Query 004383
Match_columns 757
No_of_seqs 274 out of 405
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 22:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08875 START_ArGLABRA2_like C 100.0 4.2E-77 9E-82 608.8 19.9 211 69-282 1-229 (229)
2 PF08670 MEKHLA: MEKHLA domain 100.0 1.6E-59 3.5E-64 452.0 17.4 148 608-757 1-148 (148)
3 PF01852 START: START domain; 99.8 1.5E-19 3.2E-24 179.2 17.2 200 74-280 1-202 (206)
4 smart00234 START in StAR and p 99.8 3.3E-18 7E-23 170.2 21.3 198 75-282 2-205 (206)
5 cd00177 START Lipid-binding ST 99.5 2.7E-12 5.9E-17 124.3 17.6 184 78-279 2-189 (193)
6 cd08871 START_STARD10-like Lip 99.3 2.4E-10 5.2E-15 116.7 19.0 192 76-286 8-205 (222)
7 cd08868 START_STARD1_3_like Ch 99.3 2.9E-10 6.2E-15 115.1 19.2 194 72-284 6-208 (208)
8 cd08867 START_STARD4_5_6-like 99.2 9.5E-10 2.1E-14 111.1 19.7 190 73-279 4-202 (206)
9 cd08904 START_STARD6-like Lipi 99.1 1.5E-09 3.3E-14 110.8 17.3 168 73-253 4-178 (204)
10 cd08903 START_STARD5-like Lipi 99.1 7.7E-09 1.7E-13 105.4 19.4 188 73-279 4-202 (208)
11 cd08905 START_STARD1-like Chol 99.1 4.7E-09 1E-13 107.0 16.8 193 72-282 6-207 (209)
12 cd08909 START_STARD13-like C-t 98.9 3.2E-08 7E-13 101.3 15.8 130 117-257 50-181 (205)
13 cd08869 START_RhoGAP C-termina 98.9 3.7E-08 8E-13 99.6 15.9 167 76-257 3-173 (197)
14 PLN00188 enhanced disease resi 98.9 2.2E-08 4.8E-13 116.7 15.1 152 118-279 226-387 (719)
15 cd08906 START_STARD3-like Chol 98.8 2.5E-07 5.4E-12 94.7 18.3 190 72-279 6-203 (209)
16 cd08902 START_STARD4-like Lipi 98.6 1.4E-06 2.9E-11 89.1 16.7 176 73-267 4-186 (202)
17 cd08908 START_STARD12-like C-t 98.6 8.1E-07 1.7E-11 91.1 15.1 170 72-257 7-180 (204)
18 cd08874 START_STARD9-like C-te 98.5 1.4E-06 3E-11 89.4 14.6 126 122-256 48-181 (205)
19 cd08907 START_STARD8-like C-te 98.4 1.2E-05 2.6E-10 82.5 16.1 170 72-256 7-180 (205)
20 cd08910 START_STARD2-like Lipi 98.3 1.4E-05 2.9E-10 81.8 15.8 176 88-282 21-205 (207)
21 cd08870 START_STARD2_7-like Li 98.3 4.3E-05 9.3E-10 77.9 19.2 189 80-282 8-207 (209)
22 cd08877 START_2 Uncharacterize 98.1 0.00017 3.6E-09 73.7 18.8 194 73-279 4-209 (215)
23 cd08876 START_1 Uncharacterize 98.1 6.4E-05 1.4E-09 74.7 14.5 147 119-279 41-191 (195)
24 cd08873 START_STARD14_15-like 98.1 2.9E-05 6.4E-10 81.3 12.5 169 62-249 30-203 (235)
25 cd08872 START_STARD11-like Cer 97.9 9.1E-05 2E-09 77.5 12.2 166 73-253 5-199 (235)
26 PF13426 PAS_9: PAS domain; PD 97.9 9.3E-05 2E-09 63.4 10.2 101 648-753 1-101 (104)
27 cd08911 START_STARD7-like Lipi 97.9 0.00025 5.5E-09 72.4 14.0 150 117-279 43-201 (207)
28 cd08914 START_STARD15-like Lip 97.7 0.0003 6.5E-09 73.9 12.0 180 61-262 30-215 (236)
29 cd08913 START_STARD14-like Lip 97.6 0.0007 1.5E-08 71.3 12.8 176 62-259 34-216 (240)
30 PF00989 PAS: PAS fold; Inter 97.1 0.0098 2.1E-07 51.7 11.7 107 641-752 3-111 (113)
31 PF08448 PAS_4: PAS fold; Int 96.8 0.016 3.4E-07 50.2 10.4 103 646-754 3-105 (110)
32 PRK13557 histidine kinase; Pro 96.3 0.039 8.4E-07 61.6 12.2 113 638-752 29-142 (540)
33 KOG2761 START domain-containin 95.5 0.25 5.3E-06 51.8 13.1 156 79-246 16-182 (219)
34 cd08864 SRPBCC_DUF3074 DUF3074 95.0 0.14 3.1E-06 53.0 9.9 111 141-257 65-184 (208)
35 PRK13559 hypothetical protein; 94.9 0.21 4.5E-06 53.7 11.3 114 638-753 42-156 (361)
36 TIGR00229 sensory_box PAS doma 94.7 0.61 1.3E-05 37.1 10.7 107 640-752 4-112 (124)
37 cd08904 START_STARD6-like Lipi 94.5 1.7 3.8E-05 45.0 16.1 129 323-505 21-158 (204)
38 cd08871 START_STARD10-like Lip 93.7 1.3 2.7E-05 45.7 13.4 65 312-395 13-79 (222)
39 cd08869 START_RhoGAP C-termina 93.6 2.8 6.1E-05 42.7 15.6 68 306-395 6-73 (197)
40 PRK11091 aerobic respiration c 93.5 0.57 1.2E-05 56.3 11.9 110 639-753 155-265 (779)
41 cd08874 START_STARD9-like C-te 93.0 0.7 1.5E-05 47.9 10.2 56 321-395 19-76 (205)
42 cd00130 PAS PAS domain; PAS mo 92.6 2.6 5.5E-05 31.5 10.5 98 648-751 2-100 (103)
43 cd08907 START_STARD8-like C-te 92.3 5.5 0.00012 41.7 15.5 58 321-395 24-81 (205)
44 TIGR02040 PpsR-CrtJ transcript 91.6 1.5 3.3E-05 49.1 11.5 85 639-727 133-218 (442)
45 TIGR02938 nifL_nitrog nitrogen 91.3 0.81 1.8E-05 50.2 8.8 110 639-753 4-114 (494)
46 cd00177 START Lipid-binding ST 91.1 3.9 8.6E-05 39.6 12.5 126 324-504 15-148 (193)
47 PRK13558 bacterio-opsin activa 90.0 2.6 5.6E-05 49.8 12.0 106 646-753 156-261 (665)
48 TIGR02040 PpsR-CrtJ transcript 89.9 1.7 3.7E-05 48.6 10.0 95 641-742 254-350 (442)
49 PRK13560 hypothetical protein; 89.8 2.3 5E-05 50.3 11.4 109 641-753 206-316 (807)
50 PF15058 Speriolin_N: Sperioli 89.8 0.13 2.8E-06 52.7 1.0 29 4-33 16-44 (200)
51 PF13188 PAS_8: PAS domain; PD 89.4 0.58 1.3E-05 38.1 4.4 40 640-687 2-42 (64)
52 cd08866 SRPBCC_11 Ligand-bindi 89.3 5.3 0.00011 37.2 11.3 130 122-282 2-143 (144)
53 cd08877 START_2 Uncharacterize 87.6 7.1 0.00015 40.0 11.8 72 303-395 4-77 (215)
54 cd08868 START_STARD1_3_like Ch 86.8 14 0.0003 37.8 13.3 57 321-395 21-80 (208)
55 cd08875 START_ArGLABRA2_like C 86.3 6.5 0.00014 41.7 10.9 164 302-505 3-181 (229)
56 smart00234 START in StAR and p 86.2 10 0.00022 38.0 11.8 132 323-506 18-158 (206)
57 cd08909 START_STARD13-like C-t 85.4 16 0.00036 38.1 13.1 55 324-395 27-81 (205)
58 cd07819 SRPBCC_2 Ligand-bindin 85.3 11 0.00023 34.5 10.7 110 122-252 5-114 (140)
59 cd05018 CoxG Carbon monoxide d 84.7 21 0.00045 32.8 12.4 120 123-263 5-124 (144)
60 PF08447 PAS_3: PAS fold; Int 84.2 6.9 0.00015 33.2 8.4 82 665-748 2-88 (91)
61 PRK10060 RNase II stability mo 84.1 7.1 0.00015 46.8 11.2 98 640-743 112-211 (663)
62 PRK11073 glnL nitrogen regulat 83.1 4.2 9.1E-05 43.3 8.0 91 641-739 10-100 (348)
63 PRK11359 cyclic-di-GMP phospho 83.0 7.3 0.00016 46.6 10.7 102 647-753 145-247 (799)
64 cd08913 START_STARD14-like Lip 82.8 18 0.00039 38.6 12.4 55 321-395 56-112 (240)
65 cd08860 TcmN_ARO-CYC_like N-te 81.9 16 0.00034 35.6 10.7 109 123-251 5-113 (146)
66 cd08876 START_1 Uncharacterize 80.7 3.1 6.7E-05 41.4 5.6 61 317-395 9-72 (195)
67 cd08906 START_STARD3-like Chol 80.6 29 0.00063 35.9 12.7 70 306-395 9-81 (209)
68 cd07813 COQ10p_like Coenzyme Q 80.2 27 0.00058 32.5 11.4 134 123-283 3-137 (138)
69 cd07821 PYR_PYL_RCAR_like Pyra 80.0 35 0.00075 30.9 11.8 108 124-253 6-114 (140)
70 PRK09776 putative diguanylate 79.7 8.2 0.00018 48.0 9.9 108 638-750 282-391 (1092)
71 PF01852 START: START domain; 77.5 27 0.00059 34.7 11.2 148 306-504 2-156 (206)
72 cd08861 OtcD1_ARO-CYC_like N-t 77.5 15 0.00033 34.0 8.8 28 123-150 3-30 (142)
73 cd08873 START_STARD14_15-like 77.2 3.7 7.9E-05 43.7 5.0 54 322-395 53-108 (235)
74 cd08870 START_STARD2_7-like Li 75.8 5.5 0.00012 40.8 5.8 58 323-395 21-82 (209)
75 smart00338 BRLZ basic region l 75.3 1.2 2.6E-05 37.6 0.8 28 4-31 37-64 (65)
76 PRK11360 sensory histidine kin 72.2 36 0.00079 38.3 11.7 107 640-753 263-370 (607)
77 smart00340 HALZ homeobox assoc 71.9 1.7 3.6E-05 34.7 0.7 16 5-20 17-32 (44)
78 cd08910 START_STARD2-like Lipi 71.7 7.9 0.00017 39.9 5.8 58 321-395 22-81 (207)
79 PF08961 DUF1875: Domain of un 71.5 1.3 2.8E-05 46.5 0.0 79 4-84 140-241 (243)
80 cd08911 START_STARD7-like Lipi 71.4 51 0.0011 33.9 11.6 57 322-395 19-77 (207)
81 PRK11359 cyclic-di-GMP phospho 70.2 21 0.00046 42.7 9.8 103 641-749 15-121 (799)
82 PRK09776 putative diguanylate 68.6 31 0.00066 43.0 11.0 102 646-753 544-650 (1092)
83 cd08908 START_STARD12-like C-t 67.6 78 0.0017 33.1 12.0 54 325-395 28-81 (204)
84 cd08914 START_STARD15-like Lip 67.4 8.8 0.00019 41.0 5.1 55 321-395 53-109 (236)
85 cd08903 START_STARD5-like Lipi 66.7 9.9 0.00022 39.1 5.3 56 322-395 20-79 (208)
86 PF10604 Polyketide_cyc2: Poly 66.1 1E+02 0.0022 27.8 11.9 36 123-158 6-41 (139)
87 PF13596 PAS_10: PAS domain; P 64.3 37 0.00079 30.3 7.9 97 647-753 8-104 (106)
88 PRK10724 hypothetical protein; 63.5 1.2E+02 0.0027 30.1 12.1 134 122-284 18-154 (158)
89 PRK13560 hypothetical protein; 60.7 66 0.0014 38.2 11.3 107 641-753 334-461 (807)
90 cd08865 SRPBCC_10 Ligand-bindi 60.0 1.3E+02 0.0029 27.0 11.8 37 124-160 4-40 (140)
91 smart00091 PAS PAS domain. PAS 59.4 36 0.00077 23.2 5.7 59 642-704 4-63 (67)
92 cd08872 START_STARD11-like Cer 55.8 34 0.00075 36.2 7.1 65 314-394 16-83 (235)
93 PHA03162 hypothetical protein; 54.9 5.8 0.00013 38.8 1.1 23 10-32 16-38 (135)
94 cd08905 START_STARD1-like Chol 54.3 1.8E+02 0.0039 30.0 11.9 72 304-395 7-81 (209)
95 cd08902 START_STARD4-like Lipi 53.5 3E+02 0.0064 29.1 18.3 57 321-395 20-78 (202)
96 PF05812 Herpes_BLRF2: Herpesv 52.9 6.3 0.00014 37.9 0.9 25 10-34 6-30 (118)
97 TIGR02966 phoR_proteo phosphat 50.6 52 0.0011 34.0 7.4 48 641-692 8-56 (333)
98 COG1415 Uncharacterized conser 48.4 91 0.002 35.4 9.0 126 593-733 7-161 (373)
99 PRK11006 phoR phosphate regulo 48.4 44 0.00096 37.2 6.9 50 639-692 98-148 (430)
100 cd07822 SRPBCC_4 Ligand-bindin 46.7 2.2E+02 0.0048 25.6 11.4 43 123-165 4-46 (141)
101 PRK10820 DNA-binding transcrip 45.3 1.2E+02 0.0026 35.8 10.0 99 641-752 82-183 (520)
102 cd07818 SRPBCC_1 Ligand-bindin 44.8 2.2E+02 0.0047 26.6 10.0 28 122-149 5-32 (150)
103 cd07823 SRPBCC_5 Ligand-bindin 44.3 2.8E+02 0.0061 26.2 11.4 34 124-157 4-37 (146)
104 KOG4005 Transcription factor X 43.4 8.4 0.00018 41.1 0.2 30 2-31 106-135 (292)
105 cd08867 START_STARD4_5_6-like 42.0 67 0.0015 32.7 6.5 67 304-394 8-78 (206)
106 cd07824 SRPBCC_6 Ligand-bindin 41.6 3.1E+02 0.0067 25.9 11.0 114 126-264 8-128 (146)
107 PRK09413 IS2 repressor TnpA; R 37.9 14 0.00031 34.9 0.8 27 5-31 76-102 (121)
108 TIGR00219 mreC rod shape-deter 36.7 15 0.00032 40.0 0.8 28 5-32 71-109 (283)
109 KOG0709 CREB/ATF family transc 35.8 15 0.00032 42.6 0.7 28 6-33 285-312 (472)
110 PLN00188 enhanced disease resi 34.9 1.9E+02 0.004 35.8 9.5 97 375-506 236-342 (719)
111 PHA03155 hypothetical protein; 33.3 18 0.00039 34.7 0.7 65 10-92 11-78 (115)
112 PRK13922 rod shape-determining 31.5 17 0.00037 38.8 0.2 30 2-31 78-110 (276)
113 PF06156 DUF972: Protein of un 31.1 16 0.00034 34.5 -0.1 20 5-31 34-53 (107)
114 PF05559 DUF763: Protein of un 31.0 2.4E+02 0.0052 31.7 8.8 125 593-732 3-156 (319)
115 KOG1739 Serine/threonine prote 30.4 1.6E+02 0.0035 34.8 7.6 142 113-263 423-585 (611)
116 cd07817 SRPBCC_8 Ligand-bindin 25.2 5.1E+02 0.011 23.4 12.2 104 123-252 4-107 (139)
117 PRK11086 sensory histidine kin 22.8 4.3E+02 0.0093 29.9 9.4 91 646-753 229-322 (542)
118 PF09755 DUF2046: Uncharacteri 20.6 1.2E+02 0.0026 33.9 4.2 24 10-33 181-204 (310)
119 PF08410 DUF1737: Domain of un 20.2 2E+02 0.0044 24.3 4.5 40 697-737 15-54 (54)
No 1
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=100.00 E-value=4.2e-77 Score=608.77 Aligned_cols=211 Identities=36% Similarity=0.595 Sum_probs=198.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCC---CCCccceeeecC------CCceeeeeeeeEEeeChhhhhhhhc
Q 004383 69 PAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKP---GPDSIGIVAVSR------NCSGVAARACGLVSLDPTKIAEILK 139 (757)
Q Consensus 69 ~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~---gpdsig~~~~~~------~~~~eAsRa~glV~m~~~~LVe~lm 139 (757)
+++|++||++||+||++|||+++|+|+++||||+ ++|+++....++ ||++|||||||+|.||+.+|||+||
T Consensus 1 k~~~~~lA~~am~Ell~~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~~~~~~~~~~eASR~~glV~m~~~~lVe~lm 80 (229)
T cd08875 1 KSGLLELAEEAMDELLKLAQGGEPLWIKSPGMKPEILNPDEYERMFPRHGGSKPGGFTTEASRACGLVMMNAIKLVEILM 80 (229)
T ss_pred ChHHHHHHHHHHHHHHHHhccCCCCceecCCCCccccCHHHHhhcccCcCCCCCCCCeEEEEeeeEEEecCHHHHHHHHh
Confidence 4789999999999999999999999999999998 899998655433 5999999999999999999999999
Q ss_pred CcchhhhhCccc----eeeeeeccCC----CCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCC
Q 004383 140 DCPSWFRDCRCL----DVLSVIPTGN----GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGG 211 (757)
Q Consensus 140 D~~~W~~~f~~i----~vl~~~~~g~----~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~ 211 (757)
|+++|.++||++ +|++++++|+ ||+|||||+|||+||||||+|||||||||||++||+|||||||+|+.+.
T Consensus 81 D~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~~l~dG~w~VvdvSld~~~~- 159 (229)
T cd08875 81 DVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCKQLEDGLWAVVDVSIDGVQT- 159 (229)
T ss_pred ChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEEEeCCCeEEEEEEeeccccc-
Confidence 999999988776 9999999997 7899999999999999999999999999999999999999999998752
Q ss_pred CCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHH-HHHh
Q 004383 212 PTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RHIR 282 (757)
Q Consensus 212 ~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaL-r~~e 282 (757)
.++.++|+||||+|||||||||+|||||||||||+|||++.+|.+||+++.||+||||+||+++| ||||
T Consensus 160 --~p~~~~~~r~~~~PSGcLIq~~~nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~rw~a~lqRqce 229 (229)
T cd08875 160 --APPPASFVRCRRLPSGCLIQDMPNGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATRWVATLQRQCE 229 (229)
T ss_pred --CCCCCCccEEEEecCcEEEEECCCCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHHHHHHHHHhcC
Confidence 33456799999999999999999999999999999999999999999999999999999999999 7997
No 2
>PF08670 MEKHLA: MEKHLA domain; InterPro: IPR013978 The MEKHLA domain shares similarity with the PAS domain and is found in the 3' end of plant HD-ZIP III homeobox genes, and bacterial proteins.
Probab=100.00 E-value=1.6e-59 Score=451.99 Aligned_cols=148 Identities=41% Similarity=0.620 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc
Q 004383 608 PEALTLARWISRSYRIHTGGELLRADSLTGDALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML 687 (757)
Q Consensus 608 pea~~la~~i~~SYr~~~G~~L~~~~~~~~~~~~k~L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lps 687 (757)
||+++|+++|++|||++||++|+++...+.++.+++||||||+||||+++ +||+||||||+||+||||||+||++|||
T Consensus 1 pe~~~~~~~l~~SY~~~~G~~L~~~~~~~~~~~~~~L~~ap~ailsh~~~--~dP~f~yaN~aaL~l~e~~w~el~~lPs 78 (148)
T PF08670_consen 1 PEALALAQLLLQSYRRWTGRDLLPSDDSSAEELAKALWHAPFAILSHGTK--ADPIFIYANQAALDLFETTWDELVGLPS 78 (148)
T ss_pred ChHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHcCCCEEEEcCCC--CCCEEEehhHHHHHHhcCCHHHHhcCcH
Confidence 79999999999999999999999997777889999999999999999999 9999999999999999999999999999
Q ss_pred cccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecCcccC
Q 004383 688 DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMNWSFV 757 (757)
Q Consensus 688 r~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~nWsfl 757 (757)
||||||++|+||+++|++|++|||+++|+||||||+||||+||+|+||||+|++|++|||||||.||+||
T Consensus 79 r~sae~~~r~er~~lL~~v~~qG~~~~y~GiRiss~Grrf~ie~a~vW~l~D~~g~~~GqAa~F~~W~~l 148 (148)
T PF08670_consen 79 RLSAEEPERKERQSLLAQVMQQGYIDNYSGIRISSTGRRFRIERATVWNLIDEDGNYCGQAAMFSNWSFL 148 (148)
T ss_pred hhccChhhHHHHHHHHHHHHHhCCccCCCeEEEcCCCCeEEEeceEEEEEEcCCCCEEEEEEEEeeeEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997
No 3
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.83 E-value=1.5e-19 Score=179.25 Aligned_cols=200 Identities=29% Similarity=0.395 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCCceeeeeeeeEEeeChhhhhhhhcCcc-hhhhhCccce
Q 004383 74 AVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDCP-SWFRDCRCLD 152 (757)
Q Consensus 74 ~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~~~eAsRa~glV~m~~~~LVe~lmD~~-~W~~~f~~i~ 152 (757)
++|++.+.+++++++.++..|....+.+.+.-.+-....+.++.+..-|..++|...+.++++.|+|.+ +|..+|..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~~~Wd~~~~~~~ 80 (206)
T PF01852_consen 1 ELAEELMQEELALAQEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDREQWDKMCVEAE 80 (206)
T ss_dssp -HHHHHHHHHHHHHHHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGGGHHSTTEEEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhHhhcccchhhhe
Confidence 589999999999999999999998644555444444322333688899999999999999999999988 9999999999
Q ss_pred eeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCC-CCccceeeeccccee
Q 004383 153 VLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPP-PSSFVRAEMLASGFL 231 (757)
Q Consensus 153 vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~-~~~f~r~~rlPSGcL 231 (757)
+|+.++.+ ..|..++.++..++|+.| |||.++|++++.++|.++|+.+|++... .++ .+.++|+..++||++
T Consensus 81 ~le~~~~~--~~i~~~~~~~~~~~p~~~-RDfv~~~~~~~~~~~~~~i~~~Si~~~~----~~~~~~~~VR~~~~~s~~~ 153 (206)
T PF01852_consen 81 VLEQIDED--TDIVYFVMKSPWPGPVSP-RDFVFLRSWRKDEDGTYVIVSRSIDHPQ----YPPNSKGYVRAEILISGWV 153 (206)
T ss_dssp EEEEEETT--EEEEEEEEE-CTTTTSSE-EEEEEEEEEEECTTSEEEEEEEEEEBTT----SSTT-TTSEEEEEESEEEE
T ss_pred eeeecCCC--CeEEEEEecccCCCCCCC-cEEEEEEEEEEeccceEEEEEeeecccc----ccccccCcceeeeeeEeEE
Confidence 99999865 668888888888889999 9999999999999999999999998643 233 568999999999999
Q ss_pred eeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHHH
Q 004383 232 IRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMRH 280 (757)
Q Consensus 232 Iq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr~ 280 (757)
|++.++|.|+||+|.|+|...|..+-+.+.++.+...-..+.+.++||+
T Consensus 154 i~~~~~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~~~ 202 (206)
T PF01852_consen 154 IRPLGDGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKALKK 202 (206)
T ss_dssp EEEETTCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccCCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888888888863
No 4
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.80 E-value=3.3e-18 Score=170.16 Aligned_cols=198 Identities=33% Similarity=0.491 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCCceeeeeeeeEEeeChhh-hhhhhcCc---chhhhhCcc
Q 004383 75 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTK-IAEILKDC---PSWFRDCRC 150 (757)
Q Consensus 75 iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~~~eAsRa~glV~m~~~~-LVe~lmD~---~~W~~~f~~ 150 (757)
.|++++.|++.++...+..|....+++.+..++.... +.+..+.+-|+.++|...+.+ +.++|.|. ++|-..|..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~ 80 (206)
T smart00234 2 VAEEAAAELLKMAAASEPGWVLSSENENGDEVRSILS-PGRSPGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAK 80 (206)
T ss_pred hHHHHHHHHHHHhhCCCCccEEccccCCcceEEEEcc-CCCCceEEEEEEEEEecChHHHHHHHHhcccchhhCchhccc
Confidence 4789999999999999999999876666655444431 222467899999999999997 66788786 789999999
Q ss_pred ceeeeeeccCCCCeeeeeeehhccc-ccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecccc
Q 004383 151 LDVLSVIPTGNGGTIELIYMQTYAP-TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASG 229 (757)
Q Consensus 151 i~vl~~~~~g~~G~lqLm~~e~~v~-SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSG 229 (757)
.++|+.++.+ . .++|.-+..| +| ++.|||.++|++++.++|.|+|+..|++.. ..|+...++|++.++||
T Consensus 81 ~~~ie~~~~~--~--~i~~~~~~~~~~p-~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~----~~p~~~~~VR~~~~~~~ 151 (206)
T smart00234 81 AETLEVIDNG--T--VIYHYVSKFVAGP-VSPRDFVFVRYWRELVDGSYAVVDVSVTHP----TSPPTSGYVRAENLPSG 151 (206)
T ss_pred EEEEEEECCC--C--eEEEEEEecccCc-CCCCeEEEEEEEEEcCCCcEEEEEEECCCC----CCCCCCCceEEEEeceE
Confidence 9999998754 2 3444433333 35 455999999999999999999999999853 34445689999999999
Q ss_pred eeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHh
Q 004383 230 FLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 282 (757)
Q Consensus 230 cLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~e 282 (757)
++|+++++|.|+|||+.|+|..-+..+-+.+.++.++.....+++.++|+ +|+
T Consensus 152 ~~i~p~~~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~~~~~ 205 (206)
T smart00234 152 LLIEPLGNGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQKHCA 205 (206)
T ss_pred EEEEECCCCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999977889999999999999999999995 775
No 5
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.46 E-value=2.7e-12 Score=124.31 Aligned_cols=184 Identities=24% Similarity=0.405 Sum_probs=143.5
Q ss_pred HHHHHHHHhhcCCCcceeecCCCCCCCCccceee-ecCCCceeeeeeeeEEeeChhhhhhhhcC---cchhhhhCcccee
Q 004383 78 ETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA-VSRNCSGVAARACGLVSLDPTKIAEILKD---CPSWFRDCRCLDV 153 (757)
Q Consensus 78 ~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~-~~~~~~~eAsRa~glV~m~~~~LVe~lmD---~~~W~~~f~~i~v 153 (757)
++..+++.+...+ ..|-.....+ + +-++. ...+.....-|..+.|..++.++.++|+| +.+|...|...++
T Consensus 2 ~~~~~~~~~~~~~-~~W~~~~~~~-~---v~vy~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~v 76 (193)
T cd00177 2 EAIEELLELLEEP-EGWKLVKEKD-G---VKIYTKPYEDSGLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEV 76 (193)
T ss_pred hHHHHHhhccccC-CCeEEEEECC-c---EEEEEecCCCCCceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEE
Confidence 5677888888888 7898863322 1 11111 12223457889999999999999999999 7779888888899
Q ss_pred eeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeee
Q 004383 154 LSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIR 233 (757)
Q Consensus 154 l~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq 233 (757)
+..+..+ ..++|..+..|.| ++.|||.++|++.+.++|.++++-.|++.. ..|....++|++.+++|++|+
T Consensus 77 l~~~~~~----~~i~~~~~~~p~p-~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~----~~p~~~~~vR~~~~~~~~~i~ 147 (193)
T cd00177 77 IEEIDEH----TDIIYYKTKPPWP-VSPRDFVYLRRRRKLDDGTYVIVSKSVDHD----SHPKEKGYVRAEIKLSGWIIE 147 (193)
T ss_pred EEEeCCC----eEEEEEEeeCCCc-cCCccEEEEEEEEEcCCCeEEEEEeecCCC----CCCCCCCcEEEEEEccEEEEE
Confidence 9987643 7889999999999 999999999999999999999999999863 223344789999999999999
Q ss_pred ecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH
Q 004383 234 PCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 279 (757)
Q Consensus 234 ~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr 279 (757)
++++|.|+||++.|+|..-+..+ .++.+...-+...++..++
T Consensus 148 ~~~~~~~~vt~~~~~D~~g~iP~----~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 148 PLDPGKTKVTYVLQVDPKGSIPK----SLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred ECCCCCEEEEEEEeeCCCCCccH----HHHHhhhhhccHHHHHHHH
Confidence 99999999999999998876433 5555555444455554444
No 6
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.27 E-value=2.4e-10 Score=116.71 Aligned_cols=192 Identities=19% Similarity=0.291 Sum_probs=147.6
Q ss_pred HHHHHHHHHHhhcCCCcceeecCCCCCCCCccceee-ecCCCceeeeeeeeEE-eeChhhhhhhhcC---cchhhhhCcc
Q 004383 76 AEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA-VSRNCSGVAARACGLV-SLDPTKIAEILKD---CPSWFRDCRC 150 (757)
Q Consensus 76 Ae~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~-~~~~~~~eAsRa~glV-~m~~~~LVe~lmD---~~~W~~~f~~ 150 (757)
-++.+++|+.++..++ .|-..-. +.| +-++. ...+...-.-|+.+.+ ...+..+.+.|+| +.+|...|..
T Consensus 8 ~~~~~~~~~~~~~~~~-~W~~~~~-~~g---i~iy~r~~~~~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e 82 (222)
T cd08871 8 TDADFEEFKKLCDSTD-GWKLKYN-KNN---VKVWTKNPENSSIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIE 82 (222)
T ss_pred CHHHHHHHHHHhcCCC-CcEEEEc-CCC---eEEEEeeCCCCceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhce
Confidence 3688999999997655 8988632 222 22222 1334455677888876 6788899999999 5889999988
Q ss_pred ceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecccce
Q 004383 151 LDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGF 230 (757)
Q Consensus 151 i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGc 230 (757)
.++|+.+..+ ..++|..+..|-| +..|||.++|..+..+ |..+|+..|++. +..|+...++|.....+|+
T Consensus 83 ~~~ie~~d~~----~~i~y~~~~~P~p-vs~RDfV~~r~~~~~~-~~~vi~~~sv~~----~~~P~~~g~VR~~~~~~g~ 152 (222)
T cd08871 83 SFDICQLNPN----NDIGYYSAKCPKP-LKNRDFVNLRSWLEFG-GEYIIFNHSVKH----KKYPPRKGFVRAISLLTGY 152 (222)
T ss_pred eEEEEEcCCC----CEEEEEEeECCCC-CCCCeEEEEEEEEeCC-CEEEEEeccccC----CCCCCCCCeEEeEEEccEE
Confidence 8888877532 5789999999988 8999999999998776 888999999874 3345566899999999999
Q ss_pred eeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHhhhcc
Q 004383 231 LIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQIAQ 286 (757)
Q Consensus 231 LIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~erla~ 286 (757)
+|++.+++.|+||++-|+|..-+ +|. -+++....-+.-.++..|| .|++...
T Consensus 153 ~i~p~~~~~t~vt~~~~~Dp~G~-IP~---~lvN~~~~~~~~~~l~~l~k~~~~y~~ 205 (222)
T cd08871 153 LIRPTGPKGCTLTYVTQNDPKGS-LPK---WVVNKATTKLAPKVMKKLHKAALKYPE 205 (222)
T ss_pred EEEECCCCCEEEEEEEecCCCCC-cCH---HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876 553 3455555556668888886 7776544
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=99.27 E-value=2.9e-10 Score=115.06 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhh-hcC---cchhhh
Q 004383 72 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEI-LKD---CPSWFR 146 (757)
Q Consensus 72 ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~-lmD---~~~W~~ 146 (757)
-.+++++|++|++.+.+ ++.|-..-..+.| +-+..- -.+ .+-.-|+.++|...+.++++. +.| +.+|..
T Consensus 6 y~~~~~~~~~~~~~~~~--~~~W~l~~~~~~~---i~i~~r~~~~-~~~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~ 79 (208)
T cd08868 6 YLKQGAEALARAWSILT--DPGWKLEKNTTWG---DVVYSRNVPG-VGKVFRLTGVLDCPAEFLYNELVLNVESLPSWNP 79 (208)
T ss_pred HHHHHHHHHHHHHHHhc--CCCceEEEecCCC---CEEEEEEcCC-CceEEEEEEEEcCCHHHHHHHHHcCccccceecC
Confidence 57899999999999965 5599886221111 112211 122 335689999999999998764 444 578999
Q ss_pred hCccceeeeeeccCCCCeeeeeeehhccc-ccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeee
Q 004383 147 DCRCLDVLSVIPTGNGGTIELIYMQTYAP-TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 225 (757)
Q Consensus 147 ~f~~i~vl~~~~~g~~G~lqLm~~e~~v~-SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~r 225 (757)
.|-..++|+.+.. ...++|..+..+ .++|..|||.++|+.++.+ |.++|+..|++. +..|+...++|+..
T Consensus 80 ~~~~~~~i~~~d~----~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h----~~~P~~~g~VR~~~ 150 (208)
T cd08868 80 TVLECKIIQVIDD----NTDISYQVAAEAGGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEH----PAMPPTKNYVRGEN 150 (208)
T ss_pred cccceEEEEEecC----CcEEEEEEecCcCCCcccccceEEEEEEEecC-CeEEEEEEeccC----CCCCCCCCeEEEec
Confidence 9999999988753 345666544433 3689999999999999866 679999999863 33456678999999
Q ss_pred cccceeeeecCC--CceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 004383 226 LASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 284 (757)
Q Consensus 226 lPSGcLIq~~~n--G~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~erl 284 (757)
.++|++|+|+++ +.|+|+|+-|+|..-| +|. -++++.+.-+.-.++..|| +|+.|
T Consensus 151 ~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~~~ 208 (208)
T cd08868 151 GPGCWILRPLPNNPNKCNFTWLLNTDLKGW-LPQ---YLVDQALASVLLDFMKHLRKRIATL 208 (208)
T ss_pred cccEEEEEECCCCCCceEEEEEEEECCCCC-Ccc---eeeehhhHHHHHHHHHHHHHHHhhC
Confidence 999999999987 6899999999998755 553 3366666677778899996 77654
No 8
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.21 E-value=9.5e-10 Score=111.14 Aligned_cols=190 Identities=23% Similarity=0.301 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhhhcC-----cchhhh
Q 004383 73 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKD-----CPSWFR 146 (757)
Q Consensus 73 l~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~lmD-----~~~W~~ 146 (757)
-.|+++|.+|++..... +..|-..... .+ +-+... ..++.+-.-|..|.+...+.++++.|+| +.+|..
T Consensus 4 ~~~~~~~~~~~~~~~~~-~~~W~~~~~~-~~---i~v~~~~~~~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~ 78 (206)
T cd08867 4 KVIAEKLANEALQYIND-TDGWKVLKTV-KN---ITVSWKPSTEFTGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDK 78 (206)
T ss_pred HHHHHHHHHHHHHHhcC-cCCcEEEEcC-CC---cEEEEecCCCCCCEEEEEEEEEcCCHHHHHHHHHhcCccccccccc
Confidence 46899999999999884 3789886322 11 112211 1223333469999999999999999998 578999
Q ss_pred hCccceeeeeeccCCCCeeeeeeehhcc-cccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeee
Q 004383 147 DCRCLDVLSVIPTGNGGTIELIYMQTYA-PTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 225 (757)
Q Consensus 147 ~f~~i~vl~~~~~g~~G~lqLm~~e~~v-~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~r 225 (757)
.|-..++|+.+... ..++|...-- +.++|..|||..+||.++.++|.++++-.|++. |..|+.+.++|++.
T Consensus 79 ~~~~~~~le~id~~----~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~h----p~~p~~~~~VR~~~ 150 (206)
T cd08867 79 SLKHYEVLEKISED----LCVGRTITPSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDI----PERPPTPGFVRGYN 150 (206)
T ss_pred cccceEEEEEeCCC----eEEEEEEccccccCccCCcceEEEEEEEEeCCCeEEEEEEeccC----CCCCCCCCcEEEEe
Confidence 99999999988532 3456653221 235799999999999999999999999999874 34556678999999
Q ss_pred cccceeeeecC--CCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH
Q 004383 226 LASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 279 (757)
Q Consensus 226 lPSGcLIq~~~--nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr 279 (757)
.++||+|+|.+ ++.|+|+|+-|+|..-+ +| +-++++.++=+.--|+..||
T Consensus 151 ~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~-iP---~~lvn~~~~~~~~~~~~~lr 202 (206)
T cd08867 151 HPCGYFCSPLKGSPDKSFLVLYVQTDLRGM-IP---QSLVESAMPSNLVNFYTDLV 202 (206)
T ss_pred ecCEEEEEECCCCCCceEEEEEEEeccCCC-Cc---HHHHHhhhhhhHHHHHHHHH
Confidence 99999999986 57899999999998743 44 34555555445555677775
No 9
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=99.14 E-value=1.5e-09 Score=110.81 Aligned_cols=168 Identities=21% Similarity=0.275 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhhhcCcc---hhhhhC
Q 004383 73 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SWFRDC 148 (757)
Q Consensus 73 l~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~lmD~~---~W~~~f 148 (757)
..|+++|++|+++.-. ..=.|-.- |.+.+ +.+... ++.+.+---|..|+|..++.+|+|.+-|.+ +|-+.|
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~gWk~~---k~~~~-~~v~~k~~~~~~gkl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~ 78 (204)
T cd08904 4 KKIAQETSQEVLGYSR-DTSGWKVV---KTSKK-ITVSWKPSRKYHGNLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSL 78 (204)
T ss_pred HHHHHHHHHHHHhhhh-cccCCeEE---ecCCc-eEEEEEEcCCCCceEEEEEEEecCCHHHHHHHHhccchhhhhcccc
Confidence 4789999999999988 44789875 33322 222222 456677788999999999999999998865 466666
Q ss_pred ccceeeeeeccCCCCeeeeeeehhc-ccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecc
Q 004383 149 RCLDVLSVIPTGNGGTIELIYMQTY-APTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 227 (757)
Q Consensus 149 ~~i~vl~~~~~g~~G~lqLm~~e~~-v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlP 227 (757)
-..++|+.+... ..+.|..++ .+-++|-+|||..+||.++.++|.++|+..|++. |..|+...|+|++..|
T Consensus 79 ~~~~iie~Id~~----T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~H----p~~Pp~~g~VRa~n~~ 150 (204)
T cd08904 79 QVYKMLQRIDSD----TFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEY----PQCPPSSNYIRGYNHP 150 (204)
T ss_pred cceeeEEEeCCC----cEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEEEEeccc----CCCCCCCCcEEEeeec
Confidence 666777776632 356676654 3457899999999999999999999999999864 5566778999999999
Q ss_pred cceeeeecCCC--ceEEEEEEeeeecCC
Q 004383 228 SGFLIRPCEGG--GSIIHIVDHVDLDAW 253 (757)
Q Consensus 228 SGcLIq~~~nG--~SkVtwVeH~e~d~~ 253 (757)
+||+|+|.+++ +|+.+|+-++|+.-|
T Consensus 151 ~G~~i~pl~~~p~~t~l~~~~~~DlkG~ 178 (204)
T cd08904 151 CGYVCSPLPENPAYSKLVMFVQPELRGN 178 (204)
T ss_pred cEEEEEECCCCCCceEEEEEEEeCCCCC
Confidence 99999999874 899999999887744
No 10
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.08 E-value=7.7e-09 Score=105.40 Aligned_cols=188 Identities=18% Similarity=0.276 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhhhcCc-----chhhh
Q 004383 73 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDC-----PSWFR 146 (757)
Q Consensus 73 l~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~lmD~-----~~W~~ 146 (757)
.+++++|+++++..-+ .+-.|-..-.. +-+-+... .+...+-.-|.-|+|..++.+|++.|+|. .+|..
T Consensus 4 ~~~~~~~~~~~l~~~~-~~~~W~~~~~~----~~i~v~~~~~~~~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~ 78 (208)
T cd08903 4 AELAESVADKMLLYRR-DESGWKTCRRT----NEVAVSWRPSAEFAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQ 78 (208)
T ss_pred HHHHHHHHHHHHhhhc-cccCCEEEEcC----CCEEEEeeecCCCCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhh
Confidence 5789999999999885 66789885221 11112111 12333334799999999999999999965 68999
Q ss_pred hCccceeeeeeccCCCCeeeeeeehhccccc---ccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCcccee
Q 004383 147 DCRCLDVLSVIPTGNGGTIELIYMQTYAPTT---LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 223 (757)
Q Consensus 147 ~f~~i~vl~~~~~g~~G~lqLm~~e~~v~Sp---Lvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~ 223 (757)
.|-..++|+.+... ..+.|. ..|.| ++.+|||..+|+.++.+||.++|.-.|... |..|+.+.|+|+
T Consensus 79 ~~~~~~vle~id~~----~~i~~~--~~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h----~~~P~~~~~VR~ 148 (208)
T cd08903 79 NVKDFEVVEAISDD----VSVCRT--VTPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEH----PLCPPQAGFVRG 148 (208)
T ss_pred ccccEEEEEEecCC----EEEEEE--ecchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccC----CCCCCCCCeEEE
Confidence 99999999988732 334444 45555 699999999999999999998877767653 445667799999
Q ss_pred eecccceeeeecCC--CceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH
Q 004383 224 EMLASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 279 (757)
Q Consensus 224 ~rlPSGcLIq~~~n--G~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr 279 (757)
++.|+|++|.+.++ +.|+|+|+-|+|.. ..+| +.++++.++=+...++..||
T Consensus 149 ~~~~~g~~~~~~~~~~~~t~v~~~~~~Dpk-G~iP---~~lvn~~~~~~~~~~~~~Lr 202 (208)
T cd08903 149 FNHPCGCFCEPVPGEPDKTQLVSFFQTDLS-GYLP---QTVVDSFFPASMAEFYNNLT 202 (208)
T ss_pred eeeccEEEEEECCCCCCceEEEEEEEeccC-CCcC---HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999964 58999999888875 3466 34554333334444555554
No 11
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.06 E-value=4.7e-09 Score=107.01 Aligned_cols=193 Identities=18% Similarity=0.221 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCCceeeeeeeeEEeeChhhhhhhhc-C---cchhhhh
Q 004383 72 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILK-D---CPSWFRD 147 (757)
Q Consensus 72 ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~~~eAsRa~glV~m~~~~LVe~lm-D---~~~W~~~ 147 (757)
-..++++|++|++++.+ .+-.|-.--..+ +-+-++.......+-+-|.-++|...+.+|++.|. | ..+|...
T Consensus 6 y~~~~~~~~~~~~~~~~-~~~~W~~~~~~~---~gi~v~s~~~~~~~k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~ 81 (209)
T cd08905 6 YIKQGEEALQKSLSILQ-DQEGWKTEIVAE---NGDKVLSKVVPDIGKVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHHHHHHHHHHHHHhc-cccCCEEEEecC---CCCEEEEEEcCCCCcEEEEEEEecCCHHHHHHHHHhchhhhceeccc
Confidence 45789999999999996 556898751112 21222221222223778889999999999995555 4 3789999
Q ss_pred CccceeeeeeccCCCCeeeeeeehhccccc--ccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeee
Q 004383 148 CRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 225 (757)
Q Consensus 148 f~~i~vl~~~~~g~~G~lqLm~~e~~v~Sp--Lvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~r 225 (757)
|..+++|+.+... -.++|. ..+|.| +|..|||..+|+.++.+++ -+++..|.+. +..|+...++|++.
T Consensus 82 ~~~~~vl~~id~~----~~i~y~-~~~p~p~~~vs~RD~V~~~~~~~~~~~-~~~~~~s~~~----~~~P~~~~~VR~~~ 151 (209)
T cd08905 82 VKEVKILQRIGKD----TLITHE-VAAETAGNVVGPRDFVSVRCAKRRGST-CVLAGMATHF----GLMPEQKGFIRAEN 151 (209)
T ss_pred chHHHHHhhcCCC----ceEEEE-EeccCCCCccCccceEEEEEEEEcCCc-EEEEEEeecC----CCCCCCCCeEEEEe
Confidence 9998888877642 345665 667766 7999999999999988655 4566677553 34566678999999
Q ss_pred cccceeeeecCC--CceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHh
Q 004383 226 LASGFLIRPCEG--GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 282 (757)
Q Consensus 226 lPSGcLIq~~~n--G~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~e 282 (757)
.++|++|+|+++ |.|+|+|+-|+|..-+ +|. .|+++.++=+.--++..|| +++
T Consensus 152 ~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~-iP~---~lvN~~~~~~~~~~~~~Lr~~~~ 207 (209)
T cd08905 152 GPTCIVLRPLAGDPSKTKLTWLLSIDLKGW-LPK---SIINQVLSQTQVDFANHLRQRMA 207 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEeecCCCC-CCH---HHHHHHhHHhHHHHHHHHHHHHh
Confidence 999999999988 9999999999998766 663 4555554445556677775 443
No 12
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.91 E-value=3.2e-08 Score=101.34 Aligned_cols=130 Identities=25% Similarity=0.326 Sum_probs=104.0
Q ss_pred ceeeeeeeeEEeeChhhh-hhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeee-eC
Q 004383 117 SGVAARACGLVSLDPTKI-AEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LE 194 (757)
Q Consensus 117 ~~eAsRa~glV~m~~~~L-Ve~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckq-l~ 194 (757)
.--.-|...-|.-.|..+ ..++.++.+|-..|-.-++++.+.. ..++.|-.+.-|-|+ |.|||+.+|+.++ ++
T Consensus 50 ~lk~~r~~~ei~~~p~~VL~~vl~~R~~WD~~~~~~~~ie~ld~----~tdi~~y~~~~~~P~-~~RD~v~~R~w~~~~~ 124 (205)
T cd08909 50 PLRLWKVSVEVEAPPSVVLNRVLRERHLWDEDFLQWKVVETLDK----QTEVYQYVLNCMAPH-PSRDFVVLRSWRTDLP 124 (205)
T ss_pred ceEEEEEEEEeCCCHHHHHHHHHhhHhhHHhhcceeEEEEEeCC----CcEEEEEEeecCCCC-CCCEEEEEEEEEEeCC
Confidence 344667777777777766 4577788999999988888888773 256677777767776 9999999999765 46
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccc
Q 004383 195 DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 257 (757)
Q Consensus 195 ~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~e 257 (757)
+|+.+|+.+|++... .|+ ..|+|+..+-+||+|+|+++|.|+||++-|+|..-+ +|.
T Consensus 125 ~G~~vi~~~Sv~H~~----~p~-~g~VRa~~~~~gylI~P~~~g~trvt~i~~vDpkG~-~P~ 181 (205)
T cd08909 125 KGACSLVSVSVEHEE----APL-LGGVRAVVLDSQYLIEPCGSGKSRLTHICRVDLKGH-SPE 181 (205)
T ss_pred CCcEEEEEecCCCCc----CCC-CCcEEEEEEcCcEEEEECCCCCEEEEEEEEecCCCC-ChH
Confidence 999999999998643 223 378999999999999999999999999999987544 453
No 13
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.90 E-value=3.7e-08 Score=99.57 Aligned_cols=167 Identities=26% Similarity=0.361 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhhcCCCcceeecCCCCCCCCcccee--eecCCCceeeeeeeeEEeeChhhhhhhhcC-cchhhhhCccce
Q 004383 76 AEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIV--AVSRNCSGVAARACGLVSLDPTKIAEILKD-CPSWFRDCRCLD 152 (757)
Q Consensus 76 Ae~am~Efl~~At~~~plWv~~pg~k~gpdsig~~--~~~~~~~~eAsRa~glV~m~~~~LVe~lmD-~~~W~~~f~~i~ 152 (757)
-+.+.++|++-+...+..|.-... .+-|-+. ..+.++...+=|..+.|.-.+.++++.|+| +.+|-..|-..+
T Consensus 3 ~~~~~~~ll~~~~~~~~~W~~~~~----~~gi~I~~k~~~~~~~l~~~K~~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~ 78 (197)
T cd08869 3 LERCVQDLLREARDKSKGWVSVSS----SDHVELAFKKVDDGHPLRLWRASTEVEAPPEEVLQRILRERHLWDDDLLQWK 78 (197)
T ss_pred HHHHHHHHHHHHhhccCCceEEec----CCcEEEEEEeCCCCCcEEEEEEEEEeCCCHHHHHHHHHHHHhccchhhheEE
Confidence 467788999999988999987522 2212122 123455667889999999999999875555 566999999999
Q ss_pred eeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeee-eCCCcEEEEEeecCCCCCCCCCCCCCccceeeeccccee
Q 004383 153 VLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFL 231 (757)
Q Consensus 153 vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckq-l~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcL 231 (757)
+|+.+... ..++|..+..|-| +++|||..+|+++. .++|..+|.=.|++... ..|+ .|+|++.+++|++
T Consensus 79 vie~id~~----~~i~y~~~~~p~p-v~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~---~~p~--g~VR~~~~~~g~~ 148 (197)
T cd08869 79 VVETLDED----TEVYQYVTNSMAP-HPTRDYVVLRTWRTDLPKGACVLVETSVEHTE---PVPL--GGVRAVVLASRYL 148 (197)
T ss_pred EEEEecCC----cEEEEEEeeCCCC-CCCceEEEEEEEEecCCCCcEEEEEECCcCCC---CCCC--CCEEEEEEeeeEE
Confidence 99988642 4678888888877 59999999999875 67889999999986421 1222 8999999999999
Q ss_pred eeecCCCceEEEEEEeeeecCCcccc
Q 004383 232 IRPCEGGGSIIHIVDHVDLDAWSVPE 257 (757)
Q Consensus 232 Iq~~~nG~SkVtwVeH~e~d~~~V~e 257 (757)
|+|.++|.|+||++-|+|..- .+|.
T Consensus 149 i~p~~~~~t~vty~~~~Dp~G-~iP~ 173 (197)
T cd08869 149 IEPCGSGKSRVTHICRVDLRG-RSPE 173 (197)
T ss_pred EEECCCCCeEEEEEEEECCCC-CCCc
Confidence 999999999999999998643 4564
No 14
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=98.88 E-value=2.2e-08 Score=116.74 Aligned_cols=152 Identities=24% Similarity=0.378 Sum_probs=119.8
Q ss_pred eeeeeeeeEEeeChhhhhhhhcCcc----hhhhhCccceeeeeeccCCCCeeeeeeehhc--ccccccccceeEEEEeee
Q 004383 118 GVAARACGLVSLDPTKIAEILKDCP----SWFRDCRCLDVLSVIPTGNGGTIELIYMQTY--APTTLAAARDFWLLRYST 191 (757)
Q Consensus 118 ~eAsRa~glV~m~~~~LVe~lmD~~----~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~--v~SpLvp~Re~~fLRYck 191 (757)
+-+=|+.|+|...|.+|.|.+|+.+ +|-..|-..++|+.+. |...++|-.++ .....+-+|||+++||-+
T Consensus 226 ~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID----~htdI~Y~~~~~~~~~~~ispRDFV~~Rywr 301 (719)
T PLN00188 226 SRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVD----GHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 301 (719)
T ss_pred CceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEec----CCeEEEEEEeccccccCccCcceeEEEEEEE
Confidence 3677999999999999999999666 8988888889999875 55677776664 344667779999999999
Q ss_pred eeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecC--C--CceEEEEEEeeeecCCcccccchhhhchhH
Q 004383 192 SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCE--G--GGSIIHIVDHVDLDAWSVPEVLRPLYESSK 267 (757)
Q Consensus 192 ql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~--n--G~SkVtwVeH~e~d~~~V~el~RpL~~Sg~ 267 (757)
..+||+++|+=+|+.. |.-|+...|+|++..|+||+|.|++ + -.|.|+|+-|+|+.-|.. -|+|-..-..
T Consensus 302 r~eDGsYvil~~Sv~H----p~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~--~y~~s~~~~~ 375 (719)
T PLN00188 302 RNDDGSYVVLFRSREH----ENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV--GYIPSFQQHC 375 (719)
T ss_pred EcCCCcEEEeeeeeec----CCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccc--ccCccccccc
Confidence 9999999999999874 4456678999999999999999964 3 379999999999999975 3444443334
Q ss_pred HHHHHHHHHHHH
Q 004383 268 ILAQKMTMAAMR 279 (757)
Q Consensus 268 afgarrw~aaLr 279 (757)
.+.-=.-+|+||
T Consensus 376 ~l~mL~~VAgLr 387 (719)
T PLN00188 376 LLQMLNSVAGLR 387 (719)
T ss_pred hHHHHHHHHHHH
Confidence 343333445555
No 15
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.81 E-value=2.5e-07 Score=94.71 Aligned_cols=190 Identities=18% Similarity=0.202 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCCceeeeeeeeEEeeChhhhh-hhhcCc---chhhhh
Q 004383 72 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIA-EILKDC---PSWFRD 147 (757)
Q Consensus 72 ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~~~eAsRa~glV~m~~~~LV-e~lmD~---~~W~~~ 147 (757)
....++|||++|.++.... -.|.-.-..|.| |-++.......+-+=|.-+.|...+..|. +.|.|. .+|...
T Consensus 6 ~~~~~~~~~~~~~~~l~~~-~~W~l~~~~~~g---i~V~s~~~~~~~~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~ 81 (209)
T cd08906 6 YVRQGKEALAVVEQILAQE-ENWKFEKNNDNG---DTVYTLEVPFHGKTFILKAFMQCPAELVYQEVILQPEKMVLWNKT 81 (209)
T ss_pred HHHHHHHHHHHHHHHhhcc-cCCEEEEecCCC---CEEEEeccCCCCcEEEEEEEEcCCHHHHHHHHHhChhhccccCcc
Confidence 4567999999999998764 479853112222 11221112222234488888888888885 677665 568888
Q ss_pred CccceeeeeeccCCCCeeeeeeehhccccc--ccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeee
Q 004383 148 CRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEM 225 (757)
Q Consensus 148 f~~i~vl~~~~~g~~G~lqLm~~e~~v~Sp--Lvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~r 225 (757)
|...++|.-+... -.+.| +.-.|.+ .+..|||-.+|+.++.++| ++++-.|++. +..|+...|+|.+.
T Consensus 82 ~~~~~vi~~~~~~----~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~----~~~P~~~~~VR~~~ 151 (209)
T cd08906 82 VSACQVLQRVDDN----TLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTH----SHKPPLSKYVRGEN 151 (209)
T ss_pred chhhhheeeccCC----cEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEec----CCCCCCCCeEEEee
Confidence 8888888877642 34556 6666664 6899999999999998888 6777788864 24566779999999
Q ss_pred cccceeeeec--CCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH
Q 004383 226 LASGFLIRPC--EGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 279 (757)
Q Consensus 226 lPSGcLIq~~--~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr 279 (757)
.++|++|++. .+|.|+|||+-|+|..- .+| +.+++..+.=+.--++..||
T Consensus 152 ~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G-~lP---~~lvN~~~~~~~~~~~~~LR 203 (209)
T cd08906 152 GPGGFVVLKSASNPSVCTFIWILNTDLKG-RLP---RYLIHQSLAATMFEFASHLR 203 (209)
T ss_pred eccEEEEEECCCCCCceEEEEEEecCCCC-CCC---HHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 57799999999998766 455 35565555444455566664
No 16
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=98.62 E-value=1.4e-06 Score=89.14 Aligned_cols=176 Identities=18% Similarity=0.260 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceee-e-cCCCceeeeeeeeEEeeChhhhhhhhcC---cchhhhh
Q 004383 73 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA-V-SRNCSGVAARACGLVSLDPTKIAEILKD---CPSWFRD 147 (757)
Q Consensus 73 l~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~-~-~~~~~~eAsRa~glV~m~~~~LVe~lmD---~~~W~~~ 147 (757)
.++|+.+-+++++--+-.+-.|-.- |...+. .+. . ++.+.|---|.-|+|.-.+..|++.+-+ +.+|-+.
T Consensus 4 ~~~~~~~~~~~~~y~~~~~~~Wkl~---k~~~~~--~v~~k~~~ef~gkl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 4 ASKTTKLQNTLIQYHSILEEEWRVA---KKSKDV--TVWRKPSEEFGGYLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred HHHHHHHHHHHHHhccccccCcEEE---EeCCCE--EEEEecCCcCCCceEEEEEEecCCHHHHHHHHhcccchhcccch
Confidence 4678888888998777788999774 221110 111 1 3356667778889999999999999999 5599999
Q ss_pred CccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecc
Q 004383 148 CRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 227 (757)
Q Consensus 148 f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlP 227 (757)
+-..++|+-|..+ ++-.-|.-.-.+-+++-+|||.-+||+++.+||. +.|=+|++.- .+| +.|+|++..|
T Consensus 79 v~~~~Iie~Id~d---t~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~----~~p--pg~VRgen~p 148 (202)
T cd08902 79 MTSMDIIEEFEEN---CCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYE----EAR--PNFVRGFNHP 148 (202)
T ss_pred hhheeHhhhhcCC---cEEEEEEcccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCC----CCC--CCeEeecccc
Confidence 9999999887753 3332366667888899999999999999999998 7777887752 223 2899999999
Q ss_pred cceeeeecCCC--ceEEEEEEeeeecCCcccccchhhhchhH
Q 004383 228 SGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSK 267 (757)
Q Consensus 228 SGcLIq~~~nG--~SkVtwVeH~e~d~~~V~el~RpL~~Sg~ 267 (757)
+||+++|.+|| .|+.||+-++|+.-| +| +-++++.+
T Consensus 149 ~g~i~~Pl~~~p~k~~~t~~lq~DLkG~-LP---qsiIdq~~ 186 (202)
T cd08902 149 CGWFCVPLKDNPSHSLLTGYIQTDLRGM-LP---QSAVDTAM 186 (202)
T ss_pred cEEEEEECCCCCCceEEEEEEEecCCCC-cc---HHHHHHHh
Confidence 99999999998 577789999888755 33 34554444
No 17
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.61 E-value=8.1e-07 Score=91.10 Aligned_cols=170 Identities=22% Similarity=0.309 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceee--ecCCCceeeeeeeeEEeeChhhhhhh-hcCcchhhhhC
Q 004383 72 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA--VSRNCSGVAARACGLVSLDPTKIAEI-LKDCPSWFRDC 148 (757)
Q Consensus 72 ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~--~~~~~~~eAsRa~glV~m~~~~LVe~-lmD~~~W~~~f 148 (757)
.-..-++.++++++-|+..-=-|+.. +.++.+-+.- .+.|..--.-|....+.-.+.+|+.. +-++.+|...|
T Consensus 7 ~~~~~~~~~~~l~~e~~~k~k~w~~~----~~~~~~el~~~k~~~gs~l~~~r~~~~i~a~~~~vl~~lld~~~~Wd~~~ 82 (204)
T cd08908 7 YHHFLQDCVDGLFKEVKEKFKGWVSY----STSEQAELSYKKVSEGPPLRLWRTTIEVPAAPEEILKRLLKEQHLWDVDL 82 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccc----CCCCcEEEEEeccCCCCCcEEEEEEEEeCCCHHHHHHHHHhhHHHHHHHh
Confidence 33456778888888887666667764 2233332211 23444445667777888888888744 44567799999
Q ss_pred ccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeee-eeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecc
Q 004383 149 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYST-SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 227 (757)
Q Consensus 149 ~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYck-ql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlP 227 (757)
-..++|+-++.. -.+.|..+-.|-| +|.|||.++|-.+ +.++|..+|+-.|++... .| . .++|++.+-
T Consensus 83 ~e~~vIe~ld~~----~~I~Yy~~~~PwP-~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~----~P-~-~~VR~~~~~ 151 (204)
T cd08908 83 LDSKVIEILDSQ----TEIYQYVQNSMAP-HPARDYVVLRTWRTNLPKGACALLATSVDHDR----AP-V-AGVRVNVLL 151 (204)
T ss_pred hheEeeEecCCC----ceEEEEEccCCCC-CCCcEEEEEEEEEEeCCCCeEEEEEeecCccc----CC-c-CceEEEEEe
Confidence 999999988743 3578888899988 6999999997665 478999999999987532 22 2 368999999
Q ss_pred cceeeeecCCCceEEEEEEeeeecCCcccc
Q 004383 228 SGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 257 (757)
Q Consensus 228 SGcLIq~~~nG~SkVtwVeH~e~d~~~V~e 257 (757)
+|++|+|+++|.|+||.+-|+|--- .+|.
T Consensus 152 ~~w~i~P~g~g~t~vtyi~~~DPgG-~iP~ 180 (204)
T cd08908 152 SRYLIEPCGSGKSKLTYMCRIDLRG-HMPE 180 (204)
T ss_pred eEEEEEECCCCcEEEEEEEEeCCCC-CCcH
Confidence 9999999999999999999998543 4553
No 18
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.55 E-value=1.4e-06 Score=89.35 Aligned_cols=126 Identities=22% Similarity=0.310 Sum_probs=98.5
Q ss_pred eeeeEEeeChhhhhhhhcCc---chhhhhCccceeeeeeccCCCCeeeeeeehhccccccc-ccceeEEEEeeeeeCCCc
Q 004383 122 RACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLA-AARDFWLLRYSTSLEDGS 197 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLv-p~Re~~fLRYckql~~G~ 197 (757)
|.-+.|...+.+|.+.|.|. .+|..++...++++.+... ..++|.....|=|+. +.|||..+|-....+++.
T Consensus 48 ~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d----~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~ 123 (205)
T cd08874 48 LGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTED----ICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELS 123 (205)
T ss_pred EEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCC----eEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcE
Confidence 34557888999999999885 5699999999999976643 467777777666554 999999999555544554
Q ss_pred EEEEEeecCCCCCCCCCCCCC-ccceeeecccceeeeec---CCCceEEEEEEeeeecCCccc
Q 004383 198 LVVCERSLTSSTGGPTGPPPS-SFVRAEMLASGFLIRPC---EGGGSIIHIVDHVDLDAWSVP 256 (757)
Q Consensus 198 wvVvDvSld~~~~~~~~~~~~-~f~r~~rlPSGcLIq~~---~nG~SkVtwVeH~e~d~~~V~ 256 (757)
. |.=.|++. +..|+.. .|+|.+.+++|++|+|+ ++|.|+||.+-|+|.--..+|
T Consensus 124 v-i~~~SV~~----~~~P~~~~~~VR~~~~~~gw~i~P~~~~g~~~t~vty~~q~DPggg~iP 181 (205)
T cd08874 124 V-VACQSVYD----KSMPEPGRSLVRGEILPSAWILEPVTVEGNQYTRVIYIAQVALCGPDVP 181 (205)
T ss_pred E-EEEEeccc----ccCCCCCCCeEEeeeEeeeEEEEECccCCCCcEEEEEEEEECCCCCCCC
Confidence 4 65577764 3445554 79999999999999999 999999999999998755676
No 19
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=98.37 E-value=1.2e-05 Score=82.48 Aligned_cols=170 Identities=24% Similarity=0.343 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceee--ecCCCceeeeeeeeEEe-eChhhhhhhhcCcchhhhhC
Q 004383 72 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA--VSRNCSGVAARACGLVS-LDPTKIAEILKDCPSWFRDC 148 (757)
Q Consensus 72 ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~--~~~~~~~eAsRa~glV~-m~~~~LVe~lmD~~~W~~~f 148 (757)
.-..-++.+.+|++-++...--|+.. ..++.+.+.. .+.|+.---=|.+.-|. ..+.-|-++|.|+..|-..+
T Consensus 7 ~~~~l~~~~~~~lre~~ek~kgW~~~----~~~~~vev~~kk~~d~~~l~lwk~s~ei~~~p~~vl~rvL~dR~~WD~~m 82 (205)
T cd08907 7 LRAYLEDNVQCLLREASERFKGWHSA----PGPDNTELACKKVGDGHPLRLWKVSTEVEAPPSVVLQRVLRERHLWDEDL 82 (205)
T ss_pred HHHHHHHHHHHHHHHhhhccCCceee----cCCCCcEEEEEeCCCCCceEEEEEEEEecCCCHHHHHHHhhchhhhhHHH
Confidence 34557888999999999999999885 2233332211 12222222223333332 23456679999999999998
Q ss_pred ccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeee-eeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecc
Q 004383 149 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYST-SLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 227 (757)
Q Consensus 149 ~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYck-ql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlP 227 (757)
-.-.+|+.+.. +. ++.|--+--| +..|.|||.+||.-+ .+..|.-+|+.+|++... .|+... +|+--+=
T Consensus 83 ~e~~~Ie~Ld~-n~---dI~yY~~~~~-~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~----~pp~~g-VRa~~l~ 152 (205)
T cd08907 83 LHSQVIEALEN-NT---EVYHYVTDSM-APHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDN----PQLEAG-VRAVLLT 152 (205)
T ss_pred HhhhhheeecC-CC---EEEEEEecCC-CCCCCceEEEEEEEccCCCCCCEEEEEecccCCc----CCCCCC-eEEEEEe
Confidence 77777776652 22 3333333333 557999999999864 467889999999998643 233334 9999999
Q ss_pred cceeeeecCCCceEEEEEEeeeecCCccc
Q 004383 228 SGFLIRPCEGGGSIIHIVDHVDLDAWSVP 256 (757)
Q Consensus 228 SGcLIq~~~nG~SkVtwVeH~e~d~~~V~ 256 (757)
|||||+|++.|.|+||.+-|+|..-+ .|
T Consensus 153 sgYlIep~g~g~s~ltyi~rvD~rG~-~P 180 (205)
T cd08907 153 SQYLIEPCGMGRSRLTHICRADLRGR-SP 180 (205)
T ss_pred ccEEEEECCCCCeEEEEEEEeCCCCC-Cc
Confidence 99999999999999999999987554 44
No 20
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.34 E-value=1.4e-05 Score=81.82 Aligned_cols=176 Identities=16% Similarity=0.219 Sum_probs=122.9
Q ss_pred cCCCcceeecCCCCCCCCccceee-ecCCCceeeeeeeeEEe-eChhhhhhhhcCc---chhhhhCccceeeeeeccCCC
Q 004383 88 TGTAVDWVQMIGMKPGPDSIGIVA-VSRNCSGVAARACGLVS-LDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNG 162 (757)
Q Consensus 88 t~~~plWv~~pg~k~gpdsig~~~-~~~~~~~eAsRa~glV~-m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~g~~ 162 (757)
+-+...|-..-+.+ -|-+.. ..++.....=|+.+.+. ..+..+.+.|+|. .+|...+-. ++...+.
T Consensus 21 ~~~~~~W~l~~~~~----~i~Vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~--- 91 (207)
T cd08910 21 ALDGAAWELLVESS----GISIYRLLDEQSGLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECD--- 91 (207)
T ss_pred CCCCCCeEEEEecC----CeEEEEeccCCCCcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCC---
Confidence 34446798863322 111221 13444555789889988 7999999999994 568877654 4443332
Q ss_pred CeeeeeeehhcccccccccceeEEEEeee-eeCCC--cEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecCCCc
Q 004383 163 GTIELIYMQTYAPTTLAAARDFWLLRYST-SLEDG--SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGG 239 (757)
Q Consensus 163 G~lqLm~~e~~v~SpLvp~Re~~fLRYck-ql~~G--~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~ 239 (757)
| ..++|..+..|-| +..|||.++|-.. ...+| .|+|+..|.+. |..|....++|.+..-+|++|++..+++
T Consensus 92 ~-~~i~y~~~k~PwP-vs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~----p~~P~~~~~VRv~~~~~~~~i~p~~~~~ 165 (207)
T cd08910 92 G-ETVIYWEVKYPFP-LSNRDYVYIRQRRDLDVEGRKIWVILARSTSL----PQLPEKPGVIRVKQYKQSLAIESDGKKG 165 (207)
T ss_pred C-CEEEEEEEEcCCC-CCCceEEEEEEeccccCCCCeEEEEEecCCCC----CCCCCCCCCEEEEEEEEEEEEEeCCCCc
Confidence 3 3678999999999 9999999996443 33344 58888887753 3455567899999999999999999999
Q ss_pred eEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHh
Q 004383 240 SIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 282 (757)
Q Consensus 240 SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~e 282 (757)
|+|+++-|.|-. .++|. -+++.-...+.-.++..|| .|+
T Consensus 166 t~i~~~~~~DPg-G~IP~---wlvN~~~~~~~~~~l~~l~ka~~ 205 (207)
T cd08910 166 SKVFMYYFDNPG-GMIPS---WLINWAAKNGVPNFLKDMQKACQ 205 (207)
T ss_pred eEEEEEEEeCCC-CcchH---HHHHHHHHHhhHHHHHHHHHHHh
Confidence 999999999853 34652 3555555556777888876 554
No 21
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.33 E-value=4.3e-05 Score=77.92 Aligned_cols=189 Identities=18% Similarity=0.247 Sum_probs=140.2
Q ss_pred HHHHHHhhcCCC--cceeecCCCCCCCCc-cceeee-cCCCceeeeeeeeEE-eeChhhhhhhhcCc---chhhhhCccc
Q 004383 80 LAEFLSKATGTA--VDWVQMIGMKPGPDS-IGIVAV-SRNCSGVAARACGLV-SLDPTKIAEILKDC---PSWFRDCRCL 151 (757)
Q Consensus 80 m~Efl~~At~~~--plWv~~pg~k~gpds-ig~~~~-~~~~~~eAsRa~glV-~m~~~~LVe~lmD~---~~W~~~f~~i 151 (757)
+.||+...+..+ ..|-..-. |.+|.. |-+..- ..|...-.=|+.+++ .+.+..|.+.|+|. .+|...|-..
T Consensus 8 ~~~~~~~~~~~~~~~~W~~~~~-k~~~~~~i~vy~r~~~~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~ 86 (209)
T cd08870 8 LRDLVQELQEGAEGQAWQQVMD-KSTPDMSYQAWRRKPKGTGLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEH 86 (209)
T ss_pred HHHHHHHhcCcCCCCcceEhhh-ccCCCceEEEEecccCCCCceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeE
Confidence 456666555553 57988743 334331 332221 334455678999988 56999999999994 5699999888
Q ss_pred eeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeeccccee
Q 004383 152 DVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFL 231 (757)
Q Consensus 152 ~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcL 231 (757)
++|+..+. .| ..++|..+..|-|+ -.||+...|-..+..+|..+|+=.|++. +..|.. .++|.+..=||++
T Consensus 87 ~~le~~~~--~~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~~~~~~~~i~~~sv~~----~~~P~~-~~vRv~~~~~~~~ 157 (209)
T cd08870 87 ETLEEDEK--SG-TEIVRWVKKFPFPL-SDREYVIARRLWESDDRSYVCVTKGVPY----PSVPRS-GRKRVDDYESSLV 157 (209)
T ss_pred EEEEecCC--CC-cEEEEEEEECCCcC-CCceEEEEEEEEEcCCCEEEEEEeCCcC----CCCCCC-CcEEEEEEEeEEE
Confidence 88876432 13 57899999999988 8999999987777778999888877764 334444 7899999999999
Q ss_pred eeec--CCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHh
Q 004383 232 IRPC--EGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 282 (757)
Q Consensus 232 Iq~~--~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~e 282 (757)
|++. .+|.++++++-|.+- ...+| .-|++.....|.-.++..|| .|+
T Consensus 158 i~p~~~~~~~t~~~~~~~~dp-~G~IP---~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 158 IRAVKGDGQGSACEVTYFHNP-DGGIP---RELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEecCCCCceEEEEEEEECC-CCCCC---HHHHHHHHHhhhHHHHHHHHHHHh
Confidence 9999 789999999999973 33577 35677777778888999886 664
No 22
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.15 E-value=0.00017 Score=73.71 Aligned_cols=194 Identities=16% Similarity=0.197 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceee-ecCCCceeeeeeeeEEeeChhhhhhhhcCcch---hhhhC
Q 004383 73 LAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA-VSRNCSGVAARACGLVSLDPTKIAEILKDCPS---WFRDC 148 (757)
Q Consensus 73 l~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~-~~~~~~~eAsRa~glV~m~~~~LVe~lmD~~~---W~~~f 148 (757)
++=+...+.|+.+--+. +-.|...-+. +.+-++. ..++....+-|.-|.+.-++.++.++|.|.+. |...|
T Consensus 4 ~~~~~~~~~~~~~~l~~-~~~W~~~~~~----~~i~v~~r~~~~~~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~ 78 (215)
T cd08877 4 IRQEATIMQENLKDLDE-SDGWTLQKES----EGIRVYYKFEPDGSLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFC 78 (215)
T ss_pred HHHHHHHHHHHHhcccC-CCCcEEeccC----CCeEEEEEeCCCCCEEEEEEEEEecCChhHeEEEEehhhhHhhhcccc
Confidence 44456677888887776 5679886322 1121221 12333467889999999999999999999865 66666
Q ss_pred ccceeeeeeccCCCCeeeeeeehhcccccccccceeEEE-Eeeeee-CCCcEEEEEeecCCCCC-----CCCCCCCC-cc
Q 004383 149 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLL-RYSTSL-EDGSLVVCERSLTSSTG-----GPTGPPPS-SF 220 (757)
Q Consensus 149 ~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fL-RYckql-~~G~wvVvDvSld~~~~-----~~~~~~~~-~f 220 (757)
...+++..+... -++.|..+-+|=| +..||+.+. +.+..+ ++|..+|+=.|++.... +...|+.+ .+
T Consensus 79 ~~~~~l~~~~~~----~~v~y~~~~~PwP-v~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~ 153 (215)
T cd08877 79 IRSKKVKQLGRA----DKVCYLRVDLPWP-LSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKG 153 (215)
T ss_pred eeeEEEeecCCc----eEEEEEEEeCceE-ecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCc
Confidence 666666665432 3677888888888 888999985 556677 89999999999985321 11234455 89
Q ss_pred ceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH
Q 004383 221 VRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR 279 (757)
Q Consensus 221 ~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr 279 (757)
+|.+...+|++|+|+++|.|+|+++-|+|-.-+-||.= |++...--.....+..||
T Consensus 154 vR~~~~~~~~~i~p~~~~~t~v~~~~~~DP~g~~IP~~---liN~~~k~~~~~~~~~l~ 209 (215)
T cd08877 154 VRRIIKYYGFVITPISPTKCYLRFVANVDPKMSLVPKS---LLNFVARKFAGLLFEKIQ 209 (215)
T ss_pred eEEEEecceEEEEEcCCCCeEEEEEEEcCCCcccCCHH---HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999976333327743 332222223444555554
No 23
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.11 E-value=6.4e-05 Score=74.73 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=102.8
Q ss_pred eeeeeeeEEeeChhhhhhhhcCcch---hhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeee-C
Q 004383 119 VAARACGLVSLDPTKIAEILKDCPS---WFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL-E 194 (757)
Q Consensus 119 eAsRa~glV~m~~~~LVe~lmD~~~---W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql-~ 194 (757)
-.-|..++|...+.++.+++.|.+. |...|...++++-+.. + -.++|..+..|=| +..|||.+.|..... +
T Consensus 41 ~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~---~-~~i~~~~~~~p~p-vs~Rdfv~~~~~~~~~~ 115 (195)
T cd08876 41 KEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDD---N-ERSVYTVIDLPWP-VKDRDMVLRSTTEQDAD 115 (195)
T ss_pred EEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCC---C-cEEEEEEEecccc-cCCceEEEEEEEEEcCC
Confidence 4569999999999999999999765 5555666666665432 2 3456666666655 789999987654433 3
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHH
Q 004383 195 DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMT 274 (757)
Q Consensus 195 ~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw 274 (757)
+|..+|.=.|.+.. .|....|+|.+.+.+|+.|++.++|.|+|+++-|++..-+-..-+.+.+... +....
T Consensus 116 ~~~~~i~~~s~~~~-----~P~~~~~vR~~~~~~~~~i~~~~~~~t~vt~~~~~dp~g~iP~~lv~~~~~~----~~~~~ 186 (195)
T cd08876 116 DGSVTITLEAAPEA-----LPEQKGYVRIKTVEGQWTFTPLGNGKTRVTYQAYADPGGSIPGWLANAFAKD----APYNT 186 (195)
T ss_pred CCEEEEEeecCCcc-----CCCCCCeEEceeceeeEEEEECCCCeEEEEEEEEeCCCCCCCHHHHHHHHHH----HHHHH
Confidence 67777766665532 2233478999999999999999999999999999998754333344433322 44566
Q ss_pred HHHHH
Q 004383 275 MAAMR 279 (757)
Q Consensus 275 ~aaLr 279 (757)
+.+||
T Consensus 187 l~~l~ 191 (195)
T cd08876 187 LENLR 191 (195)
T ss_pred HHHHH
Confidence 67775
No 24
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.10 E-value=2.9e-05 Score=81.35 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=119.7
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCCceeeeeeeeEEeeChhhhhhhhcCc
Q 004383 62 PQRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKDC 141 (757)
Q Consensus 62 ~~~d~~~~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~~~eAsRa~glV~m~~~~LVe~lmD~ 141 (757)
-|.|-+|+..|.--=.+||++|.. +..|.-.-..+ -|-+.. .++-..-+=|.-+.|...+.+|.+.|.|.
T Consensus 30 ~~~~~~~~~~~~~~~~~~l~~l~~-----~~~W~l~~~k~----gIkVyt-r~~s~~l~fk~e~~vd~s~~~v~dlL~D~ 99 (235)
T cd08873 30 VAWDRSNQMYLSYGNVTALKRLAA-----KSDWTVASSTT----SVTLYT-LEQDGVLSFCVELKVQTCASDAFDLLSDP 99 (235)
T ss_pred cccCccccEEEeeCCHHHHhhccc-----cCCCEEEEcCC----CEEEEE-ecCCCceEEEEEEEecCCHHHHHHHHhCc
Confidence 357777665555555677777654 56787652221 111111 11111123355566888999999999996
Q ss_pred c---hhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCC--cEEEEEeecCCCCCCCCCCC
Q 004383 142 P---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDG--SLVVCERSLTSSTGGPTGPP 216 (757)
Q Consensus 142 ~---~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G--~wvVvDvSld~~~~~~~~~~ 216 (757)
+ +|...+..+++|+-+.. ...++|..+-.|. -+..|||.++|+.++..++ ..+|.=.|+.. +..|+
T Consensus 100 ~~R~~WD~~~~e~evI~~id~----d~~iyy~~~p~Pw-Pvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h----~~~Pp 170 (235)
T cd08873 100 FKRPEWDPHGRSCEEVKRVGE----DDGIYHTTMPSLT-SEKPNDFVLLVSRRKPATDGDPYKVAFRSVTL----PRVPQ 170 (235)
T ss_pred chhhhhhhcccEEEEEEEeCC----CcEEEEEEcCCCC-CCCCceEEEEEEEEeccCCCCeEEEEEeeeec----ccCCC
Confidence 5 58888888899998774 3456777666666 4789999999999984433 37777777652 33556
Q ss_pred CCccceeeecccceeeeecCCCceEEEEEEeee
Q 004383 217 PSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVD 249 (757)
Q Consensus 217 ~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e 249 (757)
.+.|+|++.+=.|++|+|.++|.|+||.+-|+|
T Consensus 171 ~kgyVR~~~~~ggW~I~p~~~~~t~VtY~~~~d 203 (235)
T cd08873 171 TPGYSRTEVACAGFVIRQDCGTCTEVSYYNETN 203 (235)
T ss_pred CCCeEEEEEEeeeEEEEECCCCcEEEEEEEEcC
Confidence 679999999999999999999999999999986
No 25
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.93 E-value=9.1e-05 Score=77.49 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHhhcCC--CcceeecCCCCCCCCccceeee---cC--CCceeeeeeeeEEe-eChhhhhhhhcCcc--
Q 004383 73 LAVAEETLAEFLSKATGT--AVDWVQMIGMKPGPDSIGIVAV---SR--NCSGVAARACGLVS-LDPTKIAEILKDCP-- 142 (757)
Q Consensus 73 l~iAe~am~Efl~~At~~--~plWv~~pg~k~gpdsig~~~~---~~--~~~~eAsRa~glV~-m~~~~LVe~lmD~~-- 142 (757)
..--++-++|.+++|..+ +..|--.-. .=|+... .. |.....=|+.++|. ..+..+.+.|.|.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~W~l~~~------~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r 78 (235)
T cd08872 5 SPEVDEKVQEQLTYALEDVGADGWQLFAE------EGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDVR 78 (235)
T ss_pred hHHHHHHHHHHHHHHHccCCCCCCEEEEe------CCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhhH
Confidence 344567788999999654 445765421 1122111 11 12223568888888 88899999999975
Q ss_pred -hhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCC-------CcEEEEEeecCCCCCCCCC
Q 004383 143 -SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLED-------GSLVVCERSLTSSTGGPTG 214 (757)
Q Consensus 143 -~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~-------G~wvVvDvSld~~~~~~~~ 214 (757)
+|...|-..++|+-++.+ ..+.|..+-.|=| +..|||.++|+.++.++ +.|+||-.|++. +..
T Consensus 79 ~~Wd~~~~~~~vie~l~~~----~~I~Y~~~k~PwP-vs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h----~~~ 149 (235)
T cd08872 79 MDWETTLENFHVVETLSQD----TLIFHQTHKRVWP-AAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDH----DSA 149 (235)
T ss_pred HHHHhhhheeEEEEecCCC----CEEEEEEccCCCC-CCCcEEEEEEEEEecCccccccCCCeEEEEEecccC----ccC
Confidence 488888888888877642 3567888888889 69999999999999876 789999999874 345
Q ss_pred CCCCccceeee---cccceeeeec--------CCCceEEEEEEeeeecCC
Q 004383 215 PPPSSFVRAEM---LASGFLIRPC--------EGGGSIIHIVDHVDLDAW 253 (757)
Q Consensus 215 ~~~~~f~r~~r---lPSGcLIq~~--------~nG~SkVtwVeH~e~d~~ 253 (757)
|+...|+|++. +=.|.+|.+= +||.|+||++-|+|---|
T Consensus 150 P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~~~~~~ity~~~~dPgG~ 199 (235)
T cd08872 150 PLNNKCVRAKLTVAMICQTFVSPPDGNQEITRDNILCKITYVANVNPGGW 199 (235)
T ss_pred CCCCCeEEEEEEeeeeeeeeeecCCCcccccCCCCeEEEEEEEEeCCCCC
Confidence 56668999875 2333333331 588999999999985544
No 26
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=97.92 E-value=9.3e-05 Score=63.37 Aligned_cols=101 Identities=13% Similarity=0.113 Sum_probs=81.7
Q ss_pred CCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeE
Q 004383 648 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAV 727 (757)
Q Consensus 648 ~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf 727 (757)
|++|++++. +=.++|+|.+++++|+++.+++.+.+...-..+..+....+.+.++.++|-...+.-....+.|+++
T Consensus 1 p~~i~i~d~----~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g~~~ 76 (104)
T PF13426_consen 1 PDGIFILDP----DGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGSWSGEVRLRRKDGETF 76 (104)
T ss_dssp -SEEEEEET----TSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSSEEEEEEEEETTSEEE
T ss_pred CEEEEEECC----cCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCceeEEEEEEcCCCCEE
Confidence 566666654 3579999999999999999999999998888877777787888888887766666777778999998
Q ss_pred EEcceEEeEeecCCCCeeEEEEEecC
Q 004383 728 SYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 728 ~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
++ ...+-.+.|++|+..+..++|.|
T Consensus 77 ~~-~~~~~~i~~~~g~~~~~i~~~~D 101 (104)
T PF13426_consen 77 WV-EVSASPIRDEDGEITGIIGIFRD 101 (104)
T ss_dssp EE-EEEEEEEEETTSSEEEEEEEEEE
T ss_pred EE-EEEEEEEECCCCCEEEEEEEEEE
Confidence 88 56888999999999998888754
No 27
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=97.87 E-value=0.00025 Score=72.42 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=109.9
Q ss_pred ceeeeeeeeEE-eeChhhhhhhhcCcc---hhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeee
Q 004383 117 SGVAARACGLV-SLDPTKIAEILKDCP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS 192 (757)
Q Consensus 117 ~~eAsRa~glV-~m~~~~LVe~lmD~~---~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckq 192 (757)
....=|+.+++ ...+..+++.|+|.+ +|...+-..++|+..... + ..++|..+..|-|+ -.||+.+.|-..+
T Consensus 43 ~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~--~-~~i~y~~~~~P~P~-s~RD~V~~r~~~~ 118 (207)
T cd08911 43 GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPET--G-SEIIYWEMQWPKPF-ANRDYVYVRRYII 118 (207)
T ss_pred CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCC--C-CEEEEEEEECCCCC-CCccEEEEEEEEE
Confidence 33456776655 788999999999964 688888888888764321 2 47899999999996 8999999988777
Q ss_pred eC-CCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecC---CCceEEEEEEeeeecCC-cccccchhhhchhH
Q 004383 193 LE-DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCE---GGGSIIHIVDHVDLDAW-SVPEVLRPLYESSK 267 (757)
Q Consensus 193 l~-~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~---nG~SkVtwVeH~e~d~~-~V~el~RpL~~Sg~ 267 (757)
.+ +|.++|+-.|++. |..|....++|.....+|++|++.. +++|+|+++-|. |+. .+|. -+++.-.
T Consensus 119 ~~~~~~~~i~~~sv~h----p~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~--dPgG~IP~---~lvN~~~ 189 (207)
T cd08911 119 DEENKLIVIVSKAVQH----PSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFD--NPGVNIPS---YITSWVA 189 (207)
T ss_pred cCCCCEEEEEEecCCC----CCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEe--CCCCccCH---HHHHHHH
Confidence 65 4677888888874 3345556899999999999999994 678999988885 655 5773 2333333
Q ss_pred HHHHHHHHHHHH
Q 004383 268 ILAQKMTMAAMR 279 (757)
Q Consensus 268 afgarrw~aaLr 279 (757)
.-+.-.|+.-|+
T Consensus 190 ~~~~~~~l~~l~ 201 (207)
T cd08911 190 MSGMPDFLERLR 201 (207)
T ss_pred HhhccHHHHHHH
Confidence 334445555554
No 28
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=97.72 E-value=0.0003 Score=73.95 Aligned_cols=180 Identities=20% Similarity=0.292 Sum_probs=125.4
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCCceeeeeeeeEEeeChhhhhhhhcC
Q 004383 61 HPQRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPTKIAEILKD 140 (757)
Q Consensus 61 ~~~~d~~~~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~~~eAsRa~glV~m~~~~LVe~lmD 140 (757)
+-|.|-+|+..|.---.+||.++.. +..|.-.-+-+ | |-+.. .++-.--+=|.-..+...+.+|.+.|.|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~a~-----~~~W~l~~dkd-g---IkVyt-r~~s~~l~fk~e~~vdvs~~~l~~LL~D 99 (236)
T cd08914 30 CIHWDIGNQASLSDSNVEALKKLAA-----KSGWEVTSTVE-K---IKIYT-LEEHDVLSVWVEKHVKRPAHLAYRLLSD 99 (236)
T ss_pred ecccCCCceEEEeeCCHHHhhhhcc-----cCCCEEEEccC-C---EEEEE-ecCCCcEEEEEEEEEcCCHHHHHHHHhC
Confidence 4467888766555555666666543 56787752211 1 11111 1111123456666888999999999999
Q ss_pred cc---hhhhhCccceeeeeeccCCCCeeeeeeehhcccc-cccccceeEEEEeeeeeC-CCc-EEEEEeecCCCCCCCCC
Q 004383 141 CP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPT-TLAAARDFWLLRYSTSLE-DGS-LVVCERSLTSSTGGPTG 214 (757)
Q Consensus 141 ~~---~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~S-pLvp~Re~~fLRYckql~-~G~-wvVvDvSld~~~~~~~~ 214 (757)
.+ +|...|...++|+-++.... +|...-.|- |+ ..|||-++|=..+.. +|. ++|.=.|+.. +..
T Consensus 100 ~~~r~~Wd~~~~e~~vI~qld~~~~-----vY~~~~pPw~Pv-k~RD~V~~~s~~~~~~dg~~~~I~~~SVp~----~~~ 169 (236)
T cd08914 100 FTKRPLWDPHFLSCEVIDWVSEDDQ-----IYHITCPIVNND-KPKDLVVLVSRRKPLKDGNTYVVAVKSVIL----PSV 169 (236)
T ss_pred hhhhchhHHhhceEEEEEEeCCCcC-----EEEEecCCCCCC-CCceEEEEEEEEecCCCCCEEEEEEeeccc----ccC
Confidence 65 58889999999998874332 465554443 45 899999987776666 886 8888888764 446
Q ss_pred CCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhh
Q 004383 215 PPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPL 262 (757)
Q Consensus 215 ~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL 262 (757)
|+...|+|++.+=+|++|++.++|.|+||.+-|+| +..+|...-.+
T Consensus 170 Pp~kg~VRv~~~~~G~~I~pl~~~~~~VtY~~~~d--Pg~lp~~~~n~ 215 (236)
T cd08914 170 PPSPQYIRSEIICAGFLIHAIDSNSCTVSYFNQIS--ASILPYFAGNL 215 (236)
T ss_pred CCCCCcEEeEEEEEEEEEEEcCCCcEEEEEEEEcC--CccchheEEec
Confidence 67779999999999999999999999999999995 46666544433
No 29
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=97.61 E-value=0.0007 Score=71.34 Aligned_cols=176 Identities=20% Similarity=0.296 Sum_probs=115.1
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeec-CCCceeeeeeeeEEeeChhhhhhhhcC
Q 004383 62 PQRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVS-RNCSGVAARACGLVSLDPTKIAEILKD 140 (757)
Q Consensus 62 ~~~d~~~~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~-~~~~~eAsRa~glV~m~~~~LVe~lmD 140 (757)
-|.|-+|+..|.---.+|++-|. .+..|.-.-.. +-|-+.... ..+. +=|.-+.|...+.+|.+.|.|
T Consensus 34 ~~~~~~~~~~~~~~~~~~l~~l~-----~~~~W~l~~~~----~gI~Vyt~~~s~~~--~fK~e~~vd~s~e~v~~lL~D 102 (240)
T cd08913 34 VPWDPSNQVYLSYNNVSALKMLV-----AKDNWVLSSEK----NQVRLYTLEEDKFL--SFKVEMVVHVDAAQAFLLLSD 102 (240)
T ss_pred cccCccceeEEeecCHHHHHhhc-----ccCCCEEEEcc----CCEEEEEEeCCCcc--EEEEEEEEcCCHHHHHHHHhC
Confidence 35777765544443444544432 23458765221 111122111 1111 225567899999999999999
Q ss_pred cc---hhhhhCccceeeeeeccCCCCeeeeeeehhccc-ccccccceeEEEEeeeeeC-CC-cEEEEEeecCCCCCCCCC
Q 004383 141 CP---SWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAP-TTLAAARDFWLLRYSTSLE-DG-SLVVCERSLTSSTGGPTG 214 (757)
Q Consensus 141 ~~---~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~-SpLvp~Re~~fLRYckql~-~G-~wvVvDvSld~~~~~~~~ 214 (757)
.+ +|...|...++|+-+... . . +|...-.| ..-+..|||-.++...+.+ +| .++|+=.|+.- |..
T Consensus 103 ~~~r~~Wd~~~~e~~vIe~id~~---~-~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~----P~~ 173 (240)
T cd08913 103 LRRRPEWDKHYRSCELVQQVDED---D-A-IYHVTSPSLSGHGKPQDFVILASRRKPCDNGDPYVIALRSVTL----PTH 173 (240)
T ss_pred hhhhhhhHhhccEEEEEEecCCC---c-E-EEEEecCCCCCCCCCCeEEEEEEEEeccCCCccEEEEEEEeec----CCC
Confidence 75 588889888999988753 1 1 23332111 1257899999999886654 44 46676666553 445
Q ss_pred CCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccc
Q 004383 215 PPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVL 259 (757)
Q Consensus 215 ~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~ 259 (757)
|+...|+|.+.+..|++|++.++|.|+|+++-|++ +..+|...
T Consensus 174 Pp~kgyVR~~~~~ggw~i~p~~~~~t~vtY~~~~d--PG~LP~~~ 216 (240)
T cd08913 174 PPTPEYTRGETLCSGFCIWEESDQLTKVSYYNQAT--PGVLPYIS 216 (240)
T ss_pred CCCCCcEEeeecccEEEEEECCCCcEEEEEEEEeC--CccccHHH
Confidence 67789999999999999999999999999999998 33666433
No 30
>PF00989 PAS: PAS fold; InterPro: IPR013767 PAS domains are involved in many signalling proteins where they are used as a signal sensor domain []. PAS domains appear in archaea, bacteria and eukaryotes. Several PAS-domain proteins are known to detect their signal by way of an associated cofactor. Haeme, flavin, and a 4-hydroxycinnamyl chromophore are used in different proteins. The PAS domain was named after three proteins that it occurs in: Per- period circadian protein Arnt- Ah receptor nuclear translocator protein Sim- single-minded protein. PAS domains are often associated with PAC domains IPR001610 from INTERPRO. It appears that these domains are directly linked, and that together they form the conserved 3D PAS fold. The division between the PAS and PAC domains is caused by major differences in sequences in the region connecting these two motifs []. In human PAS kinase, this region has been shown to be very flexible, and adopts different conformations depending on the bound ligand []. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 2GJ3_A 4F3L_B 1XFN_A 1OTD_A 2PYR_A 1KOU_A 1XFQ_A 2ZOI_A 2ZOH_A 1OTA_A ....
Probab=97.06 E-value=0.0098 Score=51.71 Aligned_cols=107 Identities=19% Similarity=0.174 Sum_probs=79.3
Q ss_pred HHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 004383 641 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 719 (757)
Q Consensus 641 ~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR 719 (757)
++.+.+ .|++|+..+ + +=.++|.|+++.+||+++-+++.+-+.-.-..+.++.+....+.+...++--....=++
T Consensus 3 ~~~i~~~~~~~i~~~d-~---~g~I~~~N~a~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (113)
T PF00989_consen 3 YRAILENSPDGIFVID-E---DGRILYVNQAAEELLGYSREELIGKSLFDLIHPEDRRELRERLRQALSQGESGESFEVR 78 (113)
T ss_dssp HHHHHHCSSSEEEEEE-T---TSBEEEECHHHHHHHSS-HHHHTTSBGGGGCSGGGHHHHHHHHHHHHHHCCHECEEEEE
T ss_pred HHHHHhcCCceEEEEe-C---cCeEEEECHHHHHHHccCHHHHcCCcHHHhcCchhhHHHHHHHHHHHHcCCCceeEEEE
Confidence 455554 788877766 3 56899999999999999999999988887777776667777788888777655555555
Q ss_pred Ecc-CCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 720 VSS-MGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 720 iSs-~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
+.. .|+.++++ ..+=.+.|.+|+..|.-.+|.
T Consensus 79 ~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 111 (113)
T PF00989_consen 79 FRLRDGRPRWVE-VRASPVRDEDGQIIGILVIFR 111 (113)
T ss_dssp EEETTSCEEEEE-EEEEEEEETTEEEEEEEEEEE
T ss_pred EEecCCcEEEEE-EEEEEEEeCCCCEEEEEEEEE
Confidence 555 88888874 344455688888888777664
No 31
>PF08448 PAS_4: PAS fold; InterPro: IPR013656 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. ; PDB: 3K3D_A 3K3C_B 3KX0_X 3FC7_B 3LUQ_D 3MXQ_A 3BWL_C 3FG8_A.
Probab=96.76 E-value=0.016 Score=50.18 Aligned_cols=103 Identities=14% Similarity=0.182 Sum_probs=80.8
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 725 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GR 725 (757)
+.|++|+..+ .|=+++|+|+++.++|..+-.++++.+...-..+..+++....+.++++.|-.....-+... .|+
T Consensus 3 ~~p~~i~v~D----~~~~i~~~N~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 77 (110)
T PF08448_consen 3 SSPDGIFVID----PDGRIVYANQAAAELFGVSPEELIGRSLFDLLPPEDREEFQAALRRALAGGEPVFFEEILLR-DGE 77 (110)
T ss_dssp HCSSEEEEEE----TTSBEEEE-HHHHHHHTSTHHHHTTSBHHHHSCCGCHHHHHHHHHHHHHHTSEEEEEEEECT-TSC
T ss_pred CCCceeEEEC----CCCEEEEEHHHHHHHhCCCHHHHhhccchhccccchhhhhHHHHHHhhccCceEEEEEEEee-cCC
Confidence 4677776663 46789999999999999999999999999888888999999999999999876554333333 566
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEEecCc
Q 004383 726 AVSYEQAVAWKVLDDDDSNHCLAFMFMNW 754 (757)
Q Consensus 726 rf~ie~A~vW~v~D~~g~~~GqAa~F~nW 754 (757)
..+| +..+=-+.|++|+..|..+++.+-
T Consensus 78 ~~~~-~~~~~Pi~~~~g~~~g~~~~~~Di 105 (110)
T PF08448_consen 78 ERWF-EVSISPIFDEDGEVVGVLVIIRDI 105 (110)
T ss_dssp EEEE-EEEEEEEECTTTCEEEEEEEEEEE
T ss_pred cEEE-EEEEEEeEcCCCCEEEEEEEEEEC
Confidence 6655 445566679999999988887664
No 32
>PRK13557 histidine kinase; Provisional
Probab=96.26 E-value=0.039 Score=61.65 Aligned_cols=113 Identities=9% Similarity=-0.013 Sum_probs=80.0
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
...+..+.+ .+++|+..+.. ..|-.++|+|+++.++|+|+.+|+.+.+...-..+...++....+.+....|-.....
T Consensus 29 ~~~~~~~~~~~~~~i~v~d~~-~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (540)
T PRK13557 29 SDIFFAAVETTRMPMIVTDPN-QPDNPIVFANRAFLEMTGYAAEEIIGNNCRFLQGPETDRATVAEVRDAIAERREIATE 107 (540)
T ss_pred hHHHHHHHHhCcCcEEEEcCC-CCCCCEEEEcHHHHHHhCCCHHHhcCCChHhhcCCCCCHHHHHHHHHHHHcCCCceEE
Confidence 345555544 77887777653 1467899999999999999999999999876665555555555566666655433333
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
-.+..+.|+.++++ ..+-.+.|++|...|...+..
T Consensus 108 ~~~~~~~G~~~~~~-~~~~~i~~~~g~~~~~~~~~~ 142 (540)
T PRK13557 108 ILNYRKDGSSFWNA-LFVSPVYNDAGDLVYFFGSQL 142 (540)
T ss_pred EEEEeCCCCEEEEE-EEEEEeECCCCCEEEEEEEec
Confidence 34567899999875 455668899998887766553
No 33
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=95.46 E-value=0.25 Score=51.76 Aligned_cols=156 Identities=21% Similarity=0.289 Sum_probs=102.2
Q ss_pred HHHHHHHhhcCCCcceeecCCCCCCCCccceeeecCCC-ceeeeeeeeEEeeChhhhhhhhcC---cchhhhhCccceee
Q 004383 79 TLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNC-SGVAARACGLVSLDPTKIAEILKD---CPSWFRDCRCLDVL 154 (757)
Q Consensus 79 am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~~~~-~~eAsRa~glV~m~~~~LVe~lmD---~~~W~~~f~~i~vl 154 (757)
+++++-..|-..+..|..+-+-+ -.+|--...+.+. ..-=+| ..+=.+.|..+-++++| |.+|-.+--.+++|
T Consensus 16 ~~~~~e~~~~~~~~~We~~~~k~--~~~i~~q~~~~~g~~~Yk~~-~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~i 92 (219)
T KOG2761|consen 16 LLDLLEEKACDAGQGWELVMDKS--TPSIWRQRRPKTGLYEYKSR-TVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETI 92 (219)
T ss_pred HHHhhcccccCcccchhhhcccC--CceEEEEcccCCCCEEEEEE-EEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheee
Confidence 34444445567788899873322 1222110011110 000111 11224568899999999 57899988888999
Q ss_pred eeec-cCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeee
Q 004383 155 SVIP-TGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIR 233 (757)
Q Consensus 155 ~~~~-~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq 233 (757)
+..+ +| -+++|-+...|.|+- .||+-++|-.-..++-.-+||-.|+.. +..|+...++|..-.=||++||
T Consensus 93 e~d~~tg----~~vv~w~~kfP~p~~-~RdYV~~Rr~~~~~~k~~~i~s~~v~h----~s~P~~~~~vRv~~~~s~~~I~ 163 (219)
T KOG2761|consen 93 EEDPVTG----TEVVYWVKKFPFPMS-NRDYVYVRRWWESDEKDYYIVSKSVQH----PSYPPLKKKVRVTVYRSGWLIR 163 (219)
T ss_pred eecCCCC----ceEEEEEEeCCcccC-CccEEEEEEEEecCCceEEEEEecccC----CCcCCcCCcEEEEEEEEEEEEE
Confidence 9877 43 488999999998875 599999988887777777787777764 4455566789999999999999
Q ss_pred -----ecCCC-ceEEEEEE
Q 004383 234 -----PCEGG-GSIIHIVD 246 (757)
Q Consensus 234 -----~~~nG-~SkVtwVe 246 (757)
+=++| .|.++|.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~ 182 (219)
T KOG2761|consen 164 VESRSGDEQGCACEYLYFH 182 (219)
T ss_pred cccccCCCCccEEEEEEEE
Confidence 44444 23444443
No 34
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=95.02 E-value=0.14 Score=52.98 Aligned_cols=111 Identities=17% Similarity=0.118 Sum_probs=84.6
Q ss_pred cchhhhhCc--cceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEe-eeeeCC-CcEEEEEeecCCCCCCCCCC-
Q 004383 141 CPSWFRDCR--CLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRY-STSLED-GSLVVCERSLTSSTGGPTGP- 215 (757)
Q Consensus 141 ~~~W~~~f~--~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRY-ckql~~-G~wvVvDvSld~~~~~~~~~- 215 (757)
..+|...+. .++++++...+.++..++.|.+..+|-| +..|||..|.. +...+. ..++|+..+++.. ..|
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~P-l~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~----~~p~ 139 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFP-LSPRVFNELVHIKSDLDPASEFMVVSLPITPP----LVES 139 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEECCCC-CCCcEEEEEEEeeccCCCCCeEEEEEEEecCC----cCCc
Confidence 346888888 7899998887766678899999999999 88999999999 666652 5678888888753 222
Q ss_pred CCCccceeeecccceeeeecCC---CceEEEEEEeeeecCC-cccc
Q 004383 216 PPSSFVRAEMLASGFLIRPCEG---GGSIIHIVDHVDLDAW-SVPE 257 (757)
Q Consensus 216 ~~~~f~r~~rlPSGcLIq~~~n---G~SkVtwVeH~e~d~~-~V~e 257 (757)
....|+|++ .=||..|+..|. +-..|+|+==...|+. .||.
T Consensus 140 ~~~~~Vr~~-y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~ 184 (208)
T cd08864 140 LYENAVLGR-YASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPR 184 (208)
T ss_pred cCCCcEEEE-EEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcH
Confidence 335789988 789999998875 4789999983344555 4663
No 35
>PRK13559 hypothetical protein; Provisional
Probab=94.94 E-value=0.21 Score=53.67 Aligned_cols=114 Identities=12% Similarity=-0.017 Sum_probs=77.3
Q ss_pred HHHHHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 638 DALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 638 ~~~~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
+..++.++ +.+++|+..+.. ..+-.+.|.|+++.+||+++.+++.+.+.+....+....+....+.++.+.|-.....
T Consensus 42 ~~~~~~~~e~~~~~i~i~D~~-~~~g~i~~~N~a~~~l~G~~~~e~iG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 120 (361)
T PRK13559 42 GRLFEQAMEQTRMAMCITDPH-QPDLPIVLANQAFLDLTGYAAEEVVGRNCRFLQGAATDPIAVAKIRAAIAAEREIVVE 120 (361)
T ss_pred hhHHHHHHHhCCCcEEEecCC-CCCCcEEEEchHHHHHhCCCHHHHcCCChhhhcCCCCCHHHHHHHHHHhccCCceEEE
Confidence 44566555 478888888764 1366899999999999999999999988765444444444555566666666544444
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
-.+..+.|+.|+++- .+=-+.|++|...|...++.+
T Consensus 121 ~~~~~~dG~~~~~~~-~~~~i~d~~G~~~~~v~~~~D 156 (361)
T PRK13559 121 LLNYRKDGEPFWNAL-HLGPVYGEDGRLLYFFGSQWD 156 (361)
T ss_pred EEEEcCCCCEEEEEE-EEEEEEcCCCCEEEeeeeeee
Confidence 455678888887643 222356888888776655543
No 36
>TIGR00229 sensory_box PAS domain S-box. The PAS domain was previously described. This sensory box, or S-box domain occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include heme in the oxygen sensor FixL, FAD in the redox potential sensor NifL, and a 4-hydroxycinnamyl chromophore in photoactive yellow protein. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator.
Probab=94.65 E-value=0.61 Score=37.12 Aligned_cols=107 Identities=11% Similarity=0.112 Sum_probs=65.5
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
.++.+++ .+.+++..+. +-.+.|.|.++.++|+++..++.+.+......+.........+.++.+.+......-.
T Consensus 4 ~~~~~~~~~~~~~~~~d~----~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (124)
T TIGR00229 4 RYRAIFESSPDAIIVIDL----EGNILYVNPAFEEIFGYSAEELIGRNVLELIPEEDREEVRERIERLLEGEREPVSEER 79 (124)
T ss_pred HHHHHHhhCCceEEEEcC----CCcEEEEchHHHHHhCCChHHhcCcchhhhcChhhhHHHHHHHHHHHcCCCCCcceEe
Confidence 3455655 4556665543 4578999999999999999999888777666555555555556666653322222233
Q ss_pred EE-ccCCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 719 CV-SSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 719 Ri-Ss~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
++ ...|+.+++.- ..-.+. ++|...+...++.
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ 112 (124)
T TIGR00229 80 RVRRKDGSEIWVEV-SVSPIR-TNGGELGVVGIVR 112 (124)
T ss_pred eeEcCCCCEEEEEE-EEeehh-hCCCeeEEEEEee
Confidence 43 56666655532 222233 5677777666554
No 37
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=94.46 E-value=1.7 Score=45.00 Aligned_cols=129 Identities=16% Similarity=0.302 Sum_probs=77.4
Q ss_pred CCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccccccch
Q 004383 323 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDAY 400 (757)
Q Consensus 323 ~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~~~d~~ 400 (757)
.++|.... ..+++.|..+++.+. .+. + .++..-+ |.+|+.||+||.+ +|.+||..
T Consensus 21 ~~gWk~~k--~~~~~~v~~k~~~~~--~gk-----------l--~k~egvi-~~~~e~v~~~l~~~e~r~~Wd~~----- 77 (204)
T cd08904 21 TSGWKVVK--TSKKITVSWKPSRKY--HGN-----------L--YRVEGII-PESPAKLIQFMYQPEHRIKWDKS----- 77 (204)
T ss_pred ccCCeEEe--cCCceEEEEEEcCCC--Cce-----------E--EEEEEEe-cCCHHHHHHHHhccchhhhhccc-----
Confidence 48999773 348999999987631 212 2 2445566 8999999999997 99999973
Q ss_pred hhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCccccccccceEEEeeecCCCCCCCCceeEE
Q 004383 401 SAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQL 480 (757)
Q Consensus 401 sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~~~~~~~~~~llLQe~~~~D~~a~GscS~v 480 (757)
. .+ .+.+-+| +...+|...+..+.. -..+-+||.+.+|-.--+| - | .++
T Consensus 78 ~----~~---------------~~iie~I----d~~T~I~~~~~~~~~---~~~vspRDfV~vr~~~r~~--~-~--~~i 126 (204)
T cd08904 78 L----QV---------------YKMLQRI----DSDTFICHTITQSFA---MGSISPRDFVDLVHIKRYE--G-N--MNI 126 (204)
T ss_pred c----cc---------------eeeEEEe----CCCcEEEEEeccccc---CCcccCceEEEEEEEEEeC--C-C--EEE
Confidence 1 11 2333333 555566666643311 1124468888887742223 1 2 233
Q ss_pred E-eecccCC----CCCCC--CcccCceEEecC
Q 004383 481 V-FAPIDES----FADDA--PLLASGFRVIPL 505 (757)
Q Consensus 481 V-yAPVD~~----ds~~v--pLLPSGF~IlP~ 505 (757)
+ +.-|+-. -+.+| -..|+||.|.|+
T Consensus 127 i~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl 158 (204)
T cd08904 127 VSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPL 158 (204)
T ss_pred EEEEecccCCCCCCCCcEEEeeeccEEEEEEC
Confidence 3 3333332 23444 378899999994
No 38
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=93.71 E-value=1.3 Score=45.69 Aligned_cols=65 Identities=25% Similarity=0.426 Sum_probs=45.2
Q ss_pred HHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hh
Q 004383 312 RGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HR 389 (757)
Q Consensus 312 ~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~R 389 (757)
..|.+-+ ...++|..... .++|+|..++..+ +.+...++...++.+||+.+|++|.| .|
T Consensus 13 ~~~~~~~--~~~~~W~~~~~--~~gi~iy~r~~~~---------------~~~~~~k~~~~~~~~s~e~~~~~l~D~~~r 73 (222)
T cd08871 13 EEFKKLC--DSTDGWKLKYN--KNNVKVWTKNPEN---------------SSIKMIKVSAIFPDVPAETLYDVLHDPEYR 73 (222)
T ss_pred HHHHHHh--cCCCCcEEEEc--CCCeEEEEeeCCC---------------CceEEEEEEEEeCCCCHHHHHHHHHChhhh
Confidence 3444433 23568996643 4679999887642 13444556666657999999999998 89
Q ss_pred cccccc
Q 004383 390 SEWADY 395 (757)
Q Consensus 390 seWd~~ 395 (757)
.+||..
T Consensus 74 ~~Wd~~ 79 (222)
T cd08871 74 KTWDSN 79 (222)
T ss_pred hhhhhh
Confidence 999974
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=93.62 E-value=2.8 Score=42.72 Aligned_cols=68 Identities=24% Similarity=0.383 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHH
Q 004383 306 FSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFL 385 (757)
Q Consensus 306 LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FL 385 (757)
..+.+.+.=++ ..++|.... ..++|+|.+++..+ +. .+.--++.+-+ +.+|+.|++.|
T Consensus 6 ~~~~ll~~~~~-----~~~~W~~~~--~~~gi~I~~k~~~~----~~----------~l~~~K~~~~v-~a~~~~v~~~l 63 (197)
T cd08869 6 CVQDLLREARD-----KSKGWVSVS--SSDHVELAFKKVDD----GH----------PLRLWRASTEV-EAPPEEVLQRI 63 (197)
T ss_pred HHHHHHHHHhh-----ccCCceEEe--cCCcEEEEEEeCCC----CC----------cEEEEEEEEEe-CCCHHHHHHHH
Confidence 44444444442 468998653 35699999999752 12 24445777888 79999999999
Q ss_pred hhhhcccccc
Q 004383 386 REHRSEWADY 395 (757)
Q Consensus 386 Rd~RseWd~~ 395 (757)
.|.|.+||..
T Consensus 64 ~d~r~~Wd~~ 73 (197)
T cd08869 64 LRERHLWDDD 73 (197)
T ss_pred HHHHhccchh
Confidence 9999999974
No 40
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=93.47 E-value=0.57 Score=56.26 Aligned_cols=110 Identities=13% Similarity=0.072 Sum_probs=81.1
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
..++.+.+ .|++|+..+. +=.++|.|+++.++|+++.+++.+.+..-...+..+........++.++|-...+.-
T Consensus 155 ~~l~~il~~~~~~i~~~D~----~g~i~~~N~a~~~l~G~~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 230 (779)
T PRK11091 155 SLLRSFLDASPDLVYYRNE----DGEFSGCNRAMELLTGKSEKQLIGLTPKDVYSPEAAEKVIETDEKVFRHNVSLTYEQ 230 (779)
T ss_pred HHHHHHHhcCcceEEEECC----CCcEEeEcHHHHHHhCcCHHHHcCCChHHhCCHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 34555554 7888887654 458999999999999999999999877666655555555555667777776665555
Q ss_pred eEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 718 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 718 vRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
....+.|+.++++ .....+.|++|...|...++.+
T Consensus 231 ~~~~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 265 (779)
T PRK11091 231 WLDYPDGRKACFE-LRKVPFYDRVGKRHGLMGFGRD 265 (779)
T ss_pred EEEcCCCCEEEEE-EEeeeEEcCCCCEEEEEEEEee
Confidence 5667789888775 4566678999999988777754
No 41
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=93.02 E-value=0.7 Score=47.87 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=39.9
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
-..++|. +. ...++|+|.++... + . .-++++. +-+ ++||+.|+++|+| .|.+||..
T Consensus 19 ~~~~gW~-l~-~~~~gI~Vy~k~~~----~-~--------~~~~~ge---~~v-~as~~~v~~ll~D~~~r~~Wd~~ 76 (205)
T cd08874 19 QATAGWS-YQ-CLEKDVVIYYKVFN----G-T--------YHGFLGA---GVI-KAPLATVWKAVKDPRTRFLYDTM 76 (205)
T ss_pred hccCCcE-EE-ecCCCEEEEEecCC----C-C--------cceEEEE---EEE-cCCHHHHHHHHhCcchhhhhHHh
Confidence 4677994 33 34578999998643 2 2 1245543 355 8999999999998 99999973
No 42
>cd00130 PAS PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.
Probab=92.64 E-value=2.6 Score=31.48 Aligned_cols=98 Identities=14% Similarity=0.123 Sum_probs=56.5
Q ss_pred CCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEE-ccCCCe
Q 004383 648 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV-SSMGRA 726 (757)
Q Consensus 648 ~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRi-Ss~GRr 726 (757)
+.+++..+. +-.+.|.|+++.++|.++..++.+.+......+..+......+.++.+.+-...+ -+++ ...|..
T Consensus 2 ~~~i~~~d~----~~~~~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 76 (103)
T cd00130 2 PDGVIVLDL----DGRILYANPAAEQLLGYSPEELIGKSLLDLIHPEDREELRERLENLLSGGEPVTL-EVRLRRKDGSV 76 (103)
T ss_pred CceEEEECC----CCcEEEECHHHHHHhCCCHHHHcCccHHHhcCCccchHHHHHHHHHHhcCcCeEE-EEEEEccCCCE
Confidence 344444443 4467899999999999999999887766555555555555555555543222211 2222 233555
Q ss_pred EEEcceEEeEeecCCCCeeEEEEEe
Q 004383 727 VSYEQAVAWKVLDDDDSNHCLAFMF 751 (757)
Q Consensus 727 f~ie~A~vW~v~D~~g~~~GqAa~F 751 (757)
.++. ..+-.+.+.+|...+...++
T Consensus 77 ~~~~-~~~~~~~~~~~~~~~~~~~~ 100 (103)
T cd00130 77 IWVL-VSLTPIRDEGGEVIGLLGVV 100 (103)
T ss_pred EEEE-EEEEEEecCCCCEEEEEEEE
Confidence 5443 22233445556666655544
No 43
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=92.31 E-value=5.5 Score=41.66 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=43.4
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhhhhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd~RseWd~~ 395 (757)
-...||.... ..++|.|.++|..+ + . |.-.+.| |+=++.+|.+.|+|.|+| |..||..
T Consensus 24 ek~kgW~~~~--~~~~vev~~kk~~d---~-~-------~l~lwk~---s~ei~~~p~~vl~rvL~d-R~~WD~~ 81 (205)
T cd08907 24 ERFKGWHSAP--GPDNTELACKKVGD---G-H-------PLRLWKV---STEVEAPPSVVLQRVLRE-RHLWDED 81 (205)
T ss_pred hccCCceeec--CCCCcEEEEEeCCC---C-C-------ceEEEEE---EEEecCCCHHHHHHHhhc-hhhhhHH
Confidence 5557998653 36789999999763 2 3 2334444 466688999999999999 9999984
No 44
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=91.60 E-value=1.5 Score=49.10 Aligned_cols=85 Identities=14% Similarity=0.135 Sum_probs=63.5
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
..++.+++ .+++|+..+.+ +-.+.|.|.++.+||+|+.+++.+.+......+..+......+.+..++|....+ =
T Consensus 133 ~r~~~l~e~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~ 208 (442)
T TIGR02040 133 TRYRVVLEVSSDAVLLVDMS---TGRIVEANSAAAALLGGVGQSLVGRAFPQEFEGRRREELMLTLRNVRATGSAAPV-R 208 (442)
T ss_pred HHHHHHHhhCCceEEEEECC---CCEEEEEcHHHHHHhCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCCcce-E
Confidence 34555555 67888877654 5589999999999999999999999877667777888888888888888875433 2
Q ss_pred eEEccCCCeE
Q 004383 718 MCVSSMGRAV 727 (757)
Q Consensus 718 vRiSs~GRrf 727 (757)
++....|.++
T Consensus 209 ~~~~~~~~~~ 218 (442)
T TIGR02040 209 ILLRRSQKRL 218 (442)
T ss_pred EEEcCCCeEE
Confidence 4444445444
No 45
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=91.28 E-value=0.81 Score=50.17 Aligned_cols=110 Identities=12% Similarity=-0.006 Sum_probs=68.6
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
+.++.+.. .|++|+..+. +..+.|.|+++.++|+++-+++.+.+......+....+....+.+....|-.....-
T Consensus 4 ~~~~~i~~~~~~~i~~~d~----~g~~~~~N~~~~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (494)
T TIGR02938 4 EAYRQTVDQAPLAISITDL----KANILYANDAFTRITGYTKEEIIGKNESVLSNHTTPPEVYQALWGSLAEQKPWAGKL 79 (494)
T ss_pred HHHHHHHHhCCceEEEECC----CCcEEEEchhheeecCCCHHHHhCCCchhhcCCCCCHHHHHHHHHHHHhCCccccee
Confidence 34566654 6677766554 468999999999999999999998764433333322332333333333332222233
Q ss_pred eEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 718 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 718 vRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.+..+.|+.++.+ ..+-.+.|++|...|.-.++.+
T Consensus 80 ~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 114 (494)
T TIGR02938 80 LNRRKDGELYLAE-LTVAPVLNEAGETTHFLGMHRD 114 (494)
T ss_pred eccCCCccchhhh-eeeEEEECCCCCEEEEEEehhh
Confidence 3456788888764 3444667888988876666543
No 46
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=91.14 E-value=3.9 Score=39.58 Aligned_cols=126 Identities=17% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccccccchh
Q 004383 324 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADYGVDAYS 401 (757)
Q Consensus 324 ~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~~~d~~s 401 (757)
++|..+... ++|+|..++..+ . .+...++..-+ +.|+..++++|.| .|.+||.. +..
T Consensus 15 ~~W~~~~~~--~~v~vy~~~~~~-----~----------~~~~~k~~~~i-~~~~~~v~~~l~d~~~~~~w~~~---~~~ 73 (193)
T cd00177 15 EGWKLVKEK--DGVKIYTKPYED-----S----------GLKLLKAEGVI-PASPEQVFELLMDIDLRKKWDKN---FEE 73 (193)
T ss_pred CCeEEEEEC--CcEEEEEecCCC-----C----------CceeEEEEEEE-CCCHHHHHHHHhCCchhhchhhc---ceE
Confidence 589987543 388888877642 1 23345556777 6799999999996 89999963 011
Q ss_pred hhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCccccccccceEEEeeecCCCCCCCCceeEEE
Q 004383 402 AACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQLV 481 (757)
Q Consensus 402 a~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~~~~~~~~~~llLQe~~~~D~~a~GscS~vV 481 (757)
..++..+.. +..+.-.+....-+ +-+||++++..+ ..++ .|. -+++
T Consensus 74 ---------------------~~vl~~~~~----~~~i~~~~~~~p~p-----~~~Rdfv~~~~~-~~~~--~~~-~~~~ 119 (193)
T cd00177 74 ---------------------FEVIEEIDE----HTDIIYYKTKPPWP-----VSPRDFVYLRRR-RKLD--DGT-YVIV 119 (193)
T ss_pred ---------------------EEEEEEeCC----CeEEEEEEeeCCCc-----cCCccEEEEEEE-EEcC--CCe-EEEE
Confidence 233333322 12333333333211 346889988875 4553 343 4667
Q ss_pred eecccCC-CC---CCC--CcccCceEEec
Q 004383 482 FAPIDES-FA---DDA--PLLASGFRVIP 504 (757)
Q Consensus 482 yAPVD~~-ds---~~v--pLLPSGF~IlP 504 (757)
.-+||.. .| +.+ .++++||.|-|
T Consensus 120 ~~Si~~~~~p~~~~~vR~~~~~~~~~i~~ 148 (193)
T cd00177 120 SKSVDHDSHPKEKGYVRAEIKLSGWIIEP 148 (193)
T ss_pred EeecCCCCCCCCCCcEEEEEEccEEEEEE
Confidence 7777664 11 222 24567777777
No 47
>PRK13558 bacterio-opsin activator; Provisional
Probab=90.03 E-value=2.6 Score=49.77 Aligned_cols=106 Identities=8% Similarity=-0.071 Sum_probs=75.1
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 725 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GR 725 (757)
+.|+.|...+.. ..+..+.|.|.+..+||+++-+++.+.+......+..+.++...+.+..+.|-.....-....+.|.
T Consensus 156 ~~~~gi~~~d~~-~~dg~i~~~N~~~~~l~G~~~eel~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 234 (665)
T PRK13558 156 EAPVGITIADAT-LPDEPLIYINDAFERITGYSPDEVLGRNCRFLQGEDTNEERVAELREAIDEERPTSVELRNYRKDGS 234 (665)
T ss_pred cCCccEEEEcCC-CCCCcEEEEcHHHHHHhCcCHHHHcCCCHHHhcCCCccHHHHHHHHHHHhcCCCeEEEEEEECCCCC
Confidence 367777776642 2577899999999999999999999988776666666666666666666666543333334567888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 726 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 726 rf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.++++ ..+=.+.|++|...|...++.+
T Consensus 235 ~~~~~-~~~~pi~d~~G~~~~~vgi~~D 261 (665)
T PRK13558 235 TFWNQ-VDIAPIRDEDGTVTHYVGFQTD 261 (665)
T ss_pred EEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 87764 2333566888998887766644
No 48
>TIGR02040 PpsR-CrtJ transcriptional regulator PpsR. This model represents the transcriptional regulator PpsR which is strictly associated with photosynthetic proteobacteria and found in photosynthetic operons. PpsR has been reported to be a repressor. These proteins contain a Helix-Turn_Helix motif of the "fis" type (pfam02954).
Probab=89.94 E-value=1.7 Score=48.64 Aligned_cols=95 Identities=22% Similarity=0.285 Sum_probs=68.4
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccC-HHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETT-LVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~t-w~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
++.++ ..|++|+..+.+ =.++|+|.++.+||+++ -+++.+.+...-.. ....+...++..+.+.|....|...
T Consensus 254 ~~~l~e~~~d~I~v~D~~----G~I~~~N~a~~~l~G~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (442)
T TIGR02040 254 LARLYHEAPDAIVFSDAD----GTIRGANEAFLELTDSSSLEAVRGRTLDRWLG-RGGVDLRVLLSNVRRTGQVRLYATT 328 (442)
T ss_pred HHHHHHhCCceEEEEcCC----CcEEehhHHHHHHhCCCChHHHcCCCHHHHhC-CCcccHHHHHHHHhhcCceEEEEEE
Confidence 44444 489999887655 36899999999999997 57899887642222 2233456677888888988888877
Q ss_pred EEccCCCeEEEcceEEeEeecCCC
Q 004383 719 CVSSMGRAVSYEQAVAWKVLDDDD 742 (757)
Q Consensus 719 RiSs~GRrf~ie~A~vW~v~D~~g 742 (757)
-..+.|+.+.++ +-...+.+++
T Consensus 329 ~~~~~G~~~~ve--~s~~~i~~~~ 350 (442)
T TIGR02040 329 LTGEFGAQTEVE--ISAAWVDQGE 350 (442)
T ss_pred EEcCCCCEEEEE--EEEEEeccCC
Confidence 789999999996 3344454443
No 49
>PRK13560 hypothetical protein; Provisional
Probab=89.84 E-value=2.3 Score=50.27 Aligned_cols=109 Identities=10% Similarity=-0.043 Sum_probs=70.5
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 719 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR 719 (757)
++.++ +.|++|+..+. +=.|+|.|+++.++|+++-+|+.+.+...-..+...+............|-...+.-..
T Consensus 206 l~~l~e~~~~~i~~~d~----~g~i~~~N~~~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 281 (807)
T PRK13560 206 LQQLLDNIADPAFWKDE----DAKVFGCNDAACLACGFRREEIIGMSIHDFAPAQPADDYQEADAAKFDADGSQIIEAEF 281 (807)
T ss_pred HHHHHhhCCCeEEEEcC----CCCEEEEhHHHHHHhCCCHHHHcCCcchhcCCcchhHHHHHHHHHHhccCCceEEEEEE
Confidence 44454 47787776543 45899999999999999999999988776554444444434444444444333344455
Q ss_pred EccCCCeEEEcce-EEeEeecCCCCeeEEEEEecC
Q 004383 720 VSSMGRAVSYEQA-VAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 720 iSs~GRrf~ie~A-~vW~v~D~~g~~~GqAa~F~n 753 (757)
..+.|+.++++-. ..-.+.|++|...|...++.+
T Consensus 282 ~~~dG~~~~~~~~~~~~~~~~~~g~~~g~~~~~~D 316 (807)
T PRK13560 282 QNKDGRTRPVDVIFNHAEFDDKENHCAGLVGAITD 316 (807)
T ss_pred EcCCCCEEEEEEEecceEEEcCCCCEEEEEEEEEe
Confidence 6788888855321 122345788888877666543
No 50
>PF15058 Speriolin_N: Speriolin N terminus
Probab=89.83 E-value=0.13 Score=52.66 Aligned_cols=29 Identities=38% Similarity=0.515 Sum_probs=25.0
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhccccC
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQLHSA 33 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~~~~ 33 (757)
=||.||++|.||| +|++||+.+|.-|-.+
T Consensus 16 rLv~ENeeLKKlV-rLirEN~eLksaL~ea 44 (200)
T PF15058_consen 16 RLVRENEELKKLV-RLIRENHELKSALGEA 44 (200)
T ss_pred HHHhhhHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 3789999999999 6999999999886543
No 51
>PF13188 PAS_8: PAS domain; PDB: 2JHE_D 3VOL_A.
Probab=89.44 E-value=0.58 Score=38.09 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=30.1
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML 687 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lps 687 (757)
.++.+++ .|++|+..+ + . +++|+|+++.+||+++ ..+.+.
T Consensus 2 ~~~~l~~~~~~~i~i~d-~--~--~i~~~N~~~~~l~g~~---~~~~~~ 42 (64)
T PF13188_consen 2 RYRSLFDNSPDGILIID-G--G--RIIYVNPAFEELFGYS---LEGEDI 42 (64)
T ss_dssp HHHHHHCCSSSEEEEEE-T--S--BEEEE-HHHHHHHCS----HTCCCH
T ss_pred HHHHHHHcCccceEEEE-C--C--ChHHhhHHHHHHhCCC---CCCCCH
Confidence 4667765 888999888 7 3 8999999999999999 444444
No 52
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.26 E-value=5.3 Score=37.22 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=72.3
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccce-eEEEEeeeee-------
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARD-FWLLRYSTSL------- 193 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re-~~fLRYckql------- 193 (757)
|++-.|...+..+-+++.|.+.|.+-.|.++-..++..+.++. . ++.. .|. +.+++|+..+
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~~-~-~~~~---------~~~~~~~~~~~~~v~~~~~~~ 70 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNRV-V-LEQT---------GKQGILFFKFEARVVLELRER 70 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCEE-E-EEEe---------eeEEEEeeeeeEEEEEEEEEe
Confidence 4566778889999999999999999999887776665433332 1 2211 111 2222232211
Q ss_pred C--CCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecCC-CceEEEEEEeeeecCCcccccchhhhchhHHHH
Q 004383 194 E--DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEG-GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILA 270 (757)
Q Consensus 194 ~--~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~n-G~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afg 270 (757)
. +..+.+ .. +++ + ...|... .-+++.++ |+|+|+|--|++... .+| -++++.-+-=+
T Consensus 71 ~~~~~~i~~-~~-~~g----~----~~~~~g~------w~~~~~~~~~~t~v~~~~~~~~~~-~~p---~~l~~~~~~~~ 130 (144)
T cd08866 71 EEFPRELDF-EM-VEG----D----FKRFEGS------WRLEPLADGGGTLLTYEVEVKPDF-FAP---VFLVEFVLRQD 130 (144)
T ss_pred cCCCceEEE-EE-cCC----c----hhceEEE------EEEEECCCCCeEEEEEEEEEEeCC-CCC---HHHHHHHHHHH
Confidence 1 121111 10 111 1 0011111 23688887 789999988877653 343 35664444446
Q ss_pred HHHHHHHHH-HHh
Q 004383 271 QKMTMAAMR-HIR 282 (757)
Q Consensus 271 arrw~aaLr-~~e 282 (757)
.+..+.+|| +||
T Consensus 131 ~~~~l~~lr~~ae 143 (144)
T cd08866 131 LPTNLLAIRAEAE 143 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 677778885 555
No 53
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=87.58 E-value=7.1 Score=40.01 Aligned_cols=72 Identities=21% Similarity=0.410 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHH
Q 004383 303 LRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV 382 (757)
Q Consensus 303 l~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf 382 (757)
|++.|..| +.|...+.. .++|.... ..++|+|..|..++ +.+++-++-..+ +.|+..++
T Consensus 4 ~~~~~~~~-~~~~~~l~~--~~~W~~~~--~~~~i~v~~r~~~~---------------~~~~~~k~e~~i-~~~~~~~~ 62 (215)
T cd08877 4 IRQEATIM-QENLKDLDE--SDGWTLQK--ESEGIRVYYKFEPD---------------GSLLSLRMEGEI-DGPLFNLL 62 (215)
T ss_pred HHHHHHHH-HHHHhcccC--CCCcEEec--cCCCeEEEEEeCCC---------------CCEEEEEEEEEe-cCChhHeE
Confidence 44444433 445555555 77899764 34699999998752 238899999999 78999999
Q ss_pred HHHhh--hhcccccc
Q 004383 383 RFLRE--HRSEWADY 395 (757)
Q Consensus 383 ~FLRd--~RseWd~~ 395 (757)
.+|+| .+.+|+.+
T Consensus 63 ~vl~d~~~~~~W~p~ 77 (215)
T cd08877 63 ALLNEVELYKTWVPF 77 (215)
T ss_pred EEEehhhhHhhhccc
Confidence 99998 99999974
No 54
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=86.83 E-value=14 Score=37.77 Aligned_cols=57 Identities=23% Similarity=0.362 Sum_probs=39.8
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHh-h--hhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLR-E--HRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLR-d--~RseWd~~ 395 (757)
-.+.+|.... +..++|.|.+|..++ . +-+ .++...+ ++||+.||++|- | .|.+||..
T Consensus 21 ~~~~~W~l~~-~~~~~i~i~~r~~~~-----~---------~~~--~k~~~~i-~~~~~~v~~~l~~d~~~~~~Wd~~ 80 (208)
T cd08868 21 LTDPGWKLEK-NTTWGDVVYSRNVPG-----V---------GKV--FRLTGVL-DCPAEFLYNELVLNVESLPSWNPT 80 (208)
T ss_pred hcCCCceEEE-ecCCCCEEEEEEcCC-----C---------ceE--EEEEEEE-cCCHHHHHHHHHcCccccceecCc
Confidence 4455998654 333489999998642 1 223 4555677 899999998765 4 99999974
No 55
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=86.30 E-value=6.5 Score=41.74 Aligned_cols=164 Identities=16% Similarity=0.180 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCccccccCCC-----cceEEEeecCCCCCCCCCCccCCCCCCc-eEEEEEEeecccc
Q 004383 302 VLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGG-----EDVTVAINSSPNKFLGSQYNWSMLPAFG-GVLCAKASMLLQN 375 (757)
Q Consensus 302 sl~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~-----edVrv~~r~s~~~~~~~~~~~~g~~~~g-~VLcA~tS~~L~p 375 (757)
-++.||..-+..|-. +.-...--|.+..+.+. |....+..+.. +.. ++| .+..+.++-+. +
T Consensus 3 ~~~~lA~~am~Ell~-~a~~~~plWi~~~~~~~~~l~~dey~~~f~~~~----~~~-------~~~~~~eASR~~glV-~ 69 (229)
T cd08875 3 GLLELAEEAMDELLK-LAQGGEPLWIKSPGMKPEILNPDEYERMFPRHG----GSK-------PGGFTTEASRACGLV-M 69 (229)
T ss_pred HHHHHHHHHHHHHHH-HhccCCCCceecCCCCccccCHHHHhhcccCcC----CCC-------CCCCeEEEEeeeEEE-e
Confidence 688999999999874 44445678998765542 22221111111 111 234 78888899888 7
Q ss_pred CChHHHHHHHhhhhccccc-ccccchhhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCcccc
Q 004383 376 VPPALLVRFLREHRSEWAD-YGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDV 454 (757)
Q Consensus 376 vpP~~lf~FLRd~RseWd~-~~~d~~sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~~~~ 454 (757)
+.|..|++.|.|. .+|.. |.-++-.+..++....+..| ..+..+.|+..+-+-++ --
T Consensus 70 m~~~~lVe~lmD~-~kW~~~Fp~iv~~a~tl~vistg~~g-------------------~~~G~lqlmyael~~pS--pL 127 (229)
T cd08875 70 MNAIKLVEILMDV-NKWSELFPGIVSKAKTLQVISTGNGG-------------------NRNGTLQLMYAELQVPS--PL 127 (229)
T ss_pred cCHHHHHHHHhCh-hhhhhhhhhhcceeeEEEEeeCCCCC-------------------CCCceehhhhhhcccCc--cc
Confidence 9999999999993 23444 21222222222222222222 22346667666544332 23
Q ss_pred ccccceEEEeeecCCCCCCCCceeEEEe-ecccCC----CCC---CCCcccCceEEecC
Q 004383 455 ALARDMYLLQLCSGIDENTVGACAQLVF-APIDES----FAD---DAPLLASGFRVIPL 505 (757)
Q Consensus 455 ~~~~~~llLQe~~~~D~~a~GscS~vVy-APVD~~----ds~---~vpLLPSGF~IlP~ 505 (757)
+-.||..+|.-|... ..| +.+|- =.+|.. .+. ..-.+||||-|-|.
T Consensus 128 Vp~Re~~fLRyc~~l---~dG--~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~ 181 (229)
T cd08875 128 VPTREFYFLRYCKQL---EDG--LWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDM 181 (229)
T ss_pred ccCCeEEEEEEEEEe---CCC--eEEEEEEeecccccCCCCCCccEEEEecCcEEEEEC
Confidence 456899999998633 456 33332 233432 111 22379999999883
No 56
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=86.22 E-value=10 Score=38.00 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=72.0
Q ss_pred CCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHH-HHHHHhh--hhcccccccccc
Q 004383 323 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPAL-LVRFLRE--HRSEWADYGVDA 399 (757)
Q Consensus 323 ~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~-lf~FLRd--~RseWd~~~~d~ 399 (757)
.++|..... +.+++.+..+... ++ ..+-..++...+ +.+|+. +.++|.| .|.+||.. +
T Consensus 18 ~~~W~~~~~-~~~~~~~~~~~~~----~~----------~~~~~~k~~~~v-~~~~~~~~~~~~~d~~~r~~Wd~~---~ 78 (206)
T smart00234 18 EPGWVLSSE-NENGDEVRSILSP----GR----------SPGEASRAVGVV-PMVCADLVEELMDDLRYRPEWDKN---V 78 (206)
T ss_pred CCccEEccc-cCCcceEEEEccC----CC----------CceEEEEEEEEE-ecChHHHHHHHHhcccchhhCchh---c
Confidence 468998653 2344444444432 11 146677888888 678875 6678887 89999974 1
Q ss_pred hhhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCccccccccceEEEeeecCCCCCCCCceeE
Q 004383 400 YSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQLCSGIDENTVGACAQ 479 (757)
Q Consensus 400 ~sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~~~~~~~~~~llLQe~~~~D~~a~GscS~ 479 (757)
.. .+.+-.+. .++.|.-...+..- .-+-+||..++.-+. .| ..|++.
T Consensus 79 ~~---------------------~~~ie~~~----~~~~i~~~~~~~~~----~p~~~RDfv~~r~~~-~~--~~~~~v- 125 (206)
T smart00234 79 AK---------------------AETLEVID----NGTVIYHYVSKFVA----GPVSPRDFVFVRYWR-EL--VDGSYA- 125 (206)
T ss_pred cc---------------------EEEEEEEC----CCCeEEEEEEeccc----CcCCCCeEEEEEEEE-Ec--CCCcEE-
Confidence 11 23333332 22333332222211 123458888887764 34 445422
Q ss_pred EEeecccCC----CCCCC--CcccCceEEecCC
Q 004383 480 LVFAPIDES----FADDA--PLLASGFRVIPLD 506 (757)
Q Consensus 480 vVyAPVD~~----ds~~v--pLLPSGF~IlP~~ 506 (757)
++..-++-. .+..| .++++||.|-|++
T Consensus 126 i~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~ 158 (206)
T smart00234 126 VVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG 158 (206)
T ss_pred EEEEECCCCCCCCCCCceEEEEeceEEEEEECC
Confidence 223244432 12222 4899999999953
No 57
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=85.40 E-value=16 Score=38.05 Aligned_cols=55 Identities=18% Similarity=0.386 Sum_probs=35.0
Q ss_pred CCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhhhhcccccc
Q 004383 324 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 395 (757)
Q Consensus 324 ~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd~RseWd~~ 395 (757)
.+|..+. ..+++.+..+|..+ ++ .+=--++++-+ +.||+.|+..+-+.|.+||..
T Consensus 27 k~w~~~~--~~~~~e~~ykK~~d----~~----------~lk~~r~~~ei-~~~p~~VL~~vl~~R~~WD~~ 81 (205)
T cd08909 27 KGWISCS--SSDNTELAYKKVGD----GN----------PLRLWKVSVEV-EAPPSVVLNRVLRERHLWDED 81 (205)
T ss_pred cCCcccC--CcCCeEEEEecCCC----CC----------ceEEEEEEEEe-CCCHHHHHHHHHhhHhhHHhh
Confidence 4677663 35788899988652 22 13334557888 566666654444479999973
No 58
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=85.30 E-value=11 Score=34.53 Aligned_cols=110 Identities=15% Similarity=0.198 Sum_probs=66.6
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
..+-.|...+.+|.+.|.|.+.|.+-.|.++-+.++..+.+|.-...+..+- ..+.++-+.++|...- +..+. .
T Consensus 5 ~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~i~-~ 78 (140)
T cd07819 5 SREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG----AYGIKDTYALEYTWDG-AGSVS-W 78 (140)
T ss_pred EEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEe----eeeEEEEEEEEEEEcC-CCcEE-E
Confidence 3456778889999999999999999999887777766555554333332221 2244555666776532 22211 1
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecC
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDA 252 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~ 252 (757)
. ..++ .+ +.... .-+-+++.++ +|+|+|.-+++..-
T Consensus 79 ~-~~~~---~~-------~~~~~---~~~~~~~~~~-~t~vt~~~~~~~~~ 114 (140)
T cd07819 79 T-LVEG---EG-------NRSQE---GSYTLTPKGD-GTRVTFDLTVELTV 114 (140)
T ss_pred E-Eecc---cc-------eeEEE---EEEEEEECCC-CEEEEEEEEEEecC
Confidence 1 1111 10 11111 1256788877 59999999998754
No 59
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=84.66 E-value=21 Score=32.80 Aligned_cols=120 Identities=13% Similarity=0.079 Sum_probs=65.3
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEE
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 202 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvD 202 (757)
.+-.+...+.+|.++|.|.+.|.+-+|.++-+..++. |...+ +.+..+ .|+ ..|.-...+|+..-++..+++--
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~---~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP---NEYEA-TVKLKV-GPV-KGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC---CeEEE-EEEEEE-ccE-EEEEEEEEEEEecCCCcEEEEEE
Confidence 3445677889999999999999999988766655542 22221 222222 222 22332345555434445544432
Q ss_pred eecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhh
Q 004383 203 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 263 (757)
Q Consensus 203 vSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~ 263 (757)
..-. + ..+. ..=--+-+.+. +|+|+|+|.-+++... .+..+..+++
T Consensus 79 ~~~~-----~-----~~~~---~~~~~~~l~~~-~~gT~v~~~~~~~~~g-~l~~l~~~~~ 124 (144)
T cd05018 79 EGKG-----G-----AGFV---KGTARVTLEPD-GGGTRLTYTADAQVGG-KLAQLGSRLI 124 (144)
T ss_pred EEcC-----C-----CceE---EEEEEEEEEec-CCcEEEEEEEEEEEcc-ChhhhCHHHH
Confidence 1110 0 0111 11122347787 6779999999999653 3333444443
No 60
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=84.20 E-value=6.9 Score=33.17 Aligned_cols=82 Identities=7% Similarity=0.017 Sum_probs=57.0
Q ss_pred EcccHHHHHhhccCHHHHhccc----ccccCChhcHHHHHHHHHH-HHHhccccCCCeeEEccCCCeEEEcceEEeEeec
Q 004383 665 TFANQAGLDMLETTLVALQDIM----LDKILDEAGRKILCTEFAK-IMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 739 (757)
Q Consensus 665 ~YAN~aAL~m~E~tw~el~~lp----sr~sae~~~R~eR~~lL~~-v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v~D 739 (757)
+|.|+...+||+++-+++ +.+ +..-.-|.+|+.....+.+ ..+.|-.....==.+.+.|+..+++. ..=-+.|
T Consensus 2 i~~s~~~~~i~G~~~~~~-~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~~e~R~~~~~G~~~wi~~-~~~~~~d 79 (91)
T PF08447_consen 2 IYWSDNFYEIFGYSPEEI-GKPDFEEWLERIHPDDRERVRQAIQQAALQNGEPFEIEYRIRRKDGEYRWIEV-RGRPIFD 79 (91)
T ss_dssp EEE-THHHHHHTS-HHHH-TCBEHHHHHHHB-TTTHHHHHHHHHHHHHHTT-EEEEEEEEEGTTSTEEEEEE-EEEEEET
T ss_pred EEEeHHHHHHhCCCHHHh-ccCCHHHHHhhcCHHHHHHHHHHHHHHhhccCcceEEEEEEECCCCCEEEEEE-EEEEEEC
Confidence 699999999999999999 767 5555568888888888888 66666444433334557888888854 4445568
Q ss_pred CCCCeeEEE
Q 004383 740 DDDSNHCLA 748 (757)
Q Consensus 740 ~~g~~~GqA 748 (757)
++|+..+..
T Consensus 80 ~~g~~~~~~ 88 (91)
T PF08447_consen 80 ENGKPIRII 88 (91)
T ss_dssp TTS-EEEEE
T ss_pred CCCCEEEEE
Confidence 999887654
No 61
>PRK10060 RNase II stability modulator; Provisional
Probab=84.07 E-value=7.1 Score=46.75 Aligned_cols=98 Identities=8% Similarity=-0.004 Sum_probs=66.0
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lps-r~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
.++.++. .+++|+..+.. =.++|+|+++.++++|+-+++.+.+. ++...+...+...+.+.++.+.|-......
T Consensus 112 ~~~~v~~~~~~gI~i~D~~----g~I~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 187 (663)
T PRK10060 112 FAEQVVSEANSVIVILDSR----GNIQRFNRLCEEYTGLKEHDVIGQSVFKLFMSRREAAASRRNIRGFFRSGNAYEVER 187 (663)
T ss_pred HHHHHHhhCCceEEEEeCC----CCEEEEcHHHHHHHCcCHHHHcCCCHHHHhCChhhHHHHHHHHHHHHhcCCceEEEE
Confidence 3455554 67778777654 36999999999999999999999886 444455555555666777777775443334
Q ss_pred eEEccCCCeEEEcceEEeEeecCCCC
Q 004383 718 MCVSSMGRAVSYEQAVAWKVLDDDDS 743 (757)
Q Consensus 718 vRiSs~GRrf~ie~A~vW~v~D~~g~ 743 (757)
....+.|+++++..... +.+.+|.
T Consensus 188 ~~~~~~G~~~~~~~~~~--~~~~~g~ 211 (663)
T PRK10060 188 WIKTRKGQRLFLFRNKF--VHSGSGK 211 (663)
T ss_pred EEEeCCCCEEEEEeeeE--EEcCCCC
Confidence 45678888877543221 3445554
No 62
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=83.06 E-value=4.2 Score=43.34 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=62.4
Q ss_pred HHHHhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEE
Q 004383 641 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV 720 (757)
Q Consensus 641 ~k~L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRi 720 (757)
.+.|-+.|++|+..+. +-.++|.|++|.++|+++.+++.+.+..-...+.. .+. ..+.++.+.|-...+..+++
T Consensus 10 ~~il~~~~~gi~~~d~----~~~i~~~N~a~~~~~g~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 83 (348)
T PRK11073 10 GQILNSLINSILLLDD----DLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFS-LNI-ELMRESLQAGQGFTDNEVTL 83 (348)
T ss_pred HHHHhcCcCeEEEECC----CCeEeeEcHHHHHHhCCCHHHHcCCCHHHHcCcch-hhH-HHHHHHHHcCCcccccceEE
Confidence 3444568888888764 46899999999999999999999998766654332 222 23345555554445567888
Q ss_pred ccCCCeEEEcceEEeEeec
Q 004383 721 SSMGRAVSYEQAVAWKVLD 739 (757)
Q Consensus 721 Ss~GRrf~ie~A~vW~v~D 739 (757)
.+.|+.++++ +.+..+.
T Consensus 84 ~~~g~~~~~~--~~~~~~~ 100 (348)
T PRK11073 84 VIDGRSHILS--LTAQRLP 100 (348)
T ss_pred EECCceEEEE--EEEEEcc
Confidence 8899888763 3444444
No 63
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=82.99 E-value=7.3 Score=46.56 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=68.9
Q ss_pred CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhccccccc-CChhcHHHHHHHHHHHHHhccccCCCeeEEccCCC
Q 004383 647 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKI-LDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 725 (757)
Q Consensus 647 ~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~s-ae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GR 725 (757)
.+.+|+..+ .+-.++|.|+++.++|+++.+++.+.+...- ..+....+....+.+..+.+-.....-....+.|+
T Consensus 145 ~~~~i~~~d----~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~ 220 (799)
T PRK11359 145 LDRPVIVLD----PERRIVQCNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRTGE 220 (799)
T ss_pred CCCcEEEEc----CCCcEEEEChhhHhhhCCCHHHHCCCChHHhcCCCCCcHHHHHHHHHhhccCCCCcceeEEeCCCCC
Confidence 556665543 3568999999999999999999998865433 22333344444555655555443333445678898
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 726 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 726 rf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.++++ ...-.+.|++|...|...++.+
T Consensus 221 ~~~~~-~~~~~v~d~~g~~~~~~~~~~D 247 (799)
T PRK11359 221 KIWIK-ASISPVYDVLAHLQNLVMTFSD 247 (799)
T ss_pred EEEEE-eeeeeeecCCCceeEEEEEeeh
Confidence 88874 4555678888988887777654
No 64
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=82.78 E-value=18 Score=38.57 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=40.0
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
...++|..-.. .++|+|-++... . +++-++=+-+ ++|++.||++|.| .|.+||..
T Consensus 56 ~~~~~W~l~~~--~~gI~Vyt~~~s------~-----------~~~fK~e~~v-d~s~e~v~~lL~D~~~r~~Wd~~ 112 (240)
T cd08913 56 VAKDNWVLSSE--KNQVRLYTLEED------K-----------FLSFKVEMVV-HVDAAQAFLLLSDLRRRPEWDKH 112 (240)
T ss_pred cccCCCEEEEc--cCCEEEEEEeCC------C-----------ccEEEEEEEE-cCCHHHHHHHHhChhhhhhhHhh
Confidence 45678986533 488999995432 1 1233555677 8999999999998 99999974
No 65
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=81.92 E-value=16 Score=35.63 Aligned_cols=109 Identities=11% Similarity=0.178 Sum_probs=63.1
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEE
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 202 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvD 202 (757)
.+-.|.-.|..+-+++-|..+|-+.||.+.-..++..|..|.. ....+.+..+ ..+.-|.=|.+ +....|-|.=
T Consensus 5 ~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~~~--~r~~i~~~~~--g~~~~w~s~~~--~~~~~~~i~~ 78 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDTVR--FRLTMHPDAN--GTVWSWVSERT--LDPVNRTVRA 78 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCeEE--EEEEEEeccC--CEEEEEEEEEE--ecCCCcEEEE
Confidence 4556777899999999999999999998877777666554422 1122233332 22333333433 2333443331
Q ss_pred eecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeec
Q 004383 203 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLD 251 (757)
Q Consensus 203 vSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d 251 (757)
..... +| |. .+=-.+.+++.++| |+|++.-+++..
T Consensus 79 ~~~~~---~p-------~~---~m~~~W~f~~~~~g-T~V~~~~~~~~~ 113 (146)
T cd08860 79 RRVET---GP-------FA---YMNIRWEYTEVPEG-TRMRWVQDFEMK 113 (146)
T ss_pred EEecC---CC-------cc---eeeeeEEEEECCCC-EEEEEEEEEEEC
Confidence 12211 11 11 12223446888777 999999988865
No 66
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=80.70 E-value=3.1 Score=41.43 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=44.4
Q ss_pred hcccCC-CCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccc
Q 004383 317 AINGFL-DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWA 393 (757)
Q Consensus 317 av~~s~-~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd 393 (757)
+.++++ +-+|..... .++|+|..++..+ . .+..-+++..+ +.||+.+++++.| +|.+||
T Consensus 9 ~~~~~~~~~~W~~~~~--~~~v~v~~~~~~~-----~----------~~~~~k~~~~i-~~s~e~v~~vi~d~e~~~~w~ 70 (195)
T cd08876 9 AGAALAPDGDWQLVKD--KDGIKVYTRDVEG-----S----------PLKEFKAVAEV-DASIEAFLALLRDTESYPQWM 70 (195)
T ss_pred cccccCCCCCCEEEec--CCCeEEEEEECCC-----C----------CeEEEEEEEEE-eCCHHHHHHHHhhhHhHHHHH
Confidence 344544 445997753 4689999988642 1 24455667778 7899999999998 899999
Q ss_pred cc
Q 004383 394 DY 395 (757)
Q Consensus 394 ~~ 395 (757)
..
T Consensus 71 ~~ 72 (195)
T cd08876 71 PN 72 (195)
T ss_pred hh
Confidence 74
No 67
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=80.58 E-value=29 Score=35.92 Aligned_cols=70 Identities=11% Similarity=0.223 Sum_probs=45.1
Q ss_pred HHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHH-H
Q 004383 306 FSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR-F 384 (757)
Q Consensus 306 LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~-F 384 (757)
.++-=.+.|..-+.. .++|..-. +..++|+|-+++.++ .| .+-++-+-+ ++||+.||+ .
T Consensus 9 ~~~~~~~~~~~~l~~--~~~W~l~~-~~~~gi~V~s~~~~~--------------~~--~~fk~~~~v-~~~~~~l~~~l 68 (209)
T cd08906 9 QGKEALAVVEQILAQ--EENWKFEK-NNDNGDTVYTLEVPF--------------HG--KTFILKAFM-QCPAELVYQEV 68 (209)
T ss_pred HHHHHHHHHHHHhhc--ccCCEEEE-ecCCCCEEEEeccCC--------------CC--cEEEEEEEE-cCCHHHHHHHH
Confidence 333334445544433 45898542 335789999876642 12 333667778 799999985 5
Q ss_pred Hhh--hhcccccc
Q 004383 385 LRE--HRSEWADY 395 (757)
Q Consensus 385 LRd--~RseWd~~ 395 (757)
|.| .|.+||..
T Consensus 69 l~D~~~~~~W~~~ 81 (209)
T cd08906 69 ILQPEKMVLWNKT 81 (209)
T ss_pred HhChhhccccCcc
Confidence 676 99999973
No 68
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=80.19 E-value=27 Score=32.55 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=74.9
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEE
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 202 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvD 202 (757)
.+..|...+..+.+++-|.+.|.+.+|.++-..++..+.++. ..+ +.+..+. -.|++. .|++-. .+. .+ -=
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~~~--~~~--~~~~~~~-~~~~~~-~~~~~~-~~~-~i-~~ 73 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDEDEL--EAE--LTVGFGG-IRESFT-SRVTLV-PPE-SI-EA 73 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCCEE--EEE--EEEeecc-ccEEEE-EEEEec-CCC-EE-EE
Confidence 455667778899999999999999888876666655444332 122 2222221 134443 343321 233 32 11
Q ss_pred eecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHH-HHH
Q 004383 203 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RHI 281 (757)
Q Consensus 203 vSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaL-r~~ 281 (757)
.++++ + |. .+=--+.++|.++|.|+|++.-|++..-. ++.++++.-..=..+..+.++ +.|
T Consensus 74 ~~~~g----~-------~~---~~~g~w~~~p~~~~~T~v~~~~~~~~~~~----l~~~l~~~~~~~~~~~~l~~f~~~~ 135 (138)
T cd07813 74 ELVDG----P-------FK---HLEGEWRFKPLGENACKVEFDLEFEFKSR----LLEALAGLVFDEVAKKMVDAFEKRA 135 (138)
T ss_pred EecCC----C-------hh---hceeEEEEEECCCCCEEEEEEEEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22332 1 10 11123458899999999999999998632 333444322222456677777 366
Q ss_pred hh
Q 004383 282 RQ 283 (757)
Q Consensus 282 er 283 (757)
++
T Consensus 136 ~~ 137 (138)
T cd07813 136 KQ 137 (138)
T ss_pred hh
Confidence 64
No 69
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=79.96 E-value=35 Score=30.91 Aligned_cols=108 Identities=12% Similarity=0.118 Sum_probs=57.7
Q ss_pred eeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCC-CCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEE
Q 004383 124 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGN-GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 202 (757)
Q Consensus 124 ~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~-~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvD 202 (757)
+..|...+.++-+.|.|.+.|.+-+|.+..+.+...+. .|+...++... . +.+. -+|.. .+++.--|.
T Consensus 6 ~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~~----g----~~~~-~~i~~-~~~~~~~i~- 74 (140)
T cd07821 6 SVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGAVRTVTLKD----G----GTVR-ERLLA-LDDAERRYS- 74 (140)
T ss_pred EEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCeEEEEEeCC----C----CEEE-EEehh-cCccCCEEE-
Confidence 44577788999999999999998888776666554332 34433222211 0 1111 11211 122211111
Q ss_pred eecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCC
Q 004383 203 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAW 253 (757)
Q Consensus 203 vSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~ 253 (757)
..+... +.+ +. ..-.-+-+.|.++|+|+|+|..+.+....
T Consensus 75 ~~~~~~-~~~-------~~---~~~~~~~~~~~~~~~t~v~~~~~~~~~~~ 114 (140)
T cd07821 75 YRIVEG-PLP-------VK---NYVATIRVTPEGDGGTRVTWTAEFDPPEG 114 (140)
T ss_pred EEecCC-CCC-------cc---cceEEEEEEECCCCccEEEEEEEEecCCC
Confidence 111110 011 00 11123557888888899999999887755
No 70
>PRK09776 putative diguanylate cyclase; Provisional
Probab=79.73 E-value=8.2 Score=47.96 Aligned_cols=108 Identities=11% Similarity=0.049 Sum_probs=73.5
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC-
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP- 715 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y- 715 (757)
++.++.+++ .|++|+..+ .|-.+.|.|+++.+|++++.+|+.+.+...-..+.+++.....+.++...+.....
T Consensus 282 e~r~~~l~e~~~~~i~~~d----~dG~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 357 (1092)
T PRK09776 282 ETRFRNAMEYSAIGMALVG----TEGQWLQVNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLLSGEINSYSM 357 (1092)
T ss_pred HHHHHHHHHhCCceEEEEc----CCCcEEehhHHHHHHhCCCHHHHccCCceeccCcchhHhHHHHHHHHHcCCccceee
Confidence 445666655 777776654 35789999999999999999999999887766666766666667776655432211
Q ss_pred CeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEE
Q 004383 716 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFM 750 (757)
Q Consensus 716 ~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~ 750 (757)
.-....+.|+.++++-... -+.|++|...|....
T Consensus 358 e~~~~~~dG~~~~~~~~~~-~~~~~~g~~~~~i~~ 391 (1092)
T PRK09776 358 EKRYYRRDGEVVWALLAVS-LVRDTDGTPLYFIAQ 391 (1092)
T ss_pred eeEEEcCCCCEEEEEEEEE-EEECCCCCEeeehhh
Confidence 2223467788777654332 345777887765443
No 71
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=77.52 E-value=27 Score=34.74 Aligned_cols=148 Identities=18% Similarity=0.247 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHH
Q 004383 306 FSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFL 385 (757)
Q Consensus 306 LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FL 385 (757)
|+++...-|.. ......++|.........++. +++... + . ...+...++..-+ +.++..+|..|
T Consensus 2 ~~~~~~~~~~~-~~~~~~~~W~~~~~~~~~~~~--~~~~~~---~-~--------~~~~~~~k~~~~v-~~~~~~~~~~~ 65 (206)
T PF01852_consen 2 LAEELMQEELA-LAQEDEDGWKLYKDKKNGDVY--YKKVSP---S-D--------SCPIKMFKAEGVV-PASPEQVVEDL 65 (206)
T ss_dssp HHHHHHHHHHH-HHHHTCTTCEEEEEETTTCEE--EEEEEC---S-S--------STSCEEEEEEEEE-SSCHHHHHHHH
T ss_pred HHHHHHHHHHH-HhhcCCCCCeEeEccCCCeEE--EEEeCc---c-c--------cccceEEEEEEEE-cCChHHHHHHH
Confidence 45555555653 345677899988733334443 444321 1 1 1135567777888 78888777777
Q ss_pred hhhhcccccccccchhhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCccccccccceEEEee
Q 004383 386 REHRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPEDVALARDMYLLQL 465 (757)
Q Consensus 386 Rd~RseWd~~~~d~~sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~~~~~~~~~~llLQe 465 (757)
.+.+.+||.. +. + .+.+-.+ ++++.|.....+..-. ..+.+||..+++-
T Consensus 66 ~~~~~~Wd~~----~~-----~---------------~~~le~~----~~~~~i~~~~~~~~~~---~p~~~RDfv~~~~ 114 (206)
T PF01852_consen 66 LDDREQWDKM----CV-----E---------------AEVLEQI----DEDTDIVYFVMKSPWP---GPVSPRDFVFLRS 114 (206)
T ss_dssp HCGGGHHSTT----EE-----E---------------EEEEEEE----ETTEEEEEEEEE-CTT---TTSSEEEEEEEEE
T ss_pred HhhHhhcccc----hh-----h---------------heeeeec----CCCCeEEEEEecccCC---CCCCCcEEEEEEE
Confidence 7644499984 11 0 2333333 2234554444443221 1245688888887
Q ss_pred ecCCCCCCCCceeEEEeecccCCC-----CCCC--CcccCceEEec
Q 004383 466 CSGIDENTVGACAQLVFAPIDESF-----ADDA--PLLASGFRVIP 504 (757)
Q Consensus 466 ~~~~D~~a~GscS~vVyAPVD~~d-----s~~v--pLLPSGF~IlP 504 (757)
.. .+ ..|+ -.+++..||-.. +..| -+++|||.|-|
T Consensus 115 ~~-~~--~~~~-~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~ 156 (206)
T PF01852_consen 115 WR-KD--EDGT-YVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRP 156 (206)
T ss_dssp EE-EC--TTSE-EEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEE
T ss_pred EE-Ee--ccce-EEEEEeeeccccccccccCcceeeeeeEeEEEEE
Confidence 64 33 4453 355556776652 2333 38899999999
No 72
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=77.46 E-value=15 Score=34.03 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.6
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCcc
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRC 150 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~ 150 (757)
.+..|.-.+..+.++|.|.++|-+..|.
T Consensus 3 ~s~~i~ap~~~V~~~l~D~~~~p~~~p~ 30 (142)
T cd08861 3 HSVTVAAPAEDVYDLLADAERWPEFLPT 30 (142)
T ss_pred EEEEEcCCHHHHHHHHHhHHhhhccCCC
Confidence 3456777899999999999999997784
No 73
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=77.16 E-value=3.7 Score=43.69 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=39.6
Q ss_pred CCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 322 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 322 ~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
..++|..- ...++|+|.++.+. .+++-+.=+-+ ++|++.||++|.| .|.|||..
T Consensus 53 ~~~~W~l~--~~k~gIkVytr~~s-----------------~~l~fk~e~~v-d~s~~~v~dlL~D~~~R~~WD~~ 108 (235)
T cd08873 53 AKSDWTVA--SSTTSVTLYTLEQD-----------------GVLSFCVELKV-QTCASDAFDLLSDPFKRPEWDPH 108 (235)
T ss_pred ccCCCEEE--EcCCCEEEEEecCC-----------------CceEEEEEEEe-cCCHHHHHHHHhCcchhhhhhhc
Confidence 46789854 34578999998732 13333333446 8999999999998 99999974
No 74
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=75.81 E-value=5.5 Score=40.83 Aligned_cols=58 Identities=16% Similarity=0.346 Sum_probs=40.4
Q ss_pred CCCccccccCCCc--ceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 323 DDGWSLLSSDGGE--DVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 323 ~~~W~~l~~~g~e--dVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
+++|.......++ +|+|-.|+.. + . ++.--++...+.++||+.|+++|.| .|.+||..
T Consensus 21 ~~~W~~~~~k~~~~~~i~vy~r~~~----~-s----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 82 (209)
T cd08870 21 GQAWQQVMDKSTPDMSYQAWRRKPK----G-T----------GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDET 82 (209)
T ss_pred CCcceEhhhccCCCceEEEEecccC----C-C----------CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhh
Confidence 3789987653332 3776666543 1 1 2334566677767899999999998 99999974
No 75
>smart00338 BRLZ basic region leucin zipper.
Probab=75.34 E-value=1.2 Score=37.58 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.8
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhccc
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~~ 31 (757)
-|+.||+.|++++++|--||.+||+++.
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999874
No 76
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=72.25 E-value=36 Score=38.30 Aligned_cols=107 Identities=8% Similarity=0.075 Sum_probs=68.3
Q ss_pred HHHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 004383 640 LLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 640 ~~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
..+.++ +.+++|+..+.+ -.++|.|+++.++|+++.+++.+.+....+++.. . ....+.++.+.|-.....-+
T Consensus 263 ~~~~i~~~~~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~ 336 (607)
T PRK11360 263 LNELILESIADGVIAIDRQ----GKITTMNPAAEVITGLQRHELVGKPYSELFPPNT-P-FASPLLDTLEHGTEHVDLEI 336 (607)
T ss_pred HHHHHHHhccCeEEEEcCC----CCEEEECHHHHHHhCCChHHhcCCcHHHHcCCch-h-HHHHHHHHHhcCCCccceEE
Confidence 344454 478888887754 4789999999999999999999988776665432 2 23344455555543333334
Q ss_pred EEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 719 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 719 RiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
++...+....+ ...+=.+.|++|+..|...+|.+
T Consensus 337 ~~~~~~~~~~~-~~~~~~i~~~~g~~~~~i~~~~D 370 (607)
T PRK11360 337 SFPGRDRTIEL-SVSTSLLHNTHGEMIGALVIFSD 370 (607)
T ss_pred EEEcCCCcEEE-EEEEeeEEcCCCCEEEEEEEEee
Confidence 44443333333 23333567888998888777754
No 77
>smart00340 HALZ homeobox associated leucin zipper.
Probab=71.94 E-value=1.7 Score=34.71 Aligned_cols=16 Identities=63% Similarity=0.758 Sum_probs=13.6
Q ss_pred chhhchhhhhhhhhhh
Q 004383 5 LMEENDRLQKQVSHLV 20 (757)
Q Consensus 5 l~een~rl~k~~~ql~ 20 (757)
|-|||.||||++.+|-
T Consensus 17 LteeNrRL~ke~~eLr 32 (44)
T smart00340 17 LTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6799999999998873
No 78
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=71.69 E-value=7.9 Score=39.90 Aligned_cols=58 Identities=21% Similarity=0.428 Sum_probs=43.3
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
-.+.+|..... .++|+|-.|...+ . ++.--++...++.++|+.++++|.| .|.+||..
T Consensus 22 ~~~~~W~l~~~--~~~i~Vy~r~~~~-----s----------~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~ 81 (207)
T cd08910 22 LDGAAWELLVE--SSGISIYRLLDEQ-----S----------GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQY 81 (207)
T ss_pred CCCCCeEEEEe--cCCeEEEEeccCC-----C----------CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHH
Confidence 34467987653 4589998887642 1 3446777788856999999999998 89999984
No 79
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=71.46 E-value=1.3 Score=46.53 Aligned_cols=79 Identities=27% Similarity=0.468 Sum_probs=0.0
Q ss_pred cchhhchhhhhhhhhhhhhcchh-----hhcccc------------CCCC---cCCCCccc--ceecCccccCCCCCCCC
Q 004383 4 LLMEENDRLQKQVSHLVYENGYM-----RQQLHS------------APAT---TTDNSCES--VVMSGQHQQQQNPTPQH 61 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~-----r~~~~~------------~~~~---~~d~s~~s--~v~~~~~~~~~~~~~~~ 61 (757)
.||+||+||.|.+.||.-||+.| ..++.- .... .+-+|.-- +..+|... --+.|+-
T Consensus 140 ~L~aeNErLr~EnkqL~ae~arL~k~~~eke~~~dadfve~selw~lp~~s~~~~~~s~wqkf~~~~gkak--dipip~l 217 (243)
T PF08961_consen 140 FLLAENERLRRENKQLKAENARLLKGPVEKELDVDADFVEKSELWSLPQHSETAAASSTWQKFAANTGKAK--DIPIPNL 217 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhccccchhHhhhccCCCcccccccchhHHHHhhcCCccc--cCcCCCC
Confidence 58999999999999999999988 333331 0100 00011100 11122211 1256777
Q ss_pred CCCCCCCh-hHHHHHHHHHHHHHH
Q 004383 62 PQRDASNP-AGLLAVAEETLAEFL 84 (757)
Q Consensus 62 ~~~d~~~~-~~ll~iAe~am~Efl 84 (757)
||.|.-.| --+|++-|..+.+|+
T Consensus 218 ppld~p~pelpllel~edi~~~~~ 241 (243)
T PF08961_consen 218 PPLDFPSPELPLLELPEDILKGLM 241 (243)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcCCcccCcHHHHHHhc
Confidence 88887444 457888888888775
No 80
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=71.42 E-value=51 Score=33.91 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=40.8
Q ss_pred CCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 322 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 322 ~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
-..+|..... .++|+|-.|...+ . ++.--++...+.++|++.++++|.| .|.+||..
T Consensus 19 ~~~~W~l~~~--~~~i~Vy~r~~~~-----s----------~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~ 77 (207)
T cd08911 19 EPDGWEPFIE--KKDMLVWRREHPG-----T----------GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDAT 77 (207)
T ss_pred cCCCcEEEEE--cCceEEEEeccCC-----C----------CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhh
Confidence 4456987653 4569988887652 1 1223555455558999999999998 99999974
No 81
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=70.24 E-value=21 Score=42.70 Aligned_cols=103 Identities=12% Similarity=-0.014 Sum_probs=67.1
Q ss_pred HHHHhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccC--C--C
Q 004383 641 LKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL--P--G 716 (757)
Q Consensus 641 ~k~L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~--y--~ 716 (757)
..++-+.+++++..+.+ -.++|.|+++.++|+++-+|+.+-+...-..+..+......+.++...|-... + .
T Consensus 15 ~~~le~~~~~i~~~d~~----g~i~~~N~~~~~l~G~s~eeliG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 90 (799)
T PRK11359 15 FPALEQNMMGAVLINEN----DEVLFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRE 90 (799)
T ss_pred HHHHHhhcCcEEEEcCC----CeEEEEcHHHHHHhCCCHHHHcCCCHHHhcCccccccchHHHhhhhccCCcccccccee
Confidence 34555688888876644 57999999999999999999999877766655555444445555544443211 1 1
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEE
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAF 749 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa 749 (757)
-....+.|++++++-.. ..++.+|...+.+.
T Consensus 91 ~~~~~~dG~~~~v~~~~--~~~~~~g~~~~~~~ 121 (799)
T PRK11359 91 LQLEKKDGSKIWTRFAL--SKVSAEGKVYYLAL 121 (799)
T ss_pred eEEecCCcCEEEEEEEe--eeeccCCceEEEEE
Confidence 12346788888876433 44566777665443
No 82
>PRK09776 putative diguanylate cyclase; Provisional
Probab=68.60 E-value=31 Score=43.04 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=66.4
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCCh---hcHHHHHHHHHHHHHhc-cccCCCe-eEE
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDE---AGRKILCTEFAKIMQQG-FAYLPGG-MCV 720 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~---~~R~eR~~lL~~v~~qG-~~~~y~G-vRi 720 (757)
..+++|+..+.+ =.++|.|+++.++++++-+|+.+.|....... ...+.... +.+..+.+ -.+.... ...
T Consensus 544 ~~~~~i~~~D~~----g~i~~~N~a~~~l~G~~~~e~iG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 618 (1092)
T PRK09776 544 SIGEAVVCTDMA----MKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPLMEN-IYSCLTSRSAAYLEQDVVLH 618 (1092)
T ss_pred ccccEEEEECCC----CeEEEEcHHHHHHhCCCHHHHcCCCHHHHcccccCCcchhhHH-HHHHHhcCCCccccceEEEE
Confidence 367888877654 46999999999999999999999886543321 11222222 33333222 1111122 345
Q ss_pred ccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 721 SSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 721 Ss~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.+.|++++++ ..+-.+.|++|...|.-.++.+
T Consensus 619 ~~~G~~~~~~-~~~~pi~~~~g~~~g~v~~~~D 650 (1092)
T PRK09776 619 CRSGGSYDVH-YSITPLSTLDGENIGSVLVIQD 650 (1092)
T ss_pred eCCCcEEEEE-EEeeeeecCCCCEEEEEEEEEe
Confidence 7889998886 3566778999999887777654
No 83
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=67.57 E-value=78 Score=33.05 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=36.9
Q ss_pred CccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhhhhcccccc
Q 004383 325 GWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADY 395 (757)
Q Consensus 325 ~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd~RseWd~~ 395 (757)
+|..++ ..+.|.++.+|..+ + . .+.--++++-+ |.+|+.|+..|-|-|.+||..
T Consensus 28 ~w~~~~--~~~~~el~~~k~~~---g-s----------~l~~~r~~~~i-~a~~~~vl~~lld~~~~Wd~~ 81 (204)
T cd08908 28 GWVSYS--TSEQAELSYKKVSE---G-P----------PLRLWRTTIEV-PAAPEEILKRLLKEQHLWDVD 81 (204)
T ss_pred CCcccC--CCCcEEEEEeccCC---C-C----------CcEEEEEEEEe-CCCHHHHHHHHHhhHHHHHHH
Confidence 677663 36779999998642 2 2 35666777888 677777665555449999974
No 84
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=67.45 E-value=8.8 Score=40.96 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=43.6
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
...++|..- ...++|+|-++. + . .+++-++-+-+ ++|++.+|++|.| .|.+||..
T Consensus 53 a~~~~W~l~--~dkdgIkVytr~--~-----s----------~~l~fk~e~~v-dvs~~~l~~LL~D~~~r~~Wd~~ 109 (236)
T cd08914 53 AAKSGWEVT--STVEKIKIYTLE--E-----H----------DVLSVWVEKHV-KRPAHLAYRLLSDFTKRPLWDPH 109 (236)
T ss_pred cccCCCEEE--EccCCEEEEEec--C-----C----------CcEEEEEEEEE-cCCHHHHHHHHhChhhhchhHHh
Confidence 457899854 345789999984 1 1 25788888888 8999999999998 99999974
No 85
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=66.68 E-value=9.9 Score=39.14 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=41.0
Q ss_pred CCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh----hhcccccc
Q 004383 322 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE----HRSEWADY 395 (757)
Q Consensus 322 ~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd----~RseWd~~ 395 (757)
..++|.... + .++|+|.++++.+. + |-+ -++-.-+ |++|+.+|++|.| .|.+||..
T Consensus 20 ~~~~W~~~~-~-~~~i~v~~~~~~~~--~-----------~~~--~k~e~~i-~~s~~~~~~~l~d~~~~~r~~W~~~ 79 (208)
T cd08903 20 DESGWKTCR-R-TNEVAVSWRPSAEF--A-----------GNL--YKGEGIV-YATLEQVWDCLKPAAGGLRVKWDQN 79 (208)
T ss_pred cccCCEEEE-c-CCCEEEEeeecCCC--C-----------CcE--EEEEEEe-cCCHHHHHHHHHhccchhhhhhhhc
Confidence 567999765 3 36999999987531 1 222 4455666 8999999999984 68999973
No 86
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=66.10 E-value=1e+02 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=29.1
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeec
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIP 158 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~ 158 (757)
.+-.|...+.++-+.|.|...|.+-+|.+.-++...
T Consensus 6 ~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~ 41 (139)
T PF10604_consen 6 VSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLS 41 (139)
T ss_dssp EEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEE
T ss_pred EEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcc
Confidence 345778889999999999999999899887776665
No 87
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=64.27 E-value=37 Score=30.27 Aligned_cols=97 Identities=11% Similarity=-0.016 Sum_probs=61.9
Q ss_pred CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCe
Q 004383 647 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 726 (757)
Q Consensus 647 ~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRr 726 (757)
-|.+++-.+.. =.+.|-|++|.+.|... ....+-|..--..+..++.....+.++...+= ...-+.+...||.
T Consensus 8 ~~~~i~~vD~~----~~I~~~n~~a~~~f~~~-~~~iGr~l~~~~~~~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~ 80 (106)
T PF13596_consen 8 MPIGIIFVDRN----LRIRYFNPAAARLFNLS-PSDIGRPLFDIHPPLSYPNLKKIIEQVRSGKE--EEFEIVIPNGGRW 80 (106)
T ss_dssp SSSEEEEEETT----SBEEEE-SCGC-SS----GGGTTSBCCCSS-HHHHHHHHHHHHHHHTTSB--SEEEEEEEETTEE
T ss_pred CCCCEEEEcCC----CeEEEeChhHhhhcCCC-hHHCCCCHHHcCCccchHHHHHHHHHHHcCCC--ceEEEEecCCCEE
Confidence 56676666543 57899999999999966 45567777766666667777777777765442 1123345566777
Q ss_pred EEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 727 VSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 727 f~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
|.+ .+=-+.|++|++.|...+|.+
T Consensus 81 ~~~---~~~P~~~~~g~~~G~v~~~~D 104 (106)
T PF13596_consen 81 YLV---RYRPYRDEDGEYAGAVITFQD 104 (106)
T ss_dssp EEE---EEEEEE-TTS-EEEEEEEEEE
T ss_pred EEE---EEEEEECCCCCEEEEEEEEEe
Confidence 666 556677999999999999965
No 88
>PRK10724 hypothetical protein; Provisional
Probab=63.54 E-value=1.2e+02 Score=30.08 Aligned_cols=134 Identities=10% Similarity=0.191 Sum_probs=75.2
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
+.+.+|.-.+.++.+.+.|.++|-+..|-..-..++....++ +.+++.+--.- .++-|+-|+... .++ .+..
T Consensus 18 ~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~----~~a~l~v~~~g--~~~~f~srv~~~-~~~-~I~~ 89 (158)
T PRK10724 18 SRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ----MTAAVDVSKAG--ISKTFTTRNQLT-SNQ-SILM 89 (158)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE----EEEEEEEeeCC--ccEEEEEEEEec-CCC-EEEE
Confidence 556888889999999999999999887765444444433333 23454332222 244443344332 333 3222
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHH--HHHHHHHHHH
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKIL--AQKMTMAAMR 279 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~af--garrw~aaLr 279 (757)
..+++ | |. .+=.-.-++|.++|.|+|+.--++|+.. .++.++. +..| .+++-+.|.+
T Consensus 90 -~~~~G----p-------F~---~l~g~W~f~p~~~~~t~V~~~l~fef~s----~l~~~~~--~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 90 -QLVDG----P-------FK---KLIGGWKFTPLSQEACRIEFHLDFEFTN----KLIELAF--GRVFKELASNMVQAFT 148 (158)
T ss_pred -EecCC----C-------hh---hccceEEEEECCCCCEEEEEEEEEEEch----HHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22222 2 11 2334445778888889999988888553 3334444 3333 5566666663
Q ss_pred -HHhhh
Q 004383 280 -HIRQI 284 (757)
Q Consensus 280 -~~erl 284 (757)
.++.+
T Consensus 149 ~Ra~~~ 154 (158)
T PRK10724 149 VRAKEV 154 (158)
T ss_pred HHHHHH
Confidence 45443
No 89
>PRK13560 hypothetical protein; Provisional
Probab=60.73 E-value=66 Score=38.23 Aligned_cols=107 Identities=15% Similarity=0.076 Sum_probs=61.2
Q ss_pred HHHHhc-CCCeEEecCCCCCCCCeeEcc-cHHHHHhhccCHHHHhcccccccCChhcHHHH------------------H
Q 004383 641 LKQLWH-HSDAIMCCSLKTNASPVFTFA-NQAGLDMLETTLVALQDIMLDKILDEAGRKIL------------------C 700 (757)
Q Consensus 641 ~k~L~~-~~~aIl~h~~~~~~dPvF~YA-N~aAL~m~E~tw~el~~lpsr~sae~~~R~eR------------------~ 700 (757)
++.++. .|++|+..+.+ -.++|. |.++.++|+++.+++.+.+.....++ .+++. .
T Consensus 334 l~~l~~~~~~~i~~~d~~----g~i~~~nn~~~~~~~G~~~~e~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 408 (807)
T PRK13560 334 LRAIIEAAPIAAIGLDAD----GNICFVNNNAAERMLGWSAAEVMGKPLPGMDPE-LNEEFWCGDFQEWYPDGRPMAFDA 408 (807)
T ss_pred HHHHHHhCcccEEEEcCC----CCEEEecCHHHHHHhCCCHHHHcCCCccccChh-hhhhhhhchhhhcCCcCCcchhhh
Confidence 445544 67777766544 345665 67788899999999998775432221 11111 0
Q ss_pred HHHHHHHHhccccCCCee-EEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 701 TEFAKIMQQGFAYLPGGM-CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 701 ~lL~~v~~qG~~~~y~Gv-RiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
..+.+..++|-.....-+ ...+.|+.+++. ..+-.+.|++|+..|.-.++.+
T Consensus 409 ~~~~~~~~~~~~~~~~e~~~~~~~g~~~~~~-~~~~p~~d~~g~~~~~~~~~~D 461 (807)
T PRK13560 409 CPMAKTIKGGKIFDGQEVLIEREDDGPADCS-AYAEPLHDADGNIIGAIALLVD 461 (807)
T ss_pred hhHHHHHhcCCcccCceEEEEcCCCCeEEEE-EEEeeeECCCCCEEEEEEEeeh
Confidence 112333444443322223 334567766653 3455677999998887666543
No 90
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=59.98 E-value=1.3e+02 Score=27.01 Aligned_cols=37 Identities=11% Similarity=-0.044 Sum_probs=29.2
Q ss_pred eeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccC
Q 004383 124 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTG 160 (757)
Q Consensus 124 ~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g 160 (757)
+..|...+.++-++|.|.++|.+-.|.+..+..++.+
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~ 40 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDG 40 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCC
Confidence 4456778899999999999999888887666665544
No 91
>smart00091 PAS PAS domain. PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels ([1]; Ponting & Aravind, in press).
Probab=59.39 E-value=36 Score=23.19 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=38.0
Q ss_pred HHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHH
Q 004383 642 KQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFA 704 (757)
Q Consensus 642 k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~ 704 (757)
+.+++ .++.++..+.+ -.+.|.|..+.++++++..++.+.+......+..++.....+.
T Consensus 4 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (67)
T smart00091 4 RAILESLPDGIFVLDLD----GRILYANPAAEELLGYSPEELIGKSLLELIHPEDREEVQEALQ 63 (67)
T ss_pred HHHHhhCCceEEEEcCC----CeEEEECHHHHHHhCCCHHHHcCCcHHHhcCcccHHHHHHHHH
Confidence 34443 45555555433 4578899999999999999988776655555555543333333
No 92
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=55.84 E-value=34 Score=36.18 Aligned_cols=65 Identities=22% Similarity=0.391 Sum_probs=47.2
Q ss_pred HhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEE-EEEEeeccccCChHHHHHHHhh--hhc
Q 004383 314 FNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVL-CAKASMLLQNVPPALLVRFLRE--HRS 390 (757)
Q Consensus 314 F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VL-cA~tS~~L~pvpP~~lf~FLRd--~Rs 390 (757)
+.-|.-+-.+++|..... .++|+|-.|...+ . |.++ .-++..-++.++++.++++|.| .|.
T Consensus 16 ~~~~~~~~~~~~W~l~~~--~~gikVy~r~~~~---s-----------g~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~ 79 (235)
T cd08872 16 LTYALEDVGADGWQLFAE--EGEMKVYRREVEE---D-----------GVVLDPLKATHAVKGVTGHEVCHYFFDPDVRM 79 (235)
T ss_pred HHHHHccCCCCCCEEEEe--CCceEEEEEECCC---C-----------CceeeeEEEEEEECCCCHHHHHHHHhChhhHH
Confidence 334455666779997653 5679998887652 1 1222 4677788867999999999998 999
Q ss_pred cccc
Q 004383 391 EWAD 394 (757)
Q Consensus 391 eWd~ 394 (757)
+||.
T Consensus 80 ~Wd~ 83 (235)
T cd08872 80 DWET 83 (235)
T ss_pred HHHh
Confidence 9997
No 93
>PHA03162 hypothetical protein; Provisional
Probab=54.93 E-value=5.8 Score=38.75 Aligned_cols=23 Identities=17% Similarity=0.450 Sum_probs=20.6
Q ss_pred hhhhhhhhhhhhhcchhhhcccc
Q 004383 10 DRLQKQVSHLVYENGYMRQQLHS 32 (757)
Q Consensus 10 ~rl~k~~~ql~~en~~~r~~~~~ 32 (757)
|.|++++.+|-+||..||+||..
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~~ 38 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIKE 38 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999953
No 94
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=54.31 E-value=1.8e+02 Score=30.01 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHH
Q 004383 304 RTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR 383 (757)
Q Consensus 304 ~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~ 383 (757)
.++++.....|-.-.+ ..++|.... .+.++++|.++..++ . | ---++-.-+ |+|++.|++
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~W~~~~-~~~~gi~v~s~~~~~-----~---------~--k~~k~e~~i-~~~~~~l~~ 66 (209)
T cd08905 7 IKQGEEALQKSLSILQ--DQEGWKTEI-VAENGDKVLSKVVPD-----I---------G--KVFRLEVVV-DQPLDNLYS 66 (209)
T ss_pred HHHHHHHHHHHHHHhc--cccCCEEEE-ecCCCCEEEEEEcCC-----C---------C--cEEEEEEEe-cCCHHHHHH
Confidence 3444554444444442 446899663 335677888766542 1 1 233455667 899999997
Q ss_pred HHhh---hhcccccc
Q 004383 384 FLRE---HRSEWADY 395 (757)
Q Consensus 384 FLRd---~RseWd~~ 395 (757)
+|.+ .+.+|+..
T Consensus 67 ~l~~d~e~~~~W~~~ 81 (209)
T cd08905 67 ELVDRMEQMGEWNPN 81 (209)
T ss_pred HHHhchhhhceeccc
Confidence 7774 89999973
No 95
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=53.54 E-value=3e+02 Score=29.10 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=39.5
Q ss_pred CCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 321 FLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 321 s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
-..++|..-... +||.|..+++++ .+|...- ++ +|+ +.-|+.|++|+++ +|.+||..
T Consensus 20 ~~~~~Wkl~k~~--~~~~v~~k~~~e--f~gkl~R-~E----gvv---------~~~~~ev~d~v~~~~~r~~Wd~~ 78 (202)
T cd08902 20 ILEEEWRVAKKS--KDVTVWRKPSEE--FGGYLYK-AQ----GVV---------EDVYNRIVDHIRPGPYRLDWDSL 78 (202)
T ss_pred ccccCcEEEEeC--CCEEEEEecCCc--CCCceEE-EE----EEe---------cCCHHHHHHHHhcccchhcccch
Confidence 367899876433 899999998863 2333100 11 343 5778999999998 89999973
No 96
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=52.89 E-value=6.3 Score=37.94 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=22.1
Q ss_pred hhhhhhhhhhhhhcchhhhccccCC
Q 004383 10 DRLQKQVSHLVYENGYMRQQLHSAP 34 (757)
Q Consensus 10 ~rl~k~~~ql~~en~~~r~~~~~~~ 34 (757)
|.|++++.+|-+||..||+||.+.+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccC
Confidence 4699999999999999999998554
No 97
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=50.57 E-value=52 Score=34.02 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=37.3
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCC
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILD 692 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae 692 (757)
++.++ +.|+.|+..+.+ -..+|+|+++.++|++++++..+.+......
T Consensus 8 l~~~~~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~ 56 (333)
T TIGR02966 8 FRAAAQALPDAVVVLDEE----GQIEWCNPAAERLLGLRWPDDLGQRITNLIR 56 (333)
T ss_pred HHHHHHhCcCcEEEECCC----CcEEEEcHHHHHHhCCChHHHcCCcHHHHcc
Confidence 44444 478888887765 3599999999999999999999877665543
No 98
>COG1415 Uncharacterized conserved protein [Function unknown]
Probab=48.40 E-value=91 Score=35.36 Aligned_cols=126 Identities=24% Similarity=0.144 Sum_probs=91.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH----------------------HHHHHhhCCCCCCCCCCC-hHHHH-HHHhcCC
Q 004383 593 SRLGPHAGPKALPGSPEALTLARWIS----------------------RSYRIHTGGELLRADSLT-GDALL-KQLWHHS 648 (757)
Q Consensus 593 s~~~~~~~~~~p~~~pea~~la~~i~----------------------~SYr~~~G~~L~~~~~~~-~~~~~-k~L~~~~ 648 (757)
+.|.-|.|-.|||.-+.+..|+..|+ |||-..+|.|--.+.+.+ .-..+ +.|+.-.
T Consensus 7 AdLPLH~GhvP~wL~~rM~kLs~~i~elive~yG~~e~l~RlAdP~WFQsf~nviGmDW~SSGsTTv~~gaLK~~l~~~d 86 (373)
T COG1415 7 ADLPLHTGHVPPWLLPRMKKLSGAILELIVEEYGTDELLRRLADPFWFQSFNNVIGMDWDSSGSTTVTTGALKEALNPED 86 (373)
T ss_pred ccccccCCCCChHHHHHHHHHHHHHHHHHHHHhCcHHHHHHhcCcHHHHHHhhhhcccccCCCCeeeeHHHHHHhcCccc
Confidence 35677888899999999999888665 566677787764443322 13334 4667777
Q ss_pred CeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH----HHHhccccCC-CeeEEccC
Q 004383 649 DAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK----IMQQGFAYLP-GGMCVSSM 723 (757)
Q Consensus 649 ~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~----v~~qG~~~~y-~GvRiSs~ 723 (757)
.-|..|++| |-.+.+| -+|+..+--+.-+|+.+=.+-.++-++ +.|.|| ++| .++=+|..
T Consensus 87 lgi~V~GGK-------------G~~~~~t-p~El~~~ae~~~ld~~~l~~~SRlvAKvDn~~lQDGy-dLYhH~~vvse~ 151 (373)
T COG1415 87 LGIKVAGGK-------------GRNARKT-PDELESIAERFGLDAEKLVEASRLVAKVDNVLLQDGY-DLYHHTFVVSED 151 (373)
T ss_pred CceEEecCc-------------chhhccC-hHHHHHHHHHhCCCHHHHHHHHHHHHHhhhHHHhcch-hheeEEEEEcCC
Confidence 888889998 3344444 467777777777777777777777776 578999 666 59999999
Q ss_pred CCeEEEcceE
Q 004383 724 GRAVSYEQAV 733 (757)
Q Consensus 724 GRrf~ie~A~ 733 (757)
|+-.-|.|+.
T Consensus 152 G~w~VIQQGM 161 (373)
T COG1415 152 GRWAVIQQGM 161 (373)
T ss_pred CCEEEEEcCc
Confidence 9999998865
No 99
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=48.39 E-value=44 Score=37.25 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=39.2
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCC
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILD 692 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae 692 (757)
..++.+++ .|++|+..+. +-.+.|.|++|.++|++++++..+.+......
T Consensus 98 ~~~~~~~~~~~~~i~~~d~----~g~i~~~N~~a~~l~g~~~~~~~g~~~~~~~~ 148 (430)
T PRK11006 98 KRFRSGAESLPDAVVLTTE----EGNIFWCNGLAQQLLGFRWPEDNGQNILNLLR 148 (430)
T ss_pred HHHHHHHHhCCCeEEEEcC----CCceeHHHHHHHHHhCCCChHhCCCcHHHHhc
Confidence 44666664 7888888764 46899999999999999999998887654443
No 100
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=46.75 E-value=2.2e+02 Score=25.64 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=29.6
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCee
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTI 165 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~l 165 (757)
.+..|...+.++-+.|.|...|.+.++.+......+.+.|+..
T Consensus 4 ~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~ 46 (141)
T cd07822 4 TEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARL 46 (141)
T ss_pred EEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEE
Confidence 4566777899999999999999888876644443222344443
No 101
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=45.29 E-value=1.2e+02 Score=35.77 Aligned_cols=99 Identities=14% Similarity=0.219 Sum_probs=65.4
Q ss_pred HHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 004383 641 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 719 (757)
Q Consensus 641 ~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR 719 (757)
++.+++ -+++|++.+.+ . ..+|.|++|.++|+++-+++.+-|..--.... .+.++.++|-.. .....
T Consensus 82 L~aIL~sm~eGVi~vD~~--G--~I~~iN~aA~~Llg~~~eel~Gk~i~eli~~~-------~l~~~le~~~~~-~~~~~ 149 (520)
T PRK10820 82 LSALLEALPEPVLSIDMK--G--KVELANPASCQLFGQSEEKLRNHTAAQLINGF-------NFLRWLESEPQD-SHNEH 149 (520)
T ss_pred HHHHHHhCCCcEEEECCC--C--eeeHhHHHHHHHHCcCHHHHCCCcHHHHcCcc-------hHHHHHHcCCCc-cceEE
Confidence 455555 69999999887 4 58999999999999998888887765444332 244566666542 22355
Q ss_pred EccCCCeEEEcceEEeEeecCCCCe--eEEEEEec
Q 004383 720 VSSMGRAVSYEQAVAWKVLDDDDSN--HCLAFMFM 752 (757)
Q Consensus 720 iSs~GRrf~ie~A~vW~v~D~~g~~--~GqAa~F~ 752 (757)
+...|+.|.++-.-+. +-|++|.. .|.-.+|.
T Consensus 150 v~~~g~~~~v~~~PI~-~~d~~g~~~~~GaVivlr 183 (520)
T PRK10820 150 VVINGQDFLMEITPVY-LQDENDQHVLVGAVVMLR 183 (520)
T ss_pred EEECCEEEEEEEEeee-ecCCCCceeEEEEEEEec
Confidence 6667887765433332 22666664 67666664
No 102
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.79 E-value=2.2e+02 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.222 Sum_probs=21.3
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCc
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCR 149 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~ 149 (757)
..+..|.-.+.++-+++-|...|-+-.|
T Consensus 5 ~~s~~I~ap~e~V~~~i~D~~~~~~W~p 32 (150)
T cd07818 5 ERSIVINAPPEEVFPYVNDLKNWPEWSP 32 (150)
T ss_pred EEEEEEeCCHHHHHHHHhCcccCcccCc
Confidence 3455678889999999999988766433
No 103
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=44.32 E-value=2.8e+02 Score=26.18 Aligned_cols=34 Identities=15% Similarity=-0.026 Sum_probs=28.7
Q ss_pred eeEEeeChhhhhhhhcCcchhhhhCccceeeeee
Q 004383 124 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVI 157 (757)
Q Consensus 124 ~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~ 157 (757)
+-.|...|.++-++|.|.+.|.+-.|.++.+...
T Consensus 4 ~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~ 37 (146)
T cd07823 4 EFTVPAPPDRVWALLLDIERVAPCLPGASLTEVE 37 (146)
T ss_pred eEEecCCHHHHHHHhcCHHHHHhcCCCceecccc
Confidence 4457788999999999999999988988777664
No 104
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=43.41 E-value=8.4 Score=41.09 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=26.9
Q ss_pred cccchhhchhhhhhhhhhhhhcchhhhccc
Q 004383 2 NKLLMEENDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 2 nk~l~een~rl~k~~~ql~~en~~~r~~~~ 31 (757)
|..|--|||+|+.+..-|+.+|+.+++.|.
T Consensus 106 n~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 106 NEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 667888999999999999999999988776
No 105
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=41.96 E-value=67 Score=32.68 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHH
Q 004383 304 RTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR 383 (757)
Q Consensus 304 ~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~ 383 (757)
-++.|.+..-+.. .++|.... ..++|+|.+++..+ . .+-+ -++..-+ |.+|+.+|+
T Consensus 8 ~~~~~~~~~~~~~------~~~W~~~~--~~~~i~v~~~~~~~-----~--------~~~~--~k~~~~i-~~~~~~v~~ 63 (206)
T cd08867 8 EKLANEALQYIND------TDGWKVLK--TVKNITVSWKPSTE-----F--------TGHL--YRAEGIV-DALPEKVID 63 (206)
T ss_pred HHHHHHHHHHhcC------cCCcEEEE--cCCCcEEEEecCCC-----C--------CCEE--EEEEEEE-cCCHHHHHH
Confidence 3455555555542 27999764 34789999985431 1 1212 3666777 799999999
Q ss_pred HHhh----hhccccc
Q 004383 384 FLRE----HRSEWAD 394 (757)
Q Consensus 384 FLRd----~RseWd~ 394 (757)
+|.+ .|.+||.
T Consensus 64 ~l~d~~~~~r~~Wd~ 78 (206)
T cd08867 64 VIIPPCGGLRLKWDK 78 (206)
T ss_pred HHHhcCccccccccc
Confidence 9996 7999996
No 106
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.63 E-value=3.1e+02 Score=25.90 Aligned_cols=114 Identities=16% Similarity=0.180 Sum_probs=61.0
Q ss_pred EEeeChhhhhhhhcCcchhhhhCccceeeeeecc-CC---CCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 126 LVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPT-GN---GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 126 lV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~-g~---~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
.+...+.++-+++.|.++|-+-.+.++-+.++.. +. ++..+. .+ ....|.+.-+..|+...-....+++-
T Consensus 8 ~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~-~~-----~~~~~~~~~~~~~v~~~~p~~~~~~~ 81 (146)
T cd07824 8 RIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRY-TW-----RGLLPYRLRFELRVTRIEPLSLLEVR 81 (146)
T ss_pred EecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEE-EE-----EecCCcEEEEEEEEEeecCCcEEEEE
Confidence 4556788999999999998888887766666552 22 223321 11 11123233334455544444455442
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCC---cccccchhhhc
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAW---SVPEVLRPLYE 264 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~---~V~el~RpL~~ 264 (757)
. ++. . ....+ +-+++-++ +|+|++-.+++...- -...++.+++.
T Consensus 82 -~--~g~---~-----~~~~~-------~~~~~~~~-gt~vt~~~~~~~~~~~~~~l~~l~~~l~~ 128 (146)
T cd07824 82 -A--SGD---L-----EGVGR-------WTLAPDGS-GTVVRYDWEVRTTKPWMNLLAPLARPVFR 128 (146)
T ss_pred -E--EEe---e-----eEEEE-------EEEEEcCC-CEEEEEEEEEEcCHHHHHhhhHhhhhHHH
Confidence 2 221 0 00011 23677544 599999888886532 23445555543
No 107
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=37.90 E-value=14 Score=34.88 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=24.3
Q ss_pred chhhchhhhhhhhhhhhhcchhhhccc
Q 004383 5 LMEENDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 5 l~een~rl~k~~~ql~~en~~~r~~~~ 31 (757)
+.+||++|.|++.||-.||-+||.-+.
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~ 102 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVE 102 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999998764
No 108
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=36.65 E-value=15 Score=40.04 Aligned_cols=28 Identities=32% Similarity=0.328 Sum_probs=21.0
Q ss_pred chhhchhhhhhhhhh-----------hhhcchhhhcccc
Q 004383 5 LMEENDRLQKQVSHL-----------VYENGYMRQQLHS 32 (757)
Q Consensus 5 l~een~rl~k~~~ql-----------~~en~~~r~~~~~ 32 (757)
|.+||++|.+|+.+| --||..||+.|.-
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 678999998876544 5678888887763
No 109
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=35.81 E-value=15 Score=42.62 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=25.8
Q ss_pred hhhchhhhhhhhhhhhhcchhhhccccC
Q 004383 6 MEENDRLQKQVSHLVYENGYMRQQLHSA 33 (757)
Q Consensus 6 ~een~rl~k~~~ql~~en~~~r~~~~~~ 33 (757)
-+||-.|||||.+|=.+|..|-|||++.
T Consensus 285 taeNqeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 285 TAENQELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred ccCcHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3699999999999999999999999874
No 110
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=34.92 E-value=1.9e+02 Score=35.84 Aligned_cols=97 Identities=18% Similarity=0.275 Sum_probs=53.5
Q ss_pred cCChHHHHHHHhh---hhcccccccccchhhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCc
Q 004383 375 NVPPALLVRFLRE---HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSP 451 (757)
Q Consensus 375 pvpP~~lf~FLRd---~RseWd~~~~d~~sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~ 451 (757)
+.+|+.||++|-+ .|.|||.. +. .| +.+-+| +...+|.-.++...-.
T Consensus 236 ~aspE~Ifd~Vm~~~~~R~eWD~~----~~---------------~~-----~vIE~I----D~htdI~Y~~~~~~~~-- 285 (719)
T PLN00188 236 EATCEEIFELVMSMDGTRFEWDCS----FQ---------------YG-----SLVEEV----DGHTAILYHRLQLDWF-- 285 (719)
T ss_pred cCCHHHHHHHHhccCcccccchhc----cc---------------ce-----EEEEEe----cCCeEEEEEEeccccc--
Confidence 7899999999973 99999974 11 12 233222 2233443233321100
Q ss_pred cccccccceEEEeeecCCCCCCCCceeEEE-eecccCCC----CCCC--CcccCceEEecCC
Q 004383 452 EDVALARDMYLLQLCSGIDENTVGACAQLV-FAPIDESF----ADDA--PLLASGFRVIPLD 506 (757)
Q Consensus 452 ~~~~~~~~~llLQe~~~~D~~a~GscS~vV-yAPVD~~d----s~~v--pLLPSGF~IlP~~ 506 (757)
-..+-+||-.++.-- --+ ..| ++++ |-+|.-.. +.+| -+-|+||.|.|+.
T Consensus 286 ~~~ispRDFV~~Ryw-rr~--eDG--sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~ 342 (719)
T PLN00188 286 PMFVWPRDLCYVRYW-RRN--DDG--SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLK 342 (719)
T ss_pred cCccCcceeEEEEEE-EEc--CCC--cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECC
Confidence 012335777777663 222 556 4554 44454432 2333 3779999999974
No 111
>PHA03155 hypothetical protein; Provisional
Probab=33.31 E-value=18 Score=34.66 Aligned_cols=65 Identities=26% Similarity=0.311 Sum_probs=40.6
Q ss_pred hhhhhhhhhhhhhcchhhhccccCCCCcCCCCcccceecCccccCCCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHh
Q 004383 10 DRLQKQVSHLVYENGYMRQQLHSAPATTTDNSCESVVMSGQHQQQQNPTPQHPQRDA---SNPAGLLAVAEETLAEFLSK 86 (757)
Q Consensus 10 ~rl~k~~~ql~~en~~~r~~~~~~~~~~~d~s~~s~v~~~~~~~~~~~~~~~~~~d~---~~~~~ll~iAe~am~Efl~~ 86 (757)
|.|+|++.+|-+||..||++|...+. . + |..+|-. .+++ +--..|.+-|.+=+++=+.+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~~-p-~---d~~LT~~-------------qKea~I~s~v~~Lt~~A~~KIe~kVrk 72 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHGN-P-E---DELLTPA-------------QKDAIINSLVNKLTKKAEEKIRERVLK 72 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC-C-C---ccccCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999999954331 1 1 2333322 2333 11345666677777776776
Q ss_pred hcCCCc
Q 004383 87 ATGTAV 92 (757)
Q Consensus 87 At~~~p 92 (757)
.+...+
T Consensus 73 ~~~~~v 78 (115)
T PHA03155 73 DLLPLV 78 (115)
T ss_pred HHhhhc
Confidence 655544
No 112
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=31.50 E-value=17 Score=38.84 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=18.3
Q ss_pred cccchhhchhhhhhhh---hhhhhcchhhhccc
Q 004383 2 NKLLMEENDRLQKQVS---HLVYENGYMRQQLH 31 (757)
Q Consensus 2 nk~l~een~rl~k~~~---ql~~en~~~r~~~~ 31 (757)
||-|.+||++|+.+.. +|--||..||+.|.
T Consensus 78 n~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 78 NEELKKELLELESRLQELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555554 44677778888776
No 113
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.07 E-value=16 Score=34.55 Aligned_cols=20 Identities=50% Similarity=0.775 Sum_probs=0.0
Q ss_pred chhhchhhhhhhhhhhhhcchhhhccc
Q 004383 5 LMEENDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 5 l~een~rl~k~~~ql~~en~~~r~~~~ 31 (757)
|+|||.+|+ +||.+||.+|.
T Consensus 34 l~EEN~~L~-------~EN~~Lr~~l~ 53 (107)
T PF06156_consen 34 LLEENARLR-------IENEHLRERLE 53 (107)
T ss_pred HHHHHHHHH-------HHHHHHHHHHH
No 114
>PF05559 DUF763: Protein of unknown function (DUF763); InterPro: IPR008482 This family consists of several uncharacterised bacterial and archaeal proteins of unknown function.
Probab=31.03 E-value=2.4e+02 Score=31.73 Aligned_cols=125 Identities=24% Similarity=0.109 Sum_probs=76.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH----------------------hhCCCCCCCCCCC-hHHHHHH-HhcCC
Q 004383 593 SRLGPHAGPKALPGSPEALTLARWISRSYRI----------------------HTGGELLRADSLT-GDALLKQ-LWHHS 648 (757)
Q Consensus 593 s~~~~~~~~~~p~~~pea~~la~~i~~SYr~----------------------~~G~~L~~~~~~~-~~~~~k~-L~~~~ 648 (757)
..|.-|.|..|||.-..+..|++.|++.--. .+|.|-=.+...+ .-..+|. |+...
T Consensus 3 adLPLH~G~vP~wL~~RM~kL~~~I~~~iv~eyG~~e~l~RlsdP~WFQaf~~viGmDW~SSGsTTv~~gaLKe~l~~~d 82 (319)
T PF05559_consen 3 ADLPLHGGHVPPWLFERMKKLGRAIVEAIVEEYGPDELLRRLSDPFWFQAFNNVIGMDWHSSGSTTVVLGALKEALNPKD 82 (319)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhChHHHHHHhcCcHHHHHHhHHhcCCccCCcHHHHHHHHHHHhcCccc
Confidence 3566788999999999999999888765444 4444432221111 1233443 34344
Q ss_pred CeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH----HHHhccccCCC-eeEEccC
Q 004383 649 DAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK----IMQQGFAYLPG-GMCVSSM 723 (757)
Q Consensus 649 ~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~----v~~qG~~~~y~-GvRiSs~ 723 (757)
.-|..|++| |-..++ |-+|+..+.-+..+++.+=..-.++-+| +.|+|| ++|- .+=+|++
T Consensus 83 lGi~V~GGK-------------G~~sr~-tP~El~~~~~~~gld~~~L~~~SRL~AKVDn~alQDGy-~LY~H~fivs~~ 147 (319)
T PF05559_consen 83 LGIYVAGGK-------------GKHSRK-TPEELEEIAERFGLDAEELVRASRLVAKVDNAALQDGY-QLYHHAFIVSED 147 (319)
T ss_pred CCEEEecCC-------------chhhhc-CHHHHHHHHHHhCCCHHHHHHHHHHHHhhhhHhhcccc-cceeEEEEEcCC
Confidence 467777777 223333 4467777777777766433333334444 688999 6664 8999999
Q ss_pred CCeEEEcce
Q 004383 724 GRAVSYEQA 732 (757)
Q Consensus 724 GRrf~ie~A 732 (757)
|+=.-|.|+
T Consensus 148 G~W~VIQQG 156 (319)
T PF05559_consen 148 GRWAVIQQG 156 (319)
T ss_pred CCEEEEECC
Confidence 986655554
No 115
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=30.42 E-value=1.6e+02 Score=34.83 Aligned_cols=142 Identities=18% Similarity=0.261 Sum_probs=85.6
Q ss_pred cCCCceeeeeeeeEE-eeChhhhhhhhcCc---chhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEE
Q 004383 113 SRNCSGVAARACGLV-SLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLR 188 (757)
Q Consensus 113 ~~~~~~eAsRa~glV-~m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLR 188 (757)
.+|...++.+++-.| .+.+..+-..|-|+ +.|-.-.-.+.|++.|+. .+|.+ -|.|---==+..||..|+-
T Consensus 423 eng~~~Dplka~hav~gvta~e~chyf~~~~~rndwettle~~~vve~is~---d~~~~--~qthkrvwpasqrd~lf~s 497 (611)
T KOG1739|consen 423 ENGIVLDPLKATHAVKGVTAHEVCHYFWNVDVRNDWETTLENFHVVETISD---DAIII--YQTHKRVWPASQRDVLFLS 497 (611)
T ss_pred cCCcccCccccchhhcchhHHHHHHHHcChhhhcchhhhhhhceeeeeecC---CeEEE--EecccccCCCCcchhHHHH
Confidence 566677777776444 44677777777764 456655455566666664 34443 2222211123468988875
Q ss_pred eeeee----CC--CcEEEEEeecCCCCCCCCCCCCCccce--------ee-ecccceeeeecC--CCceEEEEEEeeeec
Q 004383 189 YSTSL----ED--GSLVVCERSLTSSTGGPTGPPPSSFVR--------AE-MLASGFLIRPCE--GGGSIIHIVDHVDLD 251 (757)
Q Consensus 189 Yckql----~~--G~wvVvDvSld~~~~~~~~~~~~~f~r--------~~-rlPSGcLIq~~~--nG~SkVtwVeH~e~d 251 (757)
.-+.+ ++ ..|+||.+|++... .|.....+| |. .+|-|.+=|++. +=-||||.|-.|.=-
T Consensus 498 hirki~~~~e~gad~wivcn~s~~~a~----~pl~n~cvr~~ltv~micqt~v~~p~~~q~l~rdd~~ckityvs~vnpg 573 (611)
T KOG1739|consen 498 HIRKIPALTENGADTWIVCNFSVDHAS----APLNNRCVRAKLTVAMICQTLVSPPEGNQELSRDDILCKITYVSNVNPG 573 (611)
T ss_pred HHhhcccccCCCCceEEEecCcccccc----CccCCceEEEeeeeeeeeecccCCcccCCcccccceeEEEEEEeeeCCC
Confidence 44443 33 58999999998642 111112333 22 357777778865 558999999988877
Q ss_pred CCcccccchhhh
Q 004383 252 AWSVPEVLRPLY 263 (757)
Q Consensus 252 ~~~V~el~RpL~ 263 (757)
-|.-...+|..|
T Consensus 574 gwapasalravy 585 (611)
T KOG1739|consen 574 GWAPASALRAVY 585 (611)
T ss_pred CcccHHHHHHHH
Confidence 776555555444
No 116
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=25.22 E-value=5.1e+02 Score=23.41 Aligned_cols=104 Identities=9% Similarity=0.090 Sum_probs=56.8
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEE
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 202 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvD 202 (757)
.+-.|...+..|-++|.|.+.|.+-.|.+.-+..++. ++. +. .+-.|....+++ ..|++. .+.+..++-+
T Consensus 4 ~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~--~~~-~~-----~~~~~~g~~~~~-~~~v~~-~~~~~~i~~~ 73 (139)
T cd07817 4 KSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDD--TRS-HW-----KAKGPAGLSVEW-DAEITE-QVPNERIAWR 73 (139)
T ss_pred EEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCC--Cce-EE-----EEecCCCCcEEE-EEEEec-cCCCCEEEEE
Confidence 3445666788999999999998888776655554432 121 11 111122333433 445544 3344433222
Q ss_pred eecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecC
Q 004383 203 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDA 252 (757)
Q Consensus 203 vSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~ 252 (757)
..++ + . .+....+ +++.++|.|+|++--|.+...
T Consensus 74 -~~~~----~-~----~~~~~~~------f~~~~~~~T~vt~~~~~~~~~ 107 (139)
T cd07817 74 -SVEG----A-D----PNAGSVR------FRPAPGRGTRVTLTIEYEPPG 107 (139)
T ss_pred -ECCC----C-C----CcceEEE------EEECCCCCeEEEEEEEEECCc
Confidence 2221 1 0 0111111 577777789999998888664
No 117
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=22.82 E-value=4.3e+02 Score=29.91 Aligned_cols=91 Identities=8% Similarity=0.060 Sum_probs=54.0
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHH---HHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcc
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLV---ALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS 722 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~---el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs 722 (757)
..+++|+..+.+ =..+|.|++|.++|+++-. +..+-+.... .....+.++++.|-... ...+..
T Consensus 229 ~~~~gIi~~D~~----g~I~~~N~~a~~llg~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~--~~~~~~ 295 (542)
T PRK11086 229 SIKEGVIAVDDR----GEVTLINDEAKRLFNYKKGLEDDPLGTDVESW-------MPVSRLKEVLRTGTPRR--DEEINI 295 (542)
T ss_pred HhcCcEEEECCC----CeEEEEhHHHHHHhCCCcCCcccccCCcHHHh-------CCchhHHHHHhcCCCcc--ceEEEE
Confidence 468888876654 5789999999999966521 2222111111 11234566676665432 234445
Q ss_pred CCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 723 MGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 723 ~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.|+.+.+... .+.| +|...|.-.+|.+
T Consensus 296 ~g~~~~~~~~---pi~~-~g~~~g~v~~~rD 322 (542)
T PRK11086 296 NGRLLLTNTV---PVRV-NGEIIGAIATFRD 322 (542)
T ss_pred CCEEEEEEEE---EEeE-CCEEEEEEEEEEE
Confidence 6777766543 3345 7888888777754
No 118
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=20.58 E-value=1.2e+02 Score=33.86 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=22.2
Q ss_pred hhhhhhhhhhhhhcchhhhccccC
Q 004383 10 DRLQKQVSHLVYENGYMRQQLHSA 33 (757)
Q Consensus 10 ~rl~k~~~ql~~en~~~r~~~~~~ 33 (757)
-||+||+++|--|+-+|+.+|..+
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 589999999999999999999864
No 119
>PF08410 DUF1737: Domain of unknown function (DUF1737); InterPro: IPR013619 This domain of unknown function is found at the N terminus of bacterial and viral hypothetical proteins.
Probab=20.17 E-value=2e+02 Score=24.31 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhccccCCCeeEEccCCCeEEEcceEEeEe
Q 004383 697 KILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKV 737 (757)
Q Consensus 697 ~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v 737 (757)
.+.|.-+.+.+.+|+ .+|++..++-.|..+..-||++..|
T Consensus 15 ~~fc~rVt~aL~~GW-~l~GsP~~t~~~~~~~~~QAvvkev 54 (54)
T PF08410_consen 15 SAFCHRVTEALNEGW-QLYGSPTYTFDGGGMICGQAVVKEV 54 (54)
T ss_pred HHHHHHHHHHHHcCC-EecCCceEEECCCcEEEEEEEEecC
Confidence 567777999999999 8999999998888888888887643
Done!