Query 004383
Match_columns 757
No_of_seqs 274 out of 405
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 23:29:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2r55_A STAR-related lipid tran 99.9 3.3E-21 1.1E-25 193.9 22.6 209 59-284 11-229 (231)
2 2pso_A STAR-related lipid tran 99.6 1.2E-14 4.1E-19 148.5 14.1 194 72-284 30-228 (237)
3 1em2_A MLN64 protein; beta bar 99.5 1.4E-13 4.9E-18 138.3 17.5 196 70-284 21-226 (229)
4 3p0l_A Steroidogenic acute reg 99.5 3.1E-13 1E-17 135.4 18.5 195 70-282 10-213 (221)
5 1ln1_A PC-TP, phosphatidylchol 99.2 5.8E-11 2E-15 117.2 14.2 155 114-283 47-209 (214)
6 1jss_A Stard4, cholesterol-reg 99.2 4.8E-10 1.6E-14 112.7 17.1 192 69-282 23-222 (224)
7 3fo5_A Thioesterase, adipose a 99.2 6.8E-11 2.3E-15 122.9 10.8 174 63-259 42-223 (258)
8 3qsz_A STAR-related lipid tran 98.8 9.1E-08 3.1E-12 92.8 15.3 149 118-283 26-179 (189)
9 2e3n_A Lipid-transfer protein 98.8 1.9E-07 6.4E-12 95.3 17.7 196 70-282 22-245 (255)
10 4eet_B Phototropin-2; LOV, blu 97.6 0.00063 2.1E-08 55.9 11.9 106 646-753 5-110 (115)
11 3t50_A Blue-light-activated hi 97.6 0.00055 1.9E-08 58.3 11.7 105 646-753 5-110 (128)
12 3lyx_A Sensory BOX/ggdef domai 97.6 0.0011 3.9E-08 54.0 13.1 112 637-753 5-117 (124)
13 3ue6_A Aureochrome1; PAS/LOV d 97.5 0.001 3.4E-08 59.3 12.5 112 640-753 36-148 (166)
14 1n9l_A PHOT-LOV1, putative blu 97.4 0.0014 4.7E-08 56.3 11.4 104 648-753 3-106 (109)
15 4hia_A LOV protein; PAS, HTH, 97.4 0.0012 4.1E-08 60.3 11.2 112 640-753 8-120 (176)
16 2gj3_A Nitrogen fixation regul 97.4 0.0021 7.3E-08 55.2 12.1 109 638-753 4-115 (120)
17 3p7n_A Sensor histidine kinase 97.3 0.0016 5.3E-08 64.4 11.6 112 639-753 63-176 (258)
18 3sw1_A Sensory box protein; li 97.3 0.0019 6.4E-08 57.5 10.9 114 638-753 24-138 (162)
19 2z6d_A Phototropin-2; PAS-fold 97.3 0.0032 1.1E-07 51.6 11.4 111 641-753 8-119 (130)
20 1byw_A Protein (human ERG pota 97.2 0.0039 1.3E-07 49.6 11.5 93 660-753 12-106 (110)
21 3d72_A Vivid PAS protein VVD; 97.2 0.0027 9.1E-08 56.0 11.2 107 644-752 31-148 (149)
22 3f1p_A Endothelial PAS domain- 97.1 0.0047 1.6E-07 52.4 11.7 101 647-752 8-109 (117)
23 3mqq_A Transcriptional regulat 97.1 0.0018 6.1E-08 55.4 8.5 105 641-752 5-111 (120)
24 3luq_A Sensor protein; PAS, hi 97.0 0.002 6.9E-08 52.9 8.0 109 639-753 3-112 (114)
25 2l0w_A Potassium voltage-gated 96.9 0.012 4E-07 49.1 12.1 113 639-753 20-134 (138)
26 3kx0_X Uncharacterized protein 96.9 0.0024 8.3E-08 59.9 8.2 111 637-753 35-151 (185)
27 3k3c_A Protein RV1364C/MT1410; 96.8 0.0032 1.1E-07 56.2 8.4 110 638-753 16-131 (158)
28 2r78_A Sensor protein; sensory 96.8 0.0037 1.3E-07 54.0 8.3 91 637-732 9-100 (117)
29 1d06_A Nitrogen fixation regul 96.7 0.013 4.4E-07 51.0 11.2 89 641-733 18-111 (130)
30 2v0u_A NPH1-1, LOV2; kinase, t 96.7 0.02 6.7E-07 48.1 11.9 106 646-753 10-115 (146)
31 2pr5_A Blue-light photorecepto 96.6 0.019 6.5E-07 50.0 11.5 101 646-751 7-108 (132)
32 2wkq_A NPH1-1, RAS-related C3 96.5 0.017 5.8E-07 59.1 12.3 107 645-753 18-124 (332)
33 3f1p_B ARYL hydrocarbon recept 96.5 0.01 3.4E-07 50.8 9.0 101 646-752 10-113 (121)
34 2r55_A STAR-related lipid tran 96.4 0.23 7.9E-06 49.3 19.5 150 300-505 21-181 (231)
35 3olo_A Two-component sensor hi 96.4 0.027 9.3E-07 46.6 10.6 82 641-731 15-97 (118)
36 3fc7_A HTR-like protein, senso 96.3 0.018 6.1E-07 48.4 9.0 104 639-753 19-123 (125)
37 3eeh_A Putative light and redo 96.3 0.044 1.5E-06 44.8 11.1 110 638-753 10-123 (125)
38 3ewk_A Sensor protein; PAS dom 96.3 0.057 1.9E-06 52.3 13.6 105 644-753 117-227 (227)
39 2vv6_A FIXL, sensor protein FI 96.2 0.019 6.6E-07 48.9 8.7 83 647-733 2-88 (119)
40 3ewk_A Sensor protein; PAS dom 96.1 0.022 7.5E-07 55.2 9.6 92 660-752 7-98 (227)
41 3b33_A Sensor protein; structu 96.1 0.02 6.9E-07 48.1 8.1 104 641-753 9-113 (115)
42 3mxq_A Sensor protein; PSI2, M 96.0 0.032 1.1E-06 52.8 10.3 108 640-753 23-143 (152)
43 3mjq_A Uncharacterized protein 95.9 0.03 1E-06 46.7 8.7 99 646-752 7-105 (126)
44 2kdk_A ARYL hydrocarbon recept 95.8 0.049 1.7E-06 46.0 9.5 98 646-748 11-110 (121)
45 3nja_A Probable ggdef family p 95.6 0.03 1E-06 46.3 7.5 109 640-753 8-119 (125)
46 3bwl_A Sensor protein; structu 95.5 0.064 2.2E-06 45.6 9.0 85 639-730 17-104 (126)
47 3icy_A Sensor protein; sensory 95.5 0.047 1.6E-06 45.1 8.0 110 638-752 3-115 (118)
48 1v9y_A Heme PAS sensor protein 94.9 0.1 3.4E-06 45.8 8.8 98 641-744 42-144 (167)
49 3mfx_A Sensory BOX/ggdef famil 94.9 0.061 2.1E-06 48.8 7.5 87 641-731 9-103 (129)
50 2d4r_A Hypothetical protein TT 94.8 0.6 2.1E-05 40.9 13.6 140 123-285 6-146 (147)
51 3h9w_A Diguanylate cyclase wit 94.6 0.16 5.6E-06 42.6 9.0 99 649-752 4-104 (115)
52 1ll8_A PAS kinase; PAS domain, 94.5 0.02 6.8E-07 48.5 3.0 82 647-731 7-92 (114)
53 2pso_A STAR-related lipid tran 94.5 1.4 4.9E-05 44.5 17.2 56 322-395 48-104 (237)
54 3a0s_A Sensor protein; PAS-fol 94.4 0.51 1.8E-05 36.2 11.0 92 648-752 2-95 (96)
55 1jss_A Stard4, cholesterol-reg 94.3 1.4 4.9E-05 43.7 16.5 55 323-395 42-98 (224)
56 3p0l_A Steroidogenic acute reg 94.1 2.3 7.7E-05 42.0 17.4 72 304-395 13-87 (221)
57 3fo5_A Thioesterase, adipose a 94.1 0.73 2.5E-05 47.7 14.3 150 296-505 43-201 (258)
58 4hi4_A Aerotaxis transducer AE 93.8 0.53 1.8E-05 40.6 10.8 98 641-753 7-117 (121)
59 3qsz_A STAR-related lipid tran 93.3 3.1 0.00011 39.6 16.3 54 324-395 3-58 (189)
60 3fg8_A Uncharacterized protein 91.4 0.25 8.7E-06 42.4 5.4 62 646-711 20-81 (118)
61 1ln1_A PC-TP, phosphatidylchol 91.4 1.4 4.9E-05 42.7 11.4 57 322-395 26-84 (214)
62 1em2_A MLN64 protein; beta bar 90.7 11 0.00037 37.2 17.2 55 323-395 41-98 (229)
63 4f3l_A Mclock, circadian locom 90.4 1.1 3.9E-05 47.5 10.4 91 660-751 259-350 (361)
64 3vol_A Aerotaxis transducer AE 87.8 2.5 8.7E-05 41.7 10.2 114 623-753 8-134 (233)
65 3p9v_A Uncharacterized protein 87.6 15 0.0005 34.4 14.9 143 122-285 10-153 (161)
66 2w0n_A Sensor protein DCUS; si 87.5 0.85 2.9E-05 37.2 5.5 98 639-753 15-116 (118)
67 3tfz_A Cyclase; helix-GRIP, BE 87.4 9.1 0.00031 36.1 13.4 145 122-287 8-163 (172)
68 2vlg_A Sporulation kinase A; h 86.6 1.7 6E-05 38.2 7.4 78 646-731 7-85 (111)
69 4eho_A Bacteriophytochrome, PA 84.7 1.6 5.5E-05 50.2 7.8 105 643-753 523-627 (635)
70 2jhe_A Transcription regulator 82.3 1.6 5.5E-05 40.4 5.4 89 640-743 81-170 (190)
71 1t17_A Conserved hypothetical 82.2 9.8 0.00034 34.5 10.7 138 122-284 5-145 (148)
72 3mr0_A Sensory box histidine k 80.4 8.9 0.0003 33.5 9.4 106 641-752 11-120 (142)
73 3tl1_A WHIE ORF VI, polyketide 79.0 40 0.0014 31.8 14.0 112 122-253 6-117 (159)
74 3rty_A Period circadian protei 76.3 12 0.00039 40.0 10.4 81 660-742 162-248 (339)
75 3a0r_A Sensor protein; four he 75.3 5.7 0.0002 40.2 7.4 95 646-753 16-112 (349)
76 3tvq_A Multifunctional cyclase 72.8 67 0.0023 30.6 14.0 144 122-287 6-150 (169)
77 2qkp_A Uncharacterized protein 66.1 21 0.00072 33.1 8.5 105 639-753 19-129 (151)
78 1gu4_A CAAT/enhancer binding p 65.8 1.8 6.1E-05 37.5 0.9 29 4-32 47-75 (78)
79 2e3n_A Lipid-transfer protein 65.6 6.6 0.00023 39.5 5.3 58 322-395 45-105 (255)
80 4f3l_B BMAL1B; BHLH, PAS, circ 63.2 26 0.00089 37.5 9.7 90 660-751 286-378 (387)
81 3cax_A Uncharacterized protein 62.9 29 0.00098 37.0 9.9 104 639-753 239-343 (369)
82 1hjb_A Ccaat/enhancer binding 61.3 2.1 7.2E-05 37.8 0.6 29 4-32 47-75 (87)
83 1jnm_A Proto-oncogene C-JUN; B 57.3 2.8 9.7E-05 34.3 0.7 27 5-31 34-60 (62)
84 1t2k_D Cyclic-AMP-dependent tr 55.0 3.2 0.00011 33.8 0.6 27 4-30 33-59 (61)
85 2oa5_A Hypothetical protein BQ 54.5 4 0.00014 37.5 1.2 24 10-33 11-34 (110)
86 1nwz_A PYP, photoactive yellow 50.1 46 0.0016 30.8 7.7 95 646-747 25-120 (125)
87 1mzu_A PPR; photoactive yellow 44.7 26 0.00089 32.7 5.1 95 646-747 30-125 (129)
88 1deb_A APC protein, adenomatou 42.4 6.4 0.00022 31.5 0.5 23 9-31 5-27 (54)
89 4f3l_A Mclock, circadian locom 41.3 45 0.0015 35.2 7.0 65 637-705 84-149 (361)
90 1ci6_A Transcription factor AT 41.1 7 0.00024 32.2 0.6 27 4-30 34-60 (63)
91 3gdi_A Period circadian protei 41.1 33 0.0011 36.0 5.9 77 660-738 173-251 (309)
92 4dj2_A Period circadian protei 38.9 1.4E+02 0.0046 31.5 10.2 85 660-746 184-272 (320)
93 4dj3_A Period circadian protei 37.2 1E+02 0.0034 32.5 8.9 79 660-740 182-264 (317)
94 3f08_A Uncharacterized protein 32.8 1.4E+02 0.0047 27.4 8.1 41 123-166 6-46 (146)
95 2pcs_A Conserved protein; stru 32.8 2.7E+02 0.0093 24.9 15.0 118 124-263 8-127 (162)
96 2wt7_A Proto-oncogene protein 30.3 13 0.00046 30.4 0.6 26 5-30 35-60 (63)
97 3p51_A Uncharacterized protein 27.2 3.2E+02 0.011 25.5 9.7 44 123-168 6-54 (160)
98 3n7n_E Monopolin complex subun 27.1 13 0.00045 33.1 0.0 31 2-32 38-68 (95)
99 1dip_A Delta-sleep-inducing pe 25.2 66 0.0023 27.6 3.9 27 5-31 20-46 (78)
100 2yy0_A C-MYC-binding protein; 23.7 22 0.00076 28.4 0.7 28 5-32 24-51 (53)
101 1nkp_B MAX protein, MYC proto- 23.4 20 0.00068 30.6 0.4 30 4-33 51-80 (83)
102 2le1_A Uncharacterized protein 23.0 3.9E+02 0.013 23.7 9.2 37 123-159 6-42 (151)
103 4f3l_B BMAL1B; BHLH, PAS, circ 22.8 1.5E+02 0.0051 31.6 7.2 66 637-704 84-149 (387)
104 2j5u_A MREC protein; bacterial 22.6 25 0.00085 36.1 1.0 27 5-31 24-60 (255)
105 2jn6_A Protein CGL2762, transp 21.3 29 0.00099 29.5 1.0 23 6-28 65-87 (97)
No 1
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=99.88 E-value=3.3e-21 Score=193.88 Aligned_cols=209 Identities=18% Similarity=0.226 Sum_probs=164.2
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhh
Q 004383 59 PQHPQRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEI 137 (757)
Q Consensus 59 ~~~~~~d~~~~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~ 137 (757)
|-|+..+...++.++++|+++|+||+++++.+ ..|..... + +-+-++.. ..+..+.+-|+.|+|...+.+|++.
T Consensus 11 ~~~~~~~~~~~~~y~~~a~~~~~~~l~~~~~~-~~W~~~~~-~---~gv~v~~~~~~~~~~~~~k~~~~v~~~~~~v~~~ 85 (231)
T 2r55_A 11 VDLGTENLYFQSMAAQMSEAVAEKMLQYRRDT-AGWKICRE-G---NGVSVSWRPSVEFPGNLYRGEGIVYGTLEEVWDC 85 (231)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHCC-SSCEEEEC-C---SSEEEEEEECSSSSSEEEEEEEEESSCHHHHHHH
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHhcCC-CCCEEEEe-C---CCEEEEEEccCCCCCcEEEEEEEECCCHHHHHHH
Confidence 33444455558999999999999999999765 68998632 1 11222221 2345678899999999999999999
Q ss_pred hcC-----cchhhhhCccceeeeeeccCCCCeeeeeee-hhcccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCC
Q 004383 138 LKD-----CPSWFRDCRCLDVLSVIPTGNGGTIELIYM-QTYAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGG 211 (757)
Q Consensus 138 lmD-----~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~-e~~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~ 211 (757)
||+ +.+|-..|...++|+.++. .-.++|. ....+++++++|||.++||+++.++|.|+|+.+|++.
T Consensus 86 l~~~d~~~r~~Wd~~~~~~~vle~i~~----~~~i~~~~~~~~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~---- 157 (231)
T 2r55_A 86 VKPAVGGLRVKWDENVTGFEIIQSITD----TLCVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEH---- 157 (231)
T ss_dssp HCC--CCSHHHHCTTCSEEEEEEECSS----SEEEEEEECCCBTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCC----
T ss_pred HHhhCcchhhhhccccceeEEEEEcCC----CEEEEEEEeccccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccC----
Confidence 977 8999999999999999863 2344442 2234457999999999999999999999999999984
Q ss_pred CCCCCCCccceeeecccceeeeecC--CCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 004383 212 PTGPPPSSFVRAEMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 284 (757)
Q Consensus 212 ~~~~~~~~f~r~~rlPSGcLIq~~~--nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~erl 284 (757)
|..|+...|+|++.++|||+|||++ +|.|+|||+.|+|...| +| +.++++.+..+...|++.|| +|+..
T Consensus 158 ~~~P~~~~~VR~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 158 PLCPPKPGFVRGFNHPCGCFCEPLPGEPTKTNLVTFFHTDLSGY-LP---QNVVDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp TTSCCCTTCEEEEECSEEEEEEECC--CCCEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCEEEEEEeeEEEEEEeCCCCCcEEEEEEEEeCCCCC-cc---HHHHHHHHhHhHHHHHHHHHHHHHHh
Confidence 4456667899999999999999998 78999999999999876 66 68888999999999999996 88764
No 2
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=99.58 E-value=1.2e-14 Score=148.47 Aligned_cols=194 Identities=19% Similarity=0.249 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceee--ecCCCceeeeeeeeEEeeChhhhh-hhhcCcchhhhhC
Q 004383 72 LLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVA--VSRNCSGVAARACGLVSLDPTKIA-EILKDCPSWFRDC 148 (757)
Q Consensus 72 ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~--~~~~~~~eAsRa~glV~m~~~~LV-e~lmD~~~W~~~f 148 (757)
.-+++++++.|+++.+....-.|-.... + +-+-+.. .+.|...-.=|..++|...+.+++ ++|.|+.+|-..|
T Consensus 30 y~~~l~~~~~~ll~~~~~~~~gW~~~~~-~---~gi~V~~k~~~~~~~~~~~K~~~~v~~~~~~v~~~ll~dr~~Wd~~~ 105 (237)
T 2pso_A 30 FHTYLNHLIQGLQKEAKEKFKGWVTCSS-T---DNTDLAFKKVGDGNPLKLWKASVEVEAPPSVVLNRVLRERHLWDEDF 105 (237)
T ss_dssp --CCCCCHHHHHHHHHHHHCCSCEEECC-S---SSCEEEEECCCSSCCCCEEEEEEEESSCHHHHHHHHHHCGGGTCTTB
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCEEEec-C---CCeEEEEEEcCCCCCcEEEEEEEEEcCChHHHHHHHHhhhhhHHhhh
Confidence 3445678888888777655567987632 1 1122222 124555556788999988787764 7999999999999
Q ss_pred ccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeee-eCCCcEEEEEeecCCCCCCCCCCCCCccceeeecc
Q 004383 149 RCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTS-LEDGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLA 227 (757)
Q Consensus 149 ~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckq-l~~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlP 227 (757)
..+++|+.+.. .-.++|..+..|.| +++|||.++||.++ +++|.++||-.|++. |..|+. .|+|++.++
T Consensus 106 ~~~~vle~id~----~~~I~y~~~~~p~p-~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h----~~~P~~-g~VR~~~~~ 175 (237)
T 2pso_A 106 VQWKVVETLDR----QTEIYQYVLNSMAP-HPSRDFVVLRTWKTDLPKGMCTLVSLSVEH----EEAQLL-GGVRAVVMD 175 (237)
T ss_dssp CCCEEEEEEET----TEEEEEEEECCSSS-CCCEEEEEEEEEESCCGGGCEEEEEEECCC----TTCCCC-SSEECCEEE
T ss_pred ceEEEEEEcCC----CcEEEEEEecCCCC-cCCeEEEEEEEEEEECCCCEEEEEEEcccC----CCCCCC-CcEEEEEec
Confidence 99999999874 24678887776665 79999999999985 789999999999985 334555 899999999
Q ss_pred cceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 004383 228 SGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 284 (757)
Q Consensus 228 SGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~erl 284 (757)
+|++|+|+++|.|+|||+.|+|.. ..+|.-+..++.... -..+..|| +++.+
T Consensus 176 ~g~~i~P~~~~~t~vt~~~~~Dp~-G~iP~~ln~~~~~~~----~~~l~~LR~~~~~~ 228 (237)
T 2pso_A 176 SQYLIEPCGSGKSRLTHICRIDLK-GHSPEWYSKGFGHLC----AAEVARIRNSFQPL 228 (237)
T ss_dssp EEEEEEECSTTCEEEEEEEEECCS-SSCTTTTTTHHHHHH----HHHHHHHHHTTSCC
T ss_pred cEEEEEECCCCCEEEEEEEEeCCC-CCchHHHHHHHHHHH----HHHHHHHHHHHHhh
Confidence 999999999999999999999988 468866544443322 23556665 44443
No 3
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=99.54 E-value=1.4e-13 Score=138.28 Aligned_cols=196 Identities=14% Similarity=0.154 Sum_probs=148.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhh-hhhcC---cchh
Q 004383 70 AGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIA-EILKD---CPSW 144 (757)
Q Consensus 70 ~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LV-e~lmD---~~~W 144 (757)
...++++++|+++++++.... -.|-.....+.| +-++.. .++ .+-.-|..++|...+..|. ++|.| +.+|
T Consensus 21 ~~y~~~~~~a~~~~~~~l~~~-~~W~~~~~~~~g---~~vy~~~~~~-~g~~~k~~~~v~~~~~~v~~~~~~d~~~r~~W 95 (229)
T 1em2_A 21 REYIRQGKEATAVVDQILAQE-ENWKFEKNNEYG---DTVYTIEVPF-HGKTFILKTFLPCPAELVYQEVILQPERMVLW 95 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHTTG-GGCEEEEECTTC---CEEEEEEETT-TEEEEEEEEEESSCHHHHHHHTTTCHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhhCC-CCCEEEEecCCC---CEEEEEecCC-CCceEEEEEEecCCHHHHHHHHHhCccchhhc
Confidence 567899999999999999643 469775222112 111111 111 1224599999999999998 66644 6789
Q ss_pred hhhCccceeeeeeccCCCCeeeeeeehhccc--ccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCccce
Q 004383 145 FRDCRCLDVLSVIPTGNGGTIELIYMQTYAP--TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVR 222 (757)
Q Consensus 145 ~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~--SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r 222 (757)
-..|...++|+.+..+ + .+ |-++..| .++++.|||.++|+++.. ++.++||-.|++. +..|+...|+|
T Consensus 96 d~~~~~~~vle~~~~~---t-~I-~~~~~~p~~~~~~~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~~~VR 165 (229)
T 1em2_A 96 NKTVTACQILQRVEDN---T-LI-SYDVSAGAAGGVVSPRDFVNVRRIERR-RDRYLSSGIATSH----SAKPPTHKYVR 165 (229)
T ss_dssp CTTEEEEEEEEEETTT---E-EE-EEEEECCBTTTTBCCEEEEEEEEEEEC-SSEEEEEEEECCC----TTSCCCTTSEE
T ss_pred ccccceEEEEEecCCC---e-EE-EEEEecCcCCCCcCCCeeEEEEEEEEc-CCEEEEEEecccC----CCCCCCCCCEe
Confidence 9999999999998743 3 33 4456655 678999999999999998 5569999999974 44566778999
Q ss_pred eeecccceeeeecC--CCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHhhh
Q 004383 223 AEMLASGFLIRPCE--GGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIRQI 284 (757)
Q Consensus 223 ~~rlPSGcLIq~~~--nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~erl 284 (757)
++.+++|++|+|++ +|.|+|||+-|+|..-| +| +.++++.+.-+.-.++..|| +|+.+
T Consensus 166 ~~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~l~n~~~~~~~~~~~~~Lr~~~~~~ 226 (229)
T 1em2_A 166 GENGPGGMIVLKSASNPRVCTFVWILNTDLKGR-LP---RYLIHQSLAATMFEFAFHLRQRISEL 226 (229)
T ss_dssp CEECSEEEEEEECSSCTTCEEEEEEECEECCSS-SC---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeecccEEEEEecCCCCCcEEEEEEEEECCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998 67899999999998876 66 67787777777777888886 77654
No 4
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=99.52 E-value=3.1e-13 Score=135.35 Aligned_cols=195 Identities=18% Similarity=0.251 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeeec-CCCceeeeeeeeEEeeChhhhhhhhc-C---cchh
Q 004383 70 AGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVS-RNCSGVAARACGLVSLDPTKIAEILK-D---CPSW 144 (757)
Q Consensus 70 ~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~~-~~~~~eAsRa~glV~m~~~~LVe~lm-D---~~~W 144 (757)
..-.++|++||++++++... +..|.....-+.|-. +.... ++. +-.-|..++|...+.+|.+.|+ | +.+|
T Consensus 10 ~~y~~~~~~~~~~~l~~~~~-~~gW~~~~~~~~gv~---vy~~~~~~~-g~~~k~~~~v~~~~~~v~~~l~~d~~~r~~W 84 (221)
T 3p0l_A 10 LAYLQQGEEAMQKALGILSN-QEGWKKESQQDNGDK---VMSKVVPDV-GKVFRLEVVVDQPMERLYEELVERMEAMGEW 84 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CTTCEEEEECTTSCE---EEEEECSSS-CEEEEEEEEESSCHHHHHHHHTTTGGGTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhC-CCCCeEeeecCCCcE---EEEEEcCCC-ceEEEEEEEEcCCHHHHHHHHHhccchhhhc
Confidence 34578999999999999864 457988621111211 11111 222 4566999999999999999984 5 6789
Q ss_pred hhhCccceeeeeeccCCCCeeeeeeehh-cccccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCcccee
Q 004383 145 FRDCRCLDVLSVIPTGNGGTIELIYMQT-YAPTTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 223 (757)
Q Consensus 145 ~~~f~~i~vl~~~~~g~~G~lqLm~~e~-~v~SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~ 223 (757)
-..|...++|+.+..+ + .+.|... ..+.+++++|||.++||.++. +|.++|+-.|++. +..|+...|+|+
T Consensus 85 d~~~~~~~vle~~~~~---t-~I~y~~~~~~~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~----~~~P~~~g~VR~ 155 (221)
T 3p0l_A 85 NPNVKEIKVLQKIGKD---T-FITHELAAEAAGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDF----GNMPEQKGVIRA 155 (221)
T ss_dssp CTTCSEEEEEEECSSS---E-EEEEEEECC---CCSCCEEEEEEEEEEEC-SSCEEECCEECCC----TTSCCCTTSEEC
T ss_pred CcchheEEEEEecCCC---e-EEEEEeeccccCCccCCceEEEEEEEEEc-CCeEEEEEEeccC----CCCCCCCCeEEE
Confidence 9999999999988753 3 5666543 234568999999999999985 6889999999873 445566789999
Q ss_pred eecccceeeeecCCC--ceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHh
Q 004383 224 EMLASGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 282 (757)
Q Consensus 224 ~rlPSGcLIq~~~nG--~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~e 282 (757)
+.+++|++|+|+++| .|+|||+-|+|..-| +| +.+++..+.-+.-.++..|| +|+
T Consensus 156 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 213 (221)
T 3p0l_A 156 EHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGW-LP---KSIINQVLSQTQVDFANHLRKRLE 213 (221)
T ss_dssp EECSCEEEEEEETTEEEEEEEEEEECEECCSS-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred eccceEEEEEECCCCCCcEEEEEEEEecCCCC-CC---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988 999999999998877 55 45666666667777888886 666
No 5
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=99.25 E-value=5.8e-11 Score=117.21 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=120.3
Q ss_pred CCCceeeeeeeeEEe-eChhhhhhhhcC---cchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEe
Q 004383 114 RNCSGVAARACGLVS-LDPTKIAEILKD---CPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRY 189 (757)
Q Consensus 114 ~~~~~eAsRa~glV~-m~~~~LVe~lmD---~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRY 189 (757)
++...-.-|..++|. ..+.++.+.|+| +++|...|...++++. +|. .++|.++..|.|+ ..|||.++|+
T Consensus 47 ~~~~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~~~~~~vle~-----~~~-~i~~~~~~~p~p~-~~RD~v~~~~ 119 (214)
T 1ln1_A 47 KKTGLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQYVKELYEQEC-----NGE-TVVYWEVKYPFPM-SNRDYVYLRQ 119 (214)
T ss_dssp TTTTEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTTEEEEEEEEE-----TTE-EEEEEEECCCTTS-CCEEEEEEEE
T ss_pred CCCCcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHHHhhEEEecc-----CCC-EEEEEEEEcCCCC-CCceEEEEEE
Confidence 344445669999995 999999999999 7889999988888764 233 4789999999886 8999999999
Q ss_pred eeeeC-CC--cEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchh
Q 004383 190 STSLE-DG--SLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESS 266 (757)
Q Consensus 190 ckql~-~G--~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg 266 (757)
++.++ +| .|+|+-.|++. |..|+...++|++.+++|++|++.++|.|+||++-|+|.. ..+|.-+. +..
T Consensus 120 ~~~~~~~g~~~~~i~~~Sv~~----p~~P~~~~~VR~~~~~~~~~i~p~~~~~t~v~~~~~~Dp~-G~iP~~l~---n~~ 191 (214)
T 1ln1_A 120 RRDLDMEGRKIHVILARSTSM----PQLGERSGVIRVKQYKQSLAIESDGKKGSKVFMYYFDNPG-GQIPSWLI---NWA 191 (214)
T ss_dssp EEEECSTTCCEEEEEEEECCB----TTBCCCTTSEEECCEEEEEEEEECSSSSEEEEEEEEECCS-SCCCHHHH---HHH
T ss_pred EEecccCCCeEEEEEEecccC----CCCCCCCCcEEEEEEEEEEEEecCCCCceEEEEEEEECCC-CcccHHHH---HHH
Confidence 99875 66 49999999974 3455567899999999999999999999999999999988 56774433 222
Q ss_pred HHHHHHHHHHHHH-HHhh
Q 004383 267 KILAQKMTMAAMR-HIRQ 283 (757)
Q Consensus 267 ~afgarrw~aaLr-~~er 283 (757)
..-+.-.++..|| +|+.
T Consensus 192 ~~~~~~~~l~~l~k~~~~ 209 (214)
T 1ln1_A 192 AKNGVPNFLKDMARACQN 209 (214)
T ss_dssp HHTHHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 2224445555664 5543
No 6
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=99.18 E-value=4.8e-10 Score=112.70 Aligned_cols=192 Identities=19% Similarity=0.297 Sum_probs=141.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhhhcCcc---hh
Q 004383 69 PAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDCP---SW 144 (757)
Q Consensus 69 ~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~lmD~~---~W 144 (757)
...+.+.++++|.++..+. +..|-..... +-+-+... ..+..+-.-|..++|...+.+|.+.|+|.. +|
T Consensus 23 ~~~~~~~~~e~l~~~~~~~---~~~W~~~~~~----~gv~vy~~~~~~~~~~~~k~~~~v~~~~~~v~~~l~d~~~r~~W 95 (224)
T 1jss_A 23 VASISTKLQNTLIQYHSIE---EDEWRVAKKA----KDVTVWRKPSEEFNGYLYKAQGVMDDVVNNVIDHIRPGPWRLDW 95 (224)
T ss_dssp -CTHHHHHHHHHHHHTTSC---GGGCEEEEEE----TTEEEEEEECSSSSSEEEEEEEEESSCHHHHHHHHSSSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhC---CCCCEEEEEC----CCEEEEEEeccCCCceEEEEEEEEeCCHHHHHHHHhCccccccc
Confidence 3457777777777766643 5569765211 11222222 234444566999999999999999999955 89
Q ss_pred hhhCccceeeeeeccCCCCeeeeeeehhccc-ccccccceeEEEEeeeeeCCCcEEEEEeecCCCCCCCCCCCCCcccee
Q 004383 145 FRDCRCLDVLSVIPTGNGGTIELIYMQTYAP-TTLAAARDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTGPPPSSFVRA 223 (757)
Q Consensus 145 ~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~-SpLvp~Re~~fLRYckql~~G~wvVvDvSld~~~~~~~~~~~~~f~r~ 223 (757)
-..|...++|+.+... -.+.|..+..+ -|++..|||.++|+.+..++| ++|+-+|++.. ..+ +.|+|+
T Consensus 96 d~~~~~~~vle~id~~----~~I~y~~~~~~~~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp----~~~--~g~VR~ 164 (224)
T 1jss_A 96 DRLMTSLDVLEHFEEN----CCVMRYTTAGQLLNIISPREFVDFSYTVGYEEG-LLSCGVSVEWS----ETR--PEFVRG 164 (224)
T ss_dssp CSSEEEEEEEEECSTT----EEEEEEEECCBTTTTBCCEEEEEEEEEEEETTE-EEEEEEECCCC----CCC--TTSEEC
T ss_pred ccceeeEEEEEEcCCC----eEEEEEEcccccCCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecC----CCC--CCCEEE
Confidence 9888888999887532 35666666543 457999999999999999887 78899998742 222 479999
Q ss_pred eecccceeeeecCCC--ceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HHh
Q 004383 224 EMLASGFLIRPCEGG--GSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HIR 282 (757)
Q Consensus 224 ~rlPSGcLIq~~~nG--~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~e 282 (757)
+.+++|++|+|+++| .|+|||+-|+|..-| +| +.+++..+.-+...++..|| +|+
T Consensus 165 ~~~~~g~~i~p~~~~~~~t~vt~~~~~Dp~G~-iP---~~lvn~~~~~~~~~~~~~Lr~~~~ 222 (224)
T 1jss_A 165 YNHPCGWFCVPLKDSPSQSLLTGYIQTDLRGM-IP---QSAVDTAMASTLANFYSDLRKGLR 222 (224)
T ss_dssp EECSEEEEEEEETTEEEEEEEEEEECEECCSC-CC---HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EecccEEEEEEcCCCCCceEEEEEEEeCCCCC-cc---HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999999999875 899999999998765 45 46777666667778888886 554
No 7
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=99.17 E-value=6.8e-11 Score=122.92 Aligned_cols=174 Identities=20% Similarity=0.296 Sum_probs=128.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHhhcCCCcceeecCCCCCCCCccceeee-cCCCceeeeeeeeEEeeChhhhhhhhcCc
Q 004383 63 QRDASNPAGLLAVAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAV-SRNCSGVAARACGLVSLDPTKIAEILKDC 141 (757)
Q Consensus 63 ~~d~~~~~~ll~iAe~am~Efl~~At~~~plWv~~pg~k~gpdsig~~~~-~~~~~~eAsRa~glV~m~~~~LVe~lmD~ 141 (757)
+.|-+|+..|..==.+||..+.. .-.|.-... + +-+-++.. .+++ -.=|..++|...+..|.+.|+|.
T Consensus 42 ~w~~~~~~~l~~~n~~al~~l~~-----~~gW~~~~~-~---~gv~Vy~~~~~~~--l~~k~~~~v~~~~~~v~~~L~D~ 110 (258)
T 3fo5_A 42 PWDPSNQVYLSYNNVSSLKMLVA-----KDNWVLSSE-I---SQVRLYTLEDDKF--LSFHMEMVVHVDAAQAFLLLSDL 110 (258)
T ss_dssp ECCGGGHHHHHHHHHHHHHHHHT-----CSCCEEEEE-E---TTEEEEEEECSSC--EEEEEEEEESSCHHHHHHHHHCG
T ss_pred ccCcccceecccCCHHHHHhhhc-----cCCCEEEec-C---CCeEEEEEECCCc--eEEEEEEEEeCCHHHHHHHHhCc
Confidence 37888777777666666666653 345765421 1 11112211 1222 23388899999999999999876
Q ss_pred ---chhhhhCccceeeeeeccCCCCeeeeeeehhccccc--ccccceeEEEEeeeee-CCCc-EEEEEeecCCCCCCCCC
Q 004383 142 ---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTT--LAAARDFWLLRYSTSL-EDGS-LVVCERSLTSSTGGPTG 214 (757)
Q Consensus 142 ---~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~Sp--Lvp~Re~~fLRYckql-~~G~-wvVvDvSld~~~~~~~~ 214 (757)
++|-..+...++|+.+... .++| ++..|+| ++++|||..|||.+.. .+|. ++|+-+|++. +..
T Consensus 111 ~~R~~WD~~~~~~~vle~id~~-----~ivY-~~~~p~~~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~h----p~~ 180 (258)
T 3fo5_A 111 RQRPEWDKHYRSVELVQQVDED-----DAIY-HVTSPALGGHTKPQDFVILASRRKPCDNGDPYVIALRSVTL----PTH 180 (258)
T ss_dssp GGGGGTCTTCCEEEEEEEEETT-----EEEE-EEEECCCTTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEEC----TTS
T ss_pred hhHhHhhhhccEEEEEEEcCCC-----eEEE-EEecCCccCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccC----CCC
Confidence 5688899999999888743 4577 6778885 7999999999999874 4775 9999999984 446
Q ss_pred CCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccc
Q 004383 215 PPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVL 259 (757)
Q Consensus 215 ~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~ 259 (757)
|+...|+|++.+|+||+|+|+++|.|+|+++-|++- ..+|-+-
T Consensus 181 Pp~~g~VR~~~~~sg~~I~P~~~~~t~VtY~~q~dp--G~lP~~~ 223 (258)
T 3fo5_A 181 RETPEYRRGETLCSGFCLWREGDQLTKVSYYNQATP--GVLNYVT 223 (258)
T ss_dssp CCCTTSEECCCSSEEEEEEEEETTEEEEEEEESCCG--GGHHHHH
T ss_pred CCCCCCEEEEEcCcEEEEEECCCCCEEEEEEEeeCC--CCCCceE
Confidence 677899999999999999999999999999988873 4455433
No 8
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=98.79 E-value=9.1e-08 Score=92.83 Aligned_cols=149 Identities=19% Similarity=0.232 Sum_probs=107.8
Q ss_pred eeeeeeeeEEeeChhhhhhhhcCc---chhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeC
Q 004383 118 GVAARACGLVSLDPTKIAEILKDC---PSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLE 194 (757)
Q Consensus 118 ~eAsRa~glV~m~~~~LVe~lmD~---~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~ 194 (757)
.-.=|..++|...+.++.+.|+|. ++|...|...++|+. .++ -.++|.++-.|-| +..|||.++|+.+..+
T Consensus 26 ~~~~k~~~~v~~s~~~v~~~l~D~~~~~~W~~~~~~~~vle~----~~~-~~i~y~~~~~p~p-~~~RD~v~~~~~~~~~ 99 (189)
T 3qsz_A 26 LREFRGEVRLKAAADDVVKVLRDANAFRQWMPDVAASELLKA----TDT-EQYHYLDNSAPWP-VSNRDGVYHFTYEKAG 99 (189)
T ss_dssp SCEEEEEEEESSCHHHHHHHHHCGGGGGGTSTTEEEEEEEEE----CSS-EEEEEEEECCSSS-CCCEEEEEEEEEEECT
T ss_pred eEEEEEEEEEECCHHHHHHHHHhHHHhhhHHHhcCEEEEEee----cCC-ceEEEEEeecCCC-cCCcceEEEEEEEECC
Confidence 345688999999999999999994 557767767777776 233 4567888877765 7899999999999988
Q ss_pred CCcEEEEEeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccc-cchhhhchhHHHHHHH
Q 004383 195 DGSLVVCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE-VLRPLYESSKILAQKM 273 (757)
Q Consensus 195 ~G~wvVvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~e-l~RpL~~Sg~afgarr 273 (757)
+|...|+=.+ . .+..|+...++|++.+++|++|+| ++|.|+|+++-|+|..- .+|. +.+..... +.-.
T Consensus 100 ~g~~~i~~~~-~----~~~~P~~~~~VR~~~~~~~~~i~p-~~~~t~vt~~~~~dp~G-~iP~~lvn~~~~~----~~~~ 168 (189)
T 3qsz_A 100 DGAITVRVEA-V----PDYLPLRKGKVRIPRAKGQWTLVP-DADGVDVTYQMHASPGG-SIPSWLANQTVVE----TPFG 168 (189)
T ss_dssp TSCEEEEEEE-C----TTSSCCCTTSEECCCEEEEEEEEE-CSSSEEEEEEEEECSCS-SSCHHHHHHTTTH----HHHH
T ss_pred CCeEEEEEEc-C----CCccCCCCCeEEeeEeeEEEEEEE-CCCeEEEEEEEEeCCCC-CCCHHHHHHHHHH----HHHH
Confidence 8876655333 2 234555678999999999999999 99999999999998774 4554 33333322 2334
Q ss_pred HHHHHH-HHhh
Q 004383 274 TMAAMR-HIRQ 283 (757)
Q Consensus 274 w~aaLr-~~er 283 (757)
++..|| +|+.
T Consensus 169 ~l~~L~k~~~~ 179 (189)
T 3qsz_A 169 TLKALRSHLRQ 179 (189)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhhh
Confidence 555564 4443
No 9
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=98.77 E-value=1.9e-07 Score=95.33 Aligned_cols=196 Identities=14% Similarity=0.217 Sum_probs=130.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCC---CcceeecCCCCCCCCccceeeec---CCCceeeeeeeeEEe-eChhhhhhhhcC--
Q 004383 70 AGLLAVAEETLAEFLSKATGT---AVDWVQMIGMKPGPDSIGIVAVS---RNCSGVAARACGLVS-LDPTKIAEILKD-- 140 (757)
Q Consensus 70 ~~ll~iAe~am~Efl~~At~~---~plWv~~pg~k~gpdsig~~~~~---~~~~~eAsRa~glV~-m~~~~LVe~lmD-- 140 (757)
..+.+.++..+.|.+..|... ...|-..-. +.| +-++... .|...-.=|+.+.|. ..+..+.+.|+|
T Consensus 22 ~~~~~~~~~~~~e~l~~~~~~~~~~~~W~~~~~-~~g---v~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~ 97 (255)
T 2e3n_A 22 HRFVQKVEEMVQNHMTYSLQDVGGDANWQLVVE-EGE---MKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVD 97 (255)
T ss_dssp CTTHHHHHHHHHHHHHHTTSCCTTCTTEEEEEE-ETT---EEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCcEEEEe-CCC---EEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcc
Confidence 356666666666766666543 356877521 111 1111100 111101246666665 788999999999
Q ss_pred -cchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeee----CC--CcEEEEEeecCCCCCCCC
Q 004383 141 -CPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSL----ED--GSLVVCERSLTSSTGGPT 213 (757)
Q Consensus 141 -~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql----~~--G~wvVvDvSld~~~~~~~ 213 (757)
+++|...+...++|+.+..+ + .++|..+..|.|+ ..|||.++|++++. ++ +.|+|+..|++. +.
T Consensus 98 ~r~~Wd~~~~~~~vle~i~~~---~-~i~y~~~~~p~p~-s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~----~~ 168 (255)
T 2e3n_A 98 VRNDWETTIENFHVVETLADN---A-IIIYQTHKRVWPA-SQRDVLYLSVIRKIPALTENDPETWIVCNFSVDH----DS 168 (255)
T ss_dssp GHHHHCCSEEEEEEEEEEETT---E-EEEEEEECCCTTS-CCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCC----TT
T ss_pred hHhhhhhhcceeEEEEEcCCC---C-EEEEEEeecCCCc-CCceeEEEEEEEeccccccCCCCEEEEEEeccCC----CC
Confidence 66799888888999887642 2 7888888888886 88999999999988 33 599999999985 33
Q ss_pred CCCCCccceeee---cccceeeeecCC--------CceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HH
Q 004383 214 GPPPSSFVRAEM---LASGFLIRPCEG--------GGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HI 281 (757)
Q Consensus 214 ~~~~~~f~r~~r---lPSGcLIq~~~n--------G~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~ 281 (757)
.|+...++|++. +.+|++|++..+ +.|+||++-|+|..- .+|.- +++.....+.-.++..|| ++
T Consensus 169 ~P~~~g~VR~~~~~~~~~~~~i~~~~g~~~l~~~~~~t~vt~~~~~Dp~G-~iP~~---lvn~~~~~~~~~~l~~L~k~v 244 (255)
T 2e3n_A 169 APLNNRCVRAKINVAMICQTLVSPPEGNQEISRDNILCKITYVANVNPGG-WAPAS---VLRAVAKREYPKFLKRFTSYV 244 (255)
T ss_dssp SCCCSSSEECEEEEEEEEEEEEC---CCCCCCGGGEEEEEEEEEEEECSS-CCCHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEeeeeeeeEeccCCCCcccccCCCcEEEEEEEEeCCCC-ccCHH---HHHHHHhccccHHHHHHHHHH
Confidence 455668999995 679999998733 579999999999774 46642 333333344445566664 44
Q ss_pred h
Q 004383 282 R 282 (757)
Q Consensus 282 e 282 (757)
+
T Consensus 245 ~ 245 (255)
T 2e3n_A 245 Q 245 (255)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=97.64 E-value=0.00063 Score=55.95 Aligned_cols=106 Identities=7% Similarity=-0.027 Sum_probs=77.5
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 725 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GR 725 (757)
+.|++|+..+.. .++-.++|+|+++.++|+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|+
T Consensus 5 ~~~~~i~~~d~~-~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 83 (115)
T 4eet_B 5 FIEKNFVITDPR-LPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINYTKSGK 83 (115)
T ss_dssp CCCCSEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred cCCCcEEEEcCC-CCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEecCCCC
Confidence 467888777653 1367899999999999999999999999776666655555555666666665433333344678899
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 726 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 726 rf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.++++ ..+-.+.|++|...|...++.+
T Consensus 84 ~~~~~-~~~~~~~~~~g~~~~~~~~~~D 110 (115)
T 4eet_B 84 KFWNL-LHLQPVRDQKGELQYFIGVQLD 110 (115)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 88874 5666778999998888777654
No 11
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=97.63 E-value=0.00055 Score=58.34 Aligned_cols=105 Identities=8% Similarity=-0.067 Sum_probs=79.3
Q ss_pred cCCCeEEecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCC
Q 004383 646 HHSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~-dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~G 724 (757)
+.|++|+..+.+ . +=.++|+|.++.+||+++.+++.+.+...-..+..+......+.++.+.|-.....-....+.|
T Consensus 5 ~~~~~i~~~d~~--~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~g 82 (128)
T 3t50_A 5 FTLMPMLITNPH--LPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINYKKSG 82 (128)
T ss_dssp CCSSCEEEECTT--STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred cCcccEEEecCC--CCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEEcCCC
Confidence 467888887764 3 6689999999999999999999999987766665555556666666666654444445567889
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 725 RAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
+.++++ ..+-.+.|++|...|...++.+
T Consensus 83 ~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 110 (128)
T 3t50_A 83 EAFWNR-LHISPVHNANGRLQHFVSSQLD 110 (128)
T ss_dssp CEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEE-EEEEEEECCCCCEEEEEEEEEE
Confidence 988874 4566678899999888777754
No 12
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.61 E-value=0.0011 Score=53.98 Aligned_cols=112 Identities=7% Similarity=-0.066 Sum_probs=84.4
Q ss_pred hHHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 004383 637 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 715 (757)
Q Consensus 637 ~~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y 715 (757)
.+..++.+++ .|++|+..+. +-.+.|+|+++.++|+++-+++.+.+......+..++.....+.++.+.|-....
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~----~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDL----QGFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEET----TCBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHhhcCceEEEECC----CCcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 3456677766 6777777654 3489999999999999999999999988666666666666777777777765544
Q ss_pred CeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 716 GGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 716 ~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.-....+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 81 ~~~~~~~~g~~~~~~-~~~~~~~~~~g~~~~~~~~~~D 117 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIE-SMCVPIYGENYQMVGALGINRD 117 (124)
T ss_dssp EEEEECTTSCEEEEE-EEEEEEECSTTCEEEEEEEEEE
T ss_pred eEEEEccCCCEEEEE-EEEEEEECCCCCEEEEEEEEec
Confidence 444567788888774 4666778999999888777754
No 13
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=97.52 E-value=0.001 Score=59.31 Aligned_cols=112 Identities=6% Similarity=-0.073 Sum_probs=82.9
Q ss_pred HHHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 004383 640 LLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 640 ~~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
.++.++ +.|++|+..+.+ .+|=.++|+|.++.++|+++.+++.+.+......+..+......+.++...|-.....-.
T Consensus 36 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 114 (166)
T 3ue6_A 36 SLVKALQMAQQNFVITDAS-LPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTSVCLL 114 (166)
T ss_dssp HHHHHHHHTTSCEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCceEEEEEcc-CCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceEEEEE
Confidence 355554 488888887752 136689999999999999999999999987666666555556666666666654444445
Q ss_pred EEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 719 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 719 RiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
...+.|+.++++ ..+--+.|++|...|...+|.+
T Consensus 115 ~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 148 (166)
T 3ue6_A 115 NYRQDGTTFWNL-FFVAGLRDSKGNIVNYVGVQSK 148 (166)
T ss_dssp EECTTSCEEEEE-EEEEEEECTTSCEEEEEEECCB
T ss_pred EEcCCCCEEEEE-EEEEeeeCCCCCEEEEEEEEEe
Confidence 567899998885 4556678899999888877755
No 14
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=97.41 E-value=0.0014 Score=56.26 Aligned_cols=104 Identities=7% Similarity=-0.066 Sum_probs=69.9
Q ss_pred CCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeE
Q 004383 648 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAV 727 (757)
Q Consensus 648 ~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf 727 (757)
+++|+..+.. .++-.++|+|++..+|++|+-+|+.+-+.+.-..+....+..+.+.+..++|-.....-....+.|+.|
T Consensus 3 ~~~i~i~d~~-~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 3 RHTFVVADAT-LPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp SCEEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred ccEEEEEcCC-CCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 5666666543 146689999999999999999999998765544443333333344444454433222334567999999
Q ss_pred EEcceEEeEeecCCCCeeEEEEEecC
Q 004383 728 SYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 728 ~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
+++- .+=-+.|++|...+...++.+
T Consensus 82 ~~~~-~~~pi~d~~G~~~~~v~~~~D 106 (109)
T 1n9l_A 82 WNLL-TVTPIKTPDGRVSKFVGVQVD 106 (109)
T ss_dssp EEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEE-EEEEEECCCCCEEEEEEEEEe
Confidence 8865 455678999998887766643
No 15
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=97.37 E-value=0.0012 Score=60.25 Aligned_cols=112 Identities=8% Similarity=-0.047 Sum_probs=81.7
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
.++.++. .|++|+..+.+ .+|=.++|.|+++.+||+++-+++.+.+...-..+..+......+.++.+.|-.....-.
T Consensus 8 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 86 (176)
T 4hia_A 8 KIRAVFDRSGVALTLVDMS-LPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQVVLR 86 (176)
T ss_dssp HHHHHHHHCSSCCEEEETT-STTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHhcCCCcEEEEecC-CCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEEEEE
Confidence 3555554 78888777654 134789999999999999999999999987777666666666667777776654443444
Q ss_pred EEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 719 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 719 RiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
...+.|+.++++ ..+--+.|++|...|...++.+
T Consensus 87 ~~~~dG~~~~~~-~~~~pi~~~~g~~~~~~~~~~D 120 (176)
T 4hia_A 87 NYRANDEPFDNL-LFLHPVGGRPDAPDYFLGSQFE 120 (176)
T ss_dssp EECTTCCEEEEE-EEEEEESSBTTBCSEEEEEEEE
T ss_pred EEcCCCCEEEEE-EEEEEeeCCCCCeEEEEEEEEE
Confidence 567899999875 3455577889998887776644
No 16
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=97.36 E-value=0.0021 Score=55.23 Aligned_cols=109 Identities=12% Similarity=-0.000 Sum_probs=73.6
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
+..++.+++ .|++|+..+. +=.+.|+|+++.++|+|+-+|+.+-+...-..+..+......+.+..++|-. +.
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~----~g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 77 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDL----KANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKP--WS 77 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECT----TCBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCC--EE
T ss_pred HHHHHHHHHhCCCeEEEECC----CCCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCC--EE
Confidence 345666654 8888887664 4579999999999999999999998765444433333333444455555432 22
Q ss_pred e--eEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 G--MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 G--vRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
| ....+.|+.++++- .+=.+.|++|...+...++.+
T Consensus 78 ~e~~~~~~dG~~~~~~~-~~~pi~~~~g~~~~~v~~~~D 115 (120)
T 2gj3_A 78 GVLVNRRKDKTLYLAEL-TVAPVLNEAGETIYYLGMHRD 115 (120)
T ss_dssp EEEEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEE-EEEEEECCCCCEEEEEEEecc
Confidence 3 34578999988754 445577999998877666643
No 17
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=97.28 E-value=0.0016 Score=64.35 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=84.4
Q ss_pred HHHHHHhc-CCCeEEecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~-dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
..++.++. .|++|+..+.+ . +=.++|.|+++.++|+|+-+|+.+.+...-..+.........+.++.+.|-.....
T Consensus 63 ~~~~~i~~~~~~~i~~~d~~--~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~e 140 (258)
T 3p7n_A 63 QWVLDLIEASPIASVVSDPR--LADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVLVE 140 (258)
T ss_dssp HHHHHHHHTCSSEEEEECTT--STTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHhcCCccEEEEcCC--CCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeEEE
Confidence 45666654 88888888764 3 56899999999999999999999999877776666666666666666666544444
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
-....+.|+.|+++- .+-.+.|++|...|...++.+
T Consensus 141 ~~~~~~dG~~~~~~~-~~~pi~d~~g~~~~~v~~~~D 176 (258)
T 3p7n_A 141 ILNYKKDGTPFRNAV-LVAPIYDDDDELLYFLGSQVE 176 (258)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCSEEEEEEEEE
T ss_pred EEEEcCCCCEEEEee-EEEEEEcCCCCEEEEEEEeee
Confidence 455688999998853 555678999999888777654
No 18
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.26 E-value=0.0019 Score=57.47 Aligned_cols=114 Identities=13% Similarity=0.028 Sum_probs=82.2
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
+..++.+++ .+++|+..+.. ..+..++|+|+++.++|+++-+++.+.+......+..+......+.++...|-.....
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~-~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKE-GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCREV 102 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEE-TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHhhccCcEEEEeCC-CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCcce
Confidence 455666655 78888777655 0122999999999999999999999998877766655555556666667666544433
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
-....+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 103 ~~~~~~~g~~~~~~-~~~~~i~~~~g~~~~~~~~~~D 138 (162)
T 3sw1_A 103 LRNYRKDGSAFWNE-LSITPVKSDFDQRTYFIGIQKD 138 (162)
T ss_dssp EEEECTTCCEEEEE-EEEEEEECSSSSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEE-EEEEEeecCCCCEEEEEEEEEe
Confidence 44457788888774 4556677899998888777754
No 19
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.25 E-value=0.0032 Score=51.56 Aligned_cols=111 Identities=10% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 004383 641 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 719 (757)
Q Consensus 641 ~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR 719 (757)
++.+++ .+++|+..+.. +.+-.+.|.|+++.++|+++-+++.+.+......+.........+.++...|-.....-..
T Consensus 8 ~~~~~~~~~~~i~~~d~~-d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDAT-QPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSYCGRLLN 86 (130)
T ss_dssp HHHHHHHTTCEEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHhcccceeeeecc-CCCCcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcceeEEEE
Confidence 455544 78888777731 1356899999999999999999999988876665555555555555566655433222234
Q ss_pred EccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 720 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 720 iSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
..+.|+.+++ ...+..+.|++|...|...++.+
T Consensus 87 ~~~~g~~~~~-~~~~~~~~~~~g~~~~~~~~~~D 119 (130)
T 2z6d_A 87 YKKDGTPFWN-LLTVTPIKDDQGNTIKFIGMQVE 119 (130)
T ss_dssp ECTTSCEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred EcCCCcEEEE-EEEEEEEECCCCCeeEEEEEEec
Confidence 5677888777 45666778899998888777754
No 20
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=97.23 E-value=0.0039 Score=49.60 Aligned_cols=93 Identities=8% Similarity=-0.023 Sum_probs=63.4
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeEEEcceEEeEe
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKV 737 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lp--sr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v 737 (757)
++-.+.|+|+++.++|+++-+++.+.+ ......+..+......+.+....|-.....-....+.|+.++++ ..+--+
T Consensus 12 ~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 90 (110)
T 1byw_A 12 ENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCFLCL-VDVVPV 90 (110)
T ss_dssp SSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEE-EEEEEE
T ss_pred CCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEEEEE-EEEEEe
Confidence 466899999999999999999999988 55555444444434444555555543332333457788888774 344566
Q ss_pred ecCCCCeeEEEEEecC
Q 004383 738 LDDDDSNHCLAFMFMN 753 (757)
Q Consensus 738 ~D~~g~~~GqAa~F~n 753 (757)
.|++|...|...++.+
T Consensus 91 ~~~~g~~~~~~~~~~D 106 (110)
T 1byw_A 91 KNEDGAVIMFILNFEV 106 (110)
T ss_dssp ECTTCCEEEEEEEEEE
T ss_pred ecCCCCEEEEEEEEEe
Confidence 7888998887766644
No 21
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=97.21 E-value=0.0027 Score=55.99 Aligned_cols=107 Identities=13% Similarity=0.035 Sum_probs=72.4
Q ss_pred HhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhc-----------HHHHHHHHHHHHHhccc
Q 004383 644 LWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAG-----------RKILCTEFAKIMQQGFA 712 (757)
Q Consensus 644 L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~-----------R~eR~~lL~~v~~qG~~ 712 (757)
+++.+++|+..+.. +.+=.++|+|+++.+||+++-+|+.+.+...-..+.. ..+....+.+..++|-.
T Consensus 31 ~~~~~~~i~~~d~~-d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDTSVALILCDLK-QKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCTTSCEEEEETT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcCCccEEEEecc-CCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 45567888877642 1355899999999999999999999988765554441 33333344445555443
Q ss_pred cCCCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 713 YLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 713 ~~y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
....-....+.|+.++++- .+--+.|++|...|...++.
T Consensus 110 ~~~e~~~~~~dG~~~~~~~-~~~~i~~~~g~~~~~v~~~~ 148 (149)
T 3d72_A 110 VQVEVVNFKKNGQRFVNFL-TMIPVRDETGEYRYSMGFQC 148 (149)
T ss_dssp EEEEEEEECTTCCEEEEEE-EEEEEECTTSSEEEEEEECC
T ss_pred eEEEEEEECCCCCEEEEEE-EEEEEEcCCCCEEEEEEEEe
Confidence 3323334578899988853 45567799999888776664
No 22
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=97.14 E-value=0.0047 Score=52.40 Aligned_cols=101 Identities=9% Similarity=0.064 Sum_probs=76.1
Q ss_pred CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCe
Q 004383 647 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRA 726 (757)
Q Consensus 647 ~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRr 726 (757)
.+++|+.++. +=.|+|.|.+..++|+|+-+||.+.+...-..|.+++.-.+.+.++.+.|-.....=--..+.|+.
T Consensus 8 ~~~~i~~~d~----~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~ 83 (117)
T 3f1p_A 8 SKTFLSEHSM----DMKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGY 83 (117)
T ss_dssp GGEEEEEECT----TCBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSE
T ss_pred CccEEEEECC----CceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCE
Confidence 4566655543 568999999999999999999999988777788888888888888888876654432234788998
Q ss_pred EEEcceEEeEeecC-CCCeeEEEEEec
Q 004383 727 VSYEQAVAWKVLDD-DDSNHCLAFMFM 752 (757)
Q Consensus 727 f~ie~A~vW~v~D~-~g~~~GqAa~F~ 752 (757)
++++- .+--+.|+ +|...+...++.
T Consensus 84 ~w~~~-~~~~~~d~~~g~~~~iv~~~~ 109 (117)
T 3f1p_A 84 VWLET-QGTVIYNPRNLQPQCIMCVNY 109 (117)
T ss_dssp EEEEE-EEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEE-eeEEEECCCCCCceEEEEEee
Confidence 88864 44456677 788777665553
No 23
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=97.07 E-value=0.0018 Score=55.44 Aligned_cols=105 Identities=11% Similarity=0.098 Sum_probs=67.3
Q ss_pred HHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChh-cHHHHHHHHHHHHHhccccCCCee
Q 004383 641 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEA-GRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 641 ~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~-~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
++.++. .|++|+. . .+=.+.|+|+++.+||+++-+++.+.+...-..+. ........+.+..++|-.....-.
T Consensus 5 ~~~~~~~~~~~i~~---~--~~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL---S--RDRVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp HHHHHHHCSSEEEE---E--ETTEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred HHHHHhcCCceEEE---e--cCCEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 556655 7888753 2 35689999999999999999999999876655443 223333334444444432222233
Q ss_pred EEccCCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 719 CVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 719 RiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
...+.|+.|+++ +....++.+|...|...+|.
T Consensus 80 ~~~~dG~~~~~~--~~~~~~~~~~~~~~~v~~~~ 111 (120)
T 3mqq_A 80 MKRAGGELFWCH--VTGRALDRTAPLAAGVWTFE 111 (120)
T ss_dssp EECTTSCEEEEE--EEEEESSTTSTTSSEEEEEE
T ss_pred EEeCCCCEEEEE--EEEEECCCCCCceeEEEEEE
Confidence 457899999886 33455677776555555553
No 24
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=97.02 E-value=0.002 Score=52.93 Aligned_cols=109 Identities=6% Similarity=-0.081 Sum_probs=74.3
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
+.++.+++ .|++|+..+. +=.+.|+|+++.++|+++-+++.+.+..... +..++.....+.++.+.+-.....-
T Consensus 3 ~~~~~~~~~~~~~i~~~d~----~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDR----EMRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAGEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEET----TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcC----CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcCCcceeeee
Confidence 45666655 6777776653 5689999999999999999999998876666 4444555566677766443332221
Q ss_pred eEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 718 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 718 vRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
....+.|+.++++ ..+-.+.|++|...|...++.+
T Consensus 78 ~~~~~~g~~~~~~-~~~~p~~~~~g~~~~~~~~~~D 112 (114)
T 3luq_A 78 CFVRADGRTQWLR-WEVRPWYEGEGRVGGVVIFTED 112 (114)
T ss_dssp EEEC--CCEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEcCCCcEEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 3456778887764 3445678999999888777654
No 25
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=96.92 E-value=0.012 Score=49.12 Aligned_cols=113 Identities=7% Similarity=0.010 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 639 ALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 639 ~~~k~L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lp--sr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
.+.+.|-+.+++|+..+.. .++=.+.|+|+++.++|+++-+++.+.+ .+.-..+..+......+.++...|-.....
T Consensus 20 ~~~~~~~~~~~~i~~~d~~-~~~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANAR-VENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERKVE 98 (138)
T ss_dssp HHHHHHTTTTSEEEEEESS-STTCBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEEEE
T ss_pred HHHHHHhcCCCCEEEEecC-CCCCEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCceeE
Confidence 3344444478888887762 0145899999999999999999999988 555555444444344444555444322222
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
=....+.|+.++++- .+--+.|++|...|...+|.+
T Consensus 99 ~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 134 (138)
T 2l0w_A 99 IAFYRKDGSCFLCLV-DVVPVKNEDGAVIMFILNFEV 134 (138)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEeCCCCCEEEEEEEEEe
Confidence 223467788877643 444566888988887766643
No 26
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=96.88 E-value=0.0024 Score=59.87 Aligned_cols=111 Identities=8% Similarity=0.008 Sum_probs=79.9
Q ss_pred hHHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 004383 637 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 715 (757)
Q Consensus 637 ~~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y 715 (757)
.++.++.++. .|++|+..+.. +-.+.|+|+++.++|+++ ++.+.+....+.+..++.....+.++.+.|-....
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 109 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 109 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccc
Confidence 3456777765 88888887643 678999999999999999 88888877766666655566788888888866554
Q ss_pred CeeEEccC-----CCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 716 GGMCVSSM-----GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 716 ~GvRiSs~-----GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
..+++... |+..+++ ..+--+.|++|...|...++.+
T Consensus 110 ~~~~~~~~~~~~gg~~~~~~-~~~~pi~~~~g~~~g~~~~~~D 151 (185)
T 3kx0_X 110 SEWRLQTDYDGSGVEERYFD-FVVTPRRRADGSIEGVQLIVDD 151 (185)
T ss_dssp EEEEEC--------CCEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred cceeEEeeccCCCCccEEEE-EEEEEEECCCCCEEEEEEEEEe
Confidence 44554221 5556553 4555678999999998877754
No 27
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=96.85 E-value=0.0032 Score=56.18 Aligned_cols=110 Identities=8% Similarity=-0.009 Sum_probs=78.2
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
++.++.++. .|++|+..+.. +=.++|.|+++.++|+++ ++.+.+..--..+..+......+.++.+.|-.....
T Consensus 16 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 90 (158)
T 3k3c_A 16 AEDVRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSGS 90 (158)
T ss_dssp HHHHHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccccc
Confidence 445666665 78888777633 668999999999999999 888888776666666666777888998877654433
Q ss_pred eeEE--ccC---CCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 GMCV--SSM---GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 GvRi--Ss~---GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
..++ ... |+..++ ...+--+.|++|...|...++.+
T Consensus 91 ~~~~~~~~~~~~g~~~~~-~~~~~pi~~~~g~~~g~~~~~~D 131 (158)
T 3k3c_A 91 EWRLQTDYDGSGVEERYF-DFVVTPRRRADGSIEGVQLIVDD 131 (158)
T ss_dssp EEEEEEESSSSCEEEEEE-EEEEEEEECTTSCEEEEEEEEEE
T ss_pred ceeEEeccCCCCcceEEE-EEEEEEeECCCCCEEEEEEEEEe
Confidence 3433 322 444444 33455677999999998877754
No 28
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=96.82 E-value=0.0037 Score=54.03 Aligned_cols=91 Identities=11% Similarity=0.045 Sum_probs=60.6
Q ss_pred hHHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC
Q 004383 637 GDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 715 (757)
Q Consensus 637 ~~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y 715 (757)
.++.++.+++ +|++|+..+.+ =.|.|.|+++.+||+|+-+|+.+.+...-.++..+......+..+.+.+. ..+
T Consensus 9 se~~~~~l~e~~~d~i~~~d~~----g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 83 (117)
T 2r78_A 9 QSNAYRALFEHAIDGIFIMDAE----GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSGWAAASLARIVGGEP-LRE 83 (117)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT----SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTSHHHHHHHHHHTTCC-EEE
T ss_pred hHHHHHHHHhcCCceEEEECCC----CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchhHHHHHHHHHHcCCc-EEE
Confidence 3566777776 88988877644 47999999999999999999999876543332222222334444443332 223
Q ss_pred CeeEEccCCCeEEEcce
Q 004383 716 GGMCVSSMGRAVSYEQA 732 (757)
Q Consensus 716 ~GvRiSs~GRrf~ie~A 732 (757)
.-..+.+.|+.++++-.
T Consensus 84 e~~~~~kdG~~~~v~~~ 100 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELS 100 (117)
T ss_dssp EEEEECTTSCEEEEEEE
T ss_pred EEEEEecCCCEEEEEEE
Confidence 33456899999887643
No 29
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=96.73 E-value=0.013 Score=50.98 Aligned_cols=89 Identities=15% Similarity=0.069 Sum_probs=64.4
Q ss_pred HHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC-Ce-
Q 004383 641 LKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-GG- 717 (757)
Q Consensus 641 ~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y-~G- 717 (757)
++.+++ .|++|+..+.+ =.+.|.|+|+.+||+|+-+|+.+.+...-..+..+......+.+..+.|-.... .+
T Consensus 18 ~~~l~~~~~d~i~~~d~~----g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (130)
T 1d06_A 18 LRSILDTVPDATVVSATD----GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMATGEKRIIGIDR 93 (130)
T ss_dssp HHHHHTTCSSEEEEEETT----SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTSCE
T ss_pred HHHHHhhCcCeEEEECCC----CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhcCCccccCCee
Confidence 455655 88998877643 479999999999999999999999877666666666556667777666643211 11
Q ss_pred --eEEccCCCeEEEcceE
Q 004383 718 --MCVSSMGRAVSYEQAV 733 (757)
Q Consensus 718 --vRiSs~GRrf~ie~A~ 733 (757)
..+.+.|+.|+++-.+
T Consensus 94 e~~~~~kdG~~~~~~~~~ 111 (130)
T 1d06_A 94 VVSGQRKDGSTFPMKLAV 111 (130)
T ss_dssp EEEEECTTSCEEEEEEEE
T ss_pred EEEEEeCCCCEEEEEEEE
Confidence 3468999999887543
No 30
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=96.71 E-value=0.02 Score=48.09 Aligned_cols=106 Identities=6% Similarity=-0.029 Sum_probs=74.7
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 725 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GR 725 (757)
+.|++|+..+.. +++=.+.|+|+++.++|+++-+++.+.+......+..+......+.++...|-.....-....+.|+
T Consensus 10 ~~~~~i~~~d~~-~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 88 (146)
T 2v0u_A 10 RIEKNFVITDPR-LPDNPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSGK 88 (146)
T ss_dssp GSSSCEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEECTTCC
T ss_pred cCCCcEEEEcCC-CCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEEEEEecCCc
Confidence 367777776652 1256899999999999999999999998876666655555555566666665443333445567888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 726 AVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 726 rf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.++++ ..+-.+.|++|...|...++.+
T Consensus 89 ~~~~~-~~~~~~~~~~g~~~~~~~~~~D 115 (146)
T 2v0u_A 89 KFWNL-FHLQPMRDQKGDVQYFIGVQLD 115 (146)
T ss_dssp EEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred EEEEE-EEEEEeECCCCCEEEEEEEEee
Confidence 77774 3555677889998887776643
No 31
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=96.61 E-value=0.019 Score=50.03 Aligned_cols=101 Identities=8% Similarity=-0.048 Sum_probs=63.6
Q ss_pred cCCCeEEecCCCCCC-CCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCC
Q 004383 646 HHSDAIMCCSLKTNA-SPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~-dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~G 724 (757)
+.|++|+..+.+ . +=.+.|.|+++.+||+|+-+|+.+.+...-..+.........+.+..++|-...+.-....+.|
T Consensus 7 ~~~~~i~~~d~~--g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG 84 (132)
T 2pr5_A 7 HVRVGVVITDPA--LEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKKDG 84 (132)
T ss_dssp CCCCEEEEECTT--STTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTS
T ss_pred cCCCcEEEEeCC--CCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEecCC
Confidence 478888877654 2 4489999999999999999999998765444333333333344455555543222223467899
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEEe
Q 004383 725 RAVSYEQAVAWKVLDDDDSNHCLAFMF 751 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g~~~GqAa~F 751 (757)
+.|+++-.+. .+.|++ ..+...++
T Consensus 85 ~~~~~~~~~~-~~~~~~--~~~~~~~~ 108 (132)
T 2pr5_A 85 TMFWNELNID-PMEIED--KTYFVGIQ 108 (132)
T ss_dssp CEEEEEEEEE-EEEETT--EEEEEEEE
T ss_pred CeeeeEEEEE-eccCCC--eeEEEEEE
Confidence 9998864332 334554 44444444
No 32
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.53 E-value=0.017 Score=59.05 Aligned_cols=107 Identities=6% Similarity=-0.041 Sum_probs=79.3
Q ss_pred hcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCC
Q 004383 645 WHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 724 (757)
Q Consensus 645 ~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~G 724 (757)
-+.|++|+..+.. .++=.++|+|+++.+||+|+-+|+.+.+...-..+..+.+....+.++.+.|-.....-....+.|
T Consensus 18 ~~~~~~i~~~D~~-~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG 96 (332)
T 2wkq_A 18 ERIEKNFVITDPR-LPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLINYTKSG 96 (332)
T ss_dssp GGCCSEEEEECTT-STTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTC
T ss_pred hcCCCcEEEecCC-CCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEEEcCCC
Confidence 4578898887652 125689999999999999999999999887666655555555556666666543333334567899
Q ss_pred CeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 725 RAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
+.++++ ..+--+.|++|...|...++.+
T Consensus 97 ~~~~~~-~~~~pi~d~~g~~~~~v~~~~D 124 (332)
T 2wkq_A 97 KKFWNL-FHLQPMRDQKGDVQYFIGVQLD 124 (332)
T ss_dssp CEEEEE-EEEEEEECTTSCEEEEEEEEEE
T ss_pred CEEEEe-eEEEEeEcCCCCEEEEEEEecc
Confidence 999885 4666788999999988877754
No 33
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=96.53 E-value=0.01 Score=50.77 Aligned_cols=101 Identities=10% Similarity=0.106 Sum_probs=70.5
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHH-hccccCCCeeE-EccC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQ-QGFAYLPGGMC-VSSM 723 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~-qG~~~~y~GvR-iSs~ 723 (757)
+.+++|+.++. +=.|+|.|.++.++|+|+-+|+.+.+...-..|.+++.-...+.++.+ .|-...+ =.| ..+.
T Consensus 10 ~~~d~i~~~d~----~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~-e~r~~~~d 84 (121)
T 3f1p_B 10 QPTRFISRHNI----EGIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSV-MFRFRSKN 84 (121)
T ss_dssp CCCEEEEEECT----TSBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEE-EEEEECTT
T ss_pred CCCceEEEECC----CceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccE-EEEEEecC
Confidence 36666666543 568999999999999999999999987666677777776777777664 3322221 123 4788
Q ss_pred CCeEEEcceEEeEeecC-CCCeeEEEEEec
Q 004383 724 GRAVSYEQAVAWKVLDD-DDSNHCLAFMFM 752 (757)
Q Consensus 724 GRrf~ie~A~vW~v~D~-~g~~~GqAa~F~ 752 (757)
|+.++++- .+--+.|+ +|...+...++.
T Consensus 85 G~~~w~~~-~~~~~~~~~~g~~~~iv~~~~ 113 (121)
T 3f1p_B 85 QEWLWMRT-SSFTFQNPYSDEIEYIICTNT 113 (121)
T ss_dssp SCEEEEEE-EEEEECCTTCCCCCEEEEEEE
T ss_pred CCEEEEEE-EEEEEECCCCCceeEEEEEeE
Confidence 99888863 33345676 678777665553
No 34
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=96.44 E-value=0.23 Score=49.34 Aligned_cols=150 Identities=15% Similarity=0.157 Sum_probs=89.1
Q ss_pred chHHHHHHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChH
Q 004383 300 PAVLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPA 379 (757)
Q Consensus 300 ~~sl~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~ 379 (757)
.+.+.++++.....|-.-+.. ..+|.... ..++|+|..+...+ . ++.+ .++...+ ++||+
T Consensus 21 ~~~y~~~a~~~~~~~l~~~~~--~~~W~~~~--~~~gv~v~~~~~~~-----~--------~~~~--~k~~~~v-~~~~~ 80 (231)
T 2r55_A 21 QSMAAQMSEAVAEKMLQYRRD--TAGWKICR--EGNGVSVSWRPSVE-----F--------PGNL--YRGEGIV-YGTLE 80 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CSSCEEEE--CCSSEEEEEEECSS-----S--------SSEE--EEEEEEE-SSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhcC--CCCCEEEE--eCCCEEEEEEccCC-----C--------CCcE--EEEEEEE-CCCHH
Confidence 358999999999888876643 47899775 35679998887642 1 2223 3556666 89999
Q ss_pred HHHHHH--hh--hhcccccccccchhhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEE-ecCCCCCcccc
Q 004383 380 LLVRFL--RE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVR-LEGHAFSPEDV 454 (757)
Q Consensus 380 ~lf~FL--Rd--~RseWd~~~~d~~sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr-~~~~~~~~~~~ 454 (757)
.||++| .| .|.+||.. +. ..+++..|. ++ .. |++ +...-. ..-
T Consensus 81 ~v~~~l~~~d~~~r~~Wd~~----~~--------------------~~~vle~i~---~~-~~--i~~~~~~~~~--~~~ 128 (231)
T 2r55_A 81 EVWDCVKPAVGGLRVKWDEN----VT--------------------GFEIIQSIT---DT-LC--VSRTSTPSAA--MKL 128 (231)
T ss_dssp HHHHHHCC--CCSHHHHCTT----CS--------------------EEEEEEECS---SS-EE--EEEEECCCBT--TTT
T ss_pred HHHHHHHhhCcchhhhhccc----cc--------------------eeEEEEEcC---CC-EE--EEEEEecccc--CCc
Confidence 999999 76 89999973 11 023443332 11 12 233 211100 012
Q ss_pred ccccceEEEeeecCCCCCCCCceeEEEeecccCCC----CCCC--CcccCceEEecC
Q 004383 455 ALARDMYLLQLCSGIDENTVGACAQLVFAPIDESF----ADDA--PLLASGFRVIPL 505 (757)
Q Consensus 455 ~~~~~~llLQe~~~~D~~a~GscS~vVyAPVD~~d----s~~v--pLLPSGF~IlP~ 505 (757)
+-+||..+|.-+ ..+ ..|+ -.++.-.||-+. +.+| .++|+||.|-|+
T Consensus 129 v~~RDfv~~r~~-~~~--~~g~-~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~ 181 (231)
T 2r55_A 129 ISPRDFVDLVLV-KRY--EDGT-ISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPL 181 (231)
T ss_dssp BCCEEEEEEEEE-EEC--TTSC-EEEEEEECCCTTSCCCTTCEEEEECSEEEEEEEC
T ss_pred cCCCeEEEEEEE-EEc--CCCE-EEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEe
Confidence 346888888875 454 2363 123566676432 2222 367888888883
No 35
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=96.40 E-value=0.027 Score=46.62 Aligned_cols=82 Identities=22% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 719 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR 719 (757)
++.++ +.+++|+..+.+ =.++|+|+++.+||+++-+++.+.+.....++..+.. +..+.+.+. ..+.-..
T Consensus 15 ~~~~~~~~~~~i~~~d~~----g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~----~~~~~~~~~-~~~e~~~ 85 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDN----WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD----WEEIRQKNN-YTFKTRY 85 (118)
T ss_dssp HHHHHHHCSSEEEEECTT----SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC----HHHHHHHSE-EEEEEEE
T ss_pred HHHHHhcCCceEEEECCC----CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH----HHHHHhcCc-EEEEEEE
Confidence 44454 488998887644 4899999999999999999999998766554333222 334444443 2334445
Q ss_pred EccCCCeEEEcc
Q 004383 720 VSSMGRAVSYEQ 731 (757)
Q Consensus 720 iSs~GRrf~ie~ 731 (757)
..+.|+.++++-
T Consensus 86 ~~~~g~~~~~~~ 97 (118)
T 3olo_A 86 RSQSGRIFLVEM 97 (118)
T ss_dssp ECTTCCEEEEEE
T ss_pred EccCCCEEEEEE
Confidence 678999888764
No 36
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=96.29 E-value=0.018 Score=48.42 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=62.4
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
..++.+++ .|++|+..+.+ =.++|.|+++.++|+++-+++.+.+..-..++...+.......++.+.|-..
T Consensus 19 ~~~~~i~~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 90 (125)
T 3fc7_A 19 KKFESLVSDSPDGIVHLTTN----GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT---- 90 (125)
T ss_dssp -------CCSCCEEEEEETT----SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE----
T ss_pred HHHHHHHhcCCCeEEEEcCC----CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE----
Confidence 34566665 78888887544 5899999999999999999999999887775555555555556677666422
Q ss_pred eEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 718 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 718 vRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
......| ..+++ ..+-.+ .++|...|...+|.+
T Consensus 91 ~~~~~~~-~~~~~-~~~~p~-~~~~~~~~~~~~~~D 123 (125)
T 3fc7_A 91 RSEDAVG-GRHYH-NQYIPV-DSHRKSDTFQLVSRD 123 (125)
T ss_dssp EEEEEET-TEEEE-EEEEES-STTTTTTEEEEEEEE
T ss_pred EeEcCCC-cEEEE-EEEEeE-ecCCCeEEEEEEEec
Confidence 2222331 33332 222223 444666666666543
No 37
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=96.28 E-value=0.044 Score=44.76 Aligned_cols=110 Identities=10% Similarity=0.010 Sum_probs=71.5
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccC
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYL 714 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lp--sr~sae~~~R~eR~~lL~~v~~qG~~~~ 714 (757)
+..++.+.. .|++|+..+.+ +=.+.|.|.++.++|+++-+++.+.+ +.....+.+++.-...+.++. .|-...
T Consensus 10 ~~~~~~~~~~~~~~i~~~d~~---~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 85 (125)
T 3eeh_A 10 ERRVRELTEATNDILWEFTAD---LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQSLM-DGESAD 85 (125)
T ss_dssp CHHHHHHHSCCCCEEEEEETT---SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHHHH-TTCCEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHHHH-cCCCcc
Confidence 345666655 67777666543 24899999999999999999999877 333445666665556666633 332221
Q ss_pred CCeeE-EccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 715 PGGMC-VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 715 y~GvR-iSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.-+| ..+.|+.++++- .+-.+.|++|...+...++.+
T Consensus 86 -~e~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~~~~~~~D 123 (125)
T 3eeh_A 86 -VECRVNATEEYQRWVWI-QGEPITNDAGETVRVAGFARD 123 (125)
T ss_dssp -EEEEECGGGTTCEEEEE-EEEEEECTTSCEEEEEEEEEE
T ss_pred -EEEEEEcCCCCEEEEEE-ecEEEECCCCCEEEEEEEEEe
Confidence 1233 345687777653 445567889998887766643
No 38
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.26 E-value=0.057 Score=52.26 Aligned_cols=105 Identities=10% Similarity=-0.014 Sum_probs=73.2
Q ss_pred HhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccC
Q 004383 644 LWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSM 723 (757)
Q Consensus 644 L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~ 723 (757)
+-+.+++|+..+ .+-.++|+|+++.+|++|+-+|+.+.+.+.-..+....+....+.+..+.|-.....=....+.
T Consensus 117 ~~~~~~~i~~~d----~~g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k~ 192 (227)
T 3ewk_A 117 MDANSEMILLTD----RAGRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRLLNRRRT 192 (227)
T ss_dssp HHTCCSEEEEEC----TTSCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCEEEEEEC
T ss_pred HhcCcCeEEEEc----CCCcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEEEEECCC
Confidence 345778887754 3568999999999999999999999887766555444444555555555554333344456677
Q ss_pred CC------eEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 724 GR------AVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 724 GR------rf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
|+ .|+++- .+=-+.|++|...|...+|.+
T Consensus 193 G~~~~dg~~~~~~~-~~~pi~d~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 193 GPAPHDAEDYWAEI-STTPIHTDGNGLVGYVQIQHD 227 (227)
T ss_dssp CSSSSCEEEEEEEE-EEEEEECSSSCEEEEEEEEEC
T ss_pred CCcCcccceEEEEE-EEEEEECCCCCEEEEEEEecC
Confidence 76 676643 455678999999888777643
No 39
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=96.17 E-value=0.019 Score=48.94 Aligned_cols=83 Identities=8% Similarity=0.043 Sum_probs=60.3
Q ss_pred CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC-Ce---eEEcc
Q 004383 647 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-GG---MCVSS 722 (757)
Q Consensus 647 ~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y-~G---vRiSs 722 (757)
.+++|+..+. +=.+.|.|+++.+||+|+-+|+.+.+...-.++..+......+.+..+.|-.... .+ ....+
T Consensus 2 ~~d~i~~~d~----~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 2 IPDAMIVIDG----HGIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp CCCEEEEEET----TSBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CcceEEEECC----CCeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 5778777653 4579999999999999999999999877666666666555667777666653221 12 23579
Q ss_pred CCCeEEEcceE
Q 004383 723 MGRAVSYEQAV 733 (757)
Q Consensus 723 ~GRrf~ie~A~ 733 (757)
.|+.|.++-.+
T Consensus 78 dG~~~~~~~~~ 88 (119)
T 2vv6_A 78 DGTTFPMHLSI 88 (119)
T ss_dssp TSCEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99999887543
No 40
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=96.08 E-value=0.022 Score=55.22 Aligned_cols=92 Identities=8% Similarity=-0.065 Sum_probs=66.8
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeEEEcceEEeEeec
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 739 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v~D 739 (757)
.+=.++|+|+++.+||+|+.+|+.+.+.+.-..+...++....+.+....|-.....-....+.|+.++++- .+=-+.|
T Consensus 7 ~~g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~-~~~p~~d 85 (227)
T 3ewk_A 7 LQGRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS-TIVPLMD 85 (227)
T ss_dssp TTCBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE-EEEEEEC
T ss_pred CCCcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee-EEEEEEc
Confidence 455799999999999999999999998876654444344444444555566544444456789999999853 4455779
Q ss_pred CCCCeeEEEEEec
Q 004383 740 DDDSNHCLAFMFM 752 (757)
Q Consensus 740 ~~g~~~GqAa~F~ 752 (757)
++|...+...++.
T Consensus 86 ~~g~~~~~~~~~~ 98 (227)
T 3ewk_A 86 NAGKPRQYISIRR 98 (227)
T ss_dssp SSSCEEEEEEEEE
T ss_pred CCCCEEEEEEEEE
Confidence 9999888766654
No 41
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.06 E-value=0.02 Score=48.10 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=65.7
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC 719 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR 719 (757)
.+.++ +.|++|+..+.+ =.+.|.|++|.++|+++.+++.+.+...-..+... ....+.++.+.|-.....-++
T Consensus 9 ~~~il~~~~~~i~~~D~~----g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 82 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG----LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVT 82 (115)
T ss_dssp HHHHHHHCSSEEEEECTT----CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC----CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceE
Confidence 33344 489999887765 37999999999999999999999876654433221 123455566655321111223
Q ss_pred EccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 720 VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 720 iSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
+.+.|+++.++ ..+-.+.| +|. .|.-++|.+
T Consensus 83 ~~~~g~~~~~~-~~~~pi~~-~g~-~~~l~~~~D 113 (115)
T 3b33_A 83 FVVDGRPLMLE-VTVSPITW-QRQ-LMLLVEMRK 113 (115)
T ss_dssp EEETTEEEEEE-EEEEEEEE-TTE-EEEEEEEEE
T ss_pred EecCCCEEEEE-EEEEEeec-CCc-eEEEEEEEe
Confidence 32578877653 45556667 776 566666643
No 42
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=96.05 E-value=0.032 Score=52.77 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=76.0
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcccc-----
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY----- 713 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~----- 713 (757)
+++.++. .|++|+.-+. +=+++|.|+++.++++++-+|+.+-+..-.+++ .++.-.+.+.++.+.|--.
T Consensus 23 ~l~~il~~~~~gi~v~D~----~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~~~~ 97 (152)
T 3mxq_A 23 LLSELLDQLSFALCIVRN----DYVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFSSWE 97 (152)
T ss_dssp HHHHHHHHHCCEEEEEET----TSBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEEECC
T ss_pred HHHHHHhcCCCCEEEEcC----CCEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceeeecc
Confidence 4455554 6788877653 568999999999999999999999988777766 6666666788888877321
Q ss_pred -------CCCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 714 -------LPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 714 -------~y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
...+-.+++.|+. .+-+.+++-|.|++|.+.|.++++.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~~ti~Pl~d~~G~v~gv~~ii~D 143 (152)
T 3mxq_A 98 QKPHLLPFKSSRPVSGEEEQ-MYQNLEVIPIHSEDGTIEHVCLCVYD 143 (152)
T ss_dssp SSSCSSCC----------CC-EEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred cccccccccccCCCCCCCcE-EEEEEEEEEEECCCCCEEEEEEEEEE
Confidence 1112234555654 45578999999999999999988754
No 43
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=95.94 E-value=0.03 Score=46.73 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=69.3
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGR 725 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GR 725 (757)
+.|++|+..+. +=.++|+|+++.++|+++-+++.+.+......+..+......+.++.+.+.. .+.-....+.|+
T Consensus 7 ~~~~~i~~~d~----~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~ 81 (126)
T 3mjq_A 7 TIEDMILIINR----EGRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEKKEGT 81 (126)
T ss_dssp GCSSEEEEEET----TSBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEECTTSC
T ss_pred hCCceEEEEeC----CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEccCCC
Confidence 36788877654 3589999999999999999999999887777777777778888888877655 222223467888
Q ss_pred eEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 726 AVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 726 rf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
.++++- .+..+.+ ++ ..|...++.
T Consensus 82 ~~~~~~-~~~~~~~-~~-~~~~~~~~~ 105 (126)
T 3mjq_A 82 SIPAKA-RIWQGKW-HN-EPCLFAIIK 105 (126)
T ss_dssp EEEEEE-EEEEEES-SS-SEEEEEEEE
T ss_pred EEEEEE-EEEeeeE-CC-ceEEEEEEE
Confidence 887753 3333333 22 345444443
No 44
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=95.79 E-value=0.049 Score=45.97 Aligned_cols=98 Identities=10% Similarity=0.089 Sum_probs=64.7
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhc-cccCCCeeEEccCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQG-FAYLPGGMCVSSMG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG-~~~~y~GvRiSs~G 724 (757)
+.+++|+.++. +=.+.|.|+++.++|+|+-+|+.+.+...-..|.+++.....+.++++++ -.....---..+.|
T Consensus 11 ~~~~~i~~~d~----~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~dG 86 (121)
T 2kdk_A 11 KPTEFITRFAV----NGKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAKDG 86 (121)
T ss_dssp CSSEEEEEECT----TSBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECSSS
T ss_pred CCccEEEEECC----CeeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEcCC
Confidence 46777776654 35799999999999999999999987655555666666666777776653 21111111247899
Q ss_pred CeEEEcceEEeEeecCCC-CeeEEE
Q 004383 725 RAVSYEQAVAWKVLDDDD-SNHCLA 748 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g-~~~GqA 748 (757)
+.++++- .+--+.|++| ...+..
T Consensus 87 ~~~~~~~-~~~~~~d~~~~~~~~~v 110 (121)
T 2kdk_A 87 SFVTLKS-QWFSFTNPDTKELEYIV 110 (121)
T ss_dssp CEEEEEE-EEEEEECCSSSCEEEEE
T ss_pred CEEEEEE-EEEEEECCCCCeeeEEE
Confidence 9988863 3334567654 444433
No 45
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=95.65 E-value=0.03 Score=46.35 Aligned_cols=109 Identities=10% Similarity=-0.066 Sum_probs=70.1
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhc--ccccccCChhcHHHHHHHHHHHHHhccccCCC
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQD--IMLDKILDEAGRKILCTEFAKIMQQGFAYLPG 716 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~--lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~ 716 (757)
.++.+.. .+++|...+.+ -.++|.|.++.++|+++-+++.+ ..+.....|.+++.....+.++.+.|-.....
T Consensus 8 ~l~~~~~~~~~~i~~~d~~----~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~e 83 (125)
T 3nja_A 8 LLHTAESDAGIGSWVLHME----SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPFDVE 83 (125)
T ss_dssp ---------CCEEEEEETT----TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCEEEE
T ss_pred HHHHHHHhCCeeEEEEEcC----CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCceEE
Confidence 3444444 67777665543 46789999999999999999877 23333345677777777888888877543322
Q ss_pred eeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 717 GMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 717 GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
---..+.|+.++++-... -+.|++|...+...++.+
T Consensus 84 ~~~~~~~g~~~~~~~~~~-~~~~~~g~~~~~~g~~~D 119 (125)
T 3nja_A 84 YRIVRPDGQVRELLERNH-IQRQASGQVDHLWGTVID 119 (125)
T ss_dssp EEEECTTSCEEEEEEEEE-EEECTTSCEEEEEEEEEE
T ss_pred EEEECCCCCEEEEEEeeE-EEECCCCCEEEEEEEEEe
Confidence 222467788887765433 567889998887766644
No 46
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=95.46 E-value=0.064 Score=45.55 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=50.5
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHh--cccccccCChhcHHHHHHHHHHHHHhccccCC
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQ--DIMLDKILDEAGRKILCTEFAKIMQQGFAYLP 715 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~--~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y 715 (757)
..++.+++ .|++|+..+. +=.+.|.|+++.+||+|+-+|+. +.+..-... ++......+.+....+ ...+
T Consensus 17 ~~~~~l~e~~~~~i~~~d~----~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 89 (126)
T 3bwl_A 17 SRLEALFENSPDMIDVLDA----DGTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSGFSVDE-RRKF 89 (126)
T ss_dssp HHHHHHHHHCSSEEEEECT----TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHTCCTTC-EEEE
T ss_pred HHHHHHHhhCCcEEEEEcC----CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHHHhcCC-Ccce
Confidence 34566665 8888887654 45799999999999999999994 443322222 3322222221111111 1112
Q ss_pred CeeEEccCCCeEEEc
Q 004383 716 GGMCVSSMGRAVSYE 730 (757)
Q Consensus 716 ~GvRiSs~GRrf~ie 730 (757)
......+.|+.++++
T Consensus 90 e~~~~~~dG~~~~~~ 104 (126)
T 3bwl_A 90 EGLYERRDGSTMSVE 104 (126)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEEeCCCCEEEEE
Confidence 233458899999886
No 47
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=95.46 E-value=0.047 Score=45.13 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=74.7
Q ss_pred HHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc--cccCChhcHHHHHHHHHHHHHhccccC
Q 004383 638 DALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML--DKILDEAGRKILCTEFAKIMQQGFAYL 714 (757)
Q Consensus 638 ~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lps--r~sae~~~R~eR~~lL~~v~~qG~~~~ 714 (757)
++.++.+.+ .|++|...+ .+-.++|.|.++.++|+++-+++.+.+. .....|.+|+...+.+.++.+.|-...
T Consensus 3 ~~~~~~l~~~~~~~i~~~d----~~~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLD----VSGQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHTTCCCCCEEEC----TTSCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHhcCCceEEEEE----cCCCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 455677765 666665544 3567889999999999999999877654 223467777777777888877765433
Q ss_pred CCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 715 PGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 715 y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
..---+.+.|+..+++. ..=-+.|++|...+...++.
T Consensus 79 ~e~r~~~~~g~~~w~~~-~~~~~~~~~g~~~~~~g~~~ 115 (118)
T 3icy_A 79 LVYRIVTPEGKLHWIED-HMRSSFSDDGLFSGIDGILC 115 (118)
T ss_dssp EEEEEECTTCCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 33223467888777753 33346788999887655543
No 48
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=94.92 E-value=0.1 Score=45.78 Aligned_cols=98 Identities=11% Similarity=-0.043 Sum_probs=64.1
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcccc----CC
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY----LP 715 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~----~y 715 (757)
++.++ +.+++|+..+. +=.++|.|+++.++|+++.+++.+.+......+..+......+..+...+... ..
T Consensus 42 ~~~~l~~~~~~i~~~d~----~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINE----NDEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSR 117 (167)
T ss_dssp HHHHHHTCSSEEEEECT----TSBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC----------C
T ss_pred HHHHHHhCCCCEEEECC----CCcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccccce
Confidence 45554 47888877654 44799999999999999999999998887777766666666666766655431 11
Q ss_pred CeeEEccCCCeEEEcceEEeEeecCCCCe
Q 004383 716 GGMCVSSMGRAVSYEQAVAWKVLDDDDSN 744 (757)
Q Consensus 716 ~GvRiSs~GRrf~ie~A~vW~v~D~~g~~ 744 (757)
.-....+.|+.++++-.. -.+ +++|..
T Consensus 118 ~~~~~~~~g~~~~~~~~~-~~~-~~~g~~ 144 (167)
T 1v9y_A 118 ELQLEKKDGSKIWTRFAL-SKV-SAEGKV 144 (167)
T ss_dssp EEEEECTTSCEEEEEEEE-EEE-EETTEE
T ss_pred EEEEEcCCCcEEEEEEEE-EEE-ecCCCE
Confidence 223356778887775322 223 555654
No 49
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=94.89 E-value=0.061 Score=48.81 Aligned_cols=87 Identities=16% Similarity=0.180 Sum_probs=56.0
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcc------cc
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGF------AY 713 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~------~~ 713 (757)
++.++ ..+++|+..+.+ =.++|+|+||.+||+++-+++.+.+...-..+..++....++.+..+.|- ..
T Consensus 9 l~~i~~~~~d~i~~~D~~----g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNAN----GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPVQH 84 (129)
T ss_dssp HHHHHTTCSSEEEEEETT----SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCSCE
T ss_pred HHHHHhcCCceEEEECCC----CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCcccccccCC
Confidence 44454 488999887654 48999999999999999999999998766666555443333333322221 00
Q ss_pred C-CCeeEEccCCCeEEEcc
Q 004383 714 L-PGGMCVSSMGRAVSYEQ 731 (757)
Q Consensus 714 ~-y~GvRiSs~GRrf~ie~ 731 (757)
. ..-....+.|+.|+++-
T Consensus 85 ~~~E~~~~rkdG~~~~vel 103 (129)
T 3mfx_A 85 PAQETTLICASGKAKDVEL 103 (129)
T ss_dssp EEEEEEEECTTSCEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEE
Confidence 0 11123467899999864
No 50
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=94.78 E-value=0.6 Score=40.90 Aligned_cols=140 Identities=12% Similarity=0.082 Sum_probs=78.4
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEEE
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVCE 202 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVvD 202 (757)
.+..|...+.++-+.|.|.+.|.+-+|.+.-+.+...+.+|..--+ .+..+ +.+.-+..|+... +++.-++..
T Consensus 6 ~~~~i~ap~~~V~~~l~d~~~~~~w~p~~~~~~~~~~~~~g~~~~~--~~~~~----g~~~~~~~~~~~~-~~~~~i~~~ 78 (147)
T 2d4r_A 6 AERYIPAPPERVYRLAKDLEGLKPYLKEVESLEVVAREGARTRSRW--VAVAM----GKKVRWLEEEEWD-DENLRNRFF 78 (147)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHGGGCTTEEEEEEEEEETTEEEEEE--EEEET----TEEEEEEEEEEEE-TTTTEEEEE
T ss_pred EEEEeCCCHHHHHHHHhChhhhhhhcccccEEEEEEeCCCccEEEE--EEEeC----CceEEEEEEEEEc-CCCcEEEEE
Confidence 4556777889999999999999888877655555544334422111 11221 2233345565543 333322221
Q ss_pred eecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-HH
Q 004383 203 RSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-HI 281 (757)
Q Consensus 203 vSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~~ 281 (757)
..++ + ...+.. -+-++|.++| |+|+|..+.+....-+..++.+++..-+-=+.+..+.+|+ .+
T Consensus 79 -~~~g----~----~~~~~~------~~~~~~~~~g-T~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~ 142 (147)
T 2d4r_A 79 -SPEG----D----FDRYEG------TWVFLPEGEG-TRVVLTLTYELTIPIFGGLLRKLVQKLMQENVESLLKGLEERV 142 (147)
T ss_dssp -EEEE----S----CSEEEE------EEEEEECSSS-EEEEEEEEEECCCTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -eccC----C----hhheEE------EEEEEECCCC-cEEEEEEEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1 011111 1335777787 9999998888764434455666654443346677777774 67
Q ss_pred hhhc
Q 004383 282 RQIA 285 (757)
Q Consensus 282 erla 285 (757)
|+.+
T Consensus 143 e~~~ 146 (147)
T 2d4r_A 143 LAAS 146 (147)
T ss_dssp HHTT
T ss_pred Hhhc
Confidence 7643
No 51
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=94.59 E-value=0.16 Score=42.64 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=66.5
Q ss_pred CeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc-ccccCChhcHHHHHHHHHHHHHhccccCCCeeE-EccCCCe
Q 004383 649 DAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM-LDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMGRA 726 (757)
Q Consensus 649 ~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lp-sr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR-iSs~GRr 726 (757)
+.|...+.. +-.|.|.|.+..++|+++-+++.+.. +.....|.+|+.-...+.++.+.|-.... =.| +.+.|+.
T Consensus 4 ~giw~~d~~---~~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~-e~r~~~~dG~~ 79 (115)
T 3h9w_A 4 AIPWKINWQ---TMAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEA-DYRALHRDGHY 79 (115)
T ss_dssp CEEEEEETT---TTEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEE-EEEEECTTSCE
T ss_pred eEEEEEEcC---CCcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccE-EEEEEcCCCCE
Confidence 344444433 45699999999999999999998821 22334677777777778888877752221 123 3678888
Q ss_pred EEEcceEEeEeecCCCCeeEEEEEec
Q 004383 727 VSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 727 f~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
.+++- ..--+.|++|...+...+..
T Consensus 80 ~w~~~-~~~~~~d~~G~~~~~~G~~~ 104 (115)
T 3h9w_A 80 VWIRD-VVHVVRDDSGEVEALIGFMF 104 (115)
T ss_dssp EEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEEE-EEEEEECCCCCEEEEEEEEe
Confidence 88754 34445799999877655543
No 52
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=94.47 E-value=0.02 Score=48.45 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=51.2
Q ss_pred CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHH-Hhcccc---CCCeeEEcc
Q 004383 647 HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIM-QQGFAY---LPGGMCVSS 722 (757)
Q Consensus 647 ~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~-~qG~~~---~y~GvRiSs 722 (757)
.+++|+..+.+ +=.+.|+|++|.+||+|+-+|+.+.+...-..+..++....+..+.. ..|... ...-....+
T Consensus 7 ~~~~i~~~d~~---~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (114)
T 1ll8_A 7 FNKAIFTVDAK---TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISR 83 (114)
T ss_dssp TTCEEEEEETT---TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHHHHTTSSTTSSSSCSSCCCSSSEEECCT
T ss_pred CCceEEEEECC---CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHHHHHHHHhhccCCcceeccCcEEEEEec
Confidence 34677766532 25799999999999999999999998776665544433322222111 122211 111123578
Q ss_pred CCCeEEEcc
Q 004383 723 MGRAVSYEQ 731 (757)
Q Consensus 723 ~GRrf~ie~ 731 (757)
.|+.|.++-
T Consensus 84 dG~~~~v~~ 92 (114)
T 1ll8_A 84 SGEKIPVSV 92 (114)
T ss_dssp TCCCEEEEC
T ss_pred CCCEEEEEE
Confidence 899998864
No 53
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=94.46 E-value=1.4 Score=44.49 Aligned_cols=56 Identities=30% Similarity=0.506 Sum_probs=37.2
Q ss_pred CCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHH-HHHHhhhhcccccc
Q 004383 322 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALL-VRFLREHRSEWADY 395 (757)
Q Consensus 322 ~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~l-f~FLRd~RseWd~~ 395 (757)
..++|..... .++|+|..++..+ + . .+-.-++..-+ +.+|+.+ +++|.| |.+||..
T Consensus 48 ~~~gW~~~~~--~~gi~V~~k~~~~---~-~----------~~~~~K~~~~v-~~~~~~v~~~ll~d-r~~Wd~~ 104 (237)
T 2pso_A 48 KFKGWVTCSS--TDNTDLAFKKVGD---G-N----------PLKLWKASVEV-EAPPSVVLNRVLRE-RHLWDED 104 (237)
T ss_dssp HCCSCEEECC--SSSCEEEEECCCS---S-C----------CCCEEEEEEEE-SSCHHHHHHHHHHC-GGGTCTT
T ss_pred CCCCCEEEec--CCCeEEEEEEcCC---C-C----------CcEEEEEEEEE-cCChHHHHHHHHhh-hhhHHhh
Confidence 4568987653 5789999998632 2 1 12234566777 5666555 578888 9999974
No 54
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=94.42 E-value=0.51 Score=36.25 Aligned_cols=92 Identities=8% Similarity=-0.063 Sum_probs=54.6
Q ss_pred CCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEE-ccCCCe
Q 004383 648 SDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCV-SSMGRA 726 (757)
Q Consensus 648 ~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRi-Ss~GRr 726 (757)
+++|+..+.+ =.++|.|+++.++|+++-+++.+.+.... +.. .+....+.++.+.|... . ++. ...++
T Consensus 2 ~~~i~~~d~~----g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~~-~~~~~~~~~~~~~~~~~--~-~~~~~~~~~- 70 (96)
T 3a0s_A 2 ETAIITLSKD----GRITEWNKKAEQLFGLKKENVLGRRLKDL--PDF-EEIGSVAESVFENKEPV--F-LNFYKFGER- 70 (96)
T ss_dssp CCEEEEEETT----SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TTC-HHHHHHHHHHHHHTCCE--E-EEEEEETTE-
T ss_pred CceEEEEcCC----CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cch-HHHHHHHHHHhccCCeE--E-EEEEcCCcE-
Confidence 4566665533 46899999999999999999999876654 222 22333445555554322 1 222 22333
Q ss_pred EEEcceEEeEeecCCCC-eeEEEEEec
Q 004383 727 VSYEQAVAWKVLDDDDS-NHCLAFMFM 752 (757)
Q Consensus 727 f~ie~A~vW~v~D~~g~-~~GqAa~F~ 752 (757)
++ ...+--+.|++|. ..|...+|.
T Consensus 71 -~~-~~~~~p~~~~~~~~~~g~v~~~~ 95 (96)
T 3a0s_A 71 -YF-NIRFSPFRNAKTQLLEGVIITID 95 (96)
T ss_dssp -EE-EEEEEEEECTTTCCEEEEEEEEE
T ss_pred -EE-EEEEEEeEcCCCCeeeEEEEEec
Confidence 23 2344456677654 567766664
No 55
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=94.28 E-value=1.4 Score=43.65 Aligned_cols=55 Identities=24% Similarity=0.382 Sum_probs=40.1
Q ss_pred CCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 323 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 323 ~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
..+|..... .++|+|..+...+ ..|-+. ++..-+ ++||+.||++|.| .|.+||..
T Consensus 42 ~~~W~~~~~--~~gv~vy~~~~~~-------------~~~~~~--k~~~~v-~~~~~~v~~~l~d~~~r~~Wd~~ 98 (224)
T 1jss_A 42 EDEWRVAKK--AKDVTVWRKPSEE-------------FNGYLY--KAQGVM-DDVVNNVIDHIRPGPWRLDWDRL 98 (224)
T ss_dssp GGGCEEEEE--ETTEEEEEEECSS-------------SSSEEE--EEEEEE-SSCHHHHHHHHSSSTTHHHHCSS
T ss_pred CCCCEEEEE--CCCEEEEEEeccC-------------CCceEE--EEEEEE-eCCHHHHHHHHhCcccccccccc
Confidence 568986643 3789999986542 123333 555666 8999999999998 89999974
No 56
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=94.10 E-value=2.3 Score=41.96 Aligned_cols=72 Identities=17% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHH
Q 004383 304 RTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVR 383 (757)
Q Consensus 304 ~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~ 383 (757)
.++++.-...+..-+. ..++|.... ...++|.|..++.++ .|.+ -++...+ ++||+.||+
T Consensus 13 ~~~~~~~~~~~l~~~~--~~~gW~~~~-~~~~gv~vy~~~~~~--------------~g~~--~k~~~~v-~~~~~~v~~ 72 (221)
T 3p0l_A 13 LQQGEEAMQKALGILS--NQEGWKKES-QQDNGDKVMSKVVPD--------------VGKV--FRLEVVV-DQPMERLYE 72 (221)
T ss_dssp HHHHHHHHHHHHHHHH--SCTTCEEEE-ECTTSCEEEEEECSS--------------SCEE--EEEEEEE-SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CCCCCeEee-ecCCCcEEEEEEcCC--------------CceE--EEEEEEE-cCCHHHHHH
Confidence 3455554444444333 357899773 124567888887531 1323 3666677 899999999
Q ss_pred HHh-h--hhcccccc
Q 004383 384 FLR-E--HRSEWADY 395 (757)
Q Consensus 384 FLR-d--~RseWd~~ 395 (757)
+|. | .|.+||..
T Consensus 73 ~l~~d~~~r~~Wd~~ 87 (221)
T 3p0l_A 73 ELVERMEAMGEWNPN 87 (221)
T ss_dssp HHTTTGGGTTTSCTT
T ss_pred HHHhccchhhhcCcc
Confidence 995 4 89999974
No 57
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=94.08 E-value=0.73 Score=47.72 Aligned_cols=150 Identities=15% Similarity=0.190 Sum_probs=88.4
Q ss_pred CCCCchHHHHHHHHHHHHHhhhcccCCCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeecccc
Q 004383 296 GGRQPAVLRTFSQRLSRGFNDAINGFLDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQN 375 (757)
Q Consensus 296 ~GR~~~sl~~LaqRM~~~F~~av~~s~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~p 375 (757)
|-+. +=+.|+.-.+.....- ...++|..... .++|+|..+... +.++-++.+-+ +
T Consensus 43 w~~~--~~~~l~~~n~~al~~l---~~~~gW~~~~~--~~gv~Vy~~~~~-----------------~~l~~k~~~~v-~ 97 (258)
T 3fo5_A 43 WDPS--NQVYLSYNNVSSLKML---VAKDNWVLSSE--ISQVRLYTLEDD-----------------KFLSFHMEMVV-H 97 (258)
T ss_dssp CCGG--GHHHHHHHHHHHHHHH---HTCSCCEEEEE--ETTEEEEEEECS-----------------SCEEEEEEEEE-S
T ss_pred cCcc--cceecccCCHHHHHhh---hccCCCEEEec--CCCeEEEEEECC-----------------CceEEEEEEEE-e
Confidence 6665 7788887666655432 35689997653 468999885321 13455777888 7
Q ss_pred CChHHHHHHHhh--hhcccccccccchhhhhhccCCCCCCCCCCCCCCccceEeeccccCCCCceEEEEEecCCCCCccc
Q 004383 376 VPPALLVRFLRE--HRSEWADYGVDAYSAACLKASPYAVPCARPGGFPSSHVILPLAHTVEHEEFLEVVRLEGHAFSPED 453 (757)
Q Consensus 376 vpP~~lf~FLRd--~RseWd~~~~d~~sa~~~~~~~~~~~~~~~G~~~~~q~~~~ia~g~~~~n~vsvlr~~~~~~~~~~ 453 (757)
+||+.||++|.| .|.+||.. + ++ .+++-.|.. .++|- +..... ...
T Consensus 98 ~~~~~v~~~L~D~~~R~~WD~~----~-----~~---------------~~vle~id~----~~ivY--~~~~p~--~~~ 145 (258)
T 3fo5_A 98 VDAAQAFLLLSDLRQRPEWDKH----Y-----RS---------------VELVQQVDE----DDAIY--HVTSPA--LGG 145 (258)
T ss_dssp SCHHHHHHHHHCGGGGGGTCTT----C-----CE---------------EEEEEEEET----TEEEE--EEEECC--CTT
T ss_pred CCHHHHHHHHhCchhHhHhhhh----c-----cE---------------EEEEEEcCC----CeEEE--EEecCC--ccC
Confidence 999999999987 79999974 1 11 344444422 23443 332211 111
Q ss_pred cccccceEEEeeecCCCCCCCCceeEEE-eecccCC----CCCCC--CcccCceEEecC
Q 004383 454 VALARDMYLLQLCSGIDENTVGACAQLV-FAPIDES----FADDA--PLLASGFRVIPL 505 (757)
Q Consensus 454 ~~~~~~~llLQe~~~~D~~a~GscS~vV-yAPVD~~----ds~~v--pLLPSGF~IlP~ 505 (757)
.+-+||..+|.-. -.+ ...|. .++| +-.|+-. -+.+| ..+|+||.|-|+
T Consensus 146 ~v~~RDFV~lr~~-r~~-~~~G~-~yvi~~~SV~hp~~Pp~~g~VR~~~~~sg~~I~P~ 201 (258)
T 3fo5_A 146 HTKPQDFVILASR-RKP-CDNGD-PYVIALRSVTLPTHRETPEYRRGETLCSGFCLWRE 201 (258)
T ss_dssp CSSCEEEEEEEEE-ECC-SSTTC-CEEEEEEEEECTTSCCCTTSEECCCSSEEEEEEEE
T ss_pred CCCCCEEEEEEEE-Eec-cCCCC-EEEEEEEeccCCCCCCCCCCEEEEEcCcEEEEEEC
Confidence 2345787777654 222 13453 2333 3334432 23333 689999999993
No 58
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=93.78 E-value=0.53 Score=40.62 Aligned_cols=98 Identities=13% Similarity=0.027 Sum_probs=63.2
Q ss_pred HHHH-hcCCCeEEecCCCCCCCCeeEcccHHHHHhhc------------cCHHHHhcccccccCChhcHHHHHHHHHHHH
Q 004383 641 LKQL-WHHSDAIMCCSLKTNASPVFTFANQAGLDMLE------------TTLVALQDIMLDKILDEAGRKILCTEFAKIM 707 (757)
Q Consensus 641 ~k~L-~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E------------~tw~el~~lpsr~sae~~~R~eR~~lL~~v~ 707 (757)
++.+ -+.+++|+..+.+ =..+|.|+||.+||+ ++-+++.+.+...-..... ....+ .
T Consensus 7 l~~il~~~~~gviv~D~~----g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~~~--~~~~~----~ 76 (121)
T 4hi4_A 7 IASALDNVSANVMIADND----LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKNPA--HQRHL----L 76 (121)
T ss_dssp HHHHHTTSSSEEEEEETT----CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSSHH--HHHHH----H
T ss_pred HHHHHhcCCccEEEEcCC----CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCCHH--HHHHH----H
Confidence 4444 4579999988755 489999999999997 6777888877655443221 11222 2
Q ss_pred HhccccCCCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 708 QQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 708 ~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
+..- .+....+...|+.|. ..+--+.|++|...|.-++|.+
T Consensus 77 ~~~~--~~~~~~~~~~~~~~~---~~~~pi~~~~g~~~g~v~~~~D 117 (121)
T 4hi4_A 77 ANLT--GVHKAELNLGGRRFS---LDVVPVFNDANARLGSAVQWTD 117 (121)
T ss_dssp HHCS--SCEEEEEEETTEEEE---EEEEEEECTTSCEEEEEEEEEE
T ss_pred hCcC--CCcEEEEEECCEEEE---EEEEEEECCCCCEEEEEEEEEE
Confidence 2221 122234444666653 3555677899999998888865
No 59
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=93.25 E-value=3.1 Score=39.63 Aligned_cols=54 Identities=22% Similarity=0.413 Sum_probs=40.6
Q ss_pred CCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 324 DGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 324 ~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
++|..... .++|+|..++..+ . ++..-++...+ +.||+.+|++|.| .|.+||..
T Consensus 3 ~~W~~~~~--~~gv~v~~~~~~~-----~----------~~~~~k~~~~v-~~s~~~v~~~l~D~~~~~~W~~~ 58 (189)
T 3qsz_A 3 DGWSLAKD--AEGIKVYVRNVEG-----S----------PLREFRGEVRL-KAAADDVVKVLRDANAFRQWMPD 58 (189)
T ss_dssp CCCEEEEE--ETTEEEEEECCTT-----C----------SSCEEEEEEEE-SSCHHHHHHHHHCGGGGGGTSTT
T ss_pred CCCEEEEc--CCCEEEEEEeCCC-----C----------CeEEEEEEEEE-ECCHHHHHHHHHhHHHhhhHHHh
Confidence 68987653 4689999988642 1 12345666777 6999999999997 99999974
No 60
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=91.38 E-value=0.25 Score=42.36 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=49.2
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcc
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGF 711 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~ 711 (757)
..|++|+..+. +=.++|+|+++.++|+++.+++.+.+.....++..+......+.++.+.|-
T Consensus 20 ~~~~~i~~~D~----~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T 3fg8_A 20 QGGLGFMALDE----DLRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGR 81 (118)
T ss_dssp CTTCEEEEECT----TCBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCC
T ss_pred hCCceEEEECC----CCeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCC
Confidence 36888887654 458999999999999999999999987766665555566677778887764
No 61
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=91.36 E-value=1.4 Score=42.71 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=42.5
Q ss_pred CCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 322 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 322 ~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
..++|..... .++|+|..+...+ . ++..-++...++++||+.||++|.| .|.+||..
T Consensus 26 ~~~~W~~~~~--~~~v~v~~~~~~~-----~----------~~~~~k~~~~i~~~~~~~v~~~l~d~~~r~~Wd~~ 84 (214)
T 1ln1_A 26 AGADWQLLVE--TSGISIYRLLDKK-----T----------GLYEYKVFGVLEDCSPTLLADIYMDSDYRKQWDQY 84 (214)
T ss_dssp TTTTCEEEEE--ETTEEEEEEEETT-----T----------TEEEEEEEEEETTSCHHHHHHHHHCHHHHHHHCTT
T ss_pred CCCCcEEEEE--CCCeEEEEeccCC-----C----------CcEEEEEEEEECCCCHHHHHHHHcCHHHHHHHHHH
Confidence 4568997764 3579998886541 1 2445677777844999999999997 89999973
No 62
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=90.67 E-value=11 Score=37.21 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=37.5
Q ss_pred CCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEEEEEEeeccccCChHHHH-HHHhh--hhcccccc
Q 004383 323 DDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVLCAKASMLLQNVPPALLV-RFLRE--HRSEWADY 395 (757)
Q Consensus 323 ~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VLcA~tS~~L~pvpP~~lf-~FLRd--~RseWd~~ 395 (757)
.++|..... ..++++|..+...+ .|.+. ++...+ ++||+.|| +++.| .|.+||..
T Consensus 41 ~~~W~~~~~-~~~g~~vy~~~~~~--------------~g~~~--k~~~~v-~~~~~~v~~~~~~d~~~r~~Wd~~ 98 (229)
T 1em2_A 41 EENWKFEKN-NEYGDTVYTIEVPF--------------HGKTF--ILKTFL-PCPAELVYQEVILQPERMVLWNKT 98 (229)
T ss_dssp GGGCEEEEE-CTTCCEEEEEEETT--------------TEEEE--EEEEEE-SSCHHHHHHHTTTCHHHHTTTCTT
T ss_pred CCCCEEEEe-cCCCCEEEEEecCC--------------CCceE--EEEEEe-cCCHHHHHHHHHhCccchhhcccc
Confidence 468987643 23568887776531 12333 455556 89999999 88876 89999974
No 63
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=90.40 E-value=1.1 Score=47.53 Aligned_cols=91 Identities=7% Similarity=-0.053 Sum_probs=68.3
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeEEEcceEEeEeec
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLD 739 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v~D 739 (757)
.|=.|+|.|.+..++++|+-+||.+.+...-.-|.++..-...+.+++++|-.....==.+.+.|.-+|++- ..--+.|
T Consensus 259 ~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv~~-~~~~v~~ 337 (361)
T 4f3l_A 259 LEWKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWLQT-HYYITYH 337 (361)
T ss_dssp TTSBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEEEE-EEEEEEC
T ss_pred CCceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEEEE-EEEEEEc
Confidence 366899999999999999999999988877777888887777888998888653322224578898888853 3334456
Q ss_pred C-CCCeeEEEEEe
Q 004383 740 D-DDSNHCLAFMF 751 (757)
Q Consensus 740 ~-~g~~~GqAa~F 751 (757)
+ +|...+.-.+.
T Consensus 338 ~~~g~~~~iv~~~ 350 (361)
T 4f3l_A 338 QWNSRPEFIVCTH 350 (361)
T ss_dssp TTTCCEEEEEEEE
T ss_pred CCCCCeeEEEEEE
Confidence 5 68877765543
No 64
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=87.75 E-value=2.5 Score=41.72 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=64.3
Q ss_pred HhhCCCCCCCCCCChHHHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhh------------ccCHHHHhcccccc
Q 004383 623 IHTGGELLRADSLTGDALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDML------------ETTLVALQDIMLDK 689 (757)
Q Consensus 623 ~~~G~~L~~~~~~~~~~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~------------E~tw~el~~lpsr~ 689 (757)
+|....|++-.. ....++.+.. .+++|+..+.+ =..+|+|+++.+|| +++-+++.+-+.+.
T Consensus 8 ~~~~~~~~~~~~--e~~~l~~iLd~~~~~vii~D~~----g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~ 81 (233)
T 3vol_A 8 HHHSSGLVPRGS--HMARIKSALDNVSANVMIADND----LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDV 81 (233)
T ss_dssp ----------CT--HHHHHHHHHTTSSSEEEEEETT----SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGG
T ss_pred ccccccCCchHH--HHHHHHHHHhcCCCcEEEECCC----CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHH
Confidence 334445665422 2334455554 58998887654 58999999999999 57777777777655
Q ss_pred cCChhcHHHHHHHHHHHHHhccccCCCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 690 ILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 690 sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
-.+.+. ....+++.. + + .....+...|+.| ...+=-+.|++|.+.|.-..|.+
T Consensus 82 ~~~~~~--~~~~~~~~~-~-~----~~~~~~~~~g~~~---~~~~~Pi~d~~G~~~g~v~~~~D 134 (233)
T 3vol_A 82 FHKNPA--HQRHLLANL-T-G----VHKAELNLGGRRF---SLDVVPVFNDANERLGSAVQWTD 134 (233)
T ss_dssp GSSSHH--HHHHHHHTC-C-S----CEEEEEEETTEEE---EEEEEEEECTTCCEEEEEEEEEE
T ss_pred HcCCHH--HHHHHHHhc-c-c----ceeEEEEECCEEE---EEEEEEEECCCCCEEEEEEEEeh
Confidence 443221 111222221 1 1 1223344456544 45677788999999998888765
No 65
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=87.64 E-value=15 Score=34.40 Aligned_cols=143 Identities=9% Similarity=0.115 Sum_probs=82.5
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
..+.+|.-.+.++-+.+.|.++|...+|......... +|....+.+++.+-- ...|+-|..||...-++. -+..
T Consensus 10 ~~s~~I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~---~~~~~~~~a~l~vg~--~~~~~~~~s~~~~~~~~~-~I~~ 83 (161)
T 3p9v_A 10 NRDLEIPASYDEVFDLLADVPKSASHFPKVDKLVDLG---NNAYRWEMEKVGVDK--HAIQSVYACTYHADKEAG-KITW 83 (161)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEE---TTEEEEEECCBSSGG--GCBCCEEEEEEEEETTTT-EEEE
T ss_pred EEEEEEcCCHHHHHHHHhChhhhHhhCCCeEEEEEcC---CCceEEEEEEEeeee--EEEEEEEEEEEEEcCCCC-EEEE
Confidence 4567788899999999999999999999876664332 233333334444322 234888999998654333 3222
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHH-HH
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM-RH 280 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaL-r~ 280 (757)
+ +++ +| |.+ .+-.-+-++|.++|.|+|+|.-..|.. ..++.++..+...-+-=++++.+.+. +.
T Consensus 84 ~-~~~----g~-------~~~--~l~g~w~f~p~~~g~t~V~~~~~~e~~-~pl~~ll~~~~~~~~~~~~~~~v~af~~r 148 (161)
T 3p9v_A 84 S-PIK----GE-------GNG--VVSGSWTLSAKGDNATAVKFQTSAELT-VPLPSLLKLAISPVIKHEFNSLVDTYMAN 148 (161)
T ss_dssp E-ECT----TS-------TTE--EEEEEEEEEESSSSCEEEEEEEEEEEE-ECSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-Eec----Cc-------cce--eEEEEEEEEECCCCeEEEEEEEEEEEc-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 222 22 110 111234467788888999999888876 12344444333111111445555555 34
Q ss_pred Hhhhc
Q 004383 281 IRQIA 285 (757)
Q Consensus 281 ~erla 285 (757)
++++-
T Consensus 149 a~~~~ 153 (161)
T 3p9v_A 149 LKKAF 153 (161)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 54443
No 66
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=87.46 E-value=0.85 Score=37.24 Aligned_cols=98 Identities=8% Similarity=0.049 Sum_probs=59.5
Q ss_pred HHHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhcc---CHHHHhcccccccCChhcHHHHHHHHHHHHHhccccC
Q 004383 639 ALLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLET---TLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL 714 (757)
Q Consensus 639 ~~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~---tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~ 714 (757)
..++.+++ .|++|+..+.+ =.++|+|+++.++|++ +-+++.+.+......+.. +.++.+.|-...
T Consensus 15 ~~~~~il~~~~~~i~~~d~~----g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~~~ 83 (118)
T 2w0n_A 15 EQRQAMLQSIKEGVVAVDDR----GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTPRR 83 (118)
T ss_dssp HHHHHHHHCCCCCCEEEBTT----TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCCCC
T ss_pred HHHHHHHhhccccEEEECCC----CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCceec
Confidence 33455554 78888777644 4789999999999997 788888877665554332 445555554321
Q ss_pred CCeeEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 715 PGGMCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 715 y~GvRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
...+...|+.+.+. +-.+.| +|...|...+|.+
T Consensus 84 --~~~~~~~~~~~~~~---~~p~~~-~g~~~g~v~~~~D 116 (118)
T 2w0n_A 84 --DEEITIKDRLLLIN---TVPVRS-NGVIIGAISTFRD 116 (118)
T ss_dssp --CCCEESSSCEECCC---EECCCC-SSCCCCEEECCCC
T ss_pred --cEEEEECCEEEEEe---eceeee-CCEEEEEEEEEEe
Confidence 22233456544332 222334 7777776666654
No 67
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=87.43 E-value=9.1 Score=36.07 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=83.1
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
..+-+|.-.+.++-+.+-|.++|-+.+|-+.-..++..+.++ +.+++.+.- -..++-|.-|+...-++.. |.
T Consensus 8 ~~si~I~ap~~~V~~~v~D~~~~p~~~P~~~~~~v~~~~~~~----~~~~~~~~~--~G~~~~~~s~~~~~~~~~~--i~ 79 (172)
T 3tfz_A 8 EHTVTVAAPADLVWEVLADVLGYADIFPPTEKVEILEEGQGY----QVVRLHVDV--AGEINTWTSRRDLDPARRV--IA 79 (172)
T ss_dssp EEEEEESSCHHHHHHHHHCGGGHHHHCSSEEEEEEEEEETTE----EEEEEEEEE--TTEEEEEEEEEEEETTTTE--EE
T ss_pred EEEEEeCCCHHHHHHHHHhHHHHHhhCcccceEEEEecCCCE----EEEEEEEec--CCEEEEEEEEEEEeCCCCE--EE
Confidence 456678888999999999999999999988666666543333 122333211 1234444445443333322 11
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccce-eeeecCCCceEEEEEEeeeecCCcccccchhhhchhH-------HH--HH
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGF-LIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSK-------IL--AQ 271 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGc-LIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~-------af--ga 271 (757)
-.+++. ++| |.. + .|. -+.|.++|+|+|+|.-++++....+..++.++..-.. ++ ..
T Consensus 80 ~~~~~~--~gp-------f~~---~-~g~w~f~~~~~~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~l~~~~ 146 (172)
T 3tfz_A 80 YRQLET--API-------VGH---M-SGEWRAFTLDAERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEAVVERNS 146 (172)
T ss_dssp EEEEEC--CTT-------EEE---E-EEEEEEEEEETTEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHHHHHHHH
T ss_pred EEEeeC--CCC-------hhh---c-EEEEEEEECCCCcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHHHHhccc
Confidence 122221 111 110 1 122 2567777899999999999988888888887654321 11 22
Q ss_pred HHHHHHHH-HHhhhccc
Q 004383 272 KMTMAAMR-HIRQIAQE 287 (757)
Q Consensus 272 rrw~aaLr-~~erla~~ 287 (757)
+..++.|+ ++|+.+.+
T Consensus 147 ~~~L~~lk~~aE~~~~~ 163 (172)
T 3tfz_A 147 VADLNAVLGEAERRVRA 163 (172)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34555563 56655443
No 68
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=86.64 E-value=1.7 Score=38.17 Aligned_cols=78 Identities=12% Similarity=0.068 Sum_probs=51.4
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE-EccCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR-iSs~G 724 (757)
+.+++|+..+. +=.|.|.|.++.++|+|+-+|+.+.+..--..|.+++...+.+. +++-. ...-.| +.+.|
T Consensus 7 ~~~d~i~v~d~----~G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~-~~~e~r~~~kdG 78 (111)
T 2vlg_A 7 TKTDIHAVLAS----NGRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHL-MPCTFRFIKKDH 78 (111)
T ss_dssp --CCEEEEECT----TSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCS-SCEEEEEECTTS
T ss_pred cCCCEEEEEcC----CCeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCC-ccEEEEEEcCCC
Confidence 46777777653 44899999999999999999999987654455666665544432 22211 111234 36889
Q ss_pred CeEEEcc
Q 004383 725 RAVSYEQ 731 (757)
Q Consensus 725 Rrf~ie~ 731 (757)
+.++++-
T Consensus 79 ~~~wve~ 85 (111)
T 2vlg_A 79 TIVWVEA 85 (111)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 9888864
No 69
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=84.73 E-value=1.6 Score=50.21 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=73.4
Q ss_pred HHhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcc
Q 004383 643 QLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS 722 (757)
Q Consensus 643 ~L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs 722 (757)
.+-.+++.|+..+. +-+++|.|++..+|++++-+|+.+.+......+..+......++. ..+|-..-..=.-..+
T Consensus 523 lle~a~~~i~~~D~----~grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~~~~i~~~-l~~g~~~~~E~~~~~~ 597 (635)
T 4eho_A 523 QVHASMQPVLITDA----EGRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDFLRNVAEL-IDHGRGWRGEVLLRGA 597 (635)
T ss_dssp HHHHCSSCCEEEET----TCCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHHHHHHHHH-HHHCCCBCCCCEECCS
T ss_pred HHHhCCCcEEEECC----CCeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHHHHHHHHH-HHcCCcEEEEEEEEcc
Confidence 34457888777654 467999999999999999999999987666555555544445544 4445332222223457
Q ss_pred CCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 723 MGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 723 ~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.|+.++++--. =-+.|++|++.|..++|.+
T Consensus 598 dG~~~~~~~~~-~pv~d~~G~v~g~v~i~~D 627 (635)
T 4eho_A 598 GNRPLPLAVRA-DPVTRTEDQSLGFVLIFSD 627 (635)
T ss_dssp SSSCEECCCCE-EEECSTTSSCCEEEECCCC
T ss_pred CCcEEEEEEEE-EEEECCCCCEEEEEEEEEe
Confidence 88888875432 3578999999999988865
No 70
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=82.25 E-value=1.6 Score=40.39 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=55.2
Q ss_pred HHHHHhc-CCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCee
Q 004383 640 LLKQLWH-HSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGM 718 (757)
Q Consensus 640 ~~k~L~~-~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~Gv 718 (757)
.++.++. .+++|+..+.+ =.+.|+|++|.++|+++-+++.+.+...-..+.. +.++.++|-. ...+.
T Consensus 81 ~l~~il~~~~~gvi~~D~~----g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~-~~~~~ 148 (190)
T 2jhe_A 81 ALSALLEALPEPVLSVDMK----SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFN-------FLRWLESEPQ-DSHNE 148 (190)
T ss_dssp HHHHHHHHCSSCEEEECTT----CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC-------HHHHHHTCCC-SCEEE
T ss_pred HHHHHHHhCCCcEEEEcCC----CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC-------HHHHHhcCCC-CCcce
Confidence 3455544 78888887754 4799999999999999999999988776554432 2234444421 11223
Q ss_pred EEccCCCeEEEcceEEeEeecCCCC
Q 004383 719 CVSSMGRAVSYEQAVAWKVLDDDDS 743 (757)
Q Consensus 719 RiSs~GRrf~ie~A~vW~v~D~~g~ 743 (757)
.+...|+.|.+. +-.+.+++|.
T Consensus 149 ~~~~~g~~~~~~---~~pi~~~~~~ 170 (190)
T 2jhe_A 149 HVVINGQNFLME---ITPVYLQDEN 170 (190)
T ss_dssp EEEETTEEEEEE---EEEETTTTEE
T ss_pred EEEECCeEEEEE---EEEEEecCCC
Confidence 333467665543 2334454444
No 71
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=82.24 E-value=9.8 Score=34.48 Aligned_cols=138 Identities=9% Similarity=0.094 Sum_probs=76.9
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCC--CCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGN--GGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLV 199 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~--~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wv 199 (757)
+.+..|...+.++-+.+.|.++|-+.+|..+-+.++..+. +|.- +.+.+.+ -.-+.++-|..|++..-.+ ..
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~--~~~~~~~--~~~~~~~~~~~~v~~~~~~--~~ 78 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVST--VDAEAQV--GFSFLREKFATRVRRDKDA--RS 78 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEE--EEEEEEC--STTSSCCEEEEEEEEETTT--CE
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCce--EEEEEEE--EecceeEEEEEEEEEcCCC--cE
Confidence 4566778889999999999999888877664444443221 1121 2233333 2235566677888764333 22
Q ss_pred EEEeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHH-
Q 004383 200 VCERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAM- 278 (757)
Q Consensus 200 VvDvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaL- 278 (757)
|.-.++++ + ...+...+ -++|.++| |+|++.-++|+.. .++..+...-+.-.+++.+.++
T Consensus 79 i~~~~~~G----~----f~~~~g~w------~f~~~~~g-t~v~~~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~f~ 139 (148)
T 1t17_A 79 IDVSLLYG----P----FKRLNNGW------RFMPEGDA-TRVEFVIEFAFKS----ALLDAMLAANVDRAAGKLIACFE 139 (148)
T ss_dssp EEEEESST----T----SSCEEEEE------EEEEETTE-EEEEEEEEECCSC----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC----C----hhccEEEE------EEEECCCC-eEEEEEEEEEECc----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334442 2 11122222 24677777 9999988887642 2334444222222556666766
Q ss_pred HHHhhh
Q 004383 279 RHIRQI 284 (757)
Q Consensus 279 r~~erl 284 (757)
+.++++
T Consensus 140 ~r~~~~ 145 (148)
T 1t17_A 140 ARAQQL 145 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 355543
No 72
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=80.39 E-value=8.9 Score=33.50 Aligned_cols=106 Identities=8% Similarity=-0.034 Sum_probs=66.9
Q ss_pred HHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhccc--ccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 641 LKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIM--LDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 641 ~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lp--sr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
++.+. .+++.|.-.+.. -..+|.|.+..++|+++-.++.+-. +.....|.+|+.-...+.++.+.|-.+.. =
T Consensus 11 l~~~~~~~~~g~w~~d~~----~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~~~-e 85 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNPK----TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTYDV-E 85 (142)
T ss_dssp HHHHHHHTTCEEEEECTT----TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCEEE-E
T ss_pred HHHHHHhCCcEEEEEEcC----CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCceEE-E
Confidence 44443 366666554443 3457899999999999998876532 23344577777777777777776633221 1
Q ss_pred eE-EccCCCeEEEcceEEeEeecCCCCeeEEEEEec
Q 004383 718 MC-VSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFM 752 (757)
Q Consensus 718 vR-iSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~ 752 (757)
.| ..+.|...+++. ..--+.|++|...+...++.
T Consensus 86 ~r~~~~~G~~~w~~~-~~~~~~d~~g~~~~~~G~~~ 120 (142)
T 3mr0_A 86 YRVRTRSGDFRWIQS-RGQALWNSAGEPYRMVGWIM 120 (142)
T ss_dssp EEEECTTSCEEEEEE-EEEEEECTTSCEEEEEEEEE
T ss_pred EEEECCCCCEEEEEE-EEEEEECCCCCEEEEEEEEE
Confidence 23 357788777743 33346799999877665543
No 73
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=78.97 E-value=40 Score=31.80 Aligned_cols=112 Identities=8% Similarity=0.081 Sum_probs=66.4
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
..+.+|.-.|.++-+++.|..+|-+.+|-..-..+++.+.++ .. ....|++-.- -.++-|+.|+... .++.-+
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~yP~~~p~~~~~~vl~~~~~~-~~-~rl~~~~~~~--G~~~~~ts~~~~d-~~~~~I-- 78 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEKWPGLFSEYASVEVLGRDDDK-VT-FRLTMHPDAD--GKVWSWVSERVAD-PVTRTV-- 78 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCSSEEEEEEEEECSSE-EE-EEEEECCCTT--SCCCEEEEEEEEE-TTTTEE--
T ss_pred EEEEEecCCHHHHHHHHHhHHHhhhhhhCceEEEEEecCCCE-EE-EEEEEEeccC--ceEEEEEEEEEEc-CCCCEE--
Confidence 456778888999999999999999999987666666654222 11 1111112111 2355556677543 333232
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCC
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAW 253 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~ 253 (757)
+..+ ..++| |- .+=..+-..|.++ +|+|+|.-+.++.+.
T Consensus 79 ~~~~--~~~gP-------f~---~l~g~W~f~p~~~-gt~V~~~~df~~~~~ 117 (159)
T 3tl1_A 79 RAQR--VETGP-------FQ---YMNIVWEYAETAE-GTVMRWTQDFAMKPD 117 (159)
T ss_dssp EEEE--SSCTT-------EE---EEEEEEEEEEETT-EEEEEEEEEEEECTT
T ss_pred EEEE--ccCCC-------hh---hccCEEEEEECCC-CEEEEEEEEEEecCC
Confidence 2221 11122 21 2334455677777 599999999999765
No 74
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=76.26 E-value=12 Score=40.04 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=61.9
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC----CeeE-EccCCCeEEEcceEE
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP----GGMC-VSSMGRAVSYEQAVA 734 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y----~GvR-iSs~GRrf~ie~A~v 734 (757)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++....+.+.+++++|-..+. .=.| +.+.|.-+|++ +-
T Consensus 162 ~dG~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kdG~~vWle--t~ 239 (339)
T 3rty_A 162 ATGIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLE--TE 239 (339)
T ss_dssp TTCBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTTSCEEEEE--EE
T ss_pred CCCeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccCCCEEEEE--EE
Confidence 35689999999999999999999999887777788888888889999988764320 1133 47889988886 34
Q ss_pred eEe-ecCCC
Q 004383 735 WKV-LDDDD 742 (757)
Q Consensus 735 W~v-~D~~g 742 (757)
|++ .|..+
T Consensus 240 ~~~~~np~s 248 (339)
T 3rty_A 240 WTSFVNPWS 248 (339)
T ss_dssp EEEEECTTT
T ss_pred EEEEECCCC
Confidence 554 56543
No 75
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=75.29 E-value=5.7 Score=40.21 Aligned_cols=95 Identities=8% Similarity=-0.063 Sum_probs=56.9
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeEEcc-CC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSS-MG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs-~G 724 (757)
+.|++|+..+.+ =.++|+|+++.++|+++.+++.+.+...-.++. +....+.++.+.|-.. -++.-. .+
T Consensus 16 ~~~~~i~~~d~~----g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~ 85 (349)
T 3a0r_A 16 SLETAIITLSKD----GRITEWNKKAEQLFGLKKENVLGRRLKDLPDFE---EIGSVAESVFENKEPV---FLNFYKFGE 85 (349)
T ss_dssp GSSSEEEEEESS----SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTT---HHHHHHHHHHHHCCCC---EEECCCBTT
T ss_pred hhcCeEEEECCC----CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChh---HHHHHHHHHHhcCCce---eecccccCc
Confidence 378888887644 589999999999999999999998776543222 2334455555544211 111111 23
Q ss_pred CeEEEcceEEeEeecCCCCe-eEEEEEecC
Q 004383 725 RAVSYEQAVAWKVLDDDDSN-HCLAFMFMN 753 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g~~-~GqAa~F~n 753 (757)
|.|.+ .+-.+.|++|.. .|...++.+
T Consensus 86 ~~~~~---~~~~~~~~~~~~~~g~~~~~~D 112 (349)
T 3a0r_A 86 RYFNI---RFSPFRNAKTQLLEGVIITIDD 112 (349)
T ss_dssp BCCEE---EEEEECCTTTTSSCEEEEEEEC
T ss_pred eEEEE---EEEEEEcCCCceeeEEEEEEEe
Confidence 33332 334455666654 576666654
No 76
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=72.82 E-value=67 Score=30.59 Aligned_cols=144 Identities=14% Similarity=0.202 Sum_probs=74.5
Q ss_pred eeeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEEEEeeeeeCCCcEEEE
Q 004383 122 RACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWLLRYSTSLEDGSLVVC 201 (757)
Q Consensus 122 Ra~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~fLRYckql~~G~wvVv 201 (757)
..+.+|.-.+.++-+.+.|.++|-+.+|.+.-..++..+.++ +. +...|++..--. .++|..-|.. -.++.-+..
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~~p~w~p~~~~~~~~~~~~~~-~~-~~l~~~~~~~G~-~~~~ts~~~~--d~~~~~I~~ 80 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEAWPELFSEYAEAEILRQDGDG-FD-FRLKTRPDANGR-VWEWVSHRVP--DKGSRTVRA 80 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGGHHHHCTTEEEEEEEEEETTE-EE-EEEEECCCTTSC-CCEEEEEEEE--EGGGTEEEE
T ss_pred EEEEEecCCHHHHHHHHHhhhHHHHHHhheeEEEEEecCCCE-EE-EEEEEEecCCCe-EEEEEEEEEE--cCCCcEEEE
Confidence 456677778889999999999999999887666666543221 11 111222222111 2233332321 122222211
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhhchhHHHHHHHHHHHHH-H
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLYESSKILAQKMTMAAMR-H 280 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~~Sg~afgarrw~aaLr-~ 280 (757)
.. +. ++| |. .+=...-+.|.++| |+|+|.-+.++++. .| +-.+.+...+.=.-+..+++|+ .
T Consensus 81 ~~-l~---~gP-------f~---~~~g~W~f~p~~~g-t~V~~~~df~~~~~-~p-~~~~~~~~av~~~~~~~L~~LK~~ 143 (169)
T 3tvq_A 81 HR-VE---TGP-------FA---YMNLHWTYRAVAGG-TEMRWVQEFDMKPG-AP-FDNAHMTAHLNTTTRANMERIKKI 143 (169)
T ss_dssp EE-SS---CTT-------EE---EEEEEEEEEEETTE-EEEEEEEEEEECTT-CS-SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE-cC---CCC-------hh---heeeEEEEEECCCC-EEEEEEEEEEecCC-Cc-ccHHHHHHHHHhhHHHHHHHHHHH
Confidence 11 11 112 21 23335567888888 99999999998754 22 1111111111112234566774 6
Q ss_pred Hhhhccc
Q 004383 281 IRQIAQE 287 (757)
Q Consensus 281 ~erla~~ 287 (757)
+|+.+.+
T Consensus 144 aE~~~~~ 150 (169)
T 3tvq_A 144 IEDRHRE 150 (169)
T ss_dssp HHHHHHH
T ss_pred Hhhhhhh
Confidence 7766653
No 77
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=66.10 E-value=21 Score=33.06 Aligned_cols=105 Identities=10% Similarity=0.023 Sum_probs=64.7
Q ss_pred HHHHHHh-cCCCeEEecCCCCCCCCeeEcccHH---HHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccC
Q 004383 639 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQA---GLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYL 714 (757)
Q Consensus 639 ~~~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~a---AL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~ 714 (757)
+.+++++ +-|+.|+..+. +=.++|.|++ +-++|.. -++..+-+..--.+ ....+....+-++.+.|-..-
T Consensus 19 ~~l~~IL~~~~~gI~~vD~----~g~I~~~N~a~~~~~~i~g~-~~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNK----DDIFQYYNDSVPAAEMVFKR-TPSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHSSSEEEEEET----TSBEEEECCCSCGGGCSSCC-CGGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHhCCCceEEEcC----CCeEEEEeCCCchhhhhcCC-CHHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCccE
Confidence 3455555 47888877654 4589999999 9999994 47888877644433 333333333444555565332
Q ss_pred CCeeEEccC--CCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 715 PGGMCVSSM--GRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 715 y~GvRiSs~--GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
.=+.+... |+.+.+ ...-|.|++|++.|.-.+|.+
T Consensus 93 -~~~~~~~~~~~~~v~v---~~~Pi~d~~G~~~G~vev~~D 129 (151)
T 2qkp_A 93 -VNMWFQSERLGKFVYV---TYAAVRDQAGDFQGVLEYVQD 129 (151)
T ss_dssp -EEEEEEETTTTEEEEE---EEEEEECTTCCEEEEEEEEEE
T ss_pred -EEEEEecCCCCeEEEE---EEEEEECCCCCEEEEEEEEEE
Confidence 12333323 555544 334556999999998888854
No 78
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=65.80 E-value=1.8 Score=37.48 Aligned_cols=29 Identities=38% Similarity=0.476 Sum_probs=25.4
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhcccc
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQLHS 32 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~~~ 32 (757)
-|-+||++|.++|.+|--|..+||+.|-+
T Consensus 47 ~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 47 ELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999998753
No 79
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=65.65 E-value=6.6 Score=39.45 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=40.0
Q ss_pred CCCCccccccCCCcceEEEeecCCCCCCCCCCccCCCCCCceEE-EEEEeeccccCChHHHHHHHhh--hhcccccc
Q 004383 322 LDDGWSLLSSDGGEDVTVAINSSPNKFLGSQYNWSMLPAFGGVL-CAKASMLLQNVPPALLVRFLRE--HRSEWADY 395 (757)
Q Consensus 322 ~~~~W~~l~~~g~edVrv~~r~s~~~~~~~~~~~~g~~~~g~VL-cA~tS~~L~pvpP~~lf~FLRd--~RseWd~~ 395 (757)
.+++|..... .++|+|..++..+ . |.++ .-++..-+.+++|+.||++|.| .|.+||..
T Consensus 45 ~~~~W~~~~~--~~gv~vy~~~~~~---~-----------g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~r~~Wd~~ 105 (255)
T 2e3n_A 45 GDANWQLVVE--EGEMKVYRREVEE---N-----------GIVLDPLKATHAVKGVTGHEVCNYFWNVDVRNDWETT 105 (255)
T ss_dssp TCTTEEEEEE--ETTEEEEEECCEE---T-----------TEECCCEEEEEEEETCCHHHHHHHHHCGGGHHHHCCS
T ss_pred CCCCcEEEEe--CCCEEEEEEEcCC---C-----------CceeeeEEEEEEEcCCCHHHHHHHHhCcchHhhhhhh
Confidence 3468987753 4679999988652 1 1111 1233445557999999999997 89999974
No 80
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=63.21 E-value=26 Score=37.51 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=63.5
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCeeE-EccCCCeEEEcceEEeEe-
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGGMC-VSSMGRAVSYEQAVAWKV- 737 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~GvR-iSs~GRrf~ie~A~vW~v- 737 (757)
.|=.|+|.|.++.++++|+-+||.+.++---.-|.++..-...+.++++.|--....=.| ..+.|.-+|++- -|++
T Consensus 286 ~dg~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv~~--~~~~~ 363 (387)
T 4f3l_B 286 IDGKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITLRS--RWFSF 363 (387)
T ss_dssp TTSBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEEEE--EEEEE
T ss_pred CCCEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEEEE--EEEEE
Confidence 356899999999999999999999988766667888877777777777654211111133 478899999863 3444
Q ss_pred ecC-CCCeeEEEEEe
Q 004383 738 LDD-DDSNHCLAFMF 751 (757)
Q Consensus 738 ~D~-~g~~~GqAa~F 751 (757)
.|+ +|...+.-.+.
T Consensus 364 ~~~~~g~~~~ivg~~ 378 (387)
T 4f3l_B 364 MNPWTKEVEYIVSTN 378 (387)
T ss_dssp EETTTTEEEEEEEEE
T ss_pred ECCCCCCEEEEEEEE
Confidence 455 57777665443
No 81
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=62.93 E-value=29 Score=36.95 Aligned_cols=104 Identities=9% Similarity=0.029 Sum_probs=70.0
Q ss_pred HHHHHHh-cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCCCe
Q 004383 639 ALLKQLW-HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLPGG 717 (757)
Q Consensus 639 ~~~k~L~-~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y~G 717 (757)
+.++.++ +.+++|+..+.. =+++|.|++ .++| ++-.++.+-+...-.++.... ....+.++.+.|-.. ..-
T Consensus 239 ~~l~~IL~~l~dgIivvD~~----g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~~~~-~~~~l~~~l~~g~~~-~~~ 310 (369)
T 3cax_A 239 EELKAIFEALPVDVTFIDKD----DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPKSVY-VVNKILKAFKEGRKK-EAT 310 (369)
T ss_dssp HHHHHHHHHSSSEEEEECTT----SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGGGHH-HHHHHHHHHHHTSCS-CEE
T ss_pred HHHHHHHHhCCCcEEEECCC----CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChhhHH-HHHHHHHHHHcCCce-EEE
Confidence 3455555 488898887754 489999999 9999 999999998876655443333 333344556666432 223
Q ss_pred eEEccCCCeEEEcceEEeEeecCCCCeeEEEEEecC
Q 004383 718 MCVSSMGRAVSYEQAVAWKVLDDDDSNHCLAFMFMN 753 (757)
Q Consensus 718 vRiSs~GRrf~ie~A~vW~v~D~~g~~~GqAa~F~n 753 (757)
+.+...|+.+.+. +--|.|++|.+.|...+|.+
T Consensus 311 ~~~~~~g~~v~v~---~~PI~d~~G~~~G~v~v~~D 343 (369)
T 3cax_A 311 FWLRLREKYVYIK---YVPLFNEKGEYIGTLEMTMD 343 (369)
T ss_dssp EEEEETTEEEEEE---EEEEECTTSCEEEEEEEEEE
T ss_pred EEEeeCCEEEEEE---EEEEECCCCCEEEEEEEEEc
Confidence 4455567666553 33567999999998888865
No 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=61.29 E-value=2.1 Score=37.76 Aligned_cols=29 Identities=38% Similarity=0.476 Sum_probs=26.2
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhcccc
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQLHS 32 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~~~ 32 (757)
-|-+||++|.++|.+|--|.++||+-|-.
T Consensus 47 ~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 47 ELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999999999999998864
No 83
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.33 E-value=2.8 Score=34.25 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=21.3
Q ss_pred chhhchhhhhhhhhhhhhcchhhhccc
Q 004383 5 LMEENDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 5 l~een~rl~k~~~ql~~en~~~r~~~~ 31 (757)
|-.||+.|.+++++|--|+..|||+|.
T Consensus 34 L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 34 LKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999874
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=55.00 E-value=3.2 Score=33.81 Aligned_cols=27 Identities=33% Similarity=0.302 Sum_probs=23.6
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhcc
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQL 30 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~ 30 (757)
-|-+||+.|++++++|--|+..||++|
T Consensus 33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 33 DLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366889999999999999999999886
No 85
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=54.53 E-value=4 Score=37.46 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=19.8
Q ss_pred hhhhhhhhhhhhhcchhhhccccC
Q 004383 10 DRLQKQVSHLVYENGYMRQQLHSA 33 (757)
Q Consensus 10 ~rl~k~~~ql~~en~~~r~~~~~~ 33 (757)
|.|++++.+|-+||..||+||.+.
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~ 34 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSS 34 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999999853
No 86
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=50.08 E-value=46 Score=30.77 Aligned_cols=95 Identities=5% Similarity=-0.127 Sum_probs=69.9
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lps-r~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~G 724 (757)
..|+.|+.-+ .+=...|-|+++.++.+++-++..+-+. +..++-....+=+..|.+..++|-...--+-.++..|
T Consensus 25 ~l~~Gii~lD----~~g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~l~~~~~~v~~~~~ 100 (125)
T 1nwz_A 25 GLAFGAIQLD----GDGNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGNLNTMFEYTFDYQM 100 (125)
T ss_dssp TCSSEEEEEE----TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTCCEEEEEEEECTTS
T ss_pred ccCceEEEEC----CCCEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCC
Confidence 3677776543 3457999999999999999999999888 4456555566655566666669998877788889999
Q ss_pred CeEEEcceEEeEeecCCCCeeEE
Q 004383 725 RAVSYEQAVAWKVLDDDDSNHCL 747 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g~~~Gq 747 (757)
+++..+=.. +.+++|...+.
T Consensus 101 ~p~~v~i~l---~~~~~~~~~~i 120 (125)
T 1nwz_A 101 TPTKVKVHM---KKALSGDSYWV 120 (125)
T ss_dssp CCEEEEEEE---EECSSSSEEEE
T ss_pred CEEEEEEEE---EEcCCCCEEEE
Confidence 988875433 34666665554
No 87
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=44.72 E-value=26 Score=32.74 Aligned_cols=95 Identities=6% Similarity=-0.088 Sum_probs=69.6
Q ss_pred cCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccc-cccCChhcHHHHHHHHHHHHHhccccCCCeeEEccCC
Q 004383 646 HHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIML-DKILDEAGRKILCTEFAKIMQQGFAYLPGGMCVSSMG 724 (757)
Q Consensus 646 ~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lps-r~sae~~~R~eR~~lL~~v~~qG~~~~y~GvRiSs~G 724 (757)
..++.|+.-+ .+=...|-|+++.++.+++-+++.+-.. +..+.-....+-+..|.+..++|-...-.+-.++..|
T Consensus 30 ~l~~GiivlD----~dg~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~l~~~~~yv~~~~~ 105 (129)
T 1mzu_A 30 ALPVGAIQVD----GSGVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGTLDARFDFVFDFQM 105 (129)
T ss_dssp GCSSEEEEEE----TTCBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSCCEEEEEEEEECSS
T ss_pred ccCceEEEEC----CCCeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCceeEEEEEEEcCCC
Confidence 3677766543 3456999999999999999999999888 4456555666655666666669998877788889999
Q ss_pred CeEEEcceEEeEeecCCCCeeEE
Q 004383 725 RAVSYEQAVAWKVLDDDDSNHCL 747 (757)
Q Consensus 725 Rrf~ie~A~vW~v~D~~g~~~Gq 747 (757)
+++.++=.. +.+++|...+.
T Consensus 106 ~p~~v~i~l---~~~~~~~~~~i 125 (129)
T 1mzu_A 106 APVRVQIRM---QNAGVPDRYWI 125 (129)
T ss_dssp CEEEEEEEE---EECSSTTEEEE
T ss_pred CEEEEEEEE---EEcCCCCEEEE
Confidence 988875333 33566665554
No 88
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=42.41 E-value=6.4 Score=31.46 Aligned_cols=23 Identities=48% Similarity=0.590 Sum_probs=21.5
Q ss_pred chhhhhhhhhhhhhcchhhhccc
Q 004383 9 NDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 9 n~rl~k~~~ql~~en~~~r~~~~ 31 (757)
-|.|-+||.-|-.||..||++|+
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~ 27 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELE 27 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH
Confidence 47899999999999999999998
No 89
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=41.34 E-value=45 Score=35.18 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=47.5
Q ss_pred hHHHHHHHhcCCC-eEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHH
Q 004383 637 GDALLKQLWHHSD-AIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAK 705 (757)
Q Consensus 637 ~~~~~k~L~~~~~-aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~ 705 (757)
.+++.+.+..+.+ +|+.- . .|-.|.|.|.+..++|+|+-+||++.+..--..|.+|.+-...|..
T Consensus 84 ~~~~~~~~l~a~~~~i~v~--~--~~G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 84 NEEFTQLMLEALDGFFLAI--M--TDGSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHHTTEEEEEE--E--TTSBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCceEEEE--c--CCccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 3455555555444 33333 2 3678999999999999999999999988777778887777666654
No 90
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=41.13 E-value=7 Score=32.17 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.5
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhcc
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQL 30 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~ 30 (757)
-|-+||+.|..++++|--||.+||+-|
T Consensus 34 ~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 34 ELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999865
No 91
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=41.06 E-value=33 Score=35.99 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=56.6
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhccccCC-CeeEE-ccCCCeEEEcceEEeEe
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAYLP-GGMCV-SSMGRAVSYEQAVAWKV 737 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~~y-~GvRi-Ss~GRrf~ie~A~vW~v 737 (757)
.|=.|+|.|.++..+++|+-+||++.+.---.-|.++....+.+.++++.|-.... .=.|+ .+.|.-+|++ +-|++
T Consensus 173 ~dG~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwve--t~~~~ 250 (309)
T 3gdi_A 173 PNCLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYITLD--TSWSS 250 (309)
T ss_dssp TTCBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEEEE--EEEEE
T ss_pred CCCeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEEEE--EEEEE
Confidence 36789999999999999999999998765555677888777888888885432110 12344 7888888886 45665
Q ss_pred e
Q 004383 738 L 738 (757)
Q Consensus 738 ~ 738 (757)
+
T Consensus 251 ~ 251 (309)
T 3gdi_A 251 F 251 (309)
T ss_dssp E
T ss_pred E
Confidence 4
No 92
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=38.90 E-value=1.4e+02 Score=31.52 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=58.9
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHh-ccccCCCeeEE-ccCCCeEEEcceEEeEe
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQ-GFAYLPGGMCV-SSMGRAVSYEQAVAWKV 737 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~q-G~~~~y~GvRi-Ss~GRrf~ie~A~vW~v 737 (757)
.|=.|+|.|.++..+++|+-+||++.+.---.-|.++....+.+.++++. |-.....=.|+ .+.|.-+|++- -|++
T Consensus 184 ~dG~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vwvet--~~~~ 261 (320)
T 4dj2_A 184 PSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDT--SWAG 261 (320)
T ss_dssp TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEEEEEC--EEEE
T ss_pred CCceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEEEEEE--EEEE
Confidence 36789999999999999999999998766556688888777888888774 43221112333 67788888863 4544
Q ss_pred -ecC-CCCeeE
Q 004383 738 -LDD-DDSNHC 746 (757)
Q Consensus 738 -~D~-~g~~~G 746 (757)
+|. .+...+
T Consensus 262 ~~np~s~~~e~ 272 (320)
T 4dj2_A 262 FVHPWSRKVAF 272 (320)
T ss_dssp EECTTTCSEEE
T ss_pred EECCCCCCccE
Confidence 443 244433
No 93
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=37.21 E-value=1e+02 Score=32.47 Aligned_cols=79 Identities=13% Similarity=0.154 Sum_probs=57.8
Q ss_pred CCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHHHHHHhcccc--CCCeeE-EccCCCeEEEcceEEeE
Q 004383 660 ASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFAKIMQQGFAY--LPGGMC-VSSMGRAVSYEQAVAWK 736 (757)
Q Consensus 660 ~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~~v~~qG~~~--~y~GvR-iSs~GRrf~ie~A~vW~ 736 (757)
.|=.|+|.|.++.++++|+-+||++.+..--.-|.++....+.+.++++.|-.. ...=.| ..+.|.-+|++ +-|+
T Consensus 182 ~dG~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~vwve--t~~~ 259 (317)
T 4dj3_A 182 PGCVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEYVILD--SSWS 259 (317)
T ss_dssp TTSBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCEEEEE--EEEE
T ss_pred CCCeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCEEEEE--EEEE
Confidence 467899999999999999999999988766666777887788888888864431 111234 37788888886 3555
Q ss_pred e-ecC
Q 004383 737 V-LDD 740 (757)
Q Consensus 737 v-~D~ 740 (757)
+ +|.
T Consensus 260 ~~~np 264 (317)
T 4dj3_A 260 SFVNP 264 (317)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 4 444
No 94
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=32.83 E-value=1.4e+02 Score=27.41 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=29.5
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeee
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIE 166 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lq 166 (757)
.+..|...|.++-++|.|-..|-+-+|.+.-..+.. | |++.
T Consensus 6 ~si~I~Ap~~~VW~~l~d~~~~~~w~p~v~~~~~~~-G--G~vR 46 (146)
T 3f08_A 6 TSMEIFGSTEQVWQLIGGFNSLPDWLPYIPSSKLTE-G--GRVR 46 (146)
T ss_dssp EEEEESSCHHHHHHHHCSTTCHHHHCTTCCEEEEEG-G--GTEE
T ss_pred EEEEEeCCHHHHHHHHhccccHHHhCCCeEEEEEeC-C--CeEE
Confidence 455667788999999999999877788775554442 3 6544
No 95
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=32.78 E-value=2.7e+02 Score=24.92 Aligned_cols=118 Identities=10% Similarity=0.022 Sum_probs=63.5
Q ss_pred eeEEeeChhhhhhhhcCcchhhhhCccceeeeeeccCCCCeeeeeeehhcccccccccceeEE--EEeeeeeCCCcEEEE
Q 004383 124 CGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPTGNGGTIELIYMQTYAPTTLAAARDFWL--LRYSTSLEDGSLVVC 201 (757)
Q Consensus 124 ~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~g~~G~lqLm~~e~~v~SpLvp~Re~~f--LRYckql~~G~wvVv 201 (757)
+-.|...+.++-+.|.|.+.|.+-+|...-+..... |... ..+.+. .-|.+.-+. .+|...-....+++.
T Consensus 8 ~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~---~~~~---~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T 2pcs_A 8 SIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGE---DKYK---ADLQIG--IAAVKGKYDAIIEVTDIKPPYHYKLL 79 (162)
T ss_dssp EEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEET---TEEE---EEEEEC--CGGGCEEEEEEEEEEEEETTTEEEEE
T ss_pred EEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCC---CeEE---EEEEEE--eeeEEEEEEEEEEEEecCCCcEEEEE
Confidence 456777899999999999998888887755555432 2221 111111 112222222 344444445555544
Q ss_pred EeecCCCCCCCCCCCCCccceeeecccceeeeecCCCceEEEEEEeeeecCCcccccchhhh
Q 004383 202 ERSLTSSTGGPTGPPPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRPLY 263 (757)
Q Consensus 202 DvSld~~~~~~~~~~~~~f~r~~rlPSGcLIq~~~nG~SkVtwVeH~e~d~~~V~el~RpL~ 263 (757)
-..-+. + .+.+. ---+-+.+..+|+|+|+|.-.+++... +..+..+++
T Consensus 80 ~~~~~~----~------~~~~~---~~~~~l~~~~~~gT~v~~~~~~~~~g~-l~~~~~~l~ 127 (162)
T 2pcs_A 80 VNGEGG----P------GFVNA---EGVIDLTPINDECTQLTYTYSAEVGGK-VAAIGQRML 127 (162)
T ss_dssp EEEEET----T------EEEEE---EEEEEEEESSSSEEEEEEEEEEEEESG-GGGGCHHHH
T ss_pred EEecCC----C------ccEEE---EEEEEEEecCCCcEEEEEEEEEEECCC-HHHhhHHHH
Confidence 332221 0 11111 112345676778999999877776433 344555555
No 96
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=30.33 E-value=13 Score=30.37 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.0
Q ss_pred chhhchhhhhhhhhhhhhcchhhhcc
Q 004383 5 LMEENDRLQKQVSHLVYENGYMRQQL 30 (757)
Q Consensus 5 l~een~rl~k~~~ql~~en~~~r~~~ 30 (757)
|-+||+.|++++++|--|...|++.|
T Consensus 35 L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777777777777777665
No 97
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=27.15 E-value=3.2e+02 Score=25.50 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=29.8
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceee-eeeccCC----CCeeeee
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVL-SVIPTGN----GGTIELI 168 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl-~~~~~g~----~G~lqLm 168 (757)
.+..|...|.++-++|.|-..| +-+|.+..- .+.. |. -|++..+
T Consensus 6 ~si~I~Ap~~~VW~~v~Df~~~-~w~P~v~~s~e~~e-g~~~~~vGsvR~~ 54 (160)
T 3p51_A 6 NSIVVDAPVERVWSRIRNFHDF-SWAPSLIKSCKKVG-GGGGYSVGARRLL 54 (160)
T ss_dssp EEEEESSCHHHHHHHHCCTTCC-TTCTTTCCCEEEES-SCCTTCTTCEEEE
T ss_pred EEEEECCCHHHHHHHHhCcCCC-eEccCceEEEEEEe-cCCCCCCCCEEEE
Confidence 4556777889999999999988 777766322 3332 32 2677665
No 98
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=27.10 E-value=13 Score=33.15 Aligned_cols=31 Identities=23% Similarity=0.168 Sum_probs=0.0
Q ss_pred cccchhhchhhhhhhhhhhhhcchhhhcccc
Q 004383 2 NKLLMEENDRLQKQVSHLVYENGYMRQQLHS 32 (757)
Q Consensus 2 nk~l~een~rl~k~~~ql~~en~~~r~~~~~ 32 (757)
++.+.+|+=-||||++||..|=+.+|++..+
T Consensus 38 ~~~~~~Etl~LQrQv~qLt~~lQ~~~~Ene~ 68 (95)
T 3n7n_E 38 PKKVVDETLFLQRQIAQLNKQLQLSFQENEK 68 (95)
T ss_dssp -------------------------------
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999988888887664
No 99
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=25.20 E-value=66 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=21.3
Q ss_pred chhhchhhhhhhhhhhhhcchhhhccc
Q 004383 5 LMEENDRLQKQVSHLVYENGYMRQQLH 31 (757)
Q Consensus 5 l~een~rl~k~~~ql~~en~~~r~~~~ 31 (757)
|-|.-..|..+++||=+||..||+-..
T Consensus 20 LKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 20 LKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 445566788889999999999997543
No 100
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=23.71 E-value=22 Score=28.45 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.4
Q ss_pred chhhchhhhhhhhhhhhhcchhhhcccc
Q 004383 5 LMEENDRLQKQVSHLVYENGYMRQQLHS 32 (757)
Q Consensus 5 l~een~rl~k~~~ql~~en~~~r~~~~~ 32 (757)
|-.||+.|++++..|.-+|..++++|.+
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5579999999999999999999998864
No 101
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=23.41 E-value=20 Score=30.57 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=26.6
Q ss_pred cchhhchhhhhhhhhhhhhcchhhhccccC
Q 004383 4 LLMEENDRLQKQVSHLVYENGYMRQQLHSA 33 (757)
Q Consensus 4 ~l~een~rl~k~~~ql~~en~~~r~~~~~~ 33 (757)
-|-+++++|++++.+|--||..|+++|...
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999754
No 102
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=22.98 E-value=3.9e+02 Score=23.71 Aligned_cols=37 Identities=8% Similarity=-0.009 Sum_probs=27.5
Q ss_pred eeeEEeeChhhhhhhhcCcchhhhhCccceeeeeecc
Q 004383 123 ACGLVSLDPTKIAEILKDCPSWFRDCRCLDVLSVIPT 159 (757)
Q Consensus 123 a~glV~m~~~~LVe~lmD~~~W~~~f~~i~vl~~~~~ 159 (757)
.+..|...+.++-+.|.|...|-+-+|.++-+.....
T Consensus 6 ~si~I~ap~e~Vw~~l~d~~~~~~w~p~v~~~~~~~g 42 (151)
T 2le1_A 6 RSVEVAAPAADVWTLVGDFSAIHRWHPQVSAPTLRGA 42 (151)
T ss_dssp EEEEESSCHHHHHHHHTTSGGGGGTCTTCCCEEEESS
T ss_pred EEEEecCCHHHHHHHHhCcCcHHHhcCCceEEEEECC
Confidence 3456677889999999999888777787755555443
No 103
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=22.76 E-value=1.5e+02 Score=31.59 Aligned_cols=66 Identities=12% Similarity=0.094 Sum_probs=45.4
Q ss_pred hHHHHHHHhcCCCeEEecCCCCCCCCeeEcccHHHHHhhccCHHHHhcccccccCChhcHHHHHHHHH
Q 004383 637 GDALLKQLWHHSDAIMCCSLKTNASPVFTFANQAGLDMLETTLVALQDIMLDKILDEAGRKILCTEFA 704 (757)
Q Consensus 637 ~~~~~k~L~~~~~aIl~h~~~~~~dPvF~YAN~aAL~m~E~tw~el~~lpsr~sae~~~R~eR~~lL~ 704 (757)
.+++...|..+.+.++..-.. .+=.++|.|.++.++|+|+-+||++.+.---.-|.+|++-.+.|.
T Consensus 84 ~~~~~~~ll~~~~gfi~v~~~--~~G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L~ 149 (387)
T 4f3l_B 84 DDELKHLILRAADGFLFVVGC--DRGKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQLS 149 (387)
T ss_dssp HHHHHHHHHHTCCSEEEEEET--TTCBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCEEEEEec--CCeEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHhc
Confidence 344445555544443333222 125799999999999999999999998776667888777666553
No 104
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=22.58 E-value=25 Score=36.14 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=16.7
Q ss_pred chhhchhhhhhhh----------hhhhhcchhhhccc
Q 004383 5 LMEENDRLQKQVS----------HLVYENGYMRQQLH 31 (757)
Q Consensus 5 l~een~rl~k~~~----------ql~~en~~~r~~~~ 31 (757)
|.|||++|++|.. +|-.||..||+.|.
T Consensus 24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLD 60 (255)
T ss_dssp --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666665544 45568888888776
No 105
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.29 E-value=29 Score=29.50 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=15.4
Q ss_pred hhhchhhhhhhhhhhhhcchhhh
Q 004383 6 MEENDRLQKQVSHLVYENGYMRQ 28 (757)
Q Consensus 6 ~een~rl~k~~~ql~~en~~~r~ 28 (757)
.+|+.+|+|++.+|-.||.+|++
T Consensus 65 ~~ei~~L~~e~~~L~~e~~~Lkk 87 (97)
T 2jn6_A 65 AEQIRQLKKENALQRARTRHPAE 87 (97)
T ss_dssp HHHHHHHHHCGGGGGGTTSCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666654
Done!