH---HHHHHHHhcCCc--eEEeccCCCchHHH
Q 004379 18 YDCQLVYM---EKVIQSLQNKCN--ALLESPTGTGKTLC 51 (758)
Q Consensus 18 r~~Q~~~~---~~i~~al~~~~~--~liEAPTGTGKTla 51 (758)
.-+|...+ ..+..++..++. +++.+|+|||||..
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTL 66 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHH
Confidence 45788888 788899988864 99999999999983
No 163
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.37 E-value=1.2 Score=52.36 Aligned_cols=39 Identities=28% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhcCC-----------ceEEeccCCCchHHHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQNKC-----------NALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~-----------~~liEAPTGTGKTlayL~pal~~~ 60 (758)
+|.+.+..+.+++.... ++++.+|||||||. |+-+++..
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~--lA~ala~~ 544 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTE--LARALAES 544 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHH--HHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHH--HHHHHHHH
Confidence 57888888888886432 59999999999998 44455533
No 164
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=78.15 E-value=1.1 Score=48.05 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHh--------------cCCceEEeccCCCchHHHHHHHHHH
Q 004379 17 AYDCQLVYMEKVIQSLQ--------------NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~--------------~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..-+|...+..+.+.+. ...++++.+|+|||||. |+-+++
T Consensus 116 ~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~--la~aia 169 (389)
T 3vfd_A 116 DIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTM--LAKAVA 169 (389)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHH--HHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHH--HHHHHH
Confidence 34467777777777662 24789999999999998 444553
No 165
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.93 E-value=2.3 Score=44.78 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhcC----CceEEeccCCCchHHHH
Q 004379 19 DCQLVYMEKVIQSLQNK----CNALLESPTGTGKTLCL 52 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~----~~~liEAPTGTGKTlay 52 (758)
+.+++.+..+.+.+..+ .++++.+|+|||||...
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 44445555577777665 36999999999999843
No 166
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=77.87 E-value=1.8 Score=44.38 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=17.2
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+++.+|+|||||. |+-+++
T Consensus 37 ~~lLl~GppGtGKT~--la~aiA 57 (293)
T 3t15_A 37 LILGIWGGKGQGKSF--QCELVF 57 (293)
T ss_dssp SEEEEEECTTSCHHH--HHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHH
Confidence 457899999999998 666665
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.56 E-value=1.6 Score=45.93 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHhcCCc---eEEeccCCCchHHHH
Q 004379 18 YDCQLVYMEKVIQSLQNKCN---ALLESPTGTGKTLCL 52 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~---~liEAPTGTGKTlay 52 (758)
.-+|.+.+..+.+++..++. +++.+|+|||||...
T Consensus 18 ~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 18 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred ccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 34688888899999988753 689999999999844
No 168
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.45 E-value=1.3 Score=45.56 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.7
Q ss_pred CceEEeccCCCchHHHH
Q 004379 36 CNALLESPTGTGKTLCL 52 (758)
Q Consensus 36 ~~~liEAPTGTGKTlay 52 (758)
.++++.+|+|||||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999844
No 169
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=77.25 E-value=1.2 Score=46.37 Aligned_cols=27 Identities=30% Similarity=0.192 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 24 YMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 24 ~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
-++.+.+++..++.++|.+|.|+|||.
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSS 46 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHH
Confidence 344555566667899999999999998
No 170
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=77.15 E-value=1.4 Score=47.85 Aligned_cols=37 Identities=38% Similarity=0.391 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhc----------------CCceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQN----------------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~----------------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|.+.-+.+..++.+ .+++++.+|+|||||. |+-+|+
T Consensus 19 Gqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~--lar~lA 71 (444)
T 1g41_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTE--IARRLA 71 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHH--HHHHHH
Confidence 466666666666532 3679999999999998 445554
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=77.12 E-value=1.1 Score=45.96 Aligned_cols=33 Identities=27% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhcCC--ceEEeccCCCchHHHH
Q 004379 20 CQLVYMEKVIQSLQNKC--NALLESPTGTGKTLCL 52 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~--~~liEAPTGTGKTlay 52 (758)
+|.+.+..+.+.+..++ ++++.+|+|||||...
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHH
Confidence 58888888988888774 6999999999999744
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=77.09 E-value=1.6 Score=49.80 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|...++.+..++..+.++++.+|+|||||. |+-+|+
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTt--lar~ia 81 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSM--LGQAMA 81 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHH--HHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHH--HHHHHh
Confidence 6889999999999999999999999999998 444443
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=77.07 E-value=1.6 Score=45.49 Aligned_cols=21 Identities=43% Similarity=0.618 Sum_probs=16.8
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.+++.+|+|||||. |+-+++
T Consensus 46 ~~iLL~GppGtGKT~--la~ala 66 (322)
T 1xwi_A 46 RGILLFGPPGTGKSY--LAKAVA 66 (322)
T ss_dssp SEEEEESSSSSCHHH--HHHHHH
T ss_pred ceEEEECCCCccHHH--HHHHHH
Confidence 568999999999998 544554
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.01 E-value=1.3 Score=46.93 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHh--------------cCCceEEeccCCCchHHHHHHHHHH
Q 004379 19 DCQLVYMEKVIQSLQ--------------NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~--------------~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
-+|.+.++.+.+++. ..+.+++.+|+|||||+ |+-+++
T Consensus 54 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~--la~ala 105 (355)
T 2qp9_X 54 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSY--LAKAVA 105 (355)
T ss_dssp CCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHH--HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHH--HHHHHH
Confidence 356666666666652 12568999999999998 444554
No 175
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.48 E-value=0.91 Score=45.62 Aligned_cols=22 Identities=50% Similarity=0.691 Sum_probs=17.1
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+++.+|+|||||. |+-+++
T Consensus 44 ~~~vll~G~~GtGKT~--la~~la 65 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTL--LAKAVA 65 (268)
T ss_dssp CSCCCCBCSSCSSHHH--HHHHHH
T ss_pred CceEEEECCCCCcHHH--HHHHHH
Confidence 3568999999999998 444554
No 176
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=76.16 E-value=3.7 Score=40.21 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=19.6
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
|..|...++.|++|+|||.-.+--|.
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 44567899999999999985554333
No 177
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.96 E-value=2.3 Score=45.03 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 25 MEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 25 ~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+.-++..|+.+++-+|||+|||- |+.+|.
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKST--ll~~l~ 196 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTT--LMKALM 196 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHH--HHHHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHH--HHHHHH
Confidence 47787788999999999999999997 555553
No 178
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=75.85 E-value=1.7 Score=45.52 Aligned_cols=37 Identities=32% Similarity=0.370 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcC-------CceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQNK-------CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~-------~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|....+.+..++..+ .++++-+|+|+|||. |+-+++
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTT--La~~ia 72 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTT--LAHIIA 72 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHH--HHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHH--HHHHHH
Confidence 5666677777776654 789999999999998 444454
No 179
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.66 E-value=1.3 Score=48.00 Aligned_cols=22 Identities=50% Similarity=0.597 Sum_probs=18.3
Q ss_pred CceEEeccCCCchHHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+.+++-+|+|||||+ |+-|++.
T Consensus 216 rGvLLyGPPGTGKTl--lAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTL--LARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHH--HHHHHHH
T ss_pred CeeEEECcCCCCHHH--HHHHHHH
Confidence 568999999999999 6667763
No 180
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.01 E-value=1.5 Score=46.96 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=18.5
Q ss_pred CceEEeccCCCchHHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+.+++-+|+|||||+ |+-|++.
T Consensus 183 rGvLL~GPPGTGKTl--lAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTL--LARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHH--HHHHHHH
T ss_pred CceEEeCCCCCCHHH--HHHHHHH
Confidence 669999999999999 6667753
No 181
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.59 E-value=1.5 Score=46.24 Aligned_cols=34 Identities=32% Similarity=0.382 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH------hcCCceEEeccCCCchHHHH
Q 004379 19 DCQLVYMEKVIQSL------QNKCNALLESPTGTGKTLCL 52 (758)
Q Consensus 19 ~~Q~~~~~~i~~al------~~~~~~liEAPTGTGKTlay 52 (758)
.++.+-++.+.+.+ ..+.++++-+|+|||||...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 45556666666665 23477999999999999843
No 182
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.57 E-value=1.6 Score=46.24 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhc------CC--ceEEeccCCCchHHHH
Q 004379 20 CQLVYMEKVIQSLQN------KC--NALLESPTGTGKTLCL 52 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~------~~--~~liEAPTGTGKTlay 52 (758)
++.+-++.+.+.+.. +. ++++.+|+|||||...
T Consensus 21 gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 21 HREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 444444444444433 24 7999999999999844
No 183
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.05 E-value=2 Score=50.52 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHHHhcC--CceEEeccCCCchHHHHHHHHHHHH
Q 004379 16 EAYDCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 16 ~~r~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
.+--+|.+.+..+.+.+..+ .++++.+|+|||||. |+-+++..
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~--la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTA--IAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHH--HHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHH--HHHHHHHH
Confidence 44457888888888888554 689999999999998 44455533
No 184
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=73.53 E-value=3.3 Score=41.62 Aligned_cols=21 Identities=48% Similarity=0.700 Sum_probs=16.6
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
.++++.+|+|||||. |+-+++
T Consensus 65 ~~vLl~G~~GtGKT~--la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTA--LAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHH--HHHHHH
T ss_pred eEEEEECCCCCcHHH--HHHHHH
Confidence 569999999999998 434454
No 185
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.50 E-value=1.6 Score=47.27 Aligned_cols=22 Identities=45% Similarity=0.617 Sum_probs=18.2
Q ss_pred CceEEeccCCCchHHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+-+++.+|+|||||+ |+-|++.
T Consensus 207 rGiLL~GPPGtGKT~--lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTM--LVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHH--HHHHHHH
T ss_pred ceEEEECCCCCCHHH--HHHHHHH
Confidence 448999999999999 6667763
No 186
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=73.44 E-value=2.2 Score=44.00 Aligned_cols=34 Identities=9% Similarity=-0.012 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 20 CQLVYMEKVIQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
+|.+.+..+.+++++++ +.++.+|.|+|||-...
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~ 36 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSL 36 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHH
Confidence 58889999999999885 68999999999987554
No 187
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.27 E-value=1.6 Score=47.29 Aligned_cols=22 Identities=50% Similarity=0.634 Sum_probs=18.3
Q ss_pred CceEEeccCCCchHHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+-+++-+|+|||||+ |+-|++.
T Consensus 216 rGvLL~GPPGtGKTl--lAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTL--LAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHH--HHHHHHH
T ss_pred CeEEEECCCCCcHHH--HHHHHHH
Confidence 568999999999999 6667763
No 188
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=73.22 E-value=3.2 Score=42.95 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhcC----CceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQNK----CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~----~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+......+...+... .++++-+|+|||||. |+-+++
T Consensus 18 ~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~--la~~i~ 58 (324)
T 1l8q_A 18 GNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTH--LLQAAG 58 (324)
T ss_dssp TTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHH--HHHHHH
Confidence 3433344444444443 579999999999998 444454
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=73.11 E-value=1.7 Score=51.01 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhcC-----------CceEEeccCCCchHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQNK-----------CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~-----------~~~liEAPTGTGKTlayL~pal~ 58 (758)
+|.+.+..|.+++... .++++.+|||||||. |+-+++
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~--la~~la 509 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTE--VTVQLS 509 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHH--HHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHH--HHHHHH
Confidence 5677777777777532 268999999999998 434554
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=72.76 E-value=2.2 Score=46.52 Aligned_cols=38 Identities=26% Similarity=0.234 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHh--------------cCCceEEeccCCCchHHHHHHHHHH
Q 004379 19 DCQLVYMEKVIQSLQ--------------NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~--------------~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
-+|.+....+.+++. ..+.+++.+|+|||||. |+-+++
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~--lA~aia 188 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY--LAKAVA 188 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHH--HHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHH--HHHHHH
Confidence 356666666666652 12668999999999998 444554
No 191
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.74 E-value=1.9 Score=45.64 Aligned_cols=18 Identities=44% Similarity=0.521 Sum_probs=15.1
Q ss_pred CCceEEeccCCCchHHHH
Q 004379 35 KCNALLESPTGTGKTLCL 52 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlay 52 (758)
..++++.+|+|||||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999843
No 192
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=72.30 E-value=3.6 Score=40.26 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=22.6
Q ss_pred HHHHhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 29 IQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 29 ~~al~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
+..-..|...++-+|+|+|||.++|--+..+..
T Consensus 6 ~~~~~~G~i~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 6 AFSKKIGWIEFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp -----CCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred hhccCCcEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 333355678899999999999988876665543
No 193
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=72.01 E-value=3.1 Score=43.85 Aligned_cols=44 Identities=25% Similarity=0.412 Sum_probs=31.0
Q ss_pred eecCC--CCCCHHHHHHHHH-----HHHHHhcCCc--eEEeccCCCchHHHHH
Q 004379 10 DVEFP--FEAYDCQLVYMEK-----VIQSLQNKCN--ALLESPTGTGKTLCLL 53 (758)
Q Consensus 10 ~~~Fp--f~~r~~Q~~~~~~-----i~~al~~~~~--~liEAPTGTGKTlayL 53 (758)
.+.|. |.+...|.++-+. |.++|.+|.+ ++.=+.||+|||....
T Consensus 51 ~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 51 EFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp EEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred eEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 34444 4566678887765 3455666655 6899999999999875
No 194
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=71.04 E-value=6.5 Score=38.36 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=20.0
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+..|...++-+|+|+|||.-.+.-+.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999986554333
No 195
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.87 E-value=1.9 Score=46.97 Aligned_cols=21 Identities=48% Similarity=0.616 Sum_probs=18.0
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+-+|+.+|+|||||+ |+-|++
T Consensus 244 rGILLyGPPGTGKTl--LAkAiA 264 (467)
T 4b4t_H 244 KGILLYGPPGTGKTL--CARAVA 264 (467)
T ss_dssp SEEEECSCTTSSHHH--HHHHHH
T ss_pred CceEeeCCCCCcHHH--HHHHHH
Confidence 669999999999998 666776
No 196
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.64 E-value=2.1 Score=46.15 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHH-Hhc-----------CCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQS-LQN-----------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~a-l~~-----------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.|++-+.+.... +.+ .+-+++-+|+|||||+ |+-|++
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTl--LAkAiA 237 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTL--LAKAVA 237 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHH--HHHHHH
Confidence 45666666555543 221 2569999999999999 666775
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=70.46 E-value=2.9 Score=43.17 Aligned_cols=36 Identities=19% Similarity=0.012 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHHhcCC---ceEEeccCCCchHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQNKC---NALLESPTGTGKTLCLL 53 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~---~~liEAPTGTGKTlayL 53 (758)
.-+|.+.+..+.+.+..++ .+++-+|+|||||...-
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 3478888899999998774 35777779999998543
No 198
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.00 E-value=5.3 Score=39.53 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQN-----------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~-----------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+++-++.+...+.+ .+.+++-+|+|||||. |+-+++
T Consensus 21 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTt--l~~~i~ 70 (254)
T 1ixz_A 21 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH--LARAVA 70 (254)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHH--HHHHHH
Confidence 34555555556555532 2348999999999997 555554
No 199
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=69.79 E-value=2.2 Score=50.76 Aligned_cols=39 Identities=33% Similarity=0.339 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcC-----------CceEEeccCCCchHHHHHHHHHHHH
Q 004379 20 CQLVYMEKVIQSLQNK-----------CNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~-----------~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
+|.+.|..+..++... .++++.+|||||||. |+-+|+..
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~--lA~~la~~ 611 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTE--LAKTLAAT 611 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHH--HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHH--HHHHHHHH
Confidence 5677777777777543 368999999999998 44455543
No 200
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.77 E-value=3 Score=46.45 Aligned_cols=33 Identities=30% Similarity=0.244 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhc-------------------CCceEEeccCCCchHHHH
Q 004379 20 CQLVYMEKVIQSLQN-------------------KCNALLESPTGTGKTLCL 52 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~-------------------~~~~liEAPTGTGKTlay 52 (758)
+|.+.++.+.+.+.. .+.+++.+|+|||||...
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHH
Confidence 566677777777654 267999999999999844
No 201
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.67 E-value=2.9 Score=42.85 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhcCC--ceEEeccCCCchHHHH
Q 004379 20 CQLVYMEKVIQSLQNKC--NALLESPTGTGKTLCL 52 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~--~~liEAPTGTGKTlay 52 (758)
+|.+.+..+.+.+.+++ ++++.+|+|||||...
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHH
Confidence 57788888888888763 5999999999999744
No 202
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.02 E-value=2.5 Score=46.76 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=17.0
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+++.+|+|||||+ |+-+++
T Consensus 239 ~~vLL~GppGtGKT~--lAraia 259 (489)
T 3hu3_A 239 RGILLYGPPGTGKTL--IARAVA 259 (489)
T ss_dssp CEEEEECSTTSSHHH--HHHHHH
T ss_pred CcEEEECcCCCCHHH--HHHHHH
Confidence 669999999999999 444553
No 203
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=68.93 E-value=4.4 Score=40.75 Aligned_cols=20 Identities=35% Similarity=0.366 Sum_probs=16.5
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++-+|.|||||+.. -||+
T Consensus 106 ~~~l~GppgtGKt~~a--~ala 125 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIA--EAIA 125 (267)
T ss_dssp EEEEECSTTSSHHHHH--HHHH
T ss_pred EEEEECCCCCCHHHHH--HHHH
Confidence 5999999999999944 4665
No 204
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=67.67 E-value=2.9 Score=43.67 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 24 YMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 24 ~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+...+.-.+..|+.+++-+|||+|||- |+-+|
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT--ll~~l 191 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT--YIKSI 191 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH--HHHHG
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH--HHHHH
Confidence 667777788899999999999999997 44445
No 205
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=67.56 E-value=6.2 Score=48.94 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHHhhCCCcccccccccccCCCCCCCCCCCCCCCCCCe
Q 004379 17 AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGSFSTLGSQVNNQISGSQSSVNSSQSGDSKLPT 96 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 96 (758)
.-+.|.+.+.. .+++++|.|+-|||||.+++-- +.+....+.. ..+..+
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~r-i~~ll~~~~~------------------------~~~~~~ 59 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVER-MIRKITAEEN------------------------PIDVDR 59 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHH-HHHHHSCSSS------------------------CCCGGG
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHH-HHHHHhcCCC------------------------CCCccc
Confidence 45788887654 4789999999999999987655 4444433210 012247
Q ss_pred EEEeCCccchHHHHHH
Q 004379 97 ILYTSRTHSQLRQVIQ 112 (758)
Q Consensus 97 Ii~~trT~sql~Q~i~ 112 (758)
|++.|-|..-...+-+
T Consensus 60 il~~Tft~~aa~e~~~ 75 (1232)
T 3u4q_A 60 LLVVTFTNASAAEMKH 75 (1232)
T ss_dssp EEEECSSHHHHHHHHH
T ss_pred eEEEeccHHHHHHHHH
Confidence 9999999776544433
No 206
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=67.38 E-value=1.7 Score=49.42 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHhcCC-------------ceEEeccCCCchHH
Q 004379 20 CQLVYMEKVIQSLQNKC-------------NALLESPTGTGKTL 50 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~~~-------------~~liEAPTGTGKTl 50 (758)
+|.+.-..+.-++..+. ++++.+|+|||||.
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQ 342 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHH
Confidence 45555555555555554 89999999999998
No 207
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=66.99 E-value=4.3 Score=45.08 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 23 VYMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 23 ~~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
+++..+.-++..|.++++-+|||+|||-
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 4556677778899999999999999997
No 208
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=66.24 E-value=3.4 Score=45.45 Aligned_cols=39 Identities=33% Similarity=0.499 Sum_probs=25.6
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQN-----------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~-----------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
...+++-+..+.+.+.+ .+.+++.+|+|||||+ |+-+++
T Consensus 21 ~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~--Laraia 70 (476)
T 2ce7_A 21 AEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTL--LARAVA 70 (476)
T ss_dssp CHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHH--HHHHHH
Confidence 34455555555555542 2568999999999998 555564
No 209
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.77 E-value=7 Score=39.29 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQN-----------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~-----------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+++-++.+...+.+ .+.+++-+|+|||||. |+-+++
T Consensus 45 ~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTt--l~~~i~ 94 (278)
T 1iy2_A 45 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH--LARAVA 94 (278)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHH--HHHHHH
T ss_pred hHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHH--HHHHHH
Confidence 34565666666655533 1348999999999997 555554
No 210
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=65.01 E-value=5.6 Score=38.30 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.1
Q ss_pred CceEEeccCCCchHHHHH
Q 004379 36 CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL 53 (758)
.++++-+|.|||||...+
T Consensus 59 n~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp SEEEEESCGGGCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 368999999999998554
No 211
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=63.10 E-value=7.2 Score=40.75 Aligned_cols=49 Identities=24% Similarity=0.299 Sum_probs=33.1
Q ss_pred eeEcCeeecCC--CCCCHHHHHHHHHH----HHHHhcCC--ceEEeccCCCchHHHH
Q 004379 4 YKIRGIDVEFP--FEAYDCQLVYMEKV----IQSLQNKC--NALLESPTGTGKTLCL 52 (758)
Q Consensus 4 ~~i~~i~~~Fp--f~~r~~Q~~~~~~i----~~al~~~~--~~liEAPTGTGKTlay 52 (758)
+.+++-.+.|. |.+...|.++-+.+ .+.+-+|- .++.=+.||+|||...
T Consensus 56 ~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 56 LIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred EEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 34455566666 55666788877663 34444553 3678899999999986
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=62.59 E-value=3.6 Score=43.20 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhc------CCceEEeccCCCchHHHH
Q 004379 19 DCQLVYMEKVIQSLQN------KCNALLESPTGTGKTLCL 52 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~------~~~~liEAPTGTGKTlay 52 (758)
.++.+-++.+.+.+.. +..+++-+|+|||||...
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHH
Confidence 3455555555555553 467999999999999843
No 213
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=61.53 E-value=2.8 Score=43.18 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 23 VYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 23 ~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
...+.|--.+..|+.+.|-+|+|+|||- |+-+|+
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKST--Ll~lL~ 147 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSM--LCNSLI 147 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHH--HHHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHH--HHHHHh
Confidence 3556666667888999999999999986 444443
No 214
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.92 E-value=3.1 Score=40.85 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=24.7
Q ss_pred cCccEEEecCccccChhhhhccCCCccccEEEEeCCcc
Q 004379 208 KTVDIVFAPYNYLIDPWFRKGLGVEWKNSILIFDEAHN 245 (758)
Q Consensus 208 ~~AdIIv~ny~yLl~~~~~~~~~i~~~~~ilIiDEAHn 245 (758)
..++|+|++...|++.... . ..+-.+|||||||.
T Consensus 154 ~~~~Ivv~Tpg~l~~~l~~-~---l~~~~~lVlDEah~ 187 (235)
T 3llm_A 154 PHASIMFCTVGVLLRKLEA-G---IRGISHVIVDEIHE 187 (235)
T ss_dssp SSSEEEEEEHHHHHHHHHH-C---CTTCCEEEECCTTS
T ss_pred CCCeEEEECHHHHHHHHHh-h---hcCCcEEEEECCcc
Confidence 4689999998777665422 2 23557999999996
No 215
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.61 E-value=5.7 Score=46.49 Aligned_cols=40 Identities=35% Similarity=0.343 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHhc--CCceEEeccCCCchHHHHHHHHHH
Q 004379 17 AYDCQLVYMEKVIQSLQN--KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~--~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+--+|.+.+..+.+.+.. +.++++-+|+|||||.. +-+++
T Consensus 187 ~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~l--a~~la 228 (758)
T 1r6b_X 187 PLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAI--AEGLA 228 (758)
T ss_dssp CCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHH--HHHHH
T ss_pred CccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHH--HHHHH
Confidence 334566777778888865 47799999999999984 33444
No 216
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=60.48 E-value=6.6 Score=41.43 Aligned_cols=50 Identities=18% Similarity=0.156 Sum_probs=33.7
Q ss_pred eeEcCeeecCC--CCCCHHHHHHHHHHH----HHHhcCC--ceEEeccCCCchHHHHH
Q 004379 4 YKIRGIDVEFP--FEAYDCQLVYMEKVI----QSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 4 ~~i~~i~~~Fp--f~~r~~Q~~~~~~i~----~al~~~~--~~liEAPTGTGKTlayL 53 (758)
+.+++-.+.|. |.|...|.++-+.+. +.+-+|. .++.=+.||+|||....
T Consensus 46 i~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 46 ISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp EEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred EEECCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 34455556665 567778888776543 3444553 36789999999999864
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.92 E-value=5.8 Score=47.18 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcC--CceEEeccCCCchHHHHHHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSLQNK--CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~~--~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.+.-+|.+.+..+.+.+..+ .++++-+|+|||||. |+-+++
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~--la~~la 212 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTA--IVEGLA 212 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHH--HHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHH--HHHHHH
Confidence 344456778888888888765 579999999999998 444554
No 218
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.85 E-value=3.4 Score=43.16 Aligned_cols=33 Identities=24% Similarity=0.170 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHH-hcC--CceEEeccCCCchHHHH
Q 004379 20 CQLVYMEKVIQSL-QNK--CNALLESPTGTGKTLCL 52 (758)
Q Consensus 20 ~Q~~~~~~i~~al-~~~--~~~liEAPTGTGKTlay 52 (758)
+|.+.+..+.+++ ..+ .++++-+|+|+|||...
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRC 53 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHH
Confidence 6888888888888 555 45999999999999844
No 219
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=59.81 E-value=9.6 Score=42.07 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHHhc-----------CCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQN-----------KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~-----------~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+++-+..+...+.+ .+.+++.+|+|||||. |+-+++
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTt--LaraIa 85 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTH--LARAVA 85 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHH--HHHHHH
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHH--HHHHHH
Confidence 34555555666555543 2348999999999998 555665
No 220
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=59.10 E-value=6.8 Score=42.20 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 19 DCQLVYMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 19 ~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
+.+......+. ...++.+++-+|||+|||-
T Consensus 153 ~~~~~~L~~l~--~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 153 AHNHDNFRRLI--KRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp HHHHHHHHHHH--TSSSEEEEEECSTTSCHHH
T ss_pred HHHHHHHHHHH--HhcCCeEEEECCCCCCHHH
Confidence 45666666662 2456788999999999997
No 221
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=58.29 E-value=7.4 Score=40.34 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=33.0
Q ss_pred eEcCeeecCC--CCCCHHHHHHHHHH----HHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 5 KIRGIDVEFP--FEAYDCQLVYMEKV----IQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 5 ~i~~i~~~Fp--f~~r~~Q~~~~~~i----~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
.+.+-.+.|. |.+...|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 40 ~~~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 40 VIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp EETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred EECCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3455555565 55666788877654 34444553 36788999999999875
No 222
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.26 E-value=6.2 Score=53.06 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 17 AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
|-..=..+..-+...+..++++++.+|||||||.
T Consensus 1286 PT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1286 PTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHH
T ss_pred cchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHH
Confidence 3333344555666778899999999999999996
No 223
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=57.93 E-value=9.5 Score=41.40 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.8
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
.++++-+|+|||||. |+-+++
T Consensus 131 ~~lll~Gp~G~GKTt--La~aia 151 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTH--LLQSIG 151 (440)
T ss_dssp CCEEEECSSSSSHHH--HHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHH
Confidence 579999999999998 444554
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=57.88 E-value=5.2 Score=36.20 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=18.6
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.++.+++-+|+|+|||- |+-+++
T Consensus 35 ~g~~~~l~G~~G~GKTt--L~~~i~ 57 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH--LLQAWV 57 (149)
T ss_dssp CCSEEEEESSSTTTTCH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHH
Confidence 67889999999999987 444554
No 225
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.50 E-value=5.8 Score=37.26 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 26 EKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 26 ~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+.....+..+..+++++|.|+|||- ++-.|
T Consensus 3 ~~~~~~~~~~~~I~l~G~~GsGKsT--~a~~L 32 (199)
T 2bwj_A 3 GGFMEDLRKCKIIFIIGGPGSGKGT--QCEKL 32 (199)
T ss_dssp -CHHHHHHHSCEEEEEECTTSSHHH--HHHHH
T ss_pred cccccccCCCCEEEEECCCCCCHHH--HHHHH
Confidence 3334445567789999999999997 44444
No 226
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.02 E-value=7.8 Score=51.52 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHH
Q 004379 17 AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLC 51 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTla 51 (758)
|-..-..+..-+..++..++++++-+|||||||..
T Consensus 1249 pT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1249 PTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred eccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHH
Confidence 33445566666777888999999999999999983
No 227
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=56.80 E-value=5.8 Score=42.94 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.7
Q ss_pred cCCceEEeccCCCchHHHH
Q 004379 34 NKCNALLESPTGTGKTLCL 52 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlay 52 (758)
...|+++-||||+|||.++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 3479999999999999975
No 228
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=56.69 E-value=8.1 Score=41.96 Aligned_cols=35 Identities=17% Similarity=0.151 Sum_probs=25.0
Q ss_pred HHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 27 KVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 27 ~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
.+...|..|...++-||+|+|||.-.+--|...+.
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33344566788999999999999866655554443
No 229
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=56.43 E-value=20 Score=34.19 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=18.2
Q ss_pred HHhcCCceEEeccCCCchHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL 53 (758)
.+..|...++-+|+|+|||.-..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~ 41 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSL 41 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHH
Confidence 35567889999999999996433
No 230
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=56.07 E-value=15 Score=34.91 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.3
Q ss_pred HHhcCCceEEeccCCCchHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL 53 (758)
.+..|...++-+|+|+|||.-.+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~ 38 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLAL 38 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHH
Confidence 34567889999999999997443
No 231
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.29 E-value=13 Score=35.69 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=26.8
Q ss_pred CCCC-HHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 15 FEAY-DCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 15 f~~r-~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.|. .+|....+. +..|+.+.+-+|.|+|||. |+-+|+
T Consensus 5 i~pk~~g~~~~l~~----i~~Ge~~~liG~nGsGKST--Ll~~l~ 43 (208)
T 3b85_A 5 IRPKTLGQKHYVDA----IDTNTIVFGLGPAGSGKTY--LAMAKA 43 (208)
T ss_dssp CCCCSHHHHHHHHH----HHHCSEEEEECCTTSSTTH--HHHHHH
T ss_pred cccCCHhHHHHHHh----ccCCCEEEEECCCCCCHHH--HHHHHh
Confidence 4553 466655444 5889999999999999987 444444
No 232
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=55.12 E-value=9.8 Score=50.60 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHH
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL 53 (758)
.+.+-+.+..-+..+++++..+..+++-+|||+|||.++=
T Consensus 902 ~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 902 GFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 3455566777777888888888889999999999999653
No 233
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=53.73 E-value=11 Score=41.04 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=24.5
Q ss_pred HHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 27 KVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 27 ~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
.+...|..|...++-||+|+|||.-.+.-|...+.
T Consensus 195 ~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 195 RMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp HHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33334556678999999999999866655554443
No 234
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.27 E-value=6.5 Score=40.52 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=16.0
Q ss_pred CCceEEeccCCCchHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal 57 (758)
++.++|-+|||+|||- |+-.|
T Consensus 3 ~~~i~i~GptgsGKt~--la~~L 23 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTK--TSVML 23 (322)
T ss_dssp CEEEEEECCTTSCHHH--HHHHH
T ss_pred CcEEEEECCCcCCHHH--HHHHH
Confidence 3467899999999998 43444
No 235
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=53.03 E-value=6.9 Score=39.45 Aligned_cols=21 Identities=48% Similarity=0.768 Sum_probs=16.9
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.+++.+|.|||||. |+-+|+
T Consensus 45 ~GvlL~Gp~GtGKTt--Lakala 65 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTL--LAKAVA 65 (274)
T ss_dssp SEEEEESSTTSCHHH--HHHHHH
T ss_pred CeEEEECCCCCcHHH--HHHHHH
Confidence 338999999999998 656665
No 236
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=52.66 E-value=10 Score=41.19 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=24.4
Q ss_pred HHHhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 30 QSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 30 ~al~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
..|..|...++-|++|+|||.-.|--|...+.
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 34556778999999999999977766565554
No 237
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=52.38 E-value=10 Score=39.69 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHh---cC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSLQ---NK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~---~~--~~~liEAPTGTGKTlayL 53 (758)
|.|-..|.++-+.|...+. +| ..++.=+.||+|||...+
T Consensus 60 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 60 FDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp ECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4556678888777655433 34 336788999999999875
No 238
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=52.15 E-value=6.8 Score=40.77 Aligned_cols=21 Identities=43% Similarity=0.444 Sum_probs=16.3
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.++|-+|||+|||- |.-.|+
T Consensus 41 ~lIvI~GPTgsGKTt--La~~LA 61 (339)
T 3a8t_A 41 KLLVLMGATGTGKSR--LSIDLA 61 (339)
T ss_dssp EEEEEECSTTSSHHH--HHHHHH
T ss_pred ceEEEECCCCCCHHH--HHHHHH
Confidence 578999999999998 433443
No 239
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=51.54 E-value=7.2 Score=39.03 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 24 YMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 24 ~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
..+.+. +..|+.+++-+|||+|||-
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHH
Confidence 344444 6778899999999999986
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=51.44 E-value=5.8 Score=36.99 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.8
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.|+.+++-+|+|+|||- |+-.|.
T Consensus 4 ~g~~i~i~GpsGsGKST--L~~~L~ 26 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRH--IKNTLI 26 (180)
T ss_dssp CCCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHH
Confidence 46788999999999997 544443
No 241
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=51.24 E-value=5.2 Score=38.15 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=19.5
Q ss_pred HHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 30 QSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 30 ~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
..+..+..+++.+|+|+|||- |+-.|
T Consensus 7 ~~~~~~~~i~l~G~sGsGKsT--l~~~L 32 (204)
T 2qor_A 7 HHMARIPPLVVCGPSGVGKGT--LIKKV 32 (204)
T ss_dssp --CCCCCCEEEECCTTSCHHH--HHHHH
T ss_pred cccccCCEEEEECCCCCCHHH--HHHHH
Confidence 345677889999999999987 54555
No 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=51.05 E-value=8.7 Score=36.67 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=18.5
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.++.+++-+|+|+|||- |+-+|.
T Consensus 18 ~g~~ivl~GPSGaGKsT--L~~~L~ 40 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH--IKNALL 40 (197)
T ss_dssp SCCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCCEEEEECcCCCCHHH--HHHHHH
Confidence 56789999999999998 555553
No 243
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.95 E-value=4.9 Score=38.51 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.9
Q ss_pred ceEEeccCCCchHHHH
Q 004379 37 NALLESPTGTGKTLCL 52 (758)
Q Consensus 37 ~~liEAPTGTGKTlay 52 (758)
+.++.+|.|||||+..
T Consensus 7 i~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5689999999999954
No 244
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=50.81 E-value=10 Score=38.94 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=22.9
Q ss_pred HHHHhcCCceEEeccCCCchHHHHHHHHHHHH
Q 004379 29 IQSLQNKCNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 29 ~~al~~~~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
...|..|...++-|++|+|||.-.+.-|...+
T Consensus 62 lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 62 TYGYKRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp HSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455677899999999999986655444433
No 245
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.67 E-value=12 Score=39.20 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCCCHHHHHHHHH----HHHHHhcCCc--eEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEK----VIQSLQNKCN--ALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~----i~~al~~~~~--~liEAPTGTGKTlayL 53 (758)
|.+-..|.++-+. +.+.+-+|.+ ++.=+.||+|||....
T Consensus 58 f~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 58 LAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHC
T ss_pred EecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeec
Confidence 4566678877666 3444445533 6788999999999863
No 246
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=50.47 E-value=10 Score=40.28 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHH-HH-Hh----cCCceEE--eccCCCchHHHH
Q 004379 18 YDCQLVYMEKVI-QS-LQ----NKCNALL--ESPTGTGKTLCL 52 (758)
Q Consensus 18 r~~Q~~~~~~i~-~a-l~----~~~~~li--EAPTGTGKTlay 52 (758)
|+.+.+.+.... +. .. .+.++++ .+|+|+|||...
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555554443 33 32 2357889 999999999843
No 247
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=50.41 E-value=12 Score=39.57 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHH---hcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSL---QNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al---~~~--~~~liEAPTGTGKTlayL 53 (758)
|.+...|.++-+.|...+ -+| ..++.=+.||+|||....
T Consensus 91 f~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 91 FPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred cCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 456667888887765433 344 346788999999999775
No 248
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=49.96 E-value=8.6 Score=36.32 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=18.3
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+..|..+++.+|+|+|||- |+-.|
T Consensus 3 i~~g~~i~l~G~~GsGKST--l~~~L 26 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGT--VRKRI 26 (207)
T ss_dssp -CCCCEEEEECSTTSCHHH--HHHHH
T ss_pred CCCCCEEEEECCCCCCHHH--HHHHH
Confidence 3467889999999999987 44444
No 249
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=49.94 E-value=9.1 Score=36.21 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=18.7
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..++.+++.+|+|+|||- |.-+|+
T Consensus 22 ~~~~~~i~l~G~~GsGKsT--l~~~La 46 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTT--LGKAFA 46 (199)
T ss_dssp --CCCEEEEECCTTSCHHH--HHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHH--HHHHHH
Confidence 4567889999999999998 545554
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=49.85 E-value=9.1 Score=36.60 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.7
Q ss_pred cCCceEEeccCCCchHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal 57 (758)
.|..+++-+|+|+|||- |+-.|
T Consensus 7 ~g~~i~l~GpsGsGKsT--l~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGT--VREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHH--HHHHH
T ss_pred CCcEEEEECcCCCCHHH--HHHHH
Confidence 56788999999999997 54444
No 251
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=49.72 E-value=10 Score=40.22 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=20.7
Q ss_pred HHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 30 QSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 30 ~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
-.+..++.+++.+|.|+|||. |+-+|+
T Consensus 164 ~~i~~~~~i~l~G~~GsGKST--l~~~l~ 190 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTT--LAAALL 190 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHH--HHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHH--HHHHHH
Confidence 344567889999999999987 555554
No 252
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.67 E-value=9.2 Score=35.51 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=17.6
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+++++|.|+|||- ++-.|+
T Consensus 3 ~~~I~i~G~~GsGKsT--~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTT--SSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHH--HHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHH
Confidence 4678999999999997 555554
No 253
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=49.42 E-value=8 Score=39.74 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=15.9
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.++|-+|||+|||- |+-.|+
T Consensus 11 ~~i~i~GptgsGKt~--la~~La 31 (316)
T 3foz_A 11 KAIFLMGPTASGKTA--LAIELR 31 (316)
T ss_dssp EEEEEECCTTSCHHH--HHHHHH
T ss_pred cEEEEECCCccCHHH--HHHHHH
Confidence 457899999999998 444443
No 254
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=49.25 E-value=12 Score=39.20 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHH----HHHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEK----VIQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~----i~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
|.+-..|.++-+. +.+.+-+|. .++.=+.||+|||....
T Consensus 55 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 55 FDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp ECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred ECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 4455678877664 334444553 36788999999999775
No 255
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=49.10 E-value=9 Score=36.15 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=18.3
Q ss_pred hcCCceEEeccCCCchHHHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~pal 57 (758)
..|..+.+-+|+|+|||- |+-.|
T Consensus 5 ~~g~ii~l~Gp~GsGKST--l~~~L 27 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTS--LVRAL 27 (205)
T ss_dssp CCCCEEEEECCTTSCHHH--HHHHH
T ss_pred CCCcEEEEECcCCCCHHH--HHHHH
Confidence 467889999999999997 44444
No 256
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=48.82 E-value=10 Score=39.88 Aligned_cols=39 Identities=28% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHH----HHhcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQ----SLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~----al~~~--~~~liEAPTGTGKTlayL 53 (758)
|.+...|.++-+.+.. .+-+| ..++.=+.||+|||....
T Consensus 63 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 63 FGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred EeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 4566678887766543 33455 346788999999999775
No 257
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=48.78 E-value=6.4 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=15.9
Q ss_pred CceEEeccCCCchHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal 57 (758)
..+++.+|+|+|||- ++-.|
T Consensus 2 ~~I~l~G~~GsGKsT--~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSE--FAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHH--HHHHH
T ss_pred cEEEEECCCCCCHHH--HHHHH
Confidence 357899999999998 55555
No 258
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=48.47 E-value=6.1 Score=40.86 Aligned_cols=30 Identities=20% Similarity=0.143 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHH
Q 004379 17 AYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLC 51 (758)
Q Consensus 17 ~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTla 51 (758)
.|+.+.+ .+.+ +.. ..++|.+|.|+|||.-
T Consensus 17 gR~~el~---~L~~-l~~-~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 17 DREKEIE---KLKG-LRA-PITLVLGLRRTGKSSI 46 (357)
T ss_dssp CCHHHHH---HHHH-TCS-SEEEEEESTTSSHHHH
T ss_pred ChHHHHH---HHHH-hcC-CcEEEECCCCCCHHHH
Confidence 3554444 3444 554 6899999999999983
No 259
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.47 E-value=10 Score=40.28 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKV----IQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i----~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
|.+...|.++-+.+ .+.+-+|. .++.=+.||+|||...+
T Consensus 73 f~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 73 YGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp ECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred ecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 45666788877653 34444553 36788999999999874
No 260
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=48.29 E-value=13 Score=35.22 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=21.7
Q ss_pred cCCceEEeccCCCchHHHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
.|+..++-+|.|+|||.++|--+..+.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457789999999999998886655554
No 261
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=47.96 E-value=12 Score=40.01 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHH---HhcCC--ceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQS---LQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~a---l~~~~--~~liEAPTGTGKTlayL 53 (758)
|.|-..|.++-+.|... +-+|. .++.=+.||+|||...+
T Consensus 116 F~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 116 FDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred ECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 45666787776665432 23453 36788999999999885
No 262
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=47.83 E-value=14 Score=38.71 Aligned_cols=39 Identities=18% Similarity=0.364 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHH----HHHHHhcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEK----VIQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~----i~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
|.+...|.++-+. +.+.+-+| ..++.=+.||+|||....
T Consensus 64 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred ECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 4566678877655 33444455 346788999999999774
No 263
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=47.64 E-value=8.3 Score=45.43 Aligned_cols=23 Identities=43% Similarity=0.612 Sum_probs=18.2
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.++.+++-+|+|||||. |+-+|+
T Consensus 237 ~~~~vLL~Gp~GtGKTt--Larala 259 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTL--IARAVA 259 (806)
T ss_dssp CCCEEEECSCTTSSHHH--HHHHHH
T ss_pred CCCeEEEECcCCCCHHH--HHHHHH
Confidence 35679999999999997 555554
No 264
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=47.41 E-value=12 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhc---CCceEEeccCCCchHHHHHHHHHH
Q 004379 21 QLVYMEKVIQSLQN---KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 21 Q~~~~~~i~~al~~---~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.....+.+--.+.. ++.+++-+|.|+|||- |.-.|+
T Consensus 31 ~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKST--l~~~La 69 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTT--VGKIMA 69 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHH--HHHHHH
T ss_pred cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHH--HHHHHH
Confidence 34567777777777 8999999999999998 444453
No 265
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=47.13 E-value=11 Score=33.92 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.4
Q ss_pred CceEEeccCCCchHHHHHHHHHHHHHh
Q 004379 36 CNALLESPTGTGKTLCLLCATLAWRKS 62 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~~~~ 62 (758)
+..+|-+|+|+|||- |+-||.|+..
T Consensus 24 g~~~I~G~NGsGKSt--il~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSS--LLDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 467899999999998 6678887654
No 266
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=46.93 E-value=12 Score=34.63 Aligned_cols=23 Identities=43% Similarity=0.419 Sum_probs=17.9
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+..+++.+|.|+|||. ++-.|+
T Consensus 10 ~~~~i~i~G~~GsGKst--~~~~l~ 32 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTT--LGKELA 32 (180)
T ss_dssp CCCCEEEECSTTSSHHH--HHHHHH
T ss_pred cCCeEEEEeCCCCCHHH--HHHHHH
Confidence 45779999999999998 444453
No 267
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=46.92 E-value=11 Score=39.91 Aligned_cols=39 Identities=28% Similarity=0.384 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHH----HHHhcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVI----QSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~----~al~~~--~~~liEAPTGTGKTlayL 53 (758)
|.|-..|.++-+.+. +.+-+| ..++.=+.||+|||....
T Consensus 75 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 75 FGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred eccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 445557887766543 333445 346788999999999775
No 268
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=46.79 E-value=11 Score=39.19 Aligned_cols=39 Identities=23% Similarity=0.258 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHH---HHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKV---IQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i---~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
|.+...|.++-+.| .+.+-+|. .++.=+.||+|||....
T Consensus 56 f~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 56 FSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred eCCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 45566788776654 33333553 36789999999999774
No 269
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=46.76 E-value=11 Score=34.94 Aligned_cols=22 Identities=36% Similarity=0.363 Sum_probs=17.3
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++.+|+|+|||- +.-.|+
T Consensus 5 ~~~i~l~G~~GsGKst--~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS--VGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 4678999999999997 544553
No 270
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=46.74 E-value=14 Score=38.66 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHH----HHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKV----IQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i----~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
|.+-..|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 52 f~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 52 FHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp ECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 44556788887654 34444553 36788999999999774
No 271
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=46.61 E-value=14 Score=38.74 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHh---cC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSLQ---NK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~---~~--~~~liEAPTGTGKTlayL 53 (758)
|.|-..|.++-+.|...+. +| ..++.=+.||+|||....
T Consensus 61 f~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp ECTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred ECCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4566678887777655443 34 336788999999999885
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=46.18 E-value=8.6 Score=36.79 Aligned_cols=16 Identities=25% Similarity=0.437 Sum_probs=13.7
Q ss_pred CCceEEeccCCCchHH
Q 004379 35 KCNALLESPTGTGKTL 50 (758)
Q Consensus 35 ~~~~liEAPTGTGKTl 50 (758)
++.++|-+|||+|||-
T Consensus 34 g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSE 49 (205)
T ss_dssp TEEEEEECCCTTTTHH
T ss_pred CEEEEEECCCCCCHHH
Confidence 4568999999999986
No 273
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=46.13 E-value=10 Score=40.04 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHH----HHHHhcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKV----IQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i----~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
|.+-..|.++-+.+ .+.+-+| ..++.=+.||+|||....
T Consensus 76 f~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 76 YDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp ECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred eCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 44556788876653 3344455 346788999999999774
No 274
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=46.06 E-value=18 Score=35.03 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=18.4
Q ss_pred HhcCCceEEeccCCCchHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLC 54 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~ 54 (758)
+..|...++-+|+|+|||.-.+.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHT 43 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHH
Confidence 45668899999999999985543
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=45.87 E-value=14 Score=38.38 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=25.7
Q ss_pred HHHHHHhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 27 KVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 27 ~i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
.+...|..|...++-|++|+|||.-.|--|...+.
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33445667788999999999999977665555444
No 276
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.86 E-value=9.6 Score=44.61 Aligned_cols=21 Identities=48% Similarity=0.694 Sum_probs=17.6
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.+++.+|.|||||+ |+-|++
T Consensus 239 ~GILL~GPPGTGKT~--LAraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTL--IARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHH--HHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHH
Confidence 568999999999998 666665
No 277
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=45.48 E-value=15 Score=34.29 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=19.1
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
...+..+++++|.|+|||- ++-.|+
T Consensus 6 m~~~~~I~l~G~~GsGKsT--~~~~La 30 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGT--QCEKIV 30 (196)
T ss_dssp HTTSCEEEEEECTTSSHHH--HHHHHH
T ss_pred CcCCCEEEEECCCCCCHHH--HHHHHH
Confidence 3456789999999999998 444453
No 278
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=45.28 E-value=9.5 Score=42.14 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=21.3
Q ss_pred HHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.|..|...+|-||+|+|||.-.|--|..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4556778999999999999966544443
No 279
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=44.93 E-value=14 Score=37.37 Aligned_cols=33 Identities=15% Similarity=0.178 Sum_probs=24.7
Q ss_pred HHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 25 MEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 25 ~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
...+.-.+..|...++-+|+|+|||.-.+.-+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 445555677889999999999999985554433
No 280
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=44.93 E-value=17 Score=37.54 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=18.0
Q ss_pred hcCCceEEeccCCCchHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCA 55 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~p 55 (758)
..|...++-+|+|+|||.-.+.-
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~l 127 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQL 127 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHH
Confidence 44578999999999999855533
No 281
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=44.74 E-value=12 Score=35.16 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.3
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+..+++++|.|+|||- ++..|+
T Consensus 3 ~~~~I~l~G~~GsGKsT--~~~~L~ 25 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT--QCMNIM 25 (204)
T ss_dssp CCCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCcEEEEEcCCCCCHHH--HHHHHH
Confidence 46778999999999998 555553
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=44.33 E-value=12 Score=33.92 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=15.7
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++|.|+|||- ++-.|+
T Consensus 3 ~i~l~G~~GsGKsT--~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKST--VAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 57899999999997 545553
No 283
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=44.32 E-value=12 Score=39.40 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=29.7
Q ss_pred eecCC--CCCCHHHHHHHHHH----HHHHhcCC--ceEEeccCCCchHHHHH
Q 004379 10 DVEFP--FEAYDCQLVYMEKV----IQSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 10 ~~~Fp--f~~r~~Q~~~~~~i----~~al~~~~--~~liEAPTGTGKTlayL 53 (758)
.+.|. |.+...|.++-+.+ .+.+-+|. .++.=+.||+|||....
T Consensus 73 ~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 73 KFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp EEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred eEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 34444 45666788876654 44444553 36888999999999874
No 284
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=44.03 E-value=22 Score=33.25 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=19.5
Q ss_pred CCceEEeccCCCchHHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+...++-+|.|+|||..+|--+..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999877554443
No 285
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=43.54 E-value=11 Score=44.12 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=17.5
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.+++-+|.|||||+ |.-|++
T Consensus 512 ~gvLl~GPPGtGKT~--lAkaiA 532 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL--LAKAIA 532 (806)
T ss_dssp SCCEEESSTTSSHHH--HHHHHH
T ss_pred ceEEEecCCCCCchH--HHHHHH
Confidence 558999999999997 666665
No 286
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=43.21 E-value=13 Score=35.84 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=17.9
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
....+++++|.|+|||- ++-.|+
T Consensus 4 ~~~~I~l~G~~GsGKsT--~~~~La 26 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT--QCELIK 26 (222)
T ss_dssp CSCCEEEEESTTSSHHH--HHHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHHH
Confidence 44678999999999997 555554
No 287
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=43.15 E-value=12 Score=39.36 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=15.9
Q ss_pred HhcCCceEEeccCCCchHH
Q 004379 32 LQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTl 50 (758)
...++.+++-+|||+|||-
T Consensus 120 ~~~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 120 DVPRGLVLVTGPTGSGKST 138 (356)
T ss_dssp HCSSEEEEEECSTTSCHHH
T ss_pred hCCCCEEEEECCCCCCHHH
Confidence 3456789999999999987
No 288
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=43.07 E-value=8.5 Score=37.26 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=17.3
Q ss_pred hcCCceEEeccCCCchHHHHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.....+++++|+|+|||- ++-.|+
T Consensus 5 ~~~~~I~l~G~~GsGKsT--~a~~La 28 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGT--VSSRIT 28 (227)
T ss_dssp --CCEEEEEECTTSSHHH--HHHHHH
T ss_pred ccCcEEEEECCCCCCHHH--HHHHHH
Confidence 345678999999999998 444443
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=42.82 E-value=13 Score=36.58 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=17.4
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
....+++.+|.|+|||- ++..|+
T Consensus 28 ~~~~I~l~G~~GsGKsT--~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT--QSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHH--HHHHHH
T ss_pred CCcEEEEECCCCCCHHH--HHHHHH
Confidence 34568999999999987 555553
No 290
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=42.31 E-value=13 Score=41.66 Aligned_cols=22 Identities=36% Similarity=0.455 Sum_probs=17.5
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.++++-+|+|||||. |+-+++
T Consensus 108 g~~vll~Gp~GtGKTt--lar~ia 129 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTS--LAKSIA 129 (543)
T ss_dssp SCEEEEESSSSSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 5789999999999998 444454
No 291
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=42.08 E-value=20 Score=38.29 Aligned_cols=43 Identities=21% Similarity=0.266 Sum_probs=28.9
Q ss_pred ecCC--CCCCHHHHHHHHHH----HHHHhcC--CceEEeccCCCchHHHHH
Q 004379 11 VEFP--FEAYDCQLVYMEKV----IQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 11 ~~Fp--f~~r~~Q~~~~~~i----~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
+.|. |.+-..|.++-+.+ .+.+-+| ..++.=+.||+|||....
T Consensus 123 F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp EECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred EeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 4444 45666788876643 3444455 346788999999999875
No 292
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=42.06 E-value=19 Score=38.16 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=29.3
Q ss_pred eecCC--CCCCHHHHHHHHHH----HHHHhcC--CceEEeccCCCchHHHHH
Q 004379 10 DVEFP--FEAYDCQLVYMEKV----IQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 10 ~~~Fp--f~~r~~Q~~~~~~i----~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
.+.|. |.+-..|.++-+.+ .+.+-+| ..++.=+.||+|||....
T Consensus 102 ~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 102 AFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp EEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred EEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 34444 45666788776653 3444455 346788999999999875
No 293
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.84 E-value=13 Score=35.18 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=17.5
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+++++|.|+|||- ++-.|+
T Consensus 4 ~~~I~i~G~~GsGKsT--~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSS--QATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHH--HHHHHH
T ss_pred CeEEEEEcCCCCCHHH--HHHHHH
Confidence 4678999999999998 555553
No 294
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=41.63 E-value=22 Score=37.22 Aligned_cols=28 Identities=25% Similarity=0.117 Sum_probs=20.7
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~~ 59 (758)
|..+...++.+|+|+|||.-.+.-+...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999666544433
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=41.36 E-value=10 Score=35.71 Aligned_cols=20 Identities=35% Similarity=0.595 Sum_probs=16.3
Q ss_pred CceEEeccCCCchHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal 57 (758)
+.++|-||.|+|||- |+-.|
T Consensus 2 RpIVi~GPSG~GK~T--l~~~L 21 (186)
T 1ex7_A 2 RPIVISGPSGTGKST--LLKKL 21 (186)
T ss_dssp CCEEEECCTTSSHHH--HHHHH
T ss_pred CEEEEECCCCCCHHH--HHHHH
Confidence 568999999999997 55544
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=41.32 E-value=12 Score=34.71 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=15.8
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++|.|+|||- ++-.|+
T Consensus 3 ~I~i~G~~GsGKsT--~~~~L~ 22 (194)
T 1nks_A 3 IGIVTGIPGVGKST--VLAKVK 22 (194)
T ss_dssp EEEEEECTTSCHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 57899999999987 555554
No 297
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=40.87 E-value=17 Score=33.57 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.9
Q ss_pred CceEEeccCCCchHHHHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
+..+|-+|+|+|||- |+-||.|+.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 477899999999998 667787765
No 298
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=40.80 E-value=19 Score=38.12 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=18.3
Q ss_pred HHHHHHhcCCceEEeccCCCchHHH
Q 004379 27 KVIQSLQNKCNALLESPTGTGKTLC 51 (758)
Q Consensus 27 ~i~~al~~~~~~liEAPTGTGKTla 51 (758)
.+.+.-..+..+++.+++|||||+.
T Consensus 152 ~i~~~a~~~~~vli~Ge~GtGK~~l 176 (387)
T 1ny5_A 152 KIKKISCAECPVLITGESGVGKEVV 176 (387)
T ss_dssp HHHHHTTCCSCEEEECSTTSSHHHH
T ss_pred HHHHhcCCCCCeEEecCCCcCHHHH
Confidence 3333334557789999999999973
No 299
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=40.70 E-value=8.6 Score=35.66 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.1
Q ss_pred cCCceEEeccCCCchHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal 57 (758)
.+..+++++|.|+|||- ++-.|
T Consensus 3 ~g~~I~l~G~~GsGKST--~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT--QASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHH--HHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHH
Confidence 45678999999999997 44444
No 300
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=40.62 E-value=17 Score=38.35 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHH---HHHHhcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKV---IQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i---~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
|.+...|.++-+.+ .+.+-+| ..++.=+.||+|||....
T Consensus 55 f~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 55 FDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp ECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred ECCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 45666788776653 3333455 346788999999999874
No 301
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=40.60 E-value=12 Score=39.61 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.6
Q ss_pred HhcCCceEEeccCCCchHH
Q 004379 32 LQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTl 50 (758)
+..++.+++-+|||+|||-
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 4567889999999999987
No 302
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=40.42 E-value=15 Score=34.43 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=15.7
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++|.|+|||- ++-.|+
T Consensus 2 ~I~i~G~~GsGKsT--~~~~L~ 21 (205)
T 2jaq_A 2 KIAIFGTVGAGKST--ISAEIS 21 (205)
T ss_dssp EEEEECCTTSCHHH--HHHHHH
T ss_pred EEEEECCCccCHHH--HHHHHH
Confidence 47899999999997 555553
No 303
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=40.14 E-value=22 Score=35.97 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=16.8
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+++-+|.|+|||- |+..|+
T Consensus 34 ~livl~G~sGsGKST--la~~L~ 54 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTS--LRSAIF 54 (287)
T ss_dssp EEEEEECCTTSCTHH--HHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHH
Confidence 458899999999998 656664
No 304
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=39.91 E-value=13 Score=39.75 Aligned_cols=21 Identities=33% Similarity=0.442 Sum_probs=15.6
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.++|-+|||+|||- |+-.|+
T Consensus 3 ~~i~i~GptgsGKtt--la~~La 23 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQ--LSIQLA 23 (409)
T ss_dssp EEEEEEECSSSSHHH--HHHHHH
T ss_pred cEEEEECcchhhHHH--HHHHHH
Confidence 457899999999997 433443
No 305
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=39.90 E-value=13 Score=38.52 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=18.9
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
+-.+...++.+|+|+|||.-. -++++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLA--lqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLV--HALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHH--HHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHH--HHHHHh
Confidence 344566799999999999843 344443
No 306
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.82 E-value=9.3 Score=36.45 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=19.7
Q ss_pred HHHHHHHHHHh----cCCceEEeccCCCchHH
Q 004379 23 VYMEKVIQSLQ----NKCNALLESPTGTGKTL 50 (758)
Q Consensus 23 ~~~~~i~~al~----~~~~~liEAPTGTGKTl 50 (758)
++++.+.+.+. .+..+.|-+|+|+|||-
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 34555555543 45678899999999985
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=39.59 E-value=17 Score=34.95 Aligned_cols=29 Identities=28% Similarity=0.342 Sum_probs=18.2
Q ss_pred HHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 27 KVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 27 ~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
.|-=.+..|+.+.+-+|+|+|||- |+-.|
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKST--Ll~~L 43 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGT--LIKKL 43 (218)
T ss_dssp -------CCCCEEEECSTTSSHHH--HHHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHH--HHHHH
Confidence 333446678999999999999986 44444
No 308
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=38.92 E-value=18 Score=34.49 Aligned_cols=14 Identities=43% Similarity=0.525 Sum_probs=12.1
Q ss_pred cccEEEEeCCcchH
Q 004379 234 KNSILIFDEAHNLE 247 (758)
Q Consensus 234 ~~~ilIiDEAHnL~ 247 (758)
.+.+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 37899999999983
No 309
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=38.91 E-value=12 Score=35.48 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=16.2
Q ss_pred cCCceEEeccCCCchHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal 57 (758)
.|+.+++-+|+|+|||- |+-.|
T Consensus 3 ~g~~i~lvGpsGaGKST--Ll~~L 24 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST--LLKKL 24 (198)
T ss_dssp --CCEEEECCTTSSHHH--HHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHH
Confidence 56788999999999987 44444
No 310
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.87 E-value=16 Score=34.52 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=18.2
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+..+++++|.|+|||- ++-.|+
T Consensus 9 ~~~~I~l~G~~GsGKST--~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKST--QSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHH--HHHHHH
T ss_pred cCCEEEEEcCCCCCHHH--HHHHHH
Confidence 45778999999999998 555554
No 311
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=38.78 E-value=15 Score=38.71 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=21.2
Q ss_pred CceEEeccCCCchHHHHHHHHHHHHHh
Q 004379 36 CNALLESPTGTGKTLCLLCATLAWRKS 62 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~~~~ 62 (758)
+..+|-+|||.|||. |+=||.|+-.
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 577999999999999 6788988654
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=38.76 E-value=14 Score=36.55 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=15.3
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++-+|||+|||- |.-+|+
T Consensus 3 li~I~G~~GSGKST--la~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD--MAIQIA 22 (253)
T ss_dssp EEEEECCTTSSHHH--HHHHHH
T ss_pred EEEEECCCCcCHHH--HHHHHH
Confidence 46899999999987 444453
No 313
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=38.73 E-value=13 Score=40.10 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHh-------cCCceEEeccCCCchHHHHH
Q 004379 22 LVYMEKVIQSLQ-------NKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 22 ~~~~~~i~~al~-------~~~~~liEAPTGTGKTlayL 53 (758)
..++....+++. +.+..++.||.|+|||..+.
T Consensus 141 ~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 141 MAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEIL 179 (446)
T ss_dssp HHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHH
Confidence 345555555532 22567899999999999664
No 314
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=38.57 E-value=14 Score=38.12 Aligned_cols=21 Identities=43% Similarity=0.485 Sum_probs=16.1
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.++|-+|||+|||- |.-.|+
T Consensus 6 ~~i~i~GptGsGKTt--la~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD--LAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHH--HHHHHH
T ss_pred cEEEEECCCCCCHHH--HHHHHH
Confidence 368899999999998 444453
No 315
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=38.29 E-value=18 Score=34.48 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.9
Q ss_pred CceEEeccCCCchHHHHHHHHHHHHHh
Q 004379 36 CNALLESPTGTGKTLCLLCATLAWRKS 62 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~~~~ 62 (758)
+..+|-+|+|+|||- |+-||.|+..
T Consensus 24 ~~~~I~G~NgsGKSt--il~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSS--LLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHH--HHHHHHHHhc
Confidence 467899999999998 6678888765
No 316
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=38.23 E-value=26 Score=36.62 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=21.2
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
+..|...++-+|+|+|||.-.+.-+...+
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44568899999999999986665444333
No 317
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=38.10 E-value=15 Score=35.11 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=16.2
Q ss_pred HhcCCceEEeccCCCchHH
Q 004379 32 LQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTl 50 (758)
+..+..++++++.|+|||-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 4566788999999999986
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=38.01 E-value=15 Score=34.06 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=17.0
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+++++|.|+|||- ++-.|+
T Consensus 5 ~~~I~l~G~~GsGKST--~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTT--LSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHH--HHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHH
Confidence 4578999999999998 444453
No 319
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=37.84 E-value=26 Score=36.84 Aligned_cols=26 Identities=19% Similarity=0.127 Sum_probs=19.3
Q ss_pred hcCCceEEeccCCCchHHHHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+...+|-+|+|+|||.-.+.-+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 35577899999999999865544333
No 320
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=37.83 E-value=18 Score=41.15 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 18 YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 18 r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
-..|.+..+.+.++.. ++.++.|+-|+|||. .+--+++
T Consensus 177 T~dQ~~al~~~~~~~~--~~~vlta~RGRGKSa-~lG~~~a 214 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPP--GVAAVTAARGRGKSA-LAGQLIS 214 (671)
T ss_dssp CHHHHHHHHHHTTCCS--EEEEEEECTTSSHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHhhh--CeEEEecCCCCCHHH-HHHHHHH
Confidence 3578888777766553 578999999999994 4433343
No 321
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=37.81 E-value=17 Score=33.21 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.5
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++.+|.|+|||- ++-.|+
T Consensus 4 ~I~i~G~~GsGKST--~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKST--WAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHH--HHHHHH
T ss_pred EEEEecCCCCCHHH--HHHHHH
Confidence 57899999999997 444443
No 322
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=37.77 E-value=12 Score=35.82 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=16.5
Q ss_pred CCceEEeccCCCchHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal 57 (758)
+..+++++|.|+|||- ++-.|
T Consensus 4 ~~~I~l~G~~GsGKsT--~a~~L 24 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT--QAPNL 24 (220)
T ss_dssp CCEEEEECCTTSSHHH--HHHHH
T ss_pred CcEEEEECCCCCCHHH--HHHHH
Confidence 4578999999999997 44444
No 323
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.62 E-value=27 Score=47.10 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHH
Q 004379 14 PFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 14 pf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL 53 (758)
.+.+-+.|..=+-.+++++.-..-+++=+|||+|||-++=
T Consensus 885 ~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 885 HLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp TCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 3455566666667777887777778999999999999864
No 324
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=37.35 E-value=12 Score=36.20 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=17.7
Q ss_pred cCCceEEeccCCCchHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal 57 (758)
.|..+++|+|.|+|||- ++..|
T Consensus 4 ~g~~i~~eG~~g~GKst--~~~~l 25 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTT--QCNIL 25 (216)
T ss_dssp CCCEEEEEECSSSSHHH--HHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHH
Confidence 57889999999999987 44444
No 325
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=37.33 E-value=40 Score=32.80 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=18.4
Q ss_pred ceEEeccCCCchHHHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~~~ 60 (758)
++++-++.|+|||...+.-|...+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999998775554433
No 326
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.29 E-value=11 Score=34.94 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=13.9
Q ss_pred CCceEEeccCCCchHH
Q 004379 35 KCNALLESPTGTGKTL 50 (758)
Q Consensus 35 ~~~~liEAPTGTGKTl 50 (758)
+..+++++|+|+|||-
T Consensus 3 ~~~I~l~G~~GsGKsT 18 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGT 18 (196)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3568999999999987
No 327
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=37.16 E-value=13 Score=34.03 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=20.1
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..|..+.+-+|.|+|||- |+-+|+
T Consensus 30 i~~Ge~v~L~G~nGaGKTT--Llr~l~ 54 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTT--LTRGML 54 (158)
T ss_dssp CSSCEEEEEECSTTSSHHH--HHHHHH
T ss_pred cCCCCEEEEECCCCCCHHH--HHHHHH
Confidence 3677889999999999997 555554
No 328
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.06 E-value=11 Score=36.66 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.6
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.|..+.+|+|.|+|||-
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 35678999999999997
No 329
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=36.96 E-value=9.4 Score=37.08 Aligned_cols=19 Identities=37% Similarity=0.443 Sum_probs=12.3
Q ss_pred HhcCCceEEeccCCCchHH
Q 004379 32 LQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTl 50 (758)
+..|+.+.+-+|+|+|||-
T Consensus 24 v~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp EECCCEEEEECSCC----C
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3567889999999999986
No 330
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=36.89 E-value=30 Score=32.54 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=19.2
Q ss_pred HHHHHHHHHh-----cCCceEEeccCCCchHH
Q 004379 24 YMEKVIQSLQ-----NKCNALLESPTGTGKTL 50 (758)
Q Consensus 24 ~~~~i~~al~-----~~~~~liEAPTGTGKTl 50 (758)
.++.+.+.+. .+..+.+-+|.|+|||-
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKst 37 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTT 37 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHH
Confidence 4455555554 33568899999999987
No 331
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=36.47 E-value=14 Score=34.35 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=19.8
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..|+.+++-+|.|+|||- |+-.|+
T Consensus 6 i~~g~~i~l~G~~GsGKST--l~~~La 30 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST--IAEALA 30 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH--HHHHHH
T ss_pred CCCCeEEEEECCCCCCHHH--HHHHHH
Confidence 4567889999999999997 555553
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=36.35 E-value=19 Score=34.13 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=18.3
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+..+++++|.|+|||- ++-.|+
T Consensus 8 ~~~~I~l~G~~GsGKsT--~~~~L~ 30 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKST--QSRKLV 30 (215)
T ss_dssp CCCEEEEEESTTSSHHH--HHHHHH
T ss_pred CCcEEEEECCCCCCHHH--HHHHHH
Confidence 56789999999999998 555553
No 333
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=36.25 E-value=17 Score=35.29 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=18.0
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+..+++|+|.|+|||- ++..|+
T Consensus 25 ~g~~i~i~G~~GsGKsT--~~~~l~ 47 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTT--VINEVY 47 (229)
T ss_dssp CCEEEEEECCTTSCHHH--HHHHHH
T ss_pred CCeEEEEEcCCCCCHHH--HHHHHH
Confidence 56789999999999987 445553
No 334
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=36.12 E-value=12 Score=36.02 Aligned_cols=17 Identities=35% Similarity=0.517 Sum_probs=15.0
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.|..+++|+|.|+|||-
T Consensus 5 ~g~~i~~eG~~gsGKsT 21 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKST 21 (213)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CceEEEEEcCCCCCHHH
Confidence 46788999999999987
No 335
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=36.11 E-value=20 Score=34.81 Aligned_cols=22 Identities=36% Similarity=0.501 Sum_probs=17.1
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
...+++++|.|+|||- ++-.|+
T Consensus 16 ~~~I~l~G~~GsGKsT--~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGT--QAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHH--HHHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHHH
Confidence 3568999999999997 555554
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=36.08 E-value=13 Score=34.65 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=14.9
Q ss_pred ceEEeccCCCchHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal 57 (758)
.+++++|.|+|||- ++-.|
T Consensus 2 ~I~l~G~~GsGKsT--~~~~L 20 (197)
T 2z0h_A 2 FITFEGIDGSGKST--QIQLL 20 (197)
T ss_dssp EEEEECSTTSSHHH--HHHHH
T ss_pred EEEEECCCCCCHHH--HHHHH
Confidence 46899999999987 44444
No 337
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=35.94 E-value=13 Score=35.82 Aligned_cols=17 Identities=29% Similarity=0.390 Sum_probs=15.0
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.|..+++|+|.|+|||-
T Consensus 2 ~g~~i~~eG~~gsGKsT 18 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTT 18 (213)
T ss_dssp CCCEEEEEECTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 36788999999999987
No 338
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=35.60 E-value=34 Score=42.09 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=17.0
Q ss_pred CceEEeccCCCchHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal 57 (758)
+..+|||+-|||||.++-.-.+
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~l 38 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYL 38 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHH
Confidence 4569999999999997654433
No 339
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=35.18 E-value=12 Score=36.44 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=15.0
Q ss_pred hcCCceEEeccCCCchHHHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~pal 57 (758)
..|..+++|+|.|+|||- ++-.|
T Consensus 23 ~~g~~I~~eG~~GsGKsT--~~~~l 45 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTT--HLQWF 45 (227)
T ss_dssp CCCCEEEEECCC---CHH--HHHHH
T ss_pred cCCeEEEEECCCCCCHHH--HHHHH
Confidence 467889999999999987 44444
No 340
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=35.18 E-value=15 Score=34.14 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=16.6
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
++.+.+-+|+|+|||- |+-.|+
T Consensus 1 ~~ii~l~GpsGaGKsT--l~~~L~ 22 (186)
T 3a00_A 1 SRPIVISGPSGTGKST--LLKKLF 22 (186)
T ss_dssp CCCEEEESSSSSSHHH--HHHHHH
T ss_pred CCEEEEECCCCCCHHH--HHHHHH
Confidence 3567899999999997 444443
No 341
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=34.68 E-value=22 Score=33.48 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=18.1
Q ss_pred hcCCceEEeccCCCchHHHHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+..+++-+|.|+|||- |+-+|+
T Consensus 27 ~~g~~i~l~G~~GsGKST--l~~~L~ 50 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTT--IAHGVA 50 (200)
T ss_dssp -CCCEEEEECCTTSCHHH--HHHHHH
T ss_pred CCCcEEEEECCCCCCHHH--HHHHHH
Confidence 356889999999999997 444453
No 342
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=34.63 E-value=23 Score=32.08 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=17.0
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+++-+|.|+|||- |+-.|+
T Consensus 4 ~~~i~l~G~~GsGKST--l~~~La 25 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST--IGRQLA 25 (173)
T ss_dssp CCCEEEECCTTSCHHH--HHHHHH
T ss_pred CCeEEEECCCCCCHHH--HHHHHH
Confidence 5678999999999987 444443
No 343
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.63 E-value=17 Score=38.82 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHH---HHHhcC--CceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVI---QSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~---~al~~~--~~~liEAPTGTGKTlayL 53 (758)
|.|-..|.++-+.|. +.+-+| ..++.=+.||+|||....
T Consensus 114 F~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 114 FHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp ECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 455567777665433 333345 336788999999999874
No 344
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=34.62 E-value=13 Score=43.72 Aligned_cols=25 Identities=36% Similarity=0.500 Sum_probs=19.9
Q ss_pred cCCceEEeccCCCchHHHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
.++++++.+|+|||||. |+-+++..
T Consensus 510 ~~~~vLL~GppGtGKT~--Lakala~~ 534 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTL--LAKAIANE 534 (806)
T ss_dssp CCCCCCCBCCTTSSHHH--HHHHHHHH
T ss_pred CCceeEEECCCCCCHHH--HHHHHHHH
Confidence 45779999999999999 66666643
No 345
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=34.58 E-value=11 Score=34.70 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.9
Q ss_pred hcCCceEEeccCCCchHH
Q 004379 33 QNKCNALLESPTGTGKTL 50 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTl 50 (758)
..|+.+.+-+|.|+|||-
T Consensus 7 ~~gei~~l~G~nGsGKST 24 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKST 24 (171)
T ss_dssp ESSEEEEEECCTTSCHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 467888999999999998
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.39 E-value=22 Score=33.40 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=16.4
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+++++|.|+|||- ++-.|+
T Consensus 21 ~~I~l~G~~GsGKST--~a~~La 41 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGT--QAVKLA 41 (201)
T ss_dssp CEEEEECCTTSSHHH--HHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHH
Confidence 458999999999998 555553
No 347
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=34.34 E-value=14 Score=34.11 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=14.6
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.|..++++++.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45678999999999986
No 348
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=34.31 E-value=29 Score=36.10 Aligned_cols=23 Identities=17% Similarity=-0.080 Sum_probs=17.8
Q ss_pred hcCCceEEeccCCCchHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCA 55 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~p 55 (758)
..|...++-+|+|+|||.-.+.-
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~l 142 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTL 142 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34577899999999999955533
No 349
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=34.26 E-value=15 Score=33.57 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.9
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+++-+|.|+|||- +.-+|+
T Consensus 3 ~~~i~l~G~~GsGKST--~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSG--IVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHH--HHHHHH
T ss_pred ceEEEEECCCCCCHHH--HHHHHH
Confidence 4568999999999998 444553
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=33.85 E-value=23 Score=32.77 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=17.8
Q ss_pred cCCceEEeccCCCchHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.++++-+|.|+|||- ++-.|+
T Consensus 9 ~~~~I~l~G~~GsGKST--v~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTS--MAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCCEEEEECCCCCCHHH--HHHHHH
Confidence 35678999999999998 445553
No 351
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=33.76 E-value=12 Score=35.43 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.4
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++|.|+|||- |+-.|+
T Consensus 2 ~I~i~G~~GsGKsT--l~~~L~ 21 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT--LVEKLS 21 (214)
T ss_dssp EEEEEEEEEEEHHH--HHHHHH
T ss_pred EEEEEcCCCCCHHH--HHHHHH
Confidence 57899999999987 444443
No 352
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=33.75 E-value=29 Score=38.32 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.6
Q ss_pred cCCceEEeccCCCchHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLC 54 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~ 54 (758)
.+.|+++-++||+|||-.+-+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~ 186 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNA 186 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHH
Confidence 457999999999999987643
No 353
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=33.75 E-value=23 Score=34.21 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=19.4
Q ss_pred HHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 30 QSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 30 ~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+..|+.+++-+|.|+|||- |+-+|.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKST--Llk~L~ 37 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSS--LIQALL 37 (219)
T ss_dssp ----CCCEEEEECCTTSCHHH--HHHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHH--HHHHHh
Confidence 345678899999999999998 555554
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=33.63 E-value=21 Score=33.06 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.6
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.+..++++++.|+|||-
T Consensus 12 ~~~~i~l~G~~GsGKsT 28 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTT 28 (186)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 34678999999999987
No 355
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=33.58 E-value=14 Score=36.67 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.9
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
++..+++|++.|+|||-
T Consensus 23 ~~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKST 39 (263)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 44678999999999997
No 356
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=33.13 E-value=22 Score=35.56 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=20.4
Q ss_pred HHhcCCceEEeccCCCchHHHHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLLCAT 56 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL~pa 56 (758)
.+..|...+|-+|+|+|||.-.+.-+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 35677889999999999998555443
No 357
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=32.91 E-value=24 Score=33.73 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=16.5
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+++++|.|+|||- ++..|+
T Consensus 6 ~~I~l~G~~GsGKsT--~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGT--QCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHH--HHHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHHH
Confidence 568999999999997 555554
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=32.91 E-value=17 Score=33.00 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=13.4
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
+.+++.+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 468999999999997
No 359
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=32.90 E-value=15 Score=34.62 Aligned_cols=15 Identities=20% Similarity=0.259 Sum_probs=13.4
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
..+++++|.|+|||-
T Consensus 16 ~~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468999999999997
No 360
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=32.85 E-value=16 Score=33.14 Aligned_cols=15 Identities=27% Similarity=0.313 Sum_probs=13.8
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
+++++.++.|+|||-
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 678999999999997
No 361
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=32.71 E-value=25 Score=33.01 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=16.3
Q ss_pred CceEEeccCCCchHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal 57 (758)
..+++.+|.|+|||- |+-.|
T Consensus 19 ~~I~l~G~~GsGKST--la~~L 38 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS--VGEAI 38 (202)
T ss_dssp SCEEEECSTTSCHHH--HHHHH
T ss_pred eEEEEECCCCCCHHH--HHHHH
Confidence 578999999999997 44444
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=32.50 E-value=22 Score=36.97 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.4
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
..++|-+|||+|||-
T Consensus 8 ~lI~I~GptgSGKTt 22 (340)
T 3d3q_A 8 FLIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred ceEEEECCCcCcHHH
Confidence 468899999999998
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=32.43 E-value=17 Score=33.77 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=14.8
Q ss_pred ceEEeccCCCchHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal 57 (758)
.+++++|.|+|||- ++-.|
T Consensus 2 ~I~l~G~~GsGKsT--~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTT--QAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHH--HHHHH
T ss_pred EEEEECCCCCCHHH--HHHHH
Confidence 47899999999997 44444
No 364
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=32.42 E-value=16 Score=35.82 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=17.4
Q ss_pred cCCceEEeccCCCchHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal 57 (758)
.+..+++|+|.|+|||- ++..|
T Consensus 26 ~~~~i~~eG~~GsGKsT--~~~~l 47 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKST--AIQVV 47 (236)
T ss_dssp CCCEEEEEESTTSCHHH--HHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHH
Confidence 46789999999999997 44444
No 365
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=32.39 E-value=33 Score=35.94 Aligned_cols=28 Identities=18% Similarity=0.005 Sum_probs=20.2
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+..|...+|-+|+|+|||.-.+.-+...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3345778999999999998655444433
No 366
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=31.79 E-value=24 Score=32.21 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=16.4
Q ss_pred CCceEEeccCCCchHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal 57 (758)
+..+++.+|.|+|||- |+-.|
T Consensus 8 g~~i~l~G~~GsGKST--l~~~l 28 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSA--VASEV 28 (175)
T ss_dssp SEEEEEECSTTSCHHH--HHHHH
T ss_pred CcEEEEEcCCCCCHHH--HHHHH
Confidence 5678999999999987 44444
No 367
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=31.78 E-value=54 Score=33.21 Aligned_cols=19 Identities=37% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCceEEeccCCCchHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL 53 (758)
++.+++-+|+|+|||-...
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678888999999997443
No 368
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=31.14 E-value=43 Score=35.08 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 23 VYMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 23 ~~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
++...+...-.....+++.+++||||++
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~ 167 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEI 167 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHH
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHH
Confidence 3334444444556789999999999997
No 369
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=31.04 E-value=17 Score=34.56 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=14.7
Q ss_pred ceEEeccCCCchHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal 57 (758)
.+++.+|.|+|||- ++-.|
T Consensus 2 ~I~l~G~~GsGKsT--~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT--QAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHH--HHHHH
T ss_pred EEEEECCCCCCHHH--HHHHH
Confidence 36899999999987 44444
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=30.94 E-value=16 Score=33.70 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=13.4
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
..+++++|.|+|||-
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 468899999999998
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=30.82 E-value=25 Score=33.38 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=14.9
Q ss_pred ceEEeccCCCchHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal 57 (758)
.+++.+|.|+|||- ++-.|
T Consensus 2 ~I~l~G~~GsGKsT--~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT--QGERI 20 (216)
T ss_dssp EEEEECSTTSSHHH--HHHHH
T ss_pred EEEEECCCCCCHHH--HHHHH
Confidence 36899999999987 54444
No 372
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=30.56 E-value=29 Score=36.42 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=24.3
Q ss_pred HHHHHHHHHH----HHHHhcC--CceEEeccCCCchHHHHH
Q 004379 19 DCQLVYMEKV----IQSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 19 ~~Q~~~~~~i----~~al~~~--~~~liEAPTGTGKTlayL 53 (758)
..|.++-+.+ .+.+-+| ..++.=+.||+|||....
T Consensus 83 ~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 3587766554 3444455 346888999999999875
No 373
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=30.42 E-value=18 Score=34.91 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=15.4
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++|.|+|||- ++..|+
T Consensus 2 ~I~l~G~~GsGKsT--~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGT--QGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 47899999999987 545453
No 374
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.30 E-value=22 Score=34.41 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=19.3
Q ss_pred HHhcCCceEEeccCCCchHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL 53 (758)
.+..|+...+-+|+|+|||.-..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 56778999999999999998443
No 375
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=30.21 E-value=27 Score=36.72 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.7
Q ss_pred ceEEeccCCCchHHHHHHHHHHHHHh
Q 004379 37 NALLESPTGTGKTLCLLCATLAWRKS 62 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~~~~~ 62 (758)
..+|-+|||+|||- |+=||.|+..
T Consensus 25 ~~~i~G~NGaGKTT--ll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSS--LFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHHHhc
Confidence 67899999999996 5577888764
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=29.85 E-value=18 Score=34.58 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=15.3
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
.+++++|.|+|||- ++-.|+
T Consensus 2 ~I~l~G~~GsGKsT--~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGT--QAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHH--HHHHHH
T ss_pred EEEEECCCCCCHHH--HHHHHH
Confidence 36899999999987 444453
No 377
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=29.56 E-value=16 Score=33.63 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=12.3
Q ss_pred CCceEEeccCCCchHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal 57 (758)
+..++++++.|+|||- ++-.|
T Consensus 5 ~~~I~l~G~~GsGKST--~a~~L 25 (183)
T 2vli_A 5 SPIIWINGPFGVGKTH--TAHTL 25 (183)
T ss_dssp CCEEEEECCC----CH--HHHHH
T ss_pred CeEEEEECCCCCCHHH--HHHHH
Confidence 4578999999999997 44444
No 378
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=29.45 E-value=36 Score=35.61 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHH----HHHHhcCCc--eEEeccCCCchHHHHH
Q 004379 17 AYDCQLVYMEKV----IQSLQNKCN--ALLESPTGTGKTLCLL 53 (758)
Q Consensus 17 ~r~~Q~~~~~~i----~~al~~~~~--~liEAPTGTGKTlayL 53 (758)
++..|.++-+.+ .+.+-+|.+ ++.=+.||+|||....
T Consensus 69 ~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 69 KYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred ccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 345688775544 444445644 5788999999999874
No 379
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=29.39 E-value=17 Score=35.41 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=16.3
Q ss_pred CCceEEeccCCCchHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal 57 (758)
+..+++|++.|+|||- ++-.|
T Consensus 2 ~~~i~~~G~~g~GKtt--~~~~l 22 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST--FVKLL 22 (241)
T ss_dssp CEEEEEEECTTSSHHH--HHHHH
T ss_pred CeEEEEEcCCCCCHHH--HHHHH
Confidence 3568999999999997 44444
No 380
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=29.12 E-value=51 Score=33.85 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCC------ceEEeccCCCchHHHHHHHHHH
Q 004379 21 QLVYMEKVIQSLQNKC------NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 21 Q~~~~~~i~~al~~~~------~~liEAPTGTGKTlayL~pal~ 58 (758)
..+-...+...+.++. .+.+-+|+|+|||- |+-.|.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKST--l~~~L~ 113 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKST--TSRVLK 113 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHH--HHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHH--HHHHHH
Confidence 3344555666665554 57899999999997 555554
No 381
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=29.06 E-value=31 Score=32.64 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=18.5
Q ss_pred HHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+..|+.+.+=+|.|+|||- |+-+|+
T Consensus 16 ~i~~Gei~~l~GpnGsGKST--Ll~~l~ 41 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST--VVRCLR 41 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH--HHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHH--HHHHHH
Confidence 57788999999999999997 444443
No 382
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=28.97 E-value=30 Score=33.77 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=17.5
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+++.+|.|+|||- |+-.|+
T Consensus 27 ~~~i~l~G~~GsGKST--l~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT--VCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHH--HHHHHH
T ss_pred CcEEEEECCCCCCHHH--HHHHHH
Confidence 4689999999999997 555554
No 383
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=28.92 E-value=20 Score=32.38 Aligned_cols=19 Identities=21% Similarity=0.176 Sum_probs=14.7
Q ss_pred ceEEeccCCCchHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal 57 (758)
.++++++.|+|||- ++-.|
T Consensus 2 ~I~l~G~~GsGKsT--~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKST--VGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHH--HHHHH
T ss_pred eEEEECCCCCCHHH--HHHHH
Confidence 47899999999997 44444
No 384
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=28.28 E-value=20 Score=35.61 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=16.8
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
...++++++.|+|||- ++-.|+
T Consensus 4 ~~lIvl~G~pGSGKST--la~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST--FSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHH--HHHHHH
T ss_pred CEEEEEEcCCCCCHHH--HHHHHH
Confidence 3568999999999997 444443
No 385
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=28.16 E-value=24 Score=33.35 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=16.8
Q ss_pred cCCceEEeccCCCchHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal 57 (758)
.+..+.+-+|+|+|||- |+-.|
T Consensus 20 ~~~~i~i~G~~GsGKST--l~~~L 41 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTT--LAKNL 41 (207)
T ss_dssp CCEEEEEEESTTSSHHH--HHHHH
T ss_pred CCeEEEEECCCCCCHHH--HHHHH
Confidence 45668899999999997 44444
No 386
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=28.04 E-value=33 Score=37.04 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHH----HHHhcC--CceEEeccCCCchHHHHH
Q 004379 18 YDCQLVYMEKVI----QSLQNK--CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 18 r~~Q~~~~~~i~----~al~~~--~~~liEAPTGTGKTlayL 53 (758)
+..|.++-+.+. +.+-+| ..++.=+.||+|||....
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 457888766553 333455 336788999999999874
No 387
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=28.01 E-value=32 Score=36.17 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=24.6
Q ss_pred HHHHHHHHHHH----HHHhcCC--ceEEeccCCCchHHHHH
Q 004379 19 DCQLVYMEKVI----QSLQNKC--NALLESPTGTGKTLCLL 53 (758)
Q Consensus 19 ~~Q~~~~~~i~----~al~~~~--~~liEAPTGTGKTlayL 53 (758)
..|.++-+.+. +.+-+|. .++.=+.||+|||....
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 56888776553 3444553 36788999999998774
No 388
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=27.95 E-value=87 Score=33.71 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.8
Q ss_pred CceEEeccCCCchHHHHH
Q 004379 36 CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL 53 (758)
..+++-+|+|+|||-...
T Consensus 101 ~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 467899999999998544
No 389
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=27.26 E-value=41 Score=31.47 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=15.5
Q ss_pred hcCCceEEeccCCCchHH
Q 004379 33 QNKCNALLESPTGTGKTL 50 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTl 50 (758)
..+..+++-+|.|+|||-
T Consensus 23 ~~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKST 40 (200)
T ss_dssp SCCEEEEEECSTTSSHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 456788999999999986
No 390
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=27.17 E-value=1e+02 Score=29.11 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=14.0
Q ss_pred CCceEEeccCCCchHH
Q 004379 35 KCNALLESPTGTGKTL 50 (758)
Q Consensus 35 ~~~~liEAPTGTGKTl 50 (758)
++.+++|++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 3568999999999987
No 391
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=27.13 E-value=24 Score=33.71 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=18.3
Q ss_pred HHhcCCceEEeccCCCchHHHHH
Q 004379 31 SLQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 31 al~~~~~~liEAPTGTGKTlayL 53 (758)
.+..|+...+-+|+|+|||.-..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 34567889999999999997443
No 392
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=27.07 E-value=63 Score=31.03 Aligned_cols=28 Identities=14% Similarity=-0.017 Sum_probs=21.5
Q ss_pred cCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 34 NKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
.|+..++.+|-|+|||.++|=-+..+..
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3456678889999999998877666544
No 393
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=26.56 E-value=22 Score=34.49 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=14.7
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.+..+++|++.|+|||-
T Consensus 20 ~~~~i~~~G~~g~GKst 36 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTT 36 (223)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35678999999999987
No 394
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}
Probab=26.26 E-value=70 Score=29.68 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCceEEeccCCCchHHHHH
Q 004379 15 FEAYDCQLVYMEKVIQSLQN--KCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 15 f~~r~~Q~~~~~~i~~al~~--~~~~liEAPTGTGKTlayL 53 (758)
|.||+.-..+++.+.+.+.. ...-++|-++|||-....|
T Consensus 8 ~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l 48 (215)
T 4dzr_A 8 LIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSI 48 (215)
T ss_dssp GSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHH
Confidence 56888888899999999863 4667999999999766555
No 395
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=26.23 E-value=57 Score=33.55 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=19.2
Q ss_pred ceEEeccCCCchHHHHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
..++-+|+|+|||.-.|-.+...++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6789999999999877765554444
No 396
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=26.17 E-value=30 Score=36.58 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.5
Q ss_pred cCCceEEeccCCCchHHHH
Q 004379 34 NKCNALLESPTGTGKTLCL 52 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTlay 52 (758)
.+.|+++-+|||+|||...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHH
Confidence 5689999999999999744
No 397
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=25.91 E-value=31 Score=31.92 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=16.4
Q ss_pred CceEEeccCCCchHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+++-+|.|+|||- |+-.|+
T Consensus 3 ~ii~l~G~~GaGKST--l~~~L~ 23 (189)
T 2bdt_A 3 KLYIITGPAGVGKST--TCKRLA 23 (189)
T ss_dssp EEEEEECSTTSSHHH--HHHHHH
T ss_pred eEEEEECCCCCcHHH--HHHHHh
Confidence 467889999999998 555554
No 398
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=25.66 E-value=39 Score=35.33 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=23.8
Q ss_pred HHHHHHHHHH----HHHHhcCCc--eEEeccCCCchHHHHH
Q 004379 19 DCQLVYMEKV----IQSLQNKCN--ALLESPTGTGKTLCLL 53 (758)
Q Consensus 19 ~~Q~~~~~~i----~~al~~~~~--~liEAPTGTGKTlayL 53 (758)
..|.++-+.+ .+.+-+|.+ ++.=+.||+|||....
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 4677766554 334445533 5778999999999774
No 399
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=25.32 E-value=57 Score=33.14 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=16.8
Q ss_pred CCceEEeccCCCchHHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLAW 59 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~~ 59 (758)
+..+.+=+|+|+|||- |+..|+.
T Consensus 100 g~vi~lvG~nGsGKTT--ll~~Lag 122 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTT--SLGKLAH 122 (302)
T ss_dssp CEEEEEECCTTSCHHH--HHHHHHH
T ss_pred CcEEEEEcCCCCCHHH--HHHHHHH
Confidence 3567899999999998 4444543
No 400
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=25.21 E-value=22 Score=34.73 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=32.1
Q ss_pred CCeeeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 1 ~~~~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
|+.+.+.++.+.|+-...+ ..+.|-=.+..|+...+-+|.|+|||- |+-+|
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST--Ll~~l 51 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSS--LLSAL 51 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHH--HHHHH
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHH--HHHHH
Confidence 6678888888888521111 111222224578899999999999987 44444
No 401
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=25.05 E-value=72 Score=31.61 Aligned_cols=16 Identities=6% Similarity=0.009 Sum_probs=10.3
Q ss_pred cCCceEEeccCCCchH
Q 004379 34 NKCNALLESPTGTGKT 49 (758)
Q Consensus 34 ~~~~~liEAPTGTGKT 49 (758)
.|...++.+++|+|||
T Consensus 20 ~gs~~li~g~p~~~~~ 35 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK 35 (260)
T ss_dssp TCEEEEEECSGGGCHH
T ss_pred CCcEEEEEeCCCccHH
Confidence 4466788856666665
No 402
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=24.85 E-value=34 Score=32.23 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.4
Q ss_pred cCCceEEeccCCCchHH
Q 004379 34 NKCNALLESPTGTGKTL 50 (758)
Q Consensus 34 ~~~~~liEAPTGTGKTl 50 (758)
.+..+.+-+|+|+|||-
T Consensus 5 ~~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTT 21 (211)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CcEEEEEECCCCCCHHH
Confidence 45678899999999986
No 403
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.76 E-value=56 Score=30.94 Aligned_cols=34 Identities=18% Similarity=0.152 Sum_probs=23.1
Q ss_pred HHHHHhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 28 VIQSLQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 28 i~~al~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
+..+=.++..+++--|+|.|||-+.+--|+.-+.
T Consensus 21 ~~~~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g 54 (196)
T 1g5t_A 21 VAQAQEERGIIIVFTGNGKGKTTAAFGTAARAVG 54 (196)
T ss_dssp ------CCCCEEEEESSSSCHHHHHHHHHHHHHH
T ss_pred hhhccccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3333345678999999999999999977775443
No 404
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=24.38 E-value=24 Score=33.57 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=16.1
Q ss_pred CCceEEeccCCCchHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal 57 (758)
+..+.|++|.|+|||- ++-.|
T Consensus 4 ~~~I~i~G~~GSGKST--~~~~L 24 (218)
T 1vht_A 4 RYIVALTGGIGSGKST--VANAF 24 (218)
T ss_dssp CEEEEEECCTTSCHHH--HHHHH
T ss_pred ceEEEEECCCCCCHHH--HHHHH
Confidence 3468899999999997 44444
No 405
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=23.95 E-value=31 Score=35.24 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=17.8
Q ss_pred hcCCceEEeccCCCchHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCA 55 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~p 55 (758)
..|...++-+|+|+|||.-.+.-
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~l 118 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQS 118 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHH
Confidence 34577899999999999855533
No 406
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=23.94 E-value=30 Score=33.74 Aligned_cols=24 Identities=17% Similarity=0.385 Sum_probs=19.3
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+..|+.+.+=+|.|+|||- |+-+|
T Consensus 28 i~~Ge~~~iiG~nGsGKST--Ll~~l 51 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST--MLNII 51 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCcHHH--HHHHH
Confidence 4578889999999999996 55555
No 407
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=23.63 E-value=64 Score=34.65 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.3
Q ss_pred CceEEeccCCCchHHHHH
Q 004379 36 CNALLESPTGTGKTLCLL 53 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL 53 (758)
..+++-+|+|+|||-...
T Consensus 98 ~vI~lvG~~GsGKTTt~~ 115 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAG 115 (433)
T ss_dssp EEEEECCCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998444
No 408
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=23.51 E-value=25 Score=34.18 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=29.3
Q ss_pred eeeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 3 ~~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
.+.+.++.+.|+-...+ ..+.|-=.+..|+...+-+|.|+|||- |+-+|
T Consensus 6 ~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKST--Ll~~l 54 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTS--LLMMI 54 (229)
T ss_dssp EEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHH--HHHHH
T ss_pred eEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHH--HHHHH
Confidence 45667777766421111 111122223567889999999999997 54444
No 409
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=23.20 E-value=27 Score=33.59 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.4
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+..|+...+-+|.|+|||- |+-+|
T Consensus 32 i~~Ge~~~iiG~NGsGKST--Llk~l 55 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTT--LLKTI 55 (214)
T ss_dssp EETTCCEEEECCTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHH
Confidence 4578899999999999997 54545
No 410
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=22.83 E-value=44 Score=34.51 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=20.2
Q ss_pred CceEEeccCCCchHHHHHHHHHHHHHh
Q 004379 36 CNALLESPTGTGKTLCLLCATLAWRKS 62 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~~~~ 62 (758)
+.-+|-+|+|+|||- |+=|+.|+..
T Consensus 24 ~~~~i~G~NGsGKS~--lleAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSS--LLDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHhc
Confidence 566899999999999 6677877664
No 411
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=22.78 E-value=47 Score=33.55 Aligned_cols=15 Identities=27% Similarity=0.627 Sum_probs=12.7
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
..+.|-+|+|+|||-
T Consensus 32 ~ii~I~G~sGsGKST 46 (290)
T 1odf_A 32 LFIFFSGPQGSGKSF 46 (290)
T ss_dssp EEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 456799999999986
No 412
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=22.77 E-value=32 Score=34.10 Aligned_cols=50 Identities=14% Similarity=0.274 Sum_probs=30.3
Q ss_pred eeeEcCeeecCCCCC-CHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 3 TYKIRGIDVEFPFEA-YDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 3 ~~~i~~i~~~Fpf~~-r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
.+.+.++.+.|+-.. .+ ....|-=.+..|+.+.+-+|.|+|||- |+-+|+
T Consensus 17 ~l~i~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST--Ll~~l~ 67 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHR----TLKSINFFIPSGTTCALVGHTGSGKST--IAKLLY 67 (260)
T ss_dssp CEEEEEEEECCTTCCSSC----SEEEEEEEECTTCEEEEECSTTSSHHH--HHHHHT
T ss_pred eEEEEEEEEEeCCCCcCc----eeEeeEEEECCCCEEEEECCCCCCHHH--HHHHHh
Confidence 356677777664211 11 111222234578899999999999998 555553
No 413
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=22.74 E-value=59 Score=36.29 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.5
Q ss_pred CCceEEeccCCCchHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCA 55 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~p 55 (758)
..|++|-+.||+|||.++-.-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tl 234 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAM 234 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHH
Confidence 478999999999999876543
No 414
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=22.60 E-value=75 Score=32.32 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhc----------CCceEEeccCCCchHHHH
Q 004379 20 CQLVYMEKVIQSLQN----------KCNALLESPTGTGKTLCL 52 (758)
Q Consensus 20 ~Q~~~~~~i~~al~~----------~~~~liEAPTGTGKTlay 52 (758)
.+..+.+.+.+.+.. ++.+++-+|+|+|||-..
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHH
Confidence 444455555555422 245788999999999743
No 415
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=22.54 E-value=27 Score=34.44 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=19.4
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+..|+.+.+-+|.|+|||- |+-+|
T Consensus 32 i~~Ge~~~i~G~nGsGKST--Ll~~l 55 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKST--LTKLI 55 (247)
T ss_dssp EETTCEEEEECSTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHH
Confidence 4578899999999999998 54545
No 416
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=22.49 E-value=39 Score=31.50 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.8
Q ss_pred CCceEEeccCCCchHH
Q 004379 35 KCNALLESPTGTGKTL 50 (758)
Q Consensus 35 ~~~~liEAPTGTGKTl 50 (758)
|.-+++-+|.|+|||-
T Consensus 16 G~gvli~G~SGaGKSt 31 (181)
T 3tqf_A 16 KMGVLITGEANIGKSE 31 (181)
T ss_dssp TEEEEEEESSSSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 4568999999999995
No 417
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=22.47 E-value=4.3 Score=43.12 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=32.7
Q ss_pred CCeeeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 1 ~~~~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
|+.+.+.++.+.|+=. ...+.|-=.+..|+.+.+=+|.|+|||- |+-+|+
T Consensus 1 M~~l~~~~l~~~yg~~------~~L~~vsl~i~~Ge~~~llGpsGsGKST--LLr~ia 50 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEV------VVSKDINLDIHEGEFVVFVGPSGCGKST--LLRMIA 50 (381)
T ss_dssp -CCEEEEEEEEEETTE------EEEEEEEEEECTTCEEEEECCTTSSHHH--HHHHHH
T ss_pred CCEEEEEeEEEEECCE------EEEeeeEEEECCCCEEEEEcCCCchHHH--HHHHHH
Confidence 7778888988888521 0111122223578899999999999998 555554
No 418
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=22.27 E-value=26 Score=32.70 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=11.1
Q ss_pred cccEEEEeCCcch
Q 004379 234 KNSILIFDEAHNL 246 (758)
Q Consensus 234 ~~~ilIiDEAHnL 246 (758)
+.++|||||||.+
T Consensus 76 ~~dvviIDE~Q~~ 88 (184)
T 2orw_A 76 DTRGVFIDEVQFF 88 (184)
T ss_dssp TEEEEEECCGGGS
T ss_pred CCCEEEEECcccC
Confidence 4569999999996
No 419
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=22.26 E-value=1.6e+02 Score=27.38 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=11.9
Q ss_pred eEEeccCCCchHH
Q 004379 38 ALLESPTGTGKTL 50 (758)
Q Consensus 38 ~liEAPTGTGKTl 50 (758)
+++|++-|+|||-
T Consensus 3 I~~EG~DGsGKsT 15 (197)
T 3hjn_A 3 ITFEGIDGSGKST 15 (197)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5799999999997
No 420
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=21.65 E-value=97 Score=31.41 Aligned_cols=22 Identities=32% Similarity=0.302 Sum_probs=16.5
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+.+=+|+|+|||- |+..|+
T Consensus 102 g~vi~lvG~nGsGKTT--ll~~La 123 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTT--TIAKLG 123 (304)
T ss_dssp SSEEEEECSTTSSHHH--HHHHHH
T ss_pred CeEEEEECCCCCcHHH--HHHHHH
Confidence 4677788999999987 444454
No 421
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=21.64 E-value=42 Score=34.37 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=20.4
Q ss_pred CceEEeccCCCchHHHHHHHHHHHHH
Q 004379 36 CNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 36 ~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
+..+|-+|+|+|||- |+-||.|+.
T Consensus 25 g~~~i~G~NGsGKS~--ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKSN--IIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCSTH--HHHHHHHTS
T ss_pred CcEEEECCCCCcHHH--HHHHHHHHh
Confidence 478999999999998 778888763
No 422
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=21.60 E-value=53 Score=37.93 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHH---HHHHhcCCc--eEEeccCCCchHHHH
Q 004379 15 FEAYDCQLVYMEKV---IQSLQNKCN--ALLESPTGTGKTLCL 52 (758)
Q Consensus 15 f~~r~~Q~~~~~~i---~~al~~~~~--~liEAPTGTGKTlay 52 (758)
|.+-..|.++-+.| .+.+-+|.+ ++.=+.||+|||...
T Consensus 438 f~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 438 FEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp ECSSCCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 44555677764433 333345533 677799999999976
No 423
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=21.54 E-value=42 Score=33.45 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=28.7
Q ss_pred eeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 4 ~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+.+.++.+.|+ .++ ..+.|-=.+..|+.+.+-+|.|+|||- |+-+|+
T Consensus 21 l~~~~l~~~y~--~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKST--Llk~l~ 67 (267)
T 2zu0_C 21 LSIKDLHVSVE--DKA----ILRGLSLDVHPGEVHAIMGPNGSGKST--LSATLA 67 (267)
T ss_dssp EEEEEEEEEET--TEE----EEEEEEEEECTTCEEEEECCTTSSHHH--HHHHHH
T ss_pred EEEEeEEEEEC--CEE----EEEeeEEEEcCCCEEEEECCCCCCHHH--HHHHHh
Confidence 56667766663 111 111222224578899999999999998 555554
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=21.47 E-value=27 Score=33.74 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=28.9
Q ss_pred eeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 4 YKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 4 ~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+.+.++.+.|+- + ...+.|-=.+..|+...+-+|.|+|||- |+-+|
T Consensus 5 l~~~~l~~~y~~--~----~~l~~vsl~i~~Ge~~~iiG~nGsGKST--Ll~~l 50 (224)
T 2pcj_A 5 LRAENIKKVIRG--Y----EILKGISLSVKKGEFVSIIGASGSGKST--LLYIL 50 (224)
T ss_dssp EEEEEEEEEETT--E----EEEEEEEEEEETTCEEEEEECTTSCHHH--HHHHH
T ss_pred EEEEeEEEEECC--E----eeEeeeEEEEcCCCEEEEECCCCCCHHH--HHHHH
Confidence 567777776641 1 1112222234578889999999999997 54545
No 425
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.43 E-value=64 Score=40.99 Aligned_cols=29 Identities=24% Similarity=0.130 Sum_probs=21.2
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLAWR 60 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~~~ 60 (758)
+..+...++.+|+|||||.-.+.-+...+
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~ 59 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 59 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45568899999999999995554444333
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=21.35 E-value=56 Score=30.58 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.3
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
|..+.+-+|.|+|||- |+..|+
T Consensus 1 G~~i~i~G~nG~GKTT--ll~~l~ 22 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTT--LIHKAS 22 (189)
T ss_dssp CCCEEEESCCSSCHHH--HHHHHH
T ss_pred CCEEEEECCCCChHHH--HHHHHH
Confidence 4567888999999997 444444
No 427
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=21.33 E-value=26 Score=34.33 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=19.4
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal 57 (758)
+..|+.+.+-+|.|+|||- |+-+|
T Consensus 25 i~~Ge~~~i~G~nGsGKST--Ll~~l 48 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKST--IFSLL 48 (243)
T ss_dssp ECTTEEEEEECCTTSSHHH--HHHHH
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHH
Confidence 4577889999999999998 55555
No 428
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=21.29 E-value=42 Score=33.01 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCeeeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHHH
Q 004379 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 1 ~~~~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
|+-+.+.++.+.|+= . ...+.|-=.+..|+...+-+|.|+|||- |+-+|+
T Consensus 1 M~~l~~~~l~~~y~~--~----~vl~~vsl~i~~Ge~~~l~G~nGsGKST--Llk~l~ 50 (250)
T 2d2e_A 1 MSQLEIRDLWASIDG--E----TILKGVNLVVPKGEVHALMGPNGAGKST--LGKILA 50 (250)
T ss_dssp -CEEEEEEEEEEETT--E----EEEEEEEEEEETTCEEEEECSTTSSHHH--HHHHHH
T ss_pred CceEEEEeEEEEECC--E----EEEeceEEEEcCCCEEEEECCCCCCHHH--HHHHHh
Confidence 555677777777641 1 0111222224578899999999999998 555554
No 429
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=21.14 E-value=82 Score=31.89 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=17.3
Q ss_pred hcCCceEEeccCCCchHHHHHHHHHH
Q 004379 33 QNKCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 33 ~~~~~~liEAPTGTGKTlayL~pal~ 58 (758)
..+..+.|-+|.|+|||- |+-.|+
T Consensus 78 ~~g~iigI~G~~GsGKST--l~~~L~ 101 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKST--TARVLQ 101 (308)
T ss_dssp CCCEEEEEEECTTSSHHH--HHHHHH
T ss_pred CCCEEEEEECCCCCCHHH--HHHHHH
Confidence 445678899999999987 444443
No 430
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=21.08 E-value=76 Score=33.12 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=16.5
Q ss_pred CCceEEeccCCCchHHHHHHHHHH
Q 004379 35 KCNALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 35 ~~~~liEAPTGTGKTlayL~pal~ 58 (758)
+..+.+-+|+|+|||- |+..|+
T Consensus 157 g~vi~lvG~nGsGKTT--ll~~La 178 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTT--SLGKLA 178 (359)
T ss_dssp SEEEEEECCTTSCHHH--HHHHHH
T ss_pred CeEEEEEcCCCChHHH--HHHHHH
Confidence 4567899999999998 444454
No 431
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=21.02 E-value=60 Score=41.92 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.2
Q ss_pred HhcCCceEEeccCCCchHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLL 53 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL 53 (758)
+..++++++-+|+|||||.-.+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ 1445 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTL 1445 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHH
Confidence 4467889999999999999444
No 432
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=20.81 E-value=57 Score=29.59 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=15.3
Q ss_pred ceEEeccCCCchHHHHHHHHHH
Q 004379 37 NALLESPTGTGKTLCLLCATLA 58 (758)
Q Consensus 37 ~~liEAPTGTGKTlayL~pal~ 58 (758)
++++-+|.|+|||- +.-+|+
T Consensus 6 ~i~i~G~~GsGKsT--la~~La 25 (175)
T 1via_A 6 NIVFIGFMGSGKST--LARALA 25 (175)
T ss_dssp CEEEECCTTSCHHH--HHHHHH
T ss_pred EEEEEcCCCCCHHH--HHHHHH
Confidence 68899999999987 444443
No 433
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=20.77 E-value=59 Score=29.71 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.1
Q ss_pred CceEEeccCCCchHH
Q 004379 36 CNALLESPTGTGKTL 50 (758)
Q Consensus 36 ~~~liEAPTGTGKTl 50 (758)
..+++-+|.|+|||-
T Consensus 3 ~~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 3 PKAVLVGLPGSGKST 17 (184)
T ss_dssp CSEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 457899999999997
No 434
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=20.48 E-value=51 Score=35.28 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=22.7
Q ss_pred HhcCCceEEeccCCCchHHHHHHHHHHHHH
Q 004379 32 LQNKCNALLESPTGTGKTLCLLCATLAWRK 61 (758)
Q Consensus 32 l~~~~~~liEAPTGTGKTlayL~pal~~~~ 61 (758)
+..++..+|-+|+|+|||- |+-|+.|+.
T Consensus 23 ~~~~~~~~i~G~nG~GKst--ll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSN--MMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHH--HHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHH--HHHHHHhhh
Confidence 3456889999999999998 666787765
No 435
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=20.40 E-value=47 Score=32.31 Aligned_cols=27 Identities=15% Similarity=0.020 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCceEEeccCCCchHH
Q 004379 24 YMEKVIQSLQNKCNALLESPTGTGKTL 50 (758)
Q Consensus 24 ~~~~i~~al~~~~~~liEAPTGTGKTl 50 (758)
....|-=.+..+..+.|-+|.|+|||-
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKST 40 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKST 40 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHH
Confidence 445555556677788899999999987
No 436
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=20.35 E-value=1.2e+02 Score=33.36 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=23.6
Q ss_pred HHHHHHH-HHhcCCceEEeccCCCchHHHHHH
Q 004379 24 YMEKVIQ-SLQNKCNALLESPTGTGKTLCLLC 54 (758)
Q Consensus 24 ~~~~i~~-al~~~~~~liEAPTGTGKTlayL~ 54 (758)
..+.|.- .+..|...++.+|.|+|||.-..+
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHH
Confidence 3455555 567789999999999999985443
No 437
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.33 E-value=32 Score=34.10 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCeeeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 1 MPTYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 1 ~~~~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
|+.+.+.++.+.|+= + ...+.|-=.+..|+...+-+|.|+|||- |+-+|
T Consensus 13 ~~~l~i~~l~~~y~~--~----~vl~~vsl~i~~Gei~~l~G~NGsGKST--Llk~l 61 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--K----EILKGISFEIEEGEIFGLIGPNGAGKTT--TLRII 61 (256)
T ss_dssp -CCEEEEEEEEEETT--E----EEEEEEEEEECTTCEEEEECCTTSSHHH--HHHHH
T ss_pred CCeEEEEEEEEEECC--E----EEEEeeEEEEcCCcEEEEECCCCCCHHH--HHHHH
Confidence 677788888887741 1 1112222224578889999999999998 55555
No 438
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=20.11 E-value=32 Score=34.05 Aligned_cols=47 Identities=21% Similarity=0.296 Sum_probs=29.7
Q ss_pred eeeEcCeeecCCCCCCHHHHHHHHHHHHHHhcCCceEEeccCCCchHHHHHHHHH
Q 004379 3 TYKIRGIDVEFPFEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATL 57 (758)
Q Consensus 3 ~~~i~~i~~~Fpf~~r~~Q~~~~~~i~~al~~~~~~liEAPTGTGKTlayL~pal 57 (758)
-+.+.++.+.|+= . ...+.|-=.+..|+...+-+|.|+|||- |+-+|
T Consensus 7 ~l~i~~l~~~y~~--~----~vl~~vsl~i~~Ge~~~liG~nGsGKST--Llk~l 53 (257)
T 1g6h_A 7 ILRTENIVKYFGE--F----KALDGVSISVNKGDVTLIIGPNGSGKST--LINVI 53 (257)
T ss_dssp EEEEEEEEEEETT--E----EEEEEECCEEETTCEEEEECSTTSSHHH--HHHHH
T ss_pred EEEEeeeEEEECC--E----eeEeeeEEEEeCCCEEEEECCCCCCHHH--HHHHH
Confidence 3567777776641 1 1122222234578889999999999998 55555
No 439
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=20.10 E-value=55 Score=36.49 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=19.9
Q ss_pred HHHHHHHHHh----cCCceEEeccCCCchHH
Q 004379 24 YMEKVIQSLQ----NKCNALLESPTGTGKTL 50 (758)
Q Consensus 24 ~~~~i~~al~----~~~~~liEAPTGTGKTl 50 (758)
.++.+.+.+. +.+.++|.+|.|+|||-
T Consensus 132 ~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTt 162 (591)
T 1z6t_A 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSV 162 (591)
T ss_dssp HHHHHHHHHTTSTTSCEEEEEECCTTSSHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEcCCCCCHHH
Confidence 3445566664 23678999999999998
Done!