Query 004380
Match_columns 758
No_of_seqs 390 out of 2353
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 23:23:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cxk_A Camta1, calmodulin bind 99.9 5.5E-26 1.9E-30 203.9 8.1 88 507-600 6-93 (95)
2 1n0q_A 3ANK, 3 ankyrin repeats 99.4 8.9E-13 3E-17 113.5 10.0 64 695-758 17-80 (93)
3 4gpm_A Engineered protein OR26 99.3 3.4E-12 1.1E-16 123.8 9.4 65 694-758 84-148 (169)
4 2zgd_A 3 repeat synthetic anky 99.3 6.9E-12 2.4E-16 111.8 10.2 75 683-758 28-102 (110)
5 3aaa_C Myotrophin, protein V-1 99.3 7.5E-12 2.6E-16 112.7 9.6 61 695-755 55-115 (123)
6 4gpm_A Engineered protein OR26 99.2 1.8E-11 6.1E-16 118.7 10.1 75 683-758 41-115 (169)
7 2jab_A H10-2-G3; HER2, darpin, 99.2 3E-11 1E-15 110.8 10.4 75 683-758 51-125 (136)
8 3c5r_A BARD-1, BRCA1-associate 99.2 4.2E-11 1.4E-15 109.5 9.0 59 696-754 59-117 (137)
9 2jab_A H10-2-G3; HER2, darpin, 99.2 4.8E-11 1.6E-15 109.4 9.2 76 682-758 17-92 (136)
10 1ycs_B 53BP2, P53BP2; ankyrin 99.2 3.5E-11 1.2E-15 121.2 8.6 64 695-758 52-115 (239)
11 3muj_A Transcription factor CO 99.2 4.3E-11 1.5E-15 112.5 8.3 87 508-601 6-94 (138)
12 1dcq_A PYK2-associated protein 99.2 5.7E-11 1.9E-15 123.8 9.4 66 693-758 185-250 (278)
13 1bd8_A P19INK4D CDK4/6 inhibit 99.2 5.4E-11 1.9E-15 110.5 8.3 74 683-758 72-145 (156)
14 2l6b_A NR1C; ankyrin, consensu 99.1 3.2E-11 1.1E-15 107.0 6.2 64 695-758 24-87 (115)
15 3lvq_E ARF-GAP with SH3 domain 99.1 1.1E-10 3.9E-15 130.8 12.0 66 693-758 187-252 (497)
16 1d9s_A Cyclin-dependent kinase 99.1 5.1E-11 1.7E-15 109.3 7.3 64 695-758 59-123 (136)
17 1yyh_A HN1;, notch 1, ankyrin 99.1 3.9E-11 1.3E-15 121.2 7.1 75 683-758 161-235 (253)
18 3twr_A Tankyrase-2; ankyrin re 99.1 1E-10 3.5E-15 109.8 9.5 64 695-758 57-120 (165)
19 1bi7_B P16INK4A, MTS1, multipl 99.1 6.4E-11 2.2E-15 111.1 7.9 64 695-758 59-123 (156)
20 1awc_B Protein (GA binding pro 99.1 1.2E-10 4.2E-15 108.4 9.8 75 683-758 71-145 (153)
21 3ehr_A Osteoclast-stimulating 99.1 1.2E-10 4E-15 115.2 9.6 60 696-755 122-182 (222)
22 3deo_A Signal recognition part 99.1 1.2E-10 4.1E-15 112.3 9.3 74 683-757 80-154 (183)
23 1awc_B Protein (GA binding pro 99.1 1.7E-10 5.7E-15 107.5 9.9 65 694-758 48-112 (153)
24 1d9s_A Cyclin-dependent kinase 99.1 3.2E-11 1.1E-15 110.6 4.9 63 695-758 27-90 (136)
25 4b93_B Ankyrin repeat domain-c 99.1 1.4E-10 4.7E-15 120.0 10.1 63 695-757 167-229 (269)
26 2vge_A RELA-associated inhibit 99.1 1.1E-10 3.7E-15 117.8 9.0 58 696-753 70-128 (229)
27 3f6q_A Integrin-linked protein 99.1 1.5E-10 5.1E-15 110.6 9.5 64 695-758 54-117 (179)
28 1dcq_A PYK2-associated protein 99.1 3.1E-10 1.1E-14 118.2 11.8 75 683-758 134-217 (278)
29 1ihb_A P18-INK4C(INK6), cyclin 99.1 1.4E-10 4.9E-15 108.1 8.3 75 683-758 74-149 (162)
30 3aaa_C Myotrophin, protein V-1 99.1 6.4E-11 2.2E-15 106.5 5.7 76 682-758 10-85 (123)
31 4b93_B Ankyrin repeat domain-c 99.1 3.5E-11 1.2E-15 124.5 4.2 65 694-758 133-197 (269)
32 1n0r_A 4ANK, 4 ankyrin repeats 99.1 3.7E-10 1.3E-14 100.0 10.0 64 695-758 50-113 (126)
33 3v30_A DNA-binding protein rfx 99.1 2.2E-10 7.5E-15 108.3 8.7 75 683-758 73-147 (172)
34 2y1l_E Darpin-8.4; hydrolase-i 99.1 3.6E-10 1.2E-14 107.2 10.1 76 682-758 50-125 (169)
35 3v30_A DNA-binding protein rfx 99.1 2.2E-10 7.5E-15 108.3 8.5 65 694-758 50-114 (172)
36 1ihb_A P18-INK4C(INK6), cyclin 99.1 3.6E-10 1.2E-14 105.4 9.6 65 694-758 51-115 (162)
37 3deo_A Signal recognition part 99.1 2E-10 6.7E-15 110.8 8.0 74 683-758 48-122 (183)
38 3t8k_A Uncharacterized protein 99.1 8E-11 2.7E-15 115.7 5.3 62 695-756 57-125 (186)
39 2y1l_E Darpin-8.4; hydrolase-i 99.1 2.6E-10 9.1E-15 108.1 8.7 75 683-758 84-158 (169)
40 1sw6_A Regulatory protein SWI6 99.1 1.2E-10 4.2E-15 123.1 6.8 67 692-758 109-176 (327)
41 2rfm_A Putative ankyrin repeat 99.1 4.1E-10 1.4E-14 108.5 9.9 64 695-758 116-179 (192)
42 4hbd_A KN motif and ankyrin re 99.1 2.3E-10 7.9E-15 118.1 8.5 65 694-758 197-262 (276)
43 1s70_B 130 kDa myosin-binding 99.1 2.9E-10 9.8E-15 116.3 9.1 64 695-758 55-118 (299)
44 3jxi_A Vanilloid receptor-rela 99.0 3.5E-10 1.2E-14 113.8 9.5 65 694-758 107-188 (260)
45 3v31_A Ankyrin repeat family A 99.0 3.8E-10 1.3E-14 106.2 9.1 75 683-758 73-147 (167)
46 1n0r_A 4ANK, 4 ankyrin repeats 99.0 4.8E-10 1.6E-14 99.3 9.1 64 695-758 17-80 (126)
47 3ui2_A Signal recognition part 99.0 3E-10 1E-14 115.1 8.9 74 683-757 81-155 (244)
48 2rfm_A Putative ankyrin repeat 99.0 3.4E-10 1.2E-14 109.1 8.6 75 683-758 72-146 (192)
49 2b0o_E UPLC1; arfgap, structur 99.0 2.8E-10 9.6E-15 120.0 8.6 66 693-758 206-271 (301)
50 1bd8_A P19INK4D CDK4/6 inhibit 99.0 4.7E-10 1.6E-14 104.2 9.1 65 694-758 49-113 (156)
51 1oy3_D Transcription factor in 99.0 3.2E-10 1.1E-14 114.2 8.4 64 695-758 173-237 (282)
52 3v31_A Ankyrin repeat family A 99.0 5E-10 1.7E-14 105.4 9.1 65 694-758 50-114 (167)
53 1bi7_B P16INK4A, MTS1, multipl 99.0 1.7E-10 5.7E-15 108.2 5.8 63 695-758 27-90 (156)
54 3f6q_A Integrin-linked protein 99.0 6.3E-10 2.1E-14 106.3 9.7 72 686-758 12-84 (179)
55 2pnn_A Transient receptor pote 99.0 5.4E-10 1.8E-14 113.7 9.3 65 694-758 115-196 (273)
56 2rfa_A Transient receptor pote 99.0 5.6E-10 1.9E-14 110.2 9.1 65 694-758 89-166 (232)
57 3lvq_E ARF-GAP with SH3 domain 99.0 2.3E-10 8E-15 128.3 7.1 51 708-758 166-219 (497)
58 2etb_A Transient receptor pote 99.0 7.4E-10 2.5E-14 111.4 9.5 63 694-756 104-182 (256)
59 3ui2_A Signal recognition part 99.0 7.1E-10 2.4E-14 112.4 9.2 74 683-758 49-123 (244)
60 2xai_A ASB-9, ankyrin repeat a 99.0 9.1E-10 3.1E-14 111.9 9.8 62 695-757 51-112 (261)
61 3hra_A Ankyrin repeat family p 99.0 8.3E-10 2.9E-14 106.3 9.0 75 683-758 43-118 (201)
62 2dzn_A Probable 26S proteasome 99.0 9.4E-10 3.2E-14 107.8 9.4 64 695-758 122-186 (228)
63 3c5r_A BARD-1, BRCA1-associate 99.0 1.4E-10 4.9E-15 106.0 3.2 64 695-758 25-88 (137)
64 3twr_A Tankyrase-2; ankyrin re 99.0 9.7E-10 3.3E-14 103.2 8.9 76 682-758 11-87 (165)
65 3utm_A Tankyrase-1; tankyrase, 99.0 1E-09 3.4E-14 113.7 9.5 76 682-758 61-136 (351)
66 1yyh_A HN1;, notch 1, ankyrin 99.0 9.2E-10 3.1E-14 111.1 8.9 64 695-758 139-202 (253)
67 2f8y_A Notch homolog 1, transl 99.0 1.5E-09 5.2E-14 106.2 10.0 75 683-758 129-203 (223)
68 1oy3_D Transcription factor in 99.0 5.6E-10 1.9E-14 112.5 6.6 64 695-758 24-90 (282)
69 3jxi_A Vanilloid receptor-rela 98.9 7.3E-10 2.5E-14 111.5 6.6 65 694-758 154-237 (260)
70 1k1a_A B-cell lymphoma 3-encod 98.9 2.3E-09 7.7E-14 105.8 9.9 63 695-757 165-227 (241)
71 3hra_A Ankyrin repeat family p 98.9 1.5E-09 5.1E-14 104.5 8.4 64 695-758 121-190 (201)
72 3ehr_A Osteoclast-stimulating 98.9 4.6E-10 1.6E-14 110.9 4.9 64 695-758 88-152 (222)
73 2rfa_A Transient receptor pote 98.9 1.9E-09 6.5E-14 106.3 9.3 65 694-758 135-209 (232)
74 1ikn_D Protein (I-kappa-B-alph 98.9 5.6E-10 1.9E-14 110.9 5.5 65 694-758 131-196 (236)
75 3jue_A Arfgap with coiled-coil 98.9 1.5E-09 5.2E-14 118.3 9.3 65 694-758 249-313 (368)
76 3utm_A Tankyrase-1; tankyrase, 98.9 1.9E-09 6.5E-14 111.6 9.5 73 686-758 31-103 (351)
77 2etb_A Transient receptor pote 98.9 8.6E-10 2.9E-14 110.9 6.7 65 694-758 150-233 (256)
78 4g8k_A 2-5A-dependent ribonucl 98.9 1.2E-09 4E-14 114.6 8.0 57 697-758 256-313 (337)
79 4hbd_A KN motif and ankyrin re 98.9 1.1E-09 3.7E-14 113.1 7.6 65 694-758 164-228 (276)
80 2f8y_A Notch homolog 1, transl 98.9 2.2E-09 7.6E-14 105.0 9.4 65 694-758 106-170 (223)
81 1n0q_A 3ANK, 3 ankyrin repeats 98.9 9.6E-10 3.3E-14 94.3 5.7 47 712-758 1-47 (93)
82 3b7b_A Euchromatic histone-lys 98.9 1.2E-09 4.2E-14 107.9 7.2 65 694-758 158-222 (237)
83 3t8k_A Uncharacterized protein 98.9 2.7E-10 9.2E-15 111.9 2.4 64 695-758 96-166 (186)
84 3d9h_A CDNA FLJ77766, highly s 98.9 2E-09 6.8E-14 111.3 9.0 62 695-757 107-168 (285)
85 3ljn_A Hypothetical protein; a 98.9 1.2E-09 4.1E-14 115.8 7.2 66 693-758 186-256 (364)
86 3aji_A 26S proteasome non-ATPa 98.9 2.8E-09 9.6E-14 104.8 9.3 74 683-757 143-216 (231)
87 3aji_A 26S proteasome non-ATPa 98.9 3.9E-09 1.3E-13 103.8 9.8 75 683-758 77-151 (231)
88 2pnn_A Transient receptor pote 98.9 1.3E-09 4.6E-14 110.8 6.6 65 694-758 162-245 (273)
89 2dzn_A Probable 26S proteasome 98.9 3.8E-09 1.3E-13 103.4 9.6 65 694-758 86-152 (228)
90 3jue_A Arfgap with coiled-coil 98.9 2E-09 6.8E-14 117.4 8.1 76 682-758 202-280 (368)
91 2b0o_E UPLC1; arfgap, structur 98.9 2.4E-09 8.2E-14 112.9 8.4 75 683-758 155-238 (301)
92 3b7b_A Euchromatic histone-lys 98.9 3.9E-09 1.3E-13 104.3 9.3 65 694-758 125-189 (237)
93 1wdy_A 2-5A-dependent ribonucl 98.9 3.4E-09 1.2E-13 106.2 9.0 66 693-758 199-265 (285)
94 1wdy_A 2-5A-dependent ribonucl 98.9 5.7E-09 1.9E-13 104.6 10.4 76 682-758 42-117 (285)
95 1k1a_A B-cell lymphoma 3-encod 98.9 4.9E-09 1.7E-13 103.3 9.7 64 695-758 61-128 (241)
96 1ycs_B 53BP2, P53BP2; ankyrin 98.9 2.6E-09 8.9E-14 107.4 7.3 65 694-758 84-151 (239)
97 3kea_A K1L; tropism, ANK repea 98.9 1.4E-09 4.7E-14 112.7 5.2 64 695-758 77-141 (285)
98 2vge_A RELA-associated inhibit 98.8 1.2E-09 4E-14 110.3 4.4 76 682-758 24-99 (229)
99 2fo1_E LIN-12 protein; beta-ba 98.8 4.6E-09 1.6E-13 112.8 8.8 64 695-758 294-358 (373)
100 3ljn_A Hypothetical protein; a 98.8 2.9E-09 1E-13 112.7 7.0 66 693-758 153-223 (364)
101 3mlp_A Transcription factor CO 98.8 5.7E-09 2E-13 110.6 9.0 89 507-602 231-321 (402)
102 1n11_A Ankyrin; clathrin, BAND 98.8 5.9E-09 2E-13 113.0 9.5 75 683-758 51-125 (437)
103 1n11_A Ankyrin; clathrin, BAND 98.8 5.1E-09 1.7E-13 113.5 8.9 64 695-758 326-389 (437)
104 1ikn_D Protein (I-kappa-B-alph 98.8 8.1E-09 2.8E-13 102.5 9.2 64 695-758 93-163 (236)
105 2xai_A ASB-9, ankyrin repeat a 98.8 6.3E-09 2.2E-13 105.6 8.4 62 695-757 149-210 (261)
106 3kea_A K1L; tropism, ANK repea 98.8 4.2E-09 1.4E-13 109.0 6.8 74 683-758 99-173 (285)
107 1s70_B 130 kDa myosin-binding 98.8 3.2E-09 1.1E-13 108.6 5.8 74 683-757 77-150 (299)
108 3eu9_A Huntingtin-interacting 98.8 5.4E-09 1.9E-13 102.3 7.0 64 695-758 158-222 (240)
109 1sw6_A Regulatory protein SWI6 98.8 1.6E-09 5.5E-14 114.5 3.3 59 697-757 269-327 (327)
110 2fo1_E LIN-12 protein; beta-ba 98.8 8.8E-09 3E-13 110.6 9.0 63 695-757 181-246 (373)
111 4g8k_A 2-5A-dependent ribonucl 98.8 1.3E-08 4.5E-13 106.5 9.7 76 682-758 28-137 (337)
112 3d9h_A CDNA FLJ77766, highly s 98.8 1.6E-08 5.4E-13 104.5 9.3 60 695-755 205-264 (285)
113 3eu9_A Huntingtin-interacting 98.7 3.2E-08 1.1E-12 96.8 9.9 64 695-758 124-189 (240)
114 2zgd_A 3 repeat synthetic anky 98.7 8.2E-09 2.8E-13 91.7 4.7 53 706-758 17-69 (110)
115 2l6b_A NR1C; ankyrin, consensu 98.7 9.1E-09 3.1E-13 91.1 4.6 51 708-758 4-54 (115)
116 2aja_A Ankyrin repeat family p 98.3 8.3E-08 2.8E-12 104.9 1.3 65 693-758 141-211 (376)
117 1uad_C RSEC5, exocyst complex 98.2 5.2E-06 1.8E-10 74.6 8.5 84 507-598 7-95 (99)
118 2aja_A Ankyrin repeat family p 98.1 1.5E-06 5.1E-11 94.9 4.4 74 683-758 96-175 (376)
119 3tc9_A Hypothetical hydrolase; 97.9 2.1E-05 7.3E-10 86.8 9.3 87 504-597 14-105 (430)
120 3hrp_A Uncharacterized protein 97.7 6E-05 2.1E-09 82.4 8.9 87 504-597 14-104 (409)
121 3kya_A Putative phosphatase; s 97.7 4.6E-05 1.6E-09 86.4 8.1 87 504-597 14-103 (496)
122 2uzx_B Hepatocyte growth facto 97.6 3.8E-05 1.3E-09 90.8 6.3 92 507-598 541-636 (727)
123 2uzx_B Hepatocyte growth facto 97.5 1.6E-05 5.4E-10 94.1 0.0 74 507-585 635-709 (727)
124 4hw6_A Hypothetical protein, I 97.4 0.00034 1.2E-08 77.4 9.5 88 504-597 16-107 (433)
125 2yrp_A Nuclear factor of activ 97.1 0.001 3.5E-08 61.2 7.9 86 504-597 5-108 (114)
126 1ikn_C P50D, protein (NF-kappa 95.0 0.027 9.1E-07 52.3 5.4 84 508-598 4-106 (119)
127 1my7_A NF-kappab P65 (RELA) su 94.6 0.041 1.4E-06 50.6 5.5 89 508-598 4-101 (114)
128 1u36_A DNA-binding, nuclear fa 94.3 0.063 2.1E-06 48.8 6.0 83 508-597 4-105 (106)
129 1zk9_A Transcription factor RE 93.3 0.033 1.1E-06 50.9 2.3 88 508-597 13-109 (110)
130 1oy3_C Transcription factor P6 92.8 0.16 5.3E-06 48.1 6.1 89 508-598 4-101 (136)
131 3iag_C Recombining binding pro 91.7 0.29 9.8E-06 53.7 7.3 67 524-597 343-420 (422)
132 2v2t_A RELB, transcription fac 90.2 0.33 1.1E-05 51.3 5.8 85 506-597 189-287 (288)
133 3orj_A Sugar-binding protein; 89.3 0.53 1.8E-05 52.0 6.8 79 506-598 112-197 (439)
134 1p7h_L Nuclear factor of activ 88.5 0.4 1.4E-05 50.6 5.1 88 506-597 184-285 (286)
135 1nfk_A Protein (nuclear factor 88.1 0.5 1.7E-05 50.7 5.6 85 507-598 209-312 (325)
136 1svc_P Protein (nuclear factor 88.0 0.54 1.9E-05 51.1 5.8 85 507-598 249-352 (365)
137 1a3q_A Protein (nuclear factor 87.3 0.82 2.8E-05 48.2 6.5 84 507-596 185-284 (285)
138 1imh_C NF-AT5, tonebp, nuclear 87.3 0.89 3.1E-05 47.9 6.8 88 506-597 180-280 (281)
139 1ikn_A P65, protein (NF-kappa- 87.3 0.65 2.2E-05 49.0 5.7 85 507-598 175-273 (286)
140 2o61_A Transcription factor P6 87.2 0.55 1.9E-05 53.5 5.5 85 508-598 177-274 (540)
141 1gji_A C-REL protein, C-REL pr 85.0 0.97 3.3E-05 47.4 5.6 86 506-597 177-274 (275)
142 3brd_A LIN-12 and GLP-1 phenot 74.9 5.5 0.00019 44.5 7.5 81 509-597 377-474 (477)
143 2d9z_A Protein kinase C, NU ty 55.1 6.4 0.00022 36.8 2.7 29 101-131 12-40 (129)
144 3orj_A Sugar-binding protein; 39.4 19 0.00065 39.9 3.8 69 519-597 34-111 (439)
145 3oky_A Plexin-A2; transmembran 28.6 1.2E+02 0.004 35.7 8.3 72 505-582 526-609 (681)
146 2ayd_A WRKY transcription fact 27.3 17 0.0006 31.0 0.8 9 69-77 14-22 (76)
147 1wj2_A Probable WRKY transcrip 26.2 17 0.00058 31.2 0.5 10 69-78 17-26 (78)
148 2coa_A Protein kinase C, D2 ty 23.7 59 0.002 30.2 3.6 30 100-131 11-40 (125)
149 1qho_A Alpha-amylase; glycosid 20.7 1.9E+02 0.0065 33.4 8.1 66 507-580 498-563 (686)
No 1
>2cxk_A Camta1, calmodulin binding transcription activator 1; structural genomics, TIG/IPT domain, NPPSFA; 1.85A {Homo sapiens} SCOP: b.1.18.1
Probab=99.92 E-value=5.5e-26 Score=203.89 Aligned_cols=88 Identities=36% Similarity=0.691 Sum_probs=81.9
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCCCCCcceeEEEEeCCCcc
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVTCSNRLS 586 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PPh~pG~VpLyVtcsn~~a 586 (758)
+++|+||+|+|||..|||||+|+|.||..+ ++|.||||+++||++++++|+|||++|||.||+|+|+|+|+++.
T Consensus 6 ~~~Itd~sP~~gp~sGGTkv~I~G~~L~~g-----s~~~~~fG~~~vpa~~~s~~vl~C~tPp~~~G~v~~~v~~d~~~- 79 (95)
T 2cxk_A 6 SGMVTDYSPEWSYPEGGVKVLITGPWQEAS-----NNYSCLFDQISVPASLIQPGVLRCYCPAHDTGLVTLQVAFNNQI- 79 (95)
T ss_dssp CSCCCEEECSEECTTCCCEEEEESSCCCCS-----SCEEEEETTEEEECEEEETTEEEEECCCCCSEEEEEEEEETTEE-
T ss_pred cEEEEEECCCcccCCCCEEEEEEeECCCCC-----ccEEEEECCEEEeEEEeECCEEEEEecCCCCceEeEEEEECCee-
Confidence 569999999999999999999999999876 57999999999999999999999999999999999999999887
Q ss_pred cCcceecccccCCC
Q 004380 587 CSEVREFEYRASHI 600 (758)
Q Consensus 587 cSEVreFEYr~~~~ 600 (758)
+|+.++||||..+.
T Consensus 80 ~s~~~~FeY~~~Pt 93 (95)
T 2cxk_A 80 ISNSVVFEYKSGPS 93 (95)
T ss_dssp CSCCEEEEECCC--
T ss_pred cCCceEEEEeCCCC
Confidence 59999999998653
No 2
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.40 E-value=8.9e-13 Score=113.47 Aligned_cols=64 Identities=34% Similarity=0.377 Sum_probs=61.4
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 17 ~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~ 80 (93)
T 1n0q_A 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (93)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 6678899999999999999999999999999999999999999999999999999999999885
No 3
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.31 E-value=3.4e-12 Score=123.85 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
-+++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+|+
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~ 148 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN 148 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 36778999999999999999999999999999999999999999999999999999999999886
No 4
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.30 E-value=6.9e-12 Score=111.76 Aligned_cols=75 Identities=21% Similarity=0.152 Sum_probs=65.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
|+.+++.+.. -+++.|++.|+++|.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 28 L~~A~~~g~~-~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 102 (110)
T 2zgd_A 28 LLEAARAGQD-DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102 (110)
T ss_dssp HHHHHHHTCH-HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHcCCH-HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence 3334443333 35678889999999999999999999999999999999999999999999999999999999885
No 5
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.29 E-value=7.5e-12 Score=112.69 Aligned_cols=61 Identities=15% Similarity=0.033 Sum_probs=46.3
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHH
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY 755 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~ 755 (758)
+++.|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus 55 ~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 55 ILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 5566777777777777777777777777777777777777777777777777777777753
No 6
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.24 E-value=1.8e-11 Score=118.74 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=65.9
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++.... ..+++.|++.|++++.+|..|+||||+||..|+.++|++||++|+++|.+|.+|+||||+||..|+
T Consensus 41 l~~a~~~~~-~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~ 115 (169)
T 4gpm_A 41 LHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115 (169)
T ss_dssp HHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCC
Confidence 444444333 346678899999999999999999999999999999999999999999999999999999999886
No 7
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.23 E-value=3e-11 Score=110.79 Aligned_cols=75 Identities=23% Similarity=0.166 Sum_probs=64.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
|+.++..+. .-+++.|++.|++++..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 51 L~~A~~~~~-~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~ 125 (136)
T 2jab_A 51 LYLATAHGH-LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125 (136)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCC
Confidence 444444433 336778889999999999999999999999999999999999999999999999999999998875
No 8
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.19 E-value=4.2e-11 Score=109.53 Aligned_cols=59 Identities=15% Similarity=0.016 Sum_probs=30.8
Q ss_pred HHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHH
Q 004380 696 VQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAA 754 (758)
Q Consensus 696 v~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA 754 (758)
++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 59 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp HHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred HHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 34444555555555555555555555555555555555555555555555555555554
No 9
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.18 E-value=4.8e-11 Score=109.44 Aligned_cols=76 Identities=25% Similarity=0.230 Sum_probs=65.9
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.++.+++.+.. -+++.|++.|++++..|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+||..|+
T Consensus 17 ~l~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 92 (136)
T 2jab_A 17 KLLEAARAGQD-DEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92 (136)
T ss_dssp HHHHHHHHTCH-HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHHhCCH-HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34444443333 35678899999999999999999999999999999999999999999999999999999999885
No 10
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.17 E-value=3.5e-11 Score=121.16 Aligned_cols=64 Identities=34% Similarity=0.465 Sum_probs=37.0
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|+++|..|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+||..||
T Consensus 52 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~ 115 (239)
T 1ycs_B 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN 115 (239)
T ss_dssp HHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 3445555555555555556666666665566666666655566665555556666666555553
No 11
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=99.17 E-value=4.3e-11 Score=112.47 Aligned_cols=87 Identities=22% Similarity=0.369 Sum_probs=77.5
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCC-CCCcceeEEEEeCCCcc
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-QKVGRVPFYVTCSNRLS 586 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h~pG~VpLyVtcsn~~a 586 (758)
+.|+.++|+.|+..||+.|+|+|.+|.++.+ |+||+..+=.+++....|||++|| |.||.|.|.++..++.-
T Consensus 6 P~I~~i~P~eG~~~GG~~V~I~G~nF~~Glq-------V~FG~t~~w~e~itphairv~~PP~~~pG~V~VTl~~k~kqf 78 (138)
T 3muj_A 6 PCIKAISPSEGWTTGGATVIIIGDNFFDGLQ-------VVFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQF 78 (138)
T ss_dssp CEEEEEESSEEETTCCCEEEEEEESCCTTCE-------EEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEEE
T ss_pred CceeEecCCCCCccCCeEEEEeCCCcccCCE-------EEECCeeeeeeeecccceEEECCCCCCCCceEEEEeecCccc
Confidence 5899999999999999999999999999954 999999998999999999999999 59999999999988777
Q ss_pred cCcc-eecccccCCCC
Q 004380 587 CSEV-REFEYRASHIP 601 (758)
Q Consensus 587 cSEV-reFEYr~~~~~ 601 (758)
|... ..|.|-.-..+
T Consensus 79 ~~g~p~~F~Y~~l~eP 94 (138)
T 3muj_A 79 CKGAPGRFVYTALNEP 94 (138)
T ss_dssp CTTSCEEEEEECCCSC
T ss_pred ccCCCceEEEecCCCC
Confidence 7654 78998865444
No 12
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.15 E-value=5.7e-11 Score=123.77 Aligned_cols=66 Identities=15% Similarity=0.091 Sum_probs=62.8
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.-+++.|++.|+++|.+|..|+||||+||..|+.++|++||++||+++.+|..|+||||+|+..||
T Consensus 185 ~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 250 (278)
T 1dcq_A 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH 250 (278)
T ss_dssp HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCC
Confidence 347788999999999999999999999999999999999999999999999999999999999886
No 13
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.15 E-value=5.4e-11 Score=110.50 Aligned_cols=74 Identities=22% Similarity=0.215 Sum_probs=56.4
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. ..+++.|++.|++++.+|..|+||||+||..|+.+++++|+++ ++++.+|..|+||||+|+..|+
T Consensus 72 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 72 VHDAARTGF-LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA 145 (156)
T ss_dssp HHHHHHTTC-HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred HHHHHHcCc-HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc
Confidence 444444332 2356677788888888888888888888888888888888888 8888888888888888888775
No 14
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.15 E-value=3.2e-11 Score=107.04 Aligned_cols=64 Identities=27% Similarity=0.251 Sum_probs=60.8
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 24 ~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~ 87 (115)
T 2l6b_A 24 EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGH 87 (115)
T ss_dssp HHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCC
Confidence 5678889999999999999999999999999999999999999999999999999999998875
No 15
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.15 E-value=1.1e-10 Score=130.83 Aligned_cols=66 Identities=21% Similarity=0.070 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
..+++.|++.|+++|.+|..|+||||+||..|+.++|++||++||++|.+|..|+||||+|+..||
T Consensus 187 ~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 252 (497)
T 3lvq_E 187 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 252 (497)
T ss_dssp HHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 346788899999999999999999999999999999999999999999999999999999999886
No 16
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.14 E-value=5.1e-11 Score=109.27 Aligned_cols=64 Identities=22% Similarity=0.157 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCCCccCCC-CCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHC-GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~-G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|.. |+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 59 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 123 (136)
T 1d9s_A 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH 123 (136)
T ss_dssp HHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTC
T ss_pred HHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 566788889999999999 9999999999999999999999999999999999999999999875
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.14 E-value=3.9e-11 Score=121.16 Aligned_cols=75 Identities=12% Similarity=-0.116 Sum_probs=66.0
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
|+.++..+. ..+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..||
T Consensus 161 L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 161 LHWAAAVNN-VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence 444444333 336788999999999999999999999999999999999999999999999999999999999986
No 18
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.14 E-value=1e-10 Score=109.83 Aligned_cols=64 Identities=28% Similarity=0.239 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 57 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 120 (165)
T 3twr_A 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120 (165)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCC
Confidence 4455666666666666666666666666666666666666666666666666666666666654
No 19
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.14 E-value=6.4e-11 Score=111.13 Aligned_cols=64 Identities=23% Similarity=0.206 Sum_probs=60.5
Q ss_pred HHHHHHhCCCCCCccCCCCCc-HHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQG-VLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~T-pLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|..|+| |||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus 59 ~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~ 123 (156)
T 1bi7_B 59 VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123 (156)
T ss_dssp HHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH
Confidence 667888999999999999999 9999999999999999999999999999999999999999885
No 20
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.14 E-value=1.2e-10 Score=108.42 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=64.5
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. ..+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 71 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 71 LHMAASEGH-ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHHHHHTC-HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCh-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 444444332 336778899999999999999999999999999999999999999999999999999999999885
No 21
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.12 E-value=1.2e-10 Score=115.16 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHH
Q 004380 696 VQKAAEG-GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY 755 (758)
Q Consensus 696 v~~Lle~-Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~ 755 (758)
++.|++. |+++|.+|..|+||||+||..|+.++|++||++|++++.+|..|+||||+|+.
T Consensus 122 v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 182 (222)
T 3ehr_A 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATN 182 (222)
T ss_dssp HHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCS
T ss_pred HHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcc
Confidence 3344444 44555555555555555555555555555555555555555555555555443
No 22
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.12 E-value=1.2e-10 Score=112.27 Aligned_cols=74 Identities=26% Similarity=0.129 Sum_probs=62.9
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D-~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
|+.++..+. ..+++.|++.|+++|.+| ..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..+
T Consensus 80 L~~A~~~~~-~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~ 154 (183)
T 3deo_A 80 LLFVAGLGS-DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154 (183)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence 444444332 336788999999999988 88999999999999999999999999999999999999999999764
No 23
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.12 E-value=1.7e-10 Score=107.53 Aligned_cols=65 Identities=25% Similarity=0.267 Sum_probs=61.8
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
-+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 48 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 112 (153)
T 1awc_B 48 STTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNH 112 (153)
T ss_dssp HHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 36778899999999999999999999999999999999999999999999999999999999885
No 24
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.12 E-value=3.2e-11 Score=110.62 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=60.1
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCC-CCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVN-GWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~-G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|..|+||||+||. |+.+++++|+++|++++.+|.. |+||||+|+..|+
T Consensus 27 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~ 90 (136)
T 1d9s_A 27 TVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90 (136)
T ss_dssp HHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCC
Confidence 5678889999999999999999999999 9999999999999999999999 9999999999885
No 25
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=120.05 Aligned_cols=63 Identities=19% Similarity=0.145 Sum_probs=54.3
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
+++.|++.|+++|..|..|+||||+||..|+.++|++||++||++|.+|..|+||||+|+.+|
T Consensus 167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence 567788888888888888888888888888888888888888888888888888888888765
No 26
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.11 E-value=1.1e-10 Score=117.82 Aligned_cols=58 Identities=22% Similarity=0.103 Sum_probs=29.2
Q ss_pred HHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccC-CCCCcHHHHH
Q 004380 696 VQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWA 753 (758)
Q Consensus 696 v~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD-~~G~TPLH~A 753 (758)
++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++.+| ..|+||||+|
T Consensus 70 v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 128 (229)
T 2vge_A 70 VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128 (229)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence 344444455555555555555555555555555555555555555543 3555555554
No 27
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.11 E-value=1.5e-10 Score=110.63 Aligned_cols=64 Identities=23% Similarity=0.292 Sum_probs=39.8
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+
T Consensus 54 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 117 (179)
T 3f6q_A 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 117 (179)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 4455556666666666666666666666666666666666666666666666666666665553
No 28
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.10 E-value=3.1e-10 Score=118.23 Aligned_cols=75 Identities=16% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCC------ccCCCCCcHHHHHHHc---CChhhHHHHHhcCCCccccCCCCCcHHHHH
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPC------VLDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWA 753 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N------~~D~~G~TpLHlAA~~---G~~e~V~lLL~~GAdiN~rD~~G~TPLH~A 753 (758)
+..+++.+.... +..++..|++++ ..|..|+||||+||.. |+.++|++|+++|+++|.+|..|+||||+|
T Consensus 134 l~~a~~~~d~~~-~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A 212 (278)
T 1dcq_A 134 LCEAVKTRDIFG-LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212 (278)
T ss_dssp HHHHHHTTCHHH-HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred hhhHhhhcccHH-HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHH
Confidence 444444444333 456778888854 4588999999999999 899999999999999999999999999999
Q ss_pred HHcCC
Q 004380 754 AYCGR 758 (758)
Q Consensus 754 A~~GH 758 (758)
|..|+
T Consensus 213 ~~~g~ 217 (278)
T 1dcq_A 213 CLTDN 217 (278)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 99986
No 29
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.09 E-value=1.4e-10 Score=108.08 Aligned_cols=75 Identities=23% Similarity=0.170 Sum_probs=64.5
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCC-ccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN-INFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAd-iN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. ..+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+
T Consensus 74 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 74 IHDAARAGF-LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 444444332 3367788999999999999999999999999999999999999998 69999999999999999886
No 30
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.09 E-value=6.4e-11 Score=106.54 Aligned_cols=76 Identities=28% Similarity=0.155 Sum_probs=65.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.++.++..+.. .+++.|++.|++++..|..|+||||+||..|+.+++++|+++|+++|.+|..|+||||+|+..|+
T Consensus 10 ~l~~A~~~~~~-~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~ 85 (123)
T 3aaa_C 10 EFMWALKNGDL-DEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH 85 (123)
T ss_dssp HHHHHHHTTCH-HHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCH-HHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence 34444444433 35667889999999999999999999999999999999999999999999999999999999885
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.09 E-value=3.5e-11 Score=124.52 Aligned_cols=65 Identities=25% Similarity=0.187 Sum_probs=61.9
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|+++|.+|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+||..|+
T Consensus 133 ~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~ 197 (269)
T 4b93_B 133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197 (269)
T ss_dssp HHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCC
Confidence 36678889999999999999999999999999999999999999999999999999999999986
No 32
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.08 E-value=3.7e-10 Score=100.00 Aligned_cols=64 Identities=34% Similarity=0.377 Sum_probs=61.0
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 50 ~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 113 (126)
T 1n0r_A 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 113 (126)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCc
Confidence 5678889999999999999999999999999999999999999999999999999999999875
No 33
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.08 E-value=2.2e-10 Score=108.34 Aligned_cols=75 Identities=16% Similarity=0.101 Sum_probs=64.6
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus 73 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 147 (172)
T 3v30_A 73 LSLASTGGY-TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147 (172)
T ss_dssp HHHHHHTTC-HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHCCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc
Confidence 444444443 336778899999999999999999999999999999999999999999999999999999999875
No 34
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.07 E-value=3.6e-10 Score=107.20 Aligned_cols=76 Identities=26% Similarity=0.302 Sum_probs=66.2
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.++.++..+. ..+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 50 ~L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 125 (169)
T 2y1l_E 50 PLHLAAFNGH-LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGH 125 (169)
T ss_dssp HHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCC-HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3555555443 336778899999999999999999999999999999999999999999999999999999999885
No 35
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.07 E-value=2.2e-10 Score=108.33 Aligned_cols=65 Identities=28% Similarity=0.252 Sum_probs=61.5
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 50 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 114 (172)
T 3v30_A 50 ETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNH 114 (172)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 36678889999999999999999999999999999999999999999999999999999999885
No 36
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.07 E-value=3.6e-10 Score=105.37 Aligned_cols=65 Identities=28% Similarity=0.312 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 51 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 115 (162)
T 1ihb_A 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115 (162)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 36678889999999999999999999999999999999999999999999999999999999885
No 37
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.06 E-value=2e-10 Score=110.80 Aligned_cols=74 Identities=28% Similarity=0.322 Sum_probs=63.6
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccC-CCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD-~~G~TPLH~AA~~GH 758 (758)
++.++..+..+ +++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|.+| ..|+||||+|+..|+
T Consensus 48 L~~A~~~g~~~-~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~ 122 (183)
T 3deo_A 48 WWTAARKADEQ-ALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 122 (183)
T ss_dssp HHHHHHTTCHH-HHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTC
T ss_pred HHHHHHcCCHH-HHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCc
Confidence 44444444333 5567777 89999999999999999999999999999999999999998 999999999999885
No 38
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.06 E-value=8e-11 Score=115.72 Aligned_cols=62 Identities=8% Similarity=-0.177 Sum_probs=42.7
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCC------hhhHHHHHhcCCCccccCCCCC-cHHHHHHHc
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGY------DWALEPTTVAGVNINFRDVNGW-TALHWAAYC 756 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~------~e~V~lLL~~GAdiN~rD~~G~-TPLH~AA~~ 756 (758)
+++.|++.|+++|.+|..|+||||+|+..|+ .++|++||++||++|.+|..|+ ||||+|+..
T Consensus 57 iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~ 125 (186)
T 3t8k_A 57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125 (186)
T ss_dssp HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGC
T ss_pred HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHc
Confidence 5566667777777777777777777777665 3556777777777777777777 777776653
No 39
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.06 E-value=2.6e-10 Score=108.09 Aligned_cols=75 Identities=23% Similarity=0.163 Sum_probs=66.3
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus 84 L~~A~~~~~-~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 84 LRLAALFGH-LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp HHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 444444433 346788999999999999999999999999999999999999999999999999999999999885
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.06 E-value=1.2e-10 Score=123.09 Aligned_cols=67 Identities=15% Similarity=0.053 Sum_probs=61.9
Q ss_pred HHHHHHHHHhCCCCCCc-cCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 692 QVWLVQKAAEGGKGPCV-LDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 692 ~e~Lv~~Lle~Gad~N~-~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
...+++.|++.|+++|. .|..|+||||+||..|+.++|++||++||++|.+|..|+||||+||.+||
T Consensus 109 ~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 109 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp HHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred HHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence 34567788899999999 89999999999999999999999999999999999999999999999874
No 41
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.06 E-value=4.1e-10 Score=108.53 Aligned_cols=64 Identities=25% Similarity=0.199 Sum_probs=61.0
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 116 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179 (192)
T ss_dssp HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc
Confidence 6778889999999999999999999999999999999999999999999999999999999886
No 42
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=118.11 Aligned_cols=65 Identities=23% Similarity=0.142 Sum_probs=62.1
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHh-cCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~-~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
-+++.|++.|+++|.+|..|+||||+||..|+.++|++|++ .|++++.+|..|+||||+|+..|+
T Consensus 197 ~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 197 DVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence 36788999999999999999999999999999999999999 899999999999999999999886
No 43
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.05 E-value=2.9e-10 Score=116.34 Aligned_cols=64 Identities=31% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|+++|..|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+
T Consensus 55 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~ 118 (299)
T 1s70_B 55 EVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY 118 (299)
T ss_dssp HHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 3455666667777777777777777777777777777777777777777777777777776664
No 44
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.05 E-value=3.5e-10 Score=113.83 Aligned_cols=65 Identities=20% Similarity=0.119 Sum_probs=60.6
Q ss_pred HHHHHHHhCCCCCCccC--------------CCCCcHHHHHHHcCChhhHHHHHh---cCCCccccCCCCCcHHHHHHHc
Q 004380 694 WLVQKAAEGGKGPCVLD--------------HCGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYC 756 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D--------------~~G~TpLHlAA~~G~~e~V~lLL~---~GAdiN~rD~~G~TPLH~AA~~ 756 (758)
-+++.|++.|++++..+ ..|+||||+||..|+.++|++|++ +|+++|.+|..|+||||+||..
T Consensus 107 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~ 186 (260)
T 3jxi_A 107 HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAI 186 (260)
T ss_dssp HHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHh
Confidence 36788999999999998 689999999999999999999999 9999999999999999999976
Q ss_pred CC
Q 004380 757 GR 758 (758)
Q Consensus 757 GH 758 (758)
|+
T Consensus 187 ~~ 188 (260)
T 3jxi_A 187 AD 188 (260)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 45
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.05 E-value=3.8e-10 Score=106.20 Aligned_cols=75 Identities=13% Similarity=0.090 Sum_probs=64.3
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 73 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 73 LSLACSKGY-TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY 147 (167)
T ss_dssp HHHHHHHTC-HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHcCC-HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence 444444433 336678888999999999999999999999999999999999999999999999999999999885
No 46
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.05 E-value=4.8e-10 Score=99.26 Aligned_cols=64 Identities=34% Similarity=0.377 Sum_probs=60.6
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus 17 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp HHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 5677888899999999999999999999999999999999999999999999999999999875
No 47
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.05 E-value=3e-10 Score=115.14 Aligned_cols=74 Identities=26% Similarity=0.129 Sum_probs=63.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccC-CCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLD-HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D-~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
|+.++..+. .-+++.|++.|+++|.+| ..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..+
T Consensus 81 L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 155 (244)
T 3ui2_A 81 LLFVAGLGS-DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 155 (244)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH
Confidence 444444333 346788999999999988 88999999999999999999999999999999999999999999754
No 48
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.04 E-value=3.4e-10 Score=109.14 Aligned_cols=75 Identities=24% Similarity=0.251 Sum_probs=65.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 72 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 146 (192)
T 2rfm_A 72 LIWAVKNNR-LGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146 (192)
T ss_dssp HHHHHHTTC-HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 334444332 336678888999999999999999999999999999999999999999999999999999999885
No 49
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.04 E-value=2.8e-10 Score=119.96 Aligned_cols=66 Identities=21% Similarity=0.070 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
..+++.|++.|+++|.+|..|+||||+||..|+.++|++||++||+++.+|..|+||||+|+..|+
T Consensus 206 ~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~ 271 (301)
T 2b0o_E 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 271 (301)
T ss_dssp HHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 347788999999999999999999999999999999999999999999999999999999999875
No 50
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.04 E-value=4.7e-10 Score=104.16 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+||..|+
T Consensus 49 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 113 (156)
T 1bd8_A 49 AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113 (156)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhCh
Confidence 36678889999999999999999999999999999999999999999999999999999999885
No 51
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.03 E-value=3.2e-10 Score=114.24 Aligned_cols=64 Identities=23% Similarity=0.168 Sum_probs=41.9
Q ss_pred HHHHHHhCCCCCCccCCC-CCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHC-GQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~-G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..+.. |+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+|+
T Consensus 173 ~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 173 MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred HHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC
Confidence 455566666666666543 6666666666666666666666666666666666666666666553
No 52
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.03 E-value=5e-10 Score=105.37 Aligned_cols=65 Identities=26% Similarity=0.303 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++..|..|.||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 50 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 114 (167)
T 3v31_A 50 AVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNH 114 (167)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCC
Confidence 36678889999999999999999999999999999999999999999999999999999999875
No 53
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.03 E-value=1.7e-10 Score=108.25 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=59.7
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCc-HHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWT-ALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~T-PLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+|+ .|+.++|++|+++|+++|.+|..|+| |||+||..|+
T Consensus 27 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~ 90 (156)
T 1bi7_B 27 EVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF 90 (156)
T ss_dssp HHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCC
Confidence 667889999999999999999999986 99999999999999999999999999 9999999885
No 54
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.03 E-value=6.3e-10 Score=106.28 Aligned_cols=72 Identities=26% Similarity=0.201 Sum_probs=61.4
Q ss_pred HHHhhhHHHHHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 686 LLKEKLQVWLVQKAAEG-GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 686 llkekl~e~Lv~~Lle~-Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.+..+. ++.|++. +.+++..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..|+
T Consensus 12 A~~~g~~~~-v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 12 QCREGNAVA-VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp HHHHTCHHH-HHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHcCCHHH-HHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence 344443333 4455555 77899999999999999999999999999999999999999999999999999885
No 55
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.02 E-value=5.4e-10 Score=113.66 Aligned_cols=65 Identities=23% Similarity=0.109 Sum_probs=60.9
Q ss_pred HHHHHHHhCCCCCCccCC--------------CCCcHHHHHHHcCChhhHHHHHh---cCCCccccCCCCCcHHHHHHHc
Q 004380 694 WLVQKAAEGGKGPCVLDH--------------CGQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYC 756 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~--------------~G~TpLHlAA~~G~~e~V~lLL~---~GAdiN~rD~~G~TPLH~AA~~ 756 (758)
-+++.|++.|++++..+. .|+||||+||..|+.++|++|++ +|+++|.+|..|+||||+||..
T Consensus 115 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~ 194 (273)
T 2pnn_A 115 TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194 (273)
T ss_dssp HHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHc
Confidence 367889999999999987 79999999999999999999999 9999999999999999999987
Q ss_pred CC
Q 004380 757 GR 758 (758)
Q Consensus 757 GH 758 (758)
|+
T Consensus 195 ~~ 196 (273)
T 2pnn_A 195 AD 196 (273)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 56
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.01 E-value=5.6e-10 Score=110.18 Aligned_cols=65 Identities=25% Similarity=0.233 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCCCCccCC-------------CCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDH-------------CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~-------------~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
-+++.|++.|++++..+. .|+||||+||..|+.++|++|+++|+++|.+|..|+||||+|+..|+
T Consensus 89 ~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~ 166 (232)
T 2rfa_A 89 NLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166 (232)
T ss_dssp HHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSC
T ss_pred HHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 367788999999998765 79999999999999999999999999999999999999999999875
No 57
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.01 E-value=2.3e-10 Score=128.34 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=46.1
Q ss_pred ccCCCCCcHHHHHHH---cCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 708 VLDHCGQGVLHFAAA---LGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 708 ~~D~~G~TpLHlAA~---~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
..|..|+||||+||. .|+.++|++||++||++|.+|..|+||||+||..||
T Consensus 166 ~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~ 219 (497)
T 3lvq_E 166 DAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQ 219 (497)
T ss_dssp SSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTC
T ss_pred ccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCC
Confidence 357889999999966 899999999999999999999999999999999886
No 58
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.00 E-value=7.4e-10 Score=111.38 Aligned_cols=63 Identities=19% Similarity=0.025 Sum_probs=59.2
Q ss_pred HHHHHHHhCCCCCCccCCC-------------CCcHHHHHHHcCChhhHHHHHh---cCCCccccCCCCCcHHHHHHHc
Q 004380 694 WLVQKAAEGGKGPCVLDHC-------------GQGVLHFAAALGYDWALEPTTV---AGVNINFRDVNGWTALHWAAYC 756 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~-------------G~TpLHlAA~~G~~e~V~lLL~---~GAdiN~rD~~G~TPLH~AA~~ 756 (758)
-+++.|++.|++++..|.. |+||||+||..|+.++|++|++ +|+++|.+|..|+||||+||..
T Consensus 104 ~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~ 182 (256)
T 2etb_A 104 QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMI 182 (256)
T ss_dssp HHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHc
Confidence 3677899999999999886 9999999999999999999999 9999999999999999999983
No 59
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=98.99 E-value=7.1e-10 Score=112.40 Aligned_cols=74 Identities=28% Similarity=0.316 Sum_probs=63.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccC-CCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRD-VNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD-~~G~TPLH~AA~~GH 758 (758)
|+.+++.+.. -+++.|++ |+++|.+|..|+||||+||..|+.++|++|+++|+++|.+| ..|+||||+||.+||
T Consensus 49 L~~A~~~g~~-~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 49 WWTAARKADE-QALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHHHTTTCH-HHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred HHHHHHcCCH-HHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 3334443332 35667777 89999999999999999999999999999999999999998 889999999999886
No 60
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.99 E-value=9.1e-10 Score=111.86 Aligned_cols=62 Identities=16% Similarity=-0.006 Sum_probs=33.1
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++. +..|+||||+|+..|
T Consensus 51 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~ 112 (261)
T 2xai_A 51 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRG 112 (261)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTT
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcC
Confidence 34455555555555555555555555555555555555555555553 233555555555554
No 61
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.99 E-value=8.3e-10 Score=106.29 Aligned_cols=75 Identities=17% Similarity=0.098 Sum_probs=60.9
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHH-hcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTT-VAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL-~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..|+||||+|+..|+.+++++|+ ..+++++.+|..|+||||+|+..|+
T Consensus 43 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~ 118 (201)
T 3hra_A 43 LNIAVHNND-IEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH 118 (201)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC
Confidence 444444332 33677888889999999999999999999999999999998 6677999999999999999998875
No 62
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.99 E-value=9.4e-10 Score=107.82 Aligned_cols=64 Identities=31% Similarity=0.347 Sum_probs=39.5
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcC-CCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG-VNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~G-AdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|..|+||||+||..|+.+++++|+++| +++|.+|..|+||||+|+..|+
T Consensus 122 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~ 186 (228)
T 2dzn_A 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 186 (228)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCC
Confidence 344555566666666666666666666666666666666666 6666666666666666665553
No 63
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=98.98 E-value=1.4e-10 Score=105.96 Aligned_cols=64 Identities=28% Similarity=0.204 Sum_probs=61.1
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 25 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 88 (137)
T 3c5r_A 25 SVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGH 88 (137)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTC
T ss_pred HHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCC
Confidence 5678889999999999999999999999999999999999999999999999999999999885
No 64
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=98.98 E-value=9.7e-10 Score=103.15 Aligned_cols=76 Identities=21% Similarity=0.149 Sum_probs=63.0
Q ss_pred HHHHHHHhhhHHHHHHHHHh-CCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAE-GGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle-~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.++.+++.+..+. ++.|++ .+.+++..+..|+||||+||..|+.+++++|+++|++++.+|..|+||||+||..|+
T Consensus 11 ~l~~A~~~g~~~~-v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 87 (165)
T 3twr_A 11 QLLEAAKAGDVET-VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGH 87 (165)
T ss_dssp HHHHHHHHTCHHH-HHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHhCCHHH-HHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCc
Confidence 4444555444444 445555 666788889999999999999999999999999999999999999999999999885
No 65
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.97 E-value=1e-09 Score=113.71 Aligned_cols=76 Identities=26% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.|+.++..+. .-+++.|++.|++++..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus 61 ~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 136 (351)
T 3utm_A 61 PLHLAAGYNR-VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136 (351)
T ss_dssp HHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHcCC-HHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 3444544433 346778899999999999999999999999999999999999999999999999999999999885
No 66
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=98.97 E-value=9.2e-10 Score=111.11 Aligned_cols=64 Identities=23% Similarity=0.224 Sum_probs=61.3
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 202 (253)
T 1yyh_A 139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 202 (253)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCC
Confidence 6778889999999999999999999999999999999999999999999999999999999885
No 67
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.97 E-value=1.5e-09 Score=106.20 Aligned_cols=75 Identities=12% Similarity=-0.116 Sum_probs=62.9
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. ..+++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 129 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 129 LHWAAAVNN-VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp HHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence 444444333 336678888899999999999999999999999999999999999999999999999999998875
No 68
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=98.95 E-value=5.6e-10 Score=112.49 Aligned_cols=64 Identities=28% Similarity=0.293 Sum_probs=59.4
Q ss_pred HHHHHHhCCCC---CCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKG---PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad---~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++ ++.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus 24 ~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~ 90 (282)
T 1oy3_D 24 FLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRA 90 (282)
T ss_dssp HHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTC
T ss_pred HHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 56677877887 78899999999999999999999999999999999999999999999998875
No 69
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=98.94 E-value=7.3e-10 Score=111.45 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=60.6
Q ss_pred HHHHHHHh---CCCCCCccCCCCCcHHHHHHHcCC---------hhhHHHHHhcCCCc-------cccCCCCCcHHHHHH
Q 004380 694 WLVQKAAE---GGKGPCVLDHCGQGVLHFAAALGY---------DWALEPTTVAGVNI-------NFRDVNGWTALHWAA 754 (758)
Q Consensus 694 ~Lv~~Lle---~Gad~N~~D~~G~TpLHlAA~~G~---------~e~V~lLL~~GAdi-------N~rD~~G~TPLH~AA 754 (758)
-+++.|++ .|+++|.+|..|+||||+||..|+ .+++++|+++|+++ +.+|..|+||||+|+
T Consensus 154 ~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 154 HIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence 36778899 899999999999999999999988 69999999999999 789999999999999
Q ss_pred HcCC
Q 004380 755 YCGR 758 (758)
Q Consensus 755 ~~GH 758 (758)
..||
T Consensus 234 ~~g~ 237 (260)
T 3jxi_A 234 KTGK 237 (260)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 9986
No 70
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.93 E-value=2.3e-09 Score=105.75 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=47.2
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
+++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 165 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227 (241)
T ss_dssp HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence 556677777777777777777777777777777777777777777777777777777776654
No 71
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=98.93 E-value=1.5e-09 Score=104.52 Aligned_cols=64 Identities=22% Similarity=0.183 Sum_probs=59.7
Q ss_pred HHHHHHhCC-CCCCccCCCCCcHHHHHHHcCC-----hhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGG-KGPCVLDHCGQGVLHFAAALGY-----DWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~G-ad~N~~D~~G~TpLHlAA~~G~-----~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.| ++++.+|..|+||||+|+..|. .+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 121 ~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 190 (201)
T 3hra_A 121 NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190 (201)
T ss_dssp HHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence 567778777 8999999999999999999998 899999999999999999999999999999885
No 72
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=98.93 E-value=4.6e-10 Score=110.92 Aligned_cols=64 Identities=27% Similarity=0.268 Sum_probs=61.1
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhc-CCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVA-GVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~-GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++.+|..|+||||+||..|+.++|++|+.+ |+++|.+|..|+||||+||..|+
T Consensus 88 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~ 152 (222)
T 3ehr_A 88 WLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGY 152 (222)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCC
Confidence 56788899999999999999999999999999999999999 99999999999999999999886
No 73
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=98.93 E-value=1.9e-09 Score=106.35 Aligned_cols=65 Identities=18% Similarity=0.055 Sum_probs=60.8
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhH----HHHHhcCCCc------cccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWAL----EPTTVAGVNI------NFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V----~lLL~~GAdi------N~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|+++|.+|..|+||||+|+..|+.+++ ++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 135 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~ 209 (232)
T 2rfa_A 135 EIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209 (232)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence 367788999999999999999999999999999988 9999999998 6899999999999999886
No 74
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.93 E-value=5.6e-10 Score=110.89 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDH-CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~-~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++.++. .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus 131 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 131 GIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCc
Confidence 367788899999999998 99999999999999999999999999999999999999999998875
No 75
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.93 E-value=1.5e-09 Score=118.33 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=62.0
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
-+++.|++.|+++|..|..|+||||+||..|+.++|++||.+||+++.+|..|+||||+|+..|+
T Consensus 249 ~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~ 313 (368)
T 3jue_A 249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN 313 (368)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCC
Confidence 36788999999999999999999999999999999999999999999999999999999999885
No 76
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=98.93 E-value=1.9e-09 Score=111.61 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=40.5
Q ss_pred HHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 686 LLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 686 llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.+..+.+...|...+++++..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..||
T Consensus 31 A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 103 (351)
T 3utm_A 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103 (351)
T ss_dssp HHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCC
Confidence 3333333333333334455555566666666666666666666666666666666666666666666665554
No 77
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=98.93 E-value=8.6e-10 Score=110.89 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHh---CCCCCCccCCCCCcHHHHHHH--cCChh-------hHHHHHhcCCCc-------cccCCCCCcHHHHHH
Q 004380 694 WLVQKAAE---GGKGPCVLDHCGQGVLHFAAA--LGYDW-------ALEPTTVAGVNI-------NFRDVNGWTALHWAA 754 (758)
Q Consensus 694 ~Lv~~Lle---~Gad~N~~D~~G~TpLHlAA~--~G~~e-------~V~lLL~~GAdi-------N~rD~~G~TPLH~AA 754 (758)
-+++.|++ .|+++|.+|..|+||||+||. .|+.+ ++++|+++|+++ +.+|..|+||||+|+
T Consensus 150 ~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~ 229 (256)
T 2etb_A 150 DVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAA 229 (256)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHH
Confidence 36778888 999999999999999999999 77887 999999999999 999999999999999
Q ss_pred HcCC
Q 004380 755 YCGR 758 (758)
Q Consensus 755 ~~GH 758 (758)
..|+
T Consensus 230 ~~g~ 233 (256)
T 2etb_A 230 KEGK 233 (256)
T ss_dssp HTTC
T ss_pred HhCC
Confidence 9986
No 78
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.93 E-value=1.2e-09 Score=114.55 Aligned_cols=57 Identities=18% Similarity=0.003 Sum_probs=37.4
Q ss_pred HHHHh-CCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 697 QKAAE-GGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 697 ~~Lle-~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+.|++ .|+++|.+|..|+||||+||..|+.++|++||++||++|.+ ||||+|+..||
T Consensus 256 ~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~ 313 (337)
T 4g8k_A 256 QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYD 313 (337)
T ss_dssp HHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTC
T ss_pred HHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCC
Confidence 34443 46667777777777777777777777777777777766543 47777776664
No 79
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=98.93 E-value=1.1e-09 Score=113.08 Aligned_cols=65 Identities=23% Similarity=0.180 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|+.++..|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+||..|+
T Consensus 164 ~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 164 ETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp HHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 35667778888888889999999999999999999999999999999999999999999999886
No 80
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=98.93 E-value=2.2e-09 Score=104.98 Aligned_cols=65 Identities=23% Similarity=0.200 Sum_probs=61.7
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++..|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 106 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 170 (223)
T 2f8y_A 106 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170 (223)
T ss_dssp HHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCC
Confidence 36778899999999999999999999999999999999999999999999999999999999875
No 81
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=98.92 E-value=9.6e-10 Score=94.35 Aligned_cols=47 Identities=38% Similarity=0.426 Sum_probs=44.0
Q ss_pred CCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 712 CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 712 ~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+|+||||+||..|+.+++++|++.|+++|.+|..|+||||+|+..|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~ 47 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 47 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence 48999999999999999999999999999999999999999999885
No 82
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.92 E-value=1.2e-09 Score=107.86 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=61.2
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 158 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 158 DIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999998774
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=98.91 E-value=2.7e-10 Score=111.95 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=59.0
Q ss_pred HHHHHHhCCCCCCccCCCCC-cHHHHHHHcCC-----hhhHHHHHh-cCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQ-GVLHFAAALGY-----DWALEPTTV-AGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~-TpLHlAA~~G~-----~e~V~lLL~-~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|+++|.+|..|+ ||||+|+..|+ .+++++|++ +|+++|.+|..|+||||+|+.+|+
T Consensus 96 iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~ 166 (186)
T 3t8k_A 96 LCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK 166 (186)
T ss_dssp HHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTC
T ss_pred HHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCC
Confidence 67789999999999999999 99999999655 458999999 999999999999999999999885
No 84
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.91 E-value=2e-09 Score=111.28 Aligned_cols=62 Identities=16% Similarity=-0.011 Sum_probs=32.7
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
+++.|++.|++++..|..|+||||+||..|+.++|++|+++|++++..+ .|+||||+|+..|
T Consensus 107 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g 168 (285)
T 3d9h_A 107 CVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRG 168 (285)
T ss_dssp HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcC
Confidence 3444555555555555555555555555555555555555555554332 2555555555544
No 85
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.91 E-value=1.2e-09 Score=115.77 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCC-----CCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 693 VWLVQKAAEGGKG-----PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad-----~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
..+++.|++.|++ +|..|..|+||||+||..|+.++|++||++|+++|.+|..|+||||+|+..|+
T Consensus 186 ~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~ 256 (364)
T 3ljn_A 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM 256 (364)
T ss_dssp HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC
T ss_pred HHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Confidence 3467788888888 99999999999999999999999999999999999999999999999999886
No 86
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.90 E-value=2.8e-09 Score=104.82 Aligned_cols=74 Identities=15% Similarity=0.003 Sum_probs=59.4
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
++.++..+. .-+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus 143 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~ 216 (231)
T 3aji_A 143 MHRAAAKGN-LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGL 216 (231)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHH
T ss_pred HHHHHHcCC-HHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhH
Confidence 444443332 23567888888999988999999999999999999999999999999999999999999987654
No 87
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=98.89 E-value=3.9e-09 Score=103.79 Aligned_cols=75 Identities=21% Similarity=0.128 Sum_probs=59.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 77 L~~A~~~~~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 77 LHIAASAGX-DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp HHHHHHHTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHcCH-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 344444332 235677888888888888888888888888888888888888888888888888888888888775
No 88
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=98.89 E-value=1.3e-09 Score=110.75 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=60.4
Q ss_pred HHHHHHHh---CCCCCCccCCCCCcHHHHHHHcCC---------hhhHHHHHhcCCCcc-------ccCCCCCcHHHHHH
Q 004380 694 WLVQKAAE---GGKGPCVLDHCGQGVLHFAAALGY---------DWALEPTTVAGVNIN-------FRDVNGWTALHWAA 754 (758)
Q Consensus 694 ~Lv~~Lle---~Gad~N~~D~~G~TpLHlAA~~G~---------~e~V~lLL~~GAdiN-------~rD~~G~TPLH~AA 754 (758)
-+++.|++ .|++++.+|..|+||||+||..|+ .+++++|+++|+++| .+|..|+||||+|+
T Consensus 162 ~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~ 241 (273)
T 2pnn_A 162 AIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA 241 (273)
T ss_dssp HHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence 36778899 899999999999999999999998 799999999999997 49999999999999
Q ss_pred HcCC
Q 004380 755 YCGR 758 (758)
Q Consensus 755 ~~GH 758 (758)
..|+
T Consensus 242 ~~g~ 245 (273)
T 2pnn_A 242 SSGK 245 (273)
T ss_dssp HTTC
T ss_pred HhCh
Confidence 9986
No 89
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=98.89 E-value=3.8e-09 Score=103.44 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=61.0
Q ss_pred HHHHHHHhCC--CCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGG--KGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~G--ad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+++.|++.| ++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 86 ~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 152 (228)
T 2dzn_A 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGS 152 (228)
T ss_dssp HHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 3677888888 8899999999999999999999999999999999999999999999999999885
No 90
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=98.88 E-value=2e-09 Score=117.45 Aligned_cols=76 Identities=22% Similarity=0.126 Sum_probs=65.9
Q ss_pred HHHHHHHh-hhHHHHHHHHHhCCCCCCccC--CCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKE-KLQVWLVQKAAEGGKGPCVLD--HCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llke-kl~e~Lv~~Lle~Gad~N~~D--~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.|+.++.. .. ..+++.|++.|+++|..+ ..|.||||+||..|+.++|++||.+|+++|.+|..|+||||+|+..|+
T Consensus 202 ~L~~Aa~~~g~-~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~ 280 (368)
T 3jue_A 202 LLFRASGHPPS-LPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH 280 (368)
T ss_dssp HHHHHTSSSCC-HHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHccCC-HHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCc
Confidence 44444444 32 335678889999999988 899999999999999999999999999999999999999999999886
No 91
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=98.88 E-value=2.4e-09 Score=112.87 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=63.4
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCc------cCCCCCcHHHHHHHc---CChhhHHHHHhcCCCccccCCCCCcHHHHH
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCV------LDHCGQGVLHFAAAL---GYDWALEPTTVAGVNINFRDVNGWTALHWA 753 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~------~D~~G~TpLHlAA~~---G~~e~V~lLL~~GAdiN~rD~~G~TPLH~A 753 (758)
|..++..+... ++..|++.|++++. .+..|+||||+||.. |+.++|++||.+|+++|.+|..|+||||+|
T Consensus 155 L~~A~~~g~~~-~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A 233 (301)
T 2b0o_E 155 LWTAICNRDLL-SVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYA 233 (301)
T ss_dssp HHHHHHTTCHH-HHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHH
T ss_pred HhhhhhccCHH-HHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 33444444333 34567799999998 689999999999997 899999999999999999999999999999
Q ss_pred HHcCC
Q 004380 754 AYCGR 758 (758)
Q Consensus 754 A~~GH 758 (758)
|..|+
T Consensus 234 ~~~g~ 238 (301)
T 2b0o_E 234 ALYNQ 238 (301)
T ss_dssp HHTTC
T ss_pred HHcCC
Confidence 99885
No 92
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=98.88 E-value=3.9e-09 Score=104.26 Aligned_cols=65 Identities=26% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
-+++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 125 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 189 (237)
T 3b7b_A 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189 (237)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 36778899999999999999999999999999999999999999999999999999999999875
No 93
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.88 E-value=3.4e-09 Score=106.21 Aligned_cols=66 Identities=20% Similarity=0.045 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHh-cCCCccccCCCCCcHHHHHHHcCC
Q 004380 693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTV-AGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~-~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
..+++.|++.|++++.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+
T Consensus 199 ~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~ 265 (285)
T 1wdy_A 199 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL 265 (285)
T ss_dssp HHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc
Confidence 346778899999999999999999999999999999999999 899999999999999999999885
No 94
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=98.87 E-value=5.7e-09 Score=104.57 Aligned_cols=76 Identities=22% Similarity=0.213 Sum_probs=66.2
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.|+.++..+. .-+++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 42 ~L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 117 (285)
T 1wdy_A 42 PLHNAVQMSR-EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117 (285)
T ss_dssp HHHHHHHTTC-HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred HHHHHHHcCC-HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence 4555555443 336778899999999999999999999999999999999999999999999999999999999885
No 95
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=98.87 E-value=4.9e-09 Score=103.32 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=44.9
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCC----CccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGV----NINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GA----diN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+|+..|+.+++++|+..|+ +++.+|..|+||||+|+..|+
T Consensus 61 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~ 128 (241)
T 1k1a_A 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC 128 (241)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC
Confidence 4556666777777777777777777777777777777777766 666777777777777776654
No 96
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=98.86 E-value=2.6e-09 Score=107.40 Aligned_cols=65 Identities=18% Similarity=0.003 Sum_probs=59.4
Q ss_pred HHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCC-cHHHHH--HHcCC
Q 004380 694 WLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGW-TALHWA--AYCGR 758 (758)
Q Consensus 694 ~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~-TPLH~A--A~~GH 758 (758)
.+++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|. ||||+| +..||
T Consensus 84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~ 151 (239)
T 1ycs_B 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY 151 (239)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC
T ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhcc
Confidence 367788899999999999999999999999999999999999999999998887 999999 55554
No 97
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.85 E-value=1.4e-09 Score=112.69 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=53.1
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCC-CcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNG-WTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G-~TPLH~AA~~GH 758 (758)
+++.|++.|++++..|..|+||||+||..|+.++|++|+++|++++.+|..| .||||+|+..|+
T Consensus 77 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence 5677788888888888888888888888888888888888888888888888 588888888775
No 98
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=98.85 E-value=1.2e-09 Score=110.28 Aligned_cols=76 Identities=29% Similarity=0.312 Sum_probs=65.8
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.|+.++..+.. -+++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|+++|.+|..|+||||+||..|+
T Consensus 24 ~L~~A~~~g~~-~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~ 99 (229)
T 2vge_A 24 LLLDAALTGEL-EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND 99 (229)
T ss_dssp HHHHHHHHTCH-HHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHcCCH-HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34444444433 35677888999999999999999999999999999999999999999999999999999999885
No 99
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.83 E-value=4.6e-09 Score=112.84 Aligned_cols=64 Identities=19% Similarity=0.104 Sum_probs=59.4
Q ss_pred HHHHHHhC-CCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEG-GKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~-Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++. |+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+.+||
T Consensus 294 ~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~ 358 (373)
T 2fo1_E 294 IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH 358 (373)
T ss_dssp HHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred HHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence 55667755 59999999999999999999999999999999999999999999999999999986
No 100
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=98.83 E-value=2.9e-09 Score=112.73 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCC-----ccccCCCCCcHHHHHHHcCC
Q 004380 693 VWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVN-----INFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAd-----iN~rD~~G~TPLH~AA~~GH 758 (758)
.-+++.|++.|++++..|..|+||||+||..|+.++|++|+++|++ +|.+|..|+||||+||..||
T Consensus 153 ~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~ 223 (364)
T 3ljn_A 153 LEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW 223 (364)
T ss_dssp HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC
Confidence 3467788899999999999999999999999999999999999999 99999999999999999886
No 101
>3mlp_A Transcription factor COE1; transcription factor, pseudo-IG-fold, TIG-domain, IPT-domain loop-helix; HET: DNA CIT; 2.80A {Mus musculus} PDB: 3n50_A
Probab=98.83 E-value=5.7e-09 Score=110.63 Aligned_cols=89 Identities=21% Similarity=0.352 Sum_probs=76.7
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCC-CCCcceeEEEEeCCCc
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-QKVGRVPFYVTCSNRL 585 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h~pG~VpLyVtcsn~~ 585 (758)
.+.|+.++|+.|+++||+.|+|.|..|.+|.. |+||...+-.+++....|||++|| |.||.|.|.+...+.+
T Consensus 231 tP~IkaIsPnEG~~tGG~tV~IiGenFf~GLQ-------VvFGtt~vWselITphAIRV~tPPr~~PGvVdVTLs~ksKq 303 (402)
T 3mlp_A 231 TPCIKAISPSEGWTTGGATVIIIGDNFFDGLQ-------VIFGTMLVWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQ 303 (402)
T ss_dssp CCEEEECSSCEECTTCCCEEEEEEECCCTTCE-------EEETTEEECEEEEETTEEEEECCCCSSCEEEEEEEEETTEE
T ss_pred CcceEEecCCCCCccCCeEEEEeCCCcccCCE-------EEEccEeeeeEEecccceEEECCCCCCCCceEEEEEecCcc
Confidence 46999999999999999999999999999954 999999999999999999999999 5999999999998877
Q ss_pred ccC-cceecccccCCCCC
Q 004380 586 SCS-EVREFEYRASHIPD 602 (758)
Q Consensus 586 acS-EVreFEYr~~~~~~ 602 (758)
.|- ....|.|-....+-
T Consensus 304 f~kg~pgrF~YtALnePt 321 (402)
T 3mlp_A 304 FCKGTPGRFIYTALNEPT 321 (402)
T ss_dssp ESTTSCEEEEEC---CCT
T ss_pred cccCCCCceeeecCCCCc
Confidence 665 34688887654443
No 102
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.83 E-value=5.9e-09 Score=112.96 Aligned_cols=75 Identities=20% Similarity=0.123 Sum_probs=62.3
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
|+.++..+. .-+++.|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..||
T Consensus 51 L~~A~~~g~-~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~ 125 (437)
T 1n11_A 51 LHMAARAGH-TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 125 (437)
T ss_dssp HHHHHHHTC-HHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHcCC-HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 444444332 336778888899999999999999999999999999999999999999999999999999998886
No 103
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=98.83 E-value=5.1e-09 Score=113.47 Aligned_cols=64 Identities=23% Similarity=0.097 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|+++|.+|..|+||||+|+..|+.++|++|+++||+++.+|..|+||||+|+..|+
T Consensus 326 ~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~ 389 (437)
T 1n11_A 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389 (437)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence 6778899999999999999999999999999999999999999999999999999999999885
No 104
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=98.82 E-value=8.1e-09 Score=102.50 Aligned_cols=64 Identities=27% Similarity=0.263 Sum_probs=58.0
Q ss_pred HHHHHHhCCCC------CCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCC-CCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKG------PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDV-NGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad------~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~-~G~TPLH~AA~~GH 758 (758)
+++.|++.|++ ++..+..|.||||+||..|+.++|++|+++|++++.+|. .|+||||+|+..|+
T Consensus 93 ~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 163 (236)
T 1ikn_D 93 SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN 163 (236)
T ss_dssp HHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred HHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 56678888765 466888999999999999999999999999999999998 99999999999885
No 105
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=98.81 E-value=6.3e-09 Score=105.60 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=47.5
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
+++.|++.|+++|. +..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..+
T Consensus 149 ~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 149 CVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp HHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC
T ss_pred HHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc
Confidence 55677777777773 777788888888888888888888888888888888888888877554
No 106
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=98.80 E-value=4.2e-09 Score=108.99 Aligned_cols=74 Identities=8% Similarity=-0.125 Sum_probs=54.5
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCC-CcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCG-QGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G-~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
++.++..+. .-+++.|++.|++++..|..| .||||+|+..|+.+++++|+++|+++... ..|+||||+||..|+
T Consensus 99 L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 99 LYYAVDSGN-MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGH 173 (285)
T ss_dssp HHHHHHTTC-HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTC
T ss_pred HHHHHHcCC-HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcCh
Confidence 444444332 335677788888888888888 78888888888888888888888877322 278888888888775
No 107
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=98.80 E-value=3.2e-09 Score=108.58 Aligned_cols=74 Identities=24% Similarity=0.138 Sum_probs=64.4
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
|+.++..+. .-+++.|++.|++++..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus 77 L~~A~~~g~-~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 150 (299)
T 1s70_B 77 LHQACIDDN-VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA 150 (299)
T ss_dssp HHHHHHTTC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred HHHHHHcCC-HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc
Confidence 444444433 33678899999999999999999999999999999999999999999999999999999998654
No 108
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.79 E-value=5.4e-09 Score=102.25 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDH-CGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~-~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 222 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKN 222 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence 56678899999999887 99999999999999999999999999999999999999999999885
No 109
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=98.79 E-value=1.6e-09 Score=114.51 Aligned_cols=59 Identities=17% Similarity=0.110 Sum_probs=52.4
Q ss_pred HHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 004380 697 QKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 697 ~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~G 757 (758)
+.|++. ++|.+|..|+||||+||..|+.++|++||++||+++.+|..|+||||+||..|
T Consensus 269 ~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 269 KWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred HHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 344444 58999999999999999999999999999999999999999999999999876
No 110
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=98.79 E-value=8.8e-09 Score=110.64 Aligned_cols=63 Identities=27% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcC---CCccccCCCCCcHHHHHHHcC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAG---VNINFRDVNGWTALHWAAYCG 757 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~G---AdiN~rD~~G~TPLH~AA~~G 757 (758)
+++.|++.|++++..|..|+||||+||..|+.++|++|+.+| ++++.+|..|+||||+||..|
T Consensus 181 iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~ 246 (373)
T 2fo1_E 181 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNE 246 (373)
T ss_dssp HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSC
T ss_pred HHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhC
Confidence 556677777777777777777777777777777777777776 677777777777777777665
No 111
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=98.78 E-value=1.3e-08 Score=106.54 Aligned_cols=76 Identities=28% Similarity=0.264 Sum_probs=59.4
Q ss_pred HHHHHHHhhhHHHHHHHHHhCCCCCCccCC-CCCcHHHHHHHcCChhhHHHHHhcCCCccc-------------------
Q 004380 682 LVQKLLKEKLQVWLVQKAAEGGKGPCVLDH-CGQGVLHFAAALGYDWALEPTTVAGVNINF------------------- 741 (758)
Q Consensus 682 LL~~llkekl~e~Lv~~Lle~Gad~N~~D~-~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~------------------- 741 (758)
.|+.+++.+.. -+++.|++.|+++|.++. .|+||||+||..|+.++|++||++||+++.
T Consensus 28 ~L~~Av~~g~~-~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~ 106 (337)
T 4g8k_A 28 LLIKAVQNEDV-DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVK 106 (337)
T ss_dssp HHHHHHHTTCH-HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHHHHcCCH-HHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccch
Confidence 44445554433 367889999999998875 599999999999999999999999987654
Q ss_pred --------------cCCCCCcHHHHHHHcCC
Q 004380 742 --------------RDVNGWTALHWAAYCGR 758 (758)
Q Consensus 742 --------------rD~~G~TPLH~AA~~GH 758 (758)
+|..|+||||+|+..|+
T Consensus 107 ~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~ 137 (337)
T 4g8k_A 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGK 137 (337)
T ss_dssp HHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred hhHHhhhccchhhhhccCCCCHHHHHHHcCc
Confidence 56677777777777664
No 112
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=98.75 E-value=1.6e-08 Score=104.50 Aligned_cols=60 Identities=13% Similarity=0.054 Sum_probs=44.7
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHH
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAY 755 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~ 755 (758)
+++.|++.|++++ .+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus 205 ~v~~Ll~~ga~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 264 (285)
T 3d9h_A 205 CVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264 (285)
T ss_dssp HHHHHHHTTCCTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred HHHHHHHCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC
Confidence 5566777777777 37777777777777777777777777777777777777777777763
No 113
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=98.72 E-value=3.2e-08 Score=96.75 Aligned_cols=64 Identities=27% Similarity=0.282 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCCCccCCCCCcHHHHHHHcCC-hhhHHHHHhcCCCccccCC-CCCcHHHHHHHcCC
Q 004380 695 LVQKAAEGGKGPCVLDHCGQGVLHFAAALGY-DWALEPTTVAGVNINFRDV-NGWTALHWAAYCGR 758 (758)
Q Consensus 695 Lv~~Lle~Gad~N~~D~~G~TpLHlAA~~G~-~e~V~lLL~~GAdiN~rD~-~G~TPLH~AA~~GH 758 (758)
+++.|++.|++++..+..|.||||+|+..|. ..++++|+..|++++.++. .|+||||+|+..|+
T Consensus 124 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~ 189 (240)
T 3eu9_A 124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN 189 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTC
T ss_pred HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCC
Confidence 4555666666666666666666666665555 5666666666666666665 66666666666553
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=98.71 E-value=8.2e-09 Score=91.72 Aligned_cols=53 Identities=28% Similarity=0.213 Sum_probs=46.8
Q ss_pred CCccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 706 PCVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 706 ~N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
+...|.+|.|+||+||..|+.+++++|+++|+++|.+|..|+||||+||..|+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~ 69 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGH 69 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence 34478899999999999999999999999999999999999999999999885
No 115
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=98.70 E-value=9.1e-09 Score=91.08 Aligned_cols=51 Identities=31% Similarity=0.291 Sum_probs=48.6
Q ss_pred ccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 004380 708 VLDHCGQGVLHFAAALGYDWALEPTTVAGVNINFRDVNGWTALHWAAYCGR 758 (758)
Q Consensus 708 ~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~rD~~G~TPLH~AA~~GH 758 (758)
.+|..|+||||+||..|..+++++|+++|++++.+|..|+||||+||..|+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~ 54 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH 54 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence 478999999999999999999999999999999999999999999998875
No 116
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.34 E-value=8.3e-08 Score=104.86 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCCCC---CccCCCCCcHHHHHHHcCChhhHHHHHhcCCCccc--cCCCCCcHHHHHH-HcCC
Q 004380 693 VWLVQKAAEGGKGP---CVLDHCGQGVLHFAAALGYDWALEPTTVAGVNINF--RDVNGWTALHWAA-YCGR 758 (758)
Q Consensus 693 e~Lv~~Lle~Gad~---N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAdiN~--rD~~G~TPLH~AA-~~GH 758 (758)
.-+++.|++.|+++ +..+.+ +||||+||..|+.++|++|+++|++++. +|..|+||||+|| ..||
T Consensus 141 ~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~ 211 (376)
T 2aja_A 141 LHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGH 211 (376)
T ss_dssp HHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCC
Confidence 34677888888752 222333 8999999999999999999999999888 8889999999999 8886
No 117
>1uad_C RSEC5, exocyst complex component SEC5; small GTP-binding protein, immunogloblin-like fold, beta- sandwich, endocytosis/exocytosis complex; HET: GNP; 2.10A {Rattus norvegicus} SCOP: b.1.18.18 PDB: 1hk6_A
Probab=98.15 E-value=5.2e-06 Score=74.62 Aligned_cols=84 Identities=18% Similarity=0.135 Sum_probs=62.4
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccc-eEEeeCCcee-e-eEEEecCceeeecCCCC--CcceeEEEEe
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCK-WSCMFGEIEV-P-AEIVAGGVLRCHTSSQK--VGRVPFYVTC 581 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~-~~cmFGd~eV-p-aei~q~GvLrC~~PPh~--pG~VpLyVtc 581 (758)
.+.|++|+|..|+. ||+|+|.|++|.... +. ..|.+|+++. + ++......|+|.++|+. .|.|.|+|..
T Consensus 7 ~P~It~i~P~~Gp~--GT~vTI~G~nlg~~~----sdv~~V~vgg~~C~~~~~~~s~~~IvC~~~~~~~~~g~V~V~v~~ 80 (99)
T 1uad_C 7 PPLVTGISPNEGIP--WTKVTIRGENLGTGP----TDLIGLTICGHNCLLTAEWMSASKIVCRVGQAKNDKGDIIVTTKS 80 (99)
T ss_dssp CCEEEEEESSEEST--TCEEEEEEECSCSSG----GGEEEEEETTEECGGGCEEEETTEEEEECCCCSSSSCCEEEEETT
T ss_pred CCEEEEEECCCcCC--CCEEEEEEEeCCCCc----ccceEEEECCEEceEeeceeecCEEEEEeCCCCCcceeEEEEECC
Confidence 57999999999988 799999999998762 12 4699999843 3 36788999999999874 5666666622
Q ss_pred CCCcccCcceecccccC
Q 004380 582 SNRLSCSEVREFEYRAS 598 (758)
Q Consensus 582 sn~~acSEVreFEYr~~ 598 (758)
++.+.|. ..|+|.++
T Consensus 81 -~~~~~s~-~~F~y~~P 95 (99)
T 1uad_C 81 -GGRGTST-VSFKLLKP 95 (99)
T ss_dssp -TEECEES-SCCEECCC
T ss_pred -CCcEEec-ceEEEeCc
Confidence 2233444 38999865
No 118
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=98.09 E-value=1.5e-06 Score=94.94 Aligned_cols=74 Identities=14% Similarity=-0.025 Sum_probs=52.2
Q ss_pred HHHHHHhhhHHHHHHHHHhCCCCC---CccCCCCCcHHHHHHHcCChhhHHHHHhcCCC---ccccCCCCCcHHHHHHHc
Q 004380 683 VQKLLKEKLQVWLVQKAAEGGKGP---CVLDHCGQGVLHFAAALGYDWALEPTTVAGVN---INFRDVNGWTALHWAAYC 756 (758)
Q Consensus 683 L~~llkekl~e~Lv~~Lle~Gad~---N~~D~~G~TpLHlAA~~G~~e~V~lLL~~GAd---iN~rD~~G~TPLH~AA~~ 756 (758)
|+.+++.+.. -+++.|++.|+.. +..+..|.||||+||..|+.++|++|+++|++ ++..+.+ +||||+||..
T Consensus 96 Lh~Aa~~G~~-e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~ 173 (376)
T 2aja_A 96 CFVAAITGCS-SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAEN 173 (376)
T ss_dssp HHHHHHHCCH-HHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHT
T ss_pred HHHHHHcCCH-HHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHC
Confidence 3434443322 3677888888732 23456789999999999999999999999986 3333333 9999999999
Q ss_pred CC
Q 004380 757 GR 758 (758)
Q Consensus 757 GH 758 (758)
||
T Consensus 174 G~ 175 (376)
T 2aja_A 174 GH 175 (376)
T ss_dssp TC
T ss_pred CC
Confidence 97
No 119
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.91 E-value=2.1e-05 Score=86.80 Aligned_cols=87 Identities=17% Similarity=0.233 Sum_probs=72.0
Q ss_pred CCCceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCCCCC-cceeEEEEeC
Q 004380 504 QDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKV-GRVPFYVTCS 582 (758)
Q Consensus 504 q~q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PPh~p-G~VpLyVtcs 582 (758)
..|...|++|+|..|. .||+|+|.|++|... .+...|+||+.+.....+.+..|.|.+|.+.+ |.++|.|...
T Consensus 14 ~~~p~~i~~~~P~~g~--~~~~~~i~G~nfg~~----~~~~~v~~~~~~~~v~~~~~~~i~~~vp~~~~~g~~~v~~~~~ 87 (430)
T 3tc9_A 14 PNKPVVISEFSPKEGG--LGTRMLLYGENFGSD----ISKIKVTIGGQDSKVVGAKGKSLYCVVPAKAYDGDIKLSILND 87 (430)
T ss_dssp TTSCCEEEEEECSEEC--TTCEEEEEEECCCSC----GGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEEECT
T ss_pred CCCCCEEEEEcCCCCC--CCCEEEEEEEcCCCC----ccceEEEECCEEEEEEEECCCEEEEEeCCCCCCccEEEEEecC
Confidence 4566699999999999 799999999999763 36789999999888888999999999999988 9999999876
Q ss_pred CCc----ccCcceeccccc
Q 004380 583 NRL----SCSEVREFEYRA 597 (758)
Q Consensus 583 n~~----acSEVreFEYr~ 597 (758)
+.. +.+ -..|+|..
T Consensus 88 ~~~~~~~~~~-~~~F~y~~ 105 (430)
T 3tc9_A 88 EGEEIANTEA-NEKFVYQK 105 (430)
T ss_dssp TSCEEEEEEC-SSCCEECC
T ss_pred CcceeeEEEE-eeEEEEEE
Confidence 632 222 35677764
No 120
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=97.72 E-value=6e-05 Score=82.39 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCCceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCC----ceeeeEEEecCceeeecCCCCCcceeEEE
Q 004380 504 QDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGE----IEVPAEIVAGGVLRCHTSSQKVGRVPFYV 579 (758)
Q Consensus 504 q~q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd----~eVpaei~q~GvLrC~~PPh~pG~VpLyV 579 (758)
+.|...|++|+|..|. .||||+|.|++|... .+...|+||+ .+.....+....|.|++|.+.+|.+++.|
T Consensus 14 ~~~~~~~~~~~p~~g~--~~~~~~i~g~nfg~~----~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~vp~~~~g~~~i~v 87 (409)
T 3hrp_A 14 PNQPVTVESFMPVEGK--LREKVIVKGSNFGTD----KSKVKVYFVDEAAERLSTVIGIDNNTLYCLAPRQLPGGNRIKV 87 (409)
T ss_dssp TTSCCEEEEEECSEEC--TTCEEEEEEECCCSC----GGGEEEEEECSSCEEEEEEEEEETTEEEEECCSCCSEEEEEEE
T ss_pred CCCCcEEEEEcCCCCC--CCcEEEEEeEcCCCC----ccceEEEECCcccceEEEEEEECCCEEEEEECCCCCCcEEEEE
Confidence 4666799999999988 799999999999874 2678999999 77777778999999999999999999999
Q ss_pred EeCCCcccCcceeccccc
Q 004380 580 TCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 580 tcsn~~acSEVreFEYr~ 597 (758)
...+..+.+ -..|.|..
T Consensus 88 ~~~~~~~~~-~~~F~y~~ 104 (409)
T 3hrp_A 88 IVDGKEVTT-DGTFKYEQ 104 (409)
T ss_dssp EETTEEEEC-SSCEEECC
T ss_pred EECCeeEEE-eeeEEEec
Confidence 887754332 24566654
No 121
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.72 E-value=4.6e-05 Score=86.42 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=70.7
Q ss_pred CCCceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCCCCC-cceeEEEEeC
Q 004380 504 QDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKV-GRVPFYVTCS 582 (758)
Q Consensus 504 q~q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PPh~p-G~VpLyVtcs 582 (758)
+.|...|++|+|..|.. ||+|+|.|+.|... .+...|+||+.++...-+.+..|.|++|.|.. |.++|.|...
T Consensus 14 p~~p~~i~~~~P~~G~~--~t~~~I~G~nFg~d----~~~i~V~~~~~~a~v~~~~~~~i~~~vp~~~~~G~~~v~v~~~ 87 (496)
T 3kya_A 14 PSKPVAISDFTPKEGGA--YQKLLIYGENFGTD----VSKVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVGEG 87 (496)
T ss_dssp TTSCCEEEEEECSEECT--TCEEEEEEECCCSC----GGGEEEEETTEEECEEEECSSEEEEECCTTCTTCCEEEEESCG
T ss_pred CCCCcEEEEEcCCCCCC--CCEEEEEeecCCCC----cceeEEEECCEEEEEEEECCCEEEEEECCCCCCCcEEEEEEec
Confidence 56667999999999998 79999999988764 26799999998887777889999999999976 9999998765
Q ss_pred CC--cccCcceeccccc
Q 004380 583 NR--LSCSEVREFEYRA 597 (758)
Q Consensus 583 n~--~acSEVreFEYr~ 597 (758)
.. .+.+ -..|+|..
T Consensus 88 ~~~~~~~~-~~~F~Y~~ 103 (496)
T 3kya_A 88 ENAVTTTA-STTFSYEK 103 (496)
T ss_dssp GGCEEEEC-SSCCEECC
T ss_pred CCceEEEe-cceEEEEE
Confidence 53 2233 36788863
No 122
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=97.64 E-value=3.8e-05 Score=90.83 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=62.6
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhh--hcccceEEeeCCceeeeE--EEecCceeeecCCCCCcceeEEEEeC
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQE--AENCKWSCMFGEIEVPAE--IVAGGVLRCHTSSQKVGRVPFYVTCS 582 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~--~~~~~~~cmFGd~eVpae--i~q~GvLrC~~PPh~pG~VpLyVtcs 582 (758)
.+.|+.|+|..|+..|||.|||.|.+|..+.. .......|.||+.+.... .+....|+|.+||..+|.+++.|+..
T Consensus 541 ~P~ItsI~P~~Gp~~GGT~vTI~G~nf~~~~~~~~~~~~~~V~igg~~C~~~~~~~s~t~I~C~tp~~~~~~~~v~V~v~ 620 (727)
T 2uzx_B 541 LPAIYKVFPNSAPLEGGTRLTICGWDFGFRRNNKFDLKKTRVLLGNESCTLTLSESTMNTLKCTVGPAMNKHFNMSIIIS 620 (727)
T ss_dssp CCEEEEEESSBCCSSCCCEEEEEEECCCEEETTEEESTTCEEEETTEECEECGGGCCSSEEEEECCC-----CCCEEEEE
T ss_pred CCEEeccCCCcccCCCCEEEEEEEecCCCCcccccCCcccEEEECCCccceeeeeccCCEEEEEeCCCCCCCccEEEEEe
Confidence 47999999999999999999999999986420 011457899999744332 35678899999997655555555544
Q ss_pred CCcccCcceecccccC
Q 004380 583 NRLSCSEVREFEYRAS 598 (758)
Q Consensus 583 n~~acSEVreFEYr~~ 598 (758)
++...+....|+|.++
T Consensus 621 ~~~~~~~~~~FtY~~P 636 (727)
T 2uzx_B 621 NGHGTTQYSTFSYVDP 636 (727)
T ss_dssp CSSCEEEEECCBCCCC
T ss_pred CCcceecccccccccc
Confidence 4332234567999743
No 123
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=97.48 E-value=1.6e-05 Score=94.14 Aligned_cols=74 Identities=18% Similarity=0.204 Sum_probs=1.3
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCCC-CCcceeEEEEeCCCc
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQ-KVGRVPFYVTCSNRL 585 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PPh-~pG~VpLyVtcsn~~ 585 (758)
.++|+.|+|.+|+..|||.|+|+|.+|..+ .+..|.||+.+.....+.+..|+|.+|+. .+|.|+|.|+.++..
T Consensus 635 ~P~I~sisP~~G~~sGGt~ITI~G~nf~~~-----~~~~V~ig~~~C~i~~~s~t~I~C~tP~~~~~g~~~V~V~idg~~ 709 (727)
T 2uzx_B 635 DPVITSISPKYGPMAGGTLLTLTGNYLNSG-----NSRHISIGGKTCTLKSVSNSILECYTPAQTISTEFAVKLKIDLAN 709 (727)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cceeEEECCCccccCCCEEEEEEEECCCCC-----CceEEEECCEEeeEEeecCCEEEEEcCCCCCCceEEEEEEECCEE
Confidence 578999999999999999999999999876 34779999987766778999999999997 689999999988754
No 124
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.40 E-value=0.00034 Score=77.40 Aligned_cols=88 Identities=20% Similarity=0.236 Sum_probs=69.4
Q ss_pred CCCceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCCCCC-cceeEEEEeC
Q 004380 504 QDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKV-GRVPFYVTCS 582 (758)
Q Consensus 504 q~q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PPh~p-G~VpLyVtcs 582 (758)
+.|...|++|+|.+|.. ||||+|.|++|... .....|+||+.++...-+....|.|++|+... |.|.|.|..+
T Consensus 16 ~~~p~~i~~~~P~~g~~--~~~~~i~G~nfg~~----~~~~~v~~~~~~a~v~~~~~~~i~~~vp~~~~~g~~~v~v~~~ 89 (433)
T 4hw6_A 16 PKEEIVVEKFLPTEGRK--GTRVVVYGRNFGND----VSKVKVTIGGYPAKVINVKGESLLCICPSKAYEGDVKVSVVGD 89 (433)
T ss_dssp TTSCCEEEEEESSEECT--TCEEEEEEECCCSC----GGGEEEEETTEEEEEEEECSSEEEEECCTTCTTCCEEEEEECT
T ss_pred CCCCCEEEEECCCCCCC--CCEEEEEeECCCCC----cceeEEEECCEEEEEEEeCCCEEEEEeCCCCCCCCEEEEEecC
Confidence 45666999999999987 99999999999764 36799999999888777899999999999855 9999988776
Q ss_pred CCc---ccCcceeccccc
Q 004380 583 NRL---SCSEVREFEYRA 597 (758)
Q Consensus 583 n~~---acSEVreFEYr~ 597 (758)
+.. .-.--..|+|..
T Consensus 90 ~~~~~~~~~~~~~F~y~~ 107 (433)
T 4hw6_A 90 DEAELKSGVCEAKFDYQY 107 (433)
T ss_dssp TSCEEEEEECSSCCEECC
T ss_pred CcceeeEEEeeeEEEEEe
Confidence 641 111135566653
No 125
>2yrp_A Nuclear factor of activated T-cells, cytoplasmic 4; beta-sandwich, immunoglobulin-like fold, TIG domain, IPT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.14 E-value=0.001 Score=61.20 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=64.5
Q ss_pred CCCceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCc--------eee----eEEEecCceeeecCC-C
Q 004380 504 QDQLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEI--------EVP----AEIVAGGVLRCHTSS-Q 570 (758)
Q Consensus 504 q~q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~--------eVp----aei~q~GvLrC~~PP-h 570 (758)
..-++.|.+.|-.-+++.||-||+|+|..|... -.|+|=+. |.- .++.+...|+|.+|| |
T Consensus 5 a~~~P~I~k~s~~s~~v~GG~Ev~Ll~~k~~kd-------~kV~F~E~~~dG~~~WE~~a~f~~d~~~q~aivf~tPpY~ 77 (114)
T 2yrp_A 5 SSGLPQVEAYSPSACSVRGGEELVLTGSNFLPD-------SKVVFIERGPDGKLQWEEEATVNRLQSNEVTLTLTVPEYS 77 (114)
T ss_dssp CCSCCEEEEEESSCEETTCCSEEEEEEESCCTT-------CEEEEECBCTTSCBCCCCBCCBCTTTCBTTEEEEECCCCS
T ss_pred CCCCCEEEEecCcccccCCCCEEEEEecccCCC-------CEEEEEEECCCCCcceEEeeEEChHHcccccEEEecCCCC
Confidence 455789999999999999999999999987632 23555221 222 344677899999999 2
Q ss_pred -----CCcceeEEEEeCCCcccCcceeccccc
Q 004380 571 -----KVGRVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 571 -----~pG~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
.|=.|-||| |.+...+|+...|+|..
T Consensus 78 ~~~I~~pV~V~~~l-~~~~rk~Se~~~FtY~P 108 (114)
T 2yrp_A 78 NKRVSRPVQVYFYV-SNGRRKRSPTQSFRFLP 108 (114)
T ss_dssp CCSCSSCEEEEEEE-ECSSSCBCCCEEEEEEC
T ss_pred CCccCCCeEEEEEE-CCCCCcccCCcCcEEec
Confidence 555677777 55545689999999986
No 126
>1ikn_C P50D, protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1
Probab=94.98 E-value=0.027 Score=52.29 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=59.0
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCC-chhhhcccceEEeeCCc-------ee-----eeEEEecCceeeecCC-C---
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLM-SQQEAENCKWSCMFGEI-------EV-----PAEIVAGGVLRCHTSS-Q--- 570 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~-~~~~~~~~~~~cmFGd~-------eV-----paei~q~GvLrC~~PP-h--- 570 (758)
..|.+.|=.-|++.||.||.++|..+. +. .-|.|=+. |. ++.+-....|+|.+|| |
T Consensus 4 l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~d-------ikV~F~e~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~ 76 (119)
T 1ikn_C 4 LKIVRMDRTAGCVTGGEEIYLLCDKVQKDD-------IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDVN 76 (119)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTS-------EEEEEEEECTTSCEEEEECCCCGGGEETTTEEEEECCCCSCTT
T ss_pred CEEEEeeCCccccCCCCEEEEEeccccCCC-------CEEEEEEeCCCCCceEEeEEeChhhccccceEEEECCCCCCCC
Confidence 479999999999999999999999765 22 22444221 22 2345567899999999 3
Q ss_pred --CCcceeEEEEeCCCcccCcceecccccC
Q 004380 571 --KVGRVPFYVTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 571 --~pG~VpLyVtcsn~~acSEVreFEYr~~ 598 (758)
.|=.|-|+|.-.....+|+...|+|...
T Consensus 77 I~~pV~V~i~L~r~sd~~~Sep~~FtY~P~ 106 (119)
T 1ikn_C 77 ITKPASVFVQLRRKSDLETSEPKPFLYYPE 106 (119)
T ss_dssp CSSCEEEEEEEEETTTCCBCCCEEEEEECC
T ss_pred cCCCEEEEEEEEcCCCCCccCCcccEeecC
Confidence 3444555555433445899999999874
No 127
>1my7_A NF-kappab P65 (RELA) subunit; immunoglobulin, IG, beta-sandwich, beta-sheet, homodimerdna- binding, transcription regulation, activator; 1.49A {Mus musculus} SCOP: b.1.18.1 PDB: 1my5_A 1bft_A
Probab=94.58 E-value=0.041 Score=50.65 Aligned_cols=89 Identities=15% Similarity=0.137 Sum_probs=60.2
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCCc-hhhh--cccceEEeeCCceeeeEEEecCceeeecCC-C-----CCcceeEE
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLMS-QQEA--ENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-Q-----KVGRVPFY 578 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~~-~~~~--~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h-----~pG~VpLy 578 (758)
..|.+.|=.-|++.||.||.++|..+.- .-.+ ..-.| -+||++. |+++.....|+|.+|| | .|=.|-++
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~VrF~e~~W-E~~g~f~-~~Dvh~Q~aIvfktPpY~~~~I~~pV~V~i~ 81 (114)
T 1my7_A 4 LKICRVNRRSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGW-EARGSFS-QADVHRQVAIVFRTPPYADPSLQAPVRVSMQ 81 (114)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEETTE-EEECBCC-GGGBCTTSEEEEECCCCSCTTCCSCEEEEEE
T ss_pred cEEEEecCCceecCCCcEEEEEecccccCCCEEEEEccCe-EEecccC-hhhcccceeEEEECCCCCCCccCCCEEEEEE
Confidence 4799999999999999999999997653 2110 00123 2334432 2456778899999999 3 33444555
Q ss_pred EEeCCCcccCcceecccccC
Q 004380 579 VTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 579 Vtcsn~~acSEVreFEYr~~ 598 (758)
|.-.....+|+...|+|...
T Consensus 82 L~r~sd~~~Sep~~FtY~P~ 101 (114)
T 1my7_A 82 LRRPSDRELSEPMEFQYLPD 101 (114)
T ss_dssp EEETTTTEECCCEEEEEECC
T ss_pred EEeCCCCCcCCCcccEEecC
Confidence 54433446899999999864
No 128
>1u36_A DNA-binding, nuclear factor NF-kappa-B P105 subunit; transcription factor, NF-KB, dimerization domain, intertwined folding; 1.89A {Mus musculus} SCOP: b.1.18.1 PDB: 1u3z_A 1u3y_A 3jv4_B 1bfs_A 1u3j_A 1u42_A 1u41_A 1nfi_B
Probab=94.31 E-value=0.063 Score=48.84 Aligned_cols=83 Identities=16% Similarity=0.115 Sum_probs=57.4
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCC-chhhhcccceEEeeCCc-------eee-----eEEEecCceeeecCC-C---
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLM-SQQEAENCKWSCMFGEI-------EVP-----AEIVAGGVLRCHTSS-Q--- 570 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~-~~~~~~~~~~~cmFGd~-------eVp-----aei~q~GvLrC~~PP-h--- 570 (758)
..|.+.|=.-|++.||.||.++|..+. +. .-|.|=+. |.- +.+-....|+|.+|| |
T Consensus 4 l~I~r~s~~s~~v~GG~Ev~Llc~kv~K~d-------ikV~F~E~~~~g~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~ 76 (106)
T 1u36_A 4 LKIVRMDRTAGCVTGGEEIWLLCDKVQKDD-------IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAICFKTPKYKDVN 76 (106)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTS-------CEEEEEECC----CEEEECBCCGGGEETTTEEEEECCCCSCTT
T ss_pred CEEEEeeCCccccCCCCEEEEEeccccCCC-------CEEEEEEeCCCCCceEEeeecCHHHcccceEEEEECCCCCCCc
Confidence 479999999999999999999999765 22 22444321 222 334457899999999 3
Q ss_pred --CCcceeEEEEeCCCcccCcceeccccc
Q 004380 571 --KVGRVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 571 --~pG~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
.|=.|-|+|.-.....+|+...|+|..
T Consensus 77 I~~pV~V~~~l~r~sd~~~Sep~~FtY~P 105 (106)
T 1u36_A 77 ITKPASVFVQLRRKSDLETSEPKPFLYYP 105 (106)
T ss_dssp CSSCEEEEEEEECTTTCCBCCCEEEEEEC
T ss_pred cCCCEEEEEEEEcCCCCCccCCcCcEEcC
Confidence 333444455443345689999999963
No 129
>1zk9_A Transcription factor RELB; NF-KB, transcription factors, intertwined dimer; 2.18A {Mus musculus} PDB: 1zka_A 3jv6_A 3jv4_A 3jss_A 3juz_A 3jv0_A
Probab=93.28 E-value=0.033 Score=50.91 Aligned_cols=88 Identities=13% Similarity=0.113 Sum_probs=58.6
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCCc-hhhhc--ccceEEeeCCceeeeEEEecCceeeecCC-C---CCcceeEEEE
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLMS-QQEAE--NCKWSCMFGEIEVPAEIVAGGVLRCHTSS-Q---KVGRVPFYVT 580 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~~-~~~~~--~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h---~pG~VpLyVt 580 (758)
..|.+.|=.-|++.||.||.++|..+.- .-.+- .--|- +||+.. ++++.....|+|.+|| | ..-.|.|.|.
T Consensus 13 L~I~r~s~~sg~v~GG~Ev~LLc~kv~K~Di~V~F~e~~WE-~~~~f~-~~Dvh~Q~aIvf~tPpY~~~~I~~pV~V~i~ 90 (110)
T 1zk9_A 13 LRICRINKESGPCTGGEELYLLCDKVQKEDISVVFSTASWE-GRADFS-QADVHRQIAIVFKTPPYEDLEISEPVTVNVF 90 (110)
T ss_dssp SCEEEESCSCCCTTCCCCCCEEESCCCTTSCCCEEEETTEE-EECCCC-GGGCCCCCCCCCCCCCCSCTTCSSCEEEEEC
T ss_pred CEEEEecCCccccCCCCEEEEEecccccCCcEEEEechhee-eccccC-cccccccceEEEECCCCCCcccCCCeEEEEE
Confidence 5899999999999999999999996654 21100 00232 234321 2456677899999999 3 3344444444
Q ss_pred e--CCCcccCcceeccccc
Q 004380 581 C--SNRLSCSEVREFEYRA 597 (758)
Q Consensus 581 c--sn~~acSEVreFEYr~ 597 (758)
. .....+|+...|+|..
T Consensus 91 L~r~sd~~~Sep~~FtY~P 109 (110)
T 1zk9_A 91 LQRLTDGVCSEPLPFTYLP 109 (110)
T ss_dssp CBCTTTCCBCCCEEEEECC
T ss_pred EEeCCCCCccCCcCcEEcC
Confidence 3 2445599999999964
No 130
>1oy3_C Transcription factor P65; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: b.1.18.1 PDB: 1k3z_A
Probab=92.83 E-value=0.16 Score=48.07 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=60.4
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCCc-hhhh--cccceEEeeCCceeeeEEEecCceeeecCC-C-----CCcceeEE
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLMS-QQEA--ENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-Q-----KVGRVPFY 578 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~~-~~~~--~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h-----~pG~VpLy 578 (758)
..|.++|=.-|++.||.||.++|..+.- .-++ ..-.| -.||++. ++++.....|+|.+|| | .|=.|-++
T Consensus 4 L~I~r~s~~sg~v~GG~Ev~LLceKv~K~Di~VrF~e~~W-E~~g~f~-~~dVh~Q~AIvfkTPpY~~~~I~~pV~V~iq 81 (136)
T 1oy3_C 4 LKICRVNRNSGSCLGGDEIFLLCDKVQKEDIEVYFTGPGW-EARGSFS-QADVHRQVAIVFRTPPYADPSLQAPVRVSMQ 81 (136)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESCCCTTSCEEEEEETTE-EEECBCC-GGGBCTTSEEEEECCCCSCTTCCSCEEEEEE
T ss_pred cEEEEecCCccccCCCcEEEEEccccccCCCEEEEEccCe-EEecccC-hhheecceEEEEECCCCCCccCCCCeEEEEE
Confidence 4799999999999999999999996643 2110 00013 2233332 2456677899999999 3 44455566
Q ss_pred EEeCCCcccCcceecccccC
Q 004380 579 VTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 579 Vtcsn~~acSEVreFEYr~~ 598 (758)
|.-.....+|+...|+|...
T Consensus 82 L~rpsd~~~Sep~~F~Y~P~ 101 (136)
T 1oy3_C 82 LRRPSDRELSEPMEFQYLPD 101 (136)
T ss_dssp EEETTTTEECCCEEEEEECC
T ss_pred EEeCCCCCccCCcceEEecC
Confidence 65534446899999999864
No 131
>3iag_C Recombining binding protein suppressor of hairless; protein-DNA complex, signaling, transcription, notch, activator, alternative splicing; HET: XYL; 2.00A {Mus musculus} PDB: 3brg_C* 3nbn_A 2f8x_C 3v79_C*
Probab=91.69 E-value=0.29 Score=53.68 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=55.2
Q ss_pred eEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCC-----------CCCcceeEEEEeCCCcccCccee
Q 004380 524 VKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-----------QKVGRVPFYVTCSNRLSCSEVRE 592 (758)
Q Consensus 524 tKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-----------h~pG~VpLyVtcsn~~acSEVre 592 (758)
.-|-|.|.+|... +.|.||++++.+.+-.+-.|.|..|+ ..|-.|||-+.-.++..-+--..
T Consensus 343 amlEl~G~nF~~~-------L~VWFG~v~aeT~yR~~e~l~c~vP~~~~~~~~w~~~~~~~~Vpi~LVR~DGviy~t~~t 415 (422)
T 3iag_C 343 AMLELTGQNFTPN-------LRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGVIYSTSLT 415 (422)
T ss_dssp CEEEEEEESCCTT-------EEEEETTEECCEEEEETTEEEEECCCGGGTSTTCSSCCSCEEEEEEEEETTSEEEEEEEE
T ss_pred eEEEEEccCCCCC-------ceEEECCCCceeEEeccceEEEeCCCHHHhccCccccCCceEEEEEEEecCCEEeeCCcc
Confidence 5688899999864 88999999999999999999999998 14567898888777776566677
Q ss_pred ccccc
Q 004380 593 FEYRA 597 (758)
Q Consensus 593 FEYr~ 597 (758)
|+|..
T Consensus 416 fty~p 420 (422)
T 3iag_C 416 FTYTP 420 (422)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88864
No 132
>2v2t_A RELB, transcription factor RELB; 4-diphosphocytidyl-2C-methyl-D-erythritol, aquifex aeolicus, nucleotide-binding, isoprene biosynthesis; 3.05A {Mus musculus} PDB: 3do7_A
Probab=90.15 E-value=0.33 Score=51.33 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=61.5
Q ss_pred CceEEEeecCCCcCCCCceEEEEEccCCC-chhhhcccceEEeeCCc--eeee-----EEEecCceeeecCC-C-----C
Q 004380 506 QLYSIIDFSPNWAYVSSEVKVLITGRFLM-SQQEAENCKWSCMFGEI--EVPA-----EIVAGGVLRCHTSS-Q-----K 571 (758)
Q Consensus 506 q~fsI~d~SP~wg~~~GgtKVlIlGsf~~-~~~~~~~~~~~cmFGd~--eVpa-----ei~q~GvLrC~~PP-h-----~ 571 (758)
+...|.++|=.-|++.||.||.++|..+. .. .-|.|=+. |.-+ .+.....|+|.+|| + .
T Consensus 189 ~eL~I~r~s~~sgsv~GG~Ev~LLc~kv~K~d-------ikV~F~e~~WE~~~~f~~~Dvh~Q~aIvf~tPpY~~~~I~~ 261 (288)
T 2v2t_A 189 SELRICRINKESGPCTGGEELYLLCDKVQKED-------ISVVFSTASWEGRADFSQADVHRQIAIVFKTPPYEDLEISE 261 (288)
T ss_dssp SCCCBCCCSCSCCCSSCCCEEEEEBSSCCTTS-------EEEEEECSSCEEECCCCGGGEETTTEEEEECCCCTTCCCSS
T ss_pred CCCeEEEeeCCccccCCCCEEEEEecccccCC-------CEEEEEecceEEeeEeChhhccceeEEEEECCCCCCCCcCC
Confidence 34589999999999999999999999765 22 33544432 3333 34556789999999 2 4
Q ss_pred CcceeEEEEeCCCcccCcceeccccc
Q 004380 572 VGRVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 572 pG~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
|=.|-|++.-.....||+...|+|..
T Consensus 262 pV~V~iqL~r~sd~~~Sep~~FtY~P 287 (288)
T 2v2t_A 262 PVTVNVFLQRLTDGVCSEPLPFTYLP 287 (288)
T ss_dssp CCBCCEEEEETTTCCBCCCBCCBCCC
T ss_pred CeEEEEEEEeCCCCCcCCCcCcEEcC
Confidence 55666777664444689999999964
No 133
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=89.28 E-value=0.53 Score=51.96 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=56.7
Q ss_pred CceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCC-ceee-eEEE--ecCceeeecCCC-C--CcceeEE
Q 004380 506 QLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGE-IEVP-AEIV--AGGVLRCHTSSQ-K--VGRVPFY 578 (758)
Q Consensus 506 q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd-~eVp-aei~--q~GvLrC~~PPh-~--pG~VpLy 578 (758)
..++|+.|+|+.+ ..|..|+|.|.+|... -.|.||. +++. ...+ ....|+-.+|.- . +|.|.
T Consensus 112 PaPtITSISpe~~--~aGd~VTItGsNF~~i-------skV~FgG~veaT~~~svs~S~T~ItVtVPaGA~~~sG~It-- 180 (439)
T 3orj_A 112 AAPSITKISNCMP--NVGEPIIVYGSGLTEI-------AKVVFPGNVVVTEGIISDLDGEYFMVDMPAGVSEEGGSIF-- 180 (439)
T ss_dssp SCCEEEEESCSSC--CTTCEEEEEEECCTTC-------CEEEETTTEEECSSCEECTTSSEEEEECCTTCCTTCBCCE--
T ss_pred CCCEEEEeCCCCC--CCCCEEEEEccCCCce-------eEEEECCCeeEEEEEEecCCCCEEEEEecCCCcCCCceEE--
Confidence 3579999999876 5789999999999987 4599985 5554 2334 678999999995 4 57665
Q ss_pred EEeCCCcccCcceecccccC
Q 004380 579 VTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 579 Vtcsn~~acSEVreFEYr~~ 598 (758)
|...++.+.+. |-|++.
T Consensus 181 VvT~~GtA~S~---~~f~dk 197 (439)
T 3orj_A 181 VEGSNGGAYSP---AYFNYK 197 (439)
T ss_dssp EEETTEEEECC---SCBTCG
T ss_pred EEeCCCcEeee---EEEccC
Confidence 44555554333 555543
No 134
>1p7h_L Nuclear factor of activated T-cells, cytoplasmic 2; DNA binding protein, transcription regulation, activator, transcription/DNA complex; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 2o93_L 1a02_N* 1pzu_B 1owr_M 2as5_N 1s9k_C 3qrf_N 1nfa_A 1a66_A*
Probab=88.54 E-value=0.4 Score=50.61 Aligned_cols=88 Identities=17% Similarity=0.271 Sum_probs=60.5
Q ss_pred CceEEEeecCCCcCCCCceEEEEEccCCCchhhh--------cccceEEeeCCceeeeEEEecCceeeecCC-C-----C
Q 004380 506 QLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEA--------ENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-Q-----K 571 (758)
Q Consensus 506 q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~--------~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h-----~ 571 (758)
-+..|.+++-.-|++.||.||.++|..+...-++ ...-| -+||++. .++.....|+|.+|| + .
T Consensus 184 ~~l~I~r~s~~sg~v~GG~Ei~Llc~kv~KDikVrF~E~~~dg~~~W-e~~g~f~--~dvh~Q~AIvfkTPpY~~~~I~~ 260 (286)
T 1p7h_L 184 ELPMVERQDTDSCLVYGGQQMILTGQNFTSESKVVFTEKTTDGQQIW-EMEATVD--KDKSQPNMLFVEIPEYRNKHIRT 260 (286)
T ss_dssp CCCEEEEESCSEEETTCCCEEEEEEESCCSSCEEEEEEECSSSCEEE-EEEECBC--TTTCBTTEEEEECCCCSCTTCSS
T ss_pred CCCeEEEeccccccccCCcEEEEEecccCCCcEEEEEEECCCCCcce-EEeEEeC--ccccccceEEEECCCCccCccCC
Confidence 3579999999999999999999999977421110 00113 2334332 245567789999999 2 4
Q ss_pred CcceeEEEEeCCCcccCcceeccccc
Q 004380 572 VGRVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 572 pG~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
|=.|-|++.-. ...+||...|+|..
T Consensus 261 pV~V~~~l~r~-d~~~Sep~~FtY~P 285 (286)
T 1p7h_L 261 PVKVNFYVING-KRKRSQPQHFTYHP 285 (286)
T ss_dssp CEEEEEEEEET-TTEECCCEEEEEEC
T ss_pred CeEEEEEEeCC-CCCcCCCcCceEec
Confidence 55566666555 34699999999963
No 135
>1nfk_A Protein (nuclear factor kappa-B (NF-KB)); NF-KB P50, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 2v2t_B 1ooa_A 1lei_B* 1le9_B 1le5_B* 2i9t_B 1vkx_B* 3gut_B 2o61_B
Probab=88.11 E-value=0.5 Score=50.67 Aligned_cols=85 Identities=15% Similarity=0.105 Sum_probs=59.7
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCC-chhhhcccceEEeeCCc-------eee-----eEEEecCceeeecCC-C--
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLM-SQQEAENCKWSCMFGEI-------EVP-----AEIVAGGVLRCHTSS-Q-- 570 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~-~~~~~~~~~~~cmFGd~-------eVp-----aei~q~GvLrC~~PP-h-- 570 (758)
...|.+++-.-|++.||.||.|+|..+. +. .-|.|=+. |.- +.+-....|+|.+|| +
T Consensus 209 eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~D-------i~VrF~E~~~~g~~WE~~g~f~~~Dvh~Q~AIvfkTPpY~~~ 281 (325)
T 1nfk_A 209 NLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD-------IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDV 281 (325)
T ss_dssp CCCEEEESCSCEESSCCCEEEEEESCCCTTT-------EEEEEEECCCSSCCEEEECBCCGGGBCTTSEEEEECCCTTSS
T ss_pred CCeEEEecCCccccCCCCEEEEEecccccCC-------CEEEEEEeCCCCCeeEEeeeeCHHHccceeEEEEECCCCCCC
Confidence 4589999999999999999999999765 22 22444221 222 333456789999999 3
Q ss_pred ---CCcceeEEEEeCCCcccCcceecccccC
Q 004380 571 ---KVGRVPFYVTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 571 ---~pG~VpLyVtcsn~~acSEVreFEYr~~ 598 (758)
.|=.|-|+|.-.....||+...|+|...
T Consensus 282 ~I~~pV~V~iqL~r~sd~~~Sep~~FtY~P~ 312 (325)
T 1nfk_A 282 NITKPASVFVQLRRKSDLETSEPKPFLYYPE 312 (325)
T ss_dssp CCCSSEEEEEEEEETTTCCBCCCEEEEEECC
T ss_pred CcCCCeEEEEEEEcCCCCCccCCccceeecC
Confidence 4445555665444446999999999864
No 136
>1svc_P Protein (nuclear factor kappa-B (NF-KB)); DNA-binding, transcription regulation, activator, nuclear protein, phosphorylation, repeat, DNA; HET: DNA; 2.60A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=88.00 E-value=0.54 Score=51.08 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=59.8
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCC-chhhhcccceEEeeCCc-------ee-----eeEEEecCceeeecCC-C--
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLM-SQQEAENCKWSCMFGEI-------EV-----PAEIVAGGVLRCHTSS-Q-- 570 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~-~~~~~~~~~~~cmFGd~-------eV-----paei~q~GvLrC~~PP-h-- 570 (758)
...|.+++-.-|++.||.||.|+|..+. +. .-|.|=+. |. ++.+-....|+|.+|| +
T Consensus 249 eL~I~R~s~~sgsv~GG~Ev~LLc~Kv~K~D-------ikVrF~E~~~~g~~WE~~g~f~~~DVH~Q~AIvfkTPpY~~~ 321 (365)
T 1svc_P 249 NLKIVRMDRTAGCVTGGEEIYLLCDKVQKDD-------IQIRFYEEEENGGVWEGFGDFSPTDVHRQFAIVFKTPKYKDI 321 (365)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCGGG-------CEEEEEEEETTTEEEEEECBCCGGGEETTTEEEEECCCCSCS
T ss_pred CCeEEEecCCccccCCCCEEEEEecccccCC-------CEEEEEEeCCCCCeeEEeeeeChHHhcceeeEEEECCCCCCC
Confidence 4589999999999999999999999765 22 23444332 22 2344556789999999 2
Q ss_pred ---CCcceeEEEEeCCCcccCcceecccccC
Q 004380 571 ---KVGRVPFYVTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 571 ---~pG~VpLyVtcsn~~acSEVreFEYr~~ 598 (758)
.|=.|-|+|.-.....||+...|+|...
T Consensus 322 ~I~~pV~V~iqL~R~sd~~~Sep~~FtY~P~ 352 (365)
T 1svc_P 322 NITKPASVFVQLRRKSDLETSEPKPFLYYPE 352 (365)
T ss_dssp CCSSCEEEEEEEECTTTCCBCCCEEEEEECC
T ss_pred CcCCCeEEEEEEEcCCCCCccCCccceeecC
Confidence 3444555554433346999999999864
No 137
>1a3q_A Protein (nuclear factor kappa-B P52); transcription factor, immune response, DNA-protein complex, transcription/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3 PDB: 3do7_B 3jv6_B 3jv5_A
Probab=87.34 E-value=0.82 Score=48.22 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=59.0
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCC-----ceeee-----EEEecCceeeecCC-C-----
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGE-----IEVPA-----EIVAGGVLRCHTSS-Q----- 570 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd-----~eVpa-----ei~q~GvLrC~~PP-h----- 570 (758)
-..|.+++=.-|++.||.||.++|..+.-. ..-|.|=+ -|.-+ .+-....|+|.+|| +
T Consensus 185 eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~------Di~V~F~E~~~~gWE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~ 258 (285)
T 1a3q_A 185 NLKISRMDKTAGSVRGGDEVYLLCDKVQKD------DIEVRFYEDDENGWQAFGDFSPTDVHKQYAIVFRTPPYHKMKIE 258 (285)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESSCCTT------TEEEEEEECSSSCEEEECBCCGGGEETTTEEEEECCCCSCTTCS
T ss_pred CCeEEEecCCccccCCCCEEEEEeccccCC------CCEEEEEecCCCCCEEeeEeCHHHccceeeEEEECCCCCCCCCC
Confidence 348999999999999999999999976531 12344433 23333 33447789999999 2
Q ss_pred CCcceeEEEEeCCCcccCcceecccc
Q 004380 571 KVGRVPFYVTCSNRLSCSEVREFEYR 596 (758)
Q Consensus 571 ~pG~VpLyVtcsn~~acSEVreFEYr 596 (758)
.|=.|-|++.-.....+|+...|+|.
T Consensus 259 ~pV~V~iqL~r~sd~~~Sep~~FtY~ 284 (285)
T 1a3q_A 259 RPVTVFLQLKRKRGGDVSDSKQFTYY 284 (285)
T ss_dssp SCEEEEEEEEETTTCCBCCCEEEEEE
T ss_pred CCeEEEEEEEeCCCCCccCCCCceeC
Confidence 44455556655344558999999995
No 138
>1imh_C NF-AT5, tonebp, nuclear factor of activated T cells 5; beta barrel, protein-DNA complex, double helix, DNA encirclement, transcription/DNA complex; 2.86A {Homo sapiens} SCOP: b.1.18.1 b.2.5.3
Probab=87.32 E-value=0.89 Score=47.86 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=59.2
Q ss_pred CceEEEeecCCCcCCCCceEEEEEccCCCchhhh-------cccceEEeeCCceeeeEEEecCceeeecCC-C-----CC
Q 004380 506 QLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEA-------ENCKWSCMFGEIEVPAEIVAGGVLRCHTSS-Q-----KV 572 (758)
Q Consensus 506 q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~-------~~~~~~cmFGd~eVpaei~q~GvLrC~~PP-h-----~p 572 (758)
-...|.++|-.-|++.||.||.|+|..+...-.+ ....|- +||++. ++ .+....|+|.+|| + .|
T Consensus 180 ~~l~I~r~s~~sg~v~GG~Ev~Llc~kv~KdikVrF~E~~~d~~~WE-~~~~f~-~~-dvhQ~aIvf~tPpY~~~~I~~p 256 (281)
T 1imh_C 180 GVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWK-SEAEID-ME-LFHQNHLIVKVPPYHDQHITLP 256 (281)
T ss_dssp CCCEEEEESCCEEETTCCCEEEEEEECCCTTCEEEEESSSCTTCSCE-EEECBC-GG-GCCSSEEEEECCCCSCTTCSSC
T ss_pred CCCeEEEEecCccccCCCcEEEEEeeccCCCcEEEEEEeCCCCCceE-EeEEeC-hh-hcccceEEEECCCCccCccCCC
Confidence 3579999999999999999999999876532110 001232 234432 11 1347899999999 2 44
Q ss_pred cceeEEEEeCCCcccCcceeccccc
Q 004380 573 GRVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 573 G~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
=.|-|+|.- +...+|+...|+|..
T Consensus 257 V~V~iqL~r-sd~~~S~p~~FtY~P 280 (281)
T 1imh_C 257 VSVGIYVVT-NAGRSHDVQPFTYTP 280 (281)
T ss_dssp EEEEEEEEE-TTEECCSCEEEEEEC
T ss_pred eEEEEEEEe-CCCCccCCcCceecC
Confidence 556666654 445589999999963
No 139
>1ikn_A P65, protein (NF-kappa-B P65 subunit); transcription factor, IKB/NFKB complex; 2.30A {Mus musculus} SCOP: b.1.18.1 b.2.5.3 PDB: 1nfi_A 2ram_A* 1ram_A* 2i9t_A 1lei_A* 1le9_A 1le5_A* 1vkx_A* 3gut_A
Probab=87.26 E-value=0.65 Score=49.04 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCC-chhhhcccceEEeeCCc--eeeeE-----EEecCceeeecCC-C-----CC
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLM-SQQEAENCKWSCMFGEI--EVPAE-----IVAGGVLRCHTSS-Q-----KV 572 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~-~~~~~~~~~~~cmFGd~--eVpae-----i~q~GvLrC~~PP-h-----~p 572 (758)
...|.+++=.-|++.||.||.|+|..+. +. .-|.|=+. |.-++ +-....|+|.+|| + .|
T Consensus 175 eL~I~r~s~~sg~v~GG~Ev~Llc~kv~K~d-------i~V~F~e~~WE~~~~f~~~dvh~Q~aIvf~tPpY~~~~I~~p 247 (286)
T 1ikn_A 175 ELKICRVNRNSGSCLGGDEIFLLCDKVQKED-------IEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAP 247 (286)
T ss_dssp CCCEEEESCSEEETTCCCEEEEEESCCCTTS-------CEEEEEETTEEEECBCCGGGBCTTSEEEEECCCCSCTTCSSC
T ss_pred CCeEEEecCCccccCCCCEEEEEecccccCC-------CEEEEeccceEEeeecCHHHhccceeEEEECCCCCCCCcCCC
Confidence 4589999999999999999999999774 22 12333221 33333 3346789999999 3 33
Q ss_pred cceeEEEEeCCCcccCcceecccccC
Q 004380 573 GRVPFYVTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 573 G~VpLyVtcsn~~acSEVreFEYr~~ 598 (758)
=.|-|+|.-.....+|+...|+|...
T Consensus 248 V~V~i~L~r~sd~~~Sep~~FtY~P~ 273 (286)
T 1ikn_A 248 VRVSMQLRRPSDRELSEPMEFQYLPD 273 (286)
T ss_dssp EEEEEEEECTTTCCBCCCEEEEEECC
T ss_pred EEEEEEEEeCCCCCcCCCcCcEEecC
Confidence 34444554433456899999999864
No 140
>2o61_A Transcription factor P65/interferon regulatory FA 7/interferon regulatory factor...; protein-DNA complex, transcription-DNA complex; 2.80A {Homo sapiens}
Probab=87.21 E-value=0.55 Score=53.50 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=59.0
Q ss_pred eEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCc--ee-----eeEEEecCceeeecCC-C-----CCcc
Q 004380 508 YSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEI--EV-----PAEIVAGGVLRCHTSS-Q-----KVGR 574 (758)
Q Consensus 508 fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~--eV-----paei~q~GvLrC~~PP-h-----~pG~ 574 (758)
..|.++|-.-|++.||.||.|+|..+.-. ..-|.|=+. |. ++.+.....|+|.+|| + .|=.
T Consensus 177 L~I~r~s~~sgsv~GG~Ev~LLc~kv~K~------DikVrF~e~~WE~~a~f~~~Dvh~Q~AIvfkTPpY~~~~I~~pV~ 250 (540)
T 2o61_A 177 LKICRVNRNSGSCLGGDEIFLLCDKVQKE------DIEVYFTGPGWEARGSFSQADVHRQVAIVFRTPPYADPSLQAPVR 250 (540)
T ss_dssp CCEEEESCSEEETTCCCEEEEEESSCBTT------BCEEEEEETTEEEECBCCGGGEETTTEEEEECCCCSSSCCSSCEE
T ss_pred CeEEEecCCccccCCCCeEEEEecccccC------CcEEEEecccceeccccChhhhcceeeEEEeCCCCCCCCCCCCeE
Confidence 47999999999999999999999976531 122333222 22 2455667889999999 2 3334
Q ss_pred eeEEEEeCCCcccCcceecccccC
Q 004380 575 VPFYVTCSNRLSCSEVREFEYRAS 598 (758)
Q Consensus 575 VpLyVtcsn~~acSEVreFEYr~~ 598 (758)
|-|+|.-.....+|+...|+|...
T Consensus 251 V~iqL~r~sd~~~Sep~~FtY~P~ 274 (540)
T 2o61_A 251 VSMQLRRPSDRELSEPMEFQYLPD 274 (540)
T ss_dssp EEEEEECGGGCCBCCCEEEEEECC
T ss_pred EEEEEEeCCCCCcCCCcCcEEecC
Confidence 445554323455899999999864
No 141
>1gji_A C-REL protein, C-REL proto-oncogene protein; NF-KB/DNA complex, transcription factor, C-REL homodimer, transcription/DNA complex; 2.85A {Gallus gallus} SCOP: b.1.18.1 b.2.5.3
Probab=85.02 E-value=0.97 Score=47.45 Aligned_cols=86 Identities=15% Similarity=0.099 Sum_probs=58.7
Q ss_pred CceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCc--ee-----eeEEEecCceeeecCC-C----CCc
Q 004380 506 QLYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEI--EV-----PAEIVAGGVLRCHTSS-Q----KVG 573 (758)
Q Consensus 506 q~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~--eV-----paei~q~GvLrC~~PP-h----~pG 573 (758)
+...|.+++=.-|++.||.||.++|..+.-. + .-|.|=+. |. ++.+.....|+|.+|| + .|=
T Consensus 177 ~eL~I~r~s~~sg~v~GG~Ev~LLc~kv~K~-d-----i~VrF~e~~We~~~~f~~~Dvh~Q~AIvf~TPpY~~~I~~pV 250 (275)
T 1gji_A 177 AELRICRVNKNCGSVKGGDEIFILCDKVQKD-D-----IEVRFVLDNWEAKGSFSQADVHRQVAIVFRTPPFLRDITEPI 250 (275)
T ss_dssp SCCCEEEESCSEEETTCCCEEEEEESCCCGG-G-----CEEEEEETTEEEECBCCGGGEETTTEEEEECCCCSSCCSSCE
T ss_pred CCCEEEEeeCCccccCCCCEEEEEecccccC-C-----CEEEEEccceeeccccChhhhcceeeEEEeCCCCCcCCCCCE
Confidence 3457999999999999999999999976531 1 22333221 22 2445667889999999 3 333
Q ss_pred ceeEEEEeCCCcccCcceeccccc
Q 004380 574 RVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 574 ~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
.|-+++.-.....+||...|+|..
T Consensus 251 ~V~iqL~r~sd~~~Sep~~FtY~P 274 (275)
T 1gji_A 251 TVKMQLRRPSDQEVSEPMDFRYLP 274 (275)
T ss_dssp EEEEEEEEGGGTEECCCEEEEEEC
T ss_pred EEEEEEEcCCCCCccCCcCcEEcC
Confidence 444555443344589999999964
No 142
>3brd_A LIN-12 and GLP-1 phenotype protein 1, isoform A; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans} SCOP: b.1.18.1 b.2.5.8 b.42.7.1 PDB: 2fo1_A 1ttu_A* 3brf_A*
Probab=74.93 E-value=5.5 Score=44.50 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=58.1
Q ss_pred EEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCC----CC-------------
Q 004380 509 SIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSS----QK------------- 571 (758)
Q Consensus 509 sI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PP----h~------------- 571 (758)
=|.+..|--|- ++..-+-|.|.+|... +.|.||++++-+.+-.+-.|.|.+|+ +.
T Consensus 377 P~V~~~~~~g~-g~~~mlel~G~nF~~~-------l~VWfG~~~aeT~~r~~e~l~c~vP~~s~~~~~~~~w~~~~~~~~ 448 (477)
T 3brd_A 377 PVVGSLEVDGH-GEASRVELHGRDFKPN-------LKVWFGATPVETTFRSEESLHCSIPPVSQVRNEQTHWMFTNRTTG 448 (477)
T ss_dssp CEEEEEEEECS-GGGCEEEEEEECCCTT-------EEEEETTEEECEEEEETTEEEEECCCHHHHSCTTTHHHHBCTTTC
T ss_pred CeeeEEeecCC-CceeEEEEEcccCCCC-------CeEEECCccceeeEEccceeeccCCCHHHhCccccccccccccCC
Confidence 35555554331 1135677889988864 77999999998888888889999998 33
Q ss_pred CcceeEEEEeCCCcccCcceeccccc
Q 004380 572 VGRVPFYVTCSNRLSCSEVREFEYRA 597 (758)
Q Consensus 572 pG~VpLyVtcsn~~acSEVreFEYr~ 597 (758)
|=.|||-+.-.++..-.--..|+|..
T Consensus 449 ~~~vPl~LVr~dGviy~t~~tf~y~p 474 (477)
T 3brd_A 449 DVEVPISLVRDDGVVYSSGLTFSYKS 474 (477)
T ss_dssp CBEEEEEEEETTSEEEEEEEEEETTC
T ss_pred ceEeeEEEEecCCEEEecCceEEecc
Confidence 33489977777776556667788764
No 143
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.12 E-value=6.4 Score=36.84 Aligned_cols=29 Identities=24% Similarity=0.653 Sum_probs=21.4
Q ss_pred EEeeccccCcccceeeeecccccccceEEEe
Q 004380 101 CYYAHGEENENFQRRSYWMLEEELSHIVLVH 131 (758)
Q Consensus 101 ~~yah~~~~~~f~rr~yw~l~~~~~~ivlvh 131 (758)
.|-+|--..-+-+||-||.||.. .|.|.+
T Consensus 12 GWmVH~t~~d~~rKRHYWrLD~K--~Itlf~ 40 (129)
T 2d9z_A 12 GWMVHYTSRDNLRKRHYWRLDSK--CLTLFQ 40 (129)
T ss_dssp EEEEEEESSCCCCEEEEEEEESS--CEEEES
T ss_pred ceEEEEccCCccccceeeEecCC--eEEEEe
Confidence 56667555556699999999987 577754
No 144
>3orj_A Sugar-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 2.16A {Bacteroides ovatus}
Probab=39.42 E-value=19 Score=39.88 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=51.1
Q ss_pred CCCCceEEEEEccCCCchhhhcccceEEeeCCceee--eEEEecCceeeecCCCC-Cc------ceeEEEEeCCCcccCc
Q 004380 519 YVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVP--AEIVAGGVLRCHTSSQK-VG------RVPFYVTCSNRLSCSE 589 (758)
Q Consensus 519 ~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVp--aei~q~GvLrC~~PPh~-pG------~VpLyVtcsn~~acSE 589 (758)
...-|..|+|.|..|.+. -.++||++++. ..++.+..|+-.+|... +| ...|+|.-+++..
T Consensus 34 ~a~pGd~ItItGsNL~~v-------tkV~FNdvea~fnstyiTdtsI~VtIPs~aP~G~vd~~VtnkI~VvTdgGt~--- 103 (439)
T 3orj_A 34 FARLGQLIRIEGEGFNGL-------KKVYINGYNCYFNPVFVSNKSFLVSVNSKVPTTEADENVRNTIRLVKDGGEY--- 103 (439)
T ss_dssp EEETTCEEEEEEECCTTC-------CEEEETTEECCBCGGGCCSSEEEEECCTTCCSTTSCTTTTTEEEEEETTEEE---
T ss_pred cccCCCEEEEEeeCCCCe-------eEEEECCEEeeeccccccCCEEEEEcCCCCCCccccccccceEEEEECCCEE---
Confidence 456799999999999976 36999999883 56789999999999864 45 4467777766532
Q ss_pred ceeccccc
Q 004380 590 VREFEYRA 597 (758)
Q Consensus 590 VreFEYr~ 597 (758)
...|.+..
T Consensus 104 ty~FtVla 111 (439)
T 3orj_A 104 VYDFQIRA 111 (439)
T ss_dssp EEECEEEC
T ss_pred eeeeEEec
Confidence 23565543
No 145
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=28.55 E-value=1.2e+02 Score=35.67 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCceEEEeecCCCcCCC-CceEEEEEccCCCchhhhcccceEEeeCCc-eeeeEEEecCceeeecCCC------CCc---
Q 004380 505 DQLYSIIDFSPNWAYVS-SEVKVLITGRFLMSQQEAENCKWSCMFGEI-EVPAEIVAGGVLRCHTSSQ------KVG--- 573 (758)
Q Consensus 505 ~q~fsI~d~SP~wg~~~-GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~-eVpaei~q~GvLrC~~PPh------~pG--- 573 (758)
+|=..|+ +.|.--..+ ..+.|++....+..- . ..|.|.||+. +.+|.+ ..+.+.|..|+- .+|
T Consensus 526 ~qC~~i~-~~P~~~s~~~~~~~v~l~v~~lP~l---~-~~~~C~fg~~~~~~a~~-~~~~v~C~sP~~~~~p~~p~g~d~ 599 (681)
T 3oky_A 526 SQCMSLE-VHPNSISVSDHSRLLSLVVNDAPNL---S-EGIACAFGNLTEVEGQV-SGSQVICISPGPKDVPVIPLDQDW 599 (681)
T ss_dssp GGCCEEE-EESSEEETTSCSCEEEEEEETCCCC---T-TCEEEEETTTEEEECEE-ETTEEEEECCCTTTSCCCC--CCE
T ss_pred Cccceee-ecCccccccccccEEEEeccCCCCC---C-CCCEEEcCCccccccee-cCCeeEeCCCCHHhCCCCCCCceE
Confidence 4557886 888866654 467888877776432 1 2499999996 777754 777889987752 334
Q ss_pred -ceeEEEEeC
Q 004380 574 -RVPFYVTCS 582 (758)
Q Consensus 574 -~VpLyVtcs 582 (758)
.|+|+|...
T Consensus 600 ~~v~l~l~~~ 609 (681)
T 3oky_A 600 FGLELQLRSK 609 (681)
T ss_dssp EEEEEEEEET
T ss_pred EEEEEEEEec
Confidence 256777764
No 146
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=27.27 E-value=17 Score=30.96 Aligned_cols=9 Identities=56% Similarity=1.121 Sum_probs=7.7
Q ss_pred cccCcccee
Q 004380 69 RKDGHNWRK 77 (758)
Q Consensus 69 rkDg~~w~k 77 (758)
-.|||.|||
T Consensus 14 ~~DGy~WRK 22 (76)
T 2ayd_A 14 VNDGYRWRK 22 (76)
T ss_dssp CCCSSCEEE
T ss_pred CCCCchhhh
Confidence 459999998
No 147
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=26.22 E-value=17 Score=31.18 Aligned_cols=10 Identities=50% Similarity=0.923 Sum_probs=8.1
Q ss_pred cccCccceec
Q 004380 69 RKDGHNWRKK 78 (758)
Q Consensus 69 rkDg~~w~kk 78 (758)
-.|||.|||=
T Consensus 17 ~dDGy~WRKY 26 (78)
T 1wj2_A 17 LDDGYRWRKY 26 (78)
T ss_dssp CCSSSCBCCC
T ss_pred CCCCchhhhC
Confidence 4699999874
No 148
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=23.70 E-value=59 Score=30.24 Aligned_cols=30 Identities=23% Similarity=0.584 Sum_probs=23.1
Q ss_pred EEEeeccccCcccceeeeecccccccceEEEe
Q 004380 100 HCYYAHGEENENFQRRSYWMLEEELSHIVLVH 131 (758)
Q Consensus 100 ~~~yah~~~~~~f~rr~yw~l~~~~~~ivlvh 131 (758)
-.|-+|--..-.=+||-||.||.. .|.|.+
T Consensus 11 eGW~VH~t~~d~~rKRHYWrLD~K--~Itlf~ 40 (125)
T 2coa_A 11 EGWVVHYSNKDTLRKRHYWRLDCK--CITLFQ 40 (125)
T ss_dssp EEEEEECCSSSCCCEEEEEEECSS--EEEEES
T ss_pred cceEEEEccCCccccceeeEecCC--eEEEEe
Confidence 367788777677789999999987 577643
No 149
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL ABD; 1.70A {Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Probab=20.69 E-value=1.9e+02 Score=33.43 Aligned_cols=66 Identities=18% Similarity=0.167 Sum_probs=50.1
Q ss_pred ceEEEeecCCCcCCCCceEEEEEccCCCchhhhcccceEEeeCCceeeeEEEecCceeeecCCCCCcceeEEEE
Q 004380 507 LYSIIDFSPNWAYVSSEVKVLITGRFLMSQQEAENCKWSCMFGEIEVPAEIVAGGVLRCHTSSQKVGRVPFYVT 580 (758)
Q Consensus 507 ~fsI~d~SP~wg~~~GgtKVlIlGsf~~~~~~~~~~~~~cmFGd~eVpaei~q~GvLrC~~PPh~pG~VpLyVt 580 (758)
.+.|..+-|.-| .-|..|+|.|..|.... =.+.||..+....-|.+|.+.-.+|...+|.+.+.|+
T Consensus 498 ~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~~~v~ 563 (686)
T 1qho_A 498 APQIGSVAPNMG--IPGNVVTIDGKGFGTTQ------GTVTFGGVTATVKSWTSNRIEVYVPNMAAGLTDVKVT 563 (686)
T ss_dssp SCEEEEEESSEE--CTTCEEEEEEECCCSSC------CEEEETTEECCEEEECSSEEEEECCSCCCEEEEEEEE
T ss_pred CCcccccccccc--CCCCEEEEEeecCCCcc------eEEEEecceeeEEEcCCCcEEEecCCCCCCceEEEEe
Confidence 456666666432 23556899998776532 1499999887788899999988899888999999998
Done!