BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004380
(758 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 510 IIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS 569
+ D+SP W+Y VKVLITG + QEA N +SC+F +I VPA ++ GVLRC+ +
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPW----QEASN-NYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 570 QKVGRVPFYVTCSNRLSCSEVREFEYRA 597
G V V +N++ + V FEY++
Sbjct: 64 HDTGLVTLQVAFNNQIISNSVV-FEYKS 90
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
G LH AAA GY L+ A ++N +D +GWT LH AA+ G+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 736 GVNINFRDVNGWTALHWAAYCG 757
G NIN D GW LH AA CG
Sbjct: 96 GANINQPDNEGWIPLHAAASCG 117
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
DH G+ LH AAA+G+ +E G ++N D NG T LH AA G
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
+D G LH AA+LG+ +E G ++N +D G T L+ AAY G
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWG 112
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
D G LH AA +G+ +E G ++N RD +GWT LH AA
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY 755
G P ++D G +H AA G+ + G +++ D NG T L WAAY
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
E G P D G+ LH+AA G+ ++ G + N +D +G T LH+AA G
Sbjct: 25 ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 81
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
G P D G+ LH+AA G+ ++ G + N +D +G T LH+AA G
Sbjct: 60 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENG 114
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYC 756
G LH A G+ ++ GVN+N D +GWT LH AA C
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYC 756
G LH A G+ ++ GVN+N D +GWT LH AA C
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC 113
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
D G LH AA+ G D ++ V G ++N + NG T LH+AA
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
LH+A + G+ +E GV +N +D GW+ LH AA G
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
D G LH AA+ G D ++ V G ++N + NG T LH+AA
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
LH+A + G+ +E GV +N +D GW+ LH AA GR
Sbjct: 44 LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR 85
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
D + LH+A + G+ +E GV +N +D GW+ LH AA GR
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR 85
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
D G LH AA+ G D ++ G +N + NG T LH+AA R
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 118
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
D + LH+A + G+ +E GV +N +D GW+ LH AA GR
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGR 86
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
D G LH AA+ G D ++ G +N + NG T LH+AA R
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR 119
>pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0,
3) Ternary Complex
pdb|3K5M|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Ddgtp Lt(-2,
2) Ternary Complex
pdb|3K5N|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5N|B Chain B, Crystal Structure Of E.Coli Pol Ii-Abasic Dna Binary
Complex
pdb|3K5O|A Chain A, Crystal Structure Of E.Coli Pol Ii
pdb|3K5O|B Chain B, Crystal Structure Of E.Coli Pol Ii
pdb|3K57|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Datp Ternary
Complex
pdb|3K58|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dttp Ternary
Complex
pdb|3K59|A Chain A, Crystal Structure Of E.Coli Pol Ii-Normal Dna-Dctp Ternary
Complex
pdb|3MAQ|A Chain A, Crystal Structure Of E.coli Pol Ii-normal Dna-dgtp Ternary
Complex
Length = 786
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 387 PPHAHPNMENDVHEQLPNAEHGHLLKSDP---ESSLTIDGKSFYSSAIKQHLID--GSTE 441
PPHA P G+++ S P +S L +D KS Y S I+ LID G E
Sbjct: 398 PPHASPG--------------GYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVE 443
Query: 442 GLKKLDS-------FNRWMSKE 456
G+ + D + W S+E
Sbjct: 444 GMAQPDPEHSTEGFLDAWFSRE 465
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D+ G LH AA G+ +E G +++ DV G+T LH AAY G
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWG 91
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D+ G LH AA G+ +E G ++N +D G+T LH AAY G
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDG 124
>pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii
Length = 783
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 26/82 (31%)
Query: 387 PPHAHPNMENDVHEQLPNAEHGHLLKSDP---ESSLTIDGKSFYSSAIKQHLID--GSTE 441
PPHA P G+++ S P +S L +D KS Y S ++ LID G E
Sbjct: 395 PPHASPG--------------GYVMDSRPGLYDSVLVLDYKSLYPSIVRTFLIDPVGLVE 440
Query: 442 GLKKLDS-------FNRWMSKE 456
G+ + D + W S+E
Sbjct: 441 GMAQPDPEHSTEGFLDAWFSRE 462
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.5 bits (75), Expect = 0.50, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 25/49 (51%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
+D G LH AA G+ +E G ++N RD+ G T LH AA G
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG 91
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 720 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
AA G D + G ++N RD GWT LH AA+ G
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFG 58
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N D +G+T LH AA G
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRG 124
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%)
Query: 703 GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
G P D G+ LH AA G+ ++ G + N +D +G T LH AA G
Sbjct: 60 GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENG 114
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
E G D G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
E G D G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 56 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
E G D G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
G+ LH AA G+ ++ AG ++N +D NG T LH AA G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 46
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.1 bits (74), Expect = 0.57, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 720 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
AA G D + G ++N DV GWT LH AAY G
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWG 58
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N +D NG T LH AA G
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRG 124
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 33.1 bits (74), Expect = 0.67, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
D G LH AA G+ +E G ++N D GWT LH AA G+
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQ 117
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 23/48 (47%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AAA G +E G ++N D G T LH AAY G
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDG 83
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E AG ++N +D +G+T LH AA G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E AG ++N +D +G+T LH AA G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E AG ++N +D +G+T LH AA G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E AG ++N +D +G+T LH AA G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 112
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 711 HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
H G L AA L + +E A +IN D +G TALHWAA
Sbjct: 116 HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAA 159
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E AG ++N +D +G+T LH AA G
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Score = 32.7 bits (73), Expect = 0.83, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E AG ++N +D +G+T LH AA G
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 124
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
GQ LH AA LG +E AG + + G TALH A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%)
Query: 713 GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
GQ LH AA LG +E AG + + G TALH A
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA 85
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N D NG+T LH AA G
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIG 124
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 720 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
AA G D + G ++N D GWT LH AAY G
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFG 58
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754
DH G LH AA G+ +E G ++N D G T LH AA
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA 88
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 720 AAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
AA G D + G ++N D +GWT LH AA+ G
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG 58
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
+D+ G LH AA G+ +E G +++ DV G+T LH AA G
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 701 EGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
E G D G+ LH+AA G+ ++ G ++N +D +G T LH+AA G
Sbjct: 25 ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 81
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G+ LH+AA G+ ++ G ++N +D +G T LH+AA G
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEG 114
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N D G+T LH AA G
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAG 124
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWA 753
LH AA+ G+ +E G ++N +D+ TALHWA
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWA 107
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N D+ G T LH AA G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 735 AGVNINFRDVNGWTALHWAAYC 756
AG N+N D +GWT LH AA C
Sbjct: 76 AGANVNSPDSHGWTPLHCAASC 97
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
+D G LH AA G+ +E G ++N D+ G T LH AA G
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG 91
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
LD G LH AA LG+ +E G ++N D G T LH AA G
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRG 91
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.4 bits (67), Expect = 4.1, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D+ G LH AA+ G+ +E G ++N D+ G T LH AA G
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATG 91
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AAA G+ +E G ++N D +G T LH AA G
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYG 124
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N D+ G T LH AA G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 709 LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
LD G LH AA G+ +E G ++N D G T LH AA G
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTG 124
Score = 28.9 bits (63), Expect = 9.9, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA +G+ +E G ++N D +G T LH AA G
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758
+H G+ +LH A+ G ++E G + N +D GWT LH A G
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH 55
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
D G LH AA G+ +E G ++N D G+T LH AA G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDG 124
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 717 LHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757
LH G+ +E ++N D +GWT LH AAY G
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 29.3 bits (64), Expect = 8.7, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 710 DHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY 755
D+ G LH AA LG+ +E G ++N G T LH AA+
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
>pdb|1KMP|A Chain A, Crystal Structure Of The Outer Membrane Transporter Feca
Complexed With Ferric Citrate
Length = 774
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 464 NMQSSSGAYWETVESENGVDDSGVSPQARLDTYMMSPSLSQDQLYSIIDFSPNWAYVSSE 523
N Q S +TV + +G+ QAR D ++P+L +Y+ ++AYV++E
Sbjct: 596 NNQYDSNQTNDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYA------SYAYVNAE 649
Query: 524 VK 525
++
Sbjct: 650 IR 651
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,693,652
Number of Sequences: 62578
Number of extensions: 1019998
Number of successful extensions: 2265
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 115
length of query: 758
length of database: 14,973,337
effective HSP length: 106
effective length of query: 652
effective length of database: 8,340,069
effective search space: 5437724988
effective search space used: 5437724988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)