Query 004384
Match_columns 757
No_of_seqs 694 out of 5064
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 22:31:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0730 AAA+-type ATPase [Post 100.0 2E-114 3E-119 932.6 48.8 655 1-716 37-692 (693)
2 KOG0733 Nuclear AAA ATPase (VC 100.0 4E-112 9E-117 897.9 50.3 556 153-724 185-795 (802)
3 TIGR01243 CDC48 AAA family ATP 100.0 6.2E-97 1E-101 871.1 70.6 701 1-719 26-731 (733)
4 KOG0736 Peroxisome assembly fa 100.0 2.1E-86 4.5E-91 719.2 51.7 615 83-718 303-952 (953)
5 KOG0735 AAA+-type ATPase [Post 100.0 1.7E-72 3.7E-77 604.9 41.3 499 190-721 429-939 (952)
6 COG0464 SpoVK ATPases of the A 100.0 9.3E-66 2E-70 583.4 44.9 489 176-713 2-492 (494)
7 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-60 2.4E-65 481.9 24.3 253 421-699 141-393 (406)
8 KOG0741 AAA+-type ATPase [Post 100.0 4.2E-57 9.1E-62 471.8 37.6 568 22-612 47-683 (744)
9 KOG0738 AAA+-type ATPase [Post 100.0 1.1E-56 2.3E-61 454.8 20.8 284 422-719 203-490 (491)
10 KOG0739 AAA+-type ATPase [Post 100.0 1.9E-51 4.2E-56 402.3 16.4 294 421-720 123-438 (439)
11 COG1222 RPT1 ATP-dependent 26S 100.0 1E-48 2.3E-53 395.3 27.0 247 150-413 143-392 (406)
12 KOG0728 26S proteasome regulat 100.0 2.9E-49 6.2E-54 378.2 18.8 252 424-701 140-391 (404)
13 KOG0727 26S proteasome regulat 100.0 1.3E-48 2.8E-53 374.1 19.3 252 424-701 148-400 (408)
14 KOG0734 AAA+-type ATPase conta 100.0 1.4E-48 3.1E-53 408.4 18.6 243 426-698 299-541 (752)
15 CHL00195 ycf46 Ycf46; Provisio 100.0 8.9E-46 1.9E-50 408.8 40.2 398 251-716 81-483 (489)
16 KOG0729 26S proteasome regulat 100.0 1.9E-47 4.1E-52 368.8 18.5 268 413-714 159-426 (435)
17 KOG0726 26S proteasome regulat 100.0 1.9E-47 4E-52 373.2 15.2 249 424-698 178-426 (440)
18 KOG0652 26S proteasome regulat 100.0 8.9E-47 1.9E-51 363.0 17.0 250 423-698 163-412 (424)
19 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-45 5.1E-50 390.3 24.5 272 145-417 498-773 (802)
20 KOG0730 AAA+-type ATPase [Post 100.0 2.3E-45 5E-50 397.1 23.6 251 151-416 427-677 (693)
21 KOG0737 AAA+-type ATPase [Post 100.0 2.3E-45 4.9E-50 373.8 20.0 285 427-717 88-380 (386)
22 KOG0731 AAA+-type ATPase conta 100.0 1.1E-44 2.4E-49 404.3 21.9 248 426-700 306-555 (774)
23 PTZ00454 26S protease regulato 100.0 5.4E-44 1.2E-48 387.2 23.2 252 424-701 138-389 (398)
24 COG0465 HflB ATP-dependent Zn 100.0 3.3E-43 7.1E-48 387.1 19.2 247 425-698 144-390 (596)
25 COG1223 Predicted ATPase (AAA+ 100.0 6.9E-43 1.5E-47 336.5 16.7 245 425-703 115-360 (368)
26 PRK03992 proteasome-activating 100.0 6.1E-42 1.3E-46 373.9 24.0 259 421-705 121-379 (389)
27 KOG0736 Peroxisome assembly fa 100.0 7.5E-42 1.6E-46 372.4 23.4 268 149-417 663-936 (953)
28 PTZ00361 26 proteosome regulat 100.0 1.4E-41 3.1E-46 369.9 21.1 249 424-698 176-424 (438)
29 KOG0741 AAA+-type ATPase [Post 100.0 8E-42 1.7E-46 357.5 15.7 277 424-712 212-506 (744)
30 KOG0740 AAA+-type ATPase [Post 100.0 1.7E-41 3.7E-46 359.1 15.9 277 423-719 145-425 (428)
31 KOG0651 26S proteasome regulat 100.0 5.9E-41 1.3E-45 331.5 12.9 247 426-698 127-373 (388)
32 KOG0738 AAA+-type ATPase [Post 100.0 5.8E-39 1.2E-43 326.0 22.0 264 151-418 205-474 (491)
33 TIGR01241 FtsH_fam ATP-depende 100.0 4.3E-39 9.2E-44 363.9 23.3 249 424-699 48-296 (495)
34 KOG0652 26S proteasome regulat 100.0 1.3E-38 2.9E-43 306.7 22.1 295 102-413 102-412 (424)
35 TIGR03689 pup_AAA proteasome A 100.0 1.5E-38 3.2E-43 350.2 23.1 252 423-698 174-478 (512)
36 COG1223 Predicted ATPase (AAA+ 100.0 9.7E-38 2.1E-42 301.0 25.6 302 84-413 51-355 (368)
37 KOG0726 26S proteasome regulat 100.0 1.4E-38 3E-43 311.1 19.6 247 150-413 177-426 (440)
38 KOG0728 26S proteasome regulat 100.0 2.6E-38 5.6E-43 303.0 20.2 247 150-413 139-388 (404)
39 TIGR01242 26Sp45 26S proteasom 100.0 3E-38 6.5E-43 344.0 23.0 251 422-698 113-363 (364)
40 KOG0734 AAA+-type ATPase conta 100.0 3.1E-38 6.7E-43 331.0 21.2 228 151-379 297-524 (752)
41 KOG0727 26S proteasome regulat 100.0 4.8E-38 1E-42 301.5 20.3 230 151-380 148-380 (408)
42 CHL00176 ftsH cell division pr 100.0 1E-37 2.2E-42 355.3 23.1 246 426-698 178-423 (638)
43 KOG0735 AAA+-type ATPase [Post 100.0 2.9E-37 6.3E-42 333.3 23.2 229 153-381 662-890 (952)
44 KOG0732 AAA+-type ATPase conta 100.0 6.5E-37 1.4E-41 350.2 23.2 387 153-540 260-669 (1080)
45 KOG0729 26S proteasome regulat 100.0 7.2E-37 1.6E-41 295.6 18.3 230 151-380 170-402 (435)
46 PRK10733 hflB ATP-dependent me 100.0 3.5E-36 7.5E-41 347.4 22.7 248 426-700 147-394 (644)
47 CHL00206 ycf2 Ycf2; Provisiona 100.0 4.8E-36 1E-40 355.5 21.0 212 452-698 1617-1877(2281)
48 KOG0732 AAA+-type ATPase conta 100.0 1.9E-36 4.2E-41 346.3 16.8 266 426-704 260-531 (1080)
49 KOG0739 AAA+-type ATPase [Post 100.0 1E-35 2.3E-40 291.9 16.2 227 152-381 127-355 (439)
50 PTZ00454 26S protease regulato 100.0 1E-34 2.2E-39 314.9 25.6 246 151-413 138-386 (398)
51 PLN00020 ribulose bisphosphate 100.0 1.8E-34 3.9E-39 297.5 23.5 227 460-698 143-391 (413)
52 KOG0731 AAA+-type ATPase conta 100.0 2.8E-34 6.1E-39 321.1 22.3 229 153-382 306-539 (774)
53 KOG0737 AAA+-type ATPase [Post 100.0 2.1E-34 4.6E-39 293.7 19.4 228 153-382 87-317 (386)
54 TIGR01243 CDC48 AAA family ATP 100.0 1.8E-33 4E-38 332.2 26.5 266 152-417 447-714 (733)
55 PRK03992 proteasome-activating 100.0 4.4E-33 9.5E-38 304.2 24.9 250 151-417 124-376 (389)
56 PTZ00361 26 proteosome regulat 100.0 3.8E-33 8.3E-38 303.9 22.9 246 151-413 176-424 (438)
57 TIGR02639 ClpA ATP-dependent C 100.0 5E-32 1.1E-36 318.8 34.2 444 153-657 177-716 (731)
58 COG0464 SpoVK ATPases of the A 100.0 8.4E-33 1.8E-37 314.0 25.5 250 151-416 235-486 (494)
59 PRK11034 clpA ATP-dependent Cl 100.0 2.1E-31 4.6E-36 308.5 33.5 447 156-657 184-720 (758)
60 COG0465 HflB ATP-dependent Zn 100.0 2.7E-32 5.9E-37 300.9 20.3 231 152-383 144-377 (596)
61 CHL00195 ycf46 Ycf46; Provisio 100.0 7.9E-31 1.7E-35 290.1 25.6 242 153-417 223-467 (489)
62 TIGR01242 26Sp45 26S proteasom 100.0 2.4E-30 5.1E-35 282.0 27.8 245 151-412 115-362 (364)
63 TIGR01241 FtsH_fam ATP-depende 100.0 1.9E-30 4.2E-35 293.4 23.6 244 152-413 49-295 (495)
64 KOG0651 26S proteasome regulat 100.0 2.6E-31 5.7E-36 263.2 13.0 230 150-379 124-356 (388)
65 TIGR03689 pup_AAA proteasome A 100.0 4.9E-30 1.1E-34 282.9 22.4 221 151-377 175-411 (512)
66 CHL00176 ftsH cell division pr 100.0 2.9E-29 6.3E-34 286.2 22.9 243 153-413 178-423 (638)
67 TIGR03345 VI_ClpV1 type VI sec 100.0 7.5E-28 1.6E-32 284.7 33.6 455 153-657 182-835 (852)
68 CHL00095 clpC Clp protease ATP 100.0 1.2E-27 2.7E-32 284.7 34.3 456 155-657 176-786 (821)
69 KOG0740 AAA+-type ATPase [Post 100.0 8.7E-29 1.9E-33 262.6 17.5 261 150-417 145-408 (428)
70 TIGR03346 chaperone_ClpB ATP-d 100.0 1.2E-26 2.6E-31 277.0 35.5 460 153-657 168-830 (852)
71 PRK10865 protein disaggregatio 100.0 2E-26 4.4E-31 273.5 33.9 456 153-657 173-833 (857)
72 COG0542 clpA ATP-binding subun 100.0 9E-27 2E-31 263.4 29.0 455 154-656 166-758 (786)
73 PLN00020 ribulose bisphosphate 100.0 2.3E-27 4.9E-32 245.1 21.7 214 156-374 113-349 (413)
74 PRK10733 hflB ATP-dependent me 100.0 2.2E-27 4.8E-32 274.3 23.6 226 154-380 148-376 (644)
75 CHL00206 ycf2 Ycf2; Provisiona 100.0 2.7E-27 5.8E-32 281.8 20.8 197 179-381 1617-1862(2281)
76 KOG0744 AAA+-type ATPase [Post 99.9 9.1E-24 2E-28 210.7 9.6 188 429-618 140-343 (423)
77 CHL00181 cbbX CbbX; Provisiona 99.9 2.4E-22 5.3E-27 210.0 16.5 216 430-658 22-260 (287)
78 KOG0743 AAA+-type ATPase [Post 99.9 2.7E-22 5.9E-27 211.1 15.3 222 428-658 198-429 (457)
79 KOG0742 AAA+-type ATPase [Post 99.9 1.2E-21 2.6E-26 200.6 17.3 209 428-648 352-588 (630)
80 TIGR02880 cbbX_cfxQ probable R 99.9 6.5E-22 1.4E-26 207.1 14.7 213 432-657 23-258 (284)
81 TIGR02881 spore_V_K stage V sp 99.9 1.8E-21 3.9E-26 202.4 16.5 215 430-658 5-244 (261)
82 PF00004 AAA: ATPase family as 99.9 1E-21 2.2E-26 182.4 12.8 130 468-601 1-132 (132)
83 PF00004 AAA: ATPase family as 99.8 1.1E-18 2.4E-23 161.9 15.7 130 195-325 1-132 (132)
84 CHL00181 cbbX CbbX; Provisiona 99.8 1.3E-17 2.9E-22 174.4 19.5 212 157-379 22-257 (287)
85 TIGR02880 cbbX_cfxQ probable R 99.8 2.6E-17 5.7E-22 172.4 18.3 210 159-378 23-255 (284)
86 TIGR02881 spore_V_K stage V sp 99.7 7E-17 1.5E-21 168.0 20.5 175 157-342 5-194 (261)
87 PF05496 RuvB_N: Holliday junc 99.7 2.9E-17 6.3E-22 160.2 14.8 188 427-647 20-224 (233)
88 TIGR02639 ClpA ATP-dependent C 99.7 3.6E-17 7.7E-22 193.3 18.0 165 428-617 179-360 (731)
89 TIGR00763 lon ATP-dependent pr 99.7 3.9E-17 8.5E-22 193.9 16.4 164 431-615 320-505 (775)
90 TIGR00635 ruvB Holliday juncti 99.7 8.2E-16 1.8E-20 164.3 21.1 192 429-653 2-210 (305)
91 PRK00080 ruvB Holliday junctio 99.7 7.4E-16 1.6E-20 165.8 20.3 233 428-719 22-274 (328)
92 PRK11034 clpA ATP-dependent Cl 99.7 2.2E-16 4.7E-21 183.9 16.3 198 429-651 184-408 (758)
93 KOG2004 Mitochondrial ATP-depe 99.7 1.7E-16 3.7E-21 173.7 13.9 202 431-659 411-640 (906)
94 KOG0742 AAA+-type ATPase [Post 99.7 7.9E-16 1.7E-20 158.3 17.0 179 191-374 383-590 (630)
95 KOG0743 AAA+-type ATPase [Post 99.7 8.7E-16 1.9E-20 162.3 16.3 177 156-340 199-384 (457)
96 PF05496 RuvB_N: Holliday junc 99.7 2E-15 4.3E-20 147.4 16.7 182 150-360 16-214 (233)
97 KOG0744 AAA+-type ATPase [Post 99.7 3E-16 6.5E-21 157.3 10.5 173 165-339 149-340 (423)
98 COG2255 RuvB Holliday junction 99.7 6E-15 1.3E-19 146.2 19.1 189 427-648 22-227 (332)
99 KOG1051 Chaperone HSP104 and r 99.7 2.7E-14 5.8E-19 164.8 27.4 159 158-339 186-363 (898)
100 COG2256 MGS1 ATPase related to 99.6 7.6E-15 1.7E-19 152.5 17.5 176 427-647 20-212 (436)
101 COG0466 Lon ATP-dependent Lon 99.6 7.2E-15 1.6E-19 162.4 17.8 164 431-615 323-508 (782)
102 PRK05342 clpX ATP-dependent pr 99.6 8.8E-15 1.9E-19 159.7 17.7 223 432-656 72-382 (412)
103 PRK10787 DNA-binding ATP-depen 99.6 1.4E-14 3E-19 170.4 18.6 252 431-733 322-607 (784)
104 PRK07003 DNA polymerase III su 99.6 3.9E-14 8.5E-19 160.0 19.5 186 427-650 12-226 (830)
105 PRK12323 DNA polymerase III su 99.6 1.7E-14 3.7E-19 161.0 16.4 186 427-650 12-231 (700)
106 TIGR03345 VI_ClpV1 type VI sec 99.6 2.4E-14 5.3E-19 170.2 18.1 197 428-650 184-408 (852)
107 TIGR00382 clpX endopeptidase C 99.6 3.1E-14 6.8E-19 154.3 16.8 223 432-656 78-388 (413)
108 TIGR02902 spore_lonB ATP-depen 99.6 2.6E-14 5.5E-19 162.3 16.8 210 427-697 61-331 (531)
109 TIGR00763 lon ATP-dependent pr 99.6 3E-14 6.4E-19 169.4 18.1 199 158-374 320-552 (775)
110 COG2255 RuvB Holliday junction 99.6 5E-14 1.1E-18 139.8 16.2 191 151-371 19-226 (332)
111 PRK10865 protein disaggregatio 99.6 1.7E-14 3.7E-19 172.1 15.2 167 428-620 175-359 (857)
112 TIGR00390 hslU ATP-dependent p 99.6 3.5E-14 7.5E-19 151.3 15.7 176 432-611 13-342 (441)
113 PRK07940 DNA polymerase III su 99.6 5.2E-14 1.1E-18 153.0 15.5 187 429-646 3-216 (394)
114 PRK05201 hslU ATP-dependent pr 99.5 3.7E-14 8E-19 151.2 13.7 176 432-611 16-344 (443)
115 PRK00080 ruvB Holliday junctio 99.5 2.9E-13 6.3E-18 145.7 19.8 192 151-372 18-226 (328)
116 PRK14962 DNA polymerase III su 99.5 3.4E-13 7.4E-18 150.1 20.6 182 427-646 10-220 (472)
117 PRK14956 DNA polymerase III su 99.5 1.2E-13 2.6E-18 151.0 16.1 184 427-648 14-226 (484)
118 TIGR00362 DnaA chromosomal rep 99.5 1.1E-13 2.4E-18 153.5 16.1 172 466-654 137-320 (405)
119 PRK00149 dnaA chromosomal repl 99.5 8.7E-14 1.9E-18 156.1 15.4 173 466-654 149-332 (450)
120 TIGR00635 ruvB Holliday juncti 99.5 3.4E-13 7.4E-18 144.1 19.2 188 156-373 2-206 (305)
121 TIGR02928 orc1/cdc6 family rep 99.5 2.8E-13 6.1E-18 148.6 18.8 202 431-655 15-257 (365)
122 PRK13342 recombination factor 99.5 3.5E-13 7.6E-18 149.5 19.4 180 428-649 9-201 (413)
123 TIGR03346 chaperone_ClpB ATP-d 99.5 8.7E-14 1.9E-18 166.9 15.3 183 428-636 170-375 (852)
124 PRK14960 DNA polymerase III su 99.5 3.2E-13 6.8E-18 151.3 18.4 186 427-650 11-225 (702)
125 CHL00095 clpC Clp protease ATP 99.5 5.7E-14 1.2E-18 168.0 13.4 185 427-637 175-381 (821)
126 PRK04195 replication factor C 99.5 2.1E-13 4.4E-18 154.2 17.2 191 427-652 10-207 (482)
127 KOG2004 Mitochondrial ATP-depe 99.5 1.6E-13 3.4E-18 150.8 14.0 164 158-339 411-596 (906)
128 PRK14961 DNA polymerase III su 99.5 5.6E-13 1.2E-17 145.1 18.3 185 427-649 12-225 (363)
129 PRK14949 DNA polymerase III su 99.5 7E-13 1.5E-17 152.8 19.5 185 427-649 12-225 (944)
130 PF05673 DUF815: Protein of un 99.5 1E-12 2.2E-17 130.3 17.4 192 425-647 21-244 (249)
131 PRK06645 DNA polymerase III su 99.5 8.1E-13 1.7E-17 147.5 18.7 194 427-652 17-237 (507)
132 COG0466 Lon ATP-dependent Lon 99.5 6.8E-13 1.5E-17 146.9 17.5 164 158-339 323-508 (782)
133 COG2256 MGS1 ATPase related to 99.5 7.4E-13 1.6E-17 137.9 16.6 149 151-337 17-174 (436)
134 PRK00411 cdc6 cell division co 99.5 9.6E-13 2.1E-17 145.9 18.4 203 431-655 30-265 (394)
135 PRK07994 DNA polymerase III su 99.5 1.6E-12 3.5E-17 148.0 20.4 185 427-649 12-225 (647)
136 PRK12422 chromosomal replicati 99.5 5.2E-13 1.1E-17 147.9 15.8 169 465-649 141-318 (445)
137 PRK14088 dnaA chromosomal repl 99.5 5.8E-13 1.3E-17 148.0 15.0 172 466-653 131-314 (440)
138 PRK14958 DNA polymerase III su 99.5 5.7E-13 1.2E-17 149.8 14.5 186 427-650 12-226 (509)
139 PRK14086 dnaA chromosomal repl 99.4 1.6E-12 3.4E-17 146.0 16.4 171 466-653 315-497 (617)
140 PRK12402 replication factor C 99.4 1.9E-12 4E-17 140.5 16.7 187 428-650 12-229 (337)
141 PRK14964 DNA polymerase III su 99.4 3.6E-12 7.8E-17 141.2 19.0 187 427-651 9-224 (491)
142 PRK08691 DNA polymerase III su 99.4 2.3E-12 5E-17 145.9 17.8 187 427-651 12-227 (709)
143 PRK14963 DNA polymerase III su 99.4 2.7E-12 5.9E-17 144.0 18.1 184 427-648 10-221 (504)
144 PRK05563 DNA polymerase III su 99.4 3.7E-12 8E-17 145.3 19.3 186 427-650 12-226 (559)
145 TIGR02903 spore_lon_C ATP-depe 99.4 1.1E-11 2.3E-16 143.2 22.8 223 427-699 150-431 (615)
146 PLN03025 replication factor C 99.4 2.7E-12 5.8E-17 137.7 16.5 180 427-648 9-201 (319)
147 PRK07764 DNA polymerase III su 99.4 4.1E-12 8.9E-17 149.4 18.9 185 427-649 11-226 (824)
148 PRK14959 DNA polymerase III su 99.4 2.7E-12 5.8E-17 144.9 16.6 183 427-647 12-223 (624)
149 PRK14951 DNA polymerase III su 99.4 6.1E-12 1.3E-16 143.1 19.5 185 428-650 13-231 (618)
150 PRK14952 DNA polymerase III su 99.4 6.5E-12 1.4E-16 142.5 19.3 186 427-650 9-225 (584)
151 PRK06893 DNA replication initi 99.4 2.6E-12 5.7E-17 130.8 13.8 159 467-648 41-207 (229)
152 KOG0989 Replication factor C, 99.4 1.4E-11 3E-16 124.0 18.4 180 427-645 32-228 (346)
153 TIGR03420 DnaA_homol_Hda DnaA 99.4 4.5E-12 9.7E-17 129.3 15.4 165 465-654 38-211 (226)
154 PRK13341 recombination factor 99.4 4.4E-12 9.6E-17 147.5 17.1 181 427-649 24-222 (725)
155 TIGR02397 dnaX_nterm DNA polym 99.4 1.2E-11 2.5E-16 135.3 19.4 186 427-650 10-224 (355)
156 PHA02544 44 clamp loader, smal 99.4 3.3E-12 7.1E-17 137.2 14.6 156 427-615 17-173 (316)
157 PRK05896 DNA polymerase III su 99.4 1.3E-11 2.9E-16 138.6 19.6 185 427-649 12-225 (605)
158 PRK14969 DNA polymerase III su 99.4 7.3E-12 1.6E-16 141.9 17.1 186 428-651 13-227 (527)
159 PRK14957 DNA polymerase III su 99.4 7.8E-12 1.7E-16 140.5 17.1 185 427-649 12-225 (546)
160 PTZ00112 origin recognition co 99.4 9.3E-12 2E-16 141.2 17.6 160 468-643 784-977 (1164)
161 PRK07133 DNA polymerase III su 99.4 2.5E-11 5.4E-16 139.0 21.1 191 427-649 14-224 (725)
162 PRK14953 DNA polymerase III su 99.4 1.1E-11 2.3E-16 138.8 16.8 186 427-650 12-226 (486)
163 PRK14087 dnaA chromosomal repl 99.3 7.8E-12 1.7E-16 139.1 14.4 172 466-654 142-329 (450)
164 PRK08084 DNA replication initi 99.3 2.4E-11 5.3E-16 124.1 16.8 158 466-648 46-213 (235)
165 PRK14956 DNA polymerase III su 99.3 4.2E-11 9.1E-16 131.2 19.4 187 151-372 11-226 (484)
166 PRK07003 DNA polymerase III su 99.3 3.5E-11 7.7E-16 136.4 19.0 187 150-371 8-223 (830)
167 PRK14965 DNA polymerase III su 99.3 1.9E-11 4.2E-16 140.1 17.1 185 427-649 12-225 (576)
168 PRK04195 replication factor C 99.3 3.5E-11 7.5E-16 136.2 18.9 180 151-359 7-194 (482)
169 PRK10787 DNA-binding ATP-depen 99.3 2.3E-11 4.9E-16 143.4 17.9 202 158-378 322-557 (784)
170 PRK06305 DNA polymerase III su 99.3 6.7E-11 1.4E-15 131.7 20.7 183 427-647 13-225 (451)
171 PRK12323 DNA polymerase III su 99.3 2.3E-11 4.9E-16 136.3 16.6 186 151-371 9-228 (700)
172 PRK14962 DNA polymerase III su 99.3 4.7E-11 1E-15 133.1 19.1 174 151-359 7-210 (472)
173 COG0488 Uup ATPase components 99.3 2.6E-11 5.7E-16 136.0 16.8 61 238-312 158-218 (530)
174 PRK14970 DNA polymerase III su 99.3 3.6E-11 7.9E-16 131.8 17.6 191 427-649 13-214 (367)
175 PRK08903 DnaA regulatory inact 99.3 3.6E-11 7.8E-16 122.6 16.3 175 464-696 41-224 (227)
176 COG1224 TIP49 DNA helicase TIP 99.3 1.1E-10 2.3E-15 119.5 19.0 98 572-698 322-432 (450)
177 TIGR01650 PD_CobS cobaltochela 99.3 1.5E-11 3.3E-16 128.5 12.8 142 462-617 61-235 (327)
178 PRK06647 DNA polymerase III su 99.3 3E-11 6.5E-16 137.3 16.2 183 427-647 12-223 (563)
179 TIGR02640 gas_vesic_GvpN gas v 99.3 1.4E-11 3E-16 128.1 12.3 132 465-615 21-198 (262)
180 PRK08727 hypothetical protein; 99.3 4.5E-11 9.9E-16 121.9 15.9 157 466-647 42-207 (233)
181 PRK13342 recombination factor 99.3 9.1E-11 2E-15 130.2 19.3 181 151-371 5-199 (413)
182 COG1474 CDC6 Cdc6-related prot 99.3 9.3E-11 2E-15 126.5 18.6 177 465-656 42-249 (366)
183 PRK08451 DNA polymerase III su 99.3 4.6E-11 1E-15 133.6 16.8 188 427-652 10-226 (535)
184 KOG2028 ATPase related to the 99.3 8.4E-11 1.8E-15 120.2 16.9 122 466-615 163-294 (554)
185 PRK09111 DNA polymerase III su 99.3 5.3E-11 1.1E-15 135.9 17.1 192 427-650 20-239 (598)
186 PRK07940 DNA polymerase III su 99.3 1E-10 2.2E-15 127.4 18.3 184 156-367 3-213 (394)
187 TIGR02902 spore_lonB ATP-depen 99.3 6.9E-11 1.5E-15 134.5 17.5 199 150-377 57-313 (531)
188 PRK05642 DNA replication initi 99.3 7.2E-11 1.6E-15 120.5 15.7 160 466-650 46-214 (234)
189 PF05673 DUF815: Protein of un 99.3 1.7E-10 3.7E-15 114.7 17.4 167 151-345 20-213 (249)
190 PRK14955 DNA polymerase III su 99.3 1.2E-10 2.6E-15 128.4 17.9 187 427-651 12-235 (397)
191 PRK14961 DNA polymerase III su 99.3 1.6E-10 3.5E-15 125.9 18.4 187 151-372 9-224 (363)
192 PRK14948 DNA polymerase III su 99.3 2.7E-10 5.8E-15 131.1 20.8 183 427-647 12-225 (620)
193 PRK13407 bchI magnesium chelat 99.3 5E-11 1.1E-15 126.6 13.6 157 427-615 4-216 (334)
194 PRK00440 rfc replication facto 99.3 1.2E-10 2.6E-15 125.3 16.8 182 428-648 14-207 (319)
195 PRK14960 DNA polymerase III su 99.3 2.1E-10 4.5E-15 129.0 18.9 188 151-373 8-224 (702)
196 PLN03025 replication factor C 99.3 1.1E-10 2.5E-15 125.1 16.2 174 150-359 5-192 (319)
197 PRK14949 DNA polymerase III su 99.2 2.8E-10 6E-15 131.7 20.2 192 151-371 9-223 (944)
198 PRK14954 DNA polymerase III su 99.2 3.1E-10 6.8E-15 129.8 20.4 187 427-651 12-235 (620)
199 PRK05342 clpX ATP-dependent pr 99.2 3.3E-10 7.1E-15 124.0 19.4 217 160-378 73-380 (412)
200 TIGR00390 hslU ATP-dependent p 99.2 5.7E-11 1.2E-15 127.0 12.9 175 160-336 14-343 (441)
201 TIGR02928 orc1/cdc6 family rep 99.2 5.3E-10 1.2E-14 122.7 21.0 201 158-378 15-256 (365)
202 PHA02544 44 clamp loader, smal 99.2 1.5E-10 3.2E-15 124.5 16.1 159 150-338 13-172 (316)
203 TIGR03420 DnaA_homol_Hda DnaA 99.2 4.4E-10 9.5E-15 114.6 18.5 186 156-374 13-207 (226)
204 COG0593 DnaA ATPase involved i 99.2 1.4E-10 3.1E-15 124.4 15.3 175 465-656 113-298 (408)
205 PRK07994 DNA polymerase III su 99.2 4.1E-10 8.9E-15 128.6 19.8 186 151-371 9-223 (647)
206 cd00009 AAA The AAA+ (ATPases 99.2 1.2E-10 2.6E-15 109.3 12.7 121 465-601 19-151 (151)
207 PRK00411 cdc6 cell division co 99.2 1.3E-09 2.8E-14 120.9 22.9 201 158-377 30-263 (394)
208 PRK12402 replication factor C 99.2 7.4E-10 1.6E-14 120.2 20.5 180 151-359 8-218 (337)
209 PRK05201 hslU ATP-dependent pr 99.2 6.2E-11 1.3E-15 126.8 11.6 175 160-336 17-345 (443)
210 PRK00149 dnaA chromosomal repl 99.2 2.1E-10 4.6E-15 128.8 16.4 166 193-372 149-326 (450)
211 PRK06645 DNA polymerase III su 99.2 6.2E-10 1.3E-14 124.6 19.9 194 151-373 14-234 (507)
212 PF00308 Bac_DnaA: Bacterial d 99.2 6.6E-11 1.4E-15 119.4 11.0 169 466-651 35-215 (219)
213 COG2607 Predicted ATPase (AAA+ 99.2 6.6E-10 1.4E-14 108.1 17.0 194 423-647 52-276 (287)
214 COG2812 DnaX DNA polymerase II 99.2 1.7E-10 3.6E-15 127.5 14.6 194 427-652 12-228 (515)
215 PRK06620 hypothetical protein; 99.2 1.5E-10 3.2E-15 116.2 13.0 144 466-647 45-192 (214)
216 KOG2028 ATPase related to the 99.2 4.7E-10 1E-14 114.7 16.7 181 150-368 130-337 (554)
217 TIGR00362 DnaA chromosomal rep 99.2 2.8E-10 6E-15 126.4 16.3 168 192-373 136-315 (405)
218 PF00308 Bac_DnaA: Bacterial d 99.2 1E-09 2.2E-14 110.7 18.9 165 193-370 35-210 (219)
219 PRK14964 DNA polymerase III su 99.2 6.4E-10 1.4E-14 123.4 18.8 188 151-373 6-222 (491)
220 PRK14950 DNA polymerase III su 99.2 2.3E-10 4.9E-15 132.1 15.8 183 427-647 12-224 (585)
221 CHL00081 chlI Mg-protoporyphyr 99.2 2.1E-10 4.6E-15 122.0 14.1 161 426-615 12-232 (350)
222 PRK14958 DNA polymerase III su 99.2 4.7E-10 1E-14 126.4 17.5 188 151-373 9-225 (509)
223 PRK08691 DNA polymerase III su 99.2 6.1E-10 1.3E-14 126.5 18.3 188 151-373 9-225 (709)
224 PRK14963 DNA polymerase III su 99.2 1.1E-09 2.4E-14 123.1 20.2 176 151-360 7-210 (504)
225 TIGR02030 BchI-ChlI magnesium 99.2 2.3E-10 4.9E-15 121.9 13.5 156 429-616 2-220 (337)
226 PRK06893 DNA replication initi 99.2 5.4E-10 1.2E-14 113.8 15.7 148 193-360 40-196 (229)
227 COG0714 MoxR-like ATPases [Gen 99.2 1E-10 2.2E-15 126.1 10.7 132 465-616 43-204 (329)
228 PRK14971 DNA polymerase III su 99.2 7.4E-10 1.6E-14 127.5 18.3 184 427-648 13-226 (614)
229 PRK14088 dnaA chromosomal repl 99.2 3.8E-10 8.2E-15 125.6 15.2 167 193-371 131-308 (440)
230 PRK07764 DNA polymerase III su 99.2 1.1E-09 2.5E-14 129.1 19.6 185 151-370 8-223 (824)
231 PTZ00112 origin recognition co 99.2 9.5E-10 2.1E-14 125.2 18.1 180 158-357 755-968 (1164)
232 COG1219 ClpX ATP-dependent pro 99.2 1E-10 2.2E-15 117.9 9.0 135 431-565 61-203 (408)
233 PRK14086 dnaA chromosomal repl 99.2 6.4E-10 1.4E-14 125.2 16.5 167 193-371 315-491 (617)
234 PRK14952 DNA polymerase III su 99.1 1.9E-09 4.2E-14 122.5 20.3 187 151-372 6-223 (584)
235 PHA02244 ATPase-like protein 99.1 7.1E-10 1.5E-14 117.1 15.0 120 465-604 119-263 (383)
236 PRK08084 DNA replication initi 99.1 3.4E-09 7.5E-14 108.3 19.7 147 192-360 45-202 (235)
237 cd00009 AAA The AAA+ (ATPases 99.1 1.1E-09 2.4E-14 102.7 14.9 121 191-324 18-150 (151)
238 PRK14959 DNA polymerase III su 99.1 1.2E-09 2.6E-14 123.7 17.5 176 151-360 9-213 (624)
239 PRK14957 DNA polymerase III su 99.1 2.6E-09 5.5E-14 120.4 20.1 187 151-372 9-224 (546)
240 TIGR00382 clpX endopeptidase C 99.1 1.3E-09 2.8E-14 118.6 16.7 217 160-378 79-386 (413)
241 COG5271 MDN1 AAA ATPase contai 99.1 5.8E-09 1.3E-13 122.5 22.4 134 463-615 1541-1703(4600)
242 COG0542 clpA ATP-binding subun 99.1 4.9E-10 1.1E-14 128.3 13.5 171 428-623 167-354 (786)
243 PRK08903 DnaA regulatory inact 99.1 3.5E-09 7.7E-14 108.0 18.5 177 154-371 14-202 (227)
244 PRK14951 DNA polymerase III su 99.1 2.3E-09 5E-14 122.3 18.7 192 151-371 9-228 (618)
245 TIGR02640 gas_vesic_GvpN gas v 99.1 1.2E-09 2.6E-14 113.6 15.2 132 192-339 21-198 (262)
246 KOG1969 DNA replication checkp 99.1 1.3E-09 2.9E-14 120.8 16.1 171 463-656 324-519 (877)
247 PRK05563 DNA polymerase III su 99.1 2.7E-09 5.8E-14 122.0 19.3 187 151-372 9-224 (559)
248 PRK12422 chromosomal replicati 99.1 1.2E-09 2.5E-14 121.4 15.6 155 193-359 142-305 (445)
249 PF07728 AAA_5: AAA domain (dy 99.1 2.9E-11 6.2E-16 113.3 2.5 109 467-593 1-139 (139)
250 KOG0989 Replication factor C, 99.1 1.7E-09 3.7E-14 109.1 15.1 179 150-360 28-223 (346)
251 PRK14969 DNA polymerase III su 99.1 1.6E-09 3.4E-14 123.0 16.9 188 151-373 9-225 (527)
252 PRK07471 DNA polymerase III su 99.1 5.8E-09 1.3E-13 112.8 20.4 185 427-646 15-240 (365)
253 PRK08727 hypothetical protein; 99.1 3.1E-09 6.8E-14 108.4 17.4 145 193-359 42-196 (233)
254 PRK05896 DNA polymerase III su 99.1 3.1E-09 6.7E-14 119.8 18.7 186 151-371 9-223 (605)
255 smart00382 AAA ATPases associa 99.1 5E-10 1.1E-14 104.2 10.6 126 466-602 3-147 (148)
256 PRK09112 DNA polymerase III su 99.1 2.5E-09 5.3E-14 115.1 17.0 190 427-649 19-245 (351)
257 PRK14970 DNA polymerase III su 99.1 4E-09 8.7E-14 115.7 19.0 176 150-359 9-201 (367)
258 TIGR00678 holB DNA polymerase 99.1 8.3E-10 1.8E-14 109.1 12.2 143 464-635 13-183 (188)
259 PRK07133 DNA polymerase III su 99.1 4.3E-09 9.4E-14 120.9 19.6 191 151-370 11-221 (725)
260 PF07724 AAA_2: AAA domain (Cd 99.1 1.8E-10 3.8E-15 111.2 7.0 113 464-581 2-131 (171)
261 TIGR02397 dnaX_nterm DNA polym 99.1 3.5E-09 7.5E-14 115.8 18.0 175 151-359 7-210 (355)
262 PRK13341 recombination factor 99.1 2.4E-09 5.3E-14 124.8 17.6 183 151-373 21-222 (725)
263 PRK09087 hypothetical protein; 99.1 7.1E-10 1.5E-14 112.2 11.4 135 467-634 46-186 (226)
264 PRK11331 5-methylcytosine-spec 99.1 8.1E-10 1.8E-14 119.8 12.2 121 465-601 194-357 (459)
265 PRK05564 DNA polymerase III su 99.1 3.1E-09 6.8E-14 113.7 16.0 171 429-637 2-184 (313)
266 COG1123 ATPase components of v 99.1 3.9E-10 8.4E-15 124.4 9.0 57 241-307 162-218 (539)
267 PRK14953 DNA polymerase III su 99.1 6.9E-09 1.5E-13 116.4 19.2 193 151-372 9-224 (486)
268 TIGR00764 lon_rel lon-related 99.0 1.5E-09 3.3E-14 125.0 14.1 86 423-523 10-105 (608)
269 PRK06647 DNA polymerase III su 99.0 7.5E-09 1.6E-13 117.9 19.3 187 151-372 9-224 (563)
270 TIGR02442 Cob-chelat-sub cobal 99.0 1.8E-09 3.8E-14 125.8 14.4 156 429-616 2-215 (633)
271 COG1220 HslU ATP-dependent pro 99.0 9.1E-09 2E-13 104.7 17.3 83 526-612 252-346 (444)
272 PRK00440 rfc replication facto 99.0 9.2E-09 2E-13 110.7 18.6 176 150-360 9-196 (319)
273 PRK06305 DNA polymerase III su 99.0 1.2E-08 2.5E-13 113.9 19.8 176 150-359 9-214 (451)
274 PRK05642 DNA replication initi 99.0 7.2E-09 1.6E-13 105.8 16.7 145 193-359 46-200 (234)
275 PRK14965 DNA polymerase III su 99.0 5.6E-09 1.2E-13 120.0 17.6 185 151-370 9-222 (576)
276 TIGR03015 pepcterm_ATPase puta 99.0 5.6E-09 1.2E-13 109.4 15.5 191 467-699 45-267 (269)
277 TIGR02903 spore_lon_C ATP-depe 99.0 2.6E-08 5.5E-13 115.3 22.1 180 151-357 147-385 (615)
278 PRK14087 dnaA chromosomal repl 99.0 5.7E-09 1.2E-13 116.3 15.7 167 193-373 142-324 (450)
279 COG5271 MDN1 AAA ATPase contai 99.0 1.3E-08 2.9E-13 119.6 17.9 132 191-337 887-1045(4600)
280 COG1474 CDC6 Cdc6-related prot 99.0 2.9E-08 6.3E-13 107.2 19.9 199 159-379 18-248 (366)
281 PRK08451 DNA polymerase III su 99.0 2E-08 4.3E-13 112.6 19.2 188 151-373 7-223 (535)
282 PRK14948 DNA polymerase III su 99.0 2.2E-08 4.8E-13 115.4 20.0 190 151-370 9-224 (620)
283 PRK09111 DNA polymerase III su 99.0 2.3E-08 4.9E-13 114.5 19.8 194 150-372 16-237 (598)
284 TIGR01650 PD_CobS cobaltochela 99.0 1.5E-09 3.3E-14 113.6 8.9 136 191-340 63-234 (327)
285 PRK07399 DNA polymerase III su 99.0 2.5E-08 5.3E-13 105.9 18.3 183 429-646 2-223 (314)
286 PRK06620 hypothetical protein; 99.0 8.9E-09 1.9E-13 103.3 14.2 132 193-360 45-182 (214)
287 PRK13531 regulatory ATPase Rav 99.0 5.3E-09 1.1E-13 114.4 13.1 134 465-614 39-193 (498)
288 PF06068 TIP49: TIP49 C-termin 99.0 4.9E-09 1.1E-13 109.6 12.0 66 430-503 23-90 (398)
289 PHA02244 ATPase-like protein 99.0 2E-08 4.3E-13 106.3 16.7 123 191-329 118-264 (383)
290 PF07726 AAA_3: ATPase family 98.9 2.4E-10 5.2E-15 102.1 1.8 105 467-594 1-130 (131)
291 PRK14954 DNA polymerase III su 98.9 3.7E-08 8E-13 112.9 19.7 183 150-360 8-221 (620)
292 PRK14955 DNA polymerase III su 98.9 2.1E-08 4.5E-13 110.7 16.8 176 150-359 8-220 (397)
293 PRK14950 DNA polymerase III su 98.9 3.1E-08 6.7E-13 114.5 18.8 186 150-370 8-223 (585)
294 PF01078 Mg_chelatase: Magnesi 98.9 5.4E-10 1.2E-14 109.0 3.6 142 430-605 2-205 (206)
295 PRK05707 DNA polymerase III su 98.9 1.2E-08 2.6E-13 108.9 13.8 148 464-636 21-196 (328)
296 PRK04132 replication factor C 98.9 1.8E-08 3.8E-13 118.2 16.2 156 468-649 567-736 (846)
297 smart00382 AAA ATPases associa 98.9 6.6E-09 1.4E-13 96.6 10.2 128 192-326 2-147 (148)
298 COG0593 DnaA ATPase involved i 98.9 4.7E-08 1E-12 105.2 16.7 166 192-370 113-288 (408)
299 smart00763 AAA_PrkA PrkA AAA d 98.9 3.2E-08 7E-13 104.8 15.0 162 432-618 52-330 (361)
300 COG0470 HolB ATPase involved i 98.9 1.4E-08 2.9E-13 109.6 12.4 125 467-612 26-178 (325)
301 PRK09087 hypothetical protein; 98.9 4.2E-08 9E-13 99.4 15.0 139 192-359 44-187 (226)
302 PF07728 AAA_5: AAA domain (dy 98.9 1.1E-09 2.3E-14 102.6 3.2 109 194-317 1-139 (139)
303 PRK08058 DNA polymerase III su 98.9 4E-08 8.6E-13 105.6 15.4 149 429-613 3-180 (329)
304 PRK10636 putative ABC transpor 98.9 7E-09 1.5E-13 121.4 10.3 30 187-216 22-51 (638)
305 smart00350 MCM minichromosome 98.9 3.1E-08 6.6E-13 112.7 15.1 164 432-616 204-401 (509)
306 COG2812 DnaX DNA polymerase II 98.9 1.8E-08 3.9E-13 111.5 12.8 195 151-374 9-226 (515)
307 PRK13407 bchI magnesium chelat 98.8 8.6E-09 1.9E-13 109.6 9.5 159 154-338 4-215 (334)
308 KOG0927 Predicted transporter 98.8 5.8E-08 1.3E-12 105.0 15.5 29 187-215 96-124 (614)
309 PRK13409 putative ATPase RIL; 98.8 2.1E-08 4.6E-13 115.7 13.1 29 189-217 96-124 (590)
310 KOG0745 Putative ATP-dependent 98.8 2.1E-08 4.6E-13 105.2 11.1 99 466-564 227-331 (564)
311 PF02359 CDC48_N: Cell divisio 98.8 6.7E-09 1.4E-13 88.3 6.0 59 1-61 25-85 (87)
312 PRK13549 xylose transporter AT 98.8 2.1E-08 4.5E-13 114.8 12.0 31 187-217 26-56 (506)
313 PF05621 TniB: Bacterial TniB 98.8 1.4E-07 3E-12 97.1 16.6 181 191-381 60-274 (302)
314 COG2607 Predicted ATPase (AAA+ 98.8 4.3E-07 9.4E-12 88.8 19.0 168 151-346 53-246 (287)
315 COG0714 MoxR-like ATPases [Gen 98.8 3E-08 6.5E-13 106.9 12.0 128 191-335 42-199 (329)
316 PRK14971 DNA polymerase III su 98.8 2E-07 4.2E-12 107.7 19.3 185 150-369 9-223 (614)
317 TIGR02031 BchD-ChlD magnesium 98.8 7.2E-08 1.6E-12 111.1 15.5 132 466-616 17-175 (589)
318 KOG1969 DNA replication checkp 98.8 1.3E-07 2.9E-12 105.4 16.7 163 190-371 324-510 (877)
319 PRK11147 ABC transporter ATPas 98.8 2.8E-08 6E-13 116.6 12.1 30 187-216 24-53 (635)
320 PRK09112 DNA polymerase III su 98.8 2.4E-07 5.2E-12 99.8 18.1 180 153-361 18-234 (351)
321 KOG1942 DNA helicase, TBP-inte 98.8 1.2E-07 2.6E-12 94.7 14.3 39 465-503 64-104 (456)
322 TIGR00368 Mg chelatase-related 98.8 4.3E-08 9.4E-13 110.0 12.8 144 428-605 189-394 (499)
323 PF07724 AAA_2: AAA domain (Cd 98.8 2.6E-08 5.5E-13 96.2 9.1 112 191-304 2-130 (171)
324 PF05621 TniB: Bacterial TniB 98.8 2.2E-07 4.7E-12 95.7 15.9 176 466-656 62-273 (302)
325 PRK11331 5-methylcytosine-spec 98.8 1.2E-07 2.6E-12 103.1 14.7 120 192-324 194-356 (459)
326 PRK09700 D-allose transporter 98.7 3.5E-08 7.5E-13 113.2 10.8 30 187-216 26-55 (510)
327 TIGR02030 BchI-ChlI magnesium 98.7 7.4E-08 1.6E-12 102.8 12.5 157 156-338 2-218 (337)
328 PRK10938 putative molybdenum t 98.7 2.4E-08 5.2E-13 114.0 9.4 30 187-216 24-53 (490)
329 CHL00081 chlI Mg-protoporyphyr 98.7 3.9E-08 8.5E-13 104.8 10.1 159 154-338 13-231 (350)
330 PRK06964 DNA polymerase III su 98.7 4.9E-08 1.1E-12 104.1 10.8 133 463-614 19-203 (342)
331 TIGR00602 rad24 checkpoint pro 98.7 1.7E-07 3.6E-12 107.5 15.7 200 427-654 80-330 (637)
332 TIGR03269 met_CoM_red_A2 methy 98.7 5.8E-08 1.3E-12 111.6 12.0 30 187-216 21-50 (520)
333 PRK10762 D-ribose transporter 98.7 4.3E-08 9.4E-13 112.1 10.8 30 187-216 25-54 (501)
334 COG4172 ABC-type uncharacteriz 98.7 8.8E-07 1.9E-11 92.8 18.5 125 462-644 310-435 (534)
335 PRK15439 autoinducer 2 ABC tra 98.7 7.2E-08 1.6E-12 110.4 11.7 30 187-216 32-61 (510)
336 TIGR02655 circ_KaiC circadian 98.7 5.2E-07 1.1E-11 102.2 18.4 78 461-538 259-367 (484)
337 PRK10982 galactose/methyl gala 98.7 5.4E-08 1.2E-12 111.0 10.5 31 186-216 18-48 (491)
338 TIGR00678 holB DNA polymerase 98.7 2.9E-07 6.2E-12 90.9 14.2 142 192-359 14-183 (188)
339 PLN03073 ABC transporter F fam 98.7 4.9E-08 1.1E-12 114.9 9.6 33 183-215 192-226 (718)
340 PRK08116 hypothetical protein; 98.7 4.1E-08 9E-13 102.0 8.0 123 465-604 114-251 (268)
341 PRK05564 DNA polymerase III su 98.7 5.3E-07 1.1E-11 96.6 16.8 169 156-359 2-182 (313)
342 PRK15064 ABC transporter ATP-b 98.7 1.7E-07 3.6E-12 108.0 13.7 30 187-216 22-51 (530)
343 COG1219 ClpX ATP-dependent pro 98.7 5.5E-08 1.2E-12 98.5 8.2 96 193-288 98-202 (408)
344 PF13177 DNA_pol3_delta2: DNA 98.7 1E-07 2.2E-12 91.4 9.9 134 435-602 1-161 (162)
345 PRK06871 DNA polymerase III su 98.7 1.3E-06 2.9E-11 92.6 19.0 128 464-614 23-178 (325)
346 PRK07471 DNA polymerase III su 98.7 1E-06 2.2E-11 95.5 18.4 158 153-338 14-212 (365)
347 PRK09862 putative ATP-dependen 98.7 2.9E-07 6.4E-12 102.8 14.5 143 429-605 189-391 (506)
348 TIGR02633 xylG D-xylose ABC tr 98.7 1.2E-07 2.6E-12 108.5 11.8 31 187-217 22-52 (500)
349 TIGR00602 rad24 checkpoint pro 98.7 3.5E-07 7.7E-12 104.8 15.3 63 150-220 76-138 (637)
350 COG1224 TIP49 DNA helicase TIP 98.7 1.7E-06 3.8E-11 89.2 18.6 63 158-228 39-103 (450)
351 KOG0062 ATPase component of AB 98.6 1E-06 2.3E-11 95.0 17.6 109 186-308 100-259 (582)
352 PRK11608 pspF phage shock prot 98.6 1.4E-07 3.1E-12 101.2 11.0 193 430-652 5-240 (326)
353 COG1221 PspF Transcriptional r 98.6 1.1E-07 2.3E-12 102.2 9.7 201 427-657 74-314 (403)
354 PRK15134 microcin C ABC transp 98.6 9.1E-08 2E-12 110.2 9.6 31 187-217 30-60 (529)
355 TIGR02974 phageshock_pspF psp 98.6 1.1E-07 2.3E-12 102.1 9.5 168 466-652 23-233 (329)
356 PRK11288 araG L-arabinose tran 98.6 1.1E-07 2.3E-12 108.8 10.2 30 187-216 25-54 (501)
357 COG1220 HslU ATP-dependent pro 98.6 3.4E-07 7.4E-12 93.5 12.4 82 253-336 252-346 (444)
358 PF01078 Mg_chelatase: Magnesi 98.6 6.3E-08 1.4E-12 94.6 6.5 46 157-217 2-47 (206)
359 PRK11819 putative ABC transpor 98.6 2.5E-07 5.4E-12 107.0 12.7 30 187-216 28-57 (556)
360 KOG1514 Origin recognition com 98.6 9.6E-07 2.1E-11 98.5 16.4 205 467-703 424-660 (767)
361 KOG2680 DNA helicase TIP49, TB 98.6 1.2E-06 2.6E-11 87.9 15.5 98 572-698 319-429 (454)
362 KOG0991 Replication factor C, 98.6 2.9E-07 6.3E-12 89.3 10.5 94 428-537 24-126 (333)
363 PRK13531 regulatory ATPase Rav 98.6 3E-07 6.6E-12 100.8 11.7 135 190-337 37-192 (498)
364 PRK15424 propionate catabolism 98.6 2E-07 4.4E-12 105.3 10.5 197 428-652 216-465 (538)
365 PRK07993 DNA polymerase III su 98.6 1.7E-06 3.8E-11 92.6 16.9 150 463-638 22-199 (334)
366 TIGR01817 nifA Nif-specific re 98.6 6.7E-07 1.5E-11 103.0 14.5 197 427-653 192-429 (534)
367 KOG0991 Replication factor C, 98.6 6E-07 1.3E-11 87.1 11.4 135 150-313 19-162 (333)
368 PF07726 AAA_3: ATPase family 98.5 2E-08 4.3E-13 89.8 1.2 104 194-317 1-129 (131)
369 TIGR02329 propionate_PrpR prop 98.5 3.1E-07 6.6E-12 104.0 10.7 197 428-652 209-450 (526)
370 PRK08769 DNA polymerase III su 98.5 1E-06 2.3E-11 93.2 13.9 154 464-641 25-206 (319)
371 COG1116 TauB ABC-type nitrate/ 98.5 1.8E-07 3.8E-12 93.2 7.3 109 186-304 23-191 (248)
372 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 2.1E-07 4.5E-12 107.6 9.0 30 187-216 26-55 (552)
373 COG1120 FepC ABC-type cobalami 98.5 2.4E-07 5.2E-12 94.0 8.1 108 187-304 23-199 (258)
374 COG0470 HolB ATPase involved i 98.5 8.2E-07 1.8E-11 95.7 12.8 124 194-335 26-177 (325)
375 PF06068 TIP49: TIP49 C-termin 98.5 4E-06 8.7E-11 88.1 17.0 63 158-228 24-88 (398)
376 PRK10261 glutathione transport 98.5 3.7E-07 8E-12 106.9 10.4 46 456-501 339-388 (623)
377 PRK05707 DNA polymerase III su 98.5 2.2E-06 4.8E-11 91.6 15.2 128 192-338 22-177 (328)
378 PRK05022 anaerobic nitric oxid 98.5 5.5E-07 1.2E-11 102.7 11.4 196 430-655 186-423 (509)
379 TIGR02442 Cob-chelat-sub cobal 98.5 7.4E-07 1.6E-11 104.0 12.0 154 156-337 2-212 (633)
380 PRK06090 DNA polymerase III su 98.5 1.6E-06 3.4E-11 91.7 13.1 129 463-613 23-178 (319)
381 PRK11388 DNA-binding transcrip 98.5 8E-07 1.7E-11 104.7 12.1 195 428-652 322-554 (638)
382 KOG0745 Putative ATP-dependent 98.5 4.8E-07 1E-11 95.3 8.7 96 193-288 227-331 (564)
383 PF00158 Sigma54_activat: Sigm 98.5 3.6E-07 7.8E-12 88.0 7.2 98 466-580 23-144 (168)
384 PRK08699 DNA polymerase III su 98.5 6.7E-07 1.5E-11 95.4 10.0 132 463-613 19-183 (325)
385 KOG0066 eIF2-interacting prote 98.5 5.9E-07 1.3E-11 94.3 9.1 31 186-216 284-314 (807)
386 COG1239 ChlI Mg-chelatase subu 98.4 1.5E-06 3.2E-11 92.6 12.2 161 427-617 13-234 (423)
387 TIGR03015 pepcterm_ATPase puta 98.4 8E-06 1.7E-10 85.5 17.9 173 193-380 44-250 (269)
388 PRK09302 circadian clock prote 98.4 4.7E-06 1E-10 95.4 17.3 78 461-538 269-377 (509)
389 PRK04132 replication factor C 98.4 4E-06 8.7E-11 98.7 16.8 149 192-362 564-726 (846)
390 PRK07399 DNA polymerase III su 98.4 5E-06 1.1E-10 88.4 16.0 176 156-362 2-216 (314)
391 COG1121 ZnuC ABC-type Mn/Zn tr 98.4 5.5E-07 1.2E-11 90.8 8.1 58 241-309 147-204 (254)
392 PRK15429 formate hydrogenlyase 98.4 2.7E-06 5.9E-11 100.9 15.3 197 428-653 373-610 (686)
393 PRK08058 DNA polymerase III su 98.4 2.6E-06 5.7E-11 91.6 13.8 148 157-337 4-180 (329)
394 PRK08116 hypothetical protein; 98.4 1.4E-06 3E-11 90.6 11.2 123 192-328 114-251 (268)
395 PRK08181 transposase; Validate 98.4 4.3E-07 9.3E-12 94.0 6.8 71 465-537 106-180 (269)
396 PRK10820 DNA-binding transcrip 98.4 1.7E-06 3.8E-11 98.7 12.5 197 427-653 200-438 (520)
397 PRK13765 ATP-dependent proteas 98.4 2.1E-06 4.6E-11 98.8 13.1 53 423-490 23-75 (637)
398 COG0606 Predicted ATPase with 98.4 1.2E-07 2.6E-12 102.1 2.4 48 427-489 175-222 (490)
399 cd03216 ABC_Carb_Monos_I This 98.4 4.7E-07 1E-11 87.1 6.0 111 186-307 20-145 (163)
400 PF03215 Rad17: Rad17 cell cyc 98.4 7.3E-06 1.6E-10 92.5 16.2 172 466-653 46-269 (519)
401 COG3842 PotA ABC-type spermidi 98.4 5.8E-07 1.3E-11 95.3 7.0 110 186-305 25-198 (352)
402 PF13173 AAA_14: AAA domain 98.4 2.1E-06 4.6E-11 79.0 9.8 119 466-606 3-126 (128)
403 PRK09183 transposase/IS protei 98.4 6.9E-07 1.5E-11 92.5 7.3 71 465-536 102-176 (259)
404 COG3829 RocR Transcriptional r 98.4 1.5E-06 3.2E-11 95.1 9.9 196 427-652 241-479 (560)
405 KOG2227 Pre-initiation complex 98.4 1.8E-05 3.9E-10 84.8 17.5 179 463-655 173-382 (529)
406 COG1126 GlnQ ABC-type polar am 98.3 1.7E-06 3.7E-11 83.8 8.8 108 187-305 23-197 (240)
407 PRK09183 transposase/IS protei 98.3 1.8E-06 4E-11 89.3 9.6 75 189-264 99-177 (259)
408 PF00158 Sigma54_activat: Sigm 98.3 4.5E-06 9.7E-11 80.4 11.5 118 161-303 2-143 (168)
409 PF13173 AAA_14: AAA domain 98.3 3.6E-06 7.8E-11 77.5 10.3 70 192-263 2-73 (128)
410 COG1221 PspF Transcriptional r 98.3 2.3E-06 5E-11 92.0 10.2 126 153-303 73-223 (403)
411 PF13401 AAA_22: AAA domain; P 98.3 3.5E-06 7.7E-11 77.6 10.2 98 192-301 4-125 (131)
412 PRK08181 transposase; Validate 98.3 1.8E-06 3.9E-11 89.4 8.9 101 191-304 105-209 (269)
413 COG1136 SalX ABC-type antimicr 98.3 2.8E-06 6E-11 84.5 9.9 66 241-323 150-215 (226)
414 PRK06526 transposase; Provisio 98.3 6.2E-07 1.4E-11 92.3 5.4 71 465-537 98-172 (254)
415 TIGR00368 Mg chelatase-related 98.3 6.2E-06 1.3E-10 92.8 13.6 47 156-217 190-236 (499)
416 COG3839 MalK ABC-type sugar tr 98.3 1.7E-06 3.7E-11 91.3 8.3 110 186-305 23-195 (338)
417 COG1125 OpuBA ABC-type proline 98.3 1.3E-06 2.9E-11 86.3 6.8 31 186-216 21-51 (309)
418 cd03222 ABC_RNaseL_inhibitor T 98.3 1.4E-06 3E-11 84.6 7.0 110 187-306 20-134 (177)
419 PRK08939 primosomal protein Dn 98.3 1.1E-06 2.5E-11 92.8 6.8 71 464-536 155-229 (306)
420 COG4619 ABC-type uncharacteriz 98.3 3.1E-06 6.7E-11 78.4 8.6 32 186-217 23-54 (223)
421 COG1118 CysA ABC-type sulfate/ 98.3 2.2E-06 4.8E-11 87.2 8.1 56 241-306 145-200 (345)
422 COG1239 ChlI Mg-chelatase subu 98.3 1.1E-05 2.4E-10 86.0 13.6 160 154-339 13-232 (423)
423 PRK11608 pspF phage shock prot 98.3 8.8E-06 1.9E-10 87.4 13.0 149 157-333 5-184 (326)
424 PRK07952 DNA replication prote 98.3 2E-06 4.4E-11 87.7 7.6 100 466-580 100-205 (244)
425 PF13401 AAA_22: AAA domain; P 98.3 6.1E-06 1.3E-10 76.1 10.2 98 466-578 5-126 (131)
426 TIGR02974 phageshock_pspF psp 98.3 2.6E-05 5.6E-10 83.7 16.5 145 161-333 2-177 (329)
427 PRK05022 anaerobic nitric oxid 98.3 2.1E-05 4.6E-10 89.9 16.7 193 156-376 185-420 (509)
428 KOG0990 Replication factor C, 98.3 5E-06 1.1E-10 84.9 10.2 157 429-620 39-208 (360)
429 COG1124 DppF ABC-type dipeptid 98.3 3.1E-06 6.8E-11 83.7 8.4 55 241-305 149-203 (252)
430 PF01695 IstB_IS21: IstB-like 98.3 7E-07 1.5E-11 86.9 3.9 70 464-535 46-119 (178)
431 PF13177 DNA_pol3_delta2: DNA 98.2 1.5E-05 3.3E-10 76.4 12.9 132 162-324 1-159 (162)
432 COG3829 RocR Transcriptional r 98.2 8.7E-06 1.9E-10 89.2 12.4 153 155-335 242-426 (560)
433 smart00350 MCM minichromosome 98.2 3.4E-06 7.4E-11 96.1 9.7 132 191-339 235-400 (509)
434 COG1122 CbiO ABC-type cobalt t 98.2 1.6E-07 3.5E-12 95.0 -0.9 32 186-217 24-55 (235)
435 PRK12377 putative replication 98.2 2.4E-06 5.3E-11 87.3 7.7 69 466-536 102-175 (248)
436 cd03214 ABC_Iron-Siderophores_ 98.2 2.1E-06 4.4E-11 84.2 6.9 112 186-307 19-161 (180)
437 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 2.4E-06 5.2E-11 80.3 7.1 104 187-306 21-129 (144)
438 PRK06526 transposase; Provisio 98.2 2.5E-06 5.4E-11 87.9 7.7 72 191-264 97-172 (254)
439 PF01637 Arch_ATPase: Archaeal 98.2 2.1E-06 4.5E-11 87.5 6.8 160 465-637 20-228 (234)
440 PRK15429 formate hydrogenlyase 98.2 4E-05 8.6E-10 91.0 18.3 150 155-333 373-554 (686)
441 PF01637 Arch_ATPase: Archaeal 98.2 1.2E-05 2.6E-10 81.8 12.2 181 161-361 2-228 (234)
442 PTZ00111 DNA replication licen 98.2 4.7E-06 1E-10 97.6 10.0 164 432-615 451-657 (915)
443 COG2204 AtoC Response regulato 98.2 9.1E-06 2E-10 89.1 11.6 200 429-657 139-379 (464)
444 cd03228 ABCC_MRP_Like The MRP 98.2 4.3E-06 9.3E-11 81.2 8.1 109 187-307 23-158 (171)
445 COG1484 DnaC DNA replication p 98.2 2.8E-06 6E-11 87.6 7.1 68 464-536 104-179 (254)
446 PF01695 IstB_IS21: IstB-like 98.2 2.2E-06 4.8E-11 83.4 5.9 101 190-303 45-149 (178)
447 PRK06835 DNA replication prote 98.2 2.6E-06 5.6E-11 90.9 6.9 69 466-536 184-258 (329)
448 PRK12377 putative replication 98.2 9.2E-06 2E-10 83.1 10.6 70 192-263 101-175 (248)
449 PRK06921 hypothetical protein; 98.2 7.3E-06 1.6E-10 85.2 10.0 69 191-262 116-188 (266)
450 PRK06964 DNA polymerase III su 98.2 1.3E-05 2.7E-10 85.8 12.1 132 191-338 20-203 (342)
451 PRK06835 DNA replication prote 98.2 9.3E-06 2E-10 86.6 11.0 104 192-307 183-293 (329)
452 COG1484 DnaC DNA replication p 98.2 9.7E-06 2.1E-10 83.6 10.7 72 191-263 104-179 (254)
453 PF09336 Vps4_C: Vps4 C termin 98.2 1.6E-06 3.4E-11 67.9 3.7 36 683-718 27-62 (62)
454 TIGR02031 BchD-ChlD magnesium 98.1 8.3E-06 1.8E-10 94.2 10.5 132 193-339 17-174 (589)
455 KOG2035 Replication factor C, 98.1 0.00011 2.3E-09 73.7 16.7 176 152-361 7-222 (351)
456 cd03246 ABCC_Protease_Secretio 98.1 7.1E-06 1.5E-10 79.8 8.5 108 187-305 23-157 (173)
457 PRK15424 propionate catabolism 98.1 4.6E-06 1E-10 94.4 8.2 150 156-333 217-406 (538)
458 TIGR01817 nifA Nif-specific re 98.1 8E-06 1.7E-10 94.1 10.2 124 155-303 193-340 (534)
459 cd03238 ABC_UvrA The excision 98.1 6E-06 1.3E-10 80.1 7.7 109 186-305 15-150 (176)
460 COG2884 FtsE Predicted ATPase 98.1 1.1E-05 2.5E-10 76.4 9.2 57 241-308 145-201 (223)
461 PF03215 Rad17: Rad17 cell cyc 98.1 8.7E-05 1.9E-09 83.9 18.0 65 151-223 12-76 (519)
462 cd03247 ABCC_cytochrome_bd The 98.1 8.7E-06 1.9E-10 79.6 8.8 110 186-307 22-160 (178)
463 COG1119 ModF ABC-type molybden 98.1 8.1E-06 1.8E-10 80.9 8.4 31 186-216 51-81 (257)
464 COG4608 AppF ABC-type oligopep 98.1 5.5E-06 1.2E-10 83.8 7.3 110 186-305 33-171 (268)
465 PRK06871 DNA polymerase III su 98.1 6E-05 1.3E-09 80.1 15.6 127 192-338 24-178 (325)
466 COG3604 FhlA Transcriptional r 98.1 1.4E-05 3E-10 86.5 10.6 195 427-652 219-456 (550)
467 PF14532 Sigma54_activ_2: Sigm 98.1 2.6E-06 5.5E-11 79.6 4.5 58 466-537 22-82 (138)
468 PRK06921 hypothetical protein; 98.1 4.2E-06 9.1E-11 86.9 6.3 68 465-535 117-188 (266)
469 cd00267 ABC_ATPase ABC (ATP-bi 98.1 4.4E-06 9.5E-11 79.9 6.0 111 186-307 19-143 (157)
470 COG1245 Predicted ATPase, RNas 98.1 5.2E-05 1.1E-09 81.0 14.2 28 190-217 98-125 (591)
471 COG2204 AtoC Response regulato 98.1 2.8E-05 6E-10 85.4 12.5 152 156-335 139-321 (464)
472 cd03230 ABC_DR_subfamily_A Thi 98.1 6.5E-06 1.4E-10 80.1 6.9 110 186-306 20-157 (173)
473 PRK11388 DNA-binding transcrip 98.1 3.6E-05 7.9E-10 90.7 14.5 151 155-333 322-500 (638)
474 KOG1970 Checkpoint RAD17-RFC c 98.1 9.6E-05 2.1E-09 80.8 16.2 171 467-653 112-321 (634)
475 COG1127 Ttg2A ABC-type transpo 98.1 6E-06 1.3E-10 81.3 6.5 30 187-216 29-58 (263)
476 PF05729 NACHT: NACHT domain 98.1 3.3E-05 7.1E-10 74.1 11.5 140 194-340 2-164 (166)
477 cd01120 RecA-like_NTPases RecA 98.1 1.2E-05 2.6E-10 76.8 8.4 72 195-266 2-100 (165)
478 PRK07952 DNA replication prote 98.1 8.6E-06 1.9E-10 83.1 7.6 70 193-264 100-175 (244)
479 cd01120 RecA-like_NTPases RecA 98.1 2.6E-05 5.7E-10 74.5 10.7 110 468-581 2-138 (165)
480 PRK10820 DNA-binding transcrip 98.1 6.1E-05 1.3E-09 86.2 15.4 152 153-332 199-381 (520)
481 PRK08699 DNA polymerase III su 98.1 1.9E-05 4.2E-10 84.3 10.5 130 192-337 21-183 (325)
482 PRK08939 primosomal protein Dn 98.1 1.1E-05 2.5E-10 85.3 8.7 70 191-262 155-228 (306)
483 TIGR02237 recomb_radB DNA repa 98.1 2.1E-05 4.6E-10 79.0 10.3 115 188-302 8-148 (209)
484 PF12775 AAA_7: P-loop contain 98.1 6.6E-06 1.4E-10 85.7 6.7 140 190-340 31-194 (272)
485 COG0606 Predicted ATPase with 98.1 6.6E-06 1.4E-10 88.9 6.7 49 154-217 175-223 (490)
486 PRK05917 DNA polymerase III su 98.0 2.9E-05 6.4E-10 80.6 11.2 120 464-602 18-154 (290)
487 TIGR02915 PEP_resp_reg putativ 98.0 1.2E-05 2.5E-10 90.8 9.1 170 466-654 163-374 (445)
488 PRK13406 bchD magnesium chelat 98.0 2.5E-05 5.3E-10 89.5 11.6 122 466-606 26-173 (584)
489 smart00763 AAA_PrkA PrkA AAA d 98.0 1E-05 2.2E-10 86.1 7.6 81 159-247 52-144 (361)
490 cd03229 ABC_Class3 This class 98.0 8.3E-06 1.8E-10 79.7 6.5 111 187-307 21-164 (178)
491 cd03223 ABCD_peroxisomal_ALDP 98.0 1.7E-05 3.8E-10 76.5 8.7 106 186-305 21-149 (166)
492 COG1131 CcmA ABC-type multidru 98.0 9.7E-06 2.1E-10 85.6 7.2 57 243-309 146-202 (293)
493 COG4525 TauB ABC-type taurine 98.0 1.2E-05 2.7E-10 76.4 7.0 31 186-216 25-55 (259)
494 PRK07993 DNA polymerase III su 98.0 7.3E-05 1.6E-09 80.2 13.8 127 192-337 24-178 (334)
495 KOG2035 Replication factor C, 98.0 0.00011 2.4E-09 73.7 13.8 150 466-634 35-219 (351)
496 PRK09862 putative ATP-dependen 98.0 2E-05 4.4E-10 88.3 9.7 125 189-329 207-391 (506)
497 PRK10923 glnG nitrogen regulat 98.0 2.5E-05 5.4E-10 88.8 10.7 169 466-653 162-372 (469)
498 TIGR02329 propionate_PrpR prop 98.0 1.1E-05 2.4E-10 91.4 7.7 153 155-333 209-391 (526)
499 PRK06090 DNA polymerase III su 98.0 0.00012 2.6E-09 77.6 14.9 127 192-337 25-178 (319)
500 PRK15115 response regulator Gl 98.0 2.9E-05 6.2E-10 87.7 10.9 164 466-652 158-367 (444)
No 1
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-114 Score=932.61 Aligned_cols=655 Identities=61% Similarity=1.030 Sum_probs=610.1
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEG 80 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (757)
|.++++..| |.+.|+.+...++.+..++. ....+.++...|.++.++.|+.+.+.+++.+..+..+.+.++.++..+
T Consensus 37 ~~~~~l~~g--~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~r~~l~~~~~~~~~~~~~p~v~~~~~i~~l~~~~~~~~ 113 (693)
T KOG0730|consen 37 MDKLGLLRG--VLLDGKKRREPVDAVVQDET-SELIGRQTMVSRSNLRLQLGRLLHSSDCPSVKRPARIAVLPVDDTSEG 113 (693)
T ss_pred HhhhcCCcc--eEEECccccCCccceeccCC-ccccchhhheeccchhhcccceecccCCCCccccceeeeeehhhcccc
Confidence 678899999 99999987777664444444 778899999999999999999999998777888888999999998888
Q ss_pred cchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCcccccccCCCCCcccc
Q 004384 81 VTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDV 160 (757)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i 160 (757)
+....++.+.+.++....+++..|+++ ..+..+.|++++..|.. +++++|.+.+.+++......+ ..+++ +++
T Consensus 114 i~~~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~v~~~t~~~~~~~~~~~~~~~-~~~~~-~~~ 186 (693)
T KOG0730|consen 114 IAGELFDVLERPFLLEALRPLVKGDTF---AGLNPAEFKVLELDPSP--QVTPDTELSYLGEPAKREEEE-LPEVG-DDI 186 (693)
T ss_pred chhhhhhhhhhhhhhhhhCccccccch---hhhhhhhhhccccccch--hcCccchhhhcCCCccccccc-ccccc-ccc
Confidence 888888888899998888899999988 33445678888877666 778889988888887655444 46777 899
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHH
Q 004384 161 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNL 240 (757)
Q Consensus 161 ~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l 240 (757)
||+..++..+++++.+|+++|..+.++|+++++++|+|||||||||.+++++|++.+..++.+++++++.++.|++++.+
T Consensus 187 gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~L 266 (693)
T KOG0730|consen 187 GGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNL 266 (693)
T ss_pred chhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcce
Q 004384 241 RKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDR 319 (757)
Q Consensus 241 ~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~ 319 (757)
+.+|+.+...+ |+++||||+|.+++++....+ .++|++.+|+.+|++.....+++|+++||+|+.||++++| |||++
T Consensus 267 R~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRR-gRfd~ 344 (693)
T KOG0730|consen 267 RKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRR-GRFDR 344 (693)
T ss_pred HHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhc-CCCcc
Confidence 99999999998 999999999999999876655 7899999999999999988999999999999999999999 99999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhc
Q 004384 320 EIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM 399 (757)
Q Consensus 320 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (757)
++++..|+..+|.+|++.+++++++.++.++..++..++||+|+|+.++|.+|++++.++
T Consensus 345 ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-------------------- 404 (693)
T KOG0730|consen 345 EVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-------------------- 404 (693)
T ss_pred eeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh--------------------
Confidence 999999999999999999999999998899999999999999999999999999988765
Q ss_pred ccchhhhhhhhccCCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChh
Q 004384 400 AVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 479 (757)
Q Consensus 400 ~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT 479 (757)
+.++|..++....|+++++...+.|+++|+||+|++++|..|++.|.||+++++.|.++|++|++|||||||||||||
T Consensus 405 --~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT 482 (693)
T KOG0730|consen 405 --TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKT 482 (693)
T ss_pred --hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchH
Confidence 456788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 480 LLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 480 ~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
++||++|++++.+|++|+|++++++|+|++|+.++++|++|++.+|||+||||||+++..|+.+. +++.+|++++||
T Consensus 483 ~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLL 559 (693)
T KOG0730|consen 483 LLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLL 559 (693)
T ss_pred HHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998543 378999999999
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGA 639 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~ 639 (757)
++|||++..++|+||||||||+.||+|++||||||+.||||+||.+.|.+||+.+++++++..++|+..||+.|+|||||
T Consensus 560 tEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 560 TEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGA 639 (693)
T ss_pred HHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 004384 640 DITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQT 716 (757)
Q Consensus 640 di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~ 716 (757)
||.++|++|++.|+++.++ ...|+.+||++|++..++|++.+++++|++|.++
T Consensus 640 el~~lCq~A~~~a~~e~i~------------------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIE------------------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred HHHHHHHHHHHHHHHHhcc------------------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 9999999999999999864 3479999999999999999999999999999864
No 2
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-112 Score=897.92 Aligned_cols=556 Identities=49% Similarity=0.853 Sum_probs=510.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
.+++|.||||+++.+..+.+++.. ++||+.|.++|+.|++||||+||||||||+||+++|++++.+|+.++++++++.+
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGv 263 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGV 263 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhccc
Confidence 367899999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCC----CeEEEEEecCCCCCCC
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPNSID 308 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~----~~v~vI~atn~~~~ld 308 (757)
.|+++++++.+|..|....|||+||||||++.+++...+.++++|++.||++.||++... ..|+|||+||+|+.+|
T Consensus 264 SGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 264 SGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred CcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 999999999999999999999999999999999999989999999999999999998754 5799999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc--
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 386 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 386 (757)
|+|||.|||+++|.+..|++.+|.+||+..++++.+..+.++..||..|+||+|+|+.+||.+|+..++++..+....
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~~p~ 423 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSSSPL 423 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhcccCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988876542210
Q ss_pred --------------cchh--h---------------------------hHHHhhhcccchhhhhhhhccCCCCCceeeee
Q 004384 387 --------------EDET--I---------------------------DAEILNSMAVSNEHFQTALGTSNPSALRETVV 423 (757)
Q Consensus 387 --------------~~~~--~---------------------------~~~~~~~~~~~~~~~~~al~~~~p~~~~~~~~ 423 (757)
+.+. + ..+..+.+.+..+||..|+..++|++.++.+.
T Consensus 424 ~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakREGF~ 503 (802)
T KOG0733|consen 424 TKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKREGFA 503 (802)
T ss_pred ccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcccce
Confidence 0000 0 01233456788999999999999999999999
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
.+|+++|+|||++++++.+|..+|.+|+++++.|+.+|+..+.|+||+||||||||.||||+|++.+.+|++|+|++|++
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|||++|+.+|.+|++||.++||||||||+|+|.++|+... ...+.|++||||++|||++.+.+|+|||||||||.|
T Consensus 584 kYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 99999999999999999999999999999999999998753 457899999999999999999999999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhc--cCCCCCccCHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR--KSPVSKDVDLRALAKYTQ--GFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~~~~d~~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
|||+|||||||+.+|+++|+.++|.+||+.+++ +.+++.++|++.+|..+. |||||||..+|++|+..|+++.+..
T Consensus 661 DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~ 740 (802)
T KOG0733|consen 661 DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFE 740 (802)
T ss_pred chhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 889999999999999876 9999999999999999999998752
Q ss_pred HHHHHHhhcCCCcccccccccc--ccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhccCCC
Q 004384 660 DIERERRRRDNPEAMDEDAAED--EVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGIG 724 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~~~~~ 724 (757)
.. +..+.... ....+|..||++|++.++||+++.+-++|+...+++.-+....
T Consensus 741 ~~------------~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~~~ 795 (802)
T KOG0733|consen 741 ID------------SSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTATP 795 (802)
T ss_pred cc------------ccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccccCC
Confidence 21 00000000 0235899999999999999999999999999998876444433
No 3
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.2e-97 Score=871.12 Aligned_cols=701 Identities=51% Similarity=0.866 Sum_probs=616.0
Q ss_pred CcccCCCCCCeEEEE-eCCCceEEEEEEc--CCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEecccccc
Q 004384 1 MDKLQIFRGDTILIK-GKKRKDTICIALA--DDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT 77 (757)
Q Consensus 1 m~~l~~~~g~~v~~~-~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~ 77 (757)
|.+||+..||+|.|. |++ .+++.+|+ +++++.+.|++++.+|.|+|+++||.|+|+++. ++.+..|.+.|....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 102 (733)
T TIGR01243 26 AARLGVEPGDFVEIEKGDR--SVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGDTVTVERAE-VKEAKKVVLAPTQPI 102 (733)
T ss_pred HHhcCCCCCCEEEEecCCC--ceeEEEEecCccccCCCEEeecHHHHhhcCCCCCCeEEEeecC-CCccceEeecccccc
Confidence 678999999999999 444 45777776 457889999999999999999999999999964 778889998885432
Q ss_pred ccCcchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCcccccccCCCCCc
Q 004384 78 IEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGY 157 (757)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 157 (757)
. .+..+..+++..+. .+++..|+.+.+.-......|+|+++.|.+++.++..|.+.+...+.........++++|
T Consensus 103 ~---~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 177 (733)
T TIGR01243 103 R---FGRDFVDYVKEFLL--GKPISKGETVIVPVLEGALPFVVVSTQPAGFVYVTEATEVEIREKPVREEIERKVPKVTY 177 (733)
T ss_pred c---cccchHHHHHHHHc--CCCCCCCCEEEecccCcceeEEEEecCCCCcEEECCCceEEecCCccccccccCCCCCCH
Confidence 1 12234456666664 478999999887544445789999999999999999998877655543222234578899
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhH
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESE 237 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~ 237 (757)
+||+|+++++++|++++.+|+.+|++++++++.+++++||+||||||||+|++++|++++.+++.++++++.+.+.|+.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~ 257 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESE 257 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCc
Q 004384 238 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRF 317 (757)
Q Consensus 238 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf 317 (757)
..++.+|+.+....|++|||||+|.++++++...++.+.+++.+|+.+++++.....++||++||.++.+|+++++++||
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRf 337 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRF 337 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhc
Confidence 99999999999999999999999999998877777888899999999999998888999999999999999999999999
Q ss_pred ceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcc--cccccchhhhHHH
Q 004384 318 DREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD--VIDLEDETIDAEI 395 (757)
Q Consensus 318 ~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 395 (757)
+..+.++.|+..+|.+|++.+.+.+.+..+.++..++..++||+++|+..++++++..++++... ........+....
T Consensus 338 d~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~ 417 (733)
T TIGR01243 338 DREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEV 417 (733)
T ss_pred cEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchh
Confidence 99999999999999999999999998888888999999999999999999999999988876543 1222222233334
Q ss_pred hhhcccchhhhhhhhccCCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCC
Q 004384 396 LNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPG 475 (757)
Q Consensus 396 ~~~~~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppG 475 (757)
.....++.++|..++....|+..++...+.|.++|++++|++.+|+.|.+.+.+|+.+++.+..+++.+++|+|||||||
T Consensus 418 ~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppG 497 (733)
T TIGR01243 418 LKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPG 497 (733)
T ss_pred cccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCC
Confidence 45567889999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHH
Q 004384 476 CGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 555 (757)
Q Consensus 476 tGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~ 555 (757)
||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||||++++.|+... .....++++
T Consensus 498 tGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~ 575 (733)
T TIGR01243 498 TGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIV 575 (733)
T ss_pred CCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887542 234678999
Q ss_pred HHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCC
Q 004384 556 NQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 635 (757)
Q Consensus 556 ~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g 635 (757)
++||++||++...++++||+|||+|+.||+|++||||||++|+||+||.++|.+||+.++++.++..++|+..+|+.++|
T Consensus 576 ~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g 655 (733)
T TIGR01243 576 NQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEG 655 (733)
T ss_pred HHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCC
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 004384 636 FSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQ 715 (757)
Q Consensus 636 ~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~ 715 (757)
|||+||.++|++|++.|+++.+........ .. ..........|+++||.+|+++++||+++++++.|++|.+
T Consensus 656 ~sgadi~~~~~~A~~~a~~~~~~~~~~~~~------~~--~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~ 727 (733)
T TIGR01243 656 YTGADIEAVCREAAMAALRESIGSPAKEKL------EV--GEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAK 727 (733)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhccchhh------hc--ccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999987653210000 00 0000012347999999999999999999999999999999
Q ss_pred HHhh
Q 004384 716 TLQQ 719 (757)
Q Consensus 716 ~~~~ 719 (757)
+|..
T Consensus 728 ~~~~ 731 (733)
T TIGR01243 728 ELKR 731 (733)
T ss_pred Hhcc
Confidence 9953
No 4
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-86 Score=719.16 Aligned_cols=615 Identities=35% Similarity=0.594 Sum_probs=495.5
Q ss_pred hhhHHHHhhHhhhhcCccccCCcEEEEec------------------CceeEEEEEEEecCC---ceEEECCCceEEecC
Q 004384 83 GNLFDAFLRPYFTEAYRPVRKGDLFLVRG------------------GMRSVEFKVIETDPG---EYCVVAPDTEIFCEG 141 (757)
Q Consensus 83 ~~~~~~~l~~~~~~~~~~v~~g~~~~~~~------------------~~~~~~f~v~~~~~~---~~~~~~~~t~~~~~~ 141 (757)
.+..+..++.||+ +.|.++.||+|++.. ....++|+|++.+|. .+++.+++|.++..+
T Consensus 303 ~~~~~~~l~~~f~-t~ril~~gdvf~i~~~~~~~~~~~~~~l~l~~~~d~~v~~~v~~~ep~~~~~~~i~~~~T~lv~~~ 381 (953)
T KOG0736|consen 303 AGNIDVVLKKHFK-TPRILQSGDVFCIPINSQMANLNGYPELPLWRETDFLVYKKVIEAEPGNESAYIIDTNHTSLVLVG 381 (953)
T ss_pred hhHHHHHHHHHhC-cceeeecCCEEEEeehhhhcccccchhhHhhhhccceeEEEEeecCCCccceEEEcCCCceEEEcc
Confidence 3556778899997 678999999998732 124678999999885 356667778887665
Q ss_pred CCCccc-ccccCCC--CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 142 EPIKRE-DEDRLDE--VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 142 ~~~~~~-~~~~~~~--~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
....+. -.+.... ..+-..-+.+..+..+..++.- -..| ...++.-...+||+|+|||||||+++++|.+++.
T Consensus 382 ~~ss~~~~lps~~~~l~n~~~~~~~~~~~~~l~~vl~p-~~~~---s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~ 457 (953)
T KOG0736|consen 382 ATSSRVPLLPSSLSTLWNSLSPPGLEAKVLELVAVLSP-QKQP---SGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL 457 (953)
T ss_pred ccccCCcCCChhhHHHhccCCCccchHHHHHHHHHhCc-ccCc---chhccccceEEEEeCCCCCChHHHHHHHHHHhCC
Confidence 443320 0000000 1222234444444434444332 1222 1223344567999999999999999999999999
Q ss_pred eEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhh---cccCCCeE
Q 004384 219 FFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD---GLKSRAHV 295 (757)
Q Consensus 219 ~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~---~~~~~~~v 295 (757)
+++.++|.++.....+..+.++..+|+.++...|+|||+-++|.+.-+... ..+.++...+..++. .......+
T Consensus 458 h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg---ged~rl~~~i~~~ls~e~~~~~~~~~ 534 (953)
T KOG0736|consen 458 HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLSNEDFKFSCPPV 534 (953)
T ss_pred ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC---chhHHHHHHHHHHHhcccccCCCCce
Confidence 999999999999999999999999999999999999999999998855433 233455554444443 33466789
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHH
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQ 375 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~ 375 (757)
+|+++|+..+.+++.+++ .|..+|.++.|++++|.+||+.++....+..++.+..++.++.||+.+++.+++......
T Consensus 535 ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 535 IVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLA 612 (953)
T ss_pred EEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHH
Confidence 999999999999999998 677799999999999999999999999999999999999999999999999998776332
Q ss_pred HHH---hhcccccccchhhhHHHhhhcccchhhhhhhhccCCCCCcee-eeeeccCCccccccchhhHHHHhhhhccCCC
Q 004384 376 CIR---EKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE-TVVEVPNVSWEDIGGLENVKRELQETVQYPV 451 (757)
Q Consensus 376 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~~-~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~ 451 (757)
+.. +....-...++.-.........++.+||.+++.+.+.+.... ....+|+++|+||||++++|..|.+.|..|+
T Consensus 613 ~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL 692 (953)
T KOG0736|consen 613 AKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPL 692 (953)
T ss_pred HHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcc
Confidence 222 211000011111111122346688999999988664332222 2346899999999999999999999999999
Q ss_pred CChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEe
Q 004384 452 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFD 531 (757)
Q Consensus 452 ~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iD 531 (757)
+|+++|.. |++++.|||||||||||||.+|||+|.++..+|++|+|++|+++|+|+||+++|++|++||..+|||||||
T Consensus 693 ~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 693 KHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred cChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 99999987 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCeEEEEeeCCCCCCCCccccCCCccceEEEecCC-CHHHHH
Q 004384 532 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP-DEDSRH 608 (757)
Q Consensus 532 Eid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p-~~~~r~ 608 (757)
|+|+++++||.+ +++++.++|+++|||.||||+. ..+.|+|||||||||.|||||+||||||+.+|++++ |.+.+.
T Consensus 772 ELDSlAP~RG~s-GDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~ 850 (953)
T KOG0736|consen 772 ELDSLAPNRGRS-GDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKL 850 (953)
T ss_pred cccccCccCCCC-CCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHH
Confidence 999999999987 6778999999999999999998 467899999999999999999999999999999988 678899
Q ss_pred HHHHHhhccCCCCCccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccc
Q 004384 609 QIFKACLRKSPVSKDVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIK 687 (757)
Q Consensus 609 ~Il~~~l~~~~~~~~~d~~~la~~~-~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 687 (757)
.||+...+++.++.++|+.++|+.+ ..|||||+.++|.+|.+.|++|.++..... .+.+++.+.....|+
T Consensus 851 ~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g---------~~~~~e~~~~~v~V~ 921 (953)
T KOG0736|consen 851 RVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESG---------TISEEEQESSSVRVT 921 (953)
T ss_pred HHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhc---------cccccccCCceEEEE
Confidence 9999999999999999999999987 579999999999999999999987754321 111222233456799
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 004384 688 AAHFEESMKFARRSVSDADIRKYQAFAQTLQ 718 (757)
Q Consensus 688 ~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 718 (757)
++||.++++++.||+|.+++.+|+..+.+|.
T Consensus 922 ~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 922 MEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999884
No 5
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-72 Score=604.88 Aligned_cols=499 Identities=36% Similarity=0.569 Sum_probs=424.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC----CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~----~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
....+|||+||+|||||.|+++++.+.. +++..++|+.+.........+.++.+|..+..+.|+|+++|++|.|+.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~ 508 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLAS 508 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhc
Confidence 3456799999999999999999999874 456789999887766666677889999999999999999999999987
Q ss_pred CCCCC---chHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC
Q 004384 266 KREKT---HGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 341 (757)
Q Consensus 266 ~~~~~---~~~~~~~~~~~Ll~~l~~~~~-~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 341 (757)
..+.. .+....++...+...+..+.. +..+.+|++.+....++|.|.++++|...+.++.|+..+|.+||...+++
T Consensus 509 ~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 509 ASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred cCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 33222 223344444444455544433 34578999999999999999999999999999999999999999987765
Q ss_pred CCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCCCCCcee
Q 004384 342 MKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE 420 (757)
Q Consensus 342 ~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~~ 420 (757)
... ....+++.++..|+||...|+..++.+|...++...... ....++.++|.++++.+.|.+++.
T Consensus 589 ~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~-------------~~klltke~f~ksL~~F~P~aLR~ 655 (952)
T KOG0735|consen 589 NLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN-------------GPKLLTKELFEKSLKDFVPLALRG 655 (952)
T ss_pred hhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc-------------CcccchHHHHHHHHHhcChHHhhh
Confidence 432 122356669999999999999999999988777433221 112578899999999999999988
Q ss_pred eeeecc-CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCc
Q 004384 421 TVVEVP-NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 499 (757)
Q Consensus 421 ~~~~~~-~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~ 499 (757)
.....+ .+.|+|++|+.++|+.|++.+.||.+++..|.+.+++.+.|+|||||||||||.||.++|..++..|++|+|+
T Consensus 656 ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGP 735 (952)
T KOG0735|consen 656 IKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGP 735 (952)
T ss_pred ccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCH
Confidence 655444 4999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 500 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
++++||+|.+|+++|.+|.+|+...|||+||||+|+++++||.+ ..+..+|++||||++|||.+..++|+|+|||.|
T Consensus 736 ElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD---sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsR 812 (952)
T KOG0735|consen 736 ELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD---STGVTDRVVNQLLTELDGAEGLDGVYILAATSR 812 (952)
T ss_pred HHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC---CCCchHHHHHHHHHhhccccccceEEEEEecCC
Confidence 99999999999999999999999999999999999999999864 467899999999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
||.||||++||||||+.+++|+|++.+|.+|++....+..++.++|++.+|.+|+||||||++.++..|.+.|+++.+.+
T Consensus 813 pdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~ 892 (952)
T KOG0735|consen 813 PDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKR 892 (952)
T ss_pred ccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HHHHHHhhcCCCccccccccccccccccHHHHHHHHh--hcCCCCCHHHHHHHHHHHHHHhhcc
Q 004384 660 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMK--FARRSVSDADIRKYQAFAQTLQQSR 721 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~--~~~~s~~~~~~~~y~~~~~~~~~~~ 721 (757)
..+ ++..+.++...+..... +.+||.+.-+-..|.+...+|..++
T Consensus 893 ~~~-----------------~~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 939 (952)
T KOG0735|consen 893 EDE-----------------EGVVPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLSDE 939 (952)
T ss_pred cCc-----------------cccCCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcCcc
Confidence 311 12233355444444443 6688888777777777666666544
No 6
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-66 Score=583.43 Aligned_cols=489 Identities=56% Similarity=0.918 Sum_probs=449.2
Q ss_pred ccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEE
Q 004384 176 LPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSII 255 (757)
Q Consensus 176 ~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il 255 (757)
+|+.+++.++.+++.++.+++++||||+|||++++.++.. +..+..+++++...++.+..+..++.+|..+....|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 4678899999999999999999999999999999999999 666688899999999999999999999999999999999
Q ss_pred EEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHH
Q 004384 256 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 335 (757)
Q Consensus 256 ~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 335 (757)
++||++.+.+.+.........+++.+++..++++. +..+++++.++.+..+++++++++||+..+.+..|+...+.+|+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHH
Confidence 99999999999877666788899999999999998 44488889999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCCC
Q 004384 336 RIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNP 415 (757)
Q Consensus 336 ~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p 415 (757)
..+...+....+.++..++..+.||.++++..++.++.....++.. ........++.+++..++....|
T Consensus 160 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 160 QIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----------DLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----------ccCcccccccHHHHHHHHHhcCc
Confidence 9999998888888899999999999999999999999887776642 01122345677888888988887
Q ss_pred CCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 416 SALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 416 ~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
+ +......+.+.|.+++|++.+|+.+++.+.+++.+++.|...++.+++|+|||||||||||+||+++|.+++.+|+.
T Consensus 229 ~--~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 229 S--RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred c--cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 6 56667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 496 VKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 496 v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
++++++.++|+|+++++++.+|..|++..||||||||+|++++.|+.+.+ +...+++++||++||+++...+|+||+
T Consensus 307 v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~---~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED---GSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc---hHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 99999999999999999999999999999999999999999999976532 234799999999999999999999999
Q ss_pred eCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCC--CCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 576 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP--VSKDVDLRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 576 tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
|||+|+.+|+|++||||||++|+||+||.++|.+||+.+++... +..++|+..+++.++||||+||.++|++|++.++
T Consensus 384 aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~ 463 (494)
T COG0464 384 ATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEAL 463 (494)
T ss_pred cCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999544 4678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 004384 654 RENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAF 713 (757)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~ 713 (757)
++.. ...+|++||..|++.++||++ |++|
T Consensus 464 ~~~~-------------------------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 464 REAR-------------------------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred HHhc-------------------------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 9874 237999999999999999998 8887
No 7
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-60 Score=481.94 Aligned_cols=253 Identities=47% Similarity=0.816 Sum_probs=243.6
Q ss_pred eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 421 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 421 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
...+.|+++++||||+++..++|++.|+.|+++|++|..+|+.||+|+|||||||||||+||||+|++.++.|+.|.||+
T Consensus 141 ~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE 220 (406)
T COG1222 141 EVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE 220 (406)
T ss_pred eeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
|..||+|+..+.+|++|+.|+..+||||||||||+++.+|..+..+.+...+|.+-+||++|||+...++|=||+||||+
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 99999999999999999999999999999999999999998876666777899999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 660 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 660 (757)
+.||||+|||||||+.|+||+||.+.|.+||+.|.+++.+..++|++.||+.++|||||||+++|.||++.|+|+.
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~---- 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER---- 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHHhhcC
Q 004384 661 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 699 (757)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~ 699 (757)
-..||++||.+|.+++-
T Consensus 377 ----------------------R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 377 ----------------------RDEVTMEDFLKAVEKVV 393 (406)
T ss_pred ----------------------cCeecHHHHHHHHHHHH
Confidence 23799999999999873
No 8
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-57 Score=471.84 Aligned_cols=568 Identities=29% Similarity=0.450 Sum_probs=422.7
Q ss_pred EEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEecccc--------ccccCcchh-hHHHHhhH
Q 004384 22 TICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPID--------DTIEGVTGN-LFDAFLRP 92 (757)
Q Consensus 22 ~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~--------~~~~~~~~~-~~~~~l~~ 92 (757)
.++...+...+.+|.|+++..+|+|+++++|+.|.|.|+........+....++ .+...+..+ ...++.+.
T Consensus 47 ~~Fs~~~~~~i~~g~i~fs~~qR~wa~~Sl~qev~V~~~~~~~~~~~l~~m~le~dF~~k~~~~sep~Dad~ma~qF~~~ 126 (744)
T KOG0741|consen 47 YVFSTEFTPSIPPGNIGFSLPQRKWAGWSLGQEVEVKPFTFDGSCDYLGSMTLEIDFLNKKNTTSEPFDADEMAKQFKRQ 126 (744)
T ss_pred EEEEeeccCCCCCceeccchhhhhhhhcccCceeEEEecccCcccccceeEEEEehhhhcCCCCCCCCCHHHHHHHHHHH
Confidence 455555667889999999999999999999999999987432221222222111 112223222 22333333
Q ss_pred hhhhcCccccCCcEEEEecC-ceeEEEEEEEec---C--------------CceEEECCCceEEecCCCCc---------
Q 004384 93 YFTEAYRPVRKGDLFLVRGG-MRSVEFKVIETD---P--------------GEYCVVAPDTEIFCEGEPIK--------- 145 (757)
Q Consensus 93 ~~~~~~~~v~~g~~~~~~~~-~~~~~f~v~~~~---~--------------~~~~~~~~~t~~~~~~~~~~--------- 145 (757)
|- ..++.+|+.+.+.-. ...+.++|..++ | -.++.+..+|.|.+......
T Consensus 127 y~---~q~fsvgQ~~~f~f~~~~~l~l~v~~ie~~D~~~~~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~ 203 (744)
T KOG0741|consen 127 YN---SQAFSVGQQLVFEFNGNKLLGLKVKDIEAFDPGISEGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSK 203 (744)
T ss_pred hc---CcccCCccEEEEEecCceEeeeEEEEEeeeccccccCCcccccccceeeeEeecCcEEEEEeccCcceEeecccc
Confidence 32 356889998765432 234566666653 3 13577888888754322210
Q ss_pred -ccccc--cCCCCCccc--ccChHHHHHHH-HHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe
Q 004384 146 -REDED--RLDEVGYDD--VGGVRKQMAQI-RELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF 219 (757)
Q Consensus 146 -~~~~~--~~~~~~~~~--i~G~~~~~~~i-~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~ 219 (757)
+.... .-+++.|++ |||+++++..| +.+.......|++.+++|+++-+|+|||||||||||.+||.|...+++.
T Consensus 204 ~k~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr 283 (744)
T KOG0741|consen 204 TKPASNSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR 283 (744)
T ss_pred ccchhccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC
Confidence 11111 113444544 89999999998 7788877888999999999999999999999999999999999999764
Q ss_pred -EEEEechhhhhhccchhHHHHHHHHHHHHhc--------CCeEEEEcccccccCCCCCCc--hHHHHHHHHHHHHHhhc
Q 004384 220 -FFCINGPEIMSKLAGESESNLRKAFEEAEKN--------APSIIFIDEIDSIAPKREKTH--GEVERRIVSQLLTLMDG 288 (757)
Q Consensus 220 -~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~--------~p~il~iDEid~l~~~~~~~~--~~~~~~~~~~Ll~~l~~ 288 (757)
...|||+++.++|+|+++++++.+|.+|... .-.||++||||++|.+|++.. ..+...+++||++.||+
T Consensus 284 ePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG 363 (744)
T KOG0741|consen 284 EPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG 363 (744)
T ss_pred CCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc
Confidence 6789999999999999999999999998753 346999999999999998754 35778999999999999
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC----CCCchhhhHHhHhcCCCchhH
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----LSDDVDLERIAKDTHGYVGAD 364 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~----l~~~~~l~~la~~t~g~~~~d 364 (757)
..+-++++|||.||+.+.||.+|.|||||..++++..||+..|++||++|+++|. +..++|+..+|..|.+|+|++
T Consensus 364 VeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAE 443 (744)
T KOG0741|consen 364 VEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAE 443 (744)
T ss_pred HHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhH
Confidence 9999999999999999999999999999999999999999999999999998875 567899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCCCCCcee-----eeeeccCCccccccchhhH
Q 004384 365 LAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRE-----TVVEVPNVSWEDIGGLENV 439 (757)
Q Consensus 365 l~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~~-----~~~~~~~~~~~~i~g~~~~ 439 (757)
++.+++.|...++.+....- .....+....+.+.++..||..++..++|+.... .......+.|..- +
T Consensus 444 leglVksA~S~A~nR~vk~~--~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~-----v 516 (744)
T KOG0741|consen 444 LEGLVKSAQSFAMNRHVKAG--GKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPP-----V 516 (744)
T ss_pred HHHHHHHHHHHHHHhhhccC--cceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeeccc-----H
Confidence 99999999988887765432 1133444556788999999999999998874321 1111222444331 1
Q ss_pred HHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchh----HHHHH
Q 004384 440 KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESE----ANVRE 515 (757)
Q Consensus 440 k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e----~~i~~ 515 (757)
-+.+.+ ........+....++-.++||+||||+|||+||..+|..+++||+.+-.++-. +|-+| ..+..
T Consensus 517 ~~il~~----G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k 589 (744)
T KOG0741|consen 517 TRILDD----GKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKK 589 (744)
T ss_pred HHHHhh----HHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHH
Confidence 111110 00001112222345556799999999999999999999999999998766533 34333 46899
Q ss_pred HHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC-CCeEEEEeeCCCCCCCCc-cccCCCcc
Q 004384 516 IFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDIIDP-ALLRPGRL 593 (757)
Q Consensus 516 lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~tTn~~~~ld~-allrpgRf 593 (757)
+|+.|++++-+||++|+|+.|+..-.-+ ...++-++..|+..|...+. .++.+|++||++.+.|.. .++. .|
T Consensus 590 ~F~DAYkS~lsiivvDdiErLiD~vpIG----PRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F 663 (744)
T KOG0741|consen 590 IFEDAYKSPLSIIVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CF 663 (744)
T ss_pred HHHHhhcCcceEEEEcchhhhhcccccC----chhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hh
Confidence 9999999999999999999998754322 23567777788888877654 458999999999887765 4555 89
Q ss_pred ceEEEecCCCH-HHHHHHHH
Q 004384 594 DQLIYIPLPDE-DSRHQIFK 612 (757)
Q Consensus 594 ~~~i~~~~p~~-~~r~~Il~ 612 (757)
+..+++|..+. ++..+++.
T Consensus 664 ~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 664 SSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred hheeecCccCchHHHHHHHH
Confidence 99999997654 55555554
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-56 Score=454.76 Aligned_cols=284 Identities=43% Similarity=0.694 Sum_probs=257.8
Q ss_pred eeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 422 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 422 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
+...|+++|+||.|+.++|+.|+++|..|+..|+.|+. .++|.+|+|++||||||||+||||+|.+|+..|+.|+.+.+
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 34568899999999999999999999999999999987 56889999999999999999999999999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC----CCeEEEEeeC
Q 004384 502 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGAT 577 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~----~~~v~vi~tT 577 (757)
.+||-|+||+.+|-+|+.|+.++|++|||||||+|+.+|+.+ +.+++++|+.++||.+|||+.. .+.|+|+|||
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999999886 3467899999999999999864 3459999999
Q ss_pred CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 578 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 578 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
|.||.||.|++| ||.+.||+|+||.++|..+++..++..+++.+++++.||+.++||||+||.++|++|++.++|+.+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred CCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 004384 658 EKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 719 (757)
........ ...+.|+...+|+.+||+.|+++++||++..++.+|++|...|+.
T Consensus 438 ~g~~~~ei---------~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 438 AGLTPREI---------RQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred hcCCcHHh---------hhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 54321110 011112223579999999999999999999999999999999964
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-51 Score=402.33 Aligned_cols=294 Identities=34% Similarity=0.627 Sum_probs=258.2
Q ss_pred eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 421 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 421 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
.+.+.|++.|+|+.|++.+|+.|++++..|++.|.+|.. +..|.+|+||||||||||+.||+|+|.+.+..|++|+.++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 356789999999999999999999999999999999987 6788999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCeEEEEeeCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 579 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~tTn~ 579 (757)
|.++|.|++|+.++.+|+.||.+.|+||||||||++++.|+.+. +.+.+|+..+||.+|.|+- +.++|+|++|||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE---seasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE---SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc---hHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999987653 4578999999999999985 4568999999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC-CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
||.||.|+.| ||+++||+|+|+..+|..+|+.++...+. -.+.|+..|+++|+||||+||.-++++|.+..+|....
T Consensus 279 Pw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred chhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhh
Confidence 9999999999 99999999999999999999999988753 35679999999999999999999999999999998765
Q ss_pred HHHHHHHhhcC-----------CCcc---------ccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 004384 659 KDIERERRRRD-----------NPEA---------MDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQ 718 (757)
Q Consensus 659 ~~~~~~~~~~~-----------~~~~---------~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 718 (757)
...-....... .++. ++...+.-..++||+.||.+++...+|.++.+++.+.++|.+.|+
T Consensus 357 AthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFG 436 (439)
T KOG0739|consen 357 ATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFG 436 (439)
T ss_pred hhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhc
Confidence 44322211111 0111 011222234678999999999999999999999999999999998
Q ss_pred hc
Q 004384 719 QS 720 (757)
Q Consensus 719 ~~ 720 (757)
++
T Consensus 437 qE 438 (439)
T KOG0739|consen 437 QE 438 (439)
T ss_pred cC
Confidence 75
No 11
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-48 Score=395.27 Aligned_cols=247 Identities=51% Similarity=0.854 Sum_probs=229.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
+..++++|+||||+++|++.|+|.+++|+.+|++|+.+||.||+|||||||||||||.||+++|++.++.|+.+.+++++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElV 222 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELV 222 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHH---HHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV---ERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~---~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
.+|.|+....++.+|+.|+...||||||||||++..++-.....- -+|..-+|++.||++...++|-||+|||+++.
T Consensus 223 qKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 223 QKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 999999999999999999999999999999999998875433222 24556678889999999999999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
+||+|.||||||+.|++|.|+.+.|.+||++|+++|.+.++++++.++..++|++|+|++++|.+|.+.++++..
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~R----- 377 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRERR----- 377 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhcc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccC
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
..++++||.+|..++
T Consensus 378 ------------~~Vt~~DF~~Av~KV 392 (406)
T COG1222 378 ------------DEVTMEDFLKAVEKV 392 (406)
T ss_pred ------------CeecHHHHHHHHHHH
Confidence 347888898887665
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-49 Score=378.19 Aligned_cols=252 Identities=42% Similarity=0.747 Sum_probs=240.1
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
.+|+-+++-++|++...+.+++.+..|.+||++|..+|+..|+|+|||||||+|||.||+++|+...+.|+.|+|+++..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvq 219 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 219 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|+|+..+.+|++|-.|+..+|+|||.||||++...|..+.+..++...|.+-+||++|||++..+++-||+||||.+.|
T Consensus 220 k~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridil 299 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 299 (404)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccc
Confidence 99999999999999999999999999999999999998776666677889999999999999999999999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
|||++||||+|+.|+||+|+.++|.+|++.+.+++.+...+|+..+|+...|.|||+++.+|.+|++.|+++.
T Consensus 300 d~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------- 372 (404)
T KOG0728|consen 300 DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------- 372 (404)
T ss_pred cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 701 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 701 (757)
...+|++||+-|+.++-..
T Consensus 373 -------------------rvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 -------------------RVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred -------------------hccccHHHHHHHHHHHHhc
Confidence 2379999999999887433
No 13
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-48 Score=374.08 Aligned_cols=252 Identities=44% Similarity=0.752 Sum_probs=239.4
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
+.|++++.|++|++-.|+++++.++.|+.+.+++++.|+.||+|+|||||||||||+|||++|+.....|+.|.|+++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|.|+..+.+|.+|..|+..+|+||||||||+++.+|-....+++....|++-+||++|||+....+|-||+||||.+.|
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 99999999999999999999999999999999999997765566677889999999999999999999999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
|||++||||+|+.|+||+||..+++-+|.....++.+..++|++.+....+..||+||.++|++|++.|++++
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n------- 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN------- 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc-CCC
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA-RRS 701 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~-~~s 701 (757)
.-.|...||++|.+.. +++
T Consensus 381 -------------------ryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 381 -------------------RYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred -------------------ceeeeHHHHHHHHHhhcCCc
Confidence 2368899999998775 443
No 14
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-48 Score=408.44 Aligned_cols=243 Identities=40% Similarity=0.710 Sum_probs=230.6
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
.+++|+|+-|.+++|++|.+.+.+ +++|..|.++|-+.|+|+||.||||||||+||+|+|++.+.||+...|+++-.+|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 478999999999999999999886 7899999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
||...+.+|.+|+.|++.+||||||||||++.++|.... ....+..+||||.+|||+..+.+||||+|||+|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~---~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSD---QHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccH---HHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 999999999999999999999999999999999997652 22789999999999999999999999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
||+||||||++|.+|.||...|.+||+.|+++.+.+.++|+.-||+-|.|||||||.|+++.|+..|..++
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|+|.|++-|-.++
T Consensus 526 -----------------a~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 526 -----------------AEMVTMKHLEFAKDRI 541 (752)
T ss_pred -----------------cccccHHHHhhhhhhe
Confidence 3479999999998876
No 15
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=8.9e-46 Score=408.80 Aligned_cols=398 Identities=26% Similarity=0.410 Sum_probs=305.9
Q ss_pred CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHH
Q 004384 251 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 330 (757)
Q Consensus 251 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~ 330 (757)
.|.++++.|+|..+.+. .+.+.|.++....+...+.+|+.+.+ ..+++.|.+ +-..+++|.|+.++
T Consensus 81 ~~~~~vl~d~h~~~~~~---------~~~r~l~~l~~~~~~~~~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~e 146 (489)
T CHL00195 81 TPALFLLKDFNRFLNDI---------SISRKLRNLSRILKTQPKTIIIIASE--LNIPKELKD---LITVLEFPLPTESE 146 (489)
T ss_pred CCcEEEEecchhhhcch---------HHHHHHHHHHHHHHhCCCEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHH
Confidence 47899999999887321 12333434333333344444444432 457788875 55778999999999
Q ss_pred HHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhh
Q 004384 331 RLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTA 409 (757)
Q Consensus 331 r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 409 (757)
..++++........ .++..++.+++.+.|++..++..++..+.... ..+. .+.+.. . .+.-.+.
T Consensus 147 i~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~-----~~~~--~~~~~~-i-------~~~k~q~ 211 (489)
T CHL00195 147 IKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIATY-----KTID--ENSIPL-I-------LEEKKQI 211 (489)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCCC--hhhHHH-H-------HHHHHHH
Confidence 99999877654332 24456899999999999999988877643210 0010 000000 0 0000011
Q ss_pred hccCCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh
Q 004384 410 LGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 489 (757)
Q Consensus 410 l~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~ 489 (757)
+.+. ..-+ ...+..+|++++|++.+|+.+.+..... ......+|+.+++|+|||||||||||++|+++|+++
T Consensus 212 ~~~~---~~le--~~~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 212 ISQT---EILE--FYSVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred Hhhh---cccc--ccCCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 1110 0000 1124678999999999999998754321 234466789999999999999999999999999999
Q ss_pred CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCC
Q 004384 490 QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK 569 (757)
Q Consensus 490 ~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 569 (757)
+.+|+.++++.+.++|+|+++++++.+|+.|+...||||||||||.++..+... ..++...+++++|++.|+. ...
T Consensus 284 ~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~ 359 (489)
T CHL00195 284 QLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKS 359 (489)
T ss_pred CCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCC
Confidence 999999999999999999999999999999999999999999999998765432 2245678999999999985 346
Q ss_pred eEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC--CCccCHHHHHHHcCCCCHHHHHHHHHH
Q 004384 570 TVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV--SKDVDLRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 570 ~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--~~~~d~~~la~~~~g~sg~di~~~~~~ 647 (757)
+|+||+|||+++.||++++||||||+.++|++|+.++|.+||+.++++... ..+.|+..+|+.|+||||+||+++|.+
T Consensus 360 ~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~e 439 (489)
T CHL00195 360 PVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIE 439 (489)
T ss_pred ceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999988643 247899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHHHHHH
Q 004384 648 ACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS--VSDADIRKYQAFAQT 716 (757)
Q Consensus 648 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s--~~~~~~~~y~~~~~~ 716 (757)
|+..|+.+. ..++.+||..|++++.|+ +..++|+.+++|...
T Consensus 440 A~~~A~~~~---------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 440 AMYIAFYEK---------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred HHHHHHHcC---------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 998887542 368999999999999996 578899999999875
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-47 Score=368.77 Aligned_cols=268 Identities=38% Similarity=0.704 Sum_probs=247.7
Q ss_pred CCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc
Q 004384 413 SNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 492 (757)
Q Consensus 413 ~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~ 492 (757)
..|+...-.+.+.|++++.|++|..+..+.|++.++.|+.+|+.|..+|+.|++|+|||||||||||.+|+++|+..+..
T Consensus 159 idpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdac 238 (435)
T KOG0729|consen 159 IDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDAC 238 (435)
T ss_pred CCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCce
Confidence 34555555566789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEE
Q 004384 493 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 572 (757)
Q Consensus 493 ~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 572 (757)
|+.|-|++|..+|+|+..+.+|++|+.|+....|||||||||++.+.|-.+..+.+....|.+-+++++|||+..+.++-
T Consensus 239 firvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnik 318 (435)
T KOG0729|consen 239 FIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIK 318 (435)
T ss_pred EEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999876644445567788889999999999999999
Q ss_pred EEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 573 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 573 vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a 652 (757)
|++|||||+.||||++||||+|+.++|.+||.+.|.+||+.|.+.+.+..++.++.+|..+.+-+|++|+.+|.+|.+.|
T Consensus 319 vlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfa 398 (435)
T KOG0729|consen 319 VLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFA 398 (435)
T ss_pred EEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHH
Q 004384 653 IRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFA 714 (757)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~ 714 (757)
++..- ...|..||.+|++++ ++-|.+|.
T Consensus 399 irarr--------------------------k~atekdfl~av~kv--------vkgy~kfs 426 (435)
T KOG0729|consen 399 IRARR--------------------------KVATEKDFLDAVNKV--------VKGYAKFS 426 (435)
T ss_pred HHHHh--------------------------hhhhHHHHHHHHHHH--------HHHHHhcc
Confidence 98752 257889999999888 66666553
No 17
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-47 Score=373.19 Aligned_cols=249 Identities=40% Similarity=0.727 Sum_probs=236.0
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
..|.-++.|++|++...+++++.++.|+.||+.+..+|+.||+|++|||+||||||.||+|+|+...+.|+++-|++|+.
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ 257 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ 257 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|.|+..+.+|++|+.|...+|+|+||||||++..+|-.+.+.......|.+-+||++|||+..+..|-||+|||+.+.|
T Consensus 258 kylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~L 337 (440)
T KOG0726|consen 258 KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETL 337 (440)
T ss_pred HHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccccc
Confidence 99999999999999999999999999999999999997665555556677788999999999999999999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
|||++||||+|+.|.||.||...+..||.+|..++.+..+++++.+.-.-+.+|||||+++|.+|.+.|+|+.-
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerR------ 411 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR------ 411 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999862
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
..+|++||.+|.+++
T Consensus 412 --------------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 --------------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred --------------------hhccHHHHHHHHHHH
Confidence 269999999998876
No 18
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-47 Score=363.05 Aligned_cols=250 Identities=42% Similarity=0.724 Sum_probs=238.3
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
.+.|.-.++||+|++...++|.+++..|+.|++.|.++|+.||+|+|+|||||||||.+|++.|...+..|+.+-++.+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLV 242 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC
Q 004384 503 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 582 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ 582 (757)
.+|+|+..+.+|..|..|+..+|+||||||+|++..+|..+....+....|.+-+||++|||+.+...|-||+||||.+.
T Consensus 243 QMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 99999999999999999999999999999999999999877666566778888999999999999999999999999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 662 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 662 (757)
||||++|.||+|+.|+||.|+.+.|.+|++++.+++.+..++++++||+-|++|+|+..+++|-+|++.|+++.
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~------ 396 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRG------ 396 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 663 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|+.+||.+++..+
T Consensus 397 --------------------atev~heDfmegI~eV 412 (424)
T KOG0652|consen 397 --------------------ATEVTHEDFMEGILEV 412 (424)
T ss_pred --------------------cccccHHHHHHHHHHH
Confidence 2379999999998776
No 19
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-45 Score=390.28 Aligned_cols=272 Identities=43% Similarity=0.762 Sum_probs=247.8
Q ss_pred cccccccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEe
Q 004384 145 KREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN 224 (757)
Q Consensus 145 ~~~~~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~ 224 (757)
+++....+++++|+||||+++...++..+|.+|.++|++|+.+|+..+.||||+||||||||.||+++|++.+..|+.|.
T Consensus 498 kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK 577 (802)
T KOG0733|consen 498 KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK 577 (802)
T ss_pred hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 225 GPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 225 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
|++++++|+|+++..++.+|+.|+.+.|||||+||+|+|++.++........|+++||+..||++..+.+|.|||+||+|
T Consensus 578 GPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRP 657 (802)
T KOG0733|consen 578 GPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRP 657 (802)
T ss_pred CHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCC
Confidence 99999999999999999999999999999999999999999998888888899999999999999999999999999999
Q ss_pred CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--CCCCCCchhhhHHhHhcC--CCchhHHHHHHHHHHHHHHHhh
Q 004384 305 NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTH--GYVGADLAALCTEAALQCIREK 380 (757)
Q Consensus 305 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~l~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~~ 380 (757)
+.+||++.|||||++.++++.|+..+|.+||+.+++ +.++..+++++.++..+. ||+|+|+.+||++|++.++++.
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 778899999999999887 9999999999999999999887
Q ss_pred cccccccchhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 381 MDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
...++.......... ....++..||..++....|+.
T Consensus 738 ~~~~~~~~~~~~~~~-~~~~~t~~hF~eA~~~i~pSv 773 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRS-STIIVTYKHFEEAFQRIRPSV 773 (802)
T ss_pred HhhccccCcccceee-eeeeecHHHHHHHHHhcCCCc
Confidence 654433332221111 134577889999999998864
No 20
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-45 Score=397.07 Aligned_cols=251 Identities=49% Similarity=0.849 Sum_probs=239.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||||+++.+.++++.+.+|++||+.|..+|+.++++||||||||||||++|+++|++.+..|+.+.|+++++
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHH
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 310 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~ 310 (757)
+|+|+++..++.+|+.|+...|||+|+||||.++..|+...+....|++++|++.||++....+|+|||+||+|+.||++
T Consensus 507 k~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A 586 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA 586 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence 99999999999999999999999999999999999997766788999999999999999999999999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchh
Q 004384 311 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDET 390 (757)
Q Consensus 311 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~ 390 (757)
+.||||||+.|++|.||.+.|++|++.+++++++.++++++.|+..|+||+|+|+..+|++|+..++++..+
T Consensus 587 LlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~-------- 658 (693)
T KOG0730|consen 587 LLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE-------- 658 (693)
T ss_pred HcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999987643
Q ss_pred hhHHHhhhcccchhhhhhhhccCCCC
Q 004384 391 IDAEILNSMAVSNEHFQTALGTSNPS 416 (757)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~al~~~~p~ 416 (757)
...++.+||.+++....++
T Consensus 659 -------a~~i~~~hf~~al~~~r~s 677 (693)
T KOG0730|consen 659 -------ATEITWQHFEEALKAVRPS 677 (693)
T ss_pred -------cccccHHHHHHHHHhhccc
Confidence 4457788999998877654
No 21
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-45 Score=373.83 Aligned_cols=285 Identities=37% Similarity=0.636 Sum_probs=244.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcc-cCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
.++|+||+|++.+++.+++.+..|+.+++.|...+ +.+++|+|||||||||||++|+++|++.+.+|+.|.++.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 68999999999999999999999999999997544 57889999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCC--eEEEEeeCCCCCCC
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPDII 583 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~--~v~vi~tTn~~~~l 583 (757)
+|++++.++.+|..|.+..||||||||+|++++.|+++ .+++...+.++|+...||+..+. +|+|+||||||..+
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~---dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRST---DHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccc---hHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999543 24678899999999999997655 59999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH--H
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD--I 661 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~--~ 661 (757)
|.|++| |+.++++|++|+.++|.+||+..+++..++.++|+..+|.+|+||||+||.++|+.|+..++++.+... .
T Consensus 245 DeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~ 322 (386)
T KOG0737|consen 245 DEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGL 322 (386)
T ss_pred HHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccc
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999998764 0
Q ss_pred -HHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHH--HHHHHHHHHH
Q 004384 662 -ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADI--RKYQAFAQTL 717 (757)
Q Consensus 662 -~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~--~~y~~~~~~~ 717 (757)
+...... .....+..+..-..++++++||.+|...+-++++.+.. ...+.|.+.+
T Consensus 323 ~d~d~~~~-d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~ 380 (386)
T KOG0737|consen 323 LDLDKAIA-DLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELY 380 (386)
T ss_pred hhhhhhhh-hccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhh
Confidence 0000000 00000000111125789999999999988887654433 3445565544
No 22
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-44 Score=404.28 Aligned_cols=248 Identities=44% Similarity=0.782 Sum_probs=231.0
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
..+.|.|++|.+++|++|+|.+.+ +++|+.|.++|.+.|+|+||+||||||||.||||+|++.+.||+.++|+++..++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999885 8999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccC-CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRG-SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~-~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
+|.....++.+|+.|+..+|||+|+||||.+...|+ ...+..+......+||||.+|||+...++|+|+++||+|+.||
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 999999999999999999999999999999999994 2233445567889999999999999999999999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
+|++||||||+.|++++||...|.+||+.|+++..++ .++|+..+|.+|.||+|+||.++|++|+..|.++.
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~------- 537 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKG------- 537 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999885 78899999999999999999999999999999986
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
...|+..||+.|++.+..
T Consensus 538 -------------------~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 538 -------------------LREIGTKDLEYAIERVIA 555 (774)
T ss_pred -------------------cCccchhhHHHHHHHHhc
Confidence 237999999999985433
No 23
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.4e-44 Score=387.15 Aligned_cols=252 Identities=44% Similarity=0.742 Sum_probs=235.2
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
+.|+++|+||+|++.+++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|+|++++.++.+|..|+...||||||||+|.++.+|.......+....+++.+||++||++....+++||+|||+|+.|
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999998875433333345678899999999999888899999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
|||++||||||+.|+||+|+.++|..||+.+++++++..++|+..+|+.++||||+||.++|++|++.|+++.
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~------- 370 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN------- 370 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 701 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 701 (757)
...|+++||++|+.++...
T Consensus 371 -------------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 -------------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -------------------CCccCHHHHHHHHHHHHhc
Confidence 2379999999999997554
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-43 Score=387.12 Aligned_cols=247 Identities=43% Similarity=0.802 Sum_probs=234.3
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
...++|.|+.|.+++|+.+.+.+.+ +++|..|..+|...|+|++|+||||||||+|||++|++.+.||++++++++..+
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3578999999999999999999874 788999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
|+|.....+|.+|.+|++++||||||||||++...|+.+.+.........+||+|.+|||+..+..|+|+++||||+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999987655555566779999999999999989999999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 664 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 664 (757)
|||+||||||+.|.++.||...|.+|++.|+++.+++.++|+..+|+.|.||+|+|+.+++++|+..|.+++
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n-------- 374 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRN-------- 374 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 665 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|++.||.+|+.++
T Consensus 375 ------------------~~~i~~~~i~ea~drv 390 (596)
T COG0465 375 ------------------KKEITMRDIEEAIDRV 390 (596)
T ss_pred ------------------CeeEeccchHHHHHHH
Confidence 3479999999999887
No 25
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.9e-43 Score=336.54 Aligned_cols=245 Identities=38% Similarity=0.696 Sum_probs=218.7
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.++++++|++|++++|+.-+-.+.+ +.+|+.|.+ -.|+++|||||||||||++|+++|++.+.||+.+++.++++.
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHH-hhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 4688999999999999876555444 567777765 467899999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
|+|+..+.|+++|++|++.+|||+||||+|+++-.|... +-.+...+++|.||++|||+..+.+|+.|||||+|+.||
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQ--elRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD 268 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ--ELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLD 268 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHH--HhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcC
Confidence 999999999999999999999999999999999888654 234557899999999999999999999999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE-ICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~-~~~~a~~~a~~~~~~~~~~~ 663 (757)
+|+.+ ||...|+|.+|+.++|.+|++.+++++|+.-+.++..+++.+.||||+||.. +++.|...|+.+.
T Consensus 269 ~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed------- 339 (368)
T COG1223 269 PAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAED------- 339 (368)
T ss_pred HHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhc-------
Confidence 99988 9999999999999999999999999999999999999999999999999976 6666666777654
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCC
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVS 703 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~ 703 (757)
...|+.+|++.|+++.+++-.
T Consensus 340 -------------------~e~v~~edie~al~k~r~~r~ 360 (368)
T COG1223 340 -------------------REKVEREDIEKALKKERKRRA 360 (368)
T ss_pred -------------------hhhhhHHHHHHHHHhhccccC
Confidence 237999999999998655443
No 26
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=6.1e-42 Score=373.87 Aligned_cols=259 Identities=48% Similarity=0.809 Sum_probs=239.2
Q ss_pred eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 421 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 421 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
...+.|.+.|++++|+++.++.+.+.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|.+++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
+..+|+|++++.++.+|+.|+...||||||||+|.+++.|+...........+.+.+++.+++++....+++||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998886543333344577888999999998888899999999999
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 660 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 660 (757)
+.+|+|++||||||+.|+||+|+.++|.+||+.++++.++..++++..+|..|+||||+||+++|++|++.|+++.
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~---- 356 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD---- 356 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999888999999999999999999999999999999864
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHH
Q 004384 661 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDA 705 (757)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~ 705 (757)
...|+.+||.+|++.++++-..+
T Consensus 357 ----------------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ----------------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----------------------CCCcCHHHHHHHHHHHhcccccc
Confidence 23699999999999998876543
No 27
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-42 Score=372.35 Aligned_cols=268 Identities=44% Similarity=0.752 Sum_probs=240.5
Q ss_pred cccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004384 149 EDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 228 (757)
Q Consensus 149 ~~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l 228 (757)
.+++|++.|+||||+++.|..|.+.+.+|++||++|.+ |+.+..|||||||||||||.+|+++|.++...|+.|.|+++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 45789999999999999999999999999999999975 88889999999999999999999999999999999999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC--chHHHHHHHHHHHHHhhccc--CCCeEEEEEecCCC
Q 004384 229 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 304 (757)
Q Consensus 229 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~~l~~~~--~~~~v~vI~atn~~ 304 (757)
.++|+|++++++|.+|+.|+...|||||+||+|.++|+|+.. ++.+-.|+++||+..||++. ....|+||||||+|
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP 821 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP 821 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc
Confidence 999999999999999999999999999999999999998754 45688999999999999998 45689999999999
Q ss_pred CCCCHHhhccCCcceEEEeCCCCH-HHHHHHHHHHhcCCCCCCchhhhHHhHhcC-CCchhHHHHHHHHHHHHHHHhhcc
Q 004384 305 NSIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIHTKNMKLSDDVDLERIAKDTH-GYVGADLAALCTEAALQCIREKMD 382 (757)
Q Consensus 305 ~~ld~~l~r~~rf~~~i~i~~p~~-~~r~~il~~~~~~~~l~~~~~l~~la~~t~-g~~~~dl~~l~~~a~~~~~~~~~~ 382 (757)
+.+||+|.||||||+.+++++++. +.+..+|++.++++.+.+++++..+|+.++ .|+|+|+-++|..|.+.++++...
T Consensus 822 DLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 822 DLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred cccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864 568899999999999999999999999875 799999999999999999998766
Q ss_pred cccccchhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 383 VIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
.++.............+.++++||.++..+..|+-
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 54332111122223467799999999999988864
No 28
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=369.87 Aligned_cols=249 Identities=41% Similarity=0.726 Sum_probs=232.3
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
+.|..+|+||+|+++.++.+.+.+.+|+.+++.+..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|+|++++.++.+|+.|+...|||+||||||.++.+|.......+....+.+.+||++||++....++.||+|||+++.|
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 99999999999999999999999999999999998886543333334567888999999999878889999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
|++++||||||+.|+||+||.++|.+||+.+++++.+..++|+..++..++||||+||+++|++|++.|+++.
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~------- 408 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER------- 408 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|+.+||.+|+.++
T Consensus 409 -------------------r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 409 -------------------RMKVTQADFRKAKEKV 424 (438)
T ss_pred -------------------CCccCHHHHHHHHHHH
Confidence 2379999999999887
No 29
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-42 Score=357.53 Aligned_cols=277 Identities=38% Similarity=0.655 Sum_probs=235.5
Q ss_pred eccCCcccc--ccchhhH-HHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC-ceEEEeCc
Q 004384 424 EVPNVSWED--IGGLENV-KRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGP 499 (757)
Q Consensus 424 ~~~~~~~~~--i~g~~~~-k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~-~~i~v~~~ 499 (757)
-.|+..|++ |+|++.- -...+++....+-.|+...++|++.-+|+|||||||||||.+|+.+.+.++. .--.|+|+
T Consensus 212 i~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 212 INPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred cCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 346777777 5677643 3334555555566788999999999999999999999999999999999864 33458999
Q ss_pred cccccccCchhHHHHHHHHHHHh--------CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeE
Q 004384 500 ELLTMWFGESEANVREIFDKARQ--------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV 571 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~--------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v 571 (757)
++++||+|++|.++|.+|..|.. +..-||+|||||+++.+||+..++ .+.++.++||||.-|||++...++
T Consensus 292 eIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~-TGVhD~VVNQLLsKmDGVeqLNNI 370 (744)
T KOG0741|consen 292 EILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGS-TGVHDTVVNQLLSKMDGVEQLNNI 370 (744)
T ss_pred HHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCC-CCccHHHHHHHHHhcccHHhhhcE
Confidence 99999999999999999998864 234699999999999999987544 678999999999999999999999
Q ss_pred EEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC----CCCCccCHHHHHHHcCCCCHHHHHHHHHH
Q 004384 572 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVSKDVDLRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 572 ~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~~~~d~~~la~~~~g~sg~di~~~~~~ 647 (757)
+||+-|||+|.||+||||||||...+++.+||+..|.+|+++|.+++ .+..++|+.+||..|.+||||+|+.+++.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999775 47789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCC--CCHHHHHHHHH
Q 004384 648 ACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS--VSDADIRKYQA 712 (757)
Q Consensus 648 a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s--~~~~~~~~y~~ 712 (757)
|...|+.+.++.... ..++. ...+...|+++||..|+.+++|. +++++++.|..
T Consensus 451 A~S~A~nR~vk~~~~---------~~~~~--~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGK---------VEVDP--VAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhhhccCcc---------eecCc--hhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 999999998764310 01111 12234589999999999999995 78888877653
No 30
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=359.09 Aligned_cols=277 Identities=38% Similarity=0.661 Sum_probs=247.7
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
...+.+.|+|+.|++.+|+.+.+.+.||...++.|..+ ..+.+|+||.||||+|||+|++++|.+++..|+.++++.|.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 34567999999999999999999999999999999874 45678999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCeEEEEeeCCCC
Q 004384 503 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATNRP 580 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~tTn~~ 580 (757)
++|+|++++.++.+|+-|+...|+|+|+||||+++..|... ......|+..+||.++++.. ..++|+||||||+|
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~---e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P 300 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDN---EHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRP 300 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCc---ccccchhhhhHHHhhhccccCCCCCeEEEEecCCCc
Confidence 99999999999999999999999999999999999999443 34578899999999999875 35689999999999
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC-CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV-SKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
|.+|.|++| ||.+++|+|+||+++|..+|+..+.+.+. ..+.|+..+++.|+||||+||.++|++|++..+++....
T Consensus 301 ~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 301 WELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred hHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccc
Confidence 999999999 99999999999999999999999988743 345789999999999999999999999999988876432
Q ss_pred -HHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 004384 660 -DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 660 -~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 719 (757)
.. +....+..+.++..||+++++.++|+++...+++|.+|..+|+-
T Consensus 379 ~~~--------------~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 379 TDL--------------EFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred hhh--------------hhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 11 01122346799999999999999999999999999999999965
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-41 Score=331.46 Aligned_cols=247 Identities=41% Similarity=0.718 Sum_probs=230.5
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
.+++|+.++|+..+...+++.+..|+.++++|.++|+.+|.|++||||||+|||.+|+++|...+.+|+.+..+++.++|
T Consensus 127 ~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ky 206 (388)
T KOG0651|consen 127 RNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKY 206 (388)
T ss_pred cccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhh
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
.|++.+.||+.|..|+...|||||+||||+++++|.+....++....+.+-.|+++||++....+|-+|+|||+|+.|||
T Consensus 207 iGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdp 286 (388)
T KOG0651|consen 207 IGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDP 286 (388)
T ss_pred cccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccch
Confidence 99999999999999999999999999999999999554444445567778889999999999999999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
||+||||+|+.+++|+|+...|..|++.+.+.......+|.+.+.+..+||+|+|+++.|+||.+.|+++.-
T Consensus 287 aLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~-------- 358 (388)
T KOG0651|consen 287 ALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER-------- 358 (388)
T ss_pred hhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh--------
Confidence 999999999999999999999999999999998888899999999999999999999999999999988752
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
..+-++||..++.+.
T Consensus 359 ------------------~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 359 ------------------DEVLHEDFMKLVRKQ 373 (388)
T ss_pred ------------------HHHhHHHHHHHHHHH
Confidence 257888999888765
No 32
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-39 Score=325.98 Aligned_cols=264 Identities=41% Similarity=0.674 Sum_probs=234.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
.-+++.|+||.|+.+.++-|+|++.+|+..|+.|+.+ ..|-++||++||||||||+||+++|.+++..|+.|+.+.+.+
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 4467999999999999999999999999999999964 467899999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch-HHHHHHHHHHHHHhhcccCC----CeEEEEEecCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG-EVERRIVSQLLTLMDGLKSR----AHVIVIGATNRPN 305 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~-~~~~~~~~~Ll~~l~~~~~~----~~v~vI~atn~~~ 305 (757)
+|.|++++.++.+|+.|+...|++|||||||.|+..++...+ +..+|+...|+-+||++... ..|+|+++||-||
T Consensus 284 KwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PW 363 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPW 363 (491)
T ss_pred hhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCc
Confidence 999999999999999999999999999999999999886544 45689999999999987643 2489999999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccc
Q 004384 306 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVID 385 (757)
Q Consensus 306 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~ 385 (757)
+||.+++| ||.+.|++|.|+.+.|..+++..++...+.++++++.+++.++||+|+||..+|++|++..+++......
T Consensus 364 diDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~g~~ 441 (491)
T KOG0738|consen 364 DIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIAGLT 441 (491)
T ss_pred chHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999998765433
Q ss_pred ccchh-hhHHHhhhcccchhhhhhhhccCCCCCc
Q 004384 386 LEDET-IDAEILNSMAVSNEHFQTALGTSNPSAL 418 (757)
Q Consensus 386 ~~~~~-~~~~~~~~~~~~~~~~~~al~~~~p~~~ 418 (757)
-.... ...+.. ...++..||+.|+.++.|+..
T Consensus 442 ~~ei~~lakE~~-~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 442 PREIRQLAKEEP-KMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred cHHhhhhhhhcc-ccccchhhHHHHHHHcCcCCC
Confidence 22111 111111 255889999999999988754
No 33
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=4.3e-39 Score=363.91 Aligned_cols=249 Identities=43% Similarity=0.805 Sum_probs=228.6
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
+.|.++|+|++|++++|+.+.+.+.+ +.+++.+...+..+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~ 126 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE 126 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH
Confidence 35789999999999999999998776 78888999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
.|+|.+++.++.+|+.|+...||||||||||.+...|+...........+++++||.+||++....+++||+|||+|+.|
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 99999999999999999999999999999999998886542222345678999999999999888899999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIER 663 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~ 663 (757)
|||++||||||+.|++++|+.++|.+||+.++++.+...++++..+|+.+.||||+||.++|++|+..|.++.
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~------- 279 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN------- 279 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-------
Confidence 9999999999999999999999999999999999888888999999999999999999999999998887653
Q ss_pred HHhhcCCCccccccccccccccccHHHHHHHHhhcC
Q 004384 664 ERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 699 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~ 699 (757)
...|+.+||++|+..+.
T Consensus 280 -------------------~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 280 -------------------KTEITMNDIEEAIDRVI 296 (495)
T ss_pred -------------------CCCCCHHHHHHHHHHHh
Confidence 23799999999999874
No 34
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=306.66 Aligned_cols=295 Identities=38% Similarity=0.685 Sum_probs=248.4
Q ss_pred cCCcEEEEecCceeEEEE-EEEe------cCCceEEECCCceEEecCCCCc---cc---ccccCCCCCcccccChHHHHH
Q 004384 102 RKGDLFLVRGGMRSVEFK-VIET------DPGEYCVVAPDTEIFCEGEPIK---RE---DEDRLDEVGYDDVGGVRKQMA 168 (757)
Q Consensus 102 ~~g~~~~~~~~~~~~~f~-v~~~------~~~~~~~~~~~t~~~~~~~~~~---~~---~~~~~~~~~~~~i~G~~~~~~ 168 (757)
.+|-+..+..+.+..+|- |+.. .|++.+-+..++.+.++.-|.. +. ..+.-+.-.|+||||++++++
T Consensus 102 rkgkcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIq 181 (424)
T KOG0652|consen 102 RKGKCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQ 181 (424)
T ss_pred ccceeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHH
Confidence 455555555554444443 5553 3677788888887766654432 11 112335568999999999999
Q ss_pred HHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHH
Q 004384 169 QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE 248 (757)
Q Consensus 169 ~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~ 248 (757)
.+.+.+.+|+.|++.|+++|+.||+|+|+|||||||||.+||+.|...+..|..+.++.++..+.|+..+.++..|..|.
T Consensus 182 ELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAK 261 (424)
T KOG0652|consen 182 ELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAK 261 (424)
T ss_pred HHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeEEEEcccccccCCCCCCchHHH---HHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCC
Q 004384 249 KNAPSIIFIDEIDSIAPKREKTHGEVE---RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 325 (757)
Q Consensus 249 ~~~p~il~iDEid~l~~~~~~~~~~~~---~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~ 325 (757)
...|+|+||||+|.+..++-.....-+ +|..-.|++.+|++.+...+-||++||+.+-+||+|.|.||+++.|++|.
T Consensus 262 EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~ 341 (424)
T KOG0652|consen 262 EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPH 341 (424)
T ss_pred ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCC
Confidence 999999999999999887643322122 34445677788999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhh
Q 004384 326 PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEH 405 (757)
Q Consensus 326 p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (757)
|+++.|.+|+++|.+++.+.++++++.+++.|++|+|+..+++|-+|.+.++++.. ..++.+|
T Consensus 342 Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-----------------tev~heD 404 (424)
T KOG0652|consen 342 PNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-----------------TEVTHED 404 (424)
T ss_pred CChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc-----------------ccccHHH
Confidence 99999999999999999999999999999999999999999999999999988753 3456667
Q ss_pred hhhhhccC
Q 004384 406 FQTALGTS 413 (757)
Q Consensus 406 ~~~al~~~ 413 (757)
|...+.++
T Consensus 405 fmegI~eV 412 (424)
T KOG0652|consen 405 FMEGILEV 412 (424)
T ss_pred HHHHHHHH
Confidence 76665544
No 35
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=1.5e-38 Score=350.21 Aligned_cols=252 Identities=43% Similarity=0.771 Sum_probs=215.0
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc----------
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------- 492 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~---------- 492 (757)
.+.|+++|++|+|++..++.+++.+.+|+.+++.|..+|+.+++|+|||||||||||++|+++|++++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3568899999999999999999999999999999999999999999999999999999999999997543
Q ss_pred eEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCC
Q 004384 493 FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK 568 (757)
Q Consensus 493 ~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 568 (757)
|+.++++++.++|+|++++.++.+|+.|+.. .|||+||||+|.++..|+.+. .+....+++++||++||++...
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhcccccC
Confidence 7788899999999999999999999998864 699999999999999886532 2234578899999999999888
Q ss_pred CeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc-CCCCC---------ccCHHHHHH-------
Q 004384 569 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-SPVSK---------DVDLRALAK------- 631 (757)
Q Consensus 569 ~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-~~~~~---------~~d~~~la~------- 631 (757)
.+++||+|||+++.||||++||||||.+|+|++|+.++|.+||+.++.. .++.. ..++..+++
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999865 34411 112222222
Q ss_pred ----------------------HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHH
Q 004384 632 ----------------------YTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAA 689 (757)
Q Consensus 632 ----------------------~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 689 (757)
.++.+||++|+++|..|...|+.+.+.. ....++++
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~----------------------~~~~~~~~ 469 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG----------------------GQVGLRIE 469 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc----------------------CCcCcCHH
Confidence 1456889999999999999998887631 12479999
Q ss_pred HHHHHHhhc
Q 004384 690 HFEESMKFA 698 (757)
Q Consensus 690 ~~~~a~~~~ 698 (757)
|+..|+..-
T Consensus 470 ~l~~a~~~e 478 (512)
T TIGR03689 470 HLLAAVLDE 478 (512)
T ss_pred HHHHHHHHh
Confidence 999998653
No 36
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.7e-38 Score=301.03 Aligned_cols=302 Identities=34% Similarity=0.571 Sum_probs=256.7
Q ss_pred hhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCcccccccCCCCCcccccCh
Q 004384 84 NLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEDRLDEVGYDDVGGV 163 (757)
Q Consensus 84 ~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~G~ 163 (757)
++++.|-++.|. +..++.|+.+.-.+....+.|+|+++.|.+-+++++.|.+....... ...+..++++++|+.|+
T Consensus 51 ~~F~~YArdQW~--Ge~v~eg~ylFD~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~--~~~e~~~~it~ddViGq 126 (368)
T COG1223 51 EVFNIYARDQWL--GEVVREGDYLFDTRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPRE--EDREIISDITLDDVIGQ 126 (368)
T ss_pred HHHHHHHHHhhc--ceeeecCceEeecccccccceeEEEEeCCCCceecceEEEEecCcch--hhhhhhccccHhhhhch
Confidence 577778887775 56789999987766667788999999999977777666554432221 11235678999999999
Q ss_pred HHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHH
Q 004384 164 RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKA 243 (757)
Q Consensus 164 ~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~v 243 (757)
++.+.+++-++.+ +.+|+.|..| .|++||+|||||||||++|+++|++...+++.++..++++.++|+...+++.+
T Consensus 127 EeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihel 202 (368)
T COG1223 127 EEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHEL 202 (368)
T ss_pred HHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHH
Confidence 9999999888877 8899999887 58899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEEEEcccccccCCCCCC--chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEE
Q 004384 244 FEEAEKNAPSIIFIDEIDSIAPKREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREI 321 (757)
Q Consensus 244 f~~a~~~~p~il~iDEid~l~~~~~~~--~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i 321 (757)
++.|....|||+||||+|++.-++... .++ -..+++.|++.||++..+.+|+.|++||+|+.+|+++++ ||..+|
T Consensus 203 y~rA~~~aPcivFiDE~DAiaLdRryQelRGD-VsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRs--RFEeEI 279 (368)
T COG1223 203 YERARKAAPCIVFIDELDAIALDRRYQELRGD-VSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRS--RFEEEI 279 (368)
T ss_pred HHHHHhcCCeEEEehhhhhhhhhhhHHHhccc-HHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHh--hhhhee
Confidence 999999999999999999998776432 122 256789999999999999999999999999999999998 999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHH-HHHHHHHHHHHhhcccccccchhhhHHHhhhcc
Q 004384 322 DIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA-LCTEAALQCIREKMDVIDLEDETIDAEILNSMA 400 (757)
Q Consensus 322 ~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~-l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (757)
++..|+.++|.+|++.+.+.+++.-+.+++.++..+.|++|+|+.. .++.|..+++.... -.
T Consensus 280 EF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-----------------e~ 342 (368)
T COG1223 280 EFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-----------------EK 342 (368)
T ss_pred eeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch-----------------hh
Confidence 9999999999999999999999998999999999999999999865 45666666665432 23
Q ss_pred cchhhhhhhhccC
Q 004384 401 VSNEHFQTALGTS 413 (757)
Q Consensus 401 ~~~~~~~~al~~~ 413 (757)
+..+|++.++.+.
T Consensus 343 v~~edie~al~k~ 355 (368)
T COG1223 343 VEREDIEKALKKE 355 (368)
T ss_pred hhHHHHHHHHHhh
Confidence 5667788777653
No 37
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-38 Score=311.13 Aligned_cols=247 Identities=45% Similarity=0.777 Sum_probs=226.3
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
++.+.-+|.||||++.+++.|++.+++|+.||++|+..|+.||++|+|||+||||||.||+++|+...+.|+.+-|++++
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 34567799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHH---HHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV---SQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~---~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
.+|.|+....++++|+.|..+.|+|+||||||++..++....+.-++.+. -.|++.+|++.+++.|-||.+||+.+.
T Consensus 257 QkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccc
Confidence 99999999999999999999999999999999999887655444344333 356777889999999999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
+||+|.||||+++.|+|+.||+..+..|+.+|+.+|.+.++++++.+...-+.++|+|+.++|.+|.+.+++..
T Consensus 337 LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRer------ 410 (440)
T KOG0726|consen 337 LDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRER------ 410 (440)
T ss_pred cCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888764
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccC
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
.+.++.+||.++.+.+
T Consensus 411 -----------Rm~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 411 -----------RMKVTMEDFKKAKEKV 426 (440)
T ss_pred -----------HhhccHHHHHHHHHHH
Confidence 3557888888876554
No 38
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-38 Score=303.04 Aligned_cols=247 Identities=42% Similarity=0.776 Sum_probs=225.8
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
++.++-+|+-+||++++++.|++.+++|.+||++|+++|+..|+++|||||||+|||.|++++|....+.|+.++|++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 35677789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchH---HHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGE---VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~---~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
.+|.|+....++.+|-.|+.+.|+|+|.||||.+...+...+.. --+|..-.|++.+|++....++-||.+||+.+-
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999877543322 223445567788899999899999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
+||++.|+||+++.|+||+|+++.|.+||++|.+++++....++..+|....|-+|+++...|.+|.+.++++.
T Consensus 299 ld~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer------ 372 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER------ 372 (404)
T ss_pred ccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998864
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccC
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
...++.+||+-|..++
T Consensus 373 -----------rvhvtqedfemav~kv 388 (404)
T KOG0728|consen 373 -----------RVHVTQEDFEMAVAKV 388 (404)
T ss_pred -----------hccccHHHHHHHHHHH
Confidence 3567888888776544
No 39
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3e-38 Score=344.01 Aligned_cols=251 Identities=51% Similarity=0.837 Sum_probs=231.1
Q ss_pred eeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 422 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 422 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
..+.|.+.|++++|+++.++.+.+.+.+|+.+++.+..+|+.+++|+|||||||||||++|+++|++++.+|+.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 34568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC
Q 004384 502 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 581 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~ 581 (757)
..+|+|+....++.+|+.++...|+||||||+|.+...|.......+....+.+.+++.+++++....++.||+|||+++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~ 272 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPD 272 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChh
Confidence 99999999999999999999999999999999999987765433333445678889999999987778899999999999
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 582 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 661 (757)
Q Consensus 582 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~ 661 (757)
.+|++++||||||+.|+|++|+.++|.+||+.++++..+..++++..+++.++||||+||.++|++|++.|+++.
T Consensus 273 ~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~----- 347 (364)
T TIGR01242 273 ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE----- 347 (364)
T ss_pred hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 999999999999999999999999999999999999988888999999999999999999999999999998864
Q ss_pred HHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 662 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|+.+||.+|++++
T Consensus 348 ---------------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 ---------------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---------------------CCccCHHHHHHHHHHh
Confidence 2379999999999875
No 40
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-38 Score=330.99 Aligned_cols=228 Identities=44% Similarity=0.742 Sum_probs=217.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
...++.|+|+-|+++.++.+.|++++ ++.|+.|.++|=+-|+||||+||||||||.|||++|++.+.+|++..|+++-.
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE 375 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh
Confidence 34578899999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHH
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 310 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~ 310 (757)
.++|....+++.+|+.|+.+.||||||||||++..++........+..++||+..||++.++.+|+|||+||.|+.+|++
T Consensus 376 m~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999999987666667788899999999999999999999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 311 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 311 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
|.||||||++|.+|.||...|.+||+.|+.++++.+++|+..+|+.|.||+|+|+.++++.|+..+...
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999999999999877644
No 41
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-38 Score=301.50 Aligned_cols=230 Identities=47% Similarity=0.774 Sum_probs=215.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
.-++++|.||||++-+++.|++.+++|+.|.++++.+|+.||+|||+|||||||||+|++++|+.....|+.+.|++++.
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
+|.|+....++.+|..|+.+.|+|+||||+|.++.++-.... .--+|++-.|++.||++....++-||.+||+.+.+
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtl 307 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTL 307 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccccc
Confidence 999999999999999999999999999999999987643222 22356777888999999999999999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhh
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 380 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 380 (757)
||++.|+||+++.|++|.|+..++.-++...+.+|.+.+++|++.+..+.+..+++|+.++|++|.+.+.++.
T Consensus 308 dpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n 380 (408)
T KOG0727|consen 308 DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN 380 (408)
T ss_pred CHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998865
No 42
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1e-37 Score=355.30 Aligned_cols=246 Identities=42% Similarity=0.771 Sum_probs=226.7
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
..++|+|++|++++++.+.+.+.+ +++++.+..++..+++|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 468999999999999999988765 6778889999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
+|.....++.+|+.|+...||||||||||.+...|+.+.+........++++||.+||++....+++||+|||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 99999999999999999999999999999999888765444445567899999999999988889999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
|++||||||+.|+|++||.++|.+||+.++++..+..++++..+|+.+.||||+||+++|++|+..|.++.
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~--------- 407 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK--------- 407 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888888999999999999999999999999999887664
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...||.+||++|+..+
T Consensus 408 -----------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 -----------------KATITMKEIDTAIDRV 423 (638)
T ss_pred -----------------CCCcCHHHHHHHHHHH
Confidence 2369999999999876
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=333.33 Aligned_cols=229 Identities=42% Similarity=0.725 Sum_probs=221.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
..++|+||||+.++++.+.+.+.+|-+||.+|.+..+.-+.|||||||||||||.||.++|...+..|+.|.|+++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhh
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR 312 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~ 312 (757)
.|.+++.++.+|..|+...|||||+||+|.++|+|+.....+..|+++||++.||+...-.+|.|+|+|.+|+.|||+|.
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 99999999999999999999999999999999999998889999999999999999998889999999999999999999
Q ss_pred ccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhc
Q 004384 313 RFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 381 (757)
Q Consensus 313 r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 381 (757)
|+||+|+.++.+.|++.+|++|++.+........++|++.+|..|+||+|+|+..++..|.+.+..+..
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999989999999999999999999999999999999887776543
No 44
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-37 Score=350.23 Aligned_cols=387 Identities=38% Similarity=0.593 Sum_probs=300.5
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEechh
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCINGPE 227 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~-----~~~~~v~~~~ 227 (757)
..++|++|||++..+.++++++.+|+.||+.|.++++.++++||++||||||||..|+++|..+. ..|+.-.+.+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 35789999999999999999999999999999999999999999999999999999999998874 3466677889
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 228 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
..++|+|+.+..++.+|+.|+..+|+|+|+||||-+++.+....+.+...++..|+.+|+++..++.|+||||||+++.+
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpda~ 419 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPDAI 419 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcccc
Confidence 99999999999999999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
||+++|+|||+++++++.|+...|.+|+..+.++..-. ...-+..++..+.||.|+|++++|.+|++.++++....+..
T Consensus 420 dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 420 DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 99999999999999999999999999999998877532 23357899999999999999999999999999876654433
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccCCCCCceeeeeeccCCc-ccc-ccchhhHHHHhhh-------------hccCCC
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVS-WED-IGGLENVKRELQE-------------TVQYPV 451 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~~~~~~~~~~~-~~~-i~g~~~~k~~l~~-------------~i~~~~ 451 (757)
....... ......+...+|..|+....|+..+........+. .-. +.+....-..++. ...+.+
T Consensus 500 s~~kl~~-d~~~ikV~~~~f~~A~~~i~ps~~R~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v 578 (1080)
T KOG0732|consen 500 SSDKLLI-DVALIKVEVRDFVEAMSRITPSSRRSSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLV 578 (1080)
T ss_pred ccccccc-cchhhhhhhHhhhhhhhccCCCCCccccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHH
Confidence 3222211 11234488889999998888877664332211111 000 1101111111111 111100
Q ss_pred CChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-CCceEEEeCccccccc-cCchhHHHHHHHHHHHhCCCeEEE
Q 004384 452 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPELLTMW-FGESEANVREIFDKARQSAPCVLF 529 (757)
Q Consensus 452 ~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-~~~~i~v~~~~l~~~~-~g~~e~~i~~lf~~a~~~~p~il~ 529 (757)
+..+..-...+--...+++.|..|.|-+.+..++-+.+ +.+......+.++..- ....+..|..+|..|+...|||+|
T Consensus 579 ~~~e~~~~i~lic~~~lli~~~~~~g~~~lg~aIlh~~~~~~v~s~~issll~d~~~~~~~~~iv~i~~eaR~~~psi~~ 658 (1080)
T KOG0732|consen 579 RSFESNFAIRLICRPRLLINGGKGSGQDYLGPAILHRLEGLPVQSLDISSLLSDEGTEDLEEEIVHIFMEARKTTPSIVF 658 (1080)
T ss_pred HhhhcccchhhhcCcHHhcCCCcccccCcccHHHHHHHhccchHHHHHHHHHhccccccHHHHHHHHHHHHhccCCceee
Confidence 00000000011112338899999999999999998765 4555555555555443 456678899999999999999999
Q ss_pred Eecccchhccc
Q 004384 530 FDELDSIATQR 540 (757)
Q Consensus 530 iDEid~l~~~r 540 (757)
|-.+|......
T Consensus 659 ip~~d~w~~~~ 669 (1080)
T KOG0732|consen 659 IPNVDEWARVI 669 (1080)
T ss_pred ccchhhhhhcC
Confidence 99999876543
No 45
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-37 Score=295.55 Aligned_cols=230 Identities=43% Similarity=0.779 Sum_probs=212.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
.-++++|.|+||.+++++++++.+++|+.||+.|-++|+.|+++||||||||||||.+||++|+..++.|+.+-+++++.
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
+|+|+....++.+|+.|+....||+|+||||++...+-.. .+..-+|..-.|++.+|++..++++-|+.+||+|+.+
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpdtl 329 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTL 329 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCCCc
Confidence 9999999999999999999999999999999998765322 2222234445677788999999999999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhh
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 380 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 380 (757)
||+|.|+||+++.++|..|+.+.|..|+++|.+.+.+..+..++.+++.+.+.+|+++..+|.+|.+.+++..
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairar 402 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRAR 402 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888764
No 46
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=3.5e-36 Score=347.39 Aligned_cols=248 Identities=40% Similarity=0.772 Sum_probs=226.3
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
....|+++.|.+..++.+.+.+.+ ...+..+..++...++|++|+||||||||++++++|++++.+|+.++++++...|
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 356799999999999999998876 4556677777888889999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
+|.....++.+|+.|+...|||+||||+|.++.+|+...+.......+++++||.+||++....+++||+|||+|+.||+
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~ 305 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP 305 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence 99999999999999999999999999999999988764333344567899999999999998889999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
|++||||||+.|+|++||.++|.+||+.++++.++..++|+..+|+.+.||||+||.++|++|+..|+++.
T Consensus 306 Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~--------- 376 (644)
T PRK10733 306 ALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--------- 376 (644)
T ss_pred HHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
...|+++||++|+..+.+
T Consensus 377 -----------------~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 377 -----------------KRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred -----------------CCcccHHHHHHHHHHHhc
Confidence 237999999999987744
No 47
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=4.8e-36 Score=355.49 Aligned_cols=212 Identities=20% Similarity=0.330 Sum_probs=179.8
Q ss_pred CChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc----------cC--------------
Q 004384 452 EHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW----------FG-------------- 507 (757)
Q Consensus 452 ~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~----------~g-------------- 507 (757)
.......++|+.+++|+||+||||||||+||||+|++++.||+.+++++++.+| +|
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 345566788999999999999999999999999999999999999999998765 22
Q ss_pred -----------------chhH--HHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--
Q 004384 508 -----------------ESEA--NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-- 566 (757)
Q Consensus 508 -----------------~~e~--~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-- 566 (757)
+++. .++.+|+.|++.+||||||||||+++.+. .....+++||++||+..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---------s~~ltL~qLLneLDg~~~~ 1767 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---------SNYLSLGLLVNSLSRDCER 1767 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---------cceehHHHHHHHhcccccc
Confidence 2223 38999999999999999999999998641 11224899999999864
Q ss_pred -CCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh--ccCCCCCc-cCHHHHHHHcCCCCHHHHH
Q 004384 567 -AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL--RKSPVSKD-VDLRALAKYTQGFSGADIT 642 (757)
Q Consensus 567 -~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l--~~~~~~~~-~d~~~la~~~~g~sg~di~ 642 (757)
...+|+||||||+|+.||||++||||||+.|+++.|+..+|.+++...+ ++.++..+ +|+..+|+.|.|||||||.
T Consensus 1768 ~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHH
Confidence 4568999999999999999999999999999999999999999998654 45555543 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 643 EICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 643 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
++|+||+..|+++. ...|+..+++.|+...
T Consensus 1848 nLvNEAaliAirq~--------------------------ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1848 ALTNEALSISITQK--------------------------KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHHHHHHHHHHcC--------------------------CCccCHHHHHHHHHHH
Confidence 99999999999976 2357788888887643
No 48
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=346.34 Aligned_cols=266 Identities=38% Similarity=0.688 Sum_probs=228.7
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCcc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPE 500 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~ 500 (757)
..+.|++++|++.++..|++.+..|+.+++.|..+++.|++|+||+||||||||..|+++|..+ +..|+.-++++
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD 339 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGAD 339 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCch
Confidence 4689999999999999999999999999999999999999999999999999999999999987 35678889999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
.+++|+|+.|+.++.+|+.|++..|+||||||||-|++.|+... ...+..++++||..|||+..++.|+||+|||||
T Consensus 340 ~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq---Eqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 340 CLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ---EQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred hhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH---HHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 99999999999999999999999999999999999999996542 346788999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
+.+|||+.||||||+.+|||+|+.++|.+|+.++.++..-. ...-+..+|+.+.||-|+||+++|.+|++.++++...+
T Consensus 417 da~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~Pq 496 (1080)
T KOG0732|consen 417 DAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFPQ 496 (1080)
T ss_pred cccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccCe
Confidence 99999999999999999999999999999999999886522 22236789999999999999999999999999986432
Q ss_pred HHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCH
Q 004384 660 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSD 704 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~ 704 (757)
.... ..-..+ ......|...||..|+..+-|+...
T Consensus 497 ~y~s-----~~kl~~-----d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 497 IYSS-----SDKLLI-----DVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eecc-----cccccc-----cchhhhhhhHhhhhhhhccCCCCCc
Confidence 1100 000000 1112348888888888887665443
No 49
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-35 Score=291.92 Aligned_cols=227 Identities=39% Similarity=0.697 Sum_probs=209.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
-+++.|+|+.||+..++.+++.+.+|+++|++|.. +-.|-++||||||||||||.||+++|.+.+..|+.|+.++++++
T Consensus 127 KPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK 205 (439)
T KOG0739|consen 127 KPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 205 (439)
T ss_pred CCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH
Confidence 47899999999999999999999999999999975 34567899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCCHH
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDPA 310 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~v~vI~atn~~~~ld~~ 310 (757)
|.|++++.++.+|+.|+.+.|+||||||||.++..++...++..+|+...|+-.|.+... ..+++|+|+||-|+.+|.+
T Consensus 206 WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsA 285 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSA 285 (439)
T ss_pred HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHH
Confidence 999999999999999999999999999999999999888888889999999999998754 3579999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhc
Q 004384 311 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 381 (757)
Q Consensus 311 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 381 (757)
+|| ||++.|++|.|+...|..+++.|+...+. ..+.|+..|++.|+||+|+|+.-+++.+.++.+++..
T Consensus 286 IRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvq 355 (439)
T KOG0739|consen 286 IRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQ 355 (439)
T ss_pred HHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhh
Confidence 999 99999999999999999999999876654 3456899999999999999999999999888877654
No 50
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1e-34 Score=314.90 Aligned_cols=246 Identities=43% Similarity=0.726 Sum_probs=222.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||||++.+++.|++.+.+|+.+|++|+.+|+.+++++||+||||||||++++++|++++..++.+.++++..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
++.|+.+..++.+|..+....|+||||||+|.++.++.... +....+++.+++..++++....++.||++||+++.+
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~L 297 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTL 297 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhC
Confidence 99999999999999999999999999999999987763322 223346677888888888777789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
|+++.|++||+..|+++.|+..+|..|++.+++++.+..+.++..++..++||+++|+.++|++|++.++++..
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~------ 371 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR------ 371 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999988889999999999999999999999999998887642
Q ss_pred chhhhHHHhhhcccchhhhhhhhccC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
..++.+||..|+..+
T Consensus 372 -----------~~i~~~df~~A~~~v 386 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTV 386 (398)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 346778888887664
No 51
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.8e-34 Score=297.46 Aligned_cols=227 Identities=19% Similarity=0.232 Sum_probs=179.1
Q ss_pred cccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHh-----CCCeEEEEeccc
Q 004384 460 FGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ-----SAPCVLFFDELD 534 (757)
Q Consensus 460 ~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~-----~~p~il~iDEid 534 (757)
.++++|.+++||||||||||++|+++|++++.+|+.+++++|.++|+|++|+.+|.+|+.|+. .+||||||||||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEID 222 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLD 222 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhh
Confidence 578999999999999999999999999999999999999999999999999999999999975 469999999999
Q ss_pred chhcccCCCCCCCCcchHHHH-HHHHHhhcCC------------CCCCeEEEEeeCCCCCCCCccccCCCccceEEEecC
Q 004384 535 SIATQRGSSVGDAGGAADRVL-NQLLTEMDGM------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 535 ~l~~~r~~~~~~~~~~~~~~~-~~ll~~ld~~------------~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~ 601 (757)
+++++|+.. ......+++ .+||++||+. ....+|+||+|||+|+.|||||+||||||+.+ +.
T Consensus 223 A~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~l 297 (413)
T PLN00020 223 AGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WA 297 (413)
T ss_pred hcCCCCCCC---CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CC
Confidence 999998642 123345565 8999999863 23567999999999999999999999999864 58
Q ss_pred CCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccc
Q 004384 602 PDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG----FSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDED 677 (757)
Q Consensus 602 p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g----~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (757)
|+.++|.+||+.++++..++ ..|+..|+..+.| |+||--..+..++....+.+. ..+.......+... .
T Consensus 298 Pd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~---g~~~~~~~l~~~~~---~ 370 (413)
T PLN00020 298 PTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEV---GVENLGKKLVNSKK---G 370 (413)
T ss_pred CCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHh---hHHHHHHHHhcCCC---C
Confidence 99999999999999998876 4788888888765 677766777766666665553 11111111111000 0
Q ss_pred ccccccccccHHHHHHHHhhc
Q 004384 678 AAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 678 ~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...-..+.+|.+.+.++-..+
T Consensus 371 ~p~f~~~~~t~~~l~~~g~~l 391 (413)
T PLN00020 371 PPTFEPPKMTLEKLLEYGNML 391 (413)
T ss_pred CCCCCCCCCCHHHHHHHHHHH
Confidence 011124578888888887666
No 52
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-34 Score=321.14 Aligned_cols=229 Identities=46% Similarity=0.796 Sum_probs=214.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
.+++|.|+.|++++++.|.|++.. |++|+.|+.+|+..|+|+||+||||||||.||+++|++.+.+|+.+++++++..+
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~ 384 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMF 384 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHh
Confidence 458999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCC---C-CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE---K-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~---~-~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
.|....+++.+|+.++...|||+||||||.+...++ . ..++-....++||+..||++....+|+|+++||+++.+|
T Consensus 385 ~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld 464 (774)
T KOG0731|consen 385 VGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILD 464 (774)
T ss_pred cccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccC
Confidence 998899999999999999999999999999998884 2 233445677899999999999988999999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 382 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 382 (757)
+++.|||||++.+.++.|+..+|.+|++.|.+..++. ++.++..++..|+||+|+||.++|.+|+..+.++...
T Consensus 465 ~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~ 539 (774)
T KOG0731|consen 465 PALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLR 539 (774)
T ss_pred HHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccC
Confidence 9999999999999999999999999999999999885 7788999999999999999999999999998887543
No 53
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=293.73 Aligned_cols=228 Identities=46% Similarity=0.758 Sum_probs=212.1
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhC-CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
-.++|+||||+++.++++++.+.+|+++|++|..-+ ..+++||||+||||||||++|+++|.+.+..|+.|..+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 357899999999999999999999999999996433 4688999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCe--EEEEEecCCCCCCCH
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH--VIVIGATNRPNSIDP 309 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~--v~vI~atn~~~~ld~ 309 (757)
+.|+.++.++.+|-.|..-+|+||||||+|+.+..++....+....+.++++.+-|++.++.+ |+|+||||+|.++|.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 999999999999999999999999999999999988655566677888999999999987765 999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcc
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMD 382 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~ 382 (757)
++.| |+.+.++++.|+..+|.+||+..++.-.+.+++|+..++..|+||+|.||..+|..|+...++..+.
T Consensus 247 AiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~ 317 (386)
T KOG0737|consen 247 AIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLV 317 (386)
T ss_pred HHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999999999999999999999988876543
No 54
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.8e-33 Score=332.24 Aligned_cols=266 Identities=50% Similarity=0.852 Sum_probs=235.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
.+.+.|+||+|++..++.|++.+.+|+.++++++.+++.++.++|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC-chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHH
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 310 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~ 310 (757)
|.|+++..++.+|+.|....||||||||+|.+++.++.. ......+++.+|+..|+++....+++||++||+++.+|++
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~a 606 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPA 606 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHh
Confidence 999999999999999999999999999999999887643 2345678999999999998888899999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccc-h
Q 004384 311 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED-E 389 (757)
Q Consensus 311 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~-~ 389 (757)
+.|++||+..++++.|+.++|.+||+.+.+++++..++++..++..++||+|+|+..+|++|++.++++......... .
T Consensus 607 llRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~ 686 (733)
T TIGR01243 607 LLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLE 686 (733)
T ss_pred hcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhh
Confidence 999999999999999999999999999999999988899999999999999999999999999988886543211000 0
Q ss_pred hhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 390 TIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
...........++.+||..++....|+.
T Consensus 687 ~~~~~~~~~~~i~~~~f~~al~~~~ps~ 714 (733)
T TIGR01243 687 VGEEEFLKDLKVEMRHFLEALKKVKPSV 714 (733)
T ss_pred cccccccccCcccHHHHHHHHHHcCCCC
Confidence 0000111235688999999999888764
No 55
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=4.4e-33 Score=304.23 Aligned_cols=250 Identities=50% Similarity=0.830 Sum_probs=223.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..+++.|+||+|++++++.+++.+.+|+.+|+.|+.+|+.++.+|||+||||||||++|+++|.+++.+++.+++.++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.+.|+.+..++.+|+.+....|++|||||+|.++..+..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~l 283 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDIL 283 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhC
Confidence 999999999999999999999999999999999877643321 12244556677778887777789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
|+++.|++||+..++++.|+.++|.+|++.+++++.+..+.++..++..++||+++|+.++|++|++.++++..
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~------ 357 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDR------ 357 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999888888999999999999999999999999998876531
Q ss_pred chhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
..++.+||..|+..+.++.
T Consensus 358 -----------~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 358 -----------TEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred -----------CCcCHHHHHHHHHHHhccc
Confidence 2477889999988876654
No 56
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=303.93 Aligned_cols=246 Identities=47% Similarity=0.781 Sum_probs=220.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..+..+|+||||++++++.|++++.+|+.+|++|+++++.++.++||+||||||||++|+++|++++..++.+.++++.+
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.+.|+....++.+|..+....|+|+||||+|.++.++..... ....+.+.+++..++++....++.||++||+++.+
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~L 335 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESL 335 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHh
Confidence 999999999999999999999999999999999877643221 12234556677788887777789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
|+++.|++||++.|+++.|+..+|.+|++.+++++.+..++++..++..++||+++|+.++|.+|++.++++..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r------ 409 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR------ 409 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC------
Confidence 99999999999999999999999999999999999988889999999999999999999999999998887642
Q ss_pred chhhhHHHhhhcccchhhhhhhhccC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
..++.+||..|+..+
T Consensus 410 -----------~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 410 -----------MKVTQADFRKAKEKV 424 (438)
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 346777887777654
No 57
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=5e-32 Score=318.84 Aligned_cols=444 Identities=23% Similarity=0.353 Sum_probs=299.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++++.|.+++++++.+.+.. ....+++|+||||||||++++.+|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 344678899999999887776644 234579999999999999999999987 667888
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004384 223 INGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 300 (757)
Q Consensus 223 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~a 300 (757)
++...+. .++.|+.+.+++.+|+.+....++||||||+|.+...+....+..+ ..+.|...+ .++.+.+||+
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~--~~~~L~~~l----~~g~i~~Iga 317 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD--ASNLLKPAL----SSGKLRCIGS 317 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH--HHHHHHHHH----hCCCeEEEEe
Confidence 8888776 4788999999999999998778899999999999876543222221 122233333 3568999999
Q ss_pred cCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC----CC-CCchhhhHHhHhcCCCchhH-----H
Q 004384 301 TNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM----KL-SDDVDLERIAKDTHGYVGAD-----L 365 (757)
Q Consensus 301 tn~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~----~l-~~~~~l~~la~~t~g~~~~d-----l 365 (757)
|+..+ ..|+++.| ||. .+.++.|+.+++.+||+.....+ .+ -.+..+..++..++.|.+.. .
T Consensus 318 Tt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ka 394 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKA 394 (731)
T ss_pred cCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHH
Confidence 98632 56999998 895 79999999999999998654332 11 23445777777777776542 3
Q ss_pred HHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCC--CCC-c----eeeeeeccCCccccccchhh
Q 004384 366 AALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSN--PSA-L----RETVVEVPNVSWEDIGGLEN 438 (757)
Q Consensus 366 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--p~~-~----~~~~~~~~~~~~~~i~g~~~ 438 (757)
..++.+++....-.... .....++.+++...+.... |.. . .+........-...+.|+++
T Consensus 395 i~lld~a~a~~~~~~~~-------------~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ 461 (731)
T TIGR02639 395 IDVIDEAGASFRLRPKA-------------KKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDE 461 (731)
T ss_pred HHHHHHhhhhhhcCccc-------------ccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHH
Confidence 45555554321110000 0112345555555544331 100 0 00000111112344667777
Q ss_pred HHHHhhhhccCCCCChhhhhhccc----CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc-----------
Q 004384 439 VKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT----------- 503 (757)
Q Consensus 439 ~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~----------- 503 (757)
+++.+.+.+... +.|+ +|...+||+||||||||++|+++|..++.+++.++++++..
T Consensus 462 ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 462 AIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred HHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 766666654421 1222 23334899999999999999999999999999999887643
Q ss_pred -cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCeEEE
Q 004384 504 -MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFI 573 (757)
Q Consensus 504 -~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~v 573 (757)
.|+|..+ .+.+.+..+..+.+|+||||||.+ ...+.+.||+.||... +.++.+|
T Consensus 534 ~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka--------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ii 597 (731)
T TIGR02639 534 PGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKA--------------HPDIYNILLQVMDYATLTDNNGRKADFRNVIL 597 (731)
T ss_pred CCCcccch--hhHHHHHHHhCCCeEEEEechhhc--------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEE
Confidence 2333222 234556667778899999999975 3568889999888641 2357889
Q ss_pred EeeCCCCC-------------------------CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC-------CCC
Q 004384 574 IGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVS 621 (757)
Q Consensus 574 i~tTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~ 621 (757)
|+|||... .+.|.|+. |||.+|.|.+.+.++..+|++..+++. ++.
T Consensus 598 i~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 598 IMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 99998731 24566765 999999999999999999999988542 122
Q ss_pred CccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 622 KDVD---LRALAKY--TQGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 622 ~~~d---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
-.++ ++.|++. ...|..+.|+.+++.-...++.+.+
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 1222 4455553 3456677888888777777666554
No 58
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-33 Score=313.96 Aligned_cols=250 Identities=50% Similarity=0.837 Sum_probs=231.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..+.++|+|+||++..++.+++.+.+|+.+++.|...++.++.++||+||||||||+||+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHH
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 310 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~ 310 (757)
+|.|+++++++.+|..|+...||||||||+|.+++.++...+....+++.+++..++++....+|+||++||+|+.+|++
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a 394 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPA 394 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHh
Confidence 99999999999999999999999999999999999988766666689999999999999999999999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC--CCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccc
Q 004384 311 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 388 (757)
Q Consensus 311 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 388 (757)
+.|+|||+..++++.|+..+|.+|++.+++... +..++++..+++.+.||+++|+..+|++|++.++++..
T Consensus 395 ~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~------- 467 (494)
T COG0464 395 LLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR------- 467 (494)
T ss_pred hcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-------
Confidence 999999999999999999999999999998554 45788999999999999999999999999998887642
Q ss_pred hhhhHHHhhhcccchhhhhhhhccCCCC
Q 004384 389 ETIDAEILNSMAVSNEHFQTALGTSNPS 416 (757)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~al~~~~p~ 416 (757)
...++.+||..++....|+
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCC
Confidence 2357888999998887665
No 59
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-31 Score=308.49 Aligned_cols=447 Identities=21% Similarity=0.309 Sum_probs=292.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEEec
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCING 225 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~v~~ 225 (757)
.++.+.|-++.+.++.+.+... ...++||+||||||||++++.++..+ +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r~-------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCRR-------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhcc-------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 4667899999988888776541 24578999999999999999999764 344555555
Q ss_pred hhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 226 PEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 226 ~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
..+. ..+.|+.+.+++.+|..+....++||||||+|.++..+....+..+ +.+++..+..++.+.+|++|+.
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d------~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD------AANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH------HHHHHHHHHhCCCeEEEecCCh
Confidence 5554 3577889999999999988888899999999999877643222221 2223333335678999999997
Q ss_pred CC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCch-----hhhHHhHhcCC-----CchhHHHHH
Q 004384 304 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV-----DLERIAKDTHG-----YVGADLAAL 368 (757)
Q Consensus 304 ~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~-----~l~~la~~t~g-----~~~~dl~~l 368 (757)
++ ..|+++.| ||. .|.++.|+.+++..||+.+...+....++ .+...+..+.. +.+.....+
T Consensus 325 ~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidl 401 (758)
T PRK11034 325 QEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_pred HHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHH
Confidence 64 56999998 995 79999999999999999776554433332 23344443444 344456777
Q ss_pred HHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCC--CCC-ce----eeeeeccCCccccccchhhHHH
Q 004384 369 CTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSN--PSA-LR----ETVVEVPNVSWEDIGGLENVKR 441 (757)
Q Consensus 369 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--p~~-~~----~~~~~~~~~~~~~i~g~~~~k~ 441 (757)
+.+|+....-... .. ....++.+++...+.... |.. +. +........--..+.|++++++
T Consensus 402 ldea~a~~~~~~~---~~----------~~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~ 468 (758)
T PRK11034 402 IDEAGARARLMPV---SK----------RKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIE 468 (758)
T ss_pred HHHHHHhhccCcc---cc----------cccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHH
Confidence 7777653210000 00 001133333333322211 100 00 0000011111234789999999
Q ss_pred HhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc-----cccCchhHH----
Q 004384 442 ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-----MWFGESEAN---- 512 (757)
Q Consensus 442 ~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-----~~~g~~e~~---- 512 (757)
.+.+.+....... .. .-+|...+||+||||||||++|+++|..++.+|+.++++++.. +++|.....
T Consensus 469 ~l~~~i~~~~~gl---~~-~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~ 544 (758)
T PRK11034 469 ALTEAIKMSRAGL---GH-EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544 (758)
T ss_pred HHHHHHHHHhccc---cC-CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCccccc
Confidence 8888775321100 00 1133446999999999999999999999999999999887642 233322111
Q ss_pred -HHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCeEEEEeeCCCC--
Q 004384 513 -VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-- 580 (757)
Q Consensus 513 -i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~tTn~~-- 580 (757)
-..+....+..+.+|+||||||.+ ...+.+.||+.||... +.+++++|+|||.-
T Consensus 545 ~~g~L~~~v~~~p~sVlllDEieka--------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~ 610 (758)
T PRK11034 545 QGGLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_pred ccchHHHHHHhCCCcEEEeccHhhh--------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHH
Confidence 123444456667799999999996 3568899999988431 12578999999932
Q ss_pred -----------------------CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc-------CCCCCccC---HH
Q 004384 581 -----------------------DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-------SPVSKDVD---LR 627 (757)
Q Consensus 581 -----------------------~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~~~~d---~~ 627 (757)
..+.|.|+. |+|.+|.|++.+.++..+|+...+++ .++.-.++ ++
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 135577776 99999999999999999999877743 23332233 34
Q ss_pred HHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 628 ALAKYT--QGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 628 ~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
.|++.. ..|-.+.|+.+++.-...++.+.+
T Consensus 689 ~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 689 WLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 455432 345567888887777776666553
No 60
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-32 Score=300.90 Aligned_cols=231 Identities=47% Similarity=0.782 Sum_probs=216.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
...+.|.|+.|.++.++.+.++++. ++.|..|..+|..-|++|||+||||||||+||+++|++.+.+|+.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 3568999999999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
++|-...++|.+|.+|+++.|||+||||||++...++.. ..+......+||+..||++..+..|+++++||+|+-+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 999999999999999999999999999999999988532 33444568899999999999888999999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDV 383 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~ 383 (757)
++|.|++||++.+.++.||...|.+|++.|.++.++..++++..+|+.|.||+++|+.+++.+|++.+.++....
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~ 377 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKE 377 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999888876443
No 61
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=7.9e-31 Score=290.12 Aligned_cols=242 Identities=24% Similarity=0.404 Sum_probs=209.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
+..+|+||||++..++.+++.... ++....++|+.++++|||+||||||||++|+++|++++.+++.+++..+.+++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 456899999999999988765432 23445678999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC-CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHh
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK-THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 311 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l 311 (757)
.|+++.+++.+|+.+....||||||||+|.++.++.. ..+....+++.+++.+|+.. ..+++||+|||+++.+|+++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~--~~~V~vIaTTN~~~~Ld~al 377 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK--KSPVFVVATANNIDLLPLEI 377 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC--CCceEEEEecCChhhCCHHH
Confidence 9999999999999999999999999999999875432 23445678888999988853 45799999999999999999
Q ss_pred hccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC--CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccch
Q 004384 312 RRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL--SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 389 (757)
Q Consensus 312 ~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l--~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 389 (757)
.|+|||+..++++.|+.++|.+|++.++++... ..+.++..++..|+||+|+|+.++|.+|...++.+.
T Consensus 378 lR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~--------- 448 (489)
T CHL00195 378 LRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK--------- 448 (489)
T ss_pred hCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC---------
Confidence 999999999999999999999999999887643 246789999999999999999999999988776432
Q ss_pred hhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 390 TIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
..++.++|..++....|.+
T Consensus 449 ---------~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 449 ---------REFTTDDILLALKQFIPLA 467 (489)
T ss_pred ---------CCcCHHHHHHHHHhcCCCc
Confidence 2367889999999888864
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=2.4e-30 Score=282.03 Aligned_cols=245 Identities=53% Similarity=0.863 Sum_probs=215.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..+++.|+||+|++++++.|++.+.+|+.+|+.|..+|+.+++++||+||||||||++++++|+.++..++.+.+.++..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.+.|+....++.+|+.+....|++|||||+|.+...+..... ....+.+.+++..++++....++.||++||.++.+
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~l 274 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDIL 274 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhC
Confidence 899988889999999999999999999999999876543221 12234456667777777666789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
|+++.+++||++.++++.|+.++|.+|++.+...+.+..+.++..++..++||+++|+..+|.+|++.++++..
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~------ 348 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREER------ 348 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC------
Confidence 99999999999999999999999999999999988888878899999999999999999999999998887532
Q ss_pred chhhhHHHhhhcccchhhhhhhhcc
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGT 412 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~ 412 (757)
..++.+||..|+..
T Consensus 349 -----------~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 349 -----------DYVTMDDFIKAVEK 362 (364)
T ss_pred -----------CccCHHHHHHHHHH
Confidence 24677777777654
No 63
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=1.9e-30 Score=293.44 Aligned_cols=244 Identities=44% Similarity=0.754 Sum_probs=217.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
.++++|+||+|+++.++++++++.. +++++.+..++...++++||+||||||||++++++|++.+.+++.++++++...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 4678999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
+.|.....++.+|+.+....|+||||||+|.+..+++.. ......+++.+|+..|+++....+++||++||+++.+|
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld 207 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD 207 (495)
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence 999999999999999999999999999999999876542 12334577888999999998888999999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 388 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 388 (757)
+++.|++||+..++++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..+|++|+..+.++..
T Consensus 208 ~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~------- 280 (495)
T TIGR01241 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK------- 280 (495)
T ss_pred HHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999999999888777788899999999999999999999999877665431
Q ss_pred hhhhHHHhhhcccchhhhhhhhccC
Q 004384 389 ETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
..++.+++..++...
T Consensus 281 ----------~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 281 ----------TEITMNDIEEAIDRV 295 (495)
T ss_pred ----------CCCCHHHHHHHHHHH
Confidence 235667777776654
No 64
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=263.22 Aligned_cols=230 Identities=43% Similarity=0.761 Sum_probs=207.4
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
+...+++|+++||+-.++..+++.+++|+.+|++|.++||.+|.+++||||||+|||.+|+++|..++..|+.+..+.+.
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHH---HHhhcccCCCeEEEEEecCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL---TLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll---~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
+++.|++...+++.|..|+...||++|+||||++...+......-++.+..+|+ +.|+++....+|-+|.|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 999999999999999999999999999999999998774433333444555554 45566666778999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
++|+|.|+||+++.+++|.|++..|..|++.|...+......+.+.+.+..+||.++|+...|.++.+.+++.
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 9999999999999999999999999999999998888878888999999999999999999999998655543
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=4.9e-30 Score=282.93 Aligned_cols=221 Identities=43% Similarity=0.715 Sum_probs=194.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------E
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------F 220 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------~ 220 (757)
..++++|+||||+++++++|++.+.+|+.+|++|+.+++.+++++|||||||||||++++++|++++.. |
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 457889999999999999999999999999999999999999999999999999999999999998543 5
Q ss_pred EEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCC-chHHHHHHHHHHHHHhhcccCCCeE
Q 004384 221 FCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKT-HGEVERRIVSQLLTLMDGLKSRAHV 295 (757)
Q Consensus 221 ~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~~v 295 (757)
+.+.++++.+++.|+.+..++.+|+.+... .|+|+||||+|.++..++.. .++.+.+++.+|+..|+++....++
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 667788889999999999999999988763 69999999999999877543 3566788899999999999888899
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC-CCCCCchhhhHHhHhcCCCchhHHHHHHHHHHH
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 374 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 374 (757)
+||++||+++.|||++.|++||+..|+++.|+.++|.+|++.++.. +++ + .....+.|+.++++..+++++..
T Consensus 335 iVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~----~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 335 IVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--D----ADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred EEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--h----HHHHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988753 333 1 22345789999999999999876
Q ss_pred HHH
Q 004384 375 QCI 377 (757)
Q Consensus 375 ~~~ 377 (757)
..+
T Consensus 409 ~~~ 411 (512)
T TIGR03689 409 HLY 411 (512)
T ss_pred HHh
Confidence 544
No 66
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.9e-29 Score=286.16 Aligned_cols=243 Identities=42% Similarity=0.736 Sum_probs=214.2
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
..++|+|++|+++.++.+.+++.. +++++.|..++...++++||+||||||||++|+++|++.+.+++.++++++...+
T Consensus 178 ~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 457899999999999999999887 8889999999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCH
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~ 309 (757)
.|.....++.+|+.+....||||||||+|.+...++.. ........+.+|+..++++....+++||++||+++.+|+
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ 336 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDA 336 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhh
Confidence 88888889999999999999999999999998766432 223345677888999999888889999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccch
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 389 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 389 (757)
++.|++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++|+..++++|+..+.++..
T Consensus 337 ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~-------- 408 (638)
T CHL00176 337 ALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK-------- 408 (638)
T ss_pred hhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC--------
Confidence 999999999999999999999999999999887777788999999999999999999999999887765432
Q ss_pred hhhHHHhhhcccchhhhhhhhccC
Q 004384 390 TIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
..++.+++..++...
T Consensus 409 ---------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 ---------ATITMKEIDTAIDRV 423 (638)
T ss_pred ---------CCcCHHHHHHHHHHH
Confidence 235566676666543
No 67
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.96 E-value=7.5e-28 Score=284.70 Aligned_cols=455 Identities=21% Similarity=0.302 Sum_probs=281.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~----------~~~~~ 222 (757)
.+-.++++.|.++.+.++.+.+.. ....+++|+||||||||++++.+|..+. ..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 445678899999987777665543 2235789999999999999999998762 44566
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 223 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 223 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
++...+. ..+.|+.+.+++.+|+.+.. ..+.||||||+|.+...++... ..+ .. +++.....++.+.+||
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~~d--~~----n~Lkp~l~~G~l~~Ig 321 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-QGD--AA----NLLKPALARGELRTIA 321 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-ccc--HH----HHhhHHhhCCCeEEEE
Confidence 6666554 36789999999999999865 4678999999999987654221 111 11 2233333567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC----C-CCchhhhHHhHhcCCCchh-----H
Q 004384 300 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----L-SDDVDLERIAKDTHGYVGA-----D 364 (757)
Q Consensus 300 atn~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~----l-~~~~~l~~la~~t~g~~~~-----d 364 (757)
+|+..+ .+|++|.| || ..|.++.|+.+++..||+.+.+.+. + ..+..+..++..+++|... .
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDK 398 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDK 398 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccH
Confidence 998643 47999999 99 5799999999999999876654332 1 1344577778888777653 2
Q ss_pred HHHHHHHHHHHH-HHhhcccccc-------------------------cch-h---hhHH------Hhhhc---------
Q 004384 365 LAALCTEAALQC-IREKMDVIDL-------------------------EDE-T---IDAE------ILNSM--------- 399 (757)
Q Consensus 365 l~~l~~~a~~~~-~~~~~~~~~~-------------------------~~~-~---~~~~------~~~~~--------- 399 (757)
...++.+|+... +......... ... . .... ....+
T Consensus 399 AIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (852)
T TIGR03345 399 AVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKE 478 (852)
T ss_pred HHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443211 1100000000 000 0 0000 00000
Q ss_pred -------------------------------------------------ccchhhhhhhhccCC--CCC-cee----eee
Q 004384 400 -------------------------------------------------AVSNEHFQTALGTSN--PSA-LRE----TVV 423 (757)
Q Consensus 400 -------------------------------------------------~~~~~~~~~al~~~~--p~~-~~~----~~~ 423 (757)
.++.+++...+.... |.. +.. ...
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~e~~~l~ 558 (852)
T TIGR03345 479 LVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGRMVRDEIEAVL 558 (852)
T ss_pred HHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCchhhchhHHHHHH
Confidence 000000000000000 000 000 000
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhccc---CCCC-ceeeecCCCCChhHHHHHHHHHh---CCceEEE
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM---SPSK-GVLFYGPPGCGKTLLAKAIANEC---QANFISV 496 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~---~~~~-gilL~GppGtGKT~la~~la~~~---~~~~i~v 496 (757)
.....--..+.|++++.+.+.+.+.... .|+ ..|. .+||+||||||||.+|+++|..+ ...++.+
T Consensus 559 ~l~~~L~~~v~GQ~~Av~~v~~~i~~~~--------~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~ 630 (852)
T TIGR03345 559 SLPDRLAERVIGQDHALEAIAERIRTAR--------AGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITI 630 (852)
T ss_pred HHHHHhcCeEcChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEE
Confidence 0000011346677777766666654321 122 1233 38999999999999999999987 4578899
Q ss_pred eCccccc------------cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC
Q 004384 497 KGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 564 (757)
Q Consensus 497 ~~~~l~~------------~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 564 (757)
+++++.. .|+|..+. +.+.+..++.+++|++||||+.. ...+.+.|++.||.
T Consensus 631 dmse~~~~~~~~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka--------------~~~v~~~Llq~ld~ 694 (852)
T TIGR03345 631 NMSEFQEAHTVSRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA--------------HPDVLELFYQVFDK 694 (852)
T ss_pred eHHHhhhhhhhccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc--------------CHHHHHHHHHHhhc
Confidence 9877642 25554332 23455567788899999999863 45778888888875
Q ss_pred CC---------CCCeEEEEeeCCCCC-----------------------------CCCccccCCCccceEEEecCCCHHH
Q 004384 565 MS---------AKKTVFIIGATNRPD-----------------------------IIDPALLRPGRLDQLIYIPLPDEDS 606 (757)
Q Consensus 565 ~~---------~~~~v~vi~tTn~~~-----------------------------~ld~allrpgRf~~~i~~~~p~~~~ 606 (757)
.. +..+.+||+|||... .+.|+|+. |++ +|.|.+.+.++
T Consensus 695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~ 771 (852)
T TIGR03345 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDV 771 (852)
T ss_pred ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHH
Confidence 42 125789999999521 14566776 998 89999999999
Q ss_pred HHHHHHHhhccC--------CCCCccC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHH
Q 004384 607 RHQIFKACLRKS--------PVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 607 r~~Il~~~l~~~--------~~~~~~d---~~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
..+|++..+... ++.-.++ ++.|++... .|-.+.++++++.-...++.+.+
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999998877542 3322233 445666543 25678888888877777776654
No 68
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.96 E-value=1.2e-27 Score=284.70 Aligned_cols=456 Identities=22% Similarity=0.339 Sum_probs=289.7
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEEe
Q 004384 155 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCIN 224 (757)
Q Consensus 155 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~v~ 224 (757)
-.++++.|.+++++++.+++.. ....+++|+||||||||++++.+|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3578899999999999888764 234579999999999999999999886 36788898
Q ss_pred chhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004384 225 GPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 302 (757)
Q Consensus 225 ~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn 302 (757)
...+. .+|.|+++.+++.+|+.+....++||||||+|.+...++...+ . . ..+++.....++.+.+||+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~--~----~a~lLkp~l~rg~l~~IgaTt 315 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-I--D----AANILKPALARGELQCIGATT 315 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-c--c----HHHHhHHHHhCCCcEEEEeCC
Confidence 88776 4778999999999999998888899999999999876543221 1 1 112233333467889999998
Q ss_pred CCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc------CCCCCCchhhhHHhHhcCCCchh-----HHH
Q 004384 303 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK------NMKLSDDVDLERIAKDTHGYVGA-----DLA 366 (757)
Q Consensus 303 ~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~------~~~l~~~~~l~~la~~t~g~~~~-----dl~ 366 (757)
..+ ..|+++.+ ||. .+.++.|+.++...|++.... ++.+ .+..+..++..+.+|.+. ...
T Consensus 316 ~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i-~deal~~i~~ls~~yi~~r~lPdkai 391 (821)
T CHL00095 316 LDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSI-SDKALEAAAKLSDQYIADRFLPDKAI 391 (821)
T ss_pred HHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhccCccccCchHHH
Confidence 764 46899998 884 578999999998888874321 2222 334467777777777653 233
Q ss_pred HHHHHHHHHHHHhhcccccccchhh---------------------------------hHHH-------h-------hhc
Q 004384 367 ALCTEAALQCIREKMDVIDLEDETI---------------------------------DAEI-------L-------NSM 399 (757)
Q Consensus 367 ~l~~~a~~~~~~~~~~~~~~~~~~~---------------------------------~~~~-------~-------~~~ 399 (757)
.++.+|+....-.... .......+ .... . ...
T Consensus 392 dlld~a~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (821)
T CHL00095 392 DLLDEAGSRVRLINSR-LPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQSKKTEEEKRLEVP 470 (821)
T ss_pred HHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 4555544322110000 00000000 0000 0 001
Q ss_pred ccchhhhhhhhccCC--CCC-cee----eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeec
Q 004384 400 AVSNEHFQTALGTSN--PSA-LRE----TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYG 472 (757)
Q Consensus 400 ~~~~~~~~~al~~~~--p~~-~~~----~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~G 472 (757)
.++.+++...+.... |.. +.. ........--..+.|++++.+.+...+...... +.. .-+|...+||+|
T Consensus 471 ~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g---l~~-~~~p~~~~lf~G 546 (821)
T CHL00095 471 VVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG---LKN-PNRPIASFLFSG 546 (821)
T ss_pred ccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc---ccC-CCCCceEEEEEC
Confidence 123333322222110 100 000 000001111245778888888877766432110 000 112333589999
Q ss_pred CCCCChhHHHHHHHHHh---CCceEEEeCccccc------------cccCchhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 473 PPGCGKTLLAKAIANEC---QANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 473 ppGtGKT~la~~la~~~---~~~~i~v~~~~l~~------------~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
|+|||||++|++||..+ ..+++.++++++.. .|+|..+ .+.+....+..+.+|++|||+|..
T Consensus 547 p~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka- 623 (821)
T CHL00095 547 PTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKA- 623 (821)
T ss_pred CCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhC-
Confidence 99999999999999986 35788888877632 2344322 234667777777899999999984
Q ss_pred cccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCeEEEEeeCCCCCC--------------------------
Q 004384 538 TQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPDI-------------------------- 582 (757)
Q Consensus 538 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~tTn~~~~-------------------------- 582 (757)
...+.+.|++.||... +.++.++|+|||....
T Consensus 624 -------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~ 690 (821)
T CHL00095 624 -------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRL 690 (821)
T ss_pred -------------CHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHH
Confidence 4678899999988532 2357899999986321
Q ss_pred -----------CCccccCCCccceEEEecCCCHHHHHHHHHHhhccC-------CCCCccC---HHHHHHH--cCCCCHH
Q 004384 583 -----------IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKY--TQGFSGA 639 (757)
Q Consensus 583 -----------ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~--~~g~sg~ 639 (757)
+.|.|+. |+|.+|.|.+.+.++..+|++..+.+. ++.-.++ ...|++. ...|-.+
T Consensus 691 ~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR 768 (821)
T CHL00095 691 SNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGAR 768 (821)
T ss_pred HHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChh
Confidence 2245665 999999999999999999998887542 2222222 3455554 2345577
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004384 640 DITEICQRACKYAIRENI 657 (757)
Q Consensus 640 di~~~~~~a~~~a~~~~~ 657 (757)
.|+.+++.-...++.+.+
T Consensus 769 ~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 769 PLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 788777777666666553
No 69
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.7e-29 Score=262.59 Aligned_cols=261 Identities=41% Similarity=0.664 Sum_probs=218.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
...+++.|+|++|++..++.+.+++.+|+..|.+|..+. .+.+++||.||||+|||+|++++|.+.+..|+.++++.+.
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLt 223 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLT 223 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhh
Confidence 355789999999999999999999999999999998753 5678999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--CCCeEEEEEecCCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRPNSI 307 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~v~vI~atn~~~~l 307 (757)
++|.|+.+..++.+|+-|+..+|+|+||||+|.++..+.....+..+++..+++-.+++.. ...+|+||||||.|+.+
T Consensus 224 sK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 224 SKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred hhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 9999999999999999999999999999999999999865555666777777766665543 34589999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC-CCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
|.+++| ||...+++|.|+.+.|..+++.++...+ ...+.++..+++.|+||++.|+.++|++|++...+........
T Consensus 304 Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~~~ 381 (428)
T KOG0740|consen 304 DEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTTDL 381 (428)
T ss_pred HHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccchhh
Confidence 999999 9999999999999999999998876653 3345689999999999999999999999998666554332000
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
+.+. ......++..+|..++....|+.
T Consensus 382 --~~~~--~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 382 --EFID--ADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred --hhcc--hhccCCCCcchHHHHHHhhcccc
Confidence 0111 11234466777777777766653
No 70
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.96 E-value=1.2e-26 Score=276.99 Aligned_cols=460 Identities=22% Similarity=0.336 Sum_probs=285.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++.+.|.++.+.++.+.++. ....+++|+||||||||++++.+|..+ +..++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 344678899999988877777654 234578999999999999999999876 456777
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 223 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 223 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
++...+. .++.|+.+..++.+|..+.. ..+.||||||+|.+...+.... .. .. .+++.....++.+.+||
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~--d~----~~~Lk~~l~~g~i~~Ig 307 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM--DA----GNMLKPALARGELHCIG 307 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh--HH----HHHhchhhhcCceEEEE
Confidence 7766664 46788999999999998865 4589999999999986543221 11 11 12333334567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CchhhhHHhHhcCCCchh-----H
Q 004384 300 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVGA-----D 364 (757)
Q Consensus 300 atn~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~~-----d 364 (757)
+|+..+ ..|+++.| ||. .+.++.|+.+++..|++.+...+... .+..+...+..+++|... -
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdk 384 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDK 384 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchH
Confidence 998763 47999999 895 58999999999999998776555432 233466667777776543 2
Q ss_pred HHHHHHHHHHHHHHhhcc-------------cc-------ccc-ch-----------hh--------------hHHH--h
Q 004384 365 LAALCTEAALQCIREKMD-------------VI-------DLE-DE-----------TI--------------DAEI--L 396 (757)
Q Consensus 365 l~~l~~~a~~~~~~~~~~-------------~~-------~~~-~~-----------~~--------------~~~~--~ 396 (757)
...++.+|+...--.... .. ... .. .+ ..+. .
T Consensus 385 Aidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (852)
T TIGR03346 385 AIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAI 464 (852)
T ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443221100000 00 000 00 00 0000 0
Q ss_pred ----------hh-------------------------------------------------cccchhhhhhhhccC--CC
Q 004384 397 ----------NS-------------------------------------------------MAVSNEHFQTALGTS--NP 415 (757)
Q Consensus 397 ----------~~-------------------------------------------------~~~~~~~~~~al~~~--~p 415 (757)
.. ..++.+++...+... .|
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i~~v~~~~tgip 544 (852)
T TIGR03346 465 QGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEIAEVVSRWTGIP 544 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHHHHHHHHhcCCC
Confidence 00 000111111111000 00
Q ss_pred CCc-e----eeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-
Q 004384 416 SAL-R----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC- 489 (757)
Q Consensus 416 ~~~-~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~- 489 (757)
... . +........-...+.|++.+.+.+.+.+...... +.. .-+|...+||+||||||||++|+++|..+
T Consensus 545 ~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g---l~~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 545 VSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG---LSD-PNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc---CCC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 000 0 0000000111344667777666666655421100 000 11234459999999999999999999986
Q ss_pred --CCceEEEeCcccccc------------ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHH
Q 004384 490 --QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 555 (757)
Q Consensus 490 --~~~~i~v~~~~l~~~------------~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~ 555 (757)
+.+++.++++++... |+|..+ .+.+....+..+.+|+|||||+.+ ...+.
T Consensus 621 ~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllDeieka--------------~~~v~ 684 (852)
T TIGR03346 621 DDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFDEVEKA--------------HPDVF 684 (852)
T ss_pred CCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEeccccC--------------CHHHH
Confidence 468899988775331 233222 133455556677789999999874 46778
Q ss_pred HHHHHhhcCCC---------CCCeEEEEeeCCCCC-------------------------CCCccccCCCccceEEEecC
Q 004384 556 NQLLTEMDGMS---------AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 556 ~~ll~~ld~~~---------~~~~v~vi~tTn~~~-------------------------~ld~allrpgRf~~~i~~~~ 601 (757)
+.||+.|+... +.++.+||+|||... .+.|.|+. |||.++.|.+
T Consensus 685 ~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~P 762 (852)
T TIGR03346 685 NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHP 762 (852)
T ss_pred HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCC
Confidence 88888886531 235788999999832 13356665 9999999999
Q ss_pred CCHHHHHHHHHHhhcc-------CCCCCccC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 602 PDEDSRHQIFKACLRK-------SPVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 602 p~~~~r~~Il~~~l~~-------~~~~~~~d---~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
++.+...+|+...+.. .++...++ ++.|++.. ..+..+.|+++++......+.+.+
T Consensus 763 L~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 763 LGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999887742 22222233 44566542 256789999999988888877664
No 71
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.95 E-value=2e-26 Score=273.54 Aligned_cols=456 Identities=21% Similarity=0.342 Sum_probs=271.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++++.|.++.+.++.++++. ....+++|+||||||||++++.+|..+ +..++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 344678899999988877777654 224579999999999999999999987 567788
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 223 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 223 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
++...+. .++.|+.+.+++.+|+.... ..++||||||+|.+...+.... ..+. .+++.....++.+.+||
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~------~~~lkp~l~~g~l~~Ig 312 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDA------GNMLKPALARGELHCVG 312 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhH------HHHhcchhhcCCCeEEE
Confidence 8777665 45788999999999998644 5688999999999987654322 2211 12233344567899999
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CchhhhHHhHhcCCCch-----hH
Q 004384 300 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVG-----AD 364 (757)
Q Consensus 300 atn~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~-----~d 364 (757)
+|+..+ ..|+++.| ||. .|.++.|+.+++..|++.+...+... .+..+...+..+++|.. ..
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdk 389 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDK 389 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChH
Confidence 999876 47999999 896 58899999999999998776544322 22234444455555542 11
Q ss_pred HHHHHHHHHHHH-------------HHhhc-------ccccccc------------hhh--------------hHH--Hh
Q 004384 365 LAALCTEAALQC-------------IREKM-------DVIDLED------------ETI--------------DAE--IL 396 (757)
Q Consensus 365 l~~l~~~a~~~~-------------~~~~~-------~~~~~~~------------~~~--------------~~~--~~ 396 (757)
...++..++... +.+.. .....+. ..+ ... ..
T Consensus 390 Ai~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el 469 (857)
T PRK10865 390 AIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASL 469 (857)
T ss_pred HHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222111000 00000 0000000 000 000 00
Q ss_pred ----------hh-----------------------------------------------cccchhhhhhhhccCC--CCC
Q 004384 397 ----------NS-----------------------------------------------MAVSNEHFQTALGTSN--PSA 417 (757)
Q Consensus 397 ----------~~-----------------------------------------------~~~~~~~~~~al~~~~--p~~ 417 (757)
.. ..++.+++...+.... |..
T Consensus 470 ~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~ 549 (857)
T PRK10865 470 SGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVS 549 (857)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHHHHHHHHCCCch
Confidence 00 0000000000000000 000
Q ss_pred -ce----eeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhccc----CCCCceeeecCCCCChhHHHHHHHHH
Q 004384 418 -LR----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANE 488 (757)
Q Consensus 418 -~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gilL~GppGtGKT~la~~la~~ 488 (757)
+. +........-...+.|++.+.+.+...+.... .|+ +|...++|+||||||||++|+++|..
T Consensus 550 ~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~--------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 550 RMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSR--------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred hhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHH--------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 00 00000001112345666666666655543211 111 12235899999999999999999987
Q ss_pred h---CCceEEEeCcccccc------------ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHH
Q 004384 489 C---QANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 553 (757)
Q Consensus 489 ~---~~~~i~v~~~~l~~~------------~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 553 (757)
+ +.+++.++++++... |+|..+ -..+....+..+.+++||||++.+ ...
T Consensus 622 l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~--~g~l~~~v~~~p~~vLllDEieka--------------~~~ 685 (857)
T PRK10865 622 MFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE--GGYLTEAVRRRPYSVILLDEVEKA--------------HPD 685 (857)
T ss_pred hhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch--hHHHHHHHHhCCCCeEEEeehhhC--------------CHH
Confidence 6 457888988776431 222211 112333344555689999999874 356
Q ss_pred HHHHHHHhhcCCC---------CCCeEEEEeeCCCC-------------------------CCCCccccCCCccceEEEe
Q 004384 554 VLNQLLTEMDGMS---------AKKTVFIIGATNRP-------------------------DIIDPALLRPGRLDQLIYI 599 (757)
Q Consensus 554 ~~~~ll~~ld~~~---------~~~~v~vi~tTn~~-------------------------~~ld~allrpgRf~~~i~~ 599 (757)
+.+.|++.|+... +.++.+||+|||.. ..+.|+|+. |+|.++.|
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF 763 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF 763 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec
Confidence 7788888886421 23467899999973 124567776 99999999
Q ss_pred cCCCHHHHHHHHHHhhccC-------CCCCccC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 600 PLPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 600 ~~p~~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
.+++.+...+|++.++.+. ++.-.++ +..|++.. ..|..+.|+.+++.-....+.+.+
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888552 2322333 33344321 223467888887777666666543
No 72
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9e-27 Score=263.35 Aligned_cols=455 Identities=22% Similarity=0.353 Sum_probs=294.0
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 223 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~v 223 (757)
.-.++.+.|-++++.++.+++.... .++-+|+|+||+|||.++..+|..+ +..++.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 3456779999999999888886532 3457899999999999999999875 3445666
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004384 224 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 301 (757)
Q Consensus 224 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~at 301 (757)
+-..+. .+|.|+.+++++.+++......+.||||||+|.+.......++.++ ..+++.....++.+-+||+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~D------AaNiLKPaLARGeL~~IGAT 306 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMD------AANLLKPALARGELRCIGAT 306 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccc------hhhhhHHHHhcCCeEEEEec
Confidence 655554 4789999999999999999888999999999999877643221121 22344444467788899988
Q ss_pred CCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CchhhhHHhHhcCCCch-----hHHH
Q 004384 302 NRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTHGYVG-----ADLA 366 (757)
Q Consensus 302 n~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~g~~~-----~dl~ 366 (757)
+.-+ .-|++|.| || ..|.+..|+.++...||+....++... .+.-+...+..++.|.. .-..
T Consensus 307 T~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 307 TLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred cHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 7543 34899998 89 678999999999999998665443322 22235555555554433 2334
Q ss_pred HHHHHHHHHHHHhhcccccc------------cchhh-------hHHHhh---hc--------------ccchhhhhhhh
Q 004384 367 ALCTEAALQCIREKMDVIDL------------EDETI-------DAEILN---SM--------------AVSNEHFQTAL 410 (757)
Q Consensus 367 ~l~~~a~~~~~~~~~~~~~~------------~~~~~-------~~~~~~---~~--------------~~~~~~~~~al 410 (757)
.++.+|+....-.......+ +.... ...... .. .++.+++...+
T Consensus 384 DLiDeA~a~~~l~~~~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv 463 (786)
T COG0542 384 DLLDEAGARVRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEVDEDDIAEVV 463 (786)
T ss_pred HHHHHHHHHHHhcccCCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHH
Confidence 45555543221110000000 00000 000000 00 02222333222
Q ss_pred ccCC--CCC-c----eeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhccc----CCCCceeeecCCCCChh
Q 004384 411 GTSN--PSA-L----RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKT 479 (757)
Q Consensus 411 ~~~~--p~~-~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gilL~GppGtGKT 479 (757)
.... |.. + .+........--..+.|++++...+.+.|... +.|+ +|..++||.||+|+|||
T Consensus 464 ~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--------RaGL~dp~rPigsFlF~GPTGVGKT 535 (786)
T COG0542 464 ARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--------RAGLGDPNRPIGSFLFLGPTGVGKT 535 (786)
T ss_pred HHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEeeCCCcccHH
Confidence 2211 110 0 00111112222345788888888887776532 2232 34446999999999999
Q ss_pred HHHHHHHHHhC---CceEEEeCccccc------------cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCC
Q 004384 480 LLAKAIANECQ---ANFISVKGPELLT------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV 544 (757)
Q Consensus 480 ~la~~la~~~~---~~~i~v~~~~l~~------------~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~ 544 (757)
.||++||..+. ..++++++|++.. .|||..+ =..+-+..|+.+.|||+||||+.
T Consensus 536 ELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEK--------- 604 (786)
T COG0542 536 ELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEK--------- 604 (786)
T ss_pred HHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhh---------
Confidence 99999999986 7899999999864 3666544 24566777888899999999988
Q ss_pred CCCCcchHHHHHHHHHhhcCCC---------CCCeEEEEeeCCCC----------------------------CCCCccc
Q 004384 545 GDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP----------------------------DIIDPAL 587 (757)
Q Consensus 545 ~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~tTn~~----------------------------~~ld~al 587 (757)
+++.++|-||+.||... +.++.+||+|||-- ..+.|+|
T Consensus 605 -----AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEF 679 (786)
T COG0542 605 -----AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEF 679 (786)
T ss_pred -----cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHH
Confidence 67899999999998642 23578999999842 1234677
Q ss_pred cCCCccceEEEecCCCHHHHHHHHHHhhccC-------CCCCccC---HHHHHHHc--CCCCHHHHHHHHHHHHHHHHHH
Q 004384 588 LRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-------PVSKDVD---LRALAKYT--QGFSGADITEICQRACKYAIRE 655 (757)
Q Consensus 588 lrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~~--~g~sg~di~~~~~~a~~~a~~~ 655 (757)
+. |+|.+|.|.+.+.+...+|++..+... .+.-.++ .+.|++.. ..|-++-++.+++.-....+.+
T Consensus 680 LN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 680 LN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred Hh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 76 999999999999999999999888542 2222222 34455433 3456666766666555554444
Q ss_pred H
Q 004384 656 N 656 (757)
Q Consensus 656 ~ 656 (757)
.
T Consensus 758 ~ 758 (786)
T COG0542 758 E 758 (786)
T ss_pred H
Confidence 3
No 73
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=2.3e-27 Score=245.08 Aligned_cols=214 Identities=21% Similarity=0.297 Sum_probs=170.3
Q ss_pred Ccccc-cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccc
Q 004384 156 GYDDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG 234 (757)
Q Consensus 156 ~~~~i-~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g 234 (757)
+|+++ ||+--...-+..+....- ......+++++|.+++|+||||||||++|+++|++++..++.+++.++.++|.|
T Consensus 113 ~f~~~~g~~~~~p~f~dk~~~hi~--kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vG 190 (413)
T PLN00020 113 SFDNLVGGYYIAPAFMDKVAVHIA--KNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAG 190 (413)
T ss_pred chhhhcCccccCHHHHHHHHHHHH--hhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCC
Confidence 45555 676554444443332111 112234678999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHh-----cCCeEEEEcccccccCCCCCCchHHHHHHH-HHHHHHhhcc------------cCCCeEE
Q 004384 235 ESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIV-SQLLTLMDGL------------KSRAHVI 296 (757)
Q Consensus 235 ~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~-~~Ll~~l~~~------------~~~~~v~ 296 (757)
++++.++.+|+.|.. ..||||||||||.+++.++.....+..+++ .+|++++|+. .....|.
T Consensus 191 EsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~ 270 (413)
T PLN00020 191 EPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVP 270 (413)
T ss_pred cHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCce
Confidence 999999999999975 469999999999999998755555655555 8999998863 2345799
Q ss_pred EEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCC----CchhHHHHHHHHH
Q 004384 297 VIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG----YVGADLAALCTEA 372 (757)
Q Consensus 297 vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g----~~~~dl~~l~~~a 372 (757)
||+|||+|+.|||+|+|+|||++.+ +.|+.++|.+|++.+++...+. ..++..++..+.| |.|+--.....++
T Consensus 271 VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~ 347 (413)
T PLN00020 271 IIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDE 347 (413)
T ss_pred EEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999965 6899999999999999988775 4678888888877 4555444444444
Q ss_pred HH
Q 004384 373 AL 374 (757)
Q Consensus 373 ~~ 374 (757)
..
T Consensus 348 v~ 349 (413)
T PLN00020 348 VR 349 (413)
T ss_pred HH
Confidence 43
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=2.2e-27 Score=274.35 Aligned_cols=226 Identities=44% Similarity=0.758 Sum_probs=205.8
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 233 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~ 233 (757)
...|+|+.|++..++.+.+++.+ +..+..+..++...+++++|+||||||||+++++++++++.+++.++++++...+.
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 34688999999999999999987 66778888888888899999999999999999999999999999999999998888
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHH
Q 004384 234 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA 310 (757)
Q Consensus 234 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~ 310 (757)
+.....++.+|+.+....|||+||||+|.+..+++.. ......+.+++|+..|+++.....++||++||+|+.+|++
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 9888999999999999999999999999998876542 2234456788999999999888899999999999999999
Q ss_pred hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhh
Q 004384 311 LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 380 (757)
Q Consensus 311 l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 380 (757)
+.|++||++.+.++.|+.++|.+|++.++++.++..+.++..+++.+.||+++|+.++|++|+..+.+..
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998888899999999999999999999999998877653
No 75
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=2.7e-27 Score=281.78 Aligned_cols=197 Identities=21% Similarity=0.276 Sum_probs=165.9
Q ss_pred cChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc----------cc--------------
Q 004384 179 RHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL----------AG-------------- 234 (757)
Q Consensus 179 ~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~----------~g-------------- 234 (757)
+.+.....+|+.+++||||+||||||||.||+++|++.+.+++.+++++++..+ .|
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 334466788999999999999999999999999999999999999999988643 11
Q ss_pred -----------------hh--HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc---CC
Q 004384 235 -----------------ES--ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---SR 292 (757)
Q Consensus 235 -----------------~~--~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---~~ 292 (757)
.. ..+++.+|+.|+...||||||||||.+..+.. ....+.+|+..|++.. ..
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds------~~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES------NYLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc------ceehHHHHHHHhccccccCCC
Confidence 11 22478899999999999999999999987621 1123678888998753 34
Q ss_pred CeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHH--hcCCCCCCc-hhhhHHhHhcCCCchhHHHHHH
Q 004384 293 AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH--TKNMKLSDD-VDLERIAKDTHGYVGADLAALC 369 (757)
Q Consensus 293 ~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~--~~~~~l~~~-~~l~~la~~t~g~~~~dl~~l~ 369 (757)
.+|+||||||+|+.+||||.|||||++.|.++.|+..+|.+++..+ .+++.+..+ +++..+|..|.||+|+|++++|
T Consensus 1771 ~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLv 1850 (2281)
T CHL00206 1771 RNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALT 1850 (2281)
T ss_pred CCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHH
Confidence 5799999999999999999999999999999999999999988754 455666543 5789999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 004384 370 TEAALQCIREKM 381 (757)
Q Consensus 370 ~~a~~~~~~~~~ 381 (757)
.+|+..++++..
T Consensus 1851 NEAaliAirq~k 1862 (2281)
T CHL00206 1851 NEALSISITQKK 1862 (2281)
T ss_pred HHHHHHHHHcCC
Confidence 999999887754
No 76
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9.1e-24 Score=210.69 Aligned_cols=188 Identities=30% Similarity=0.487 Sum_probs=151.8
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcc-cCCCCceeeecCCCCChhHHHHHHHHHh---------CCceEEEeC
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFG-MSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKG 498 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~-~~~~~gilL~GppGtGKT~la~~la~~~---------~~~~i~v~~ 498 (757)
-|+.++.-.++|+.|...+...+...+.-.+.+ +...+-+||+||||||||+|+|++|+.+ ....+.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 488888888899988776543322211111111 2344559999999999999999999986 245789999
Q ss_pred ccccccccCchhHHHHHHHHHHHhC-----CCeEEEEecccchhcccCCC-CCCCCcchHHHHHHHHHhhcCCCCCCeEE
Q 004384 499 PELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIATQRGSS-VGDAGGAADRVLNQLLTEMDGMSAKKTVF 572 (757)
Q Consensus 499 ~~l~~~~~g~~e~~i~~lf~~a~~~-----~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 572 (757)
..+.+||++++.+.+..+|++.... ..-.++|||+++|+..|.+. ........-|++|.+|++||.+....+|+
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvl 299 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVL 299 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEE
Confidence 9999999999999999999987643 23467799999999988432 22223446799999999999999999999
Q ss_pred EEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC
Q 004384 573 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 618 (757)
Q Consensus 573 vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 618 (757)
+++|+|--+.||.|+.. |-|-+.|+++|+...+++|++.++.++
T Consensus 300 iL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL 343 (423)
T KOG0744|consen 300 ILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEEL 343 (423)
T ss_pred EEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHH
Confidence 99999999999999998 999999999999999999999998653
No 77
>CHL00181 cbbX CbbX; Provisional
Probab=99.89 E-value=2.4e-22 Score=209.97 Aligned_cols=216 Identities=22% Similarity=0.297 Sum_probs=165.6
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCC---CceeeecCCCCChhHHHHHHHHHhC-------CceEEEeCc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGP 499 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gilL~GppGtGKT~la~~la~~~~-------~~~i~v~~~ 499 (757)
+.+++|++++|+++.+.+.+. .........|+.++ .+++|+||||||||++|+++|..+. .+++.++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~-~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALL-LIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHH-HHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 457999999999999987763 33445555676554 2389999999999999999998752 368999999
Q ss_pred cccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 500 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
++.+.|+|+++..++.+|+.|.. +||||||+|.+...++. .....++++.|+..|+... .+++||+|++.
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~g---gVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~ 170 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMG---GVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQR--DDLVVIFAGYK 170 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccC---CEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcCC--CCEEEEEeCCc
Confidence 99999999999888899988754 59999999999754321 2356788999999998643 46778888764
Q ss_pred CC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHH------cCCCC-HHHHHHHHH
Q 004384 580 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY------TQGFS-GADITEICQ 646 (757)
Q Consensus 580 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~------~~g~s-g~di~~~~~ 646 (757)
.. .++|++.| ||+.+|+|++|+.+++.+|++.++++....-+.+ ...+... ...|. ++++++++.
T Consensus 171 ~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve 248 (287)
T CHL00181 171 DRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALD 248 (287)
T ss_pred HHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 22 34699998 9999999999999999999999998754332222 2223322 23455 899999999
Q ss_pred HHHHHHHHHHHH
Q 004384 647 RACKYAIRENIE 658 (757)
Q Consensus 647 ~a~~~a~~~~~~ 658 (757)
.|......+...
T Consensus 249 ~~~~~~~~r~~~ 260 (287)
T CHL00181 249 RARMRQANRIFE 260 (287)
T ss_pred HHHHHHHHHHHc
Confidence 998888777653
No 78
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.7e-22 Score=211.13 Aligned_cols=222 Identities=22% Similarity=0.341 Sum_probs=172.8
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccC
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 507 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 507 (757)
-+|+.++-..++|+.|.+-+..+.+..+-+++.|..+.+|.|||||||||||+++.|+|++++...+-+..+++..
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~---- 273 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL---- 273 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----
Confidence 6788888888999999999988899999999999999999999999999999999999999999998887766432
Q ss_pred chhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCC---CC-cchHHHHHHHHHhhcCCCCCC--eEEEEeeCCCCC
Q 004384 508 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD---AG-GAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPD 581 (757)
Q Consensus 508 ~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~---~~-~~~~~~~~~ll~~ld~~~~~~--~v~vi~tTn~~~ 581 (757)
.++ ++.+...+... +||+|++||.-+.-|+..... .. ....-.++-||+.+||+-+.. --|||.|||.++
T Consensus 274 n~d--Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 274 DSD--LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred cHH--HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 223 88888776655 699999999987655433221 11 123356889999999986543 678999999999
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCC-CCCccCHHHHHHHcCCCCHHHHHHHHH-H--HHHHHHHHHH
Q 004384 582 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITEICQ-R--ACKYAIRENI 657 (757)
Q Consensus 582 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~d~~~la~~~~g~sg~di~~~~~-~--a~~~a~~~~~ 657 (757)
.|||||+||||+|.+||++.-+.++-+.+++.++.-.. ...--+++.+...++ .|+||+....- . .+..|+++.+
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~lm~~~~dad~~lk~Lv 428 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEELMKNKNDADVALKGLV 428 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHHHhhccccHHHHHHHHH
Confidence 99999999999999999999999999999999996532 111123344433333 69999986432 2 4556666554
Q ss_pred H
Q 004384 658 E 658 (757)
Q Consensus 658 ~ 658 (757)
+
T Consensus 429 ~ 429 (457)
T KOG0743|consen 429 E 429 (457)
T ss_pred H
Confidence 4
No 79
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-21 Score=200.58 Aligned_cols=209 Identities=27% Similarity=0.479 Sum_probs=158.8
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccC
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 507 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 507 (757)
-.+++++....+++.|.++...... .+....|.++|+||||||||||+.|+-||..+|..+-.+.|.|+.-. -.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaN-----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~ 425 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATAN-----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GA 425 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhcc-----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-ch
Confidence 3456666666666666554321110 01133566789999999999999999999999999988888887531 22
Q ss_pred chhHHHHHHHHHHHhCCC-eEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCcc
Q 004384 508 ESEANVREIFDKARQSAP-CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 586 (757)
Q Consensus 508 ~~e~~i~~lf~~a~~~~p-~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~a 586 (757)
+.-..|..+|+++.++.. -++||||+|.++..|+.... +...+..+|.||-.-. ...+.++++.+||+|..+|.|
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktym--SEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhh--cHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhHH
Confidence 445679999999988764 47899999999999976532 3456778888875532 345678999999999999999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-----------------------ccC----HHHHHHHcCCCCHH
Q 004384 587 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-----------------------DVD----LRALAKYTQGFSGA 639 (757)
Q Consensus 587 llrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-----------------------~~d----~~~la~~~~g~sg~ 639 (757)
+-. |||.+|+||+|..++|..++..|+.++-+.. ..+ +.+.|+.|+||||+
T Consensus 502 V~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 502 VND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 998 9999999999999999999999997642210 112 56788999999999
Q ss_pred HHHHHHHHH
Q 004384 640 DITEICQRA 648 (757)
Q Consensus 640 di~~~~~~a 648 (757)
+|..++-..
T Consensus 580 EiakLva~v 588 (630)
T KOG0742|consen 580 EIAKLVASV 588 (630)
T ss_pred HHHHHHHHH
Confidence 999887543
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=6.5e-22 Score=207.06 Aligned_cols=213 Identities=21% Similarity=0.298 Sum_probs=165.6
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCC---CCceeeecCCCCChhHHHHHHHHHhC-------CceEEEeCccc
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISVKGPEL 501 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~gilL~GppGtGKT~la~~la~~~~-------~~~i~v~~~~l 501 (757)
+++|++++|+++.+.+.+ ...+..+...|+.+ ..+++|+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999998877 44555666677664 34799999999999999999998763 37999999999
Q ss_pred cccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC--
Q 004384 502 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-- 579 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~-- 579 (757)
.+.|+|+++..++.+|+.|.. ++|||||++.+.+.++. .....++++.|++.|+.. ..+++||+|++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHH
Confidence 999999999999999998754 69999999998654321 235678889999999864 356777777764
Q ss_pred CC---CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHc------CC-CCHHHHHHHHHHH
Q 004384 580 PD---IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYT------QG-FSGADITEICQRA 648 (757)
Q Consensus 580 ~~---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~------~g-~sg~di~~~~~~a 648 (757)
++ .++|++.+ ||+..|+||+|+.+++..|++.++++....-+.+ +..++.+. +. -+++++++++..|
T Consensus 172 ~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 172 MDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 33 34899999 9999999999999999999999998864332222 23333331 22 2589999999999
Q ss_pred HHHHHHHHH
Q 004384 649 CKYAIRENI 657 (757)
Q Consensus 649 ~~~a~~~~~ 657 (757)
......+..
T Consensus 250 ~~~~~~r~~ 258 (284)
T TIGR02880 250 RLRQANRLF 258 (284)
T ss_pred HHHHHHHHh
Confidence 887776653
No 81
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=1.8e-21 Score=202.39 Aligned_cols=215 Identities=21% Similarity=0.297 Sum_probs=160.0
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCC---CceeeecCCCCChhHHHHHHHHHh-------CCceEEEeCc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPS---KGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 499 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~---~gilL~GppGtGKT~la~~la~~~-------~~~~i~v~~~ 499 (757)
+++++|++++|+.+.+.+.++... ......|+.+. .+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467999999999999988776443 22223455433 358999999999999999999874 2478889999
Q ss_pred cccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 500 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
++.+.|+|+++..++.+|+.+. .+||||||+|.|... . ........++.|+..|+... .++++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~--~----~~~~~~~~i~~Ll~~~e~~~--~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG--G----EKDFGKEAIDTLVKGMEDNR--NEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC--C----ccchHHHHHHHHHHHHhccC--CCEEEEecCCc
Confidence 9999999999999999998875 369999999999631 1 11245678899999998753 34556655543
Q ss_pred CC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHH---------cCCCCHHHHHHH
Q 004384 580 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY---------TQGFSGADITEI 644 (757)
Q Consensus 580 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~---------~~g~sg~di~~~ 644 (757)
.+ .++|++.+ ||+..|+||+++.+++.+|++.+++.....-+.+ +..+++. ...-+++.++++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 22 36889988 9999999999999999999999998765432222 3333321 112478899999
Q ss_pred HHHHHHHHHHHHHH
Q 004384 645 CQRACKYAIRENIE 658 (757)
Q Consensus 645 ~~~a~~~a~~~~~~ 658 (757)
+..|......+.+.
T Consensus 231 ~e~a~~~~~~r~~~ 244 (261)
T TIGR02881 231 IEKAIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHHHHhc
Confidence 98888777666543
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.87 E-value=1e-21 Score=182.42 Aligned_cols=130 Identities=47% Similarity=0.794 Sum_probs=118.3
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCC-CeEEEEecccchhcccCCCCCC
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGD 546 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~~~ 546 (757)
+||+||||||||++|+.+|..++.+++.++++++.+.+.+++++.+..+|+.+.... |+|+||||+|.+.+... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999999999999999999999999988 99999999999999871 22
Q ss_pred CCcchHHHHHHHHHhhcCCCCC-CeEEEEeeCCCCCCCCccccCCCccceEEEecC
Q 004384 547 AGGAADRVLNQLLTEMDGMSAK-KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 547 ~~~~~~~~~~~ll~~ld~~~~~-~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~ 601 (757)
......+++++|+..|+..... .+++||+|||.++.++++++| +||+..|++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3456788999999999998765 579999999999999999998 89999999984
No 83
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=1.1e-18 Score=161.86 Aligned_cols=130 Identities=49% Similarity=0.831 Sum_probs=117.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcC-CeEEEEcccccccCCCCCCchH
Q 004384 195 ILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGE 273 (757)
Q Consensus 195 vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~ 273 (757)
|||+||||||||++++.+|..++.+++.+++.++.+.+.++....+..+|+.+.... |+++||||+|.+.++.......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 699999999999999999999999999999999998888999999999999998887 9999999999999887445566
Q ss_pred HHHHHHHHHHHHhhcccCC-CeEEEEEecCCCCCCCHHhhccCCcceEEEeCC
Q 004384 274 VERRIVSQLLTLMDGLKSR-AHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 325 (757)
Q Consensus 274 ~~~~~~~~Ll~~l~~~~~~-~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~ 325 (757)
....+.+.|+..++..... .++++|++||.++.+++.+.+ +||+..++++.
T Consensus 81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred ccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 7788899999999987765 569999999999999999998 89999998863
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=99.77 E-value=1.3e-17 Score=174.37 Aligned_cols=212 Identities=17% Similarity=0.304 Sum_probs=157.0
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCC---CceEEEEcCCCCCHHHHHHHHHHHhC-------CeEEEEech
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGP 226 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~---~~~vLL~Gp~GtGKTtLar~la~~l~-------~~~~~v~~~ 226 (757)
+.+++|++++|++|++++.+ +..+++...+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 34799999999999999987 44567777777754 44599999999999999999998752 358899999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC--
Q 004384 227 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 304 (757)
Q Consensus 227 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~-- 304 (757)
++.+.+.|+.+..+..+|+.+. ++||||||++.+...++ ..+....+...|+.+|+... ..++||++++..
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~--~~~~vI~ag~~~~~ 173 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQR--DDLVVIFAGYKDRM 173 (287)
T ss_pred HHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHH
Confidence 9999999988877888888764 36999999999875432 22345677788888887643 356777766532
Q ss_pred C---CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC--CCCchhhhHHhH----h--cCCCc-hhHHHHHHHHH
Q 004384 305 N---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK--LSDDVDLERIAK----D--THGYV-GADLAALCTEA 372 (757)
Q Consensus 305 ~---~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--l~~~~~l~~la~----~--t~g~~-~~dl~~l~~~a 372 (757)
+ .++|++++ ||+..++++.++.+++.+|+..+++... +.++. ...+.. . ...|. ++.+..++..+
T Consensus 174 ~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 174 DKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 1 34689988 9999999999999999999998876533 33332 222222 1 23344 68888888888
Q ss_pred HHHHHHh
Q 004384 373 ALQCIRE 379 (757)
Q Consensus 373 ~~~~~~~ 379 (757)
..+...+
T Consensus 251 ~~~~~~r 257 (287)
T CHL00181 251 RMRQANR 257 (287)
T ss_pred HHHHHHH
Confidence 7655444
No 85
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.75 E-value=2.6e-17 Score=172.39 Aligned_cols=210 Identities=18% Similarity=0.273 Sum_probs=155.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCC---CceEEEEcCCCCCHHHHHHHHHHHhC-------CeEEEEechhh
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 228 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~---~~~vLL~Gp~GtGKTtLar~la~~l~-------~~~~~v~~~~l 228 (757)
+++|+++++++|.+++.+ +..++.+..+|+.+ +.+++|+||||||||++|+++|..+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999999988 66777888888764 45899999999999999999988763 36889999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC--CC-
Q 004384 229 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR--PN- 305 (757)
Q Consensus 229 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~--~~- 305 (757)
.+.+.|+....++.+|+.+. +++|||||++.+...+. .......+...|+..|+... ..++||++++. ++
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~--~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQR--DDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCC--CCEEEEEeCCcHHHHH
Confidence 88888988888888888764 36999999999864432 22344567788888887543 46677776653 22
Q ss_pred --CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhc------C-CCchhHHHHHHHHHHHH
Q 004384 306 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDT------H-GYVGADLAALCTEAALQ 375 (757)
Q Consensus 306 --~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t------~-g~~~~dl~~l~~~a~~~ 375 (757)
.++|++++ ||...+++|.++.+++..|++.+++..... ....+..+.... + --+++.+.+++..+..+
T Consensus 175 ~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 175 FFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 34789998 999999999999999999999887654321 122233333321 1 12356777777777655
Q ss_pred HHH
Q 004384 376 CIR 378 (757)
Q Consensus 376 ~~~ 378 (757)
...
T Consensus 253 ~~~ 255 (284)
T TIGR02880 253 QAN 255 (284)
T ss_pred HHH
Confidence 443
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.75 E-value=7e-17 Score=167.98 Aligned_cols=175 Identities=22% Similarity=0.322 Sum_probs=131.8
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCC---CCceEEEEcCCCCCHHHHHHHHHHHh-------CCeEEEEech
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGP 226 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~---~~~~vLL~Gp~GtGKTtLar~la~~l-------~~~~~~v~~~ 226 (757)
+++++|++++|++|++++.++... ......|+. ...+++|+|||||||||+|+++|+.+ ...++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 567999999999999998875433 223334543 34569999999999999999999875 2357888999
Q ss_pred hhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC--
Q 004384 227 EIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP-- 304 (757)
Q Consensus 227 ~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~-- 304 (757)
++.+.+.|+....+..+|+.+. ++||||||+|.+....+ .......+..|+..++.... .+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~~---~~~~~~~i~~Ll~~~e~~~~--~~~vila~~~~~~ 155 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGGE---KDFGKEAIDTLVKGMEDNRN--EFVLILAGYSDEM 155 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCCc---cchHHHHHHHHHHHHhccCC--CEEEEecCCcchh
Confidence 9999999998888888888764 46999999999974321 12334556778888876533 44555444322
Q ss_pred ---CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC
Q 004384 305 ---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM 342 (757)
Q Consensus 305 ---~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~ 342 (757)
..++|++++ ||...+.++.++.+++.+|++.++...
T Consensus 156 ~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 156 DYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred HHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 236788887 898899999999999999999877654
No 87
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.74 E-value=2.9e-17 Score=160.18 Aligned_cols=188 Identities=26% Similarity=0.414 Sum_probs=124.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
.-+++|++|+++++..+.-.+...... -.+..+++||||||+||||||+.+|++++.+|..++++.+-
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r--------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~---- 87 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKR--------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE---- 87 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCT--------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC------
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhc--------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh----
Confidence 357899999999999876554421111 12345699999999999999999999999999999887542
Q ss_pred CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----C-----------CCe
Q 004384 507 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A-----------KKT 570 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~-----------~~~ 570 (757)
....+..++..... ..|||+|||+++- ..+...|+..|+... + ..+
T Consensus 88 --k~~dl~~il~~l~~--~~ILFIDEIHRln--------------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 88 --KAGDLAAILTNLKE--GDILFIDEIHRLN--------------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp --SCHHHHHHHHT--T--T-EEEECTCCC----------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred --hHHHHHHHHHhcCC--CcEEEEechhhcc--------------HHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 12345555555543 3699999999973 345566777777532 1 135
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHH
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~ 647 (757)
+.+|+||++...|.+.+.. ||..+..+..++.++..+|++...+...+.-+.+ ...+|..+.| +++=..++++.
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~r 224 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRR 224 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 8899999999999999998 9999999999999999999999888877654333 5667777765 66655555443
No 88
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.74 E-value=3.6e-17 Score=193.25 Aligned_cols=165 Identities=24% Similarity=0.310 Sum_probs=129.4
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
-.++++.|.++....+.+.+.. ....+++|+||||||||++++++|..+ +..++.++
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 3567788888777666554432 234579999999999999999999986 67788998
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
...+. .+|.|+.++.++.+|+.+....++||||||+|.+.+.+..+. + ...+.+.|+..|. ++.+.+|+
T Consensus 246 ~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~----~-~~~~~~~L~~~l~----~g~i~~Ig 316 (731)
T TIGR02639 246 MGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSG----G-SMDASNLLKPALS----SGKLRCIG 316 (731)
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCC----c-cHHHHHHHHHHHh----CCCeEEEE
Confidence 88887 589999999999999999877889999999999987643221 1 1223344444443 45789999
Q ss_pred eCCCC-----CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc
Q 004384 576 ATNRP-----DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK 617 (757)
Q Consensus 576 tTn~~-----~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 617 (757)
|||.. ..+|+|+.| ||. .|+++.|+.+++.+|++.....
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 99973 367999999 997 7999999999999999987754
No 89
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=3.9e-17 Score=193.88 Aligned_cols=164 Identities=27% Similarity=0.393 Sum_probs=127.5
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc--------
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 502 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 502 (757)
+++.|++++++.+.+.+...... +-.....++|+||||||||++|+++|+.++.+|+.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 35889999999998876543211 111223699999999999999999999999999998765432
Q ss_pred -ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC-----CC--------CC
Q 004384 503 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MS--------AK 568 (757)
Q Consensus 503 -~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~--------~~ 568 (757)
..|+|.....+...|..+....| |+||||||.+.+.... ...+.||..||. +. +.
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~----------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~ 461 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG----------DPASALLEVLDPEQNNAFSDHYLDVPFDL 461 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC----------CHHHHHHHhcCHHhcCccccccCCceecc
Confidence 36888888888899998877766 8999999999753211 123556666652 11 22
Q ss_pred CeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 004384 569 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 569 ~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 615 (757)
+++++|+|||.++.|++++++ ||+ +|.|+.|+.+++.+|++.++
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 578999999999999999999 996 88999999999999999887
No 90
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=8.2e-16 Score=164.29 Aligned_cols=192 Identities=24% Similarity=0.346 Sum_probs=134.6
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCc
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGE 508 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~ 508 (757)
+|++++|++++++.|...+...... -..+.+++|+||||||||++|+++|++++.++..+.++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR--------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 6899999999999988776422111 123456999999999999999999999988876666543321
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCeEE
Q 004384 509 SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTVF 572 (757)
Q Consensus 509 ~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v~ 572 (757)
...+...+... ..+.++||||++.+.+. ..+.|+..|+... ....+.
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~--------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPA--------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHH--------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 12233333332 24579999999998532 1223333333211 122478
Q ss_pred EEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004384 573 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKY 651 (757)
Q Consensus 573 vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~ 651 (757)
+|++||++..+++++.+ ||...+.+++|+.+++.+|++..+....+.-+ ..+..+++.+.|. ++.+.++|..+...
T Consensus 132 li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~ 208 (305)
T TIGR00635 132 LVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDF 208 (305)
T ss_pred EEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHH
Confidence 99999999999999988 99999999999999999999988876544322 2366788888774 47777787766544
Q ss_pred HH
Q 004384 652 AI 653 (757)
Q Consensus 652 a~ 653 (757)
|.
T Consensus 209 a~ 210 (305)
T TIGR00635 209 AQ 210 (305)
T ss_pred HH
Confidence 43
No 91
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.70 E-value=7.4e-16 Score=165.83 Aligned_cols=233 Identities=22% Similarity=0.329 Sum_probs=162.7
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccC
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 507 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 507 (757)
.+|++++|.++.++.+...+..... .-.++.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~--------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~----- 88 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK--------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE----- 88 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-----
Confidence 4799999999999998877643111 113456799999999999999999999999888777766432
Q ss_pred chhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCeE
Q 004384 508 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 571 (757)
Q Consensus 508 ~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v 571 (757)
....+..++.... .++++||||||.+... ..+. +...|+... ...++
T Consensus 89 -~~~~l~~~l~~l~--~~~vl~IDEi~~l~~~-----------~~e~---l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 -KPGDLAAILTNLE--EGDVLFIDEIHRLSPV-----------VEEI---LYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred -ChHHHHHHHHhcc--cCCEEEEecHhhcchH-----------HHHH---HHHHHHhcceeeeeccCccccceeecCCCc
Confidence 2234455555443 4579999999998431 1222 333333211 11247
Q ss_pred EEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004384 572 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRACK 650 (757)
Q Consensus 572 ~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~~ 650 (757)
.+|++||++..+++++.+ ||...+.+++|+.+++.+|++.......+.-+. -+..+++.+.| +.+.+.++++.+..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~ 228 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRD 228 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHH
Confidence 889999999999999887 999999999999999999999998776554322 26778888876 44777777776555
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHHhh
Q 004384 651 YAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR---SVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 651 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~---s~~~~~~~~y~~~~~~~~~ 719 (757)
.|..+. ...|+.+++..++..+.. .+++.+.+.+..+...|..
T Consensus 229 ~a~~~~--------------------------~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~ 274 (328)
T PRK00080 229 FAQVKG--------------------------DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGG 274 (328)
T ss_pred HHHHcC--------------------------CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCC
Confidence 544321 135788888888877633 3556666666556666543
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.69 E-value=2.2e-16 Score=183.89 Aligned_cols=198 Identities=21% Similarity=0.261 Sum_probs=141.7
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEeC
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKG 498 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~~ 498 (757)
.++.+.|-+.....+.+.+.. ....+++|+||||||||++|+++|... +..++.++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 344566666655555544332 223568999999999999999999864 445666666
Q ss_pred cccc--ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 499 PELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 499 ~~l~--~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
..++ .+|.|+.+..++.+|+.+....++||||||||.+++.++.+. ....+.+.|...+ ....+.+|+|
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~-----g~~d~~nlLkp~L----~~g~i~vIgA 321 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-----GQVDAANLIKPLL----SSGKIRVIGS 321 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC-----cHHHHHHHHHHHH----hCCCeEEEec
Confidence 6555 578899999999999999888889999999999988653221 1122333332222 3567999999
Q ss_pred CCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHH-----HHHHc-----CCCCHHHH
Q 004384 577 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRA-----LAKYT-----QGFSGADI 641 (757)
Q Consensus 577 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~-----la~~~-----~g~sg~di 641 (757)
||.++ ..|+|+.| ||+ .|+++.|+.+++..||+.+..++....++++.. .+..+ +.+-+...
T Consensus 322 Tt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKa 398 (758)
T PRK11034 322 TTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHH
Confidence 99865 57999999 997 899999999999999999887766555555432 22323 33445577
Q ss_pred HHHHHHHHHH
Q 004384 642 TEICQRACKY 651 (757)
Q Consensus 642 ~~~~~~a~~~ 651 (757)
..++.+|+..
T Consensus 399 idlldea~a~ 408 (758)
T PRK11034 399 IDVIDEAGAR 408 (758)
T ss_pred HHHHHHHHHh
Confidence 7888888754
No 93
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.7e-16 Score=173.71 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=144.8
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc--------
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 502 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 502 (757)
+|-.|++++|+++.+.+...... |-...+-++|+||||+|||++++.+|..++..|++++-..+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 56789999999999987642211 112233389999999999999999999999999998754443
Q ss_pred -ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC-------------CCCC
Q 004384 503 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-------------MSAK 568 (757)
Q Consensus 503 -~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-------------~~~~ 568 (757)
..|+|.....+-+-.+...-..| +++|||||.+. ++.. ++. . +.||..||- --+.
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG--~g~q-GDP---a----sALLElLDPEQNanFlDHYLdVp~DL 552 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLG--SGHQ-GDP---A----SALLELLDPEQNANFLDHYLDVPVDL 552 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhC--CCCC-CCh---H----HHHHHhcChhhccchhhhccccccch
Confidence 25899998888889999988888 88999999997 3222 221 1 334443332 1245
Q ss_pred CeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC-----CCCC-ccCHHHHHHHcCCCCHHHHH
Q 004384 569 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-----PVSK-DVDLRALAKYTQGFSGADIT 642 (757)
Q Consensus 569 ~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-----~~~~-~~d~~~la~~~~g~sg~di~ 642 (757)
++|++|||.|..+.|+++|+. |+. +|.++-+..++..+|.+.||-.. ++.+ .+++..-|- -+=|+
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al------~~lI~ 623 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDAL------LALIE 623 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHH------HHHHH
Confidence 789999999999999999998 998 99999999999999999998332 2221 122222221 12345
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004384 643 EICQRACKYAIRENIEK 659 (757)
Q Consensus 643 ~~~~~a~~~a~~~~~~~ 659 (757)
.-|+||+-..+++.+.+
T Consensus 624 ~YcrEaGVRnLqk~iek 640 (906)
T KOG2004|consen 624 RYCREAGVRNLQKQIEK 640 (906)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 55666666666655543
No 94
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=7.9e-16 Score=158.28 Aligned_cols=179 Identities=30% Similarity=0.536 Sum_probs=131.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCC-eEEEEcccccccCCCCC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP-SIIFIDEIDSIAPKREK 269 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p-~il~iDEid~l~~~~~~ 269 (757)
+-++|++|||||||||++|+.||...|..+-...|.++. ..-.+.-..+..+|+.+..... -+|||||.|..+..+..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk 461 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK 461 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch
Confidence 345699999999999999999999999998877776653 2233455678999999987655 46799999988766643
Q ss_pred Cc-hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC---
Q 004384 270 TH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS--- 345 (757)
Q Consensus 270 ~~-~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~--- 345 (757)
.. ++..+..++.|+- ..-.....++++.+||+|.++|.++.. |++..++||.|.+++|..+|..++.++.+.
T Consensus 462 tymSEaqRsaLNAlLf--RTGdqSrdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~ 537 (630)
T KOG0742|consen 462 TYMSEAQRSALNALLF--RTGDQSRDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPAT 537 (630)
T ss_pred hhhcHHHHHHHHHHHH--HhcccccceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCC
Confidence 32 2222333333331 111233467888899999999999987 999999999999999999998765443211
Q ss_pred ---------------------C---chhhhHHhHhcCCCchhHHHHHHHHHHH
Q 004384 346 ---------------------D---DVDLERIAKDTHGYVGADLAALCTEAAL 374 (757)
Q Consensus 346 ---------------------~---~~~l~~la~~t~g~~~~dl~~l~~~a~~ 374 (757)
. +.-+...+..|+||+|++|..|+.....
T Consensus 538 ~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQA 590 (630)
T KOG0742|consen 538 SGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQA 590 (630)
T ss_pred CCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 1 0124677889999999999998765443
No 95
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=8.7e-16 Score=162.33 Aligned_cols=177 Identities=27% Similarity=0.373 Sum_probs=135.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccch
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 235 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~ 235 (757)
+|+.++==.+.++.|.+=+....+..+.+++.|..-.+|.|||||||||||+++-|+|+.++..++.++..+...
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----- 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----- 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-----
Confidence 455555445666667655555567788999999999999999999999999999999999999988887654422
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---H----HHHHHHHHHHHHhhcccCCC--eEEEEEecCCCCC
Q 004384 236 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---E----VERRIVSQLLTLMDGLKSRA--HVIVIGATNRPNS 306 (757)
Q Consensus 236 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~----~~~~~~~~Ll~~l~~~~~~~--~v~vI~atn~~~~ 306 (757)
... ++.++-..... +||+|++||.-+.-++.... . ...-..+.|++.+|++.+.. .-++|.|||..+.
T Consensus 274 n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~Ek 350 (457)
T KOG0743|consen 274 DSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEK 350 (457)
T ss_pred cHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhh
Confidence 122 67776665443 79999999987653221111 1 11234578999999998866 5778889999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK 340 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 340 (757)
+||||.||||+|.+|+++.-+...-..+...++.
T Consensus 351 LDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 351 LDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred cCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999998887777776654
No 96
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.66 E-value=2e-15 Score=147.41 Aligned_cols=182 Identities=27% Similarity=0.441 Sum_probs=118.3
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
..+++-+++|+.|+++.++.++-++....... .+-.+++||||||+||||||+.||++++..+...+++.+.
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~--------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNLKILIRAAKKRG--------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT--------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HhcCCCCHHHccCcHHHHhhhHHHHHHHHhcC--------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 35678899999999999999877765432221 2345799999999999999999999999999988876432
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----C-----------CC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S-----------RA 293 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----~-----------~~ 293 (757)
. ...+..++.... ...||||||||.+... ..+.|+..|+... . -.
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRlnk~-----------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRLNKA-----------QQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--HH-----------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhccHH-----------HHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1 122334444433 3469999999988532 3456777776432 1 13
Q ss_pred eEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCC
Q 004384 294 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 360 (757)
Q Consensus 294 ~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 360 (757)
++.+||||++...+.+.|+. ||.....+..++.++-.+|++...+.+.+. ++.....+|.++.|-
T Consensus 149 ~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp --EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 58899999999999999988 998888999999999999998665555443 233467777777764
No 97
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3e-16 Score=157.32 Aligned_cols=173 Identities=27% Similarity=0.381 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHccccChhhHhhhC-CCCCceEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechhhhhhccc
Q 004384 165 KQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEIMSKLAG 234 (757)
Q Consensus 165 ~~~~~i~~~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLar~la~~l~---------~~~~~v~~~~l~~~~~g 234 (757)
..++++..+....+...+.-.+-+ +...+-+||+||||||||+|++++|+.+. ...+.+++..++++|.+
T Consensus 149 ~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 149 NLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 445566555544333222111111 23456699999999999999999999874 34689999999999999
Q ss_pred hhHHHHHHHHHHHHhc---C--CeEEEEcccccccCCCCCC--ch--HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 235 ESESNLRKAFEEAEKN---A--PSIIFIDEIDSIAPKREKT--HG--EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 235 ~~~~~l~~vf~~a~~~---~--p~il~iDEid~l~~~~~~~--~~--~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
++.+.+..+|+..... . -..++|||++.+...|... .+ ...-|+++.+++.+|.++...+|++++|+|-.+
T Consensus 229 ESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~ 308 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD 308 (423)
T ss_pred hhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH
Confidence 9999999999876542 1 2346799999998665221 11 123589999999999999999999999999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 306 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 306 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
.+|.++.. |-|-..++++|+...+.+|++...
T Consensus 309 siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 309 SIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 99999987 889999999999999999998654
No 98
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.66 E-value=6e-15 Score=146.24 Aligned_cols=189 Identities=25% Similarity=0.378 Sum_probs=142.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
...|++.+|++++|++|.-.+....... ...-++|||||||.||||||..+|.+++.++-..+|+-+-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 4578999999999999987766433222 2345699999999999999999999999999888888663
Q ss_pred CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCe
Q 004384 507 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 570 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~ 570 (757)
....+..++...... +|+|||||+++.+. +-+.|.-.|+.+. +...
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~--------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPA--------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChh--------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 345566677766555 69999999998531 2233334555432 1246
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHH
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a 648 (757)
+.+||||.+.-.|...|.. ||.....+..++.++..+|++...+.+.+.-+.+ ..++|+.+.| +++=-..+++..
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 8899999999999999887 9999999999999999999999998877664433 5677877776 544444444443
No 99
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.7e-14 Score=164.76 Aligned_cols=159 Identities=25% Similarity=0.354 Sum_probs=106.2
Q ss_pred ccc-cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEEEech
Q 004384 158 DDV-GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGP 226 (757)
Q Consensus 158 ~~i-~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~----------~~~~~v~~~ 226 (757)
+.+ |+.++.++.+.+++.. ...++-+|+|.||+|||.++.-+++.+- ..++.++-.
T Consensus 186 dPvigr~deeirRvi~iL~R-------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSR-------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCccCCchHHHHHHHHHHhc-------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 444 4447877777777654 2235789999999999999999988752 234444433
Q ss_pred hh--hhhccchhHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 227 EI--MSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 227 ~l--~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
.+ -.++.|+.+.+++.+...+. .....|||+||++-+........ . ....+++.....++.+.+||+|..
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~------~d~~nlLkp~L~rg~l~~IGatT~ 325 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-A------IDAANLLKPLLARGGLWCIGATTL 325 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-H------HHHHHhhHHHHhcCCeEEEecccH
Confidence 22 24667889999999999888 44567899999999987654311 1 112222333234455899998763
Q ss_pred CC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 304 PN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 304 ~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
.. .-+|++.+ ||. .+.++.|+......||....
T Consensus 326 e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 326 ETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred HHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhh
Confidence 22 34889988 784 46788898877666665443
No 100
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.63 E-value=7.6e-15 Score=152.51 Aligned_cols=176 Identities=26% Similarity=0.449 Sum_probs=124.5
Q ss_pred CCccccccchhhHHH---HhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
.-++++++|++++.. -|..++.. ....+++|||||||||||+|+++|+..+..|..+++-.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--- 83 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--- 83 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc---
Confidence 456788888887642 22222221 22346999999999999999999999999999998642
Q ss_pred cccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC--
Q 004384 504 MWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 577 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT-- 577 (757)
.+-+.++.+|+.|++.. ..|||+|||+++-.. -...||-.|+ ++.+++||||
T Consensus 84 ----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~--------------QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 ----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA--------------QQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred ----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh--------------hhhhhhhhhc----CCeEEEEeccCC
Confidence 35688999999996543 379999999998431 2345666654 4578888887
Q ss_pred CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhc--cCCCC------CccCHHHHHHHcCCCCHHHHHHHHHH
Q 004384 578 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLR--KSPVS------KDVDLRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 578 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~--~~~~~------~~~d~~~la~~~~g~sg~di~~~~~~ 647 (757)
|..-.+.+|+++ |.- ++.+.+.+.++..++++..+. +.++. .+.-+..++..++| |.+.+++.
T Consensus 142 NPsF~ln~ALlS--R~~-vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 142 NPSFELNPALLS--RAR-VFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred CCCeeecHHHhh--hhh-eeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 667799999998 775 788889999999999988442 23333 11224555655554 66655543
No 101
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.2e-15 Score=162.38 Aligned_cols=164 Identities=28% Similarity=0.391 Sum_probs=128.7
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc--------
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 502 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 502 (757)
.|-.|++++|+++.+.+....... -....=+||+||||+|||+|++.+|..++..|++++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 356799999999998875321111 01112289999999999999999999999999999865443
Q ss_pred -ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC-------------CCCC
Q 004384 503 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-------------MSAK 568 (757)
Q Consensus 503 -~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-------------~~~~ 568 (757)
..|+|.-...+-+-+.+|....| ++++||||.+...-. ++.. +.||.-||- -.+.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r---GDPa-------SALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR---GDPA-------SALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC---CChH-------HHHHhhcCHhhcCchhhccccCccch
Confidence 25899999899999999999998 999999999975321 2221 334444431 1245
Q ss_pred CeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 004384 569 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 569 ~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 615 (757)
++|++|+|.|..+.|+.+|+. |+. +|.++-++.++..+|.+.||
T Consensus 465 S~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 789999999999999999998 998 99999999999999999998
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=8.8e-15 Score=159.71 Aligned_cols=223 Identities=22% Similarity=0.286 Sum_probs=146.4
Q ss_pred cccchhhHHHHhhhhccCCCCChhh-hhh-ccc-CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-ccccC
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEK-FEK-FGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 507 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~-~~~-~~~-~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g 507 (757)
.++|++.+++.+...+..+++.... ... -.. .+..++||+||||||||++|+++|..++.+|+.++++.+. ..|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 3889999999987665322111100 000 011 1346799999999999999999999999999999998875 46888
Q ss_pred chhHH-HHHHHHHH----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeE
Q 004384 508 ESEAN-VREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 571 (757)
Q Consensus 508 ~~e~~-i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v 571 (757)
+.... +..+++.+ ....++|+||||||.+..++.+.....+.....+++.||+.||+-. .....
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 76443 45555432 2346789999999999876433222222334578899999998631 11245
Q ss_pred EEEeeCCCCC----------------------------------------------------CCCccccCCCccceEEEe
Q 004384 572 FIIGATNRPD----------------------------------------------------IIDPALLRPGRLDQLIYI 599 (757)
Q Consensus 572 ~vi~tTn~~~----------------------------------------------------~ld~allrpgRf~~~i~~ 599 (757)
++|.|+|-.. -+.|+|+ ||+|.+++|
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f 309 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATL 309 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeec
Confidence 6777766511 0234444 699999999
Q ss_pred cCCCHHHHHHHHHH----hhc-------cCCCCCccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 600 PLPDEDSRHQIFKA----CLR-------KSPVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 600 ~~p~~~~r~~Il~~----~l~-------~~~~~~~~d---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
.+.+.++..+|+.. .++ ..++.-.++ +..|++. ..++-.+.|+.+++......+.+.
T Consensus 310 ~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 310 EELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 99999999999973 332 222332222 4556654 345566778887777766666543
No 103
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.61 E-value=1.4e-14 Score=170.40 Aligned_cols=252 Identities=20% Similarity=0.304 Sum_probs=166.1
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc--------
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------- 502 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------- 502 (757)
.+..|++++|+.+.+.+...... +-.....++|+||||||||++++.+|+.++.+|+.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35789999999998776532111 111233599999999999999999999999999888765432
Q ss_pred -ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-------------CCC
Q 004384 503 -TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------------SAK 568 (757)
Q Consensus 503 -~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-------------~~~ 568 (757)
..|+|.....+...+..+....| |+||||||.+...... ...+.|+..||.- .+.
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dl 463 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDL 463 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccC
Confidence 24777777777777777665555 8999999998653211 1245666666631 134
Q ss_pred CeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc-----CCCC---CccC---HHHHHH-HcCCC
Q 004384 569 KTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-----SPVS---KDVD---LRALAK-YTQGF 636 (757)
Q Consensus 569 ~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-----~~~~---~~~d---~~~la~-~~~g~ 636 (757)
+++++|+|+|.. .|+++|+. ||+ +|.|+.++.++..+|.+.++.. .++. -.++ +..+++ .+..+
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~ 539 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREA 539 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCccc
Confidence 789999999987 49999998 996 8999999999999999999841 1111 1122 333432 23334
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Q 004384 637 SGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQT 716 (757)
Q Consensus 637 sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~ 716 (757)
-.+.++..++..+..++.+.+... ......|+.+++.+.+..-+ ...+.. .
T Consensus 540 GaR~LeR~I~~i~r~~l~~~~~~~-------------------~~~~v~v~~~~~~~~lg~~~--~~~~~~--------~ 590 (784)
T PRK10787 540 GVRSLEREISKLCRKAVKQLLLDK-------------------SLKHIEINGDNLHDYLGVQR--FDYGRA--------D 590 (784)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcC-------------------CCceeeecHHHHHHHhCCCc--cccchh--------h
Confidence 456777666665555554432110 01124678888888775432 211111 1
Q ss_pred HhhccCCCcccccccCC
Q 004384 717 LQQSRGIGSEFRFAEAG 733 (757)
Q Consensus 717 ~~~~~~~~~~~~~~~~~ 733 (757)
-...-|+++++.++.+|
T Consensus 591 ~~~~~G~~~gla~t~~g 607 (784)
T PRK10787 591 NENRVGQVTGLAWTEVG 607 (784)
T ss_pred cCCCceEEEEeEEeCCC
Confidence 23567888899888776
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.9e-14 Score=159.95 Aligned_cols=186 Identities=20% Similarity=0.283 Sum_probs=136.3
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++++++.|...+... +.+..+||+||+|||||++++++|+.+++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sC 79 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRAC 79 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHH
Confidence 357999999999999998876531 23445899999999999999999998754
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.++..+ ......++.+.+.+.. ....|+||||+|.|. ....|.|
T Consensus 80 r~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NAL 139 (830)
T PRK07003 80 REIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAM 139 (830)
T ss_pred HHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHH
Confidence 133333221 1123346666666543 335799999999973 3457889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 637 (757)
|+.|+.. ..++.+|++||.++.|.+.+++ |+ ..+.|..++.++..+.|+..+++.++.- +..+..|++.++| +
T Consensus 140 LKtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-s 213 (830)
T PRK07003 140 LKTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-S 213 (830)
T ss_pred HHHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988864 3467888888889999889887 88 4899999999999999999887766542 2336677778776 6
Q ss_pred HHHHHHHHHHHHH
Q 004384 638 GADITEICQRACK 650 (757)
Q Consensus 638 g~di~~~~~~a~~ 650 (757)
.++..+++..+..
T Consensus 214 mRdALsLLdQAia 226 (830)
T PRK07003 214 MRDALSLTDQAIA 226 (830)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777666553
No 105
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.7e-14 Score=160.96 Aligned_cols=186 Identities=23% Similarity=0.333 Sum_probs=136.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++++++.|.+.+... +.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG 79 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCG 79 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCc
Confidence 357999999999999998886532 23455899999999999999999998765
Q ss_pred --------------ceEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHH
Q 004384 492 --------------NFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADR 553 (757)
Q Consensus 492 --------------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 553 (757)
.++.+++.+ ...-..++++.+.+. .....|+||||+|.|. ..
T Consensus 80 ~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~ 139 (700)
T PRK12323 80 QCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NH 139 (700)
T ss_pred ccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HH
Confidence 223333221 112344666666543 3345799999999973 34
Q ss_pred HHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHH
Q 004384 554 VLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY 632 (757)
Q Consensus 554 ~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~ 632 (757)
..|.||+.|+.- ..++++|++||.++.|.+.+++ |+ ..+.|..++.++..+.++..+.+.++..+.+ +..+++.
T Consensus 140 AaNALLKTLEEP--P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccC--CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 678999998863 4567888888889999999987 88 4899999999999999988887665543322 5667777
Q ss_pred cCCCCHHHHHHHHHHHHH
Q 004384 633 TQGFSGADITEICQRACK 650 (757)
Q Consensus 633 ~~g~sg~di~~~~~~a~~ 650 (757)
++| +.++..+++..+..
T Consensus 215 A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 215 AQG-SMRDALSLTDQAIA 231 (700)
T ss_pred cCC-CHHHHHHHHHHHHH
Confidence 775 77787777766543
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=2.4e-14 Score=170.21 Aligned_cols=197 Identities=20% Similarity=0.315 Sum_probs=138.9
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
-.+++++|.++....+.+.+.. ....+++|+||||||||++|+.+|..+ +..++.++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~ 250 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLD 250 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEee
Confidence 4577888888765555443322 223568999999999999999999875 24567777
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHh-CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
...+. .+|.|+.+..++.+|+.+.. ..++|||||||+.+.+.++... . ..+-+.|+-.| .++.+.+|
T Consensus 251 l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~-~-----~d~~n~Lkp~l----~~G~l~~I 320 (852)
T TIGR03345 251 LGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG-Q-----GDAANLLKPAL----ARGELRTI 320 (852)
T ss_pred hhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc-c-----ccHHHHhhHHh----hCCCeEEE
Confidence 76665 36899999999999999865 4579999999999988654321 1 11223333333 35678999
Q ss_pred eeCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-----CccCHHHHHHHcCCCC-----HH
Q 004384 575 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-----KDVDLRALAKYTQGFS-----GA 639 (757)
Q Consensus 575 ~tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-----~~~d~~~la~~~~g~s-----g~ 639 (757)
|||+..+ .+|+||.| ||. .|.+++|+.+++..||+.+.+.+... .+..+..++..+.+|- +.
T Consensus 321 gaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPD 397 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPD 397 (852)
T ss_pred EecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCcc
Confidence 9998743 58999999 996 89999999999999987666543321 2334667777777663 22
Q ss_pred HHHHHHHHHHH
Q 004384 640 DITEICQRACK 650 (757)
Q Consensus 640 di~~~~~~a~~ 650 (757)
---.++.+|+.
T Consensus 398 KAIdlldea~a 408 (852)
T TIGR03345 398 KAVSLLDTACA 408 (852)
T ss_pred HHHHHHHHHHH
Confidence 33345555543
No 107
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.58 E-value=3.1e-14 Score=154.31 Aligned_cols=223 Identities=21% Similarity=0.297 Sum_probs=146.2
Q ss_pred cccchhhHHHHhhhhccCCCCChhh----hhhcccC-CCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-ccc
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEK----FEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMW 505 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~----~~~~~~~-~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~ 505 (757)
.++|++++++.+...+....+.... ....++. ...++||+||||||||++|+++|..++.+|..+++..+. ..|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4789999999987765321111100 0000111 135699999999999999999999999999999888765 368
Q ss_pred cCch-hHHHHHHHHHH----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCC
Q 004384 506 FGES-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK 569 (757)
Q Consensus 506 ~g~~-e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~ 569 (757)
+|+. +..+..+++.+ ....++|+||||||.+.+++.......+-....+.+.||+.|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 8875 34455555432 2345789999999999886543322222234578899999998742 123
Q ss_pred eEEEEeeCCCCC--------------------------------------------------CCCccccCCCccceEEEe
Q 004384 570 TVFIIGATNRPD--------------------------------------------------IIDPALLRPGRLDQLIYI 599 (757)
Q Consensus 570 ~v~vi~tTn~~~--------------------------------------------------~ld~allrpgRf~~~i~~ 599 (757)
+.++|.|+|-.. -+.|+|+ ||+|.+++|
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl--gRld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI--GRLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh--CCCCeEeec
Confidence 578888888610 0224555 599999999
Q ss_pred cCCCHHHHHHHHHHh----hcc-------CCCCCccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 600 PLPDEDSRHQIFKAC----LRK-------SPVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 600 ~~p~~~~r~~Il~~~----l~~-------~~~~~~~d---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
.+.+.++..+|+... +++ .++...++ ++.+|+. ...+-.+-|+.+++...+.++.+.
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~ 388 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDL 388 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhC
Confidence 999999999998763 221 12222222 4556654 345566777777777666655543
No 108
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.58 E-value=2.6e-14 Score=162.32 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=143.7
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
..+|+++.|.+...+.+...+.. ..+.+++|+||||||||++|++++..+ +.+|+.+
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~i 127 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEI 127 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEE
Confidence 36789999999998888755321 123569999999999999999998653 3578988
Q ss_pred eCccc-------cccccCchhHH----------------HHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHH
Q 004384 497 KGPEL-------LTMWFGESEAN----------------VREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 553 (757)
Q Consensus 497 ~~~~l-------~~~~~g~~e~~----------------i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 553 (757)
++... ....+|..... -...+..| ...++|||||+.+. ..
T Consensus 128 d~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~--------------~~ 190 (531)
T TIGR02902 128 DATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELH--------------PV 190 (531)
T ss_pred ccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCC--------------HH
Confidence 87531 11111110000 00112222 23699999999974 33
Q ss_pred HHHHHHHhhcCC---------------------------CCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHH
Q 004384 554 VLNQLLTEMDGM---------------------------SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDS 606 (757)
Q Consensus 554 ~~~~ll~~ld~~---------------------------~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~ 606 (757)
..+.||..|+.- ...+-.+|++|||.|+.|+|++.+ |+. .|+|++++.++
T Consensus 191 ~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~ee 267 (531)
T TIGR02902 191 QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEE 267 (531)
T ss_pred HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHH
Confidence 455666555321 011235666777889999999998 886 78899999999
Q ss_pred HHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccc
Q 004384 607 RHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSE 685 (757)
Q Consensus 607 r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (757)
+.+|++..+++..+.-+ .-++.++.++ ++++++.++++.|+..|..+. ...
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~--------------------------~~~ 319 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG--------------------------RKR 319 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC--------------------------CcE
Confidence 99999999988764422 2245555554 489999999999988776542 136
Q ss_pred ccHHHHHHHHhh
Q 004384 686 IKAAHFEESMKF 697 (757)
Q Consensus 686 i~~~~~~~a~~~ 697 (757)
|+.+|++.++..
T Consensus 320 It~~dI~~vl~~ 331 (531)
T TIGR02902 320 ILAEDIEWVAEN 331 (531)
T ss_pred EcHHHHHHHhCC
Confidence 999999999864
No 109
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.58 E-value=3e-14 Score=169.44 Aligned_cols=199 Identities=22% Similarity=0.277 Sum_probs=138.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh--------
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 229 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~-------- 229 (757)
+++.|+++.++.|.+++....... -..+..++|+||||||||++++++|+.++.+++.++.....
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~ 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGH 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCC
Confidence 358899999999998876543221 12345799999999999999999999999999888754321
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc-----c--------CCCeE
Q 004384 230 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 295 (757)
Q Consensus 230 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~-----~--------~~~~v 295 (757)
..|.|.....+...|..+....| ++||||||.+.+..... ..+.|+..++.. . ...++
T Consensus 393 ~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~-------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 393 RRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD-------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC-------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 24566666677778887766666 89999999998643221 124455555421 1 11468
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh-----cCCCC------CCchhhhHHhH-hcCCCchh
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT-----KNMKL------SDDVDLERIAK-DTHGYVGA 363 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-----~~~~l------~~~~~l~~la~-~t~g~~~~ 363 (757)
++|+|||.++.+++++++ || ..++++.|+.+++.+|++.++ +...+ ..+..+..+++ .+..+..+
T Consensus 465 ~~I~TtN~~~~i~~~L~~--R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R 541 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLD--RM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVR 541 (775)
T ss_pred EEEEecCCchhCCHHHhC--Ce-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCCh
Confidence 899999999999999998 88 478999999999999998664 11111 12223555554 34445556
Q ss_pred HHHHHHHHHHH
Q 004384 364 DLAALCTEAAL 374 (757)
Q Consensus 364 dl~~l~~~a~~ 374 (757)
++...+.....
T Consensus 542 ~l~r~i~~~~~ 552 (775)
T TIGR00763 542 NLERQIEKICR 552 (775)
T ss_pred HHHHHHHHHHH
Confidence 66665554443
No 110
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.57 E-value=5e-14 Score=139.81 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=140.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
.+++-.|++..|.++.++++.-++.-...+. ....++||+||||.||||||+.+|++++..+...+|+.+-.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~--------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG--------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC--------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 4567789999999999999988887644333 34568999999999999999999999999998888876522
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCe
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 294 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~----------------~~~~ 294 (757)
...+-.++.... ..+||||||||.+.+. +-+.|...|+.+. .-++
T Consensus 91 ------~gDlaaiLt~Le--~~DVLFIDEIHrl~~~-----------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 91 ------PGDLAAILTNLE--EGDVLFIDEIHRLSPA-----------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ------hhhHHHHHhcCC--cCCeEEEehhhhcChh-----------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 233444444433 3379999999999754 2244555555432 1146
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 295 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 295 v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
+.+||+|.+...+...|+. ||.....+..++.++..+|++...+.+.+. ++.....+|+++.|- ++-...++++
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGT-PRIAnRLLrR 226 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGT-PRIANRLLRR 226 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCC-cHHHHHHHHH
Confidence 8999999999999999988 999999999999999999998776655543 233466777777764 3333344443
No 111
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.57 E-value=1.7e-14 Score=172.09 Aligned_cols=167 Identities=20% Similarity=0.351 Sum_probs=126.5
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
-.++.++|.++....+.+.+.. ....+++|+||||||||++|+++|..+ +.+++.++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~ 241 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 241 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEe
Confidence 3566788888765555544332 233569999999999999999999987 67888888
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHh-CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
...+. .+|.|+.++.++.+|+.... ..++|+||||++.+.+.++.. +. ....+.|...| .++.+.+|
T Consensus 242 l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~-----~~-~d~~~~lkp~l----~~g~l~~I 311 (857)
T PRK10865 242 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD-----GA-MDAGNMLKPAL----ARGELHCV 311 (857)
T ss_pred hhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc-----cc-hhHHHHhcchh----hcCCCeEE
Confidence 77766 56899999999999998644 568999999999998765322 11 12223333332 45688999
Q ss_pred eeCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC
Q 004384 575 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 620 (757)
Q Consensus 575 ~tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 620 (757)
|||+..+ .+|+|+.| ||+ .|+++.|+.+++..|++....+...
T Consensus 312 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 9999877 48999999 998 6889999999999999987765443
No 112
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.57 E-value=3.5e-14 Score=151.33 Aligned_cols=176 Identities=27% Similarity=0.413 Sum_probs=130.1
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhc-ccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-ccccC-c
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG-E 508 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g-~ 508 (757)
.+.|++++|+.+..++...+........+ .-.+++++||+||||||||++|+++|..++.+|+.+++..+. ..|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 47899999999877665332221110000 112457899999999999999999999999999999999887 47888 5
Q ss_pred hhHHHHHHHHHHH-------------------------------------------------------------------
Q 004384 509 SEANVREIFDKAR------------------------------------------------------------------- 521 (757)
Q Consensus 509 ~e~~i~~lf~~a~------------------------------------------------------------------- 521 (757)
.+..++.+|..|.
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 7777787777660
Q ss_pred ------------------------------------------------------------------------hCCCeEEE
Q 004384 522 ------------------------------------------------------------------------QSAPCVLF 529 (757)
Q Consensus 522 ------------------------------------------------------------------------~~~p~il~ 529 (757)
...-.|+|
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 01235999
Q ss_pred EecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCeEEEEeeCC----CCCCCCccccCCCccceEE
Q 004384 530 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLI 597 (757)
Q Consensus 530 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~tTn----~~~~ld~allrpgRf~~~i 597 (757)
|||||.++.+.++.. .+-...-+...||..|+|-. +.+++++|++.. .|+.|=|.|. |||..++
T Consensus 253 iDEiDKIa~~~~~~~--~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGESSG--ADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQ--GRFPIRV 328 (441)
T ss_pred EEchhhhcccCCCCC--CCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEE
Confidence 999999997653322 22334568899999999832 345788888764 4666667776 7999999
Q ss_pred EecCCCHHHHHHHH
Q 004384 598 YIPLPDEDSRHQIF 611 (757)
Q Consensus 598 ~~~~p~~~~r~~Il 611 (757)
.+.+++.++..+||
T Consensus 329 ~L~~L~~edL~rIL 342 (441)
T TIGR00390 329 ELQALTTDDFERIL 342 (441)
T ss_pred ECCCCCHHHHHHHh
Confidence 99999999999988
No 113
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.55 E-value=5.2e-14 Score=152.98 Aligned_cols=187 Identities=22% Similarity=0.351 Sum_probs=129.7
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc----------------
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---------------- 492 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~---------------- 492 (757)
.|++|+|++.+++.|++.+..+..+. ..++...+.++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~---~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADV---AAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccc---cccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 58999999999999999987654322 22334456779999999999999999999876432
Q ss_pred -------eEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHh
Q 004384 493 -------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 561 (757)
Q Consensus 493 -------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 561 (757)
+..+.... .. -.-..+|.+++.+... ...|+||||+|.+. ....|.||..
T Consensus 80 ~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------------~~aanaLLk~ 140 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------------ERAANALLKA 140 (394)
T ss_pred hcCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------------HHHHHHHHHH
Confidence 11111110 01 1234578888877643 34699999999983 2345888998
Q ss_pred hcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHH
Q 004384 562 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI 641 (757)
Q Consensus 562 ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di 641 (757)
|+... ...++|++|+| ++.+.|++++ |+ ..++|++|+.++..+++... .++. ......++..+.|..+..+
T Consensus 141 LEep~-~~~~fIL~a~~-~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~---~~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 141 VEEPP-PRTVWLLCAPS-PEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR---DGVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hhcCC-CCCeEEEEECC-hHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh---cCCC-HHHHHHHHHHcCCCHHHHH
Confidence 88643 23445555555 8999999987 88 59999999999888777632 2333 2345678888898877666
Q ss_pred HHHHH
Q 004384 642 TEICQ 646 (757)
Q Consensus 642 ~~~~~ 646 (757)
.-+..
T Consensus 212 ~l~~~ 216 (394)
T PRK07940 212 RLATD 216 (394)
T ss_pred HHhcC
Confidence 55443
No 114
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.55 E-value=3.7e-14 Score=151.20 Aligned_cols=176 Identities=25% Similarity=0.409 Sum_probs=130.2
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhccc-CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc-cccC-c
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFG-E 508 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~-~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g-~ 508 (757)
.+.|++++|+.+..++...+........... ..+.++||+||||||||++|+++|..++.+|+.++++++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 4889999999998776432111100001000 12478999999999999999999999999999999998885 6999 5
Q ss_pred hhHHHHHHHHHHH-------------------------------------------------------------------
Q 004384 509 SEANVREIFDKAR------------------------------------------------------------------- 521 (757)
Q Consensus 509 ~e~~i~~lf~~a~------------------------------------------------------------------- 521 (757)
.+..++.+|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 5677777777771
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 004384 522 ---Q--------------------------------------------------------------------SAPCVLFF 530 (757)
Q Consensus 522 ---~--------------------------------------------------------------------~~p~il~i 530 (757)
. ..-.|+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCeEEEEeeCC----CCCCCCccccCCCccceEEE
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATN----RPDIIDPALLRPGRLDQLIY 598 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~tTn----~~~~ld~allrpgRf~~~i~ 598 (757)
||||.++.+.+++ ..+-....+...||..|+|-. +.+++++||+-. .|+.|-|.|. |||..++.
T Consensus 256 DEiDKIa~~~~~~--~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~--GR~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGSS--GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQ--GRFPIRVE 331 (443)
T ss_pred EcchhhcccCCCC--CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHh--CccceEEE
Confidence 9999999875432 223344568899999999832 346788888753 4667778887 69999999
Q ss_pred ecCCCHHHHHHHH
Q 004384 599 IPLPDEDSRHQIF 611 (757)
Q Consensus 599 ~~~p~~~~r~~Il 611 (757)
+.+++.++..+||
T Consensus 332 L~~L~~~dL~~IL 344 (443)
T PRK05201 332 LDALTEEDFVRIL 344 (443)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999998
No 115
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.54 E-value=2.9e-13 Score=145.73 Aligned_cols=192 Identities=24% Similarity=0.381 Sum_probs=134.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
.+.+..|+++.|.++.++.+..++...... -.++.+++|+||||||||++|+++|.+++..+..++++.+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~--------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR--------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc-
Confidence 456678999999999999998887542111 13456899999999999999999999999887777665331
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCe
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 294 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~----------------~~~~ 294 (757)
....+..++... ..+++|||||+|.+... .+ +.+...++... .-..
T Consensus 89 -----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-------~~----e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 89 -----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-------VE----EILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred -----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-------HH----HHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 112333444432 34679999999988532 11 12333333211 1134
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHH
Q 004384 295 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 372 (757)
Q Consensus 295 v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 372 (757)
+.+|++|+++..+++.+++ ||...+.++.|+.+++.++++.......+. ++..+..++..+.|+. +.+..++..+
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHH
Confidence 7889999999999999987 888889999999999999998776554332 3334788888888865 4455555543
No 116
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=3.4e-13 Score=150.07 Aligned_cols=182 Identities=19% Similarity=0.300 Sum_probs=128.3
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++++++.|...+... ..+.++||+|||||||||+|+++|..++.
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c 77 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRAC 77 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHH
Confidence 457999999999999888765532 23456899999999999999999998754
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.++++. ...-..++.+.+.+... ...|+|+||+|.+. ...++.|
T Consensus 78 ~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a~~~L 137 (472)
T PRK14962 78 RSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEAFNAL 137 (472)
T ss_pred HHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHHHHHH
Confidence 344444432 11234566666655432 34699999999973 2346778
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 637 (757)
|..|+... ..+++|++|+.|+.+++++.+ |+. .+.|.+|+.++...+++..++..++.- +..+..|++.+.| +
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-d 211 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-G 211 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-C
Confidence 88887643 356666677778899999988 885 899999999999999999887655432 2235667766653 4
Q ss_pred HHHHHHHHH
Q 004384 638 GADITEICQ 646 (757)
Q Consensus 638 g~di~~~~~ 646 (757)
.+++.+.+.
T Consensus 212 lR~aln~Le 220 (472)
T PRK14962 212 LRDALTMLE 220 (472)
T ss_pred HHHHHHHHH
Confidence 444444444
No 117
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.2e-13 Score=150.95 Aligned_cols=184 Identities=20% Similarity=0.266 Sum_probs=131.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+...|...+... ..+..+||+||+|||||++|+++|..+++.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC 81 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSC 81 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHH
Confidence 357999999999999888776531 223458999999999999999999987642
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.+++.. ......++.+.+.+. .....|+||||+|.+. ....+.|
T Consensus 82 ~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NAL 141 (484)
T PRK14956 82 LEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNAL 141 (484)
T ss_pred HHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHH
Confidence 23333211 111234555555443 3345799999999973 4567888
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 637 (757)
|..|+. ....+++|++|+.++.|.+++++ |+. .++|.+++.++..+.++..+.+.++.- +..+..+|+.++| +
T Consensus 142 LKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d 215 (484)
T PRK14956 142 LKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-S 215 (484)
T ss_pred HHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-h
Confidence 999876 34578888888889999999998 885 788999999888898988887765542 2235666666665 5
Q ss_pred HHHHHHHHHHH
Q 004384 638 GADITEICQRA 648 (757)
Q Consensus 638 g~di~~~~~~a 648 (757)
.++.-+++..+
T Consensus 216 ~RdAL~lLeq~ 226 (484)
T PRK14956 216 VRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 118
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.53 E-value=1.1e-13 Score=153.49 Aligned_cols=172 Identities=20% Similarity=0.320 Sum_probs=117.4
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhH-HHHHHHHHHHhCCCeEEEEecccchhcc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~-~i~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
..++||||+|+|||+|+++++.++ +..++.+++.++...+...... .+....+..+ .+.+|+|||++.+.++
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~ 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC
Confidence 458999999999999999999876 4678888888776554332211 1222222222 2469999999998643
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHh
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 614 (757)
. .....|+..++.+...++.+||++++.|+. +++.+.+ ||. ..+.+++||.++|..|++..
T Consensus 215 ~------------~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 215 E------------RTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred H------------HHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1 122344444444333344567766666665 4577776 997 47999999999999999999
Q ss_pred hccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 615 LRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 615 l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
++..++.-+ .-++.+|+...+ +.+++..++......|..
T Consensus 281 ~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 281 AEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 987655432 236677777654 788888888877665543
No 119
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.53 E-value=8.7e-14 Score=156.11 Aligned_cols=173 Identities=20% Similarity=0.302 Sum_probs=118.2
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhccc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 540 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r 540 (757)
..++||||||+|||+|+++++.++ +..++.+++.++.+.+..........-|..... .+.+|+|||++.+.+++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCH
Confidence 459999999999999999999986 456788888887665543322212222332222 45799999999986431
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhh
Q 004384 541 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l 615 (757)
.....|+..++.+...++.+||+++..|.. +++++.+ ||. ..+.+++||.++|.+|++..+
T Consensus 228 ------------~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~ 293 (450)
T PRK00149 228 ------------RTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKA 293 (450)
T ss_pred ------------HHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHH
Confidence 123445554544433444567766666665 6678776 996 589999999999999999999
Q ss_pred ccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 616 RKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 616 ~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
+..++.-+ .-++.+|+...| +.+++..++......|..
T Consensus 294 ~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~ 332 (450)
T PRK00149 294 EEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASL 332 (450)
T ss_pred HHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHh
Confidence 86554322 226667766654 778888888776655543
No 120
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.53 E-value=3.4e-13 Score=144.06 Aligned_cols=188 Identities=23% Similarity=0.347 Sum_probs=129.5
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccch
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGE 235 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~ 235 (757)
+|+++.|.++.+++++.++......+ ..+.+++|+||||||||+|++++|.+++..+..+.+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~----- 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK----- 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC-----
Confidence 57899999999999988876422111 23567999999999999999999999988776665443211
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCeEEEEE
Q 004384 236 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAHVIVIG 299 (757)
Q Consensus 236 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~----------------~~~~v~vI~ 299 (757)
...+...+... ..+.++||||++.+.+.. .+.|+..++... ....+.+|+
T Consensus 69 -~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~-----------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 -PGDLAAILTNL--EEGDVLFIDEIHRLSPAV-----------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -chhHHHHHHhc--ccCCEEEEehHhhhCHHH-----------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11222223222 345799999999886421 122343433221 113478889
Q ss_pred ecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHH
Q 004384 300 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 373 (757)
Q Consensus 300 atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 373 (757)
+|+++..+++++++ ||...+.+..|+.++..++++.......+. ++..+..+++.+.|+. +.+..++..+.
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 99999999999987 888888999999999999998766543322 3345788899888875 44455555443
No 121
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.53 E-value=2.8e-13 Score=148.60 Aligned_cols=202 Identities=23% Similarity=0.301 Sum_probs=128.1
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC---------CceEEEeCccc
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPEL 501 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~---------~~~i~v~~~~l 501 (757)
+++.|-++..+.|...+..... + ..+.+++|+||||||||+++++++..+. ..++.+++...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 3577777777777666542111 1 2235699999999999999999997652 46788887654
Q ss_pred ccc----------cc--Cc--------hhHHHHHHHHHHH-hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHH
Q 004384 502 LTM----------WF--GE--------SEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 560 (757)
Q Consensus 502 ~~~----------~~--g~--------~e~~i~~lf~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 560 (757)
.+. .. |. .......+++... ...+.|++|||+|.+... .+.++.+|+.
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~l~~ 154 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQLSR 154 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHhHhc
Confidence 321 10 11 1223345555443 345689999999999721 1234555554
Q ss_pred hhcC-CCCCCeEEEEeeCCCCC---CCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhccCC---CCCccCHHHHHH-
Q 004384 561 EMDG-MSAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRKSP---VSKDVDLRALAK- 631 (757)
Q Consensus 561 ~ld~-~~~~~~v~vi~tTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~l~~~~---~~~~~d~~~la~- 631 (757)
..+. .....++.+|+++|.++ .+++.+.+ ||. ..++|++++.++..+|++..++... .-.+.-++.++.
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHH
Confidence 4221 11235788999999886 57778776 775 6899999999999999999886311 111111233333
Q ss_pred --HcCCCCHHHHHHHHHHHHHHHHHH
Q 004384 632 --YTQGFSGADITEICQRACKYAIRE 655 (757)
Q Consensus 632 --~~~g~sg~di~~~~~~a~~~a~~~ 655 (757)
.+.| ..+.+.++|+.|+..|..+
T Consensus 233 ~~~~~G-d~R~al~~l~~a~~~a~~~ 257 (365)
T TIGR02928 233 AAQEHG-DARKAIDLLRVAGEIAERE 257 (365)
T ss_pred HHHhcC-CHHHHHHHHHHHHHHHHHc
Confidence 3334 4456667888888877654
No 122
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.52 E-value=3.5e-13 Score=149.45 Aligned_cols=180 Identities=27% Similarity=0.453 Sum_probs=125.3
Q ss_pred CccccccchhhHHHH---hhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 428 VSWEDIGGLENVKRE---LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~---l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
-++++++|++++... |...+.. ....+++|+||||||||++|+++|...+..|+.+++...
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--- 72 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--- 72 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc---
Confidence 457888899887554 6665532 122469999999999999999999999999999887532
Q ss_pred ccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC--C
Q 004384 505 WFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--N 578 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT--n 578 (757)
....++.+++.+. .....++||||+|.+.. ...+.|+..|+. ..+++|++| |
T Consensus 73 ----~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~att~n 130 (413)
T PRK13342 73 ----GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGATTEN 130 (413)
T ss_pred ----cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEeCCCC
Confidence 2345666776664 22457999999998732 234566666653 346666655 3
Q ss_pred CCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC--CC-C-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 579 RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--PV-S-KDVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 579 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--~~-~-~~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
....+++++++ |+ ..+.|++++.++...+++..+... ++ . .+..+..+++.+.| +.+.+.+++..+.
T Consensus 131 ~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 131 PSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred hhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 45588999998 88 689999999999999999887542 11 1 11225566666643 5566666666554
No 123
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=8.7e-14 Score=166.88 Aligned_cols=183 Identities=21% Similarity=0.353 Sum_probs=133.7
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
-.++.++|.++....+.+.+.. ....+++|+||||||||++++++|... +.+++.++
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~ 236 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALD 236 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEee
Confidence 3566778888765555544322 234568999999999999999999875 56778887
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHhC-CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
...+. .+|.|+.++.++.+|+.+... .++|||||||+.+.+.++.. +. ..+.+.|... .....+.+|
T Consensus 237 ~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~-----~~-~d~~~~Lk~~----l~~g~i~~I 306 (852)
T TIGR03346 237 MGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAE-----GA-MDAGNMLKPA----LARGELHCI 306 (852)
T ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCc-----ch-hHHHHHhchh----hhcCceEEE
Confidence 77765 578999999999999998654 58999999999998754321 11 2233333322 245678999
Q ss_pred eeCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-----CHHHHHHHcCCC
Q 004384 575 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-----DLRALAKYTQGF 636 (757)
Q Consensus 575 ~tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-----d~~~la~~~~g~ 636 (757)
|+||..+ .+|+|+.| ||. .|+++.|+.+++..|++.+..++.....+ .+...+..+.+|
T Consensus 307 gaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 9999864 57999999 997 68999999999999999887776544333 345555555554
No 124
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=3.2e-13 Score=151.35 Aligned_cols=186 Identities=21% Similarity=0.298 Sum_probs=134.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC 78 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATC 78 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHH
Confidence 357999999999999998876521 23456899999999999999999998754
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.+++++- ..-..+|.+...+.. ....|++|||+|.|- ....+.|
T Consensus 79 ~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------------~~A~NAL 138 (702)
T PRK14960 79 KAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------------THSFNAL 138 (702)
T ss_pred HHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 2344443321 123456666665532 345799999999873 3456888
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|++|+.+..+.+.+++ |+. ++.|.+++.++..+.++..+++.++.-+ ..+..+++.+.| +
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 456677777778888888776 885 8999999999999999998877665433 236677777765 7
Q ss_pred HHHHHHHHHHHHH
Q 004384 638 GADITEICQRACK 650 (757)
Q Consensus 638 g~di~~~~~~a~~ 650 (757)
.+++.+++..+..
T Consensus 213 LRdALnLLDQaIa 225 (702)
T PRK14960 213 LRDALSLTDQAIA 225 (702)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765543
No 125
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.52 E-value=5.7e-14 Score=168.05 Aligned_cols=185 Identities=25% Similarity=0.367 Sum_probs=137.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
.-.|+.+.|.++..+.+.+.+.. ..+.+++|+||||||||++|+.+|... +..++.+
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l 241 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL 241 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34577888888887777766442 244679999999999999999999876 3678899
Q ss_pred eCcccc--ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 497 KGPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 497 ~~~~l~--~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
+...++ .+|.|+.+..++.+|+.+....++||||||||.+.+.++.. ++ ..+.+.|...| .++.+.+|
T Consensus 242 ~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~-g~-----~~~a~lLkp~l----~rg~l~~I 311 (821)
T CHL00095 242 DIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAE-GA-----IDAANILKPAL----ARGELQCI 311 (821)
T ss_pred eHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCC-Cc-----ccHHHHhHHHH----hCCCcEEE
Confidence 988876 57899999999999999988888999999999998765322 11 11222232232 34578899
Q ss_pred eeCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc----CCCC-CccCHHHHHHHcCCCC
Q 004384 575 GATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK----SPVS-KDVDLRALAKYTQGFS 637 (757)
Q Consensus 575 ~tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~----~~~~-~~~d~~~la~~~~g~s 637 (757)
|+|+..+ ..|+++.| ||. .|.++.|+.++...|++..... ..+. .+.-+..++..+.+|-
T Consensus 312 gaTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi 381 (821)
T CHL00095 312 GATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYI 381 (821)
T ss_pred EeCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccC
Confidence 9998764 57899999 997 5899999999999999865532 2222 2223566667776654
No 126
>PRK04195 replication factor C large subunit; Provisional
Probab=99.52 E-value=2.1e-13 Score=154.23 Aligned_cols=191 Identities=25% Similarity=0.311 Sum_probs=133.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
..++++++|.+.+++.|..++..... | .+++++||+||||||||++|+++|++++..++.+++++..+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~--------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~--- 77 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLK--------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT--- 77 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc---
Confidence 35688999999999999888753221 1 23577999999999999999999999999999999887532
Q ss_pred CchhHHHHHHHHHHHh------CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 507 GESEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
...++.+...+.. ..+.+|+|||+|.+.... ....++.|+..++. .+..+|+++|.+
T Consensus 78 ---~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----------d~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ---ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----------DRGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ---HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----------chhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1233333333222 246799999999986421 12234556666653 233566788888
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~~~~~a~~~a 652 (757)
..+.+..+| +....|.|++|+..+...+++..+.+.++.- +..+..|++.+. +|++.+++.....+
T Consensus 141 ~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~~a 207 (482)
T PRK04195 141 YDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQAIA 207 (482)
T ss_pred cccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHh
Confidence 888874444 3446899999999999999999987766542 223666666654 48887777665533
No 127
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.6e-13 Score=150.83 Aligned_cols=164 Identities=24% Similarity=0.380 Sum_probs=129.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech------hhh--
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 229 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~------~l~-- 229 (757)
+|-.|+++.+++|.|++...... |-..++-++|+||||+|||++++.||..++..|++++-. ++.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr-------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR-------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc-------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 57899999999999999864322 224577799999999999999999999999999877642 232
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-------------CCeE
Q 004384 230 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 295 (757)
Q Consensus 230 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-------------~~~v 295 (757)
..|+|....++-+.++......| +++|||+|.+.......+. +.|+.++|.-+. -..|
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccccccchhhe
Confidence 36888888999899999988888 8899999999843222221 456666653221 2479
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
++|+|.|..+.|++.|+. |+ ..|+++-+..++...|.+.|+
T Consensus 556 LFicTAN~idtIP~pLlD--RM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLD--RM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EEEEeccccccCChhhhh--hh-heeeccCccHHHHHHHHHHhh
Confidence 999999999999999987 87 568999999999999988764
No 128
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.6e-13 Score=145.13 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=131.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.+...+... +.+..++|+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c 79 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIIC 79 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 357999999999999988776531 234458999999999999999999987532
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.++++. ...-..++.+.+.+... ...|++|||+|.+. ....+.|
T Consensus 80 ~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naL 139 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNAL 139 (363)
T ss_pred HHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 01234566666665432 24699999999872 3456778
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|.+|+.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++. .+..+..+++.+.| +
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 355666677778888888876 87 488999999999999999988776643 22346667777765 7
Q ss_pred HHHHHHHHHHHH
Q 004384 638 GADITEICQRAC 649 (757)
Q Consensus 638 g~di~~~~~~a~ 649 (757)
.+++.+++..+.
T Consensus 214 ~R~al~~l~~~~ 225 (363)
T PRK14961 214 MRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 129
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=7e-13 Score=152.84 Aligned_cols=185 Identities=22% Similarity=0.298 Sum_probs=132.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCce-------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF------------- 493 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~------------- 493 (757)
..+|++|+|++.+++.|+.++... +.+..+||+||||||||++|+++|+.+.+..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC 79 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSC 79 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHH
Confidence 367999999999999998776531 2234579999999999999999999876531
Q ss_pred -----------EEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 494 -----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 494 -----------i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
+.+++.+ ...-..+|.+.+.+. .....|+||||+|.|- ....+.|
T Consensus 80 ~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNAL 139 (944)
T PRK14949 80 VEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNAL 139 (944)
T ss_pred HHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHH
Confidence 1121110 011234555555443 2345799999999972 5678999
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|++|+.+..|.+.+++ |+ .++.|.+++.++....++..+.+.++.-+ ..+..+++.+.| +
T Consensus 140 LKtLEEPP--~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d 213 (944)
T PRK14949 140 LKTLEEPP--EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-S 213 (944)
T ss_pred HHHHhccC--CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998743 356666667778888888887 77 58999999999999999888876544322 236677777765 7
Q ss_pred HHHHHHHHHHHH
Q 004384 638 GADITEICQRAC 649 (757)
Q Consensus 638 g~di~~~~~~a~ 649 (757)
.+++.++|..|.
T Consensus 214 ~R~ALnLLdQal 225 (944)
T PRK14949 214 MRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHHHH
Confidence 788888887655
No 130
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=1e-12 Score=130.29 Aligned_cols=192 Identities=25% Similarity=0.400 Sum_probs=136.9
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 501 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l 501 (757)
...+.++++.|.+..|+.|.+.....+. | .|..++||+|+.|||||+++|++..+. +..++.|...++
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 4568899999999999999877654332 2 356779999999999999999999876 556777776655
Q ss_pred cccccCchhHHHHHHHHHHHhC-CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCeEEEEeeCC
Q 004384 502 LTMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGATN 578 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~tTn 578 (757)
. .+..+++..+.. ..-|||+|++.. . ..+.-...|-..|||-. ..++|+|.+|+|
T Consensus 92 ~---------~l~~l~~~l~~~~~kFIlf~DDLsF--e-----------~~d~~yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 G---------DLPELLDLLRDRPYKFILFCDDLSF--E-----------EGDTEYKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred c---------cHHHHHHHHhcCCCCEEEEecCCCC--C-----------CCcHHHHHHHHHhcCccccCCCcEEEEEecc
Confidence 3 344555554432 346999998643 1 12334567777788753 457999999999
Q ss_pred CCCCCCccc----------cCC-----------CccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHH----HHHHH
Q 004384 579 RPDIIDPAL----------LRP-----------GRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLR----ALAKY 632 (757)
Q Consensus 579 ~~~~ld~al----------lrp-----------gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~----~la~~ 632 (757)
|.+.+..-+ +.| .||...|.|.+||.++..+|++.++++.++.-+. ++. ..|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 965443211 111 3999999999999999999999999888766442 222 23344
Q ss_pred cCCCCHHHHHHHHHH
Q 004384 633 TQGFSGADITEICQR 647 (757)
Q Consensus 633 ~~g~sg~di~~~~~~ 647 (757)
..|.||+--.+.+..
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 567888877766654
No 131
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=8.1e-13 Score=147.55 Aligned_cols=194 Identities=20% Similarity=0.297 Sum_probs=138.5
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEe---------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK--------- 497 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~--------- 497 (757)
.-+|++++|++.+.+.|...+... +.+.++||+||||||||++|+++|+.+++..-...
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 457999999999999888765421 23467999999999999999999998754210000
Q ss_pred -----------Ccccccc--ccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHH
Q 004384 498 -----------GPELLTM--WFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 560 (757)
Q Consensus 498 -----------~~~l~~~--~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 560 (757)
-+++.-. -...+...++.+.+.+...+ ..|++|||+|.+. ...++.||.
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a~naLLk 150 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGAFNALLK 150 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHHHHHHHH
Confidence 0111100 00123456788887776442 4699999999873 345778888
Q ss_pred hhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCHH
Q 004384 561 EMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGA 639 (757)
Q Consensus 561 ~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~ 639 (757)
.|+.. ...+++|.+|+.++.+.+++.+ |+ ..++|.+++.++...+++..+++.++.-+ ..+..+++.++| +.+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SAR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 88853 3456666677888889999887 88 48899999999999999999987765433 236678887775 888
Q ss_pred HHHHHHHHHHHHH
Q 004384 640 DITEICQRACKYA 652 (757)
Q Consensus 640 di~~~~~~a~~~a 652 (757)
++.+++..+...+
T Consensus 225 ~al~~Ldkai~~~ 237 (507)
T PRK06645 225 DAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHHhh
Confidence 8888887776544
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.8e-13 Score=146.94 Aligned_cols=164 Identities=25% Similarity=0.355 Sum_probs=130.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech------hhh--
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM-- 229 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~------~l~-- 229 (757)
.|-.||++.+++|.+++....+.+ -..+.-++|+||||+|||+|++.||..++..|+.++-. ++.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~-------~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK-------KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc-------cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 568999999999999988633222 12455699999999999999999999999999988743 332
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-------------CCeE
Q 004384 230 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-------------RAHV 295 (757)
Q Consensus 230 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-------------~~~v 295 (757)
..|.|..+.++-+-+..+....| ++++||||.+.......+. +.|+..+|.-+. -..|
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCChH-------HHHHhhcCHhhcCchhhccccCccchhhe
Confidence 36889899999999999988888 8999999999876443332 445666553221 2479
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
++|+|.|..+.|+..|+. |+ ..|+++-+.+.+..+|.+.|+
T Consensus 468 mFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhc
Confidence 999999999999999987 77 668999999999999998764
No 133
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.48 E-value=7.4e-13 Score=137.89 Aligned_cols=149 Identities=32% Similarity=0.525 Sum_probs=110.6
Q ss_pred cCCCCCcccccChHHHHH---HHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004384 151 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 227 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~---~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~ 227 (757)
.+++-++++++|.++.+. .|+.+++. ..-.+++|||||||||||||+.||+..+..|..++...
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~-------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEA-------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhc-------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 567778999999998763 35555543 22346999999999999999999999999999988632
Q ss_pred hhhhccchhHHHHHHHHHHHHhcC----CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-
Q 004384 228 IMSKLAGESESNLRKAFEEAEKNA----PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 302 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~~~~----p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn- 302 (757)
..-+.++.+++.++... ..|||+||||.+-...+ ..|+..++ ++.+++||+|.
T Consensus 84 -------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhc----CCeEEEEeccCC
Confidence 23456888898885532 47999999998854432 34555553 46788887664
Q ss_pred CC-CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHH
Q 004384 303 RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 337 (757)
Q Consensus 303 ~~-~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 337 (757)
+| -.+++++++ |. +.+++.+.+.++-.++++.
T Consensus 142 NPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 142 NPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred CCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHH
Confidence 44 478999998 44 4578888888888877765
No 134
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=9.6e-13 Score=145.93 Aligned_cols=203 Identities=24% Similarity=0.325 Sum_probs=127.7
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCcccccc-
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTM- 504 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~- 504 (757)
+.+.|-++..+.|...+..... + ..+.+++++||||+|||++++.++.++ +..++.+++....+.
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~--------~-~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR--------G-SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 3455666665666555432111 1 223559999999999999999999876 467888887643221
Q ss_pred ---------ccC-------ch-hHHHHHHHHHHHh-CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC
Q 004384 505 ---------WFG-------ES-EANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS 566 (757)
Q Consensus 505 ---------~~g-------~~-e~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~ 566 (757)
..+ .+ ......+++.... ..+.||+|||+|.+.... ....+..|+..++...
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~~~~ 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHEEYP 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhhccC
Confidence 111 11 2223333443332 346899999999997211 1345677776666543
Q ss_pred CCCeEEEEeeCCCCC---CCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhccCC---CCCccCHHHHHHHcCCC--C
Q 004384 567 AKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRKSP---VSKDVDLRALAKYTQGF--S 637 (757)
Q Consensus 567 ~~~~v~vi~tTn~~~---~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~l~~~~---~~~~~d~~~la~~~~g~--s 637 (757)
. .++.+|+++|.++ .+++.+.+ ||. ..|+|++++.++..+|++..++... .-.+.-++.+++.+.+. .
T Consensus 171 ~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 247 (394)
T PRK00411 171 G-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGD 247 (394)
T ss_pred C-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCc
Confidence 2 3788888888764 56666655 663 6789999999999999999886421 11222356666666432 2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004384 638 GADITEICQRACKYAIRE 655 (757)
Q Consensus 638 g~di~~~~~~a~~~a~~~ 655 (757)
.+.+-.+|..|+..|..+
T Consensus 248 ~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 248 ARVAIDLLRRAGLIAERE 265 (394)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 344557788777777654
No 135
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.6e-12 Score=147.97 Aligned_cols=185 Identities=21% Similarity=0.322 Sum_probs=133.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C 79 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNC 79 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHH
Confidence 357999999999999998776531 233458999999999999999999987552
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.+++.+ . ..-..+|.+.+.+. .....|+||||+|.+- ....|.|
T Consensus 80 ~~i~~g~~~D~ieidaas----~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NAL 139 (647)
T PRK07994 80 REIEQGRFVDLIEIDAAS----R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNAL 139 (647)
T ss_pred HHHHcCCCCCceeecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHH
Confidence 23333321 0 11234555554443 3345799999999973 4567999
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+.- ...+.+|++|+.++.|.+.+++ |+ ..++|.+++.++....++..+++.++..+ ..+..+++.++| +
T Consensus 140 LKtLEEP--p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s 213 (647)
T PRK07994 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-S 213 (647)
T ss_pred HHHHHcC--CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9999874 3466677778888888888887 86 69999999999999999988876655433 335677777775 7
Q ss_pred HHHHHHHHHHHH
Q 004384 638 GADITEICQRAC 649 (757)
Q Consensus 638 g~di~~~~~~a~ 649 (757)
.++..+++..|.
T Consensus 214 ~R~Al~lldqai 225 (647)
T PRK07994 214 MRDALSLTDQAI 225 (647)
T ss_pred HHHHHHHHHHHH
Confidence 777777776554
No 136
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.47 E-value=5.2e-13 Score=147.86 Aligned_cols=169 Identities=12% Similarity=0.226 Sum_probs=109.4
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccC
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 541 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 541 (757)
..+++||||+|+|||+|++++++++ +..+++++..++...+.......-...|..... .+.+++|||++.+.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~-~~dvLiIDDiq~l~~k~- 218 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYR-NVDALFIEDIEVFSGKG- 218 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcc-cCCEEEEcchhhhcCCh-
Confidence 3569999999999999999999875 567788887766554332211111223544333 35799999999985431
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC---CCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhc
Q 004384 542 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLR 616 (757)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~ 616 (757)
.. ...|+..++.+...++.+|+++++.|. .+++.+.+ ||. ..+.+++|+.++|.+|++..++
T Consensus 219 --------~~---qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 219 --------AT---QEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred --------hh---HHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 11 223333333222223455666655564 45678887 996 7889999999999999999998
Q ss_pred cCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 617 KSPVSKDVD-LRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 617 ~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
..++.-+.+ ++.+|.... -+.+++.+.+...+
T Consensus 286 ~~~~~l~~evl~~la~~~~-~dir~L~g~l~~l~ 318 (445)
T PRK12422 286 ALSIRIEETALDFLIEALS-SNVKSLLHALTLLA 318 (445)
T ss_pred HcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence 766543333 444666554 35667766666554
No 137
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.46 E-value=5.8e-13 Score=147.96 Aligned_cols=172 Identities=17% Similarity=0.275 Sum_probs=113.1
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchh-HHHHHHHHHHHhCCCeEEEEecccchhcc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESE-ANVREIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e-~~i~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
..++||||+|+|||+|++++++++ +..++++++.++...+..... ..+.. |.......+.+|++||++.+.++
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 459999999999999999999875 346788888877655432211 11222 33333335789999999998653
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC---CccccCCCccc--eEEEecCCCHHHHHHHHHHh
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 614 (757)
. .....|+..++.+...++.+|+++.+.|..+ ++.+.+ ||. .++.+++||.++|.+|++..
T Consensus 210 ~------------~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~ 275 (440)
T PRK14088 210 T------------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKM 275 (440)
T ss_pred H------------HHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHH
Confidence 1 1223343444433334455666666777654 456666 775 67889999999999999999
Q ss_pred hccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 615 LRKSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 615 l~~~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
++..++.-+. -+..||+...| +.+++..++......+.
T Consensus 276 ~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 8765443222 25666766654 77888888776554443
No 138
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=5.7e-13 Score=149.83 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=134.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
.-+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 79 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENC 79 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHH
Confidence 357999999999999998887531 234458999999999999999999987542
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.+++++ ...-..+|.+.+.+.. ....|++|||+|.+. ....|.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~a~naL 139 (509)
T PRK14958 80 REIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GHSFNAL 139 (509)
T ss_pred HHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HHHHHHH
Confidence 44444332 1223446666665442 335799999999973 3457889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|.+|+.++.+.+.+++ |+ ..++|.+++.++....++..+++.++.-+ ..+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPP--SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccC--CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998754 346666666778888878776 87 47889999999888888888877665422 236677777765 7
Q ss_pred HHHHHHHHHHHHH
Q 004384 638 GADITEICQRACK 650 (757)
Q Consensus 638 g~di~~~~~~a~~ 650 (757)
.+++.+++..+..
T Consensus 214 lR~al~lLdq~ia 226 (509)
T PRK14958 214 VRDALSLLDQSIA 226 (509)
T ss_pred HHHHHHHHHHHHh
Confidence 7888888866643
No 139
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=1.6e-12 Score=146.02 Aligned_cols=171 Identities=15% Similarity=0.288 Sum_probs=115.0
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhccc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 540 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r 540 (757)
..++|||++|+|||+|++++++++ +..++++++.++...+...........|.+-.. .+.+|+||||+.+.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~-~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYR-EMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhh-cCCEEEEehhccccCCH
Confidence 349999999999999999999976 457788998888776654333323334544333 35799999999986532
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC-CC---CCCccccCCCccc--eEEEecCCCHHHHHHHHHHh
Q 004384 541 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-PD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~-~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 614 (757)
.....|+..++.+...++.+|| |+|+ |. .+++.|.+ ||. .++.+..||.+.|.+||+.+
T Consensus 394 ------------~tqeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 394 ------------STQEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred ------------HHHHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHH
Confidence 1123333344433333344555 5554 43 56778887 885 66689999999999999999
Q ss_pred hccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 615 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 615 l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
++..++.-+.+ ++.|+.... -+.++|..++......|.
T Consensus 459 a~~r~l~l~~eVi~yLa~r~~-rnvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 459 AVQEQLNAPPEVLEFIASRIS-RNIRELEGALIRVTAFAS 497 (617)
T ss_pred HHhcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHH
Confidence 98776554333 455666654 367888887776554443
No 140
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.44 E-value=1.9e-12 Score=140.52 Aligned_cols=187 Identities=22% Similarity=0.332 Sum_probs=120.0
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC-----CceEEEeCcccc
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 502 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l~ 502 (757)
.+|+++.|.+++++.|...+..+ ...+++|+||||||||++|++++.++. .+++.++++++.
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFF 78 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhh
Confidence 46889999999999988876531 113599999999999999999999873 346777877654
Q ss_pred ccc-------------cCc-------hhHHHHHHHHHHHh-----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHH
Q 004384 503 TMW-------------FGE-------SEANVREIFDKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 557 (757)
Q Consensus 503 ~~~-------------~g~-------~e~~i~~lf~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 557 (757)
..+ .+. ....++.+.+.... ..+.++++||+|.+.. ...+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------~~~~~ 144 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------DAQQA 144 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------------HHHHH
Confidence 221 111 01223333333222 2246999999998732 22345
Q ss_pred HHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCC
Q 004384 558 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGF 636 (757)
Q Consensus 558 ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~ 636 (757)
|+..|+.... ... +|.+|+.+..+.+.+.+ |+ ..+.|++|+.++...+++..+++.++. .+..+..+++.+.
T Consensus 145 L~~~le~~~~-~~~-~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~-- 217 (337)
T PRK12402 145 LRRIMEQYSR-TCR-FIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG-- 217 (337)
T ss_pred HHHHHHhccC-CCe-EEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--
Confidence 5555655433 233 44455556666677766 76 478999999999999999988776654 2233566666653
Q ss_pred CHHHHHHHHHHHHH
Q 004384 637 SGADITEICQRACK 650 (757)
Q Consensus 637 sg~di~~~~~~a~~ 650 (757)
.+++.+++....
T Consensus 218 --gdlr~l~~~l~~ 229 (337)
T PRK12402 218 --GDLRKAILTLQT 229 (337)
T ss_pred --CCHHHHHHHHHH
Confidence 355555544433
No 141
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=3.6e-12 Score=141.16 Aligned_cols=187 Identities=19% Similarity=0.265 Sum_probs=137.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|+|++|++.+++.|...+... +.+.++||+||+|+||||+|+++|..+.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C 76 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNC 76 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHH
Confidence 357999999999999998765531 33567999999999999999999986532
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.+++++- .+-..++.+.+.+... ...|++|||+|.+. ...+|.|
T Consensus 77 ~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~NaL 136 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAFNAL 136 (491)
T ss_pred HHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHHHHH
Confidence 3455554321 1235577777776543 34699999998873 3467889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|.+|+.++.+.+.+++ |+. .+.|.+++.++....++..+++.++.- +..+..+++.++| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998744 356666777778888888887 774 789999999999999999887766542 2336677777764 7
Q ss_pred HHHHHHHHHHHHHH
Q 004384 638 GADITEICQRACKY 651 (757)
Q Consensus 638 g~di~~~~~~a~~~ 651 (757)
.+++.+.+..+...
T Consensus 211 lR~alslLdqli~y 224 (491)
T PRK14964 211 MRNALFLLEQAAIY 224 (491)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888877776554
No 142
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.3e-12 Score=145.91 Aligned_cols=187 Identities=20% Similarity=0.303 Sum_probs=136.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.|...+... +.+.++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sC 79 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSC 79 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHH
Confidence 457999999999999998876531 334669999999999999999999986542
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.++++. +.....++.+++.+.. ....|+||||+|.+- ....+.|
T Consensus 80 r~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NAL 139 (709)
T PRK08691 80 TQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAM 139 (709)
T ss_pred HHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHH
Confidence 12222211 1223467777776543 234799999998862 3457889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|++||.++.+.+.+++ |+ ..+.|++++.++....++..+++.++.-+ ..+..|++.+.| +
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 99998643 456677777888888888775 87 47888899999999999999987765422 236677777764 7
Q ss_pred HHHHHHHHHHHHHH
Q 004384 638 GADITEICQRACKY 651 (757)
Q Consensus 638 g~di~~~~~~a~~~ 651 (757)
.+++.+++..+...
T Consensus 214 lRdAlnLLDqaia~ 227 (709)
T PRK08691 214 MRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888766553
No 143
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2.7e-12 Score=144.05 Aligned_cols=184 Identities=22% Similarity=0.356 Sum_probs=131.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
...|+++.|++++++.|...+... ..+..+||+|||||||||+|+++|..+.+
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~ 77 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL 77 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH
Confidence 457999999999999998876531 23344799999999999999999998743
Q ss_pred --------ceEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 492 --------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 492 --------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
.++.+++++ ..+-..++.+.+.+.. ..+.+++|||+|.+. ...++.|+
T Consensus 78 ~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~naLL 137 (504)
T PRK14963 78 AVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFNALL 137 (504)
T ss_pred HHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHHHHH
Confidence 133344321 1123445666554433 345799999998752 35578888
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 638 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg 638 (757)
..|+.. ...+++|.+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++.-+ ..+..+++.+.| +.
T Consensus 138 k~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dl 211 (504)
T PRK14963 138 KTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AM 211 (504)
T ss_pred HHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 888864 3356777778888999999887 776 7999999999999999999887765432 235667777664 55
Q ss_pred HHHHHHHHHH
Q 004384 639 ADITEICQRA 648 (757)
Q Consensus 639 ~di~~~~~~a 648 (757)
+++.+.++.+
T Consensus 212 R~aln~Lekl 221 (504)
T PRK14963 212 RDAESLLERL 221 (504)
T ss_pred HHHHHHHHHH
Confidence 5555555554
No 144
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=3.7e-12 Score=145.33 Aligned_cols=186 Identities=25% Similarity=0.355 Sum_probs=136.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++++.+.|...+... ..+..+||+||+|||||++|+.+|..+.+
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C 79 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEIC 79 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHH
Confidence 457999999999999998876531 23455899999999999999999998642
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
+++.++++. +..-..++.+...+... ...|++|||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naL 139 (559)
T PRK05563 80 KAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNAL 139 (559)
T ss_pred HHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 233443321 12345677777776532 35799999999873 3457889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+.. ...+++|.+|+.++.+.+.+++ |+. .+.|++|+.++....++..+++.++.-+ ..+..++..+.| +
T Consensus 140 LKtLEep--p~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEP--PAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCC--CCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9988864 3356666667778999999887 886 6889999999999999998887765433 336667777765 7
Q ss_pred HHHHHHHHHHHHH
Q 004384 638 GADITEICQRACK 650 (757)
Q Consensus 638 g~di~~~~~~a~~ 650 (757)
.+++.+++..+..
T Consensus 214 ~R~al~~Ldq~~~ 226 (559)
T PRK05563 214 MRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777765544
No 145
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.43 E-value=1.1e-11 Score=143.20 Aligned_cols=223 Identities=25% Similarity=0.395 Sum_probs=137.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
..+|+++.|.+...+.+...+..+ .+.+++|+|||||||||+|+++++.. +.+|+.+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~-------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i 216 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP-------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEV 216 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC-------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEE
Confidence 457889999998887776554321 23469999999999999999998765 3578999
Q ss_pred eCcccc-------ccccCchhHH----HHHHHHH----------HHhCCCeEEEEecccchhcccCCCCCCCCcchHHHH
Q 004384 497 KGPELL-------TMWFGESEAN----VREIFDK----------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVL 555 (757)
Q Consensus 497 ~~~~l~-------~~~~g~~e~~----i~~lf~~----------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~ 555 (757)
++..+. ..++|..... .+..+.. .......+||+||++.|-. ...
T Consensus 217 ~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------------~~Q 282 (615)
T TIGR02903 217 DGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------------LLQ 282 (615)
T ss_pred echhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------------HHH
Confidence 887652 1122211110 0111110 0112235999999988632 233
Q ss_pred HHHHHhhcCCC--------------------------CCCeEEEEe-eCCCCCCCCccccCCCccceEEEecCCCHHHHH
Q 004384 556 NQLLTEMDGMS--------------------------AKKTVFIIG-ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRH 608 (757)
Q Consensus 556 ~~ll~~ld~~~--------------------------~~~~v~vi~-tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~ 608 (757)
..|+..|+.-. ...++++|+ ||+.++.+++++.+ ||. .++|++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 44444443210 112355555 55668899999887 997 6789999999999
Q ss_pred HHHHHhhccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccccc
Q 004384 609 QIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIK 687 (757)
Q Consensus 609 ~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 687 (757)
.|++..+++..+.-+.+ +..|++.+ +.|+...+++..+...++.+..... .......|+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~~~~~~~~~~~~------------------~~~~~~~I~ 419 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVYGYALYRAAEAG------------------KENDKVTIT 419 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHHHHHHhc------------------cCCCCeeEC
Confidence 99999998765432222 34444443 3666666666666555444331000 001234799
Q ss_pred HHHHHHHHhhcC
Q 004384 688 AAHFEESMKFAR 699 (757)
Q Consensus 688 ~~~~~~a~~~~~ 699 (757)
.+|++++++.-+
T Consensus 420 ~edv~~~l~~~r 431 (615)
T TIGR02903 420 QDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHhCCCc
Confidence 999999997653
No 146
>PLN03025 replication factor C subunit; Provisional
Probab=99.43 E-value=2.7e-12 Score=137.66 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=120.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC-----CceEEEeCccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 501 (757)
..+++++.|.+++...|+..+... ...+++|+||||||||++|+++|+++. ..++.++.++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~ 75 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD 75 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc
Confidence 356889999999998887764421 113599999999999999999999872 24666666654
Q ss_pred cccccCchhHHHHHHHHHH-H------hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 502 LTMWFGESEANVREIFDKA-R------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a-~------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
.+ ...++...+.. . ...+.|++|||+|.+.. ...+.|+..|+.... ...+|
T Consensus 76 ~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------------~aq~aL~~~lE~~~~--~t~~i 133 (319)
T PLN03025 76 RG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------------GAQQALRRTMEIYSN--TTRFA 133 (319)
T ss_pred cc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------------HHHHHHHHHHhcccC--CceEE
Confidence 22 11233332211 1 12357999999999743 224556666665433 33456
Q ss_pred eeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHH
Q 004384 575 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 575 ~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~~~~~a 648 (757)
.+||.++.+.+++.+ |+. .+.|++|+.++....++..+++.++.- +..+..+++...| |++.+++.-
T Consensus 134 l~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 134 LACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred EEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 677888888888887 874 899999999999999998887765432 2335666666543 555544433
No 147
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=4.1e-12 Score=149.42 Aligned_cols=185 Identities=19% Similarity=0.247 Sum_probs=128.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++|+|++.+++.|...+... +....+||+||+|||||++|+++|+.+.+.
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC 78 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSC 78 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHH
Confidence 357999999999999998876531 233458999999999999999999987531
Q ss_pred ------------eEEEeCccccccccCchhHHHHHHHHH----HHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHH
Q 004384 493 ------------FISVKGPELLTMWFGESEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 556 (757)
Q Consensus 493 ------------~i~v~~~~l~~~~~g~~e~~i~~lf~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 556 (757)
++.+++... -.-..+|.+-+. .......|+||||+|.|- ....|
T Consensus 79 ~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~N 138 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFN 138 (824)
T ss_pred HHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHH
Confidence 223322111 012334444332 333456799999999973 35678
Q ss_pred HHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCC
Q 004384 557 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQG 635 (757)
Q Consensus 557 ~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g 635 (757)
.||+.|+.... .+++|++|+.++.|-+.+.+ |+. ++.|..++.++..++++..+++.++.-+. .+..+++...|
T Consensus 139 aLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 89999987543 56666677788888888876 774 88999999999999999988776654322 24556666654
Q ss_pred CCHHHHHHHHHHHH
Q 004384 636 FSGADITEICQRAC 649 (757)
Q Consensus 636 ~sg~di~~~~~~a~ 649 (757)
+-+++.+++....
T Consensus 214 -dlR~Al~eLEKLi 226 (824)
T PRK07764 214 -SVRDSLSVLDQLL 226 (824)
T ss_pred -CHHHHHHHHHHHH
Confidence 6666666665543
No 148
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.7e-12 Score=144.88 Aligned_cols=183 Identities=19% Similarity=0.281 Sum_probs=126.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++|+|++.+++.|...+... +....+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHH
Confidence 457999999999999998876531 223469999999999999999999987542
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHH----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.+++..- ..-..++.+.+.+ ......|+||||+|.+. ....+.|
T Consensus 80 ~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~a~naL 139 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------REAFNAL 139 (624)
T ss_pred HHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HHHHHHH
Confidence 333433210 0112334333222 23345799999999973 3456888
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~s 637 (757)
|..|+.. ...+++|++||.++.+.+.+++ |+. .+.|++++.++...+++..+.+.++. .+..+..+++.+.| +
T Consensus 140 Lk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-d 213 (624)
T PRK14959 140 LKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-S 213 (624)
T ss_pred HHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 8888863 3467777788888888888776 875 78999999999999999888776543 22235666766654 4
Q ss_pred HHHHHHHHHH
Q 004384 638 GADITEICQR 647 (757)
Q Consensus 638 g~di~~~~~~ 647 (757)
.+++.+++..
T Consensus 214 lR~Al~lLeq 223 (624)
T PRK14959 214 VRDSMSLLGQ 223 (624)
T ss_pred HHHHHHHHHH
Confidence 4454454443
No 149
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=6.1e-12 Score=143.12 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=132.4
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc---------------
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 492 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~--------------- 492 (757)
.+|++++|++.+.+.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 57999999999999998876531 223458999999999999999999987541
Q ss_pred --------------eEEEeCccccccccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHH
Q 004384 493 --------------FISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRV 554 (757)
Q Consensus 493 --------------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~ 554 (757)
++.+++.+ ...-..++.+.+.+...+ ..|++|||+|.+. ...
T Consensus 81 C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred cHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 22222211 112335677766654332 4699999999973 345
Q ss_pred HHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHc
Q 004384 555 LNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYT 633 (757)
Q Consensus 555 ~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~ 633 (757)
.|.||..|+... ..+.+|.+|+.++.+.+.+++ |+ ..++|..++.++..+.++..+++.++.-+. .+..|++.+
T Consensus 141 ~NaLLKtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 788998888633 355666666778888878776 87 589999999999999999888776655332 367777777
Q ss_pred CCCCHHHHHHHHHHHHH
Q 004384 634 QGFSGADITEICQRACK 650 (757)
Q Consensus 634 ~g~sg~di~~~~~~a~~ 650 (757)
.| +.+++.+++..+..
T Consensus 216 ~G-slR~al~lLdq~ia 231 (618)
T PRK14951 216 RG-SMRDALSLTDQAIA 231 (618)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 75 77777777655443
No 150
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=6.5e-12 Score=142.46 Aligned_cols=186 Identities=20% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.|...+... +.+..+||+||+|||||++|+++|+.+.+.
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C 76 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESC 76 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHH
Confidence 357999999999999998876531 233458999999999999999999886531
Q ss_pred ------------eEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHH
Q 004384 493 ------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLN 556 (757)
Q Consensus 493 ------------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 556 (757)
++.++++.. ..-..++.+-+.+. .....|++|||+|.+- ....|
T Consensus 77 ~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~N 136 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFN 136 (584)
T ss_pred HHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHH
Confidence 223332211 01233444444432 2345699999999973 34678
Q ss_pred HHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCC
Q 004384 557 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQG 635 (757)
Q Consensus 557 ~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g 635 (757)
.||..|+... ..+++|++|+.++.|.+++.+ |. .++.|.+++.++..+.++..+++.++.-+. .+..+++.+.
T Consensus 137 ALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~- 210 (584)
T PRK14952 137 ALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGG- 210 (584)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-
Confidence 8999998643 467777777888888888887 75 589999999999999999888876654322 2445555554
Q ss_pred CCHHHHHHHHHHHHH
Q 004384 636 FSGADITEICQRACK 650 (757)
Q Consensus 636 ~sg~di~~~~~~a~~ 650 (757)
-+.+++.+++..+..
T Consensus 211 GdlR~aln~Ldql~~ 225 (584)
T PRK14952 211 GSPRDTLSVLDQLLA 225 (584)
T ss_pred CCHHHHHHHHHHHHh
Confidence 477777777776544
No 151
>PRK06893 DNA replication initiation factor; Validated
Probab=99.40 E-value=2.6e-12 Score=130.77 Aligned_cols=159 Identities=12% Similarity=0.173 Sum_probs=100.1
Q ss_pred ceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCC
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 543 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~ 543 (757)
.++||||||||||+|++++|++. +.+...+...+. ......+++..+ ...++++||++.+.+.+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~~--~~dlLilDDi~~~~~~~--- 107 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENLE--QQDLVCLDDLQAVIGNE--- 107 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhcc--cCCEEEEeChhhhcCCh---
Confidence 48999999999999999999885 223333333211 111123344333 34699999999986431
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCC-eEEEEeeCCCCCCCC---ccccCCCccceEEEecCCCHHHHHHHHHHhhccCC
Q 004384 544 VGDAGGAADRVLNQLLTEMDGMSAKK-TVFIIGATNRPDIID---PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP 619 (757)
Q Consensus 544 ~~~~~~~~~~~~~~ll~~ld~~~~~~-~v~vi~tTn~~~~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~ 619 (757)
..... |+..++.....+ .++|++++..|..++ +.+.++.++...+.+++||.++|.+|++..+...+
T Consensus 108 ------~~~~~---l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 108 ------EWELA---IFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred ------HHHHH---HHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 11222 333333332333 345666666677665 78887444568899999999999999998886555
Q ss_pred CCCccC-HHHHHHHcCCCCHHHHHHHHHHH
Q 004384 620 VSKDVD-LRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 620 ~~~~~d-~~~la~~~~g~sg~di~~~~~~a 648 (757)
+.-+.+ +..|++...| +.+.+.+++...
T Consensus 179 l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 179 IELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred CCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 443333 5667766654 666666666543
No 152
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.40 E-value=1.4e-11 Score=123.98 Aligned_cols=180 Identities=22% Similarity=0.286 Sum_probs=122.3
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC------ceEEEeCcc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISVKGPE 500 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~------~~i~v~~~~ 500 (757)
..+++++.|++.+.+.|...+.. ....++|||||||||||+.|+++|.++.. .....+.++
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 45789999999999999887653 12245999999999999999999998754 234445554
Q ss_pred ccccccCchhHHHHHHHHHHHh---------CC-CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCe
Q 004384 501 LLTMWFGESEANVREIFDKARQ---------SA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 570 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~---------~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 570 (757)
-.+.-++.. + -.-|.+... .+ +.|++|||+|++. ....+.|...||.. ...
T Consensus 99 erGisvvr~--K-ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE~~--s~~ 159 (346)
T KOG0989|consen 99 ERGISVVRE--K-IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTMEDF--SRT 159 (346)
T ss_pred cccccchhh--h-hcCHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHhcc--ccc
Confidence 433322110 1 112222211 12 3799999999973 45667888888874 346
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHcCCCCHHHHHHHH
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITEIC 645 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~ 645 (757)
+.+|..||.++.|.+.+.+ |+. .+.|++...+.....|+....+.++.-+.| +..+++.++| |++...
T Consensus 160 trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ai 228 (346)
T KOG0989|consen 160 TRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAI 228 (346)
T ss_pred eEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHH
Confidence 7778888999999888887 887 667777777777777777777766653333 5566666554 555443
No 153
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.40 E-value=4.5e-12 Score=129.28 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=107.2
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccC
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 541 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 541 (757)
+..++|+||+|||||++|++++..+ +.+++.++++++.... ..+++.... ..+++|||++.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh-
Confidence 4569999999999999999999876 4577888887765321 233333332 3599999999974320
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC---ccccCCCcc--ceEEEecCCCHHHHHHHHHHhhc
Q 004384 542 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRL--DQLIYIPLPDEDSRHQIFKACLR 616 (757)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld---~allrpgRf--~~~i~~~~p~~~~r~~Il~~~l~ 616 (757)
.....+-.++..+. ..+..+|+.++..+..++ +.+.+ || ...+.+|+|+.+++..+++.++.
T Consensus 107 --------~~~~~L~~~l~~~~---~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~ 173 (226)
T TIGR03420 107 --------EWQEALFHLYNRVR---EAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAA 173 (226)
T ss_pred --------HHHHHHHHHHHHHH---HcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHH
Confidence 01222333333322 222345555554554433 56665 66 47899999999999999998876
Q ss_pred cCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 617 KSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 617 ~~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
+.++.-+. -+..|++. -+-+.+++.++++++...+..
T Consensus 174 ~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 174 RRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred HcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 65543222 25666665 345889999998887654444
No 154
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.40 E-value=4.4e-12 Score=147.47 Aligned_cols=181 Identities=25% Similarity=0.392 Sum_probs=120.5
Q ss_pred CCccccccchhhHHH---HhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVKR---ELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~---~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
..+++++.|++++.. .|...+.. ....+++|+||||||||++|+++|+.++..|+.+++...
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-- 88 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-- 88 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh--
Confidence 356788899988764 34444331 112469999999999999999999999988988876421
Q ss_pred cccCchhHHHHHHHHHHH-----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCC
Q 004384 504 MWFGESEANVREIFDKAR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 578 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn 578 (757)
..+.++.++..+. .....++||||||.+.. ...+.|+..++. ..+++|++|+
T Consensus 89 -----~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------------~qQdaLL~~lE~----g~IiLI~aTT 145 (725)
T PRK13341 89 -----GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------------AQQDALLPWVEN----GTITLIGATT 145 (725)
T ss_pred -----hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------------HHHHHHHHHhcC----ceEEEEEecC
Confidence 1223444444432 12356999999998732 223456655543 4566776653
Q ss_pred --CCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc-------CCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHH
Q 004384 579 --RPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK-------SPVSK-DVDLRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 579 --~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~-------~~~~~-~~d~~~la~~~~g~sg~di~~~~~~a 648 (757)
....+++++++ |. .++.|++++.+++..|++..+.. ..+.- +.-+..|++...| +.+++.++++.|
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a 221 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELA 221 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 33568899987 75 47999999999999999998862 22221 1225666766643 566666666665
Q ss_pred H
Q 004384 649 C 649 (757)
Q Consensus 649 ~ 649 (757)
.
T Consensus 222 ~ 222 (725)
T PRK13341 222 V 222 (725)
T ss_pred H
Confidence 4
No 155
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.39 E-value=1.2e-11 Score=135.29 Aligned_cols=186 Identities=23% Similarity=0.348 Sum_probs=132.7
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
...|++++|.+.+++.|.+.+... ..+..+||+||||+|||++|+++|..+..
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c 77 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESC 77 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence 467999999999999998876431 23456899999999999999999988642
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
+++.+++.+ ......++.+++.+...+ ..|+++||+|.+. ....+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~~~~~L 137 (355)
T TIGR02397 78 KEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KSAFNAL 137 (355)
T ss_pred HHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HHHHHHH
Confidence 233333321 122345777887765432 3599999998863 3456788
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
+..|+... ..+++|.+||.++.+.+++.+ |+. .+.|++|+.++..++++..+++.++.-+ ..+..+++.+.| +
T Consensus 138 l~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~ 211 (355)
T TIGR02397 138 LKTLEEPP--EHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-S 211 (355)
T ss_pred HHHHhCCc--cceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887643 356677777888888888887 875 7899999999999999999887765322 235556666654 6
Q ss_pred HHHHHHHHHHHHH
Q 004384 638 GADITEICQRACK 650 (757)
Q Consensus 638 g~di~~~~~~a~~ 650 (757)
.+.+.+.+..+..
T Consensus 212 ~~~a~~~lekl~~ 224 (355)
T TIGR02397 212 LRDALSLLDQLIS 224 (355)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666655544
No 156
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.39 E-value=3.3e-12 Score=137.23 Aligned_cols=156 Identities=21% Similarity=0.259 Sum_probs=108.5
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
..+++++.|.+++++.+...+.. + ..+..++|+||||+|||++|++++.+.+.+++.+++++ .. +
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~ 81 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-I 81 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-H
Confidence 35789999999999998887652 1 12344677999999999999999999998899898876 21 1
Q ss_pred CchhHHHHHHHHHH-HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 507 GESEANVREIFDKA-RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 507 g~~e~~i~~lf~~a-~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
......+....... ....+.+++|||+|.+.. ....+.|...|+... .++.+|++||.++.+++
T Consensus 82 ~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~~L~~~le~~~--~~~~~Ilt~n~~~~l~~ 146 (316)
T PHA02544 82 DFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------------ADAQRHLRSFMEAYS--KNCSFIITANNKNGIIE 146 (316)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------------HHHHHHHHHHHHhcC--CCceEEEEcCChhhchH
Confidence 11111122211111 113468999999998721 112233444455433 35677889999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhh
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l 615 (757)
++.+ ||. .+.|+.|+.+++.++++.++
T Consensus 147 ~l~s--R~~-~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 147 PLRS--RCR-VIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHH
Confidence 9988 996 78999999999988876544
No 157
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=1.3e-11 Score=138.57 Aligned_cols=185 Identities=21% Similarity=0.291 Sum_probs=131.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|+++.|++.+++.|...+... ..+.++||+||+|+|||++|+++|..+.+
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sC 79 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVC 79 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 357899999999999998776421 23456999999999999999999998642
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.++++.. -.-..++.+.+.+...+ ..|++|||+|.+- ....+.|
T Consensus 80 r~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------------~~A~NaL 139 (605)
T PRK05896 80 ESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------------TSAWNAL 139 (605)
T ss_pred HHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------------HHHHHHH
Confidence 2233332210 12234677766555432 3699999999873 2346788
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~s 637 (757)
|..|+... ..+++|++|+.++.|.+++++ |+. .+.|++|+.++....++..+++.++. .+..+..+++.+.| +
T Consensus 140 LKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-d 213 (605)
T PRK05896 140 LKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-S 213 (605)
T ss_pred HHHHHhCC--CcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 88888643 356777777888999999887 876 89999999999999999888766532 22336667777765 6
Q ss_pred HHHHHHHHHHHH
Q 004384 638 GADITEICQRAC 649 (757)
Q Consensus 638 g~di~~~~~~a~ 649 (757)
.+++.+++..+.
T Consensus 214 lR~AlnlLekL~ 225 (605)
T PRK05896 214 LRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHHH
Confidence 666666666543
No 158
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=7.3e-12 Score=141.93 Aligned_cols=186 Identities=24% Similarity=0.333 Sum_probs=132.1
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc---------------
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 492 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~--------------- 492 (757)
.+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+.
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 57999999999999998876531 233458999999999999999999987542
Q ss_pred ---------eEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 493 ---------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 493 ---------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
++.++++. ......++.+.+.+... ...|++|||+|.+. ....|.||
T Consensus 81 ~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLL 140 (527)
T PRK14969 81 EIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAML 140 (527)
T ss_pred HHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHH
Confidence 22222211 11234577777766443 24699999999863 34578899
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 638 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg 638 (757)
..|+... ..+++|++|+.++.+.+.+++ |+ ..+.|.+++.++....++..+++.++..+ ..+..+++.+.| +.
T Consensus 141 K~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-sl 214 (527)
T PRK14969 141 KTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SM 214 (527)
T ss_pred HHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 9998743 456666666777777777766 77 58999999999999888888876655432 235666767654 67
Q ss_pred HHHHHHHHHHHHH
Q 004384 639 ADITEICQRACKY 651 (757)
Q Consensus 639 ~di~~~~~~a~~~ 651 (757)
+++.+++..|...
T Consensus 215 r~al~lldqai~~ 227 (527)
T PRK14969 215 RDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777666543
No 159
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=7.8e-12 Score=140.51 Aligned_cols=185 Identities=22% Similarity=0.294 Sum_probs=127.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++.+++.|...+... +.+..+||+||+|+|||++|+++|..+.+
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC 79 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENC 79 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHH
Confidence 357999999999999888776531 23345899999999999999999997653
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.+++..- .| -..++.+.+.+.. ....|++|||+|.+. ....+.|
T Consensus 80 ~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naL 139 (546)
T PRK14957 80 VAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNAL 139 (546)
T ss_pred HHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHH
Confidence 2233332110 11 2344555554432 345799999998862 4567889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+... ..+++|++|+.+..+.+.+++ |+ ..++|.+++.++....++..+++.++.-+ ..+..+++.+.| +
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99998643 355556566667878777776 88 59999999999999889888877655432 235566666653 6
Q ss_pred HHHHHHHHHHHH
Q 004384 638 GADITEICQRAC 649 (757)
Q Consensus 638 g~di~~~~~~a~ 649 (757)
.+++.+++..+.
T Consensus 214 lR~alnlLek~i 225 (546)
T PRK14957 214 LRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHHHH
Confidence 666666665444
No 160
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.38 E-value=9.3e-12 Score=141.22 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=104.3
Q ss_pred eeeecCCCCChhHHHHHHHHHh----------CCceEEEeCccccccc----------c------C-chhHHHHHHHHHH
Q 004384 468 VLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW----------F------G-ESEANVREIFDKA 520 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~~~~----------~------g-~~e~~i~~lf~~a 520 (757)
++++|+||||||++++.+..++ ...++.|+|..+.+.+ . | .+...+..+|...
T Consensus 784 LYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L 863 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQN 863 (1164)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhh
Confidence 5699999999999999998765 2567889985543221 0 1 1234456677654
Q ss_pred H--hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC---CCCCCccccCCCccce
Q 004384 521 R--QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR---PDIIDPALLRPGRLDQ 595 (757)
Q Consensus 521 ~--~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~---~~~ld~allrpgRf~~ 595 (757)
. .....||+|||||.|... .+.++-.|+.... ....+++|||++|. ++.|+|.+.. ||..
T Consensus 864 ~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~ 928 (1164)
T PTZ00112 864 KKDNRNVSILIIDEIDYLITK-----------TQKVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAF 928 (1164)
T ss_pred hcccccceEEEeehHhhhCcc-----------HHHHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhh--cccc
Confidence 2 233579999999999652 2344444444322 23457999999986 5677788776 6653
Q ss_pred -EEEecCCCHHHHHHHHHHhhccCC-CCCccCHHHHHHHcCCCCHHHHHH
Q 004384 596 -LIYIPLPDEDSRHQIFKACLRKSP-VSKDVDLRALAKYTQGFSGADITE 643 (757)
Q Consensus 596 -~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~d~~~la~~~~g~sg~di~~ 643 (757)
.|.|++|+.+++.+||+..+.... +-.+.-++.+|+.....+ +|++.
T Consensus 929 eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S-GDARK 977 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS-GDIRK 977 (1164)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-CHHHH
Confidence 488999999999999999987542 112222555555443222 35543
No 161
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=2.5e-11 Score=139.04 Aligned_cols=191 Identities=24% Similarity=0.339 Sum_probs=133.5
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEE----------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV---------- 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v---------- 496 (757)
..+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+.+.--..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~ 81 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIE 81 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHH
Confidence 467999999999999998877531 2345589999999999999999998865421000
Q ss_pred ---eCcccccc--ccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC
Q 004384 497 ---KGPELLTM--WFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 567 (757)
Q Consensus 497 ---~~~~l~~~--~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~ 567 (757)
...++... ....+...++.+.+.+... ...|++|||+|.+. ....+.||..|+..
T Consensus 82 ~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKtLEEP-- 145 (725)
T PRK07133 82 NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKTLEEP-- 145 (725)
T ss_pred hhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHHhhcC--
Confidence 00111100 0001234577777776643 34799999999873 24678899999874
Q ss_pred CCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHH
Q 004384 568 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQ 646 (757)
Q Consensus 568 ~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg~di~~~~~ 646 (757)
...+++|++|+.++.|.+.+++ |+. ++.|.+|+.++....++..+.+.++.-+. .+..+|+.+.| +.+++.+++.
T Consensus 146 P~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLe 221 (725)
T PRK07133 146 PKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAE 221 (725)
T ss_pred CCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 3466777777888999999887 885 89999999999999999888776654332 25667776664 5566666665
Q ss_pred HHH
Q 004384 647 RAC 649 (757)
Q Consensus 647 ~a~ 649 (757)
.+.
T Consensus 222 kl~ 224 (725)
T PRK07133 222 QVS 224 (725)
T ss_pred HHH
Confidence 543
No 162
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.1e-11 Score=138.82 Aligned_cols=186 Identities=22% Similarity=0.324 Sum_probs=128.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|+++.|++.+...|...+... ..+..+|||||+|+|||++|+.+|..+.+.
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc 79 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENC 79 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHH
Confidence 457899999999999998876531 233458999999999999999999987531
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.++++. ...-..++.+.+.+.. ..+.|+++||+|.+. ....+.|
T Consensus 80 ~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naL 139 (486)
T PRK14953 80 VEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNAL 139 (486)
T ss_pred HHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHH
Confidence 11121110 0112345666555543 335799999999863 3356788
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~s 637 (757)
|..|+... ..+++|.+|+.++.+.+++.+ |+. .+.|++|+.++...+++..+++.++.-+. .+..+++.+.| +
T Consensus 140 Lk~LEepp--~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~ 213 (486)
T PRK14953 140 LKTLEEPP--PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-G 213 (486)
T ss_pred HHHHhcCC--CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88888643 244555556677888888887 775 79999999999999999998877654332 25666766654 5
Q ss_pred HHHHHHHHHHHHH
Q 004384 638 GADITEICQRACK 650 (757)
Q Consensus 638 g~di~~~~~~a~~ 650 (757)
.+++.+++..+..
T Consensus 214 lr~al~~Ldkl~~ 226 (486)
T PRK14953 214 MRDAASLLDQAST 226 (486)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666665543
No 163
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=7.8e-12 Score=139.11 Aligned_cols=172 Identities=16% Similarity=0.277 Sum_probs=113.6
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhH---HHHHHHHHHHhCCCeEEEEecccchh
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA---NVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~---~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
.+++|||++|+|||+|++++++++ +..++++++.++...+...... .+....+..+ .+.+|++||++.+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~--~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC--QNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc--cCCEEEEecccccc
Confidence 459999999999999999999864 3577888888877665433221 2222222222 34699999999985
Q ss_pred cccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHH
Q 004384 538 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFK 612 (757)
Q Consensus 538 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~ 612 (757)
++ ......|...++.+...++.+|+.+...|+. +++.+.+ ||. .++.+.+|+.++|.+|++
T Consensus 220 ~k------------~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 220 YK------------EKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CC------------HHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHH
Confidence 42 1223344444443333344455554445544 4677776 886 677889999999999999
Q ss_pred HhhccCCCC---CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 613 ACLRKSPVS---KDVDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 613 ~~l~~~~~~---~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
..++..++. .+.-+..|+....| +.+.+.++|..+...+..
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~ 329 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQ 329 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhc
Confidence 999875532 12225566666664 788888888877655544
No 164
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=2.4e-11 Score=124.10 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=99.3
Q ss_pred CceeeecCCCCChhHHHHHHHHHhC---CceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCC
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 542 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 542 (757)
..++|+||+|||||+|+++++.+.. .....+...+... ....+.+..... .+++|||++.+.++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~~--dlliiDdi~~~~~~~-- 113 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQL--SLVCIDNIECIAGDE-- 113 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhhC--CEEEEeChhhhcCCH--
Confidence 4699999999999999999998754 2334444333211 112222222222 589999999985421
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCe-EEEEeeCCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHhhc
Q 004384 543 SVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLR 616 (757)
Q Consensus 543 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vi~tTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~ 616 (757)
...+.+-.+++.+ ...++ .+++.+++.|.. +.|.+.+ |+. .++.+.+|+.+++.++++....
T Consensus 114 -------~~~~~lf~l~n~~---~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~ 181 (235)
T PRK08084 114 -------LWEMAIFDLYNRI---LESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRAR 181 (235)
T ss_pred -------HHHHHHHHHHHHH---HHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHH
Confidence 1222232233222 12233 466666666665 5688887 886 7899999999999999998776
Q ss_pred cCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHH
Q 004384 617 KSPVSKDVD-LRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 617 ~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a 648 (757)
..++.-+.+ ++.|++..+| +.+.+.+++...
T Consensus 182 ~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 182 LRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 554433222 5667777664 677777776653
No 165
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=4.2e-11 Score=131.19 Aligned_cols=187 Identities=20% Similarity=0.226 Sum_probs=125.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
++++-.|+++.|.+..++.|+.++... ..+..+||+||+||||||+|+.+|..++..
T Consensus 11 KyRP~~f~dvVGQe~iv~~L~~~i~~~------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C 78 (484)
T PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSG------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNEC 78 (484)
T ss_pred HhCCCCHHHHhChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCC
Confidence 567788999999999999988877642 113358999999999999999999988652
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.+.+.+ ......|+||||+|.+.. ...+.|
T Consensus 79 ~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NAL 141 (484)
T PRK14956 79 TSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNAL 141 (484)
T ss_pred cHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHH
Confidence 12222110 01122344444333 234457999999998842 234667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
+..++.. ...+++|.+|+.+..+.+.+++ |+ ..+.+..++..+-.+.++..+....+ .++..+..+++..+|-
T Consensus 142 LKtLEEP--p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd- 215 (484)
T PRK14956 142 LKTLEEP--PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGS- 215 (484)
T ss_pred HHHhhcC--CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCh-
Confidence 7777653 3478888888889999999988 76 45778888877776777665543332 2344578888888774
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
.++...++.++
T Consensus 216 ~RdAL~lLeq~ 226 (484)
T PRK14956 216 VRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 166
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.5e-11 Score=136.37 Aligned_cols=187 Identities=16% Similarity=0.234 Sum_probs=127.3
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 219 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------- 219 (757)
.++++-+|++|.|.++.++.|+..+... ..+..+||+||+||||||+++.+++.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~~g------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~ 75 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALDGG------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV 75 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHhcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc
Confidence 3567789999999999999998887641 113357999999999999999999988642
Q ss_pred --------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHH
Q 004384 220 --------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 281 (757)
Q Consensus 220 --------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ 281 (757)
++.++..+ ......++.+++.+. .....|+||||+|.|.. ...+.
T Consensus 76 C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NA 138 (830)
T PRK07003 76 CRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNA 138 (830)
T ss_pred cHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHH
Confidence 22222211 111234555555443 23457999999998843 22456
Q ss_pred HHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCC
Q 004384 282 LLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 360 (757)
Q Consensus 282 Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 360 (757)
|++.|+... .++.+|.+|++++.|.+.+++ |+ ..+.|..+..++-.+.|+..+....+. ++..+..+++...|-
T Consensus 139 LLKtLEEPP--~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 139 MLKTLEEPP--PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGS 213 (830)
T ss_pred HHHHHHhcC--CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 777777643 367788888889999988887 76 678888888888887777665433322 334577777777775
Q ss_pred chhHHHHHHHH
Q 004384 361 VGADLAALCTE 371 (757)
Q Consensus 361 ~~~dl~~l~~~ 371 (757)
. ++...++.+
T Consensus 214 m-RdALsLLdQ 223 (830)
T PRK07003 214 M-RDALSLTDQ 223 (830)
T ss_pred H-HHHHHHHHH
Confidence 4 444444443
No 167
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=1.9e-11 Score=140.11 Aligned_cols=185 Identities=21% Similarity=0.288 Sum_probs=132.7
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++++++.|...+... +.+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c 79 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPC 79 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHH
Confidence 357999999999999998876531 234568999999999999999999986531
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.+++.. ...-..++.+.+.+...+ ..|++|||+|.+. ....|.|
T Consensus 80 ~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naL 139 (576)
T PRK14965 80 VEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNAL 139 (576)
T ss_pred HHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHH
Confidence 33333322 112345777776665332 3699999999873 3457889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 637 (757)
|..|+.. ...+++|.+||.++.|.+.+++ |+. .+.|..++.++....++..+++.++.- +..+..+++.+.| +
T Consensus 140 Lk~LEep--p~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~ 213 (576)
T PRK14965 140 LKTLEEP--PPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-S 213 (576)
T ss_pred HHHHHcC--CCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 9999864 3467777778888999988887 775 888999999998888888887766542 2336667777765 5
Q ss_pred HHHHHHHHHHHH
Q 004384 638 GADITEICQRAC 649 (757)
Q Consensus 638 g~di~~~~~~a~ 649 (757)
-+++.+++..+.
T Consensus 214 lr~al~~Ldqli 225 (576)
T PRK14965 214 MRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHHHHH
Confidence 566666655443
No 168
>PRK04195 replication factor C large subunit; Provisional
Probab=99.33 E-value=3.5e-11 Score=136.18 Aligned_cols=180 Identities=30% Similarity=0.413 Sum_probs=124.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
+..+.+++++.|.++.++++++++..-. + | .++.++||+|||||||||+|+++|++++..++.+++++...
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~-~-------g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWL-K-------G-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHh-c-------C-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 4567789999999999999998886421 1 1 23678999999999999999999999999999998865432
Q ss_pred hccchhHHHHHHHHHHHHh------cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 231 KLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
...+..+...+.. ..+.+|+|||+|.+..+.. ......|+..++. ....+|.++|.+
T Consensus 78 ------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~----~~~~iIli~n~~ 140 (482)
T PRK04195 78 ------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKK----AKQPIILTANDP 140 (482)
T ss_pred ------HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHc----CCCCEEEeccCc
Confidence 1223333333222 2467999999999865321 1223556666653 223455578888
Q ss_pred CCCCH-HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 305 NSIDP-ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 305 ~~ld~-~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
..+.+ .+++ | ...+.++.|+..+...+++..+....+. ++..+..++..+.|
T Consensus 141 ~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G 194 (482)
T PRK04195 141 YDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG 194 (482)
T ss_pred cccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77776 5654 3 3679999999999998888776443332 33457888887755
No 169
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.33 E-value=2.3e-11 Score=143.40 Aligned_cols=202 Identities=21% Similarity=0.283 Sum_probs=135.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh--------
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-------- 229 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~-------- 229 (757)
.++.|+++.+++|.+++...... +-..+..++|+||||||||++++.+|+.++.+++.++.....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~ 394 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGH 394 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccc
Confidence 35899999999999887742211 113466799999999999999999999999998877754321
Q ss_pred -hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc-----c--------CCCeE
Q 004384 230 -SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K--------SRAHV 295 (757)
Q Consensus 230 -~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~-----~--------~~~~v 295 (757)
..+.|.....+...+..+....| +++|||+|.+....... ....|+..++.- . .-.++
T Consensus 395 ~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~-------~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 395 RRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGD-------PASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCC-------HHHHHHHHhccccEEEEecccccccccCCce
Confidence 13455555555555665554455 89999999997653221 124566666531 1 12578
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC-----CCCC------CchhhhHHhH-hcCCCchh
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-----MKLS------DDVDLERIAK-DTHGYVGA 363 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-----~~l~------~~~~l~~la~-~t~g~~~~ 363 (757)
++|+|+|.. .++++++. |+ ..+.+..++.++..+|.+.++.. ..+. .+.-+..+++ .+..+..+
T Consensus 467 ~~i~TaN~~-~i~~aLl~--R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR 542 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLD--RM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVR 542 (784)
T ss_pred EEEEcCCCC-CCCHHHhc--ce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCc
Confidence 999999887 59999998 88 46899999999999998776521 1111 1222445543 33455556
Q ss_pred HHHHHHHHHHHHHHH
Q 004384 364 DLAALCTEAALQCIR 378 (757)
Q Consensus 364 dl~~l~~~a~~~~~~ 378 (757)
.+...+...+...+.
T Consensus 543 ~LeR~I~~i~r~~l~ 557 (784)
T PRK10787 543 SLEREISKLCRKAVK 557 (784)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766665544443
No 170
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=6.7e-11 Score=131.72 Aligned_cols=183 Identities=20% Similarity=0.300 Sum_probs=126.5
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++.++..|...+... ..+..+|||||||+|||++|+++|..+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~ 80 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS 80 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH
Confidence 367999999999999988876531 23456999999999999999999997643
Q ss_pred ----------ceEEEeCccccccccCchhHHHHHHHHHH----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHH
Q 004384 492 ----------NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 557 (757)
Q Consensus 492 ----------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 557 (757)
.++.+++... .| -..++.+-+.. ......|++|||+|.+. ....+.
T Consensus 81 C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~~~~n~ 140 (451)
T PRK06305 81 CKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------KEAFNS 140 (451)
T ss_pred HHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------HHHHHH
Confidence 2333433211 11 12333333222 23456899999999873 235688
Q ss_pred HHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCC
Q 004384 558 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGF 636 (757)
Q Consensus 558 ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~ 636 (757)
|+..|+... ..+++|++||.++.|.+++.+ |+. .++|++++.++....++..+++.++.- +..+..++..+.|
T Consensus 141 LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g- 214 (451)
T PRK06305 141 LLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG- 214 (451)
T ss_pred HHHHhhcCC--CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888743 356666777888889899887 886 799999999999999988887765432 2336667777654
Q ss_pred CHHHHHHHHHH
Q 004384 637 SGADITEICQR 647 (757)
Q Consensus 637 sg~di~~~~~~ 647 (757)
+-+++.+.+..
T Consensus 215 dlr~a~~~Lek 225 (451)
T PRK06305 215 SLRDAESLYDY 225 (451)
T ss_pred CHHHHHHHHHH
Confidence 44444444443
No 171
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.3e-11 Score=136.27 Aligned_cols=186 Identities=16% Similarity=0.232 Sum_probs=125.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
++++.+|+||+|.++.++.|+.++... +.+..+||+||+|+||||+++.+|+.++..
T Consensus 9 KYRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 9 KWRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred HhCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 567778999999999999998887642 113458999999999999999999988651
Q ss_pred ------------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHH
Q 004384 220 ------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERR 277 (757)
Q Consensus 220 ------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~ 277 (757)
++.++... ...-..++.+++... .....|+||||+|.|.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 12222110 111234555555432 34457999999998843 2
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHh
Q 004384 278 IVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD 356 (757)
Q Consensus 278 ~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~ 356 (757)
..+.|++.|+.-. .++.+|.+|+.+..+.+.+++ |+ ..+.+..++.++-.+.|+..+....+. ++..+..++..
T Consensus 140 AaNALLKTLEEPP--~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~ 214 (700)
T PRK12323 140 AFNAMLKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQA 214 (700)
T ss_pred HHHHHHHhhccCC--CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3456777776533 467888888999999999988 66 668888888888777776554332222 22336667777
Q ss_pred cCCCchhHHHHHHHH
Q 004384 357 THGYVGADLAALCTE 371 (757)
Q Consensus 357 t~g~~~~dl~~l~~~ 371 (757)
.+|- .++...++.+
T Consensus 215 A~Gs-~RdALsLLdQ 228 (700)
T PRK12323 215 AQGS-MRDALSLTDQ 228 (700)
T ss_pred cCCC-HHHHHHHHHH
Confidence 6664 4455555444
No 172
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=4.7e-11 Score=133.09 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=119.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 218 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~------------ 218 (757)
++++-+|+++.|.++.++.++.++... ..+..+||+|||||||||+|+++|..++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~~~------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKN------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 567788999999999988888776542 12346899999999999999999998764
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 219 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 219 ------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
.++.+++.. ...-..++.+.+.+.. ....++||||+|.+.. .....|
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~L 137 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNAL 137 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHH
Confidence 233443321 1112334555444332 2346999999998842 123556
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--CCCCCchhhhHHhHhcCC
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHG 359 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g 359 (757)
+..++... ..+++|++|+.+..+++++++ |+ ..+.+..++..+...+++..+.. ..+. +..+..++..+.|
T Consensus 138 Lk~LE~p~--~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~egi~i~-~eal~~Ia~~s~G 210 (472)
T PRK14962 138 LKTLEEPP--SHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEAEGIEID-REALSFIAKRASG 210 (472)
T ss_pred HHHHHhCC--CcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCC
Confidence 66666533 356667777778889999987 76 57899999999988888776543 3333 3347778877765
No 173
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.32 E-value=2.6e-11 Score=136.00 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhh
Q 004384 238 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALR 312 (757)
Q Consensus 238 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~ 312 (757)
++.+..+..+.-..|.+|++|| |.++++...+.+|-..+..+.. .||..+|+.+-+|....
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDE----------PTNHLD~~~i~WLe~~L~~~~g----tviiVSHDR~FLd~V~t 218 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDE----------PTNHLDLESIEWLEDYLKRYPG----TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC----------CCcccCHHHHHHHHHHHHhCCC----cEEEEeCCHHHHHHHhh
Confidence 3456677788888999999999 6777777788888888876654 45556777666655443
No 174
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=3.6e-11 Score=131.78 Aligned_cols=191 Identities=19% Similarity=0.293 Sum_probs=128.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc-----
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL----- 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l----- 501 (757)
..+|++++|++.+.+.+...+... ..+.+++||||||+|||++|+++|..+..+.....+.++
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~ 80 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIF 80 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceE
Confidence 467999999999999888876531 234579999999999999999999987542111100000
Q ss_pred -cccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 502 -LTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 502 -~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
.+.........++.+++.+... .+.++++||+|.+. ...++.|+..|+.. ....++|.+
T Consensus 81 ~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~~--~~~~~~Il~ 144 (367)
T PRK14970 81 ELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEEP--PAHAIFILA 144 (367)
T ss_pred EeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhCC--CCceEEEEE
Confidence 0011112235677778766533 34799999998763 23467788877763 234455556
Q ss_pred CCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 577 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 577 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
|+.+..+.+++.+ |+. .+.|++|+.++...++...+++.++. .+..+..+++.+.| +.+.+.+.+....
T Consensus 145 ~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 145 TTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6777888888876 764 78999999999999999888776653 22345666666553 5555555554443
No 175
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.32 E-value=3.6e-11 Score=122.64 Aligned_cols=175 Identities=13% Similarity=0.185 Sum_probs=110.8
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhccc
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 540 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r 540 (757)
...+++|+||+|||||+||++++.+. +.+++.+++.++... +.. .....++++||+|.+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~-- 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDD-- 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCc--
Confidence 34569999999999999999999875 557777777654321 111 22346999999998632
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCeE-EEEeeCCCCC--CCCccccCCCcc--ceEEEecCCCHHHHHHHHHHhh
Q 004384 541 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNRPD--IIDPALLRPGRL--DQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v-~vi~tTn~~~--~ld~allrpgRf--~~~i~~~~p~~~~r~~Il~~~l 615 (757)
... ..|+..++........ ++++++..|. .+.+.+.+ || ...+.+|+|+.+++..+++...
T Consensus 105 ---------~~~---~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 105 ---------AQQ---IALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred ---------hHH---HHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 112 2333333333233343 4444443332 24456665 77 4799999999999999999887
Q ss_pred ccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHH
Q 004384 616 RKSPVSKDV-DLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEES 694 (757)
Q Consensus 616 ~~~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a 694 (757)
.+.++.-+. -+..|++...| +.+++.++++.-...|... ...||...++++
T Consensus 171 ~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~---------------------------~~~i~~~~~~~~ 222 (227)
T PRK08903 171 AERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ---------------------------KRPVTLPLLREM 222 (227)
T ss_pred HHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh---------------------------CCCCCHHHHHHH
Confidence 665544332 25666665443 7778887777644333222 236888888887
Q ss_pred Hh
Q 004384 695 MK 696 (757)
Q Consensus 695 ~~ 696 (757)
+.
T Consensus 223 l~ 224 (227)
T PRK08903 223 LA 224 (227)
T ss_pred Hh
Confidence 75
No 176
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.31 E-value=1.1e-10 Score=119.50 Aligned_cols=98 Identities=21% Similarity=0.193 Sum_probs=72.6
Q ss_pred EEEeeCCC------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCCCCH
Q 004384 572 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFSG 638 (757)
Q Consensus 572 ~vi~tTn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg 638 (757)
+||.|||+ |.-|+..|+. |+- +|...+++.++.++|+++..+...+..+. -++.|+.....-|-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSL 398 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLD--RLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSL 398 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhh--hee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhH
Confidence 77888887 6677777776 664 77888999999999999999877655433 36777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 639 ADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 639 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
+---+++.-|...|.+++ ...|..+|++.|-.-.
T Consensus 399 RYa~qLL~pa~iiA~~rg--------------------------~~~V~~~dVe~a~~lF 432 (450)
T COG1224 399 RYAVQLLTPASIIAKRRG--------------------------SKRVEVEDVERAKELF 432 (450)
T ss_pred HHHHHhccHHHHHHHHhC--------------------------CCeeehhHHHHHHHHH
Confidence 666777777777777664 2368888888887665
No 177
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.31 E-value=1.5e-11 Score=128.49 Aligned_cols=142 Identities=19% Similarity=0.199 Sum_probs=99.3
Q ss_pred cCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc--ccCchhHH----------HHHHHHHHHhCCCeEEE
Q 004384 462 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN----------VREIFDKARQSAPCVLF 529 (757)
Q Consensus 462 ~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~--~~g~~e~~----------i~~lf~~a~~~~p~il~ 529 (757)
+...++++|.||||||||++++.+|..++.+++.+++...++. ++|..... ....+-.|.. .+++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~ill 139 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALC 139 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEE
Confidence 3445679999999999999999999999999999987655544 44432111 1123334433 347899
Q ss_pred EecccchhcccCCCCCCCCcchHHHHHHHHHh-----hcC----CCCCCeEEEEeeCCCCC------------CCCcccc
Q 004384 530 FDELDSIATQRGSSVGDAGGAADRVLNQLLTE-----MDG----MSAKKTVFIIGATNRPD------------IIDPALL 588 (757)
Q Consensus 530 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~-----ld~----~~~~~~v~vi~tTn~~~------------~ld~all 588 (757)
+||+|..-+ .....++.+|.. +++ +.....+.||||+|..+ .++.|++
T Consensus 140 lDEin~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 140 FDEYDAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred echhhccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 999998532 123344444432 111 11233688999999864 5678999
Q ss_pred CCCccceEEEecCCCHHHHHHHHHHhhcc
Q 004384 589 RPGRLDQLIYIPLPDEDSRHQIFKACLRK 617 (757)
Q Consensus 589 rpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 617 (757)
. ||-.++.++.|+.++-.+|+......
T Consensus 209 D--RF~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 209 D--RWSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred h--heeeEeeCCCCCHHHHHHHHHhhccC
Confidence 8 99989999999999999999877543
No 178
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=3e-11 Score=137.33 Aligned_cols=183 Identities=20% Similarity=0.279 Sum_probs=127.5
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C 79 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSC 79 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHH
Confidence 457999999999999998876531 234569999999999999999999987532
Q ss_pred ----------eEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 493 ----------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 493 ----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+- ....+.|
T Consensus 80 ~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naL 139 (563)
T PRK06647 80 KSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNAL 139 (563)
T ss_pred HHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHH
Confidence 22222211 011234555554333 3445799999999872 3467889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~s 637 (757)
|..|+.. ...+++|++|+.++.|.+++.+ |+. .+.|.+++.++..+.++..+++.++.-+ ..+..+++.+.| +
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 9888863 3456666777778888888887 887 7899999999999999988876654422 235556666655 5
Q ss_pred HHHHHHHHHH
Q 004384 638 GADITEICQR 647 (757)
Q Consensus 638 g~di~~~~~~ 647 (757)
.+++.+++..
T Consensus 214 lR~alslLdk 223 (563)
T PRK06647 214 VRDAYTLFDQ 223 (563)
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 179
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.30 E-value=1.4e-11 Score=128.09 Aligned_cols=132 Identities=26% Similarity=0.356 Sum_probs=93.3
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCc------cccccccCchhHHH---------------------HHHH
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLTMWFGESEANV---------------------REIF 517 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~------~l~~~~~g~~e~~i---------------------~~lf 517 (757)
...++|+||||||||++|+++|..++.+++.+++. ++++.|.+.....+ +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 35699999999999999999999999999998764 44444433221111 1122
Q ss_pred HHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------------CCCeEEEEeeCCCCC--
Q 004384 518 DKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------------AKKTVFIIGATNRPD-- 581 (757)
Q Consensus 518 ~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------------~~~~v~vi~tTn~~~-- 581 (757)
..++. ..++++|||+.+- ..+.+.|+..|+... ...++.||+|+|...
T Consensus 101 ~A~~~--g~~lllDEi~r~~--------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~ 164 (262)
T TIGR02640 101 LAVRE--GFTLVYDEFTRSK--------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYA 164 (262)
T ss_pred HHHHc--CCEEEEcchhhCC--------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccc
Confidence 22222 3599999999852 345566666665311 112567999999863
Q ss_pred ---CCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 004384 582 ---IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 582 ---~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 615 (757)
.+++++++ || ..++++.|+.++-.+|++.+.
T Consensus 165 g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 165 GVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 56889998 98 589999999999999998875
No 180
>PRK08727 hypothetical protein; Validated
Probab=99.30 E-value=4.5e-11 Score=121.95 Aligned_cols=157 Identities=22% Similarity=0.281 Sum_probs=97.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCC
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 542 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 542 (757)
..++|+||+|||||+|+++++..+ +...+.+...++ ...+...++..... .+++|||++.+..+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~l~~~--dlLiIDDi~~l~~~~-- 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA--------AGRLRDALEALEGR--SLVALDGLESIAGQR-- 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh--------hhhHHHHHHHHhcC--CEEEEeCcccccCCh--
Confidence 349999999999999999998765 334445544332 22334455554433 599999999886432
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC---CccccCCCcc--ceEEEecCCCHHHHHHHHHHhhcc
Q 004384 543 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRL--DQLIYIPLPDEDSRHQIFKACLRK 617 (757)
Q Consensus 543 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l---d~allrpgRf--~~~i~~~~p~~~~r~~Il~~~l~~ 617 (757)
.....+-.+++.+ ...+.-+|+.+.+.|..+ ++++.+ || ..++.+++|+.+++.+|++.+...
T Consensus 110 -------~~~~~lf~l~n~~---~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 110 -------EDEVALFDFHNRA---RAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred -------HHHHHHHHHHHHH---HHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 1122222333333 222333555555567655 688887 87 568899999999999999987755
Q ss_pred CCCCCc-cCHHHHHHHcCCCCHHHHHHHHHH
Q 004384 618 SPVSKD-VDLRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 618 ~~~~~~-~d~~~la~~~~g~sg~di~~~~~~ 647 (757)
.++.-+ .-+..|++.+.| +.+.+.+++..
T Consensus 178 ~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~ 207 (233)
T PRK08727 178 RGLALDEAAIDWLLTHGER-ELAGLVALLDR 207 (233)
T ss_pred cCCCCCHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 444322 235667766653 33444444443
No 181
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.30 E-value=9.1e-11 Score=130.23 Aligned_cols=181 Identities=28% Similarity=0.436 Sum_probs=121.3
Q ss_pred cCCCCCcccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004384 151 RLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 227 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~---i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~ 227 (757)
++++-+++++.|.++.+.. +++++.. ....+++|+|||||||||+|++++..++..++.+++..
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~~-------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIEA-------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHHc-------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 4566789999999998766 7766643 12347999999999999999999999999998888643
Q ss_pred hhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-
Q 004384 228 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN- 302 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn- 302 (757)
. ....++.+++.+. .....+|||||+|.+... ..+.|+..++. ..+++|++|+
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-----------~q~~LL~~le~----~~iilI~att~ 129 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-----------QQDALLPHVED----GTITLIGATTE 129 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-----------HHHHHHHHhhc----CcEEEEEeCCC
Confidence 2 1233445555443 235679999999987422 12445555543 3566666653
Q ss_pred -CCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC----C-CCCCchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 303 -RPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN----M-KLSDDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 303 -~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~----~-~l~~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
....+++++++ |+ ..+.++.++.++...+++..+.. . .+ .+..+..++..+.|- .+.+..++..
T Consensus 130 n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i-~~~al~~l~~~s~Gd-~R~aln~Le~ 199 (413)
T PRK13342 130 NPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVEL-DDEALDALARLANGD-ARRALNLLEL 199 (413)
T ss_pred ChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 33478889988 76 67899999999988888765432 1 22 233466777766543 3333343333
No 182
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=9.3e-11 Score=126.46 Aligned_cols=177 Identities=24% Similarity=0.374 Sum_probs=118.9
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCc-----eEEEeCccccccc---------------cCch-hHHHHHHHHHHHh-
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQAN-----FISVKGPELLTMW---------------FGES-EANVREIFDKARQ- 522 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~-----~i~v~~~~l~~~~---------------~g~~-e~~i~~lf~~a~~- 522 (757)
|.++++|||||||||.+++.++.++... +++++|....+.| .|.+ .+....+++....
T Consensus 42 p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~ 121 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKK 121 (366)
T ss_pred CccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhc
Confidence 3459999999999999999999987543 7899987665432 1222 1223344444333
Q ss_pred CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC---CCCccccCCCccc-eEEE
Q 004384 523 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD-QLIY 598 (757)
Q Consensus 523 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~---~ld~allrpgRf~-~~i~ 598 (757)
...-|+++||+|.|..+.+ .++-.|+...+.. ..++.+|+.+|..+ .+||.+.+ +|. ..|.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~ 186 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIV 186 (366)
T ss_pred CCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceee
Confidence 3457999999999986421 4555665555544 56789999999864 77887776 443 5589
Q ss_pred ecCCCHHHHHHHHHHhhccCCCCCc--cC-HHHHHHHcCCC--CHHHHHHHHHHHHHHHHHHH
Q 004384 599 IPLPDEDSRHQIFKACLRKSPVSKD--VD-LRALAKYTQGF--SGADITEICQRACKYAIREN 656 (757)
Q Consensus 599 ~~~p~~~~r~~Il~~~l~~~~~~~~--~d-~~~la~~~~g~--sg~di~~~~~~a~~~a~~~~ 656 (757)
||+++.+|...|++...+....... .+ ++.+|...... +.+-.-.+|+.|+..|-++.
T Consensus 187 F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 187 FPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREG 249 (366)
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999998865322211 12 33334332222 44445568899999888765
No 183
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=4.6e-11 Score=133.59 Aligned_cols=188 Identities=23% Similarity=0.295 Sum_probs=133.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++.+++.|...+... ..+..+|||||+|+|||++|+++|..+..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C 77 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC 77 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH
Confidence 367999999999999998876421 23445799999999999999999988632
Q ss_pred ---------ceEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 492 ---------NFISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 492 ---------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.++.+++++- ..-..++.+.+..... ...|++|||+|.+. ....+.|
T Consensus 78 ~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NAL 137 (535)
T PRK08451 78 QSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNAL 137 (535)
T ss_pred HHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHH
Confidence 1222222110 0134566665543322 23699999998862 4567889
Q ss_pred HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCC
Q 004384 559 LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFS 637 (757)
Q Consensus 559 l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~s 637 (757)
|..|+... ..+.+|.+|+.+..|.+++.+ |. ..++|.+++.++....++..+++.++.- +..+..+++.+.| +
T Consensus 138 LK~LEEpp--~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPP--SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcC--CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 99998753 345555566777899899887 86 4899999999999999988887766542 2346677777765 7
Q ss_pred HHHHHHHHHHHHHHH
Q 004384 638 GADITEICQRACKYA 652 (757)
Q Consensus 638 g~di~~~~~~a~~~a 652 (757)
.+++.+++..|...+
T Consensus 212 lR~alnlLdqai~~~ 226 (535)
T PRK08451 212 LRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888887766554
No 184
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.30 E-value=8.4e-11 Score=120.15 Aligned_cols=122 Identities=26% Similarity=0.503 Sum_probs=90.2
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCc---eEEEeCccccccccCchhHHHHHHHHHHHhC-----CCeEEEEecccchh
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTMWFGESEANVREIFDKARQS-----APCVLFFDELDSIA 537 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~---~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~-----~p~il~iDEid~l~ 537 (757)
.+++|+||||||||+||+.++...+.+ |+.+++.. ..-+.+|.+|+.++.. ...|||+|||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 359999999999999999999988765 77666542 2356789999888653 35899999999974
Q ss_pred cccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC--CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 004384 538 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT--NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 538 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT--n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 615 (757)
.. -...||-.. +++.+++|+|| |..-.++.||+. |+- ++.......+....||.+-+
T Consensus 236 ks--------------QQD~fLP~V----E~G~I~lIGATTENPSFqln~aLlS--RC~-VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 236 KS--------------QQDTFLPHV----ENGDITLIGATTENPSFQLNAALLS--RCR-VFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred hh--------------hhhccccee----ccCceEEEecccCCCccchhHHHHh--ccc-eeEeccCCHHHHHHHHHHHH
Confidence 31 123444433 35568888887 556688999998 775 66667777888888887744
No 185
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=5.3e-11 Score=135.87 Aligned_cols=192 Identities=21% Similarity=0.233 Sum_probs=133.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEe-C-------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK-G------- 498 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~-~------- 498 (757)
..+|++++|++.+++.|...+... +.+.++||+||+|+|||++|+++|+.+.+.....+ +
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 357999999999999998876531 23567999999999999999999998764321111 0
Q ss_pred -------------cccccccc--CchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 499 -------------PELLTMWF--GESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 499 -------------~~l~~~~~--g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
++++.... .-.-..+|.+.+.++..+ ..|++|||+|.+. ....+.||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~a~naLL 153 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TAAFNALL 153 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HHHHHHHH
Confidence 11110000 011345777777665433 4799999999873 34578889
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 638 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg 638 (757)
..|+.... .+++|.+|+.++.+.+.+++ |+. .+.|..|+.++....++..+++.++.-+ ..+..+++.+.| +.
T Consensus 154 KtLEePp~--~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dl 227 (598)
T PRK09111 154 KTLEEPPP--HVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SV 227 (598)
T ss_pred HHHHhCCC--CeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 88887443 45555566777777777776 874 8999999999999999998887765433 235566766664 77
Q ss_pred HHHHHHHHHHHH
Q 004384 639 ADITEICQRACK 650 (757)
Q Consensus 639 ~di~~~~~~a~~ 650 (757)
+++.+.+..+..
T Consensus 228 r~al~~Ldkli~ 239 (598)
T PRK09111 228 RDGLSLLDQAIA 239 (598)
T ss_pred HHHHHHHHHHHh
Confidence 777777766543
No 186
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1e-10 Score=127.41 Aligned_cols=184 Identities=20% Similarity=0.308 Sum_probs=122.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------------
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 219 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------------- 219 (757)
.|++|+|++..++.++.++..+..++. .++...+..+||+||+|+|||++|+.+|..+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~ 79 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTV 79 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence 478999999999999999987543322 2233446679999999999999999999876432
Q ss_pred -------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 220 -------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 220 -------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
+..+.... . .-.-..++.+++.+.. ....|+||||+|.+.+. ..+.|+..++.
T Consensus 80 ~~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk~LEe 143 (394)
T PRK07940 80 LAGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLKAVEE 143 (394)
T ss_pred hcCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHHHhhc
Confidence 11111100 0 1122346777766543 33469999999988432 23567777876
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHH
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA 367 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~ 367 (757)
... ++++|.+|+.++.+.|.+++ |+ ..+.++.|+.++..++|.... .+. ......++..++|..+..+.-
T Consensus 144 p~~--~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 144 PPP--RTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCC--CCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 432 34444455558899999998 76 689999999988777775321 222 334667788888887655433
No 187
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.28 E-value=6.9e-11 Score=134.47 Aligned_cols=199 Identities=24% Similarity=0.383 Sum_probs=126.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCe
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAF 219 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~ 219 (757)
++.++.+|+++.|.+..++.++..+.. ..+.+++|+||||||||++|+++.... +.+
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al~~-------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~ 123 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAALCG-------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAA 123 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCC
Confidence 345677899999999999888765432 235689999999999999999997642 356
Q ss_pred EEEEechhh-------hhhccchhHHHH---HHHHH----------HHHhcCCeEEEEcccccccCCCCCCchHHHHHHH
Q 004384 220 FFCINGPEI-------MSKLAGESESNL---RKAFE----------EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 279 (757)
Q Consensus 220 ~~~v~~~~l-------~~~~~g~~~~~l---~~vf~----------~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 279 (757)
|+.++|... .....+.....+ ...|. ........+|||||++.+.+. ..
T Consensus 124 fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-----------~q 192 (531)
T TIGR02902 124 FVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-----------QM 192 (531)
T ss_pred EEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-----------HH
Confidence 888887531 111111000000 00000 011223469999999988543 22
Q ss_pred HHHHHHhhcc---------------------------cCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHH
Q 004384 280 SQLLTLMDGL---------------------------KSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 332 (757)
Q Consensus 280 ~~Ll~~l~~~---------------------------~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 332 (757)
+.|+..++.- ......++.+|++.++.+++++++ |+ ..+.++.++.++..
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hh-heeeCCCCCHHHHH
Confidence 3344444220 011123445667789999999998 76 46888899999999
Q ss_pred HHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHH
Q 004384 333 EVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCI 377 (757)
Q Consensus 333 ~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~ 377 (757)
++++..+++..+. ++..++.++..+. +++++.++++.|+..+.
T Consensus 270 ~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~ 313 (531)
T TIGR02902 270 EIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIAL 313 (531)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHh
Confidence 9999887655432 2334566665543 67888888888876554
No 188
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=7.2e-11 Score=120.49 Aligned_cols=160 Identities=16% Similarity=0.198 Sum_probs=106.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCC
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGS 542 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~ 542 (757)
..++|+||+|+|||+|++++++++ +...++++..++... ...+.+..+.. .++++|+++.+.++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~--- 112 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGK--- 112 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCC---
Confidence 568999999999999999999764 456777777766542 12333333333 48999999987543
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC---CccccCCCccc--eEEEecCCCHHHHHHHHHHhhcc
Q 004384 543 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRK 617 (757)
Q Consensus 543 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~~ 617 (757)
......|...++.....++.+|++++..|..+ .|.+.+ ||. .++.+.+|+.+++.++++.....
T Consensus 113 ---------~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 113 ---------ADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred ---------hHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 11223455555554455567788887766544 578777 885 67778999999999999966655
Q ss_pred CCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004384 618 SPVSKDV-DLRALAKYTQGFSGADITEICQRACK 650 (757)
Q Consensus 618 ~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~~ 650 (757)
.++.-+. -++.+++..++ +.+.+.+++..-..
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~ 214 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQ 214 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 4433222 25566666653 77777777665443
No 189
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=1.7e-10 Score=114.65 Aligned_cols=167 Identities=22% Similarity=0.350 Sum_probs=116.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 227 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~ 227 (757)
..+.+.++++.|++.++++|.+-....+. | .+..++||+|+.|||||++++++..+. +..++.|...+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 45678899999999999998766543221 1 467889999999999999999999876 56677777655
Q ss_pred hhhhccchhHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--CCCeEEEEEecCCC
Q 004384 228 IMSKLAGESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--SRAHVIVIGATNRP 304 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--~~~~v~vI~atn~~ 304 (757)
+. .+..+++... ....-|||+|++.+=... . -...|..+|++-. ...+|++.+|+|+.
T Consensus 91 L~---------~l~~l~~~l~~~~~kFIlf~DDLsFe~~d-------~---~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 91 LG---------DLPELLDLLRDRPYKFILFCDDLSFEEGD-------T---EYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred hc---------cHHHHHHHHhcCCCCEEEEecCCCCCCCc-------H---HHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 42 2333444433 234579999997642211 1 1255667777532 23578888999876
Q ss_pred CCCCH---------------------HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC
Q 004384 305 NSIDP---------------------ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS 345 (757)
Q Consensus 305 ~~ld~---------------------~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~ 345 (757)
..+.. .+.-..||...+.+..|+.++-++|++.++....+.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 43322 222235899999999999999999999988755544
No 190
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.2e-10 Score=128.43 Aligned_cols=187 Identities=19% Similarity=0.273 Sum_probs=124.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|+++.|++.+++.|...+.. + +.+..+||+||||+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~ 79 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTE 79 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCC
Confidence 35799999999999998877652 1 234569999999999999999999987542
Q ss_pred ------------------eEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcc
Q 004384 493 ------------------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGA 550 (757)
Q Consensus 493 ------------------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~ 550 (757)
++.+++.+. .....++.+.+.+.. ....|+|+||+|.+.
T Consensus 80 ~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------- 140 (397)
T PRK14955 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------- 140 (397)
T ss_pred CCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC-------------
Confidence 222222110 112455555554422 234699999999873
Q ss_pred hHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHH
Q 004384 551 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRAL 629 (757)
Q Consensus 551 ~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~l 629 (757)
....+.|+..|+.... ..++|.+|+.+..+-+++.+ |+. .+.|++++.++..+.++..+++.++. .+..+..+
T Consensus 141 -~~~~~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l 214 (397)
T PRK14955 141 -IAAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLI 214 (397)
T ss_pred -HHHHHHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2345677888875433 44455555667777778776 775 78999999999888888888765543 22335666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 004384 630 AKYTQGFSGADITEICQRACKY 651 (757)
Q Consensus 630 a~~~~g~sg~di~~~~~~a~~~ 651 (757)
++.+.| +.+.+.+.+..+...
T Consensus 215 ~~~s~g-~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 215 GRKAQG-SMRDAQSILDQVIAF 235 (397)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh
Confidence 766654 556666666554443
No 191
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.6e-10 Score=125.87 Aligned_cols=187 Identities=21% Similarity=0.272 Sum_probs=123.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++.+|++|.|.++.++.++..+... ..+..++|+||+|+||||+|+++|..+...
T Consensus 9 kyrP~~~~~iiGq~~~~~~l~~~~~~~------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c 76 (363)
T PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSLG------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC 76 (363)
T ss_pred HhCCCchhhccChHHHHHHHHHHHHcC------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 567788999999999999988877541 123458999999999999999999988532
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.+.+.+.. ....+++|||+|.+.. ...+.|
T Consensus 77 ~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naL 139 (363)
T PRK14961 77 IICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNAL 139 (363)
T ss_pred HHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHH
Confidence 11122110 0122345555554432 2346999999998742 123456
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+.+|.+|+.++.+.+.+++ |+ ..++++.|+.++..+++...++.... .++..+..++..+.| .
T Consensus 140 Lk~lEe~~--~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~ 213 (363)
T PRK14961 140 LKTLEEPP--QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-S 213 (363)
T ss_pred HHHHhcCC--CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77776543 355566667777888888877 66 67899999999998888776554332 233456777777765 3
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
.+++..++..+
T Consensus 214 ~R~al~~l~~~ 224 (363)
T PRK14961 214 MRDALNLLEHA 224 (363)
T ss_pred HHHHHHHHHHH
Confidence 44454544443
No 192
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=2.7e-10 Score=131.07 Aligned_cols=183 Identities=20% Similarity=0.277 Sum_probs=127.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
...|+++.|++.+++.|...+... +...++||+||+|+|||++|+++|+.+.+.
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~ 79 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCE 79 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccH
Confidence 467999999999999998876531 123469999999999999999999987642
Q ss_pred ------------eEEEeCccccccccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHH
Q 004384 493 ------------FISVKGPELLTMWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLN 556 (757)
Q Consensus 493 ------------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~ 556 (757)
++.++. ..+.....++.+...+... ...|+||||+|.+- ....+
T Consensus 80 ~C~~i~~g~h~D~~ei~~------~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~n 139 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDA------ASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFN 139 (620)
T ss_pred HHHHHhcCCCccEEEEec------cccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHH
Confidence 122211 1123345778888776543 34699999999872 35678
Q ss_pred HHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCC
Q 004384 557 QLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQG 635 (757)
Q Consensus 557 ~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g 635 (757)
.||..|+.- ...+++|++|+.++.+-+.+.+ |+. .+.|+.++.++....++..+++.++.- ...+..+++.+.|
T Consensus 140 aLLK~LEeP--p~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEEP--PPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhcC--CcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 899999863 3456677777778888888876 775 788999988888877777766654331 1236666777665
Q ss_pred CCHHHHHHHHHH
Q 004384 636 FSGADITEICQR 647 (757)
Q Consensus 636 ~sg~di~~~~~~ 647 (757)
+.+++.+++..
T Consensus 215 -~lr~A~~lLek 225 (620)
T PRK14948 215 -GLRDAESLLDQ 225 (620)
T ss_pred -CHHHHHHHHHH
Confidence 33555554443
No 193
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.26 E-value=5e-11 Score=126.60 Aligned_cols=157 Identities=23% Similarity=0.392 Sum_probs=103.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC-------C--ceEEEe
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------A--NFISVK 497 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~-------~--~~i~v~ 497 (757)
...|+++.|++++++.+.-....+ ...++||+||||+|||++|+++|..+. . ++..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467999999999998776432211 124699999999999999999999872 2 222211
Q ss_pred C-ccc--------ccc---------------ccCch--hHHH---HHHHH-----HHHhCCCeEEEEecccchhcccCCC
Q 004384 498 G-PEL--------LTM---------------WFGES--EANV---REIFD-----KARQSAPCVLFFDELDSIATQRGSS 543 (757)
Q Consensus 498 ~-~~l--------~~~---------------~~g~~--e~~i---~~lf~-----~a~~~~p~il~iDEid~l~~~r~~~ 543 (757)
+ +++ ... .+|.. ++.+ ...|+ .|. -.++|+|||+.+-
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~---~GiL~lDEInrl~------ 141 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARAN---RGYLYIDEVNLLE------ 141 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcC---CCeEEecChHhCC------
Confidence 1 011 000 11100 0000 00111 121 1499999999863
Q ss_pred CCCCCcchHHHHHHHHHhhcCCC-----------CCCeEEEEeeCCCCC-CCCccccCCCccceEEEecCCCH-HHHHHH
Q 004384 544 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-DSRHQI 610 (757)
Q Consensus 544 ~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~tTn~~~-~ld~allrpgRf~~~i~~~~p~~-~~r~~I 610 (757)
..+++.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.+++|.. ++|.+|
T Consensus 142 --------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~i 211 (334)
T PRK13407 142 --------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEV 211 (334)
T ss_pred --------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHH
Confidence 466777777775421 234789999999755 68889998 9999999998866 999999
Q ss_pred HHHhh
Q 004384 611 FKACL 615 (757)
Q Consensus 611 l~~~l 615 (757)
++...
T Consensus 212 l~~~~ 216 (334)
T PRK13407 212 IRRRD 216 (334)
T ss_pred HHHhh
Confidence 98864
No 194
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.25 E-value=1.2e-10 Score=125.34 Aligned_cols=182 Identities=22% Similarity=0.277 Sum_probs=118.5
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC-----CceEEEeCcccc
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPELL 502 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l~ 502 (757)
.+|+++.|.+++++.+...+... ...+++|+||||||||++++++++++. .+++.++.++-.
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 80 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER 80 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc
Confidence 57899999999999988776421 112489999999999999999999863 345555443321
Q ss_pred ccccCchhHHHHHHH-HHHHh-----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 503 TMWFGESEANVREIF-DKARQ-----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf-~~a~~-----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
+ ...++..+ +.++. ..+.++++||+|.+.. ...+.|+..++.... ...+|.+
T Consensus 81 ~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------------~~~~~L~~~le~~~~--~~~lIl~ 138 (319)
T PRK00440 81 G------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------------DAQQALRRTMEMYSQ--NTRFILS 138 (319)
T ss_pred c------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------------HHHHHHHHHHhcCCC--CCeEEEE
Confidence 1 11122222 22221 2346999999998732 224556666665443 2345556
Q ss_pred CCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHH
Q 004384 577 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 577 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a 648 (757)
+|.+..+.+++.+ |+. .++|++|+.++...+++..+++.++. .+..+..+++.+.| +.+.+.+.++.+
T Consensus 139 ~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~ 207 (319)
T PRK00440 139 CNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAA 207 (319)
T ss_pred eCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 6777777777776 776 68999999999999999999876653 22346667766554 444444444443
No 195
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.1e-10 Score=129.01 Aligned_cols=188 Identities=18% Similarity=0.228 Sum_probs=126.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++-.|++|.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+++.
T Consensus 8 KyRPktFddVIGQe~vv~~L~~aI~~g------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C 75 (702)
T PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERG------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC 75 (702)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC
Confidence 467778999999999999998887631 223568999999999999999999988642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.+- .....++.++..+. .....|++|||+|.+... ..+.|
T Consensus 76 ~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-----------A~NAL 138 (702)
T PRK14960 76 ATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-----------SFNAL 138 (702)
T ss_pred HHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-----------HHHHH
Confidence 233332210 12234555555432 234579999999987432 34567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...++..++.-.+ .++..+..++..+.| .
T Consensus 139 LKtLEEPP--~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-d 212 (702)
T PRK14960 139 LKTLEEPP--EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-S 212 (702)
T ss_pred HHHHhcCC--CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 356666777888888877776 66 56888889988877777665543332 233457778877766 4
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
.+++..++..+.
T Consensus 213 LRdALnLLDQaI 224 (702)
T PRK14960 213 LRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 196
>PLN03025 replication factor C subunit; Provisional
Probab=99.25 E-value=1.1e-10 Score=125.09 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=116.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEe
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCIN 224 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~-----~~~~~v~ 224 (757)
++.++-+++++.|.++.++.|+.++... ...+++|+|||||||||+++++|+++. ..++.++
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln 71 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIARDG-------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN 71 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHhcC-------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec
Confidence 3567778999999999999888776531 123699999999999999999999873 2355566
Q ss_pred chhhhhhccchhHHHHHHHHHHHH-------hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEE
Q 004384 225 GPEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIV 297 (757)
Q Consensus 225 ~~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~v 297 (757)
.++..+ ...++..+.... .....+++|||+|.+... ....|+..++.... ...+
T Consensus 72 ~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-----------aq~aL~~~lE~~~~--~t~~ 132 (319)
T PLN03025 72 ASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-----------AQQALRRTMEIYSN--TTRF 132 (319)
T ss_pred cccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-----------HHHHHHHHHhcccC--CceE
Confidence 544321 112333322211 123579999999988532 12445666655433 2345
Q ss_pred EEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--CCCCCchhhhHHhHhcCC
Q 004384 298 IGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHG 359 (757)
Q Consensus 298 I~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g 359 (757)
+.+||....+.+.+++ |. ..+.++.|+.++....++..++. +.+. +..+..++....|
T Consensus 133 il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~-~~~l~~i~~~~~g 192 (319)
T PLN03025 133 ALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYV-PEGLEAIIFTADG 192 (319)
T ss_pred EEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC
Confidence 5577888888888887 55 46889999999988888766543 3333 3347777776654
No 197
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=2.8e-10 Score=131.72 Aligned_cols=192 Identities=17% Similarity=0.227 Sum_probs=123.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE--------E
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------C 222 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~--------~ 222 (757)
++++.+|++|.|.++.++.|+.++... +-+..+||+||+||||||+|+++|+.++.... +
T Consensus 9 KyRP~tFddIIGQe~Iv~~LknaI~~~------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 9 KWRPATFEQMVGQSHVLHALTNALTQQ------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 567789999999999999988877541 11334799999999999999999999865310 0
Q ss_pred Eechhhhhh-------ccc---hhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 223 INGPEIMSK-------LAG---ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 223 v~~~~l~~~-------~~g---~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
-.|..+... +.+ .....++.+.+... .....|+||||+|.|.. ...+.|+..|+.
T Consensus 77 ~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNALLKtLEE 145 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNALLKTLEE 145 (944)
T ss_pred hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHHHHHHhc
Confidence 001111100 000 11233455544432 23456999999998842 234677888876
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHH
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAA 367 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~ 367 (757)
... .+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...|+..+..-.+ .++..+..++..+.|- .+++..
T Consensus 146 PP~--~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd-~R~ALn 219 (944)
T PRK14949 146 PPE--HVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGS-MRDALS 219 (944)
T ss_pred cCC--CeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 433 56666678888888888887 66 66889999888887777665433222 2333467777777664 344445
Q ss_pred HHHH
Q 004384 368 LCTE 371 (757)
Q Consensus 368 l~~~ 371 (757)
++..
T Consensus 220 LLdQ 223 (944)
T PRK14949 220 LTDQ 223 (944)
T ss_pred HHHH
Confidence 5443
No 198
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3.1e-10 Score=129.76 Aligned_cols=187 Identities=19% Similarity=0.279 Sum_probs=126.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.|+..+... +.+.++||+||+||||||+|+++|+.+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~ 79 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE 79 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC
Confidence 457999999999999988865421 334569999999999999999999987652
Q ss_pred ------------------eEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcc
Q 004384 493 ------------------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGA 550 (757)
Q Consensus 493 ------------------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~ 550 (757)
++.+++... .+...|+.+.+.+. .....|++|||+|.+.
T Consensus 80 ~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------- 140 (620)
T PRK14954 80 PCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------- 140 (620)
T ss_pred CCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC-------------
Confidence 111211110 11245555554442 2334699999998873
Q ss_pred hHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHH
Q 004384 551 ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRAL 629 (757)
Q Consensus 551 ~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~l 629 (757)
....+.||..|+.... .+++|.+|+.++.|-+.+.+ |.. .+.|.+++.++....++..+++.++. .+..+..+
T Consensus 141 -~~a~naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~L 214 (620)
T PRK14954 141 -TAAFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLI 214 (620)
T ss_pred -HHHHHHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2346788888887543 34555555667888888876 764 89999999999888888877765542 23346677
Q ss_pred HHHcCCCCHHHHHHHHHHHHHH
Q 004384 630 AKYTQGFSGADITEICQRACKY 651 (757)
Q Consensus 630 a~~~~g~sg~di~~~~~~a~~~ 651 (757)
++.+.| +.+++.+.+......
T Consensus 215 a~~s~G-dlr~al~eLeKL~~y 235 (620)
T PRK14954 215 ARKAQG-SMRDAQSILDQVIAF 235 (620)
T ss_pred HHHhCC-CHHHHHHHHHHHHHh
Confidence 777764 555555555544333
No 199
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.24 E-value=3.3e-10 Score=124.00 Aligned_cols=217 Identities=26% Similarity=0.313 Sum_probs=132.3
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhh--hCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKS--IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 235 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~--l~i-~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~g~ 235 (757)
|.|+++.++.+...+..+++.-..... -.+ .+..++||+||||||||++|+++|..++.+|+.+++..+.. .|.|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 899999999987666432211110000 011 24567999999999999999999999999999999887653 46665
Q ss_pred hH-HHHHHHHHH----HHhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhccc-----------CCCeEE
Q 004384 236 SE-SNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK-----------SRAHVI 296 (757)
Q Consensus 236 ~~-~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~-----------~~~~v~ 296 (757)
.. ..+..+++. .....++|+||||||.+......+. +.-...+...|+.+|++-. .....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 33 334444432 2334678999999999987633221 1111246677888887421 011344
Q ss_pred EEEecCCCC-------C---------------------------------------------CCHHhhccCCcceEEEeC
Q 004384 297 VIGATNRPN-------S---------------------------------------------IDPALRRFGRFDREIDIG 324 (757)
Q Consensus 297 vI~atn~~~-------~---------------------------------------------ld~~l~r~~rf~~~i~i~ 324 (757)
+|.|+|-.. . +.|++. +|++..+.+.
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl--gRld~iv~f~ 310 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI--GRLPVVATLE 310 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh--CCCCeeeecC
Confidence 555544310 0 122222 5888888898
Q ss_pred CCCHHHHHHHHHH----Hhc---------CCCCC-CchhhhHHhHh--cCCCchhHHHHHHHHHHHHHHH
Q 004384 325 VPDEVGRLEVLRI----HTK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIR 378 (757)
Q Consensus 325 ~p~~~~r~~il~~----~~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 378 (757)
..+.+...+|+.. ..+ ++.+. .+.-++++++. ...|..+.+..++.......+.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 9999888888862 221 11111 22335667664 4456667777777666555443
No 200
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.24 E-value=5.7e-11 Score=127.02 Aligned_cols=175 Identities=29% Similarity=0.442 Sum_probs=120.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhC-CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccc-hh
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-ES 236 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~g-~~ 236 (757)
|.|.++.++.+..++...+++..+...+. -.++.+|||+||||||||++++++|..++.+|+.+++..+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 89999999998777764433322222111 124588999999999999999999999999999999876653 4555 34
Q ss_pred HHHHHHHHHHH---------------------------------------------------------------------
Q 004384 237 ESNLRKAFEEA--------------------------------------------------------------------- 247 (757)
Q Consensus 237 ~~~l~~vf~~a--------------------------------------------------------------------- 247 (757)
+..++.+|+.+
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 44444444433
Q ss_pred ----------------------------------------------------------------------HhcCCeEEEE
Q 004384 248 ----------------------------------------------------------------------EKNAPSIIFI 257 (757)
Q Consensus 248 ----------------------------------------------------------------------~~~~p~il~i 257 (757)
...+-.|+||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0123469999
Q ss_pred cccccccCCCCCCchHH-HHHHHHHHHHHhhccc--------CCCeEEEEEec----CCCCCCCHHhhccCCcceEEEeC
Q 004384 258 DEIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIG 324 (757)
Q Consensus 258 DEid~l~~~~~~~~~~~-~~~~~~~Ll~~l~~~~--------~~~~v~vI~at----n~~~~ld~~l~r~~rf~~~i~i~ 324 (757)
||||.++........++ ..-+.+.|+.++++-. ...++++|++- ..|.++=|.+.. ||...+.+.
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~ 331 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQ 331 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECC
Confidence 99999997653222222 2346677888887622 22466777532 245666677764 999999999
Q ss_pred CCCHHHHHHHHH
Q 004384 325 VPDEVGRLEVLR 336 (757)
Q Consensus 325 ~p~~~~r~~il~ 336 (757)
.++.++..+||.
T Consensus 332 ~L~~edL~rILt 343 (441)
T TIGR00390 332 ALTTDDFERILT 343 (441)
T ss_pred CCCHHHHHHHhc
Confidence 999999988883
No 201
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=5.3e-10 Score=122.69 Aligned_cols=201 Identities=23% Similarity=0.319 Sum_probs=123.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechhh
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPEI 228 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~---------~~~~~v~~~~l 228 (757)
+++.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.++..+. ..++.++|...
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~ 85 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL 85 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence 46899999999998887632211 2346799999999999999999987653 45778887543
Q ss_pred hh----------hcc--c--------hhHHHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhh
Q 004384 229 MS----------KLA--G--------ESESNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 287 (757)
Q Consensus 229 ~~----------~~~--g--------~~~~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~ 287 (757)
.+ ... + .....+..+++... ...+.+++|||+|.+..... .++..|+.+.+
T Consensus 86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~~~~ 157 (365)
T TIGR02928 86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSRARS 157 (365)
T ss_pred CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhcccc
Confidence 21 110 0 01222344444443 24567999999999973211 12334444321
Q ss_pred c-ccCCCeEEEEEecCCCC---CCCHHhhccCCcc-eEEEeCCCCHHHHHHHHHHHhcC-C--CCCCchhhhHH---hHh
Q 004384 288 G-LKSRAHVIVIGATNRPN---SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERI---AKD 356 (757)
Q Consensus 288 ~-~~~~~~v~vI~atn~~~---~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~-~--~l~~~~~l~~l---a~~ 356 (757)
. .....++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++..+.. . ...++..+..+ +..
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 1 11235788888998875 46777766 554 67899999999999999877642 1 11122223333 333
Q ss_pred cCCCchhHHHHHHHHHHHHHHH
Q 004384 357 THGYVGADLAALCTEAALQCIR 378 (757)
Q Consensus 357 t~g~~~~dl~~l~~~a~~~~~~ 378 (757)
+.|.. +.+..+|..|+..+..
T Consensus 236 ~~Gd~-R~al~~l~~a~~~a~~ 256 (365)
T TIGR02928 236 EHGDA-RKAIDLLRVAGEIAER 256 (365)
T ss_pred hcCCH-HHHHHHHHHHHHHHHH
Confidence 44543 3344566666654443
No 202
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.23 E-value=1.5e-10 Score=124.46 Aligned_cols=159 Identities=25% Similarity=0.376 Sum_probs=110.1
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
++.++.+++++.|.++.++.+++.+... ..+..++|+||||+|||+++++++..++..++.+++.+
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-- 78 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKKG------------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-- 78 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--
Confidence 3567778999999999999998887531 12345666999999999999999999988888888865
Q ss_pred hhccchhHHHHHHHHHHH-HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 230 SKLAGESESNLRKAFEEA-EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a-~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
.. .......+....... ....+.+++|||+|.+... + ....|...++.... .+.+|.++|.+..+.
T Consensus 79 ~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------~----~~~~L~~~le~~~~--~~~~Ilt~n~~~~l~ 145 (316)
T PHA02544 79 CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------D----AQRHLRSFMEAYSK--NCSFIITANNKNGII 145 (316)
T ss_pred cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------H----HHHHHHHHHHhcCC--CceEEEEcCChhhch
Confidence 11 111112222221111 1134689999999877221 1 12344555655433 456777889888999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHH
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIH 338 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 338 (757)
+.+++ |+ ..+.++.|+..++..+++..
T Consensus 146 ~~l~s--R~-~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 146 EPLRS--RC-RVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHh--hc-eEEEeCCCCHHHHHHHHHHH
Confidence 99988 77 46889999999998777643
No 203
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.23 E-value=4.4e-10 Score=114.57 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=114.1
Q ss_pred Ccccc--cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh
Q 004384 156 GYDDV--GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS 230 (757)
Q Consensus 156 ~~~~i--~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~ 230 (757)
+|++. ++.+..++.+++++.. ..+.+++|+||+|||||+++++++... +..++.+++..+..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~ 79 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAG-------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ 79 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence 44444 4566677777766431 345689999999999999999999876 45678888877653
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC--
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID-- 308 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld-- 308 (757)
.. ..++... ....+|+|||++.+..... ....|..+++........+|+.++..+..++
T Consensus 80 ~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~---------~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 80 AD--------PEVLEGL--EQADLVCLDDVEAIAGQPE---------WQEALFHLYNRVREAGGRLLIAGRAAPAQLPLR 140 (226)
T ss_pred hH--------HHHHhhc--ccCCEEEEeChhhhcCChH---------HHHHHHHHHHHHHHcCCeEEEECCCChHHCCcc
Confidence 22 2222222 2345999999998754310 1234444444433323344444444444332
Q ss_pred -HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHH
Q 004384 309 -PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 374 (757)
Q Consensus 309 -~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 374 (757)
+.+.+...+...+.++.|+.+++..+++.......+. ++..++.++.. -+.+.+++..++.++..
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 6666522235789999999999999998765433221 23346777774 44456677777666543
No 204
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.23 E-value=1.4e-10 Score=124.37 Aligned_cols=175 Identities=19% Similarity=0.320 Sum_probs=124.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
..-++||||.|+|||+|++|++++. +..++.+...++...++-....+-..-|++-+ .-.+++||+|+.+.++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 3449999999999999999999875 34577888877776666554444455677666 4469999999999764
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC---ccccCCCccc--eEEEecCCCHHHHHHHHHHh
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID---PALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld---~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 614 (757)
.+...+|...+..+...++.+|+.+...|..+. |.+.+ ||. .++.+.+||.+.|..|++..
T Consensus 191 ------------~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 191 ------------ERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred ------------hhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHH
Confidence 233455555555555555667777777777654 67776 888 56678899999999999998
Q ss_pred hccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 615 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 615 l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
....++.-+.+ +..+|.... -+.+++..++......|....
T Consensus 257 a~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 257 AEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK 298 (408)
T ss_pred HHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC
Confidence 87766554333 455665554 477888877777666665543
No 205
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=4.1e-10 Score=128.58 Aligned_cols=186 Identities=18% Similarity=0.269 Sum_probs=125.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++-+|++|.|.+..++.|+..+... .-+..+||+||+|+||||+|+.+|+.++..
T Consensus 9 KyRP~~f~divGQe~vv~~L~~~l~~~------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 9 KWRPQTFAEVVGQEHVLTALANALDLG------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 456778999999999999888877641 112347999999999999999999988652
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ...-..++.+.+.+. .....|+||||+|.|.. ...+.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 22222211 011233455544432 33456999999998853 234677
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++.++-...|+..+....+. ++..+..++..+.|-
T Consensus 140 LKtLEEPp--~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs- 213 (647)
T PRK07994 140 LKTLEEPP--EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGS- 213 (647)
T ss_pred HHHHHcCC--CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 88887643 366677778888899888887 75 778999999988887777655432222 334467777777664
Q ss_pred hhHHHHHHHH
Q 004384 362 GADLAALCTE 371 (757)
Q Consensus 362 ~~dl~~l~~~ 371 (757)
.++...++..
T Consensus 214 ~R~Al~lldq 223 (647)
T PRK07994 214 MRDALSLTDQ 223 (647)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.22 E-value=1.2e-10 Score=109.33 Aligned_cols=121 Identities=45% Similarity=0.670 Sum_probs=83.4
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHH---HHHHHHHHHhCCCeEEEEecccchhc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEAN---VREIFDKARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~---i~~lf~~a~~~~p~il~iDEid~l~~ 538 (757)
..+++++||||||||++++.++..+ +.+++.+.+.+....+....... ....+.......+.++++||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4569999999999999999999998 78888888877654332221111 12233444555678999999998621
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCCCC----CCeEEEEeeCCCCC--CCCccccCCCccceEEEecC
Q 004384 539 QRGSSVGDAGGAADRVLNQLLTEMDGMSA----KKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 539 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~~----~~~v~vi~tTn~~~--~ld~allrpgRf~~~i~~~~ 601 (757)
.....++..+..... ..++.+|++||... .+++.+.. ||+..+.+++
T Consensus 99 --------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~~ 151 (151)
T cd00009 99 --------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIPL 151 (151)
T ss_pred --------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecCC
Confidence 223344444444332 35788889998877 67777776 9998888764
No 207
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.21 E-value=1.3e-09 Score=120.92 Aligned_cols=201 Identities=23% Similarity=0.291 Sum_probs=123.9
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhh---
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIM--- 229 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~--- 229 (757)
+.+.|-++++++|...+.-.+.. ..+.+++|+||||||||++++.++..+ +..++.++|....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 45889999999988887532211 234579999999999999999999876 4667888875321
Q ss_pred -------hhccc--------hhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCC
Q 004384 230 -------SKLAG--------ESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 293 (757)
Q Consensus 230 -------~~~~g--------~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 293 (757)
....+ .....+..+.+.... ..+.+|+|||+|.+....+ ...+..|+.+++... ..
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~~~-~~ 172 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEEYP-GA 172 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhccC-CC
Confidence 11111 112223333333332 3567999999999973211 123444555554433 23
Q ss_pred eEEEEEecCCCC---CCCHHhhccCCc-ceEEEeCCCCHHHHHHHHHHHhcCC---CCCCchhhhHHhHhcCCCc--hhH
Q 004384 294 HVIVIGATNRPN---SIDPALRRFGRF-DREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIAKDTHGYV--GAD 364 (757)
Q Consensus 294 ~v~vI~atn~~~---~ld~~l~r~~rf-~~~i~i~~p~~~~r~~il~~~~~~~---~l~~~~~l~~la~~t~g~~--~~d 364 (757)
++.+|+++|..+ .+++.+.+ |+ ...+.+++++.++..+|++..++.. ...++..++.+++.+.+.. .+.
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~ 250 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARV 250 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHH
Confidence 677888887653 46777765 44 3578999999999999998776431 1123334666666663322 233
Q ss_pred HHHHHHHHHHHHH
Q 004384 365 LAALCTEAALQCI 377 (757)
Q Consensus 365 l~~l~~~a~~~~~ 377 (757)
+..++..|+..+.
T Consensus 251 a~~ll~~a~~~a~ 263 (394)
T PRK00411 251 AIDLLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 208
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.21 E-value=7.4e-10 Score=120.16 Aligned_cols=180 Identities=24% Similarity=0.336 Sum_probs=115.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEec
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 225 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~-----~~~~~v~~ 225 (757)
+..+.+|+++.|.++.++.+.+++..+ ...+++|+||||||||++|++++.++. ..++.+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~~~-------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVDSP-------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHhCC-------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 456677899999999999988877531 123699999999999999999999874 23567777
Q ss_pred hhhhhhcc-------------ch-------hHHHHHHHHHHHHh-----cCCeEEEEcccccccCCCCCCchHHHHHHHH
Q 004384 226 PEIMSKLA-------------GE-------SESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 280 (757)
Q Consensus 226 ~~l~~~~~-------------g~-------~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 280 (757)
.++..... +. ....++.+.+.... ..+.++++||++.+.+. ...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-----------~~~ 143 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-----------AQQ 143 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-----------HHH
Confidence 66532110 00 11223333333322 22469999999877421 124
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
.|...++..... ..+|.+++.+..+.+.+++ |+ ..+.+.+|+..+...+++..++...+. ++..++.++..+.|
T Consensus 144 ~L~~~le~~~~~--~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g 218 (337)
T PRK12402 144 ALRRIMEQYSRT--CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG 218 (337)
T ss_pred HHHHHHHhccCC--CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 456666654432 3344455556667677776 55 568899999999988888765543322 33457777777643
No 209
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.21 E-value=6.2e-11 Score=126.79 Aligned_cols=175 Identities=28% Similarity=0.434 Sum_probs=120.7
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccc-hh
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAG-ES 236 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~g-~~ 236 (757)
|.|.++.++.+..++...+++..+...+.. ..+.++||+||||||||++|+.||..++.+|+.+++..+.. .|.| +.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 899999999998777543222211111111 13578999999999999999999999999999999877664 4666 33
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 004384 237 ESNLRKAFEEAE-------------------------------------------------------------------- 248 (757)
Q Consensus 237 ~~~l~~vf~~a~-------------------------------------------------------------------- 248 (757)
+..++.+|+.|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 444444444440
Q ss_pred ----------------------------------------------------------------------hcCCeEEEEc
Q 004384 249 ----------------------------------------------------------------------KNAPSIIFID 258 (757)
Q Consensus 249 ----------------------------------------------------------------------~~~p~il~iD 258 (757)
...-.|+|||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 1134699999
Q ss_pred ccccccCCCCCCchHH-HHHHHHHHHHHhhccc--------CCCeEEEEEec----CCCCCCCHHhhccCCcceEEEeCC
Q 004384 259 EIDSIAPKREKTHGEV-ERRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDREIDIGV 325 (757)
Q Consensus 259 Eid~l~~~~~~~~~~~-~~~~~~~Ll~~l~~~~--------~~~~v~vI~at----n~~~~ld~~l~r~~rf~~~i~i~~ 325 (757)
|||.++...+....++ ..-+.+.|+.++++-. ...++++|++- ..|.++-|.|.. ||...+.+..
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~ 334 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDA 334 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCC
Confidence 9999997653222222 2346677888887621 22467777532 345667788875 9999999999
Q ss_pred CCHHHHHHHHH
Q 004384 326 PDEVGRLEVLR 336 (757)
Q Consensus 326 p~~~~r~~il~ 336 (757)
++.++..+||.
T Consensus 335 L~~~dL~~ILt 345 (443)
T PRK05201 335 LTEEDFVRILT 345 (443)
T ss_pred CCHHHHHHHhc
Confidence 99999988883
No 210
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.21 E-value=2.1e-10 Score=128.85 Aligned_cols=166 Identities=23% Similarity=0.399 Sum_probs=108.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 267 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 267 (757)
.+++|+||+|||||+|+++++.++ +..++++++.++...+..........-|.... ..+.+|+|||++.+..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~ 227 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKE 227 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCH
Confidence 569999999999999999999887 45678888887765544332211112222222 246799999999986432
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhcC-
Q 004384 268 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN- 341 (757)
Q Consensus 268 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~---ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~~- 341 (757)
. ....++..++.+......+++++...|.. +++.+++ ||. ..+++..|+.+.|.+|++..+..
T Consensus 228 ~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 228 R---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred H---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 1 12345555555444444566666666654 5678877 664 57899999999999999987754
Q ss_pred -CCCCCchhhhHHhHhcCCCchhHHHHHHHHH
Q 004384 342 -MKLSDDVDLERIAKDTHGYVGADLAALCTEA 372 (757)
Q Consensus 342 -~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a 372 (757)
+.+.+ ..++.++....|- .+.+...+...
T Consensus 297 ~~~l~~-e~l~~ia~~~~~~-~R~l~~~l~~l 326 (450)
T PRK00149 297 GIDLPD-EVLEFIAKNITSN-VRELEGALNRL 326 (450)
T ss_pred CCCCCH-HHHHHHHcCcCCC-HHHHHHHHHHH
Confidence 33443 3478888877653 34444444433
No 211
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=6.2e-10 Score=124.59 Aligned_cols=194 Identities=23% Similarity=0.292 Sum_probs=130.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE---------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF--------- 221 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~--------- 221 (757)
+.++-+|+|+.|.+..++.++..+... ..+..+||+||+||||||+|+++|+.++....
T Consensus 14 kyRP~~f~dliGq~~vv~~L~~ai~~~------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~ 81 (507)
T PRK06645 14 KYRPSNFAELQGQEVLVKVLSYTILND------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKT 81 (507)
T ss_pred hhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCC
Confidence 467778999999999999888766431 22457999999999999999999998864211
Q ss_pred ---EEechhhhhh----------ccchhHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCCchHHHHHHHHHHHH
Q 004384 222 ---CINGPEIMSK----------LAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLT 284 (757)
Q Consensus 222 ---~v~~~~l~~~----------~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ 284 (757)
+-+|..+... ........++.+++.+... ...|++|||+|.+.. ...+.|+.
T Consensus 82 C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~naLLk 150 (507)
T PRK06645 82 CEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAFNALLK 150 (507)
T ss_pred CCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHHHHHHH
Confidence 1111111110 0112234567777666432 346999999998742 22355666
Q ss_pred HhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchh
Q 004384 285 LMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGA 363 (757)
Q Consensus 285 ~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~ 363 (757)
.++.. ...+++|.+|+.++.+.+.+++ |+ ..+++..++..+...+++..++..... ++..+..++..+.| +.+
T Consensus 151 ~LEep--p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR 224 (507)
T PRK06645 151 TLEEP--PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SAR 224 (507)
T ss_pred HHhhc--CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 66653 3356666677778888888887 66 568899999999988888776543332 33457788888776 456
Q ss_pred HHHHHHHHHH
Q 004384 364 DLAALCTEAA 373 (757)
Q Consensus 364 dl~~l~~~a~ 373 (757)
++..++..+.
T Consensus 225 ~al~~Ldkai 234 (507)
T PRK06645 225 DAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 212
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.21 E-value=6.6e-11 Score=119.35 Aligned_cols=169 Identities=21% Similarity=0.381 Sum_probs=108.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhH-HHHHHHHHHHhCCCeEEEEecccchhcc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~-~i~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
..++||||+|+|||+|.++++.+. +...+++++.++...+...... .+..+.+..+ ...+++||+++.+.++
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc
Confidence 348999999999999999999874 4567888888876655432221 2223333333 3369999999998643
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC---CccccCCCccce--EEEecCCCHHHHHHHHHHh
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLDQ--LIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l---d~allrpgRf~~--~i~~~~p~~~~r~~Il~~~ 614 (757)
.+....|...++.+...++.+|+++...|..+ ++.+.. ||.. .+.+.+||.++|.+|++..
T Consensus 113 ------------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~ 178 (219)
T PF00308_consen 113 ------------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKK 178 (219)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHH
Confidence 33445555555555455566777777777755 456655 8774 8889999999999999999
Q ss_pred hccCCCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004384 615 LRKSPVSKDVD-LRALAKYTQGFSGADITEICQRACKY 651 (757)
Q Consensus 615 l~~~~~~~~~d-~~~la~~~~g~sg~di~~~~~~a~~~ 651 (757)
+...++.-+.+ ++.|++... -+.++|..++..-...
T Consensus 179 a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 179 AKERGIELPEEVIEYLARRFR-RDVRELEGALNRLDAY 215 (219)
T ss_dssp HHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHHHHH
Confidence 98877664444 455566554 4778887777654433
No 213
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=6.6e-10 Score=108.11 Aligned_cols=194 Identities=22% Similarity=0.331 Sum_probs=135.3
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGP 499 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~ 499 (757)
...+.+...++.|.+..|+.|.+....... | .|..++||+|.-|||||+|+||+-.+. +...+.|+-.
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAE--------G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHc--------C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 344568899999999999999776543322 2 345679999999999999999998876 4567888777
Q ss_pred cccccccCchhHHHHHHHHHHHhCC-CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--CCCeEEEEee
Q 004384 500 ELLTMWFGESEANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--AKKTVFIIGA 576 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~~~~v~vi~t 576 (757)
++.. +-.+++..+..+ .-|+|+|+.-. + ..+.....|-..|||-. ...+|+|.+|
T Consensus 123 dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF----------e---~gd~~yK~LKs~LeG~ve~rP~NVl~YAT 180 (287)
T COG2607 123 DLAT---------LPDLVELLRARPEKFILFCDDLSF----------E---EGDDAYKALKSALEGGVEGRPANVLFYAT 180 (287)
T ss_pred HHhh---------HHHHHHHHhcCCceEEEEecCCCC----------C---CCchHHHHHHHHhcCCcccCCCeEEEEEe
Confidence 7643 344555444433 35999998643 1 12334566666788753 3468999999
Q ss_pred CCCCCCCCcc--------------------ccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHH----HHHH
Q 004384 577 TNRPDIIDPA--------------------LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLR----ALAK 631 (757)
Q Consensus 577 Tn~~~~ld~a--------------------llrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~----~la~ 631 (757)
+||...|..- +.-..||...+.|+++|.++..+|++.++++.+++-+. .+. +-|.
T Consensus 181 SNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt 260 (287)
T COG2607 181 SNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWAT 260 (287)
T ss_pred cCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9997655421 11124999999999999999999999999998876532 122 2233
Q ss_pred HcCCCCHHHHHHHHHH
Q 004384 632 YTQGFSGADITEICQR 647 (757)
Q Consensus 632 ~~~g~sg~di~~~~~~ 647 (757)
...|-||+--.+.++.
T Consensus 261 ~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 261 TRGGRSGRVAWQFIRD 276 (287)
T ss_pred hcCCCccHhHHHHHHH
Confidence 4466778766665544
No 214
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.7e-10 Score=127.49 Aligned_cols=194 Identities=23% Similarity=0.345 Sum_probs=144.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCce-------EE----
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------IS---- 495 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~-------i~---- 495 (757)
...|+++.|++.+.+.|...+... +...+.||.||.||||||+||.+|+.+++.- ..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C 79 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC 79 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh
Confidence 356899999999999999887642 2345699999999999999999999876431 00
Q ss_pred --Ee-C--ccccc--cccCchhHHHHHHHHHHHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC
Q 004384 496 --VK-G--PELLT--MWFGESEANVREIFDKARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 564 (757)
Q Consensus 496 --v~-~--~~l~~--~~~g~~e~~i~~lf~~a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 564 (757)
+. | .|++- .-...+-..+|.+-+++... .+.|.+|||++.| +....|.||..|+.
T Consensus 80 k~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKTLEE 145 (515)
T COG2812 80 KEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKTLEE 145 (515)
T ss_pred HhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhccccc
Confidence 00 0 11110 00012234577777776543 3679999999997 35678999999986
Q ss_pred CCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHcCCCCHHHHHH
Q 004384 565 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSGADITE 643 (757)
Q Consensus 565 ~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg~di~~ 643 (757)
+...|++|.||..|+.+++.+++ |+. ++.|...+.++....+...+.+..+.-+.+ +..+|+..+| |-+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 44578888999999999998887 775 677888999999999999998887775544 5667777776 7789888
Q ss_pred HHHHHHHHH
Q 004384 644 ICQRACKYA 652 (757)
Q Consensus 644 ~~~~a~~~a 652 (757)
++..|....
T Consensus 220 lLDq~i~~~ 228 (515)
T COG2812 220 LLDQAIAFG 228 (515)
T ss_pred HHHHHHHcc
Confidence 888776664
No 215
>PRK06620 hypothetical protein; Validated
Probab=99.20 E-value=1.5e-10 Score=116.22 Aligned_cols=144 Identities=19% Similarity=0.264 Sum_probs=92.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCC
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVG 545 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~ 545 (757)
..++||||||||||+|+++++...+..++. .... ....+ + ...++++|||+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~---~--~~d~lliDdi~~~--------- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL---E--KYNAFIIEDIENW--------- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH---h--cCCEEEEeccccc---------
Confidence 569999999999999999999877643322 1100 01111 1 2258999999953
Q ss_pred CCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC-ccccCCCccc--eEEEecCCCHHHHHHHHHHhhccCCCCC
Q 004384 546 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID-PALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVSK 622 (757)
Q Consensus 546 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld-~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~~ 622 (757)
....+-.+++. +...++.+||+++..|..+. |++.+ |+. .++.+.+||.+.+..+++...+..++.-
T Consensus 98 -----~~~~lf~l~N~---~~e~g~~ilits~~~p~~l~l~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l 167 (214)
T PRK06620 98 -----QEPALLHIFNI---INEKQKYLLLTSSDKSRNFTLPDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTI 167 (214)
T ss_pred -----hHHHHHHHHHH---HHhcCCEEEEEcCCCccccchHHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 11222233333 33345677888876666431 67766 887 4689999999999999998887655432
Q ss_pred cc-CHHHHHHHcCCCCHHHHHHHHHH
Q 004384 623 DV-DLRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 623 ~~-d~~~la~~~~g~sg~di~~~~~~ 647 (757)
+. -++.|++...+ +.+.+.+++..
T Consensus 168 ~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 168 SRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred CHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 22 25666766653 66676666655
No 216
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.20 E-value=4.7e-10 Score=114.73 Aligned_cols=181 Identities=27% Similarity=0.429 Sum_probs=114.3
Q ss_pred ccCCCCCcccccChHHHHHH---HHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe---EEEE
Q 004384 150 DRLDEVGYDDVGGVRKQMAQ---IRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---FFCI 223 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~---i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---~~~v 223 (757)
+.+++-+++|.+|.++.+.+ |+.+++. ..-..++|+|||||||||||+.|+.....+ |+.+
T Consensus 130 ermRPktL~dyvGQ~hlv~q~gllrs~ieq-------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 130 ERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ-------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred hhcCcchHHHhcchhhhcCcchHHHHHHHc-------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 35666788999999887654 3444433 233469999999999999999999887655 5665
Q ss_pred echhhhhhccchhHHHHHHHHHHHHh-----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEE
Q 004384 224 NGPEIMSKLAGESESNLRKAFEEAEK-----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 298 (757)
Q Consensus 224 ~~~~l~~~~~g~~~~~l~~vf~~a~~-----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI 298 (757)
+... .....++.+|+.+.+ ....||||||||..-..++ ..|+- .-.++.|++|
T Consensus 197 SAt~-------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP----~VE~G~I~lI 254 (554)
T KOG2028|consen 197 SATN-------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLP----HVENGDITLI 254 (554)
T ss_pred eccc-------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccc----eeccCceEEE
Confidence 5422 223467888888765 3468999999998744321 12222 2245678889
Q ss_pred EecC-CC-CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc----------CCCC----CCchhhhHHhHhcCCCch
Q 004384 299 GATN-RP-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK----------NMKL----SDDVDLERIAKDTHGYVG 362 (757)
Q Consensus 299 ~atn-~~-~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~----------~~~l----~~~~~l~~la~~t~g~~~ 362 (757)
|+|. .| -.++.+|.+ |. +.+.+......+-..||..... .++. .++.-++.++..+.|-..
T Consensus 255 GATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 255 GATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred ecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 8764 34 356788877 44 3455666666666666653211 1221 123346778877777555
Q ss_pred hHHHHH
Q 004384 363 ADLAAL 368 (757)
Q Consensus 363 ~dl~~l 368 (757)
.-+..|
T Consensus 332 ~aLN~L 337 (554)
T KOG2028|consen 332 AALNAL 337 (554)
T ss_pred HHHHHH
Confidence 444443
No 217
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.20 E-value=2.8e-10 Score=126.36 Aligned_cols=168 Identities=23% Similarity=0.368 Sum_probs=108.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
..+++|+||+|+|||+|+++++.++ +..++++++.++...+...... .+....+.. ..+.+|+|||++.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhhcC
Confidence 3569999999999999999999886 4667888887765543322111 111122222 2357999999999864
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhc
Q 004384 266 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK 340 (757)
Q Consensus 266 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~---ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~ 340 (757)
+.. ....++..++.+......+|+++...|.. +++.+++ ||. ..+.++.|+.+.|..|++..++
T Consensus 214 ~~~---------~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~ 282 (405)
T TIGR00362 214 KER---------TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAE 282 (405)
T ss_pred CHH---------HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 321 12345555554433444566666656654 4577776 665 5789999999999999998765
Q ss_pred CCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHH
Q 004384 341 NMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 373 (757)
Q Consensus 341 ~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 373 (757)
...+. ++..++.++....+- .+++...+....
T Consensus 283 ~~~~~l~~e~l~~ia~~~~~~-~r~l~~~l~~l~ 315 (405)
T TIGR00362 283 EEGLELPDEVLEFIAKNIRSN-VRELEGALNRLL 315 (405)
T ss_pred HcCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 43332 334578888777653 455555554443
No 218
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.19 E-value=1e-09 Score=110.72 Aligned_cols=165 Identities=22% Similarity=0.422 Sum_probs=101.9
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
..++||||+|+|||+|++++++++ +..++++++.++...+...... .+..+.... ....+|+||+++.+..+
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc
Confidence 469999999999999999998874 4567888887776544332211 112222222 24569999999998643
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--
Q 004384 267 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN-- 341 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l---d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-- 341 (757)
......|..+++.+...++.+|+++...|..+ ++.+++.......+.+..|+.+.|.+|++..+..
T Consensus 113 ---------~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 113 ---------QRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp ---------HHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ---------hHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 23446677777777666666777766666654 6777773233468899999999999999876543
Q ss_pred CCCCCchhhhHHhHhcCCCchhHHHHHHH
Q 004384 342 MKLSDDVDLERIAKDTHGYVGADLAALCT 370 (757)
Q Consensus 342 ~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 370 (757)
+.+.++ -++.++....+ ..+.+..++.
T Consensus 184 ~~l~~~-v~~~l~~~~~~-~~r~L~~~l~ 210 (219)
T PF00308_consen 184 IELPEE-VIEYLARRFRR-DVRELEGALN 210 (219)
T ss_dssp --S-HH-HHHHHHHHTTS-SHHHHHHHHH
T ss_pred CCCcHH-HHHHHHHhhcC-CHHHHHHHHH
Confidence 444433 36777776644 3344444443
No 219
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.4e-10 Score=123.44 Aligned_cols=188 Identities=23% Similarity=0.270 Sum_probs=128.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 218 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~------------ 218 (757)
+.++.+|+|+.|.+..++.++.++... ..+..+||+||+|+||||+|+.+|..++.
T Consensus 6 KyRP~~f~dliGQe~vv~~L~~a~~~~------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLN------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 456788999999999999888776541 22457999999999999999999987632
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 219 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 219 ------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
.++.+++.+- ..-..++.+++.+.. ....+++|||+|.+.. ...+.|
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaL 136 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNAL 136 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHH
Confidence 2344443211 123456666665543 3346999999998742 134567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+.+|.+|+.+..+.+.+++ |+ ..+++..++..+....+...+..... .++..+..+++.+.| +
T Consensus 137 LK~LEePp--~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-s 210 (491)
T PRK14964 137 LKTLEEPA--PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-S 210 (491)
T ss_pred HHHHhCCC--CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 356666677778888888887 66 55888889988888887766544332 233457778888865 4
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
.+++..++..+.
T Consensus 211 lR~alslLdqli 222 (491)
T PRK14964 211 MRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 220
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.3e-10 Score=132.05 Aligned_cols=183 Identities=20% Similarity=0.295 Sum_probs=122.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------- 492 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-------------- 492 (757)
..+|++++|++.+++.|...+... ..+..+||+||+|+|||++|+++|..+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~ 79 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEM 79 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHH
Confidence 457999999999999998776531 123458999999999999999999887431
Q ss_pred -----------eEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHH
Q 004384 493 -----------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 557 (757)
Q Consensus 493 -----------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 557 (757)
++.+++.. ...-..++.+.+.+.. ....|+||||+|.+. ...++.
T Consensus 80 c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~na 139 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNA 139 (585)
T ss_pred HHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHH
Confidence 12222111 0112344555443332 234699999999873 345778
Q ss_pred HHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCC
Q 004384 558 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGF 636 (757)
Q Consensus 558 ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~ 636 (757)
||..|+... ..+++|.+|+.++.+.+.+.+ |+. .+.|+.++..+...+++..+.+.++.-+ ..+..+++.+.|
T Consensus 140 LLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G- 213 (585)
T PRK14950 140 LLKTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG- 213 (585)
T ss_pred HHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 888888754 345555566667777777766 775 7899999999999999888877654322 225566666654
Q ss_pred CHHHHHHHHHH
Q 004384 637 SGADITEICQR 647 (757)
Q Consensus 637 sg~di~~~~~~ 647 (757)
+.+++.+.+..
T Consensus 214 dlr~al~~Lek 224 (585)
T PRK14950 214 SMRDAENLLQQ 224 (585)
T ss_pred CHHHHHHHHHH
Confidence 66665555544
No 221
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.19 E-value=2.1e-10 Score=121.98 Aligned_cols=161 Identities=24% Similarity=0.369 Sum_probs=105.8
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC-------CceEEE-e
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISV-K 497 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~-------~~~i~v-~ 497 (757)
+...|++|+|++++|..|......| ...|+||.||+|||||++|++++..+. .+|... .
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 4578999999999999987765543 125799999999999999999988753 122200 0
Q ss_pred Ccccc-----c---------------cc----cCchhHH------HHHHHHHHH---------hCCCeEEEEecccchhc
Q 004384 498 GPELL-----T---------------MW----FGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIAT 538 (757)
Q Consensus 498 ~~~l~-----~---------------~~----~g~~e~~------i~~lf~~a~---------~~~p~il~iDEid~l~~ 538 (757)
.+++. . .+ .|.++.. +...|.... ...-.+||+|||+.+.
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~- 157 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD- 157 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCC-
Confidence 00000 0 00 1112211 111111110 1112599999999973
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCC---------C--CCCeEEEEeeCCCCC-CCCccccCCCccceEEEecCCC-HH
Q 004384 539 QRGSSVGDAGGAADRVLNQLLTEMDGM---------S--AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPD-ED 605 (757)
Q Consensus 539 ~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~--~~~~v~vi~tTn~~~-~ld~allrpgRf~~~i~~~~p~-~~ 605 (757)
..+.+.|+..|+.. . ...++++|+|.|..+ .+.++++. ||...+.+..|+ .+
T Consensus 158 -------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~ 222 (350)
T CHL00081 158 -------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPE 222 (350)
T ss_pred -------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChH
Confidence 45566677766431 1 134688888888765 68899998 999999999997 69
Q ss_pred HHHHHHHHhh
Q 004384 606 SRHQIFKACL 615 (757)
Q Consensus 606 ~r~~Il~~~l 615 (757)
.+.+|++...
T Consensus 223 ~e~~il~~~~ 232 (350)
T CHL00081 223 LRVKIVEQRT 232 (350)
T ss_pred HHHHHHHhhh
Confidence 9999998864
No 222
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=4.7e-10 Score=126.43 Aligned_cols=188 Identities=17% Similarity=0.232 Sum_probs=124.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++-+|+||.|.+..++.|+..+... ..+..+||+||+|+||||+|+++|+.++..
T Consensus 9 kyRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 76 (509)
T PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC 76 (509)
T ss_pred HHCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC
Confidence 567778999999999999998887542 113358999999999999999999988642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+... ..+.|
T Consensus 77 ~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-----------a~naL 139 (509)
T PRK14958 77 ENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-----------SFNAL 139 (509)
T ss_pred HHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-----------HHHHH
Confidence 33333321 112233555555432 234469999999988532 24567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++.... .+.+|.+|+++..+.+.+++ |+ ..+++..++..+-...++..++...+. ++..+..++..+.| +
T Consensus 140 Lk~LEepp~--~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-s 213 (509)
T PRK14958 140 LKTLEEPPS--HVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-S 213 (509)
T ss_pred HHHHhccCC--CeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 777776433 56666677788888877877 55 456777777776666655554433222 33346777777765 4
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
.+++..++..+.
T Consensus 214 lR~al~lLdq~i 225 (509)
T PRK14958 214 VRDALSLLDQSI 225 (509)
T ss_pred HHHHHHHHHHHH
Confidence 566666665543
No 223
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=6.1e-10 Score=126.52 Aligned_cols=188 Identities=19% Similarity=0.259 Sum_probs=126.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 220 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~---------- 220 (757)
+.++-+|+||+|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.++...
T Consensus 9 KYRP~tFddIIGQe~vv~~L~~ai~~~------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C 76 (709)
T PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEG------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVC 76 (709)
T ss_pred HhCCCCHHHHcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCccc
Confidence 567788999999999999998887641 2245699999999999999999999875421
Q ss_pred --------------EEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 221 --------------FCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 221 --------------~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
+.+++. .......++.++..+. .....|+||||+|.+.. ...+.|
T Consensus 77 ~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NAL 139 (709)
T PRK08691 77 QSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAM 139 (709)
T ss_pred HHHHHHhccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHH
Confidence 112111 1112345666665542 23447999999987632 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..|+... ..+.+|.+|+.+..+.+.+++ |+ ..+.+..++..+-...|+..++...+. ++..+..|++...| +
T Consensus 140 LKtLEEPp--~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-s 213 (709)
T PRK08691 140 LKTLEEPP--EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-S 213 (709)
T ss_pred HHHHHhCC--CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-C
Confidence 77777643 356667777888888888775 66 557788888888877777665543332 33347777777754 4
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
.+++..++..+.
T Consensus 214 lRdAlnLLDqai 225 (709)
T PRK08691 214 MRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHH
Confidence 556666665544
No 224
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-09 Score=123.10 Aligned_cols=176 Identities=21% Similarity=0.282 Sum_probs=118.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
++++..|+||.|.++.++.|+.++... ..+..+||+|||||||||+|+++|..+...
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~~------------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQG------------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 567889999999999999998887641 123347999999999999999999987521
Q ss_pred ------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHH
Q 004384 220 ------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 283 (757)
Q Consensus 220 ------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll 283 (757)
++.+++.. ......++.+.+.+. ...+.++||||+|.+. ....+.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-----------~~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-----------KSAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC-----------HHHHHHHH
Confidence 23333321 111233455433332 2346799999998663 12345566
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCC
Q 004384 284 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 360 (757)
Q Consensus 284 ~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 360 (757)
..++... ..+++|.+++.+..+.+.+++ |+ ..+.+..|+..+-...++..++...+. ++..+..++..+.|-
T Consensus 138 k~LEep~--~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~Gd 210 (504)
T PRK14963 138 KTLEEPP--EHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGA 210 (504)
T ss_pred HHHHhCC--CCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 6666532 356666677888889888887 65 468999999999888887665443332 333477777777663
No 225
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.17 E-value=2.3e-10 Score=121.90 Aligned_cols=156 Identities=22% Similarity=0.317 Sum_probs=101.4
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-------CCceE-------
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-------QANFI------- 494 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-------~~~~i------- 494 (757)
.|..|.|++++|..|.-.+..| ...+++|.|+||+||||+++++++.+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 4778999999998875543322 13569999999999999999999876 22221
Q ss_pred ------EE--eC-------------ccccc-----cccCch--hHHH--------HHHHHHHHhCCCeEEEEecccchhc
Q 004384 495 ------SV--KG-------------PELLT-----MWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 495 ------~v--~~-------------~~l~~-----~~~g~~--e~~i--------~~lf~~a~~~~p~il~iDEid~l~~ 538 (757)
.. .. .++-. ..+|.. ++.+ ..++..|. ..++|+|||+.+.
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~---~GvL~lDEi~~L~- 144 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARAN---RGILYIDEVNLLE- 144 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceecc---CCEEEecChHhCC-
Confidence 00 00 01110 112211 0000 01222222 2599999999863
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeEEEEeeCCCCC-CCCccccCCCccceEEEecCCCH-H
Q 004384 539 QRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLPDE-D 605 (757)
Q Consensus 539 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~tTn~~~-~ld~allrpgRf~~~i~~~~p~~-~ 605 (757)
..+.+.|+..|+.-. ...++++++|+|..+ .+.++++. ||...+.++.|+. +
T Consensus 145 -------------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~e 209 (337)
T TIGR02030 145 -------------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHH
Confidence 456667777765321 124688899988765 68899998 9999999999875 8
Q ss_pred HHHHHHHHhhc
Q 004384 606 SRHQIFKACLR 616 (757)
Q Consensus 606 ~r~~Il~~~l~ 616 (757)
+|.+|++....
T Consensus 210 er~eIL~~~~~ 220 (337)
T TIGR02030 210 LRVEIVERRTE 220 (337)
T ss_pred HHHHHHHhhhh
Confidence 99999988543
No 226
>PRK06893 DNA replication initiation factor; Validated
Probab=99.17 E-value=5.4e-10 Score=113.77 Aligned_cols=148 Identities=16% Similarity=0.252 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 269 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 269 (757)
..++|+||||||||+|++++|+++ +....++..... ......+++.. ....+|+|||++.+..+..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~~~~~~~~--~~~dlLilDDi~~~~~~~~- 108 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFSPAVLENL--EQQDLVCLDDLQAVIGNEE- 108 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhhHHHHhhc--ccCCEEEEeChhhhcCChH-
Confidence 458999999999999999999886 223334443211 01111233332 2347999999998864321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCe-EEEEEecCCCCCCC---HHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--CCC
Q 004384 270 THGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNSID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMK 343 (757)
Q Consensus 270 ~~~~~~~~~~~~Ll~~l~~~~~~~~-v~vI~atn~~~~ld---~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~ 343 (757)
....|+++++....... +++++++..|..++ +.+++..++...+.++.|+.++|.++++..+. ++.
T Consensus 109 --------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~ 180 (229)
T PRK06893 109 --------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE 180 (229)
T ss_pred --------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 12345666665544333 45566666676654 78888556667889999999999999986653 444
Q ss_pred CCCchhhhHHhHhcCCC
Q 004384 344 LSDDVDLERIAKDTHGY 360 (757)
Q Consensus 344 l~~~~~l~~la~~t~g~ 360 (757)
+.++ .+.+++.+..|-
T Consensus 181 l~~~-v~~~L~~~~~~d 196 (229)
T PRK06893 181 LSDE-VANFLLKRLDRD 196 (229)
T ss_pred CCHH-HHHHHHHhccCC
Confidence 4444 478888877653
No 227
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.17 E-value=1e-10 Score=126.06 Aligned_cols=132 Identities=28% Similarity=0.431 Sum_probs=93.1
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc--ccCchhHH------------HHHHHHHHHhCCCeEEEE
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--WFGESEAN------------VREIFDKARQSAPCVLFF 530 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~--~~g~~e~~------------i~~lf~~a~~~~p~il~i 530 (757)
.+++||.||||||||++|+++|..++.+|+.+.+..-+.. -+|...-. -+.+|...+ +++|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 4669999999999999999999999999999987643221 11211111 112222222 49999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcC----------CCCCCeEEEEeeCC-----CCCCCCccccCCCccce
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG----------MSAKKTVFIIGATN-----RPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~----------~~~~~~v~vi~tTn-----~~~~ld~allrpgRf~~ 595 (757)
|||+.. ...+.+.||..|+. +.-...++||+|+| .-..+.+|+++ ||..
T Consensus 119 DEInra--------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~ 182 (329)
T COG0714 119 DEINRA--------------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLL 182 (329)
T ss_pred eccccC--------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEE
Confidence 999883 36677888888775 22346788999999 44578899999 9999
Q ss_pred EEEecCC-CHHHHHHHHHHhhc
Q 004384 596 LIYIPLP-DEDSRHQIFKACLR 616 (757)
Q Consensus 596 ~i~~~~p-~~~~r~~Il~~~l~ 616 (757)
.++++.| +.++...++.....
T Consensus 183 ~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 183 RIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred EEecCCCCchHHHHHHHHhCcc
Confidence 9999999 55555555554443
No 228
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=7.4e-10 Score=127.48 Aligned_cols=184 Identities=19% Similarity=0.302 Sum_probs=129.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC---------------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------------- 491 (757)
..+|++++|++.+++.|...+... ..+..+|||||+|+|||++|+++|..+.+
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~s 80 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECES 80 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchH
Confidence 357999999999999998876531 23456899999999999999999998642
Q ss_pred ----------ceEEEeCccccccccCchhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHH
Q 004384 492 ----------NFISVKGPELLTMWFGESEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQ 557 (757)
Q Consensus 492 ----------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ 557 (757)
+++.+++.+- .+...++.+...+...+ ..|++|||+|.+. ....+.
T Consensus 81 C~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~na 140 (614)
T PRK14971 81 CVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNA 140 (614)
T ss_pred HHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHH
Confidence 2333333211 12345667666654332 4699999999872 345788
Q ss_pred HHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCCC
Q 004384 558 LLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGF 636 (757)
Q Consensus 558 ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~ 636 (757)
||..|+.... ..++|++|+.+..|-+++.+ |+. .+.|.+++.++....++..+++.++.-+. .+..|++.+.|
T Consensus 141 LLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g- 214 (614)
T PRK14971 141 FLKTLEEPPS--YAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG- 214 (614)
T ss_pred HHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 9999887443 44555566666788888887 875 79999999999999999888777665333 36677777654
Q ss_pred CHHHHHHHHHHH
Q 004384 637 SGADITEICQRA 648 (757)
Q Consensus 637 sg~di~~~~~~a 648 (757)
+-+++.+.+...
T Consensus 215 dlr~al~~Lekl 226 (614)
T PRK14971 215 GMRDALSIFDQV 226 (614)
T ss_pred CHHHHHHHHHHH
Confidence 556665555443
No 229
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=3.8e-10 Score=125.58 Aligned_cols=167 Identities=19% Similarity=0.313 Sum_probs=106.1
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
.+++||||+|||||+|+++++..+ +..++++++.++...+..... ..+.. |.......+.+|+|||++.+...
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~ 209 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGK 209 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCc
Confidence 469999999999999999999875 346788888776554432211 11112 22222235789999999988643
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--C
Q 004384 267 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--N 341 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l---d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~ 341 (757)
.. ....++..++.+......+|+++.+.|..+ .+.+++.......+.+..|+.+.|.+|++..+. +
T Consensus 210 ~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 210 TG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred HH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 21 113345555544444455666666677654 455665222345788999999999999998765 3
Q ss_pred CCCCCchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 342 MKLSDDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 342 ~~l~~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
+.+.++ .+..++....+- .+.+...+..
T Consensus 281 ~~l~~e-v~~~Ia~~~~~~-~R~L~g~l~~ 308 (440)
T PRK14088 281 GELPEE-VLNFVAENVDDN-LRRLRGAIIK 308 (440)
T ss_pred CCCCHH-HHHHHHhccccC-HHHHHHHHHH
Confidence 444443 478888877663 3444444443
No 230
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=1.1e-09 Score=129.06 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=121.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
++++.+|++|.|.+..++.|+.++... ..+..+||+||+||||||+++.||+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~~------------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDSG------------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 567789999999999999988887641 112348999999999999999999998641
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEcccccccCCCCCCchHHHHHHHH
Q 004384 220 ---------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 280 (757)
Q Consensus 220 ---------------~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 280 (757)
++.+++... ..-..++.+.+. .......|+||||+|.|.. ...+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 122222110 012233443332 2334557999999998853 2346
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
.|++.|+.... .+++|.+|+.++.|-+.+++ |. ..+.|..+..++..++|...++...+. ++..+..++....|
T Consensus 139 aLLK~LEEpP~--~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG 213 (824)
T PRK07764 139 ALLKIVEEPPE--HLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG 213 (824)
T ss_pred HHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78888877543 56666677777888888887 55 568888888888877777665443332 23345666666665
Q ss_pred CchhHHHHHHH
Q 004384 360 YVGADLAALCT 370 (757)
Q Consensus 360 ~~~~dl~~l~~ 370 (757)
...++..++.
T Consensus 214 -dlR~Al~eLE 223 (824)
T PRK07764 214 -SVRDSLSVLD 223 (824)
T ss_pred -CHHHHHHHHH
Confidence 3344444443
No 231
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.16 E-value=9.5e-10 Score=125.24 Aligned_cols=180 Identities=21% Similarity=0.306 Sum_probs=114.6
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----------CeEEEEechh
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----------AFFFCINGPE 227 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~----------~~~~~v~~~~ 227 (757)
+.|.|-++++++|..++.-.+.. -.++..++|+|+||||||++++.+..++. ..++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkg--------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQ--------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhc--------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 56888888888888877643321 12333457999999999999999987651 4568899854
Q ss_pred hhhh----------c------cc-hhHHHHHHHHHHHHh--cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 228 IMSK----------L------AG-ESESNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 228 l~~~----------~------~g-~~~~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
+... . .+ .....+..+|..... ....||+|||||.|.... +.++-.|+.+..
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~--------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT--------QKVLFTLFDWPT- 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH--------HHHHHHHHHHhh-
Confidence 3211 1 01 122345556655422 335699999999997642 123333333332
Q ss_pred ccCCCeEEEEEecCCC---CCCCHHhhccCCcc-eEEEeCCCCHHHHHHHHHHHhcCCC-CCCchhhhHHhHhc
Q 004384 289 LKSRAHVIVIGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKNMK-LSDDVDLERIAKDT 357 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~---~~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~~~-l~~~~~l~~la~~t 357 (757)
.....++|||++|.. +.+++.+++ ||. .++.|++++.++..+||+..+.... +.++..++.+|+..
T Consensus 898 -~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkV 968 (1164)
T PTZ00112 898 -KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKV 968 (1164)
T ss_pred -ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 134578999999863 456777776 443 3478899999999999998766432 22333456666533
No 232
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1e-10 Score=117.93 Aligned_cols=135 Identities=24% Similarity=0.361 Sum_probs=93.2
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhh-hhcccCC-CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-ccccC
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKF-EKFGMSP-SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFG 507 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~-~~~~~~~-~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g 507 (757)
+.++|++..|+.|.-++-..+++.... .+-.+.. ..++||.||+|||||.||+.||+.++.||-.-++..|. ..|+|
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 347888888887765543222111000 0001222 34599999999999999999999999999888887765 47999
Q ss_pred chhHH-HHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004384 508 ESEAN-VREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 565 (757)
Q Consensus 508 ~~e~~-i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~ 565 (757)
+.-.+ +-.+.+.|. +....|++|||||.++.+....+...+-.+.-+...||..++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 87554 455665442 22236999999999998765544444445678899999999984
No 233
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.15 E-value=6.4e-10 Score=125.20 Aligned_cols=167 Identities=18% Similarity=0.296 Sum_probs=108.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 267 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 267 (757)
..++|||++|||||+|+++++..+ +..++++++.++...+...........|..-. ..+++|+||||+++..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH
Confidence 359999999999999999999876 45678888887776554332222222333222 346799999999987542
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC---CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--C
Q 004384 268 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--M 342 (757)
Q Consensus 268 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~---~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~ 342 (757)
. ....|+++++.+.....-+||.+...|. .+++.|++.......+.+..|+.+.|.+||+.++.. +
T Consensus 394 ~---------tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l 464 (617)
T PRK14086 394 S---------TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL 464 (617)
T ss_pred H---------HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 1 1234556666554444445554444443 467888883334567799999999999999987654 3
Q ss_pred CCCCchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 343 KLSDDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 343 ~l~~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
.+.+ ..+++|+.+..+- .+.|..++..
T Consensus 465 ~l~~-eVi~yLa~r~~rn-vR~LegaL~r 491 (617)
T PRK14086 465 NAPP-EVLEFIASRISRN-IRELEGALIR 491 (617)
T ss_pred CCCH-HHHHHHHHhccCC-HHHHHHHHHH
Confidence 3433 3478888776553 3444444443
No 234
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.9e-09 Score=122.49 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=121.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
++++-+|++|.|.+..++.|+.++... ..+..+||+||+||||||+|+++|+.++..
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~~~------------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALDAG------------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 467778999999999999998887641 122347999999999999999999987631
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHHHHHHHH
Q 004384 220 ---------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 280 (757)
Q Consensus 220 ---------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 280 (757)
++.+++... ..-..++.+.+.+ ......|++|||+|.+... ..+
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-----------A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-----------GFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-----------HHH
Confidence 122222110 0123344443333 2234469999999988432 346
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
.|+..|+... ..+++|.+|+.++.+.+.+++ |. ..+.|..++..+-.+.+...++..... ++..+..++....|
T Consensus 137 ALLK~LEEpp--~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 137 ALLKIVEEPP--EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG 211 (584)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777643 366777777888888888887 64 678888888888777777665543322 23345556555544
Q ss_pred CchhHHHHHHHHH
Q 004384 360 YVGADLAALCTEA 372 (757)
Q Consensus 360 ~~~~dl~~l~~~a 372 (757)
..+++..++...
T Consensus 212 -dlR~aln~Ldql 223 (584)
T PRK14952 212 -SPRDTLSVLDQL 223 (584)
T ss_pred -CHHHHHHHHHHH
Confidence 444555555443
No 235
>PHA02244 ATPase-like protein
Probab=99.14 E-value=7.1e-10 Score=117.08 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=79.1
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCc----cccccccCchhHHH-HHHHHHHHhCCCeEEEEecccchhcc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP----ELLTMWFGESEANV-REIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~----~l~~~~~g~~e~~i-~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
...++|+||||||||++|+++|..++.+|+.++.- ++.+ ++....... ..++...+ ...++++||++.+.+
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh--cCCEEEEeCcCcCCH-
Confidence 34599999999999999999999999999998742 1111 111111111 12222222 246999999998632
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcC---------CCCCCeEEEEeeCCCC-----------CCCCccccCCCccceEEEe
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDG---------MSAKKTVFIIGATNRP-----------DIIDPALLRPGRLDQLIYI 599 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~---------~~~~~~v~vi~tTn~~-----------~~ld~allrpgRf~~~i~~ 599 (757)
.+...|...++. .....++-+|+|+|.+ ..+++|++. ||- .|+|
T Consensus 195 -------------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~ 258 (383)
T PHA02244 195 -------------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEF 258 (383)
T ss_pred -------------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeC
Confidence 233333333331 1123578899999973 577899998 996 7999
Q ss_pred cCCCH
Q 004384 600 PLPDE 604 (757)
Q Consensus 600 ~~p~~ 604 (757)
..|+.
T Consensus 259 dyp~~ 263 (383)
T PHA02244 259 DYDEK 263 (383)
T ss_pred CCCcH
Confidence 99984
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.13 E-value=3.4e-09 Score=108.29 Aligned_cols=147 Identities=18% Similarity=0.235 Sum_probs=92.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKRE 268 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~---~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~ 268 (757)
..+++|+||+|||||+|+++++..+. ..+.+++...... ....+++.... ..+++|||++.+..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~~~--~dlliiDdi~~~~~~~- 113 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGMEQ--LSLVCIDNIECIAGDE- 113 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHhhh--CCEEEEeChhhhcCCH-
Confidence 35799999999999999999998754 3344444433211 11122222222 2589999999875431
Q ss_pred CCchHHHHHHHHHHHHHhhcccCCCe-EEEEEecCCCCC---CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhc--
Q 004384 269 KTHGEVERRIVSQLLTLMDGLKSRAH-VIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK-- 340 (757)
Q Consensus 269 ~~~~~~~~~~~~~Ll~~l~~~~~~~~-v~vI~atn~~~~---ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~-- 340 (757)
.....|.++++.....++ -+++.+++.|.. +.|.+++ |+. ..+.+..|+.+++.++++....
T Consensus 114 --------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~ 183 (235)
T PRK08084 114 --------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLR 183 (235)
T ss_pred --------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHc
Confidence 112334555554433333 344445555555 5788988 554 7889999999999999987443
Q ss_pred CCCCCCchhhhHHhHhcCCC
Q 004384 341 NMKLSDDVDLERIAKDTHGY 360 (757)
Q Consensus 341 ~~~l~~~~~l~~la~~t~g~ 360 (757)
++.+.++ -+++++.+..+-
T Consensus 184 ~~~l~~~-v~~~L~~~~~~d 202 (235)
T PRK08084 184 GFELPED-VGRFLLKRLDRE 202 (235)
T ss_pred CCCCCHH-HHHHHHHhhcCC
Confidence 3444444 478888877664
No 237
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=1.1e-09 Score=102.70 Aligned_cols=121 Identities=48% Similarity=0.752 Sum_probs=78.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHH---HHHHHHHHHhcCCeEEEEccccccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESN---LRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~~---l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
.+.+++|+||||||||++++.++..+ +..++.+++.+............ ....+.......+.++++||++.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~ 97 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh
Confidence 45689999999999999999999998 77888888776544322211111 1122333444567899999998772
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccC----CCeEEEEEecCCCC--CCCHHhhccCCcceEEEeC
Q 004384 265 PKREKTHGEVERRIVSQLLTLMDGLKS----RAHVIVIGATNRPN--SIDPALRRFGRFDREIDIG 324 (757)
Q Consensus 265 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~v~vI~atn~~~--~ld~~l~r~~rf~~~i~i~ 324 (757)
. .....+...+..... ...+.+|++++... .+++.+.. |++..+.++
T Consensus 98 ~-----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 R-----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred H-----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 1 112334444444332 35678888888766 56677765 777666654
No 238
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=1.2e-09 Score=123.71 Aligned_cols=176 Identities=20% Similarity=0.236 Sum_probs=118.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++.+|++|.|.+..++.|+.++... .-...+||+||+||||||+|+.+|+.+...
T Consensus 9 KyRP~sf~dIiGQe~v~~~L~~ai~~~------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 9 RYRPQTFAEVAGQETVKAILSRAAQEN------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 467788999999999999888887641 113469999999999999999999988642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++..- ..-..++.+.+. .......|+||||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naL 139 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNAL 139 (624)
T ss_pred HHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHH
Confidence 233332110 011223333222 2234457999999998842 224667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCC
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 360 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 360 (757)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+.+..++..+-..+|+..+....+ .++..+..++..+.|-
T Consensus 140 Lk~LEEP~--~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~Gd 213 (624)
T PRK14959 140 LKTLEEPP--ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGS 213 (624)
T ss_pred HHHhhccC--CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 77776533 356777788888888888776 65 46789999998888888765544332 2333467777777654
No 239
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.6e-09 Score=120.39 Aligned_cols=187 Identities=19% Similarity=0.262 Sum_probs=121.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 218 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~------------ 218 (757)
+.++.+|+++.|.+..++.+...+... ..+..+||+||+|+||||+|+.+|..+..
T Consensus 9 KyRP~~f~diiGq~~~v~~L~~~i~~~------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (546)
T PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQ------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKC 76 (546)
T ss_pred HHCcCcHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 456788999999999999888777541 12335899999999999999999998753
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 219 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 219 ------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
.++.+++.. .. ....++.+++.+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~sC~~i~~~~~~dlieidaas----~~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naL 139 (546)
T PRK14957 77 ENCVAINNNSFIDLIEIDAAS----RT--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNAL 139 (546)
T ss_pred HHHHHHhcCCCCceEEeeccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHH
Confidence 122222211 01 1123444544433 23456999999988742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+.+|.+|+++..+.+.+++ |. ..+++..++.++-...+...++...+. ++..+..++..+.| .
T Consensus 140 LK~LEepp--~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-d 213 (546)
T PRK14957 140 LKTLEEPP--EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-S 213 (546)
T ss_pred HHHHhcCC--CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777643 355666667777888877776 66 678999999888777776654433322 33346777777754 3
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
.+++..++..+
T Consensus 214 lR~alnlLek~ 224 (546)
T PRK14957 214 LRDALSLLDQA 224 (546)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 240
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.12 E-value=1.3e-09 Score=118.55 Aligned_cols=217 Identities=27% Similarity=0.349 Sum_probs=130.5
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhh----hCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hcc
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKS----IGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLA 233 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~----l~i-~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~ 233 (757)
|.|.++.++.+...+...++.-..... -++ ....++||+||||||||++|+++|..++.+|..+++..+.. .|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 799999999887666321111100000 011 12457999999999999999999999999999888876642 466
Q ss_pred chh-HHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhcccC-----------CCe
Q 004384 234 GES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKS-----------RAH 294 (757)
Q Consensus 234 g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~~-----------~~~ 294 (757)
|.. +..+...++.+ ....+++|||||+|.+.+....+. +.....+.+.|+..|++... ..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 34444444422 234678999999999987543221 11112456677777765321 124
Q ss_pred EEEEEecCCCC--------------------------C------------------------CCHHhhccCCcceEEEeC
Q 004384 295 VIVIGATNRPN--------------------------S------------------------IDPALRRFGRFDREIDIG 324 (757)
Q Consensus 295 v~vI~atn~~~--------------------------~------------------------ld~~l~r~~rf~~~i~i~ 324 (757)
.++|.|+|-.. . +.|++ .+|++..+.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf--lgRld~Iv~f~ 316 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF--IGRLPVIATLE 316 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH--hCCCCeEeecC
Confidence 56666666410 0 11222 25888888888
Q ss_pred CCCHHHHHHHHHHH----hc---------CCCCC-CchhhhHHhHh--cCCCchhHHHHHHHHHHHHHHH
Q 004384 325 VPDEVGRLEVLRIH----TK---------NMKLS-DDVDLERIAKD--THGYVGADLAALCTEAALQCIR 378 (757)
Q Consensus 325 ~p~~~~r~~il~~~----~~---------~~~l~-~~~~l~~la~~--t~g~~~~dl~~l~~~a~~~~~~ 378 (757)
+.+.+...+|+... .+ ++.+. ++.-++++++. ...|..+.+..++.......+.
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 88888888887542 11 11111 22335666665 3456667777777666554443
No 241
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.12 E-value=5.8e-09 Score=122.49 Aligned_cols=134 Identities=22% Similarity=0.264 Sum_probs=88.3
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc------cccc-----CchhHHHHHHHHHHHhCCCeEEEEe
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------TMWF-----GESEANVREIFDKARQSAPCVLFFD 531 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~------~~~~-----g~~e~~i~~lf~~a~~~~p~il~iD 531 (757)
+..+++||.|.||+|||+|..++|++.|...++++.++.. +.++ |+..-. ..-|-.|-+.. .-+++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~-dapfL~amr~G-~WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWM-DAPFLHAMRDG-GWVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEec-ccHHHHHhhcC-CEEEee
Confidence 4567799999999999999999999999999999877542 2221 111111 11222232222 367889
Q ss_pred cccchhcccCCCCCCCCcchHHHHHHHHHhhcCC------------CCCCeEEEEeeCCCC------CCCCccccCCCcc
Q 004384 532 ELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM------------SAKKTVFIIGATNRP------DIIDPALLRPGRL 593 (757)
Q Consensus 532 Eid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~------------~~~~~v~vi~tTn~~------~~ld~allrpgRf 593 (757)
|+.- ++..++.-|-..||.- .-..+..|+||-|+- ..|+..++. ||
T Consensus 1619 EiNL--------------aSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RF 1682 (4600)
T COG5271 1619 EINL--------------ASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RF 1682 (4600)
T ss_pred hhhh--------------hHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hh
Confidence 9865 2344444444444421 123467788998874 378888998 99
Q ss_pred ceEEEecCCCHHHHHHHHHHhh
Q 004384 594 DQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 594 ~~~i~~~~p~~~~r~~Il~~~l 615 (757)
. ++++...+.+....|.....
T Consensus 1683 s-vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1683 S-VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred h-eEEecccccchHHHHHHhhC
Confidence 8 78888888777777776655
No 242
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=4.9e-10 Score=128.31 Aligned_cols=171 Identities=21% Similarity=0.326 Sum_probs=123.3
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
...+-++|-++-..++.+.+.. +...+-+|+|+||+|||.++..+|... +...+.++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R-------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR-------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc-------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec
Confidence 4456666766655555554432 233457899999999999999999864 34566777
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
...+. .+|-|+.|..++.+.+...+..+.|+|||||+.+.+.-+... + .-..-|-|.-.| .+..+-+||
T Consensus 234 ~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G----~-a~DAaNiLKPaL----ARGeL~~IG 304 (786)
T COG0542 234 LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG----G-AMDAANLLKPAL----ARGELRCIG 304 (786)
T ss_pred HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc----c-ccchhhhhHHHH----hcCCeEEEE
Confidence 66664 579999999999999999999899999999999998643221 1 111222222222 344567888
Q ss_pred eCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc
Q 004384 576 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD 623 (757)
Q Consensus 576 tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~ 623 (757)
||..-+ .-|+||-| ||. .|++..|+.++-..||+-.-.++...+.
T Consensus 305 ATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~ 354 (786)
T COG0542 305 ATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHG 354 (786)
T ss_pred eccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccC
Confidence 886532 55899999 998 8999999999999999887766544433
No 243
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.11 E-value=3.5e-09 Score=107.95 Aligned_cols=177 Identities=15% Similarity=0.284 Sum_probs=106.9
Q ss_pred CCCccccc--ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhh
Q 004384 154 EVGYDDVG--GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 228 (757)
Q Consensus 154 ~~~~~~i~--G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l 228 (757)
+.+|+++. +-+..+..++++.. +.....+++|+||+|||||+|+++++... +..++.+++.++
T Consensus 14 ~~~~d~f~~~~~~~~~~~l~~~~~------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 14 PPTFDNFVAGENAELVARLRELAA------------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred hhhhcccccCCcHHHHHHHHHHHh------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 34566633 44555555555443 12345689999999999999999999875 556777777654
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeE-EEEEecCCCC--
Q 004384 229 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 305 (757)
Q Consensus 229 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v-~vI~atn~~~-- 305 (757)
... + .......+++|||++.+... ....|..+++........ ++++++..+.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-----------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~ 136 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-----------QQIALFNLFNRVRAHGQGALLVAGPAAPLAL 136 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-----------HHHHHHHHHHHHHHcCCcEEEEeCCCCHHhC
Confidence 321 1 11224569999999976321 123455555554444443 4444433332
Q ss_pred CCCHHhhccCCc--ceEEEeCCCCHHHHHHHHHHHhcC--CCCCCchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 306 SIDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 306 ~ld~~l~r~~rf--~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
.+.+.+.+ || ...+.+++|+..++..++...... +.+.+ .-+..++....| +...+..++..
T Consensus 137 ~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~-~al~~L~~~~~g-n~~~l~~~l~~ 202 (227)
T PRK08903 137 PLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLAD-EVPDYLLTHFRR-DMPSLMALLDA 202 (227)
T ss_pred CCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHhccC-CHHHHHHHHHH
Confidence 34566665 44 478999999998888888765543 33333 346777774433 34455555544
No 244
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=2.3e-09 Score=122.29 Aligned_cols=192 Identities=16% Similarity=0.226 Sum_probs=122.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---------- 220 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~---------- 220 (757)
++++-+|+++.|.+..++.|+.++..- .-+..+||+||+|+||||+++++|+.+++.-
T Consensus 9 KyRP~~f~dviGQe~vv~~L~~~l~~~------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQ------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 566778999999999999998887642 1133579999999999999999999886410
Q ss_pred ---EEEechhhhh----------hccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHH
Q 004384 221 ---FCINGPEIMS----------KLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLL 283 (757)
Q Consensus 221 ---~~v~~~~l~~----------~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll 283 (757)
.+-+|..+.. ......-..++.+++.+.. ....|++|||+|.+... ..+.|+
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-----------a~NaLL 145 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-----------AFNAML 145 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------HHHHHH
Confidence 0001111100 0001122345666655432 23469999999988532 235566
Q ss_pred HHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCch
Q 004384 284 TLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVG 362 (757)
Q Consensus 284 ~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~ 362 (757)
..++... ..+.+|.+|+++..+.+.+++ |. ..+++..++.++....++..+....+. ++..+..++..+.| +.
T Consensus 146 KtLEEPP--~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-sl 219 (618)
T PRK14951 146 KTLEEPP--EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SM 219 (618)
T ss_pred HhcccCC--CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 6666532 356666677778888877777 65 668898898888877777655433322 33347777877766 44
Q ss_pred hHHHHHHHH
Q 004384 363 ADLAALCTE 371 (757)
Q Consensus 363 ~dl~~l~~~ 371 (757)
+++..++..
T Consensus 220 R~al~lLdq 228 (618)
T PRK14951 220 RDALSLTDQ 228 (618)
T ss_pred HHHHHHHHH
Confidence 555555443
No 245
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.11 E-value=1.2e-09 Score=113.56 Aligned_cols=132 Identities=25% Similarity=0.286 Sum_probs=89.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh------hhhhccchhHHH-H--------------------HHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGESESN-L--------------------RKAF 244 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~------l~~~~~g~~~~~-l--------------------~~vf 244 (757)
+.+++|+||||||||++|+++|..++.+++.++|.. +++.+.+..... + +.++
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 568999999999999999999999999999988743 333322211110 0 1112
Q ss_pred HHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--------------CCCeEEEEEecCCCC-----
Q 004384 245 EEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------------SRAHVIVIGATNRPN----- 305 (757)
Q Consensus 245 ~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--------------~~~~v~vI~atn~~~----- 305 (757)
. |.. ...++++||++.+-+ .+...|+.+++.-. ....+.||+|+|...
T Consensus 101 ~-A~~-~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 101 L-AVR-EGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred H-HHH-cCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 2 222 246999999997643 23455666664311 123567899999752
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 306 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 306 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
.+++++.+ || ..+.++.|+.++-.+|++.+.
T Consensus 168 ~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hc-EEEECCCCCHHHHHHHHHHhh
Confidence 55788887 87 678999999999999988764
No 246
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.11 E-value=1.3e-09 Score=120.80 Aligned_cols=171 Identities=24% Similarity=0.347 Sum_probs=115.8
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhc
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIAT 538 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~ 538 (757)
++.+-+||+||||-||||||+.+|+.+|+..+.++++|=.+. ......|..+.++-. ...|.++++||||--
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa-- 399 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA-- 399 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCC--
Confidence 344558999999999999999999999999999999985331 112233333333221 256899999999863
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhc-------CCCCC------------CeEEEEeeCCCCCCCCcccc--CCCccceEE
Q 004384 539 QRGSSVGDAGGAADRVLNQLLTEMD-------GMSAK------------KTVFIIGATNRPDIIDPALL--RPGRLDQLI 597 (757)
Q Consensus 539 ~r~~~~~~~~~~~~~~~~~ll~~ld-------~~~~~------------~~v~vi~tTn~~~~ld~all--rpgRf~~~i 597 (757)
....++.+|..+. |-... -.--||+.+|. ..-|||. | -|-.+|
T Consensus 400 ------------~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr--~~A~ii 463 (877)
T KOG1969|consen 400 ------------PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLR--PFAEII 463 (877)
T ss_pred ------------cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcc--cceEEE
Confidence 2344555555443 11110 02357888884 4557663 5 588999
Q ss_pred EecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 598 YIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 598 ~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
+|++|......+=|+..+.+.++. .|...|...++ ++..||++.++.....|.+..
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 999999988777777777665554 45555555555 445699999999888887643
No 247
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2.7e-09 Score=122.04 Aligned_cols=187 Identities=21% Similarity=0.319 Sum_probs=126.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++.+|+++.|.++.++.++..+... ..+..+||+||+|||||++|+.+|..+...
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQG------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 456778999999999999998887641 124458999999999999999999987531
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.+...+. .....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naL 139 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNAL 139 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 23333211 122344666665543 23456999999998842 134567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+.+..|+..+-...++..++...+. ++..+..++....| .
T Consensus 140 LKtLEepp--~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~ 213 (559)
T PRK05563 140 LKTLEEPP--AHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-G 213 (559)
T ss_pred HHHhcCCC--CCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77776543 356666667778889998887 66 457899999888888887665543332 33446777777765 4
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
.+++..++..+
T Consensus 214 ~R~al~~Ldq~ 224 (559)
T PRK05563 214 MRDALSILDQA 224 (559)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 248
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=1.2e-09 Score=121.38 Aligned_cols=155 Identities=20% Similarity=0.365 Sum_probs=99.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 269 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 269 (757)
.+++||||+|+|||+|++++++.+ +..+++++..++...+.......-...|.... ..+.+|+|||++++..+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~- 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA- 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-
Confidence 569999999999999999999876 56678888766554332221111111233322 3467999999998864321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC---CCCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhcCCCC
Q 004384 270 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN---SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKL 344 (757)
Q Consensus 270 ~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~---~ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~~~~l 344 (757)
....++..++.+......+|++++..|. .+++.+++ ||. ..+.+..|+.+.|..|++..+....+
T Consensus 220 --------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~ 289 (445)
T PRK12422 220 --------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSI 289 (445)
T ss_pred --------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 1233444444433333455655555554 45678877 774 78899999999999999877654432
Q ss_pred C-CchhhhHHhHhcCC
Q 004384 345 S-DDVDLERIAKDTHG 359 (757)
Q Consensus 345 ~-~~~~l~~la~~t~g 359 (757)
. ++..++.++....+
T Consensus 290 ~l~~evl~~la~~~~~ 305 (445)
T PRK12422 290 RIEETALDFLIEALSS 305 (445)
T ss_pred CCCHHHHHHHHHhcCC
Confidence 2 23346777776664
No 249
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.10 E-value=2.9e-11 Score=113.30 Aligned_cols=109 Identities=28% Similarity=0.398 Sum_probs=72.1
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc------cccccC---chhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL------LTMWFG---ESEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l------~~~~~g---~~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
+++|+||||||||++|+.+|..++.+++.+.++.. ...|.- ..+-.-..+.+..+ .++++||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 48999999999999999999999999988887643 222221 11100001111111 4589999999884
Q ss_pred cccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCC------eEEEEeeCCCCC----CCCccccCCCcc
Q 004384 538 TQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKK------TVFIIGATNRPD----IIDPALLRPGRL 593 (757)
Q Consensus 538 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~------~v~vi~tTn~~~----~ld~allrpgRf 593 (757)
...+++.|+..++.-. ... ++.+|+|+|..+ .+++|++| ||
T Consensus 78 -------------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 -------------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp --------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -------------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 3566677776666421 011 389999999998 99999999 87
No 250
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.10 E-value=1.7e-09 Score=109.09 Aligned_cols=179 Identities=21% Similarity=0.281 Sum_probs=113.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe------EEEE
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF------FFCI 223 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~------~~~v 223 (757)
++..+-+++++.|.+..++.++..+.- ....+.|||||||||||+.++++|.++..+ +...
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~-------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~l 94 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR-------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLEL 94 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh-------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhh
Confidence 356677899999999999888777653 123579999999999999999999998652 2233
Q ss_pred echhhhhhccchhHHHHHHHHHHHHh---------cCC-eEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCC
Q 004384 224 NGPEIMSKLAGESESNLRKAFEEAEK---------NAP-SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 293 (757)
Q Consensus 224 ~~~~l~~~~~g~~~~~l~~vf~~a~~---------~~p-~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 293 (757)
+.++-.+.... ..++. -|..... +.| .|++|||.|.+... ....|...|+....
T Consensus 95 naSderGisvv--r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-----------aq~aLrr~mE~~s~-- 158 (346)
T KOG0989|consen 95 NASDERGISVV--REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-----------AQAALRRTMEDFSR-- 158 (346)
T ss_pred cccccccccch--hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH-----------HHHHHHHHHhcccc--
Confidence 33332222111 11111 1121111 112 69999999988532 34667788887554
Q ss_pred eEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCC
Q 004384 294 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 360 (757)
Q Consensus 294 ~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 360 (757)
.+.++..||.++.|...+.+ |. ..+.|+....+.....|+.....-.+. ++..+..++..+.|-
T Consensus 159 ~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 159 TTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGD 223 (346)
T ss_pred ceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Confidence 56667789999988877776 55 334556666665556666554433332 233477788777663
No 251
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.10 E-value=1.6e-09 Score=123.02 Aligned_cols=188 Identities=18% Similarity=0.258 Sum_probs=122.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++-+|++|.|.++.++.+...+... ..+..+||+||+|+||||+|+.+|+.++..
T Consensus 9 k~rP~~f~divGq~~v~~~L~~~i~~~------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQ------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHHcC------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456678999999999999988887641 123458999999999999999999988642
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.++..+.. ....|++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence 12222110 1123446666665532 2346999999987742 123567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+.+|.+|+++..+.+.+++ |+ ..+++..++..+-...+...++.-.+. ++..+..++..+.| +
T Consensus 140 LK~LEepp--~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-s 213 (527)
T PRK14969 140 LKTLEEPP--EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-S 213 (527)
T ss_pred HHHHhCCC--CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 77777633 356666677777888777776 55 567888888887776666554332222 23346677777655 3
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
.+++..++..+.
T Consensus 214 lr~al~lldqai 225 (527)
T PRK14969 214 MRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 252
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=5.8e-09 Score=112.84 Aligned_cols=185 Identities=18% Similarity=0.154 Sum_probs=121.0
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCce----E--------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF----I-------- 494 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~----i-------- 494 (757)
...+++|.|++.+++.|.+.+... +.+..+||+||+|+||+++|.++|..+-+.- -
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 346889999999999998876531 3345699999999999999999998752110 0
Q ss_pred -EE-------------eCcccccccc---Cc--------hhHHHHHHHHHH----HhCCCeEEEEecccchhcccCCCCC
Q 004384 495 -SV-------------KGPELLTMWF---GE--------SEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVG 545 (757)
Q Consensus 495 -~v-------------~~~~l~~~~~---g~--------~e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~ 545 (757)
.+ +-+++.--.. +. .-..||.+-+.+ ....+.|++|||+|.+
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m--------- 153 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM--------- 153 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc---------
Confidence 00 0011110000 00 123355555443 3455789999999986
Q ss_pred CCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC
Q 004384 546 DAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD 625 (757)
Q Consensus 546 ~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d 625 (757)
.....|.||..++.. ..+.++|.+|+.++.+.+.+.+ |+. .+.|++|+.++..+++...... ..+..
T Consensus 154 -----~~~aanaLLK~LEep--p~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~~ 220 (365)
T PRK07471 154 -----NANAANALLKVLEEP--PARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDDP 220 (365)
T ss_pred -----CHHHHHHHHHHHhcC--CCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHHH
Confidence 245678899998863 3456777788889888888766 875 8999999999999888775421 11112
Q ss_pred HHHHHHHcCCCCHHHHHHHHH
Q 004384 626 LRALAKYTQGFSGADITEICQ 646 (757)
Q Consensus 626 ~~~la~~~~g~sg~di~~~~~ 646 (757)
+..++..+.| |.....+++.
T Consensus 221 ~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 221 RAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHcCC-CHHHHHHHhc
Confidence 3456666766 4444444443
No 253
>PRK08727 hypothetical protein; Validated
Probab=99.10 E-value=3.1e-09 Score=108.44 Aligned_cols=145 Identities=26% Similarity=0.385 Sum_probs=93.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 269 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 269 (757)
..++|+||+|||||+|+++++..+ +....+++..+.. ..+..+++.. ....+|+|||++.+..+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~l--~~~dlLiIDDi~~l~~~~~- 110 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEAL--EGRSLVALDGLESIAGQRE- 110 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHHH--hcCCEEEEeCcccccCChH-
Confidence 459999999999999999997764 4444555543322 2233344433 2346999999998764321
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---CHHhhccCCc--ceEEEeCCCCHHHHHHHHHHHhc--CC
Q 004384 270 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTK--NM 342 (757)
Q Consensus 270 ~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l---d~~l~r~~rf--~~~i~i~~p~~~~r~~il~~~~~--~~ 342 (757)
....++++++.......-+|+.+...|..+ ++.+++ || ...+.++.|+.+++.++++.++. ++
T Consensus 111 --------~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l 180 (233)
T PRK08727 111 --------DEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGL 180 (233)
T ss_pred --------HHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCC
Confidence 113445555544333333444444466655 688887 64 56789999999999999997543 44
Q ss_pred CCCCchhhhHHhHhcCC
Q 004384 343 KLSDDVDLERIAKDTHG 359 (757)
Q Consensus 343 ~l~~~~~l~~la~~t~g 359 (757)
.+.+ ..+..++....|
T Consensus 181 ~l~~-e~~~~La~~~~r 196 (233)
T PRK08727 181 ALDE-AAIDWLLTHGER 196 (233)
T ss_pred CCCH-HHHHHHHHhCCC
Confidence 4433 357888888764
No 254
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=3.1e-09 Score=119.75 Aligned_cols=186 Identities=18% Similarity=0.236 Sum_probs=123.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++.+|+++.|.+..++.+...+... ..+..+||+||+|+||||+|+.+|..+.+.
T Consensus 9 KyRP~~F~dIIGQe~iv~~L~~aI~~~------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C 76 (605)
T PRK05896 9 KYRPHNFKQIIGQELIKKILVNAILNN------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSC 76 (605)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 567788999999999999888876431 123469999999999999999999987531
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ...-..++.+...+.. ....+++|||+|.+-.. ..+.|
T Consensus 77 ~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-----------A~NaL 139 (605)
T PRK05896 77 SVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-----------AWNAL 139 (605)
T ss_pred HHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-----------HHHHH
Confidence 22222211 0112335555554432 23469999999987421 23567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++..+....+...+..... .++..+..++..+.|-
T Consensus 140 LKtLEEPp--~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~Gd- 213 (605)
T PRK05896 140 LKTLEEPP--KHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGS- 213 (605)
T ss_pred HHHHHhCC--CcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCc-
Confidence 77777643 356677777888899888887 65 46899999998888777765543322 2233467777777663
Q ss_pred hhHHHHHHHH
Q 004384 362 GADLAALCTE 371 (757)
Q Consensus 362 ~~dl~~l~~~ 371 (757)
.+++..++..
T Consensus 214 lR~AlnlLek 223 (605)
T PRK05896 214 LRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 255
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=5e-10 Score=104.24 Aligned_cols=126 Identities=34% Similarity=0.475 Sum_probs=83.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCc---eEEEeCcccccc--------------ccCchhHHHHHHHHHHHhCCCeEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPELLTM--------------WFGESEANVREIFDKARQSAPCVL 528 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~---~i~v~~~~l~~~--------------~~g~~e~~i~~lf~~a~~~~p~il 528 (757)
..++|+||||||||++++.+|..+... ++.+++...... .........+.+++.++...+.++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999998765 777777654321 223446677899999998888999
Q ss_pred EEecccchhcccCCCCCCCCcchHHHHHHH--HHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCC
Q 004384 529 FFDELDSIATQRGSSVGDAGGAADRVLNQL--LTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 602 (757)
Q Consensus 529 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~l--l~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p 602 (757)
|+||++.+..... ....... ...........+..+|+++|......+..+++ |++..+.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh-ccceEEEecCC
Confidence 9999999865321 1110000 00011111234567888888733344444443 99999888765
No 256
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=2.5e-09 Score=115.09 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=121.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC-------ceEEE---
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISV--- 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~-------~~i~v--- 496 (757)
...++++.|.++++..|...+... ..+..+||+||+|+|||++|+.+|..+.+ +....
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 346889999999999998876531 23456999999999999999999998643 11000
Q ss_pred -e-----------Ccccc---ccc-c--C--c---hhHHHHHHHHH----HHhCCCeEEEEecccchhcccCCCCCCCCc
Q 004384 497 -K-----------GPELL---TMW-F--G--E---SEANVREIFDK----ARQSAPCVLFFDELDSIATQRGSSVGDAGG 549 (757)
Q Consensus 497 -~-----------~~~l~---~~~-~--g--~---~e~~i~~lf~~----a~~~~p~il~iDEid~l~~~r~~~~~~~~~ 549 (757)
. -+++. ..+ . | . +-..+|.+-+. +......|++|||+|.+-
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 0 01111 000 0 0 0 01234443333 223445799999999973
Q ss_pred chHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHH
Q 004384 550 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRAL 629 (757)
Q Consensus 550 ~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~l 629 (757)
....|.||..|+... .+.++|..|+.|+.+.|.+.+ |+ ..+.|++|+.++..++++......+++ +..+..+
T Consensus 155 --~~aanaLLk~LEEpp--~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEEPP--ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhcCC--CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHH
Confidence 345678899998743 345555556778888888876 88 599999999999999998743222211 2225566
Q ss_pred HHHcCCCCHHHHHHHHHHHH
Q 004384 630 AKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 630 a~~~~g~sg~di~~~~~~a~ 649 (757)
++.+.| +.+...++.....
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~ 245 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGG 245 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCc
Confidence 666665 4455555554443
No 257
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4e-09 Score=115.66 Aligned_cols=176 Identities=23% Similarity=0.289 Sum_probs=116.7
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE---------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 220 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~--------- 220 (757)
++.++.+|+++.|.+..++.+++.+... ..+.++|||||||+|||+++++++..+....
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~~~------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENN------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3567889999999999999988887642 1245799999999999999999999875421
Q ss_pred ---EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCC
Q 004384 221 ---FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRA 293 (757)
Q Consensus 221 ---~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~ 293 (757)
+.+++. .......++.+++.+.. ....++++||++.+... ..+.|+..++... .
T Consensus 77 ~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------~~~~ll~~le~~~--~ 137 (367)
T PRK14970 77 FNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------AFNAFLKTLEEPP--A 137 (367)
T ss_pred cceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-----------HHHHHHHHHhCCC--C
Confidence 112111 11123456666665432 23469999999877421 2355666665432 2
Q ss_pred eEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCC
Q 004384 294 HVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 359 (757)
Q Consensus 294 ~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g 359 (757)
..++|.+++.+..+.+++++ |+ ..+++..|+..+...++...+....+ .++..+..++..+.|
T Consensus 138 ~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 138 HAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred ceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 44555566677888888887 55 45889999988888777765544333 233456777776554
No 258
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.08 E-value=8.3e-10 Score=109.09 Aligned_cols=143 Identities=22% Similarity=0.304 Sum_probs=96.9
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCCc------------------------eEEEeCccccccccCchhHHHHHHHHH
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 519 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~~------------------------~i~v~~~~l~~~~~g~~e~~i~~lf~~ 519 (757)
.+..+||+||+|+|||++|+.++..+... +..+.... .. -....++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHHH
Confidence 34569999999999999999999986431 22221110 00 122456666666
Q ss_pred HHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccce
Q 004384 520 ARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 520 a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~ 595 (757)
+.. ....|+++||+|.+. ....+.||..|+... ...++|.+||.++.+.+++.+ |+.
T Consensus 88 ~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~~~--~~~~~il~~~~~~~l~~~i~s--r~~- 148 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEEPP--PNTLFILITPSPEKLLPTIRS--RCQ- 148 (188)
T ss_pred HccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcCCC--CCeEEEEEECChHhChHHHHh--hcE-
Confidence 554 335799999999873 334677888888733 345555566777899999987 774
Q ss_pred EEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCC
Q 004384 596 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQG 635 (757)
Q Consensus 596 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g 635 (757)
.+.|++|+.++..++++.. +++ +..+..+++.+.|
T Consensus 149 ~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888776 233 2235555655554
No 259
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4.3e-09 Score=120.89 Aligned_cols=191 Identities=21% Similarity=0.291 Sum_probs=124.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE---Eec--
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC---ING-- 225 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~---v~~-- 225 (757)
+.++.+|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+++|..+.+.-.. -.|
T Consensus 11 KyRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~ 78 (725)
T PRK07133 11 KYRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQE 78 (725)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhH
Confidence 457789999999999999998887641 123458999999999999999999987542110 000
Q ss_pred -h-------hhh--hhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004384 226 -P-------EIM--SKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 291 (757)
Q Consensus 226 -~-------~l~--~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 291 (757)
. ++. ..........++.+.+.+.. ....|++|||+|.+.. .....|+..|+...
T Consensus 79 C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEPP- 146 (725)
T PRK07133 79 CIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEPP- 146 (725)
T ss_pred HHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcCC-
Confidence 0 000 00000123446666665543 3446999999998742 13466777777643
Q ss_pred CCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHH
Q 004384 292 RAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCT 370 (757)
Q Consensus 292 ~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~ 370 (757)
..+++|.+|+.++.+.+.+++ |+ ..+.+..++..+....+...+....+. ++..+..++..+.|- .+++..++.
T Consensus 147 -~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~Gs-lR~AlslLe 221 (725)
T PRK07133 147 -KHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGS-LRDALSIAE 221 (725)
T ss_pred -CceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHH
Confidence 366777777888899888887 66 478999999988888877654433332 223366777777653 344444443
No 260
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.08 E-value=1.8e-10 Score=111.20 Aligned_cols=113 Identities=27% Similarity=0.389 Sum_probs=76.4
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCC----ceEEEeCccccccccCchhHHHHHHHHHH----HhCCCeEEEEecccc
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQA----NFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDS 535 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~----~~i~v~~~~l~~~~~g~~e~~i~~lf~~a----~~~~p~il~iDEid~ 535 (757)
|...++|+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+...+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456999999999999999999999985 9999999887651 11122222222211 111113999999999
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCeEEEEeeCCCCC
Q 004384 536 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRPD 581 (757)
Q Consensus 536 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~tTn~~~ 581 (757)
..+..+ ...+.....+.+.||+.||+-. +.+++++|+|+|.-.
T Consensus 80 a~~~~~---~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSNS---GGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTTT---TCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccccc---ccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 887511 2223345688999999997631 235799999999754
No 261
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.08 E-value=3.5e-09 Score=115.80 Aligned_cols=175 Identities=22% Similarity=0.340 Sum_probs=118.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++..|+++.|.++.++.+.+.+... ..+..+||+||||+|||++++.++..+...
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~~~------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c 74 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIKNG------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNEC 74 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 456778999999999999998877531 224568999999999999999999887421
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.+++.+... ...+++|||+|.+.. ...+.|
T Consensus 75 ~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~L 137 (355)
T TIGR02397 75 ESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNAL 137 (355)
T ss_pred HHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHH
Confidence 23333221 11233456666655432 235999999987742 123556
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
+..++... ..+++|.+|++++.+.+.+++ |+ ..++++.|+..+..+++...++...+. ++..+..++..+.|
T Consensus 138 l~~le~~~--~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 138 LKTLEEPP--EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHhCCc--cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 77776532 356666677878877888877 66 568999999999888888766543322 23346666766655
No 262
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.08 E-value=2.4e-09 Score=124.84 Aligned_cols=183 Identities=25% Similarity=0.383 Sum_probs=118.0
Q ss_pred cCCCCCcccccChHHHHH---HHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004384 151 RLDEVGYDDVGGVRKQMA---QIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 227 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~---~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~ 227 (757)
++++-+++++.|.++.+. .++.++.. ....+++|+|||||||||+|++++...+..++.+++..
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~-------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~ 87 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA-------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVL 87 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhh
Confidence 456778999999998875 35555432 22347999999999999999999999998888887642
Q ss_pred hhhhccchhHHHHHHHHHHHH-----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004384 228 IMSKLAGESESNLRKAFEEAE-----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 302 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~-----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn 302 (757)
.. ...++..+..+. .....+|||||+|.+... ....|+..++ ...+++|++|+
T Consensus 88 ~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-----------qQdaLL~~lE----~g~IiLI~aTT 145 (725)
T PRK13341 88 AG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-----------QQDALLPWVE----NGTITLIGATT 145 (725)
T ss_pred hh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-----------HHHHHHHHhc----CceEEEEEecC
Confidence 11 112233333321 134569999999987422 1234444443 34677777654
Q ss_pred C-C-CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc-------C--CCCCCchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 303 R-P-NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK-------N--MKLSDDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 303 ~-~-~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~-------~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
. + ..+++++.+ |. ..+.++.++.++...+++..+. . +.+ ++..+..++....| ..+.+..++..
T Consensus 146 enp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I-~deaL~~La~~s~G-D~R~lln~Le~ 220 (725)
T PRK13341 146 ENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL-EPEAEKHLVDVANG-DARSLLNALEL 220 (725)
T ss_pred CChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC-CHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3 2 457788887 43 4588999999999999887654 1 222 23346777777644 34444444444
Q ss_pred HH
Q 004384 372 AA 373 (757)
Q Consensus 372 a~ 373 (757)
+.
T Consensus 221 a~ 222 (725)
T PRK13341 221 AV 222 (725)
T ss_pred HH
Confidence 33
No 263
>PRK09087 hypothetical protein; Validated
Probab=99.07 E-value=7.1e-10 Score=112.24 Aligned_cols=135 Identities=20% Similarity=0.261 Sum_probs=88.0
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCC
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD 546 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~ 546 (757)
.++|+||+|||||+|+++++...+..++ +..++.. .++..... .++++||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCC--------
Confidence 3899999999999999999987654433 3222211 11111112 3788999997621
Q ss_pred CCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC---CccccCCCccc--eEEEecCCCHHHHHHHHHHhhccCCCC
Q 004384 547 AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII---DPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVS 621 (757)
Q Consensus 547 ~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l---d~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~ 621 (757)
.. ..|...++.....++.+||+++..|..+ .+.+.. ||. .++.+.+|+.++|.+|++.+++..++.
T Consensus 102 ----~~---~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~ 172 (226)
T PRK09087 102 ----DE---TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLY 172 (226)
T ss_pred ----CH---HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 11 2244444443344566777777665533 567776 886 788999999999999999999876554
Q ss_pred Ccc-CHHHHHHHcC
Q 004384 622 KDV-DLRALAKYTQ 634 (757)
Q Consensus 622 ~~~-d~~~la~~~~ 634 (757)
-+. -++.|++...
T Consensus 173 l~~ev~~~La~~~~ 186 (226)
T PRK09087 173 VDPHVVYYLVSRME 186 (226)
T ss_pred CCHHHHHHHHHHhh
Confidence 322 2566666655
No 264
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.07 E-value=8.1e-10 Score=119.79 Aligned_cols=121 Identities=25% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCc-------eEEEeC----ccccccc----cCch--hHHHHHHHHHHHhC--CC
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQAN-------FISVKG----PELLTMW----FGES--EANVREIFDKARQS--AP 525 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~-------~i~v~~----~~l~~~~----~g~~--e~~i~~lf~~a~~~--~p 525 (757)
.++++|+||||||||++|+.+|..+... ++.+.. .+++..+ +|-. ......+.+.|... .|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4679999999999999999999887421 222221 2333222 1111 11233445666654 47
Q ss_pred eEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC--------------------CCCCCeEEEEeeCCCCC----
Q 004384 526 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG--------------------MSAKKTVFIIGATNRPD---- 581 (757)
Q Consensus 526 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~--------------------~~~~~~v~vi~tTn~~~---- 581 (757)
+++|||||++.- ..++..++++.|+. +.-..++.||||+|..+
T Consensus 274 ~vliIDEINRan-------------i~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~ 340 (459)
T PRK11331 274 YVFIIDEINRAN-------------LSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLA 340 (459)
T ss_pred cEEEEehhhccC-------------HHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchh
Confidence 999999998842 34455555555441 23346899999999988
Q ss_pred CCCccccCCCccceEEEecC
Q 004384 582 IIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 582 ~ld~allrpgRf~~~i~~~~ 601 (757)
.+|.|++| ||. .|++.+
T Consensus 341 ~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 341 VVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred hccHHHHh--hhh-eEEecC
Confidence 89999999 997 566654
No 265
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=3.1e-09 Score=113.72 Aligned_cols=171 Identities=19% Similarity=0.299 Sum_probs=115.1
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC--------ceEEEeCcc
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--------NFISVKGPE 500 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--------~~i~v~~~~ 500 (757)
+|+++.|++.+++.+...+... ..+..+||+||+|+|||++|+++|..+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5899999999999998876421 23456899999999999999999997532 222222210
Q ss_pred ccccccCchhHHHHHHHHHH----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 501 LLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
++.+ +-..++.+.+.+ ......|++||++|.+ .....|.||..|+.. ..++++|.+
T Consensus 70 --~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m--------------~~~a~naLLK~LEep--p~~t~~il~ 129 (313)
T PRK05564 70 --KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM--------------TEQAQNAFLKTIEEP--PKGVFIILL 129 (313)
T ss_pred --CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhc--------------CHHHHHHHHHHhcCC--CCCeEEEEE
Confidence 0101 123466655533 3334579999999886 244578999999963 345555556
Q ss_pred CCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCC
Q 004384 577 TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFS 637 (757)
Q Consensus 577 Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~s 637 (757)
|+.++.+-|.+.+ |.. .++|++|+.++....++..... + ....+..++..+.|-.
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~ 184 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIP 184 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCH
Confidence 6778999888877 775 9999999999888777665432 2 1223556666666533
No 266
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.05 E-value=3.9e-10 Score=124.35 Aligned_cols=57 Identities=19% Similarity=0.256 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
+.++..|....|.+|+.|| +...++-.+..++++++..+....++.+|..||++.-+
T Consensus 162 Rv~iAmALa~~P~LLIaDE----------PTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vv 218 (539)
T COG1123 162 RVMIAMALALKPKLLIADE----------PTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVV 218 (539)
T ss_pred HHHHHHHHhCCCCEEEECC----------CccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHH
Confidence 4456677778899999999 44455566778889999888888888999999986533
No 267
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=6.9e-09 Score=116.40 Aligned_cols=193 Identities=22% Similarity=0.299 Sum_probs=120.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------E-EE
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------F-FC 222 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~-------~-~~ 222 (757)
+.++..|+++.|.+..++.++..+... ..+..+||+||+|+||||+|+.+|..++.. . .+
T Consensus 9 kyRP~~f~diiGq~~i~~~L~~~i~~~------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 9 KYRPKFFKEVIGQEIVVRILKNAVKLQ------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred hhCCCcHHHccChHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 456778999999999999998887541 113357899999999999999999987631 0 01
Q ss_pred Eechhhhh----------hccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 223 INGPEIMS----------KLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 223 v~~~~l~~----------~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
.+|..+.. .........++.+...+. .....|++|||+|.+.. ...+.|+..++.
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naLLk~LEe 145 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNALLKTLEE 145 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHHHHHHhc
Confidence 11111100 000011223445444433 23456999999997742 123566777765
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHH
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 367 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 367 (757)
.. ..+++|.+|+.++.+.+.+++ |+ ..+.+..++..+...++...++...+. ++..+..++..+.|- .+++..
T Consensus 146 pp--~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~-lr~al~ 219 (486)
T PRK14953 146 PP--PRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGG-MRDAAS 219 (486)
T ss_pred CC--CCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHH
Confidence 43 245555566777778888876 55 468899999999888888766544432 233466777766643 344444
Q ss_pred HHHHH
Q 004384 368 LCTEA 372 (757)
Q Consensus 368 l~~~a 372 (757)
++..+
T Consensus 220 ~Ldkl 224 (486)
T PRK14953 220 LLDQA 224 (486)
T ss_pred HHHHH
Confidence 44433
No 268
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.05 E-value=1.5e-09 Score=124.97 Aligned_cols=86 Identities=27% Similarity=0.425 Sum_probs=58.4
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc----eEEEeC
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----FISVKG 498 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~----~i~v~~ 498 (757)
+..|..-|+++.|.++++..+...+.. .++++|+||||||||+++++++..+... ++.+.-
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 345677899999999999988776542 2479999999999999999999988654 222322
Q ss_pred cc------ccccccCchhHHHHHHHHHHHhC
Q 004384 499 PE------LLTMWFGESEANVREIFDKARQS 523 (757)
Q Consensus 499 ~~------l~~~~~g~~e~~i~~lf~~a~~~ 523 (757)
+. +...+.|..++.++..|..|++.
T Consensus 75 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 105 (608)
T TIGR00764 75 PEDPNMPRIVEVPAGEGREIVEDYKKKAFKQ 105 (608)
T ss_pred CCCCchHHHHHHHHhhchHHHHHHHHHhhcc
Confidence 22 22334455555555555544433
No 269
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.04 E-value=7.5e-09 Score=117.89 Aligned_cols=187 Identities=19% Similarity=0.270 Sum_probs=123.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+.++..|++|.|.+..++.++..+... ..+..+||+||+|+|||++|+++|+.+...
T Consensus 9 kyRP~~f~diiGqe~iv~~L~~~i~~~------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESN------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 457778999999999999998887641 123469999999999999999999987542
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ...-..++.+.+.+. .....+++|||+|.+.. ...+.|
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naL 139 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNAL 139 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHH
Confidence 12222110 011233444443322 34457999999998742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++.. ...+++|.+|+.+..+.+.+++ |+ ..+++..++.++..+.++..++...+. ++..+..++....| .
T Consensus 140 LK~LEep--p~~~vfI~~tte~~kL~~tI~S--Rc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-d 213 (563)
T PRK06647 140 LKTIEEP--PPYIVFIFATTEVHKLPATIKS--RC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-S 213 (563)
T ss_pred HHhhccC--CCCEEEEEecCChHHhHHHHHH--hc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 7777653 3466777777778888888887 66 457888898888888887665433322 33457777777766 4
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
.+++..++..+
T Consensus 214 lR~alslLdkl 224 (563)
T PRK06647 214 VRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHHH
Confidence 45555555443
No 270
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.04 E-value=1.8e-09 Score=125.76 Aligned_cols=156 Identities=23% Similarity=0.335 Sum_probs=104.0
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-------------------
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------------------- 489 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~------------------- 489 (757)
.|.+|.|++.++..|.-....+ ...|+||.|++|||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4778999999998876544322 12469999999999999999999887
Q ss_pred ----------------CCceEEEeCccccccccCch--hHHH--------HHHHHHHHhCCCeEEEEecccchhcccCCC
Q 004384 490 ----------------QANFISVKGPELLTMWFGES--EANV--------REIFDKARQSAPCVLFFDELDSIATQRGSS 543 (757)
Q Consensus 490 ----------------~~~~i~v~~~~l~~~~~g~~--e~~i--------~~lf~~a~~~~p~il~iDEid~l~~~r~~~ 543 (757)
..+|+.+.........+|.. ++.+ ..++..| .-.++|+|||+.+.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~------ 139 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLD------ 139 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCC------
Confidence 23555544332222223321 1111 0111111 12499999999973
Q ss_pred CCCCCcchHHHHHHHHHhhcCCC-----------CCCeEEEEeeCCCC-CCCCccccCCCccceEEEecCC-CHHHHHHH
Q 004384 544 VGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP-DIIDPALLRPGRLDQLIYIPLP-DEDSRHQI 610 (757)
Q Consensus 544 ~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~tTn~~-~~ld~allrpgRf~~~i~~~~p-~~~~r~~I 610 (757)
..+++.|+..|+.-. ...++.+|+|+|.. ..+.++|+. ||+..|.++.| +.+++.+|
T Consensus 140 --------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~i 209 (633)
T TIGR02442 140 --------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHH
Confidence 456777888776321 12368899999964 367889998 99999999877 46888888
Q ss_pred HHHhhc
Q 004384 611 FKACLR 616 (757)
Q Consensus 611 l~~~l~ 616 (757)
++..+.
T Consensus 210 l~~~~~ 215 (633)
T TIGR02442 210 IRRRLA 215 (633)
T ss_pred HHHHHh
Confidence 876543
No 271
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=9.1e-09 Score=104.74 Aligned_cols=83 Identities=23% Similarity=0.400 Sum_probs=61.9
Q ss_pred eEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCeEEEEeeC----CCCCCCCccccCCCcc
Q 004384 526 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGAT----NRPDIIDPALLRPGRL 593 (757)
Q Consensus 526 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~tT----n~~~~ld~allrpgRf 593 (757)
.|+||||||.++.+-+.+.. +-...-+...||-.++|-. ..+.+++||+. ..|..|=|.|- |||
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ--GRf 327 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQ--GRF 327 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhc--CCC
Confidence 59999999999987553321 2234456677887777642 34568888876 45888888876 799
Q ss_pred ceEEEecCCCHHHHHHHHH
Q 004384 594 DQLIYIPLPDEDSRHQIFK 612 (757)
Q Consensus 594 ~~~i~~~~p~~~~r~~Il~ 612 (757)
.-.++....+.+.-..||.
T Consensus 328 PIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 328 PIRVELDALTKEDFERILT 346 (444)
T ss_pred ceEEEcccCCHHHHHHHHc
Confidence 9999999999998888873
No 272
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.03 E-value=9.2e-09 Score=110.66 Aligned_cols=176 Identities=23% Similarity=0.280 Sum_probs=113.0
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----eEEEEe
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCIN 224 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-----~~~~v~ 224 (757)
++.++.+|+|+.|.++.++.++..+... ...+++|+||||||||++++++++.+.. .++.++
T Consensus 9 ~kyrP~~~~~~~g~~~~~~~l~~~i~~~-------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~ 75 (319)
T PRK00440 9 EKYRPRTLDEIVGQEEIVERLKSYVKEK-------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELN 75 (319)
T ss_pred hhhCCCcHHHhcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEec
Confidence 3456778999999999999998887531 1235899999999999999999998732 234444
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh------cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEE
Q 004384 225 GPEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 298 (757)
Q Consensus 225 ~~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI 298 (757)
+.+..+ ...+...+..... ..+.++++||++.+... ....|...++..... ..+|
T Consensus 76 ~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-----------~~~~L~~~le~~~~~--~~lI 136 (319)
T PRK00440 76 ASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-----------AQQALRRTMEMYSQN--TRFI 136 (319)
T ss_pred cccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-----------HHHHHHHHHhcCCCC--CeEE
Confidence 332110 1112222222211 23469999999887421 124566666655443 3444
Q ss_pred EecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCC
Q 004384 299 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 360 (757)
Q Consensus 299 ~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 360 (757)
.+++.+..+.+.+++ |+. .++++.++..+...+++..++...+ .++..+..++..+.|.
T Consensus 137 l~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd 196 (319)
T PRK00440 137 LSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGD 196 (319)
T ss_pred EEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 566766777677776 553 5899999999988888877654333 2334577787776653
No 273
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.03 E-value=1.2e-08 Score=113.91 Aligned_cols=176 Identities=20% Similarity=0.294 Sum_probs=117.2
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 219 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------- 219 (757)
++.++.+|+||.|.+..++.++..+... ..+..+||+||+|+|||++|+++|..+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~ 76 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCN 76 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCc
Confidence 3567789999999999999888887641 123568999999999999999999987431
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHHHHHHHH
Q 004384 220 ---------------FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVS 280 (757)
Q Consensus 220 ---------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 280 (757)
++.+++... . .-..++.+.+.. ......+++|||+|.+... ..+
T Consensus 77 ~c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-----------~~n 139 (451)
T PRK06305 77 QCASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-----------AFN 139 (451)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-----------HHH
Confidence 222322110 0 112233332222 2245679999999887421 245
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCC
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 359 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g 359 (757)
.|+..++... ..+++|.+|+.+..+.+.+++ |+ ..+++..++.++-...+...++.... .++..+..++..+.|
T Consensus 140 ~LLk~lEep~--~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 140 SLLKTLEEPP--QHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHhhcCC--CCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777777643 356666677878888888887 66 46899999998887777765543332 233346777777755
No 274
>PRK05642 DNA replication initiation factor; Validated
Probab=99.03 E-value=7.2e-09 Score=105.80 Aligned_cols=145 Identities=19% Similarity=0.318 Sum_probs=98.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREK 269 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~ 269 (757)
.+++|+||+|||||+|+++++.++ +..+++++..++.... ..+++.... ..+|+|||++.+..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~-- 113 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKA-- 113 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCCh--
Confidence 579999999999999999998764 4567778776665321 122333322 2589999999875432
Q ss_pred CchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---CHHhhccCCc--ceEEEeCCCCHHHHHHHHHHHhcC--C
Q 004384 270 THGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRF--DREIDIGVPDEVGRLEVLRIHTKN--M 342 (757)
Q Consensus 270 ~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l---d~~l~r~~rf--~~~i~i~~p~~~~r~~il~~~~~~--~ 342 (757)
.....|+++++.+...+..++++++..|..+ .+.+++ || ...+.+..|+.+++.++++..... +
T Consensus 114 -------~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 114 -------DWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred -------HHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 1224577777766665667777777666443 577887 55 467788999999999999854433 3
Q ss_pred CCCCchhhhHHhHhcCC
Q 004384 343 KLSDDVDLERIAKDTHG 359 (757)
Q Consensus 343 ~l~~~~~l~~la~~t~g 359 (757)
.+. +.-++++++...+
T Consensus 185 ~l~-~ev~~~L~~~~~~ 200 (234)
T PRK05642 185 HLT-DEVGHFILTRGTR 200 (234)
T ss_pred CCC-HHHHHHHHHhcCC
Confidence 333 3346777777665
No 275
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=5.6e-09 Score=119.96 Aligned_cols=185 Identities=20% Similarity=0.284 Sum_probs=122.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
++++-+|++|.|.++.++.|+..+... ..+..+||+||+|+||||+++++|+.+...
T Consensus 9 k~RP~~f~~iiGq~~v~~~L~~~i~~~------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTG------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 467788999999999999998887641 123458999999999999999999987532
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.+...+.. ....|++|||+|.+... ..+.|
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-----------a~naL 139 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-----------AFNAL 139 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-----------HHHHH
Confidence 22333221 1112345555554432 23369999999987531 24677
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
+..|+... ..+++|.+|+.++.+.+.+++ |+ ..+++..++..+-...+...++...+ .++..+..++..+.|-
T Consensus 140 Lk~LEepp--~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~- 213 (576)
T PRK14965 140 LKTLEEPP--PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGS- 213 (576)
T ss_pred HHHHHcCC--CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-
Confidence 88887643 366777778888889888887 55 45778888887776666654443322 2334567777777763
Q ss_pred hhHHHHHHH
Q 004384 362 GADLAALCT 370 (757)
Q Consensus 362 ~~dl~~l~~ 370 (757)
.+++..++.
T Consensus 214 lr~al~~Ld 222 (576)
T PRK14965 214 MRDSLSTLD 222 (576)
T ss_pred HHHHHHHHH
Confidence 344444443
No 276
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=5.6e-09 Score=109.44 Aligned_cols=191 Identities=19% Similarity=0.256 Sum_probs=114.5
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCC-ceEE--EeCc-----ccc---ccccCch-----h-HHHHHHH----HHHHhCCC
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQA-NFIS--VKGP-----ELL---TMWFGES-----E-ANVREIF----DKARQSAP 525 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~-~~i~--v~~~-----~l~---~~~~g~~-----e-~~i~~lf----~~a~~~~p 525 (757)
-++|+||||+||||+++.++..+.. .+.. +..+ +++ ....|.. . ...+.+. .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 3889999999999999999998752 2221 1111 111 0011211 1 1112222 22335567
Q ss_pred eEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee--CCCCCCCC-c---cccCCCccceEEEe
Q 004384 526 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA--TNRPDIID-P---ALLRPGRLDQLIYI 599 (757)
Q Consensus 526 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t--Tn~~~~ld-~---allrpgRf~~~i~~ 599 (757)
.++++||++.+... ....+..+..... .....+.|+.+ +...+.+. + .+.+ |+...+++
T Consensus 125 ~vliiDe~~~l~~~-----------~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLTPE-----------LLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCCHH-----------HHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 89999999986321 1222222222111 11222222232 22222222 1 2444 88889999
Q ss_pred cCCCHHHHHHHHHHhhccCCCC-----CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 004384 600 PLPDEDSRHQIFKACLRKSPVS-----KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAM 674 (757)
Q Consensus 600 ~~p~~~~r~~Il~~~l~~~~~~-----~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 674 (757)
++.+.++..+++...++..+.. .+..++.+++.+.|.. +.|..+|..|...|..+.
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~------------------ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE------------------ 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC------------------
Confidence 9999999999999888654321 2234777888999876 559999999988887754
Q ss_pred cccccccccccccHHHHHHHHhhcC
Q 004384 675 DEDAAEDEVSEIKAAHFEESMKFAR 699 (757)
Q Consensus 675 ~~~~~~~~~~~i~~~~~~~a~~~~~ 699 (757)
...|+.++++.++..+.
T Consensus 251 --------~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 --------KREIGGEEVREVIAEID 267 (269)
T ss_pred --------CCCCCHHHHHHHHHHhh
Confidence 23799999999998764
No 277
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.01 E-value=2.6e-08 Score=115.34 Aligned_cols=180 Identities=27% Similarity=0.422 Sum_probs=110.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeE
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFF 220 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~ 220 (757)
.+++-+|+++.|.+..++.+.+.+.. ..+.+++|+|||||||||+|+++.+.. +.++
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f 213 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF 213 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe
Confidence 34567899999999998887665533 124579999999999999999998765 3467
Q ss_pred EEEechhhhh-------hccchhHH----HHHHHHHH----------HHhcCCeEEEEcccccccCCCCCCchHHHHHHH
Q 004384 221 FCINGPEIMS-------KLAGESES----NLRKAFEE----------AEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 279 (757)
Q Consensus 221 ~~v~~~~l~~-------~~~g~~~~----~l~~vf~~----------a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 279 (757)
+.++|..+.. ...+.... ..+..+.. .......+|||||++.+-.. ..
T Consensus 214 v~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q 282 (615)
T TIGR02903 214 VEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-----------LQ 282 (615)
T ss_pred EEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-----------HH
Confidence 8888865410 11111100 00111110 01123469999999876432 22
Q ss_pred HHHHHHhhcc--------------------------cCCCeEEEEE-ecCCCCCCCHHhhccCCcceEEEeCCCCHHHHH
Q 004384 280 SQLLTLMDGL--------------------------KSRAHVIVIG-ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRL 332 (757)
Q Consensus 280 ~~Ll~~l~~~--------------------------~~~~~v~vI~-atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 332 (757)
..|+..++.- .....+++++ +++.+..+++++++ |+. .+.+++++.++..
T Consensus 283 ~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~ 359 (615)
T TIGR02903 283 NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHH
Confidence 3333333221 0122455555 45667889999987 774 5788899999999
Q ss_pred HHHHHHhcCCCCC-CchhhhHHhHhc
Q 004384 333 EVLRIHTKNMKLS-DDVDLERIAKDT 357 (757)
Q Consensus 333 ~il~~~~~~~~l~-~~~~l~~la~~t 357 (757)
.|++..+....+. .+.-++.++..+
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys 385 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCC
Confidence 9998876654321 222345555544
No 278
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.00 E-value=5.7e-09 Score=116.29 Aligned_cols=167 Identities=16% Similarity=0.243 Sum_probs=107.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHH---HHHHHHHHHHhcCCeEEEEccccccc
Q 004384 193 KGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESES---NLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~---~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
.+++|+|++|+|||+|+++++..+ +..++++++.++...+...... .+....+. -..+.+|+|||++++.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~--~~~~dvLiIDDiq~l~ 219 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNE--ICQNDVLIIDDVQFLS 219 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHH--hccCCEEEEecccccc
Confidence 469999999999999999999865 3567888888776655433221 12111111 1345799999999885
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CCHHhhccCCc--ceEEEeCCCCHHHHHHHHHHHh
Q 004384 265 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRF--DREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 265 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~---ld~~l~r~~rf--~~~i~i~~p~~~~r~~il~~~~ 339 (757)
.+. .....|..+++.+......+|+.+...|.. +++.+++ || ...+.+..|+.++|.+|++..+
T Consensus 220 ~k~---------~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~ 288 (450)
T PRK14087 220 YKE---------KTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEI 288 (450)
T ss_pred CCH---------HHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHH
Confidence 431 123455566655544444455544444543 4677777 55 4677899999999999999876
Q ss_pred cCCC---CCCchhhhHHhHhcCCCchhHHHHHHHHHH
Q 004384 340 KNMK---LSDDVDLERIAKDTHGYVGADLAALCTEAA 373 (757)
Q Consensus 340 ~~~~---l~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 373 (757)
+... ..++..+..++....| ..+.+..++....
T Consensus 289 ~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 289 KNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred HhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 5422 1234457788887776 3455555555544
No 279
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.98 E-value=1.3e-08 Score=119.63 Aligned_cols=132 Identities=26% Similarity=0.366 Sum_probs=86.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh------hhhhccchhHHHH---HHHHHHHHhcCCeEEEEcccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE------IMSKLAGESESNL---RKAFEEAEKNAPSIIFIDEID 261 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~------l~~~~~g~~~~~l---~~vf~~a~~~~p~il~iDEid 261 (757)
....+||.||+.||||+.+..+|.+.+..|+.+|-.+ .++.|+......+ ..++-.|.... -.+++||+.
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELN 965 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELN 965 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccc
Confidence 3456999999999999999999999999999998653 2333332221111 22333444333 388999986
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHhhccc------------CCCeEEEEEecCCCC------CCCHHhhccCCcceEEEe
Q 004384 262 SIAPKREKTHGEVERRIVSQLLTLMDGLK------------SRAHVIVIGATNRPN------SIDPALRRFGRFDREIDI 323 (757)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~------------~~~~v~vI~atn~~~------~ld~~l~r~~rf~~~i~i 323 (757)
..+ ..+++.|..++|.-+ ..+.+.+++|.|+|. .+..++|. || .++++
T Consensus 966 LAp-----------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RF-lE~hF 1031 (4600)
T COG5271 966 LAP-----------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RF-LEMHF 1031 (4600)
T ss_pred cCc-----------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hh-Hhhhc
Confidence 432 135566777776432 345677888888774 45677776 77 45666
Q ss_pred CCCCHHHHHHHHHH
Q 004384 324 GVPDEVGRLEVLRI 337 (757)
Q Consensus 324 ~~p~~~~r~~il~~ 337 (757)
..-.+.+...||..
T Consensus 1032 ddipedEle~ILh~ 1045 (4600)
T COG5271 1032 DDIPEDELEEILHG 1045 (4600)
T ss_pred ccCcHHHHHHHHhc
Confidence 66666777777754
No 280
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.9e-08 Score=107.22 Aligned_cols=199 Identities=23% Similarity=0.341 Sum_probs=125.8
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----EEEEechhhhhhc-
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-----FFCINGPEIMSKL- 232 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~-----~~~v~~~~l~~~~- 232 (757)
.+.+-+++++++..++.-.++. ..|.+++++||||||||++++.++.++... ++++||....+.+
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~---------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG---------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC---------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3778889999988776543322 345569999999999999999999987543 7899985542211
Q ss_pred --------------cchh-HHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEE
Q 004384 233 --------------AGES-ESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVI 296 (757)
Q Consensus 233 --------------~g~~-~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~ 296 (757)
.|.. ......+++.... ....|+++||+|.|....+ .++-.|+...... ..++.
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~--~~~v~ 158 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGEN--KVKVS 158 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccc--ceeEE
Confidence 1111 1223334443333 3456899999999987643 2334444444443 45788
Q ss_pred EEEecCCCC---CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC----CCCCchhhhHHh---HhcCCCchhHHH
Q 004384 297 VIGATNRPN---SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM----KLSDDVDLERIA---KDTHGYVGADLA 366 (757)
Q Consensus 297 vI~atn~~~---~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~----~l~~~~~l~~la---~~t~g~~~~dl~ 366 (757)
+|+.+|..+ .+++.+.+.... .+|.|++++.++-..|+....+.. .+.++ -++.++ ...+| ..+-..
T Consensus 159 vi~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~-vl~lia~~~a~~~G-DAR~ai 235 (366)
T COG1474 159 IIAVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDD-VLKLIAALVAAESG-DARKAI 235 (366)
T ss_pred EEEEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCcc-HHHHHHHHHHHcCc-cHHHHH
Confidence 999998764 667888763222 458999999999999998765432 22222 233333 33333 333344
Q ss_pred HHHHHHHHHHHHh
Q 004384 367 ALCTEAALQCIRE 379 (757)
Q Consensus 367 ~l~~~a~~~~~~~ 379 (757)
.+|+.|+..+-++
T Consensus 236 dilr~A~eiAe~~ 248 (366)
T COG1474 236 DILRRAGEIAERE 248 (366)
T ss_pred HHHHHHHHHHHhh
Confidence 5666666555443
No 281
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=2e-08 Score=112.63 Aligned_cols=188 Identities=19% Similarity=0.223 Sum_probs=123.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC------------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA------------ 218 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~------------ 218 (757)
++++.+|+++.|.+..++.++..+... .-+..+||+||+|+|||++|++++..+..
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~~g------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C 74 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNN------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC 74 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 567789999999999999998887541 12345799999999999999999988732
Q ss_pred ------------eEEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 219 ------------FFFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 219 ------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
.++.+++.. ...-..++.+.+.... ....|++|||+|.+.. ...+.|
T Consensus 75 ~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NAL 137 (535)
T PRK08451 75 IQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNAL 137 (535)
T ss_pred HHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHH
Confidence 122222211 0112345555544321 2235999999987742 234567
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++.... .+.+|.+|+.+..+.+.+++ |. ..+++..++..+-...+...++.-.+. ++..+..++....| .
T Consensus 138 LK~LEEpp~--~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-d 211 (535)
T PRK08451 138 LKTLEEPPS--YVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-S 211 (535)
T ss_pred HHHHhhcCC--ceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-c
Confidence 778876533 45555666777889898988 64 678899999888777776554432221 33457777777765 4
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
.+++..++..+.
T Consensus 212 lR~alnlLdqai 223 (535)
T PRK08451 212 LRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHHHHHH
Confidence 556666655544
No 282
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.98 E-value=2.2e-08 Score=115.37 Aligned_cols=190 Identities=18% Similarity=0.249 Sum_probs=121.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE-------E
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC-------I 223 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~-------v 223 (757)
+.++..|+++.|.+..++.|...+... .-+..+||+||+|+|||++|+++|+.+...... -
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg 76 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCG 76 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCc
Confidence 456778999999999999998887642 113469999999999999999999998652100 0
Q ss_pred ech-----------hh--hhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHh
Q 004384 224 NGP-----------EI--MSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 286 (757)
Q Consensus 224 ~~~-----------~l--~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l 286 (757)
.|. ++ ...........++.++..+.. ....|+||||+|.+-. ...+.|+..+
T Consensus 77 ~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~naLLK~L 145 (620)
T PRK14948 77 KCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNALLKTL 145 (620)
T ss_pred ccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHHHHHHH
Confidence 010 00 001111234566777766543 2346999999998742 2346677777
Q ss_pred hcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC--CCCCchhhhHHhHhcCCCchhH
Q 004384 287 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM--KLSDDVDLERIAKDTHGYVGAD 364 (757)
Q Consensus 287 ~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~l~~~~~l~~la~~t~g~~~~d 364 (757)
+... ..+++|++|+++..+-+.+++ |+ ..+++..+...+-...+....... .+. ...+..++..+.|-. ++
T Consensus 146 EePp--~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~kegi~is-~~al~~La~~s~G~l-r~ 218 (620)
T PRK14948 146 EEPP--PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEKESIEIE-PEALTLVAQRSQGGL-RD 218 (620)
T ss_pred hcCC--cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCCH-HH
Confidence 7533 356667777778888888887 65 557888887776666555444332 222 234677777776643 34
Q ss_pred HHHHHH
Q 004384 365 LAALCT 370 (757)
Q Consensus 365 l~~l~~ 370 (757)
+..++.
T Consensus 219 A~~lLe 224 (620)
T PRK14948 219 AESLLD 224 (620)
T ss_pred HHHHHH
Confidence 434333
No 283
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.98 E-value=2.3e-08 Score=114.53 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=125.8
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEe-----
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCIN----- 224 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~----- 224 (757)
.++++-+|+++.|.+..++.|...+... ..+..+||+||+|+||||+|+++|+.+.+.....+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~~g------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~ 83 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFETG------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI 83 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc
Confidence 3567778999999999999998877641 22457999999999999999999998864321111
Q ss_pred --------chhhhhhc----------cchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 225 --------GPEIMSKL----------AGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 225 --------~~~l~~~~----------~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
|..+.... ....-..++.+++.+.. ....|+||||+|.+.. ...+.|
T Consensus 84 ~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a~naL 152 (598)
T PRK09111 84 DLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AAFNAL 152 (598)
T ss_pred ccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HHHHHH
Confidence 11111000 00113456666665543 2346999999998842 124667
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..|+.... .+.+|.+|+.++.+.+.+++ |+ ..+.+..++..+....+...++..... ++..+..++..+.|.
T Consensus 153 LKtLEePp~--~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gd- 226 (598)
T PRK09111 153 LKTLEEPPP--HVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGS- 226 (598)
T ss_pred HHHHHhCCC--CeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-
Confidence 777776433 45555566777778778876 66 568999999988888877665443322 233466777777664
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
.+++..++..+
T Consensus 227 lr~al~~Ldkl 237 (598)
T PRK09111 227 VRDGLSLLDQA 237 (598)
T ss_pred HHHHHHHHHHH
Confidence 44555544443
No 284
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.97 E-value=1.5e-09 Score=113.61 Aligned_cols=136 Identities=14% Similarity=0.183 Sum_probs=93.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh--ccchhHHH----------HHHHHHHHHhcCCeEEEEc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK--LAGESESN----------LRKAFEEAEKNAPSIIFID 258 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~--~~g~~~~~----------l~~vf~~a~~~~p~il~iD 258 (757)
.+++|+|.||||||||++++.+|..++.+++.+++...... +.|...-. ....+-.|. ..+.++++|
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlD 141 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFD 141 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEec
Confidence 35689999999999999999999999999999987644332 33321100 011222332 345789999
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHHHhhc------------ccCCCeEEEEEecCCCC------------CCCHHhhcc
Q 004384 259 EIDSIAPKREKTHGEVERRIVSQLLTLMDG------------LKSRAHVIVIGATNRPN------------SIDPALRRF 314 (757)
Q Consensus 259 Eid~l~~~~~~~~~~~~~~~~~~Ll~~l~~------------~~~~~~v~vI~atn~~~------------~ld~~l~r~ 314 (757)
|++..-+. +...|..+++. +...+.+.||+|+|... .+++++..
T Consensus 142 Ein~a~p~-----------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD- 209 (327)
T TIGR01650 142 EYDAGRPD-----------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD- 209 (327)
T ss_pred hhhccCHH-----------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh-
Confidence 99977432 22333334331 22334688999999854 34677777
Q ss_pred CCcceEEEeCCCCHHHHHHHHHHHhc
Q 004384 315 GRFDREIDIGVPDEVGRLEVLRIHTK 340 (757)
Q Consensus 315 ~rf~~~i~i~~p~~~~r~~il~~~~~ 340 (757)
||...+.+..|+.+.-.+|+.....
T Consensus 210 -RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 210 -RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred -heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 9988889999999999999876543
No 285
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.5e-08 Score=105.93 Aligned_cols=183 Identities=17% Similarity=0.256 Sum_probs=122.9
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc----------eEEEeC
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN----------FISVKG 498 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~----------~i~v~~ 498 (757)
.|++|.|++.+++.|...+... +.+..+||+||+|+||+++|.++|..+-+. +...+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 5889999999999998886532 234579999999999999999999875221 111122
Q ss_pred ccccccc-----cCc--------------------hhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCc
Q 004384 499 PELLTMW-----FGE--------------------SEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGG 549 (757)
Q Consensus 499 ~~l~~~~-----~g~--------------------~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~ 549 (757)
+|+.--+ -|. .-..+|.+-+.+.. ....|++||++|.+-
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------ 137 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------ 137 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------
Confidence 3322000 011 01245666555433 345899999998862
Q ss_pred chHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHH
Q 004384 550 AADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRAL 629 (757)
Q Consensus 550 ~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~l 629 (757)
....|.||..|+... .. ++|..|+.++.|-|.+.+ |.. .+.|++|+.++..++++........ +.+...+
T Consensus 138 --~~aaNaLLK~LEEPp--~~-~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l 207 (314)
T PRK07399 138 --EAAANALLKTLEEPG--NG-TLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPEL 207 (314)
T ss_pred --HHHHHHHHHHHhCCC--CC-eEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHH
Confidence 456788999998754 33 556667788999999887 875 9999999999999999876432221 1234677
Q ss_pred HHHcCCCCHHHHHHHHH
Q 004384 630 AKYTQGFSGADITEICQ 646 (757)
Q Consensus 630 a~~~~g~sg~di~~~~~ 646 (757)
+..+.| +.+...++++
T Consensus 208 ~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 208 LALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHcCC-CHHHHHHHHH
Confidence 777776 4444444443
No 286
>PRK06620 hypothetical protein; Validated
Probab=98.97 E-value=8.9e-09 Score=103.34 Aligned_cols=132 Identities=16% Similarity=0.277 Sum_probs=88.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG 272 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~ 272 (757)
..++||||||||||+|+++++...+..++. .... ....+ ....+++|||+|.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~-----~~~d~lliDdi~~~~-------- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL-----EKYNAFIIEDIENWQ-------- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH-----hcCCEEEEeccccch--------
Confidence 679999999999999999999887653322 1100 00111 123689999999441
Q ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC--CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhcC--CCCCC
Q 004384 273 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS--IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN--MKLSD 346 (757)
Q Consensus 273 ~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~--ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~~--~~l~~ 346 (757)
. ..|..+++.+...+..++++++..|.. + +.+++ |+. ..+.+..|+.+.+..+++..... +.+.+
T Consensus 99 ---~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ 169 (214)
T PRK06620 99 ---E---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISR 169 (214)
T ss_pred ---H---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 0 245566665555666777777766654 4 77887 553 46899999999999999876543 34444
Q ss_pred chhhhHHhHhcCCC
Q 004384 347 DVDLERIAKDTHGY 360 (757)
Q Consensus 347 ~~~l~~la~~t~g~ 360 (757)
+ .++.++....+-
T Consensus 170 e-v~~~L~~~~~~d 182 (214)
T PRK06620 170 Q-IIDFLLVNLPRE 182 (214)
T ss_pred H-HHHHHHHHccCC
Confidence 3 477888777653
No 287
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.96 E-value=5.3e-09 Score=114.44 Aligned_cols=134 Identities=19% Similarity=0.281 Sum_probs=81.2
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCc-cccccccCch-hHHH--HHHHHHHHhC---CCeEEEEecccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGP-ELLTMWFGES-EANV--REIFDKARQS---APCVLFFDELDS 535 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~-~l~~~~~g~~-e~~i--~~lf~~a~~~---~p~il~iDEid~ 535 (757)
..++||+||||||||++|++++...+. +|..+.+. ......+|.. -... ..-|...... ...++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 466999999999999999999997643 33333221 0011122211 0110 1122221111 234999999975
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCeEEEEeeCCCCC---CCCccccCCCccceEEEecCCC-
Q 004384 536 IATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYIPLPD- 603 (757)
Q Consensus 536 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi~tTn~~~---~ld~allrpgRf~~~i~~~~p~- 603 (757)
+ ...+.+.||..|..-. .....++++|||... ...+|++. ||-..+.+|+|+
T Consensus 119 a--------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~ 182 (498)
T PRK13531 119 A--------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQD 182 (498)
T ss_pred C--------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCc
Confidence 3 4678888998884321 112245566667532 23458888 998899999997
Q ss_pred HHHHHHHHHHh
Q 004384 604 EDSRHQIFKAC 614 (757)
Q Consensus 604 ~~~r~~Il~~~ 614 (757)
.++-.+|++..
T Consensus 183 ~~~e~~lL~~~ 193 (498)
T PRK13531 183 KANFRSMLTSQ 193 (498)
T ss_pred hHHHHHHHHcc
Confidence 46668888764
No 288
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.95 E-value=4.9e-09 Score=109.58 Aligned_cols=66 Identities=33% Similarity=0.535 Sum_probs=46.0
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC--CceEEEeCccccc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 503 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~ 503 (757)
.+.++|+.++++..--.+.. .+ -+.-..+++||.||||||||.||-++|++++ .||..++++++++
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-------Ik-~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-------IK-EGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-------HH-TT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cccccChHHHHHHHHHHHHH-------Hh-cccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 45688999988876443321 11 1333467899999999999999999999997 7999999999875
No 289
>PHA02244 ATPase-like protein
Probab=98.95 E-value=2e-08 Score=106.28 Aligned_cols=123 Identities=26% Similarity=0.359 Sum_probs=78.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccc---hhHH-HHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAG---ESES-NLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g---~~~~-~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
.+.+|+|+||||||||+||+++|..++.+++.+++..-.....| .... .-..++... ....+++|||++.+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~ 195 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDASIPE 195 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcCCHH
Confidence 35679999999999999999999999999998885311111111 0000 111222222 23579999999977532
Q ss_pred CCCCchHHHHHHHHHHHHHhh--------c-ccCCCeEEEEEecCCC-----------CCCCHHhhccCCcceEEEeCCC
Q 004384 267 REKTHGEVERRIVSQLLTLMD--------G-LKSRAHVIVIGATNRP-----------NSIDPALRRFGRFDREIDIGVP 326 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~--------~-~~~~~~v~vI~atn~~-----------~~ld~~l~r~~rf~~~i~i~~p 326 (757)
+...|..+++ + .....++.+|+|+|.+ ..++++++. || ..+++..|
T Consensus 196 -----------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RF-v~I~~dyp 261 (383)
T PHA02244 196 -----------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RF-APIEFDYD 261 (383)
T ss_pred -----------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hc-EEeeCCCC
Confidence 1223333332 1 2233578899999973 466888887 88 46889998
Q ss_pred CHH
Q 004384 327 DEV 329 (757)
Q Consensus 327 ~~~ 329 (757)
...
T Consensus 262 ~~~ 264 (383)
T PHA02244 262 EKI 264 (383)
T ss_pred cHH
Confidence 743
No 290
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.95 E-value=2.4e-10 Score=102.07 Aligned_cols=105 Identities=30% Similarity=0.410 Sum_probs=60.8
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEEeCc-ccc-----cccc-Cc----hhHHHHHHHHHHHhCCCeEEEEecccc
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISVKGP-ELL-----TMWF-GE----SEANVREIFDKARQSAPCVLFFDELDS 535 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v~~~-~l~-----~~~~-g~----~e~~i~~lf~~a~~~~p~il~iDEid~ 535 (757)
++||.|+||+|||++|+++|..++..|.+|.+. ++. +-.+ .. .+-.-..+| ..|+++|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 489999999999999999999999999988763 332 2111 11 111112233 14999999977
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHhhcCC---------CCCCeEEEEeeCCCCC-----CCCccccCCCccc
Q 004384 536 IATQRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFIIGATNRPD-----IIDPALLRPGRLD 594 (757)
Q Consensus 536 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~vi~tTn~~~-----~ld~allrpgRf~ 594 (757)
+..++.+.||..|... .-.+.++||||-|+.+ .|+.|++. ||-
T Consensus 74 --------------appktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 74 --------------APPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp --------------S-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred --------------CCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 3567788888887642 1234689999999876 67778887 773
No 291
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=3.7e-08 Score=112.91 Aligned_cols=183 Identities=17% Similarity=0.239 Sum_probs=115.8
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE--------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF-------- 221 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~-------- 221 (757)
.++++.+|++|.|.+..++.|+..+... .-+..+||+||+||||||+|+.+|+.+....-
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~~------------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRMD------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 3567789999999999999988876541 12345999999999999999999998865210
Q ss_pred ---E-----Eechhhhh-------hccc---hhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHHHHHHH
Q 004384 222 ---C-----INGPEIMS-------KLAG---ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 279 (757)
Q Consensus 222 ---~-----v~~~~l~~-------~~~g---~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 279 (757)
. -.|..+.. .+.+ .....++.+.+.. ......+++|||+|.+... ..
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-----------a~ 144 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-----------AF 144 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-----------HH
Confidence 0 00000000 0011 1123455544443 2233469999999887421 23
Q ss_pred HHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcC
Q 004384 280 SQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTH 358 (757)
Q Consensus 280 ~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~ 358 (757)
+.|+..++.... .+++|.+|+.+..+.+.+++ |. ..+++..++..+-...+...++.... .++..++.++..+.
T Consensus 145 naLLK~LEePp~--~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 145 NAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHHHHHhCCCC--CeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 567777776433 44555556667788888876 54 56889999888877666655443222 23345777887776
Q ss_pred CC
Q 004384 359 GY 360 (757)
Q Consensus 359 g~ 360 (757)
|.
T Consensus 220 Gd 221 (620)
T PRK14954 220 GS 221 (620)
T ss_pred CC
Confidence 63
No 292
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=2.1e-08 Score=110.70 Aligned_cols=176 Identities=18% Similarity=0.229 Sum_probs=111.5
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 219 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------- 219 (757)
+++++..|++|.|.+..++.|+.++... ..+..+||+||+|+||||+|+++|+.+...
T Consensus 8 ~k~RP~~~~eiiGq~~~~~~L~~~~~~~------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~ 75 (397)
T PRK14955 8 RKYRPKKFADITAQEHITRTIQNSLRMG------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQ 75 (397)
T ss_pred HhcCCCcHhhccChHHHHHHHHHHHHhC------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccc
Confidence 3567788999999999999888877641 123459999999999999999999988642
Q ss_pred ----------------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchH
Q 004384 220 ----------------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGE 273 (757)
Q Consensus 220 ----------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~ 273 (757)
++.+++.. ......++.+.+.+. .....++||||+|.+...
T Consensus 76 ~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------- 142 (397)
T PRK14955 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------- 142 (397)
T ss_pred cCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------
Confidence 11111110 011234555444442 223369999999987421
Q ss_pred HHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhH
Q 004384 274 VERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLER 352 (757)
Q Consensus 274 ~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~ 352 (757)
..+.|+..++.... ..++|.+++.+..+.+.+++ |. ..+++..++..+-...+...++.... .++..+..
T Consensus 143 ----~~~~LLk~LEep~~--~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~ 213 (397)
T PRK14955 143 ----AFNAFLKTLEEPPP--HAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADALQL 213 (397)
T ss_pred ----HHHHHHHHHhcCCC--CeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 23456666664332 44555556666777777776 44 35778888887777666655443222 23334677
Q ss_pred HhHhcCC
Q 004384 353 IAKDTHG 359 (757)
Q Consensus 353 la~~t~g 359 (757)
++..+.|
T Consensus 214 l~~~s~g 220 (397)
T PRK14955 214 IGRKAQG 220 (397)
T ss_pred HHHHcCC
Confidence 7777765
No 293
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.93 E-value=3.1e-08 Score=114.47 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=118.4
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE---------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------- 220 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~--------- 220 (757)
+++++.+|++|.|.+..++.|+..+... ..+..+||+||+|+||||+++.+|+.+....
T Consensus 8 ~kyRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 8 RKWRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 3567789999999999999988777541 1234589999999999999999999875321
Q ss_pred ----------------EEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHH
Q 004384 221 ----------------FCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 280 (757)
Q Consensus 221 ----------------~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 280 (757)
+.+++. .......++.+.+.+.. ....|+||||+|.+.. ...+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~------~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~n 138 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAA------SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFN 138 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHH
Confidence 111111 01112334444443322 2346999999987742 1235
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCC
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHG 359 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g 359 (757)
.|+..++... ..+++|.+++..+.+.+.+++ |+ ..+.+..++..+...++........+ .++..+..++..+.|
T Consensus 139 aLLk~LEepp--~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G 213 (585)
T PRK14950 139 ALLKTLEEPP--PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG 213 (585)
T ss_pred HHHHHHhcCC--CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6777776643 245555566667777777776 55 45788888888887777765544332 123346777777765
Q ss_pred CchhHHHHHHH
Q 004384 360 YVGADLAALCT 370 (757)
Q Consensus 360 ~~~~dl~~l~~ 370 (757)
+..++...+.
T Consensus 214 -dlr~al~~Le 223 (585)
T PRK14950 214 -SMRDAENLLQ 223 (585)
T ss_pred -CHHHHHHHHH
Confidence 4444444444
No 294
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.93 E-value=5.4e-10 Score=108.99 Aligned_cols=142 Identities=28% Similarity=0.419 Sum_probs=66.1
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC----------ceEEEeC-
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------NFISVKG- 498 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~----------~~i~v~~- 498 (757)
|.+|.|++.+|..|.-+... ..++||+||||||||++|+.+...+.. ...++.+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 68999999999988765432 257999999999999999999986421 0000111
Q ss_pred ---------ccccccccCchhHHH-H-------HHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHh
Q 004384 499 ---------PELLTMWFGESEANV-R-------EIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 561 (757)
Q Consensus 499 ---------~~l~~~~~g~~e~~i-~-------~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 561 (757)
.-+....-..++..+ . -....|.. .|||+||+-.+ .+.+++.|++-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~---GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHR---GVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTT---SEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcC---CEEEechhhhc--------------CHHHHHHHHHH
Confidence 000000000011000 0 01122222 49999998664 57889999988
Q ss_pred hcCCC-----------CCCeEEEEeeCCC-----------------------CCCCCccccCCCccceEEEecCCCHH
Q 004384 562 MDGMS-----------AKKTVFIIGATNR-----------------------PDIIDPALLRPGRLDQLIYIPLPDED 605 (757)
Q Consensus 562 ld~~~-----------~~~~v~vi~tTn~-----------------------~~~ld~allrpgRf~~~i~~~~p~~~ 605 (757)
|+.-. -..++++|+|+|. ...|...++. |||..+.++..+.+
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--cccccccccccccC
Confidence 86421 1236789999884 1245556676 88888888876654
No 295
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=1.2e-08 Score=108.92 Aligned_cols=148 Identities=19% Similarity=0.273 Sum_probs=101.3
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCC------------------------ceEEEeCccccccccCchhHHHHHHHHH
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 519 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~~e~~i~~lf~~ 519 (757)
.+..+||+||+|+|||++|+++|..+.+ .++.+...+- ++. -+-..+|++-+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 3456999999999999999999987643 1222221100 000 123456665555
Q ss_pred HH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccce
Q 004384 520 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 520 a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~ 595 (757)
+. .....|++||++|.+- ....|.||+.|+.- ..++++|.+|+.++.|.|.+++ |+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEEP--p~~~~fiL~t~~~~~ll~TI~S--Rc~- 158 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEEP--SGDTVLLLISHQPSRLLPTIKS--RCQ- 158 (328)
T ss_pred HhhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhCC--CCCeEEEEEECChhhCcHHHHh--hce-
Confidence 43 3446799999999973 45679999999974 3577888999999999999987 887
Q ss_pred EEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCC
Q 004384 596 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGF 636 (757)
Q Consensus 596 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~ 636 (757)
.+.|++|+.++..+.+...... ..+.+...++..+.|-
T Consensus 159 ~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 159 QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 5999999999888888765311 1222344555666653
No 296
>PRK04132 replication factor C small subunit; Provisional
Probab=98.92 E-value=1.8e-08 Score=118.22 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=114.8
Q ss_pred eeeec--CCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhHHHHHHHHHHHhC------CCeEEEEeccc
Q 004384 468 VLFYG--PPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQS------APCVLFFDELD 534 (757)
Q Consensus 468 ilL~G--ppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~------~p~il~iDEid 534 (757)
-+..| |++.||||+|+++|+++ +.+++.+++++..+ -..++.+.+.+... ...|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 56799999997532 23566665544322 23699999999
Q ss_pred chhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 004384 535 SIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 535 ~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 614 (757)
.+- ....+.|+..|+... .++.+|++||.++.+-+++.+ |+. .+.|++|+.++....++..
T Consensus 641 ~Lt--------------~~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC~-~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 ALT--------------QDAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cCC--------------HHHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 973 345788888888643 467888889999999999887 874 8999999999999888888
Q ss_pred hccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 615 LRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 615 l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
+++.++. .+..+..++..++| +.+..-++++.++
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7765543 23357777777776 4444445554443
No 297
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=6.6e-09 Score=96.61 Aligned_cols=128 Identities=38% Similarity=0.516 Sum_probs=78.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe---EEEEechhhhhh--------------ccchhHHHHHHHHHHHHhcCCeE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSK--------------LAGESESNLRKAFEEAEKNAPSI 254 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~---~~~v~~~~l~~~--------------~~g~~~~~l~~vf~~a~~~~p~i 254 (757)
+..++|+|||||||||+++.++..+... ++.+++...... ...........+++.+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999998765 677776543221 11233455677888888877899
Q ss_pred EEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCCCCHHhhccCCcceEEEeCCC
Q 004384 255 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSIDPALRRFGRFDREIDIGVP 326 (757)
Q Consensus 255 l~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~-~~~ld~~l~r~~rf~~~i~i~~p 326 (757)
+++||++.+........ ....................+|+++|. ....+..+++ |++..+.+..+
T Consensus 82 iiiDei~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEAL-----LLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHH-----HHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 99999998865421100 000000001111122345677778885 3334444444 77777766543
No 298
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.88 E-value=4.7e-08 Score=105.21 Aligned_cols=166 Identities=22% Similarity=0.371 Sum_probs=110.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
...++||||.|+|||+|++++++.. +..++.+...++...+.......-..-|+.-- .-.+++||+++++..+
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk 190 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGK 190 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCC
Confidence 4569999999999999999999876 23577777766665544433332233344443 4469999999999765
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--C
Q 004384 267 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--N 341 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l---d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~ 341 (757)
.. ....+.+.++.+...++-+|+.+...|..+ .+.|++..-....+.+.+|+.+.|..||+.... +
T Consensus 191 ~~---------~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 191 ER---------TQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred hh---------HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 32 235567777776666666666666666655 578887333346789999999999999987543 4
Q ss_pred CCCCCchhhhHHhHhcCCCchhHHHHHHH
Q 004384 342 MKLSDDVDLERIAKDTHGYVGADLAALCT 370 (757)
Q Consensus 342 ~~l~~~~~l~~la~~t~g~~~~dl~~l~~ 370 (757)
+.+.++ -+..++.....- .+++...+.
T Consensus 262 ~~i~~e-v~~~la~~~~~n-vReLegaL~ 288 (408)
T COG0593 262 IEIPDE-VLEFLAKRLDRN-VRELEGALN 288 (408)
T ss_pred CCCCHH-HHHHHHHHhhcc-HHHHHHHHH
Confidence 444444 366676665442 334443333
No 299
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.88 E-value=3.2e-08 Score=104.79 Aligned_cols=162 Identities=21% Similarity=0.249 Sum_probs=106.6
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccC-CCCceeeecCCCCChhHHHHHHHHHhCC-------ceEEEeC----c
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISVKG----P 499 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gilL~GppGtGKT~la~~la~~~~~-------~~i~v~~----~ 499 (757)
++.|+++++.++.+.+..... |.. ..+.++|+|||||||||+|++|+..++. +++.+++ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~--------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQ--------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHh--------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 899999999888876543221 222 2355899999999999999999999865 8888887 4
Q ss_pred cccccccCchhHHHHHHHHHHHhC--------------------------------------------------------
Q 004384 500 ELLTMWFGESEANVREIFDKARQS-------------------------------------------------------- 523 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~-------------------------------------------------------- 523 (757)
.+....++-.....|..|.....-
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi 203 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDI 203 (361)
T ss_pred CCccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccH
Confidence 444333333333333333221110
Q ss_pred ------------------C--------------CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004384 524 ------------------A--------------PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 566 (757)
Q Consensus 524 ------------------~--------------p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 566 (757)
. ..|+-|+|+.+ ...++++.||+.++...
T Consensus 204 ~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K--------------~~~~~l~~LL~~~qE~~v~~~~ 269 (361)
T smart00763 204 SELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFK--------------ADIKFLHPLLTATQEGNIKGTG 269 (361)
T ss_pred HHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhc--------------CCHHHHHHHhhhhhcceEecCC
Confidence 0 02333333322 23567888888877421
Q ss_pred ----CCCeEEEEeeCCCCC-------CCCccccCCCccceEEEecCC-CHHHHHHHHHHhhccC
Q 004384 567 ----AKKTVFIIGATNRPD-------IIDPALLRPGRLDQLIYIPLP-DEDSRHQIFKACLRKS 618 (757)
Q Consensus 567 ----~~~~v~vi~tTn~~~-------~ld~allrpgRf~~~i~~~~p-~~~~r~~Il~~~l~~~ 618 (757)
-.-..+||++||..+ ...+||++ |+. .|++|.| +..+-.+|.+..+...
T Consensus 270 ~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 270 GFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred cccccccceEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 112468999999873 55789999 999 9999977 6788889998888653
No 300
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.4e-08 Score=109.60 Aligned_cols=125 Identities=29% Similarity=0.405 Sum_probs=90.7
Q ss_pred ceeeecCCCCChhHHHHHHHHHhC------------------------CceEEEeCccccccccCchhHHHHHHHHHHHh
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQ------------------------ANFISVKGPELLTMWFGESEANVREIFDKARQ 522 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~------------------------~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~ 522 (757)
.+||+||||+|||++|.++|+.+. ..++.++.++....- -....++.+-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 599999999999999999999876 577888877754321 123345544444332
Q ss_pred ----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEE
Q 004384 523 ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIY 598 (757)
Q Consensus 523 ----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~ 598 (757)
....|+++||+|.+- ....+.++..|+. ...+..+|.+||.++.+-+.+.+ |+. .+.
T Consensus 104 ~~~~~~~kviiidead~mt--------------~~A~nallk~lEe--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~ 164 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLT--------------EDAANALLKTLEE--PPKNTRFILITNDPSKILPTIRS--RCQ-RIR 164 (325)
T ss_pred CCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhcc--CCCCeEEEEEcCChhhccchhhh--cce-eee
Confidence 345799999999974 3556888888876 34577888889999988887776 776 788
Q ss_pred ecCCCHHHHHHHHH
Q 004384 599 IPLPDEDSRHQIFK 612 (757)
Q Consensus 599 ~~~p~~~~r~~Il~ 612 (757)
|++|+...+....+
T Consensus 165 f~~~~~~~~i~~~e 178 (325)
T COG0470 165 FKPPSRLEAIAWLE 178 (325)
T ss_pred cCCchHHHHHHHhh
Confidence 88876655554444
No 301
>PRK09087 hypothetical protein; Validated
Probab=98.87 E-value=4.2e-08 Score=99.40 Aligned_cols=139 Identities=21% Similarity=0.272 Sum_probs=91.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 271 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 271 (757)
...++|+||+|||||+|+++++...+..++ +..++.. .++..... .+++|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i--~~~~~~~-----------~~~~~~~~---~~l~iDDi~~~~~~----- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLI--HPNEIGS-----------DAANAAAE---GPVLIEDIDAGGFD----- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEe--cHHHcch-----------HHHHhhhc---CeEEEECCCCCCCC-----
Confidence 345999999999999999999987665433 3222111 11111111 37999999976311
Q ss_pred hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC---CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC--CCCC
Q 004384 272 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI---DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM--KLSD 346 (757)
Q Consensus 272 ~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l---d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~--~l~~ 346 (757)
...|+++++.....+..+|++++..|..+ .+.+++.......+++..|+.+.|.++++..++.. .+.+
T Consensus 103 -------~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ 175 (226)
T PRK09087 103 -------ETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDP 175 (226)
T ss_pred -------HHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 13466666666565566777776665433 57787733334789999999999999999876543 3333
Q ss_pred chhhhHHhHhcCC
Q 004384 347 DVDLERIAKDTHG 359 (757)
Q Consensus 347 ~~~l~~la~~t~g 359 (757)
..++.+++...+
T Consensus 176 -ev~~~La~~~~r 187 (226)
T PRK09087 176 -HVVYYLVSRMER 187 (226)
T ss_pred -HHHHHHHHHhhh
Confidence 347788877764
No 302
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.87 E-value=1.1e-09 Score=102.60 Aligned_cols=109 Identities=28% Similarity=0.414 Sum_probs=68.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh------hhccch---hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------SKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~------~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
+|+|+||||||||+|++.+|..++.+++.+++.... +.+.-. ....-..+.+... .+++++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 589999999999999999999999999888875432 211110 0000000111111 46899999998653
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhccc-----------CCC------eEEEEEecCCCC----CCCHHhhccCCc
Q 004384 265 PKREKTHGEVERRIVSQLLTLMDGLK-----------SRA------HVIVIGATNRPN----SIDPALRRFGRF 317 (757)
Q Consensus 265 ~~~~~~~~~~~~~~~~~Ll~~l~~~~-----------~~~------~v~vI~atn~~~----~ld~~l~r~~rf 317 (757)
..+...|+.+++.-. ... ++.+|+|+|+.. .+++++++ ||
T Consensus 79 -----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 -----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp -----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred -----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 234555666665311 111 389999999888 88999988 65
No 303
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=4e-08 Score=105.57 Aligned_cols=149 Identities=20% Similarity=0.205 Sum_probs=103.6
Q ss_pred ccccccc-hhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc---------------
Q 004384 429 SWEDIGG-LENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 492 (757)
Q Consensus 429 ~~~~i~g-~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~--------------- 492 (757)
.|+.|.| ++.+.+.|...+.. -+.+..+||+||+|+|||++|+++|..+-+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778877 88899888877642 1334568999999999999999999875321
Q ss_pred ---------eEEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 493 ---------FISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 493 ---------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
+..+... ++.+ .-..++.+-+.+. .....|++|||+|.+ .....|.||
T Consensus 71 ~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~--------------~~~a~NaLL 131 (329)
T PRK08058 71 RIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKM--------------TASAANSLL 131 (329)
T ss_pred HHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhh--------------CHHHHHHHH
Confidence 2222111 0000 1234555554433 233469999999886 245678999
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKA 613 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~ 613 (757)
..|+.. ...+++|.+|+.++.|-|++.+ |.. .++|++|+.++..++++.
T Consensus 132 K~LEEP--p~~~~~Il~t~~~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 132 KFLEEP--SGGTTAILLTENKHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHhcCC--CCCceEEEEeCChHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 999974 3456666678788889899887 876 899999999887777753
No 304
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.86 E-value=7e-09 Score=121.37 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=27.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|||||||+++|++.+
T Consensus 22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~ 51 (638)
T PRK10636 22 ATINPGQKVGLVGKNGCGKSTLLALLKNEI 51 (638)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999975
No 305
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.85 E-value=3.1e-08 Score=112.70 Aligned_cols=164 Identities=20% Similarity=0.237 Sum_probs=97.4
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc-eEEEeCcc---ccc----
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN-FISVKGPE---LLT---- 503 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~-~i~v~~~~---l~~---- 503 (757)
.|.|.+.+|..+.-.+...... ..-....+....++||+|+||+|||++|++++..+... |....+++ +..
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 3567888877765443321111 00011122223369999999999999999999987532 32211111 211
Q ss_pred -cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeE
Q 004384 504 -MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 571 (757)
Q Consensus 504 -~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v 571 (757)
...|+..-.-. .+..|. ..++++||++.+- ......|+..|+.-. -..+.
T Consensus 283 ~~~~g~~~~~~G-~l~~A~---~Gil~iDEi~~l~--------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~ 344 (509)
T smart00350 283 DPETREFTLEGG-ALVLAD---NGVCCIDEFDKMD--------------DSDRTAIHEAMEQQTISIAKAGITTTLNARC 344 (509)
T ss_pred ccCcceEEecCc-cEEecC---CCEEEEechhhCC--------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCc
Confidence 00111000000 111222 2499999999973 344555666664321 12467
Q ss_pred EEEeeCCCCC-------------CCCccccCCCccceEEEe-cCCCHHHHHHHHHHhhc
Q 004384 572 FIIGATNRPD-------------IIDPALLRPGRLDQLIYI-PLPDEDSRHQIFKACLR 616 (757)
Q Consensus 572 ~vi~tTn~~~-------------~ld~allrpgRf~~~i~~-~~p~~~~r~~Il~~~l~ 616 (757)
.||||+|..+ .|++++++ |||..+.+ ..|+.+...+|.++.+.
T Consensus 345 ~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 345 SVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 8999999753 58899998 99986655 78999999999988764
No 306
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.8e-08 Score=111.54 Aligned_cols=195 Identities=23% Similarity=0.300 Sum_probs=129.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE--------EE
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF--------FC 222 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~--------~~ 222 (757)
+.++-.|+|+.|.+.....|+..+..-. -....|+.||.|+||||+||.+|+.+++.- .+
T Consensus 9 KyRP~~F~evvGQe~v~~~L~nal~~~r------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 9 KYRPKTFDDVVGQEHVVKTLSNALENGR------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HhCcccHHHhcccHHHHHHHHHHHHhCc------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 4567789999999999999998887521 123589999999999999999999886531 11
Q ss_pred Eechhhhhh----------ccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 223 INGPEIMSK----------LAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 223 v~~~~l~~~----------~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
..|..+... .....-..++.+.+.+. .....|++|||+|.+... ..+.|+..++.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-----------afNALLKTLEE 145 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-----------AFNALLKTLEE 145 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH-----------HHHHHhccccc
Confidence 111112111 11112344566666543 345679999999988532 33555655554
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHH
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAA 367 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~ 367 (757)
...+|.+|.+|..+..+++.+.+ |. ..+.+...+.++-...|...+..-.+. ++.-+..+++..+| +.+|...
T Consensus 146 --PP~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 146 --PPSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred --CccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 23478888899999999998887 55 446677777777666666665544443 33346777777776 4567777
Q ss_pred HHHHHHH
Q 004384 368 LCTEAAL 374 (757)
Q Consensus 368 l~~~a~~ 374 (757)
++.++..
T Consensus 220 lLDq~i~ 226 (515)
T COG2812 220 LLDQAIA 226 (515)
T ss_pred HHHHHHH
Confidence 7666654
No 307
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.84 E-value=8.6e-09 Score=109.63 Aligned_cols=159 Identities=25% Similarity=0.407 Sum_probs=97.2
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-------e--EEEEe
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------F--FFCIN 224 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-------~--~~~v~ 224 (757)
...|++|.|.++.++.+.-....+ ...++||.|+|||||||+++++++.++. + +..+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 457899999999888765332111 1247999999999999999999999842 1 11111
Q ss_pred c-hhh--------hh---------------hccch--hHHHH---HHHHHHH--HhcCCeEEEEcccccccCCCCCCchH
Q 004384 225 G-PEI--------MS---------------KLAGE--SESNL---RKAFEEA--EKNAPSIIFIDEIDSIAPKREKTHGE 273 (757)
Q Consensus 225 ~-~~l--------~~---------------~~~g~--~~~~l---~~vf~~a--~~~~p~il~iDEid~l~~~~~~~~~~ 273 (757)
+ .+. .. ...|. ....+ ...|+.- ......+||+||++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~-------- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED-------- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH--------
Confidence 0 000 00 01110 00000 0011100 011125899999987643
Q ss_pred HHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCCH-HHHHHHHHHH
Q 004384 274 VERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 338 (757)
Q Consensus 274 ~~~~~~~~Ll~~l~~~~-----------~~~~v~vI~atn~~~-~ld~~l~r~~rf~~~i~i~~p~~-~~r~~il~~~ 338 (757)
.+...|+..|+.-. ....+++++++|..+ .+++++.. ||...+.++.|.. ++|.+++...
T Consensus 143 ---~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 143 ---HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred ---HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHh
Confidence 34466777765321 224688888888654 57888877 8999999998877 8889998764
No 308
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.84 E-value=5.8e-08 Score=105.04 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=25.7
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
+.+.+++.+.|+||+||||||+++++++.
T Consensus 96 ~El~~g~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 96 LELNRGRRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred EEecCCceEEEEcCCCCcHhHHHHHHhcC
Confidence 44577899999999999999999999875
No 309
>PRK13409 putative ATPase RIL; Provisional
Probab=98.83 E-value=2.1e-08 Score=115.69 Aligned_cols=29 Identities=31% Similarity=0.328 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+++.+.|+||+|+|||||++.|++.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~ 124 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELI 124 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 46778899999999999999999998753
No 310
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2.1e-08 Score=105.21 Aligned_cols=99 Identities=28% Similarity=0.487 Sum_probs=76.8
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-ccccCch-hHHHHHHHHHHH----hCCCeEEEEecccchhcc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-~~~~g~~-e~~i~~lf~~a~----~~~p~il~iDEid~l~~~ 539 (757)
.++||.||+|+|||.||+.||+.++.||...++..|. ..|+|+. |.-|..+++.|. +....|+|+||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4699999999999999999999999999999998775 4699986 556677777653 223469999999999854
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcC
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDG 564 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~ 564 (757)
-.+-....+-...-+...||..++|
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 3322222233457788999999987
No 311
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=98.81 E-value=6.7e-09 Score=88.29 Aligned_cols=59 Identities=37% Similarity=0.617 Sum_probs=49.0
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCC--CCCeEEecHhhhhhccccCCCeeEEEecC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTC--EQPKIRMNKVVRSNLRVRLGDVVSVHQCP 61 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~r~~~~~~~g~~v~v~~~~ 61 (757)
|++||+..||+|.|.|. ++ ++|.+||.... +++.|+||..+|+|+|+++||.|+|+++.
T Consensus 25 m~~l~l~~gd~v~i~g~-~~-tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd~V~V~~~~ 85 (87)
T PF02359_consen 25 MEELGLFPGDVVLISGK-RK-TVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGDRVTVRPYD 85 (87)
T ss_dssp HHCTTT-TTEEEEEETT-TE-EEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTSEEEEEEET
T ss_pred HHHcCCCCccEEEEeCC-ce-EEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCCEEEEEECC
Confidence 67899999999999994 34 99999987654 78999999999999999999999999975
No 312
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.81 E-value=2.1e-08 Score=114.84 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888999999999999999999999764
No 313
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.81 E-value=1.4e-07 Score=97.08 Aligned_cols=181 Identities=18% Similarity=0.263 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC---------CeEEEEechh------hhh--------hc--cchhHHHHHHHHH
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETG---------AFFFCINGPE------IMS--------KL--AGESESNLRKAFE 245 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~---------~~~~~v~~~~------l~~--------~~--~g~~~~~l~~vf~ 245 (757)
...++||+|++|.|||++++.++...+ .+++.+..+. +.. .+ .......-..+..
T Consensus 60 Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ 139 (302)
T PF05621_consen 60 RMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLR 139 (302)
T ss_pred CCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHH
Confidence 356799999999999999999987653 2455555421 111 01 0112223344556
Q ss_pred HHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--CCCHHhhccCCcceEEEe
Q 004384 246 EAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDI 323 (757)
Q Consensus 246 ~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~--~ld~~l~r~~rf~~~i~i 323 (757)
..+...+.+|+|||+|.++.... .-.+.+.+.|..+.+.+. -.++.+|+..-.. .-|+.+.+ ||.. +.+
T Consensus 140 llr~~~vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK~L~NeL~--ipiV~vGt~~A~~al~~D~QLa~--RF~~-~~L 210 (302)
T PF05621_consen 140 LLRRLGVRMLIIDEFHNLLAGSY----RKQREFLNALKFLGNELQ--IPIVGVGTREAYRALRTDPQLAS--RFEP-FEL 210 (302)
T ss_pred HHHHcCCcEEEeechHHHhcccH----HHHHHHHHHHHHHhhccC--CCeEEeccHHHHHHhccCHHHHh--ccCC-ccC
Confidence 66677888999999999874321 112233333332222221 2455555443222 23788877 8854 344
Q ss_pred CCCCH-HHHHHHHHHHhcCCCCCCch------hhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhc
Q 004384 324 GVPDE-VGRLEVLRIHTKNMKLSDDV------DLERIAKDTHGYVGADLAALCTEAALQCIREKM 381 (757)
Q Consensus 324 ~~p~~-~~r~~il~~~~~~~~l~~~~------~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 381 (757)
|.-.. ++-..++..+.+.+++.... -...+-..+.|..| ++..++..|+..+++...
T Consensus 211 p~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 211 PRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred CCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcCC
Confidence 43332 33445666666666654322 23566677777765 688888889888887654
No 314
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.81 E-value=4.3e-07 Score=88.79 Aligned_cols=168 Identities=21% Similarity=0.298 Sum_probs=115.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 227 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~ 227 (757)
..+.+.+.+|.|++.+++.+.+--... .+ =.+..+|||+|..|||||+|++++-++. +..++.|+..+
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F------~~---G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQF------AE---GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHH------Hc---CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 345678899999999998875443221 11 1456789999999999999999998876 45678888776
Q ss_pred hhhhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc-cC-CCeEEEEEecCCC
Q 004384 228 IMSKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-KS-RAHVIVIGATNRP 304 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~-~~-~~~v~vI~atn~~ 304 (757)
+.. +-.++...+. ...-|||+|++.+=- ++ .-...|-..+++- .. ..+|++.+|+|+.
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------gd---~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE-------GD---DAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC-------Cc---hHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 642 3334444433 345699999975421 11 1224566666653 22 3478888999987
Q ss_pred CCCCHH--------------------hhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCC
Q 004384 305 NSIDPA--------------------LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSD 346 (757)
Q Consensus 305 ~~ld~~--------------------l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~ 346 (757)
..++.. +.-..||..-+.+..++.++-+.|+..+++...+.-
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 544321 112358999999999999999999998888776653
No 315
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.80 E-value=3e-08 Score=106.89 Aligned_cols=128 Identities=30% Similarity=0.439 Sum_probs=86.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh--hccchhHHHH------------HHHHHHHHhcCCeEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS--KLAGESESNL------------RKAFEEAEKNAPSIIF 256 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~--~~~g~~~~~l------------~~vf~~a~~~~p~il~ 256 (757)
.+.+++|.||||||||+|++.+|..++.+++.++|..-.. ...|...-.. +-+|.... ++++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill 117 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILL 117 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEE
Confidence 3678999999999999999999999999999999863321 1222111110 00111111 4999
Q ss_pred EcccccccCCCCCCchHHHHHHHHHHHHHhhc----------ccCCCeEEEEEecCC-----CCCCCHHhhccCCcceEE
Q 004384 257 IDEIDSIAPKREKTHGEVERRIVSQLLTLMDG----------LKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREI 321 (757)
Q Consensus 257 iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~----------~~~~~~v~vI~atn~-----~~~ld~~l~r~~rf~~~i 321 (757)
+|||+...+ .+.+.|+..|+. +.-...++|++|.|+ ...+++++.+ ||...+
T Consensus 118 ~DEInra~p-----------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 118 LDEINRAPP-----------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred EeccccCCH-----------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 999987643 244667777764 334457888888883 3467888887 898888
Q ss_pred EeCCCCHH-HHHHHH
Q 004384 322 DIGVPDEV-GRLEVL 335 (757)
Q Consensus 322 ~i~~p~~~-~r~~il 335 (757)
.++.|+.. +...++
T Consensus 185 ~v~yp~~~~e~~~i~ 199 (329)
T COG0714 185 YVDYPDSEEEERIIL 199 (329)
T ss_pred ecCCCCchHHHHHHH
Confidence 99999544 444443
No 316
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=2e-07 Score=107.67 Aligned_cols=185 Identities=19% Similarity=0.272 Sum_probs=121.2
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------- 219 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------- 219 (757)
.+.++.+|++|.|.+..++.|...+... ..+..+||+||+|+|||++++.+|..+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3567789999999999999998887641 123458999999999999999999987521
Q ss_pred ---------------EEEEechhhhhhccchhHHHHHHHHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHH
Q 004384 220 ---------------FFCINGPEIMSKLAGESESNLRKAFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVS 280 (757)
Q Consensus 220 ---------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~ 280 (757)
++.+++.+ ......++.++..+.. ....+++|||+|.+.. ...+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~n 139 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFN 139 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHH
Confidence 22222211 0113445666655432 2235999999998842 1346
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
.|+..++.... ..++|.+|+....+-+.+++ |. ..+++..++..+-...+...+....+. +...+..++..+.|
T Consensus 140 aLLK~LEepp~--~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 140 AFLKTLEEPPS--YAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHhCCCC--CeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67888876543 45555666667788888887 55 558888898888777776655443332 22346777777755
Q ss_pred CchhHHHHHH
Q 004384 360 YVGADLAALC 369 (757)
Q Consensus 360 ~~~~dl~~l~ 369 (757)
..+++..++
T Consensus 215 -dlr~al~~L 223 (614)
T PRK14971 215 -GMRDALSIF 223 (614)
T ss_pred -CHHHHHHHH
Confidence 333333333
No 317
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.79 E-value=7.2e-08 Score=111.08 Aligned_cols=132 Identities=23% Similarity=0.301 Sum_probs=90.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCccccccccCchh--HHHH---H-----HHHHHHhCCCeEEEEecc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESE--ANVR---E-----IFDKARQSAPCVLFFDEL 533 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~~e--~~i~---~-----lf~~a~~~~p~il~iDEi 533 (757)
.|+||.|+||||||++|++++..+.. +|+.+.........+|... ..+. . ++..| .-.++|+|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A---~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEA---PRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeC---CCCcEeccch
Confidence 56999999999999999999998754 5887764322233333210 0000 0 11112 1249999999
Q ss_pred cchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeEEEEeeCCCCC---CCCccccCCCccceEEEe
Q 004384 534 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPD---IIDPALLRPGRLDQLIYI 599 (757)
Q Consensus 534 d~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~tTn~~~---~ld~allrpgRf~~~i~~ 599 (757)
+.+- ..+.+.|+..|+.-. ...++.||+|+|..+ .+.++++. ||+.+|.+
T Consensus 94 ~rl~--------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~ 157 (589)
T TIGR02031 94 NLLD--------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSL 157 (589)
T ss_pred hhCC--------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeec
Confidence 9863 566777888776421 123578899999875 78889998 99998877
Q ss_pred c-CCCHHHHHHHHHHhhc
Q 004384 600 P-LPDEDSRHQIFKACLR 616 (757)
Q Consensus 600 ~-~p~~~~r~~Il~~~l~ 616 (757)
. +|+.++|.+|++..+.
T Consensus 158 ~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 6 4577889999988763
No 318
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.79 E-value=1.3e-07 Score=105.35 Aligned_cols=163 Identities=26% Similarity=0.352 Sum_probs=105.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHH--H--hcCCeEEEEcccccccC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA--E--KNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a--~--~~~p~il~iDEid~l~~ 265 (757)
++.+-+||+||||-||||||+.+|...|..++.+|.++-.+. .....++..+.+.- . .+.|..|++||||-..
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~--~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTA--PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccH--HHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 344559999999999999999999999999999998874321 12233444433321 1 2678899999998432
Q ss_pred CCCCCchHHHHHHHHHHHHHhhc--c----cCC-------------CeEEEEEecCCCCCCCHHhhccCCcceEEEeCCC
Q 004384 266 KREKTHGEVERRIVSQLLTLMDG--L----KSR-------------AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVP 326 (757)
Q Consensus 266 ~~~~~~~~~~~~~~~~Ll~~l~~--~----~~~-------------~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p 326 (757)
...+..+++++.. . ... -.--||+.||+. .-|+|+...-|-..+.+..|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f~~p 468 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAFVPP 468 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEecCC
Confidence 3345556665541 0 000 012478889865 46888876668888999999
Q ss_pred CHHHHHHHHHHHhcCCCCCC-chhhhHHhHhcCCCchhHHHHHHHH
Q 004384 327 DEVGRLEVLRIHTKNMKLSD-DVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 327 ~~~~r~~il~~~~~~~~l~~-~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
......+-|+..+.+-.+.. ...+..|++.+.+ |+...+..
T Consensus 469 ~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~----DIRsCINt 510 (877)
T KOG1969|consen 469 SQSRLVERLNEICHRENMRADSKALNALCELTQN----DIRSCINT 510 (877)
T ss_pred ChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHH
Confidence 88777666666554443332 2346666666654 55554443
No 319
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.79 E-value=2.8e-08 Score=116.64 Aligned_cols=30 Identities=20% Similarity=0.454 Sum_probs=27.1
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|||||||+++|++..
T Consensus 24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~ 53 (635)
T PRK11147 24 LHIEDNERVCLVGRNGAGKSTLMKILNGEV 53 (635)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 456788999999999999999999999975
No 320
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.78 E-value=2.4e-07 Score=99.82 Aligned_cols=180 Identities=17% Similarity=0.197 Sum_probs=113.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------EEEE--
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------FFCI-- 223 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~-------~~~v-- 223 (757)
.+-.++++.|+++.++.+...+... .-+..+||+||+|+||||+++.+|..+... ....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 4556888999999999998887642 123359999999999999999999987541 1000
Q ss_pred --ech-----------hhh--h-h--c------cchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHHH
Q 004384 224 --NGP-----------EIM--S-K--L------AGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVE 275 (757)
Q Consensus 224 --~~~-----------~l~--~-~--~------~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~ 275 (757)
.|. ++. . . . ..-....++.+.+.. ......|++|||+|.+-.+
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 110 100 0 0 0 000122344433322 2334569999999988432
Q ss_pred HHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhH
Q 004384 276 RRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 355 (757)
Q Consensus 276 ~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~ 355 (757)
..+.|+..++.... +.++|..|+.++.+.|.+++ |+ ..+.+++|+.++-.+++........ .++..+..++.
T Consensus 157 --aanaLLk~LEEpp~--~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~~ 228 (351)
T PRK09112 157 --AANAILKTLEEPPA--RALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALLQ 228 (351)
T ss_pred --HHHHHHHHHhcCCC--CceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHHH
Confidence 23568888876443 44555556778888899987 77 6899999999999888876432222 12233556666
Q ss_pred hcCCCc
Q 004384 356 DTHGYV 361 (757)
Q Consensus 356 ~t~g~~ 361 (757)
.+.|-.
T Consensus 229 ~s~G~p 234 (351)
T PRK09112 229 RSKGSV 234 (351)
T ss_pred HcCCCH
Confidence 665543
No 321
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.78 E-value=1.2e-07 Score=94.73 Aligned_cols=39 Identities=44% Similarity=0.707 Sum_probs=33.9
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhC--CceEEEeCccccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 503 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~ 503 (757)
.+.+||.||||||||.||-+++.++| .||..+.++++++
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS 104 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYS 104 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhh
Confidence 56799999999999999999999986 5788888887764
No 322
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.78 E-value=4.3e-08 Score=109.98 Aligned_cols=144 Identities=25% Similarity=0.401 Sum_probs=88.7
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCccccc--
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT-- 503 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~-- 503 (757)
..|+++.|+..+++.+.-.+ .....++|+||||||||++++.+++.+.. .-..+....+.+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa---------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA---------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc---------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 36888999988877664432 12346999999999999999999975421 001111111100
Q ss_pred ------------------------cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 504 ------------------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 504 ------------------------~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
..+|.....-...+..|.. .++|+||++.+ ...+++.|+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~--------------~~~~~~~L~ 316 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEF--------------KRSVLDALR 316 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhC--------------CHHHHHHHH
Confidence 0011100000112333433 59999999875 245667777
Q ss_pred HhhcCCC-----------CCCeEEEEeeCCCC-----C------------------CCCccccCCCccceEEEecCCCHH
Q 004384 560 TEMDGMS-----------AKKTVFIIGATNRP-----D------------------IIDPALLRPGRLDQLIYIPLPDED 605 (757)
Q Consensus 560 ~~ld~~~-----------~~~~v~vi~tTn~~-----~------------------~ld~allrpgRf~~~i~~~~p~~~ 605 (757)
+.|+... ...++.+|+|+|.- . .|...++. |||..+.+++++.+
T Consensus 317 ~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~ 394 (499)
T TIGR00368 317 EPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHH
Confidence 7665421 12468899999862 1 47778888 99999999988765
No 323
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.77 E-value=2.6e-08 Score=96.22 Aligned_cols=112 Identities=26% Similarity=0.372 Sum_probs=72.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC----eEEEEechhhhhhccchhHHHHHHHHHH----HHhcCCeEEEEccccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGA----FFFCINGPEIMSKLAGESESNLRKAFEE----AEKNAPSIIFIDEIDS 262 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~----~~~~v~~~~l~~~~~g~~~~~l~~vf~~----a~~~~p~il~iDEid~ 262 (757)
|...++|+||+|||||.+++++|..+.. +++.++++++... ++....+...+.. .......|+|+||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 3456999999999999999999999995 8999999877651 0111111111111 1111123999999999
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHhhccc---------CCCeEEEEEecCCC
Q 004384 263 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRP 304 (757)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---------~~~~v~vI~atn~~ 304 (757)
+.+......+.....+.+.|+.++++-. .-.++++|+|+|--
T Consensus 80 a~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred ccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886433334444567788888886421 12367888888753
No 324
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.76 E-value=2.2e-07 Score=95.73 Aligned_cols=176 Identities=16% Similarity=0.276 Sum_probs=106.0
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---------CCceEEEeCccccc--------------cc-cCc-hhHHHHHHHHHH
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------------MW-FGE-SEANVREIFDKA 520 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~~--------------~~-~g~-~e~~i~~lf~~a 520 (757)
.++||+|++|.|||++++.++... ..|++.+..+.--+ .| ... ..+.-..+....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~ll 141 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLL 141 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHH
Confidence 569999999999999999998764 23667776542211 01 011 122223344555
Q ss_pred HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCC--eEEEEeeCCCCC--CCCccccCCCccceE
Q 004384 521 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKK--TVFIIGATNRPD--IIDPALLRPGRLDQL 596 (757)
Q Consensus 521 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~--~v~vi~tTn~~~--~ld~allrpgRf~~~ 596 (757)
+...+.+|+|||++.++.-+ .+-..++|+.|..+.+.- .++.+||-.-.. .-|+-+-+ ||+ .
T Consensus 142 r~~~vrmLIIDE~H~lLaGs-----------~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~-~ 207 (302)
T PF05621_consen 142 RRLGVRMLIIDEFHNLLAGS-----------YRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFE-P 207 (302)
T ss_pred HHcCCcEEEeechHHHhccc-----------HHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccC-C
Confidence 66778899999999976421 111333444443332222 344455432222 23566666 998 5
Q ss_pred EEecCCC-HHHHHHHHHHhhccCCCCCc--cCH----HHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 597 IYIPLPD-EDSRHQIFKACLRKSPVSKD--VDL----RALAKYTQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 597 i~~~~p~-~~~r~~Il~~~l~~~~~~~~--~d~----~~la~~~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
+.+|.-. .++...++..+-+..|+... ..- ..+-..++|..| ++..+++.|+..|++..
T Consensus 208 ~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG 273 (302)
T PF05621_consen 208 FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNAAAIAAIRSG 273 (302)
T ss_pred ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHhcC
Confidence 5556443 24556677776666665432 222 345567888775 89999999999999876
No 325
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.75 E-value=1.2e-07 Score=103.08 Aligned_cols=120 Identities=28% Similarity=0.469 Sum_probs=72.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe-------EEEEec----hhhhhhccch------hHHHHHHHHHHHHh--cCC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAF-------FFCING----PEIMSKLAGE------SESNLRKAFEEAEK--NAP 252 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~-------~~~v~~----~~l~~~~~g~------~~~~l~~vf~~a~~--~~p 252 (757)
+++++|+||||||||++|+.+|..+... .+.+.. .+++..+... ....+..+++.|.. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 5689999999999999999999887431 122221 2232222111 01123344455544 357
Q ss_pred eEEEEcccccccCCCCCCchHHHHHHHHHHHHHhh--------------------cccCCCeEEEEEecCCCC----CCC
Q 004384 253 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD--------------------GLKSRAHVIVIGATNRPN----SID 308 (757)
Q Consensus 253 ~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~--------------------~~~~~~~v~vI~atn~~~----~ld 308 (757)
.++||||++..-... +...++.+++ .+.-..++.||||+|..+ .+|
T Consensus 274 ~vliIDEINRani~k----------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD 343 (459)
T PRK11331 274 YVFIIDEINRANLSK----------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVD 343 (459)
T ss_pred cEEEEehhhccCHHH----------hhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhcc
Confidence 999999998654221 1112222222 233345899999999886 789
Q ss_pred HHhhccCCcceEEEeC
Q 004384 309 PALRRFGRFDREIDIG 324 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~ 324 (757)
.|++| ||.. +++.
T Consensus 344 ~AlrR--RF~f-i~i~ 356 (459)
T PRK11331 344 YALRR--RFSF-IDIE 356 (459)
T ss_pred HHHHh--hhhe-EEec
Confidence 99999 7743 4444
No 326
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.74 E-value=3.5e-08 Score=113.16 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=26.7
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.+++.+.|+||+|||||||+++|++.+
T Consensus 26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 26 LTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 456788899999999999999999999865
No 327
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.74 E-value=7.4e-08 Score=102.79 Aligned_cols=157 Identities=24% Similarity=0.367 Sum_probs=94.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-------eE--------
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FF-------- 220 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-------~~-------- 220 (757)
.|..|.|.++.+..+.-.+--| ...+++|.|+||+|||||++++++.+.. ++
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 5778999999887764332221 2457999999999999999999988732 11
Q ss_pred -EEEechhh----------------hh--------hccchh--HHHHH---HHHHH--HHhcCCeEEEEcccccccCCCC
Q 004384 221 -FCINGPEI----------------MS--------KLAGES--ESNLR---KAFEE--AEKNAPSIIFIDEIDSIAPKRE 268 (757)
Q Consensus 221 -~~v~~~~l----------------~~--------~~~g~~--~~~l~---~vf~~--a~~~~p~il~iDEid~l~~~~~ 268 (757)
+..+|... .. ...|.. ...++ .+|+. .......+||+||++.+.+
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 11111110 00 111110 00000 00110 0012236999999998742
Q ss_pred CCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCCH-HHHHHHH
Q 004384 269 KTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPDE-VGRLEVL 335 (757)
Q Consensus 269 ~~~~~~~~~~~~~Ll~~l~~~~-----------~~~~v~vI~atn~~~-~ld~~l~r~~rf~~~i~i~~p~~-~~r~~il 335 (757)
.+...|+..|+.-. ...+++++++.|..+ .+.+++.. ||...+.++.|.. ++|.+|+
T Consensus 146 --------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL 215 (337)
T TIGR02030 146 --------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIV 215 (337)
T ss_pred --------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHH
Confidence 24455666664311 123578888887654 68888887 8999999999976 7888888
Q ss_pred HHH
Q 004384 336 RIH 338 (757)
Q Consensus 336 ~~~ 338 (757)
+..
T Consensus 216 ~~~ 218 (337)
T TIGR02030 216 ERR 218 (337)
T ss_pred Hhh
Confidence 753
No 328
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.74 E-value=2.4e-08 Score=113.96 Aligned_cols=30 Identities=33% Similarity=0.511 Sum_probs=27.0
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|+|||||++++++.+
T Consensus 24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 24 LTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 456788999999999999999999999875
No 329
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.73 E-value=3.9e-08 Score=104.79 Aligned_cols=159 Identities=21% Similarity=0.328 Sum_probs=98.3
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-------eEEE-Ee-
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-------FFFC-IN- 224 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-------~~~~-v~- 224 (757)
-.+|++|+|+++.+..+.-....| ...+|||.|++||||||++|+++..+.. +|.. -+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 458999999999888776554332 1247999999999999999999877642 1110 00
Q ss_pred ----chhhhhh-------------------ccchhHHH------HHHHHHHHH---------hcCCeEEEEcccccccCC
Q 004384 225 ----GPEIMSK-------------------LAGESESN------LRKAFEEAE---------KNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 225 ----~~~l~~~-------------------~~g~~~~~------l~~vf~~a~---------~~~p~il~iDEid~l~~~ 266 (757)
+.+.... ..+..+.. +...|.... .....+||+||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 0000000 00111111 111121111 112369999999987532
Q ss_pred CCCCchHHHHHHHHHHHHHhhcc-----------cCCCeEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCC-HHHHHH
Q 004384 267 REKTHGEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLE 333 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~-----------~~~~~v~vI~atn~~~-~ld~~l~r~~rf~~~i~i~~p~-~~~r~~ 333 (757)
+...|+..|+.- ....+++++++.|..+ .+.+++.. ||...+.+..|. .+.+.+
T Consensus 160 -----------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 160 -----------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred -----------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHH
Confidence 335566666431 1224678888777654 58888887 999999999998 588999
Q ss_pred HHHHH
Q 004384 334 VLRIH 338 (757)
Q Consensus 334 il~~~ 338 (757)
|++..
T Consensus 227 il~~~ 231 (350)
T CHL00081 227 IVEQR 231 (350)
T ss_pred HHHhh
Confidence 98754
No 330
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=4.9e-08 Score=104.12 Aligned_cols=133 Identities=18% Similarity=0.244 Sum_probs=93.9
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCCc-------------------------eEEEeCccccc--------cc----
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQAN-------------------------FISVKGPELLT--------MW---- 505 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~~-------------------------~i~v~~~~l~~--------~~---- 505 (757)
+.+.++||+||+|+||+++|+++|..+.+. +..+....... .|
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 456779999999999999999999876331 11121110000 00
Q ss_pred --cC---------chhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCe
Q 004384 506 --FG---------ESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 570 (757)
Q Consensus 506 --~g---------~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 570 (757)
-| -.-..+|.+.+.+. .....|++||++|.+- ...-|.||+.|+. ...+
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLEE--PPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCcC
Confidence 00 01234565555433 3345699999999973 4567999999995 5567
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHh
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~ 614 (757)
+++|.+|++|+.|.|.+++ |+ ..+.|++|+.++..+.+...
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 8999999999999999987 88 59999999999988888654
No 331
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.73 E-value=1.7e-07 Score=107.46 Aligned_cols=200 Identities=13% Similarity=0.185 Sum_probs=114.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEE-EeCcc---c-
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPE---L- 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~-v~~~~---l- 501 (757)
...++++.|.++..+.+..++.... ++..+.+-++|+||||||||++++++|++++..++. ++... .
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 4567889999988887776654211 122333459999999999999999999998765433 11110 0
Q ss_pred ------------cccccCchhHHHHHHHHHHHh----------CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 502 ------------LTMWFGESEANVREIFDKARQ----------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 502 ------------~~~~~g~~e~~i~~lf~~a~~----------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
+..+ .......+.+...+.. ....|||+||++.+... ..+.+..+|
T Consensus 152 ~~~~~~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~~~~lq~lL 219 (637)
T TIGR00602 152 NDHKVTLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------DTRALHEIL 219 (637)
T ss_pred cccccchhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------hHHHHHHHH
Confidence 0111 1122334455555542 24579999999987531 122344444
Q ss_pred H-hhcCCCCCCeE-EEEeeCCCCC--------------CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC--C
Q 004384 560 T-EMDGMSAKKTV-FIIGATNRPD--------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV--S 621 (757)
Q Consensus 560 ~-~ld~~~~~~~v-~vi~tTn~~~--------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~--~ 621 (757)
. .... ...+ +|+++|..|. .|.++++..-|.. +|.|++.+.....+.|+..+++... .
T Consensus 220 r~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~-~I~FnPia~t~l~K~L~rIl~~E~~~~~ 295 (637)
T TIGR00602 220 RWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVS-NISFNPIAPTIMKKFLNRIVTIEAKKNG 295 (637)
T ss_pred HHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhccccee-EEEeCCCCHHHHHHHHHHHHHhhhhccc
Confidence 4 2211 2223 3333331121 1336676312443 8999999999988888877765321 1
Q ss_pred C------ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 622 K------DVDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 622 ~------~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
. ...+..++. .+++||+.++..-...+.+
T Consensus 296 ~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~ 330 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSK 330 (637)
T ss_pred cccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhc
Confidence 1 123455555 3556998887766665543
No 332
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.72 E-value=5.8e-08 Score=111.62 Aligned_cols=30 Identities=13% Similarity=0.340 Sum_probs=27.0
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|||||||+++|++..
T Consensus 21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 456788899999999999999999999975
No 333
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.72 E-value=4.3e-08 Score=112.05 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.+++.+.|+||+|+|||||++++++.+
T Consensus 25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 25 LNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred EEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999875
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.70 E-value=8.8e-07 Score=92.78 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=76.8
Q ss_pred cCCCCceeeecCCCCChhHHHHHHHHHhCC-ceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhccc
Q 004384 462 MSPSKGVLFYGPPGCGKTLLAKAIANECQA-NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 540 (757)
Q Consensus 462 ~~~~~gilL~GppGtGKT~la~~la~~~~~-~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r 540 (757)
+.+...+-++|.+||||||+.+++...... .-|.+.|.++.. .+.+..+-+-. .-.++|=|-..+|.++-
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~----~~~~~mrplR~-----~mQvVFQDPygSLsPRm 380 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG----LSRKEMRPLRR-----RMQVVFQDPYGSLSPRM 380 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc----cChhhhhhhhh-----hceEEEeCCCCCCCccc
Confidence 344555999999999999999999987643 567777777643 33443332222 22488989888875532
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC
Q 004384 541 GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 620 (757)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 620 (757)
.+.++..| .+ .|+=|.++..+|.+-....+++.++
T Consensus 381 -------------tV~qII~E------------------------GL--------~vh~~~ls~~eR~~rv~~aL~EVGL 415 (534)
T COG4172 381 -------------TVGQIIEE------------------------GL--------RVHEPKLSAAERDQRVIEALEEVGL 415 (534)
T ss_pred -------------CHHHHhhh------------------------hh--------hhcCCCCCHHHHHHHHHHHHHHcCC
Confidence 12233222 11 2334455667777777777766654
Q ss_pred CCccCHHHHHHHcCCCCHHHHHHH
Q 004384 621 SKDVDLRALAKYTQGFSGADITEI 644 (757)
Q Consensus 621 ~~~~d~~~la~~~~g~sg~di~~~ 644 (757)
+ -....++...|||+.=+.+
T Consensus 416 D----p~~r~RYPhEFSGGQRQRI 435 (534)
T COG4172 416 D----PATRNRYPHEFSGGQRQRI 435 (534)
T ss_pred C----hhHhhcCCcccCcchhhHH
Confidence 3 3455566666777765543
No 335
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.70 E-value=7.2e-08 Score=110.36 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=26.8
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|+|||||+++|++.+
T Consensus 32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788889999999999999999999875
No 336
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.70 E-value=5.2e-07 Score=102.15 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=54.5
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccc------cC----------------------ch
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW------FG----------------------ES 509 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~------~g----------------------~~ 509 (757)
|+.+...+|+.||||+|||+|+..++... +.+.+++...+-.... +| ..
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 67777779999999999999999887754 4455555543321110 00 11
Q ss_pred hHHHHHHHHHHHhCCCeEEEEecccchhc
Q 004384 510 EANVREIFDKARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 510 e~~i~~lf~~a~~~~p~il~iDEid~l~~ 538 (757)
+..+..+.+......|.+++||=+..+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 45567777888888899999999988754
No 337
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.70 E-value=5.4e-08 Score=111.02 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=27.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+.+++.+.|+||+|+|||||++++++.+
T Consensus 18 s~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 18 NLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3456788899999999999999999999875
No 338
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.69 E-value=2.9e-07 Score=90.94 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=91.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 247 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 247 (757)
+..+||+||+|+|||++++.++..+... +..+... .. .-....++.+.+.+
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~--~~~~~~i~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQ--SIKVDQVRELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cC--cCCHHHHHHHHHHH
Confidence 4569999999999999999999887431 1111110 00 01124455555554
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 004384 248 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 323 (757)
Q Consensus 248 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i 323 (757)
.. ....+++|||+|.+... ..+.|+..++.... ...+|.+++.+..+.+++++ |. ..+.+
T Consensus 89 ~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~--~~~~il~~~~~~~l~~~i~s--r~-~~~~~ 152 (188)
T TIGR00678 89 SRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPP--NTLFILITPSPEKLLPTIRS--RC-QVLPF 152 (188)
T ss_pred ccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCC--CeEEEEEECChHhChHHHHh--hc-EEeeC
Confidence 43 34569999999887432 23567777776432 44555566677889999987 66 57999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCC
Q 004384 324 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 359 (757)
Q Consensus 324 ~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g 359 (757)
..|+..+..+++... + + ++..+..++..+.|
T Consensus 153 ~~~~~~~~~~~l~~~--g--i-~~~~~~~i~~~~~g 183 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G--I-SEEAAELLLALAGG 183 (188)
T ss_pred CCCCHHHHHHHHHHc--C--C-CHHHHHHHHHHcCC
Confidence 999999988888765 1 2 22335555555544
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=98.68 E-value=4.9e-08 Score=114.88 Aligned_cols=33 Identities=30% Similarity=0.315 Sum_probs=28.0
Q ss_pred hHh--hhCCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 004384 183 LFK--SIGVKPPKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 183 ~~~--~l~i~~~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
+++ ++.+.++..+.|+||+|||||||+++|++.
T Consensus 192 ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 192 LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 444 445678889999999999999999999974
No 340
>PRK08116 hypothetical protein; Validated
Probab=98.68 E-value=4.1e-08 Score=102.03 Aligned_cols=123 Identities=24% Similarity=0.264 Sum_probs=75.8
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccccc----CchhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF----GESEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~----g~~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
..|++|+|++|||||+||.++|+++ +.+++.++.++++..+. +.+......+++..... .+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~--dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNA--DLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCC--CEEEEecccCCC
Confidence 3579999999999999999999985 67788888887765432 11112223344443333 599999986521
Q ss_pred cccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC-CC----CCccccCCCcc---ceEEEecCCCH
Q 004384 538 TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DI----IDPALLRPGRL---DQLIYIPLPDE 604 (757)
Q Consensus 538 ~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~-~~----ld~allrpgRf---~~~i~~~~p~~ 604 (757)
..+.....|...++..... +..+|.|||.+ +. ++..+.. |+ ...|.++-||.
T Consensus 192 ------------~t~~~~~~l~~iin~r~~~-~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 ------------DTEWAREKVYNIIDSRYRK-GLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred ------------CCHHHHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1233445555555543222 23477777764 33 4556665 64 34566666664
No 341
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=5.3e-07 Score=96.55 Aligned_cols=169 Identities=12% Similarity=0.186 Sum_probs=107.9
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--------EEEEechh
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--------FFCINGPE 227 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--------~~~v~~~~ 227 (757)
+|++|.|++..++.+...+... .-+..+||+||+|+|||++|+.+|..+... +..+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKN------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcC------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 5789999999999988877531 123458999999999999999999976321 22222110
Q ss_pred hhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 228 IMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
+. .-.-..++.+.+.+ ......|++||++|.+-. ...+.|+..++... .++++|.+|+.
T Consensus 70 --~~--~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-----------~a~naLLK~LEepp--~~t~~il~~~~ 132 (313)
T PRK05564 70 --KK--SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-----------QAQNAFLKTIEEPP--KGVFIILLCEN 132 (313)
T ss_pred --CC--CCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCC--CCeEEEEEeCC
Confidence 01 01123455555433 233446999999887732 23467888887643 34555556677
Q ss_pred CCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCC
Q 004384 304 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHG 359 (757)
Q Consensus 304 ~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g 359 (757)
++.+-+.+++ |. ..+.+..|+.++-...+...... . ....+..++..+.|
T Consensus 133 ~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g 182 (313)
T PRK05564 133 LEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDG 182 (313)
T ss_pred hHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCC
Confidence 8899899988 55 57889999988877777644321 1 22234445555544
No 342
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=1.7e-07 Score=108.01 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=27.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|||||||+++|++.+
T Consensus 22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 22 VKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999875
No 343
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=5.5e-08 Score=98.50 Aligned_cols=96 Identities=35% Similarity=0.549 Sum_probs=71.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh-hhccchh-HHHHHHHHHHHH----hcCCeEEEEcccccccCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGES-ESNLRKAFEEAE----KNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~-~~~~g~~-~~~l~~vf~~a~----~~~p~il~iDEid~l~~~ 266 (757)
.+|||+||+|||||.||+.||+.++.+|..-++..+. ..|+|+. +..+..+++.+. .....|++|||||.+..+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 5699999999999999999999999999888877664 3677764 444556666543 234579999999999987
Q ss_pred CCCCc---hHHHHHHHHHHHHHhhc
Q 004384 267 REKTH---GEVERRIVSQLLTLMDG 288 (757)
Q Consensus 267 ~~~~~---~~~~~~~~~~Ll~~l~~ 288 (757)
..+++ +--..-+...|+.++++
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiEG 202 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIEG 202 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHcC
Confidence 65432 11224566778888876
No 344
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.67 E-value=1e-07 Score=91.42 Aligned_cols=134 Identities=26% Similarity=0.360 Sum_probs=87.2
Q ss_pred chhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC-----------------------
Q 004384 435 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA----------------------- 491 (757)
Q Consensus 435 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~----------------------- 491 (757)
|++.+.+.|...+.. -..+..+||+||+|+||+++|.++|..+-.
T Consensus 1 gq~~~~~~L~~~~~~------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHC------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHc------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 566777777766542 134556999999999999999999987521
Q ss_pred ceEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC
Q 004384 492 NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA 567 (757)
Q Consensus 492 ~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~ 567 (757)
.++.++..+-.. .-....++.+.+.+.. ....|++|||+|.+ .....|.||..|+..
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEep-- 129 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEEP-- 129 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHST--
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcCC--
Confidence 233333222100 0123556666666543 34579999999996 357789999999974
Q ss_pred CCeEEEEeeCCCCCCCCccccCCCccceEEEecCC
Q 004384 568 KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 602 (757)
Q Consensus 568 ~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p 602 (757)
..++++|.+|+.++.|-|.+++ |.- .+.|++.
T Consensus 130 p~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 130 PENTYFILITNNPSKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp TTTEEEEEEES-GGGS-HHHHT--TSE-EEEE---
T ss_pred CCCEEEEEEECChHHChHHHHh--hce-EEecCCC
Confidence 4578888888889988888887 775 6666654
No 345
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1.3e-06 Score=92.60 Aligned_cols=128 Identities=19% Similarity=0.302 Sum_probs=91.5
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCC------------------------ceEEEeCccccccccCchhHHHHHHHHH
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFDK 519 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~~e~~i~~lf~~ 519 (757)
.+.++||+||.|+||+++|+++|..+-+ .++.+...+ ++.+ .-..+|.+-+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHHH
Confidence 3457999999999999999999987522 122222110 1111 23345555444
Q ss_pred H----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccce
Q 004384 520 A----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 520 a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~ 595 (757)
+ ......|++||++|.+- ....|.||+.|+. +..++++|.+|+.++.|-|.+++ |..
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~- 159 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ- 159 (325)
T ss_pred HhhccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-
Confidence 3 34445799999999973 4567999999997 45577888888889999999887 886
Q ss_pred EEEecCCCHHHHHHHHHHh
Q 004384 596 LIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 596 ~i~~~~p~~~~r~~Il~~~ 614 (757)
.+.|++|+.++..+.+...
T Consensus 160 ~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 7899999998887777654
No 346
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=1e-06 Score=95.48 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=104.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE------------
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF------------ 220 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~------------ 220 (757)
.+-.+++|.|+++.++.+.+.+... .-+..+||+||+|+||+++|.++|..+-..-
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 4557889999999999998887652 1234699999999999999999998763210
Q ss_pred -E--EEec-----------hhhh--hh---ccc------hhHHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCc
Q 004384 221 -F--CING-----------PEIM--SK---LAG------ESESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH 271 (757)
Q Consensus 221 -~--~v~~-----------~~l~--~~---~~g------~~~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~ 271 (757)
. .-.| +++. .. ..+ -.-..++.+.+.. ....+.|++|||+|.+-.
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 0 0000 0100 00 000 0123345544432 235678999999987732
Q ss_pred hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHH
Q 004384 272 GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 338 (757)
Q Consensus 272 ~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 338 (757)
...+.|+..++... ...++|.+|+.++.+.+.+++ |. ..+.++.|+.++-.+++...
T Consensus 156 -----~aanaLLK~LEepp--~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 156 -----NAANALLKVLEEPP--ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred -----HHHHHHHHHHhcCC--CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHh
Confidence 23466777777543 355666788888888888876 65 67899999999888888754
No 347
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.66 E-value=2.9e-07 Score=102.83 Aligned_cols=143 Identities=27% Similarity=0.377 Sum_probs=88.4
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc--eEEEeCccccc---
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--FISVKGPELLT--- 503 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~--~i~v~~~~l~~--- 503 (757)
.+.++.|...+++.+.-. ......++|+||||||||++++.+++.+... -..+....+.+
T Consensus 189 d~~~v~Gq~~~~~al~la---------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT---------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred CeEEEECcHHHHhhhhee---------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 455666776666543211 1233569999999999999999999865311 01111111110
Q ss_pred -----------c------------ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHH
Q 004384 504 -----------M------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 560 (757)
Q Consensus 504 -----------~------------~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 560 (757)
. .+|.....-...+..|... ++|+||++.+ ...+++.|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~--------------~~~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEF--------------ERRTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhC--------------CHHHHHHHHH
Confidence 0 1111111112345555554 9999999774 3466777777
Q ss_pred hhcCCC-----------CCCeEEEEeeCCCCC---------------------CCCccccCCCccceEEEecCCCHH
Q 004384 561 EMDGMS-----------AKKTVFIIGATNRPD---------------------IIDPALLRPGRLDQLIYIPLPDED 605 (757)
Q Consensus 561 ~ld~~~-----------~~~~v~vi~tTn~~~---------------------~ld~allrpgRf~~~i~~~~p~~~ 605 (757)
.|+.-. ...++.+|+|+|... .|..+++. |||..+.+++|+.+
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 775421 134688999999742 46778888 99999999998765
No 348
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.65 E-value=1.2e-07 Score=108.50 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=27.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.++..+.|+||+|+|||||+++|++.+.
T Consensus 22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 22 LEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888999999999999999999998764
No 349
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.65 E-value=3.5e-07 Score=104.81 Aligned_cols=63 Identities=16% Similarity=0.367 Sum_probs=50.2
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF 220 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~ 220 (757)
+++.+..++++.|.++.++.++.++.-. .++..+++.++|+|||||||||+++++|++++..+
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 3567788999999999999988887531 11234556799999999999999999999887543
No 350
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.65 E-value=1.7e-06 Score=89.17 Aligned_cols=63 Identities=38% Similarity=0.641 Sum_probs=43.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhh
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 228 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~--~~~~~v~~~~l 228 (757)
+.++|+.++.+..--++.+ .+ -+-..+++||+.||||||||.||-.+|.++| .+|..++++++
T Consensus 39 dG~VGQ~~AReAaGvIv~m-------ik-~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEi 103 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKM-------IK-QGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEI 103 (450)
T ss_pred CcccchHHHHHhhhHHHHH-------HH-hCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeecccee
Confidence 4578888776664333332 11 1334689999999999999999999999997 34555554443
No 351
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=1e-06 Score=95.00 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=67.9
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh--CCeE-EEEe-----------------------------c---hhhhh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET--GAFF-FCIN-----------------------------G---PEIMS 230 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l--~~~~-~~v~-----------------------------~---~~l~~ 230 (757)
++.+..++...|+|++|+|||||+|+||.-- +.+. -.+. + .++..
T Consensus 100 ~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~ 179 (582)
T KOG0062|consen 100 NLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYD 179 (582)
T ss_pred ceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHH
Confidence 3455678889999999999999999999811 0000 0000 0 11111
Q ss_pred h--------------ccc--hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004384 231 K--------------LAG--ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 294 (757)
Q Consensus 231 ~--------------~~g--~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 294 (757)
+ ..+ ....+++..+..|.-..|++|++|| +.+.++-..+.+|-+.+..+.
T Consensus 180 ~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDE----------PTNhLDv~av~WLe~yL~t~~---- 245 (582)
T KOG0062|consen 180 KILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDE----------PTNHLDVVAVAWLENYLQTWK---- 245 (582)
T ss_pred HHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecC----------CcccchhHHHHHHHHHHhhCC----
Confidence 0 000 0124566777888889999999999 556666666777777776554
Q ss_pred EEEEEecCCCCCCC
Q 004384 295 VIVIGATNRPNSID 308 (757)
Q Consensus 295 v~vI~atn~~~~ld 308 (757)
+.+|..+++..-+|
T Consensus 246 ~T~liVSHDr~FLn 259 (582)
T KOG0062|consen 246 ITSLIVSHDRNFLN 259 (582)
T ss_pred ceEEEEeccHHHHH
Confidence 45555667655444
No 352
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.64 E-value=1.4e-07 Score=101.17 Aligned_cols=193 Identities=24% Similarity=0.255 Sum_probs=111.5
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc---
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--- 503 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~--- 503 (757)
+++++|.....+.+.+.+.... .....|+|.|++||||+++|+++.... +.+|+.++|..+..
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3456666655555544433211 123459999999999999999998765 36899999987531
Q ss_pred --cccCchh-------HHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--C-----
Q 004384 504 --MWFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--A----- 567 (757)
Q Consensus 504 --~~~g~~e-------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--~----- 567 (757)
.++|... ......|..|. ...+|||||+.+. ..+...|+..|+.-. .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~--------------~~~Q~~L~~~l~~~~~~~~g~~~ 136 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAP--------------MLVQEKLLRVIEYGELERVGGSQ 136 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCc
Confidence 1122110 00112334443 3489999999974 344555666554321 0
Q ss_pred --CCeEEEEeeCCCC-------CCCCccccCCCcc-ceEEEecCCCH--HHHHHHHHHhhcc----CCCC--CccCHHH-
Q 004384 568 --KKTVFIIGATNRP-------DIIDPALLRPGRL-DQLIYIPLPDE--DSRHQIFKACLRK----SPVS--KDVDLRA- 628 (757)
Q Consensus 568 --~~~v~vi~tTn~~-------~~ld~allrpgRf-~~~i~~~~p~~--~~r~~Il~~~l~~----~~~~--~~~d~~~- 628 (757)
..++-||+||+.. ..+.+.|.. || ...|.+|+.-. ++...+++.++.+ .+.. ..++-+.
T Consensus 137 ~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al 214 (326)
T PRK11608 137 PLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERAR 214 (326)
T ss_pred eeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 1247788888763 244556665 77 45677776643 4556666666533 2221 2233333
Q ss_pred --HHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 629 --LAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 629 --la~~~~g~sg~di~~~~~~a~~~a 652 (757)
|..+.-=-+-++++++++.|+..+
T Consensus 215 ~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 215 ETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 333321125689999998887654
No 353
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.63 E-value=1.1e-07 Score=102.19 Aligned_cols=201 Identities=21% Similarity=0.283 Sum_probs=124.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----CCceEEEeCcccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELL 502 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~ 502 (757)
...+.+++|...--+.+.+.+.. + -+....+|++|++||||+.+|++|...+ ..||+.+||..+.
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~-------~----ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA-------Y----APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh-------h----CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 34566777766555555544432 0 0123459999999999999999997543 5699999998765
Q ss_pred cc-------------ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---
Q 004384 503 TM-------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--- 566 (757)
Q Consensus 503 ~~-------------~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--- 566 (757)
.. |.| ....-..+|+.|... .+|+|||..+. ......++..||...
T Consensus 143 en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~GG---tLfLDEI~~LP--------------~~~Q~kLl~~le~g~~~r 204 (403)
T COG1221 143 ENLQEAELFGHEKGAFTG-AQGGKAGLFEQANGG---TLFLDEIHRLP--------------PEGQEKLLRVLEEGEYRR 204 (403)
T ss_pred cCHHHHHHhccccceeec-ccCCcCchheecCCC---EEehhhhhhCC--------------HhHHHHHHHHHHcCceEe
Confidence 32 223 233344677777665 99999998874 345566777776522
Q ss_pred ------CCCeEEEEeeCCC--CCCCCc--cccCCCccceEEEecCCCH--HHHHHHHHHhh----ccCCCCCccCHHHHH
Q 004384 567 ------AKKTVFIIGATNR--PDIIDP--ALLRPGRLDQLIYIPLPDE--DSRHQIFKACL----RKSPVSKDVDLRALA 630 (757)
Q Consensus 567 ------~~~~v~vi~tTn~--~~~ld~--allrpgRf~~~i~~~~p~~--~~r~~Il~~~l----~~~~~~~~~d~~~la 630 (757)
-..+|-+|+|||- ++.+-. .+.|. |+...|.+|+.-+ +++..+.+.++ ++.......+.....
T Consensus 205 vG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~ 283 (403)
T COG1221 205 VGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR-LNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEAL 283 (403)
T ss_pred cCCCCCcCCCceeeeccccCHHHHHHhhcchhhh-hcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHH
Confidence 1246888888874 233333 44431 6667778877654 44555555555 344443333332222
Q ss_pred HHcCCC----CHHHHHHHHHHHHHHHHHHHH
Q 004384 631 KYTQGF----SGADITEICQRACKYAIRENI 657 (757)
Q Consensus 631 ~~~~g~----sg~di~~~~~~a~~~a~~~~~ 657 (757)
+....| +-+++++++..++..+....+
T Consensus 284 ~~L~~y~~pGNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 284 RALLAYDWPGNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHHhccccC
Confidence 222112 668999999999988865443
No 354
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.62 E-value=9.1e-08 Score=110.19 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.5
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 30 LQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4567889999999999999999999999864
No 355
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.62 E-value=1.1e-07 Score=102.05 Aligned_cols=168 Identities=21% Similarity=0.270 Sum_probs=100.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccc-----cCchh-------HHHHHHHHHHHhCCCeEEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLFF 530 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~~e-------~~i~~lf~~a~~~~p~il~i 530 (757)
..|||.|++||||+++|+++...+ +.+|+.++|..+.... +|... ..-...|..|. ...|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~---gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERAD---GGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCC---CCEEEe
Confidence 459999999999999999998765 3699999998653211 11100 00112344443 359999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------CCCeEEEEeeCCCC-------CCCCccccCCCccc
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS---------AKKTVFIIGATNRP-------DIIDPALLRPGRLD 594 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~---------~~~~v~vi~tTn~~-------~~ld~allrpgRf~ 594 (757)
|||+.+. ..+...|+..|+.-. ...++-||++||.. ..+.+.|.. ||.
T Consensus 100 dei~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~ 163 (329)
T TIGR02974 100 DELATAS--------------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLA 163 (329)
T ss_pred CChHhCC--------------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--Hhc
Confidence 9999973 345566666664321 12357788888763 234455555 674
Q ss_pred -eEEEecCCC--HHHHHHHHHHhhcc----CCCC--CccCHH---HHHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 595 -QLIYIPLPD--EDSRHQIFKACLRK----SPVS--KDVDLR---ALAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 595 -~~i~~~~p~--~~~r~~Il~~~l~~----~~~~--~~~d~~---~la~~~~g~sg~di~~~~~~a~~~a 652 (757)
..|.+|+.. .++...+++.++.+ .+.. ..++-+ .|..+.---+-+++++++..|+..+
T Consensus 164 ~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 164 FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 456676664 24556666666543 2222 223333 3333331225689999998887765
No 356
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.62 E-value=1.1e-07 Score=108.81 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=26.7
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|+|||||+++|++.+
T Consensus 25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 54 (501)
T PRK11288 25 FDCRAGQVHALMGENGAGKSTLLKILSGNY 54 (501)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999865
No 357
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.4e-07 Score=93.50 Aligned_cols=82 Identities=27% Similarity=0.497 Sum_probs=60.7
Q ss_pred eEEEEcccccccCCCCCCchHHH-HHHHHHHHHHhhccc--------CCCeEEEEEec----CCCCCCCHHhhccCCcce
Q 004384 253 SIIFIDEIDSIAPKREKTHGEVE-RRIVSQLLTLMDGLK--------SRAHVIVIGAT----NRPNSIDPALRRFGRFDR 319 (757)
Q Consensus 253 ~il~iDEid~l~~~~~~~~~~~~-~~~~~~Ll~~l~~~~--------~~~~v~vI~at----n~~~~ld~~l~r~~rf~~ 319 (757)
.|+||||||.++.+.+.+..++. .-+...|+-++.+-. ...++++|++- ..|.++-|.|.. ||.-
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--RfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--RFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--CCce
Confidence 69999999999988754433443 345567887776532 23478888643 467788888885 9999
Q ss_pred EEEeCCCCHHHHHHHHH
Q 004384 320 EIDIGVPDEVGRLEVLR 336 (757)
Q Consensus 320 ~i~i~~p~~~~r~~il~ 336 (757)
.+++...+.++-..||.
T Consensus 330 RVEL~~Lt~~Df~rILt 346 (444)
T COG1220 330 RVELDALTKEDFERILT 346 (444)
T ss_pred EEEcccCCHHHHHHHHc
Confidence 99999999998888874
No 358
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.61 E-value=6.3e-08 Score=94.60 Aligned_cols=46 Identities=28% Similarity=0.499 Sum_probs=35.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
|.||.|++..+..+.-...- +.++||+||||||||++|+.+...++
T Consensus 2 f~dI~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhhcCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 67899999988877644432 34799999999999999999998775
No 359
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.61 E-value=2.5e-07 Score=107.03 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=27.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|||||||+++|++.+
T Consensus 28 ~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 28 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788999999999999999999999876
No 360
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.60 E-value=9.6e-07 Score=98.52 Aligned_cols=205 Identities=21% Similarity=0.292 Sum_probs=130.4
Q ss_pred ceeeecCCCCChhHHHHHHHHHh----------CCceEEEeCcccccc----------ccCchh------HHHHHHHHHH
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTM----------WFGESE------ANVREIFDKA 520 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~~~----------~~g~~e------~~i~~lf~~a 520 (757)
.+.+.|-||||||.++..+..++ .+.|+.++|-.+.+. +.|+.. ..+..-|..+
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 37888999999999999888754 357888888766542 223321 2233334321
Q ss_pred -HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCcccc-C-CCccc-eE
Q 004384 521 -RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALL-R-PGRLD-QL 596 (757)
Q Consensus 521 -~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~all-r-pgRf~-~~ 596 (757)
....++|++|||.|.|..+. ..++-.|+..-. ....+++||+..|..+....-+. | .+|++ ..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 23457999999999998642 333333332211 23567888888888765443332 1 13666 67
Q ss_pred EEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Q 004384 597 IYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG--ADITEICQRACKYAIRENIEKDIERERRRRDNPEAM 674 (757)
Q Consensus 597 i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg--~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~ 674 (757)
|.|.+++.++..+|+...|+....-.+--++-+|+.-...|| +-.-.+|+.|+..|-.+....
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~--------------- 635 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG--------------- 635 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc---------------
Confidence 899999999999999999977622111113333333333444 344568999988887776411
Q ss_pred cccccccccccccHHHHHHHHhhcCCCCC
Q 004384 675 DEDAAEDEVSEIKAAHFEESMKFARRSVS 703 (757)
Q Consensus 675 ~~~~~~~~~~~i~~~~~~~a~~~~~~s~~ 703 (757)
.......|++.|+..|++.+..+.-
T Consensus 636 ----k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 636 ----KLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred ----cccccceeehHHHHHHHHHHhhhhH
Confidence 0122457899999999999855543
No 361
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.60 E-value=1.2e-06 Score=87.95 Aligned_cols=98 Identities=22% Similarity=0.233 Sum_probs=69.1
Q ss_pred EEEeeCCC------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHcCCCCH
Q 004384 572 FIIGATNR------------PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQGFSG 638 (757)
Q Consensus 572 ~vi~tTn~------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~g~sg 638 (757)
+++++||+ |.-|+-.|+. |+- +|...+++.++..+||++.+....+.-+.| ++.|......-|-
T Consensus 319 iiimaTNrgit~iRGTn~~SphGiP~D~lD--R~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsL 395 (454)
T KOG2680|consen 319 IIIMATNRGITRIRGTNYRSPHGIPIDLLD--RML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSL 395 (454)
T ss_pred EEEEEcCCceEEeecCCCCCCCCCcHHHhh--hhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhH
Confidence 56667775 5566667776 654 677788999999999999997765543333 4444555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 639 ADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 639 ~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
+---+++..|.+.|.++. ...+..+|++.+..-.
T Consensus 396 RYai~Lit~a~~~~~krk--------------------------~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 396 RYAIHLITAASLVCLKRK--------------------------GKVVEVDDIERVYRLF 429 (454)
T ss_pred HHHHHHHHHHHHHHHHhc--------------------------CceeehhHHHHHHHHH
Confidence 666788888888888775 2367788888887665
No 362
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.59 E-value=2.9e-07 Score=89.26 Aligned_cols=94 Identities=23% Similarity=0.391 Sum_probs=62.3
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-C----CceEEEeCcccc
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-Q----ANFISVKGPELL 502 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-~----~~~i~v~~~~l~ 502 (757)
..+.||+|.++....|.-.... | .-.+++|.|||||||||.+.++|+++ | -.++.+++++-.
T Consensus 24 ~~l~dIVGNe~tv~rl~via~~-----------g--nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR 90 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAKE-----------G--NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER 90 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHHc-----------C--CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc
Confidence 4578999999998888655332 1 12359999999999999999999986 3 345777777632
Q ss_pred ccccCchhHHHHHHHHHHH-hCCC---eEEEEecccchh
Q 004384 503 TMWFGESEANVREIFDKAR-QSAP---CVLFFDELDSIA 537 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~-~~~p---~il~iDEid~l~ 537 (757)
+- +.-++--..|..-+ ..+| .|+++||+|++.
T Consensus 91 GI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 91 GI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred cc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 21 11222233443322 2222 599999999974
No 363
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.58 E-value=3e-07 Score=100.84 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=75.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEech-hhhhhccchh-HHHH--HHHHHHHHhc---CCeEEEEccc
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGP-EIMSKLAGES-ESNL--RKAFEEAEKN---APSIIFIDEI 260 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~-~l~~~~~g~~-~~~l--~~vf~~a~~~---~p~il~iDEi 260 (757)
..+.+|||.||||||||++|++++...+. +|..+.+. .......|.. -... ...|...... ...++|+|||
T Consensus 37 lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI 116 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEI 116 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccc
Confidence 45778999999999999999999987653 33333221 0111112211 0000 1112211111 2348999999
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHhhccc--------CCCeEEEEEecCCCCC---CCHHhhccCCcceEEEeCCCCH-
Q 004384 261 DSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGATNRPNS---IDPALRRFGRFDREIDIGVPDE- 328 (757)
Q Consensus 261 d~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--------~~~~v~vI~atn~~~~---ld~~l~r~~rf~~~i~i~~p~~- 328 (757)
..+.+ .....|+..|..-. .-+..+++++||+... ..+++.. ||...+.+++|+.
T Consensus 117 ~rasp-----------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~ 183 (498)
T PRK13531 117 WKAGP-----------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDK 183 (498)
T ss_pred ccCCH-----------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCch
Confidence 75432 34566777774211 1122344555664332 2235555 8888899999974
Q ss_pred HHHHHHHHH
Q 004384 329 VGRLEVLRI 337 (757)
Q Consensus 329 ~~r~~il~~ 337 (757)
++-.+++..
T Consensus 184 ~~e~~lL~~ 192 (498)
T PRK13531 184 ANFRSMLTS 192 (498)
T ss_pred HHHHHHHHc
Confidence 454677764
No 364
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.58 E-value=2e-07 Score=105.33 Aligned_cols=197 Identities=21% Similarity=0.276 Sum_probs=112.4
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHH-----------hCCceEEE
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-----------CQANFISV 496 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~-----------~~~~~i~v 496 (757)
..|+++.|.....+.+.+.+.... .....+||+|++||||+++|+++... .+.+|+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 357788888877776666543211 12345999999999999999999877 35699999
Q ss_pred eCcccccc-----ccCchh--------HHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhc
Q 004384 497 KGPELLTM-----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMD 563 (757)
Q Consensus 497 ~~~~l~~~-----~~g~~e--------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld 563 (757)
+|..+... .+|..+ ..-..+|+.|.. ..||||||+.+. ..+...|+..|+
T Consensus 285 nCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~kLl~~L~ 347 (538)
T PRK15424 285 NCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMP--------------LPLQTRLLRVLE 347 (538)
T ss_pred ecccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCC--------------HHHHHHHHhhhh
Confidence 99876321 112111 011235555543 389999999974 345566666664
Q ss_pred CCC-----C----CCeEEEEeeCCCCC--CCCccccCCC---ccc-eEEEecCCCH--HHHHHHHHHhhcc----CCCCC
Q 004384 564 GMS-----A----KKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--DSRHQIFKACLRK----SPVSK 622 (757)
Q Consensus 564 ~~~-----~----~~~v~vi~tTn~~~--~ld~allrpg---Rf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~~ 622 (757)
.-. + .-++-||+|||..- .+.....|+. |+. ..|++|+.-+ ++...+++.++++ ....-
T Consensus 348 e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~ 427 (538)
T PRK15424 348 EKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPF 427 (538)
T ss_pred cCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCC
Confidence 321 1 12456888887641 2222111110 332 3455555532 4555666777654 22221
Q ss_pred ccCH--------HHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 623 DVDL--------RALAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 623 ~~d~--------~~la~~~~g~sg~di~~~~~~a~~~a 652 (757)
..+. ..|..+.-=-+-+++++++..++..+
T Consensus 428 ~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~ 465 (538)
T PRK15424 428 SAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFL 465 (538)
T ss_pred CHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 1111 12222221125689999999887753
No 365
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=1.7e-06 Score=92.61 Aligned_cols=150 Identities=19% Similarity=0.271 Sum_probs=100.2
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCC------------------------ceEEEeCccccccccCchhHHHHHHHH
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQA------------------------NFISVKGPELLTMWFGESEANVREIFD 518 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~------------------------~~i~v~~~~l~~~~~g~~e~~i~~lf~ 518 (757)
+.+..+||+||+|+||+++|.++|..+-+ .+..+.... ....+ +-..+|.+-+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKSSL--GVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccccC--CHHHHHHHHH
Confidence 34557999999999999999999987522 122222110 00000 1234444444
Q ss_pred ----HHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccc
Q 004384 519 ----KARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLD 594 (757)
Q Consensus 519 ----~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~ 594 (757)
.+......|++||++|.+- ...-|.||+.|+. +..+.++|.+|+.|+.|-|.+.+ |..
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq 160 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR 160 (334)
T ss_pred HHhhccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc
Confidence 4444556799999999973 4567999999997 45578888888999999999887 887
Q ss_pred eEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCH
Q 004384 595 QLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG 638 (757)
Q Consensus 595 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg 638 (757)
.+.|++|+.++..+.+... .+++. .+...++..+.|--+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~---~~~~~-~~a~~~~~la~G~~~ 199 (334)
T PRK07993 161 -LHYLAPPPEQYALTWLSRE---VTMSQ-DALLAALRLSAGAPG 199 (334)
T ss_pred -cccCCCCCHHHHHHHHHHc---cCCCH-HHHHHHHHHcCCCHH
Confidence 6899999988877776532 22222 224455666666433
No 366
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.56 E-value=6.7e-07 Score=102.97 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=116.7
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 503 (757)
...+++++|.....+.+.+.+.... .....|+|+|++|||||++|+++...+ +.+|+.++|..+..
T Consensus 192 ~~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred cCccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 4567788888877766665544221 123459999999999999999999875 46999999987632
Q ss_pred cc-----cCchhH-------HHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004384 504 MW-----FGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 566 (757)
Q Consensus 504 ~~-----~g~~e~-------~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 566 (757)
.+ +|.... .-...|..+ ....||||||+.+. ..+...|+..|+.-.
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~--------------~~~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS--------------PAFQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC--------------HHHHHHHHHHHhcCcEEECC
Confidence 11 111100 000112223 23589999999974 345566666665421
Q ss_pred C----CCeEEEEeeCCCCC-------CCCccccCCCccc-eEEEecCCC--HHHHHHHHHHhhccC----CCCCccC---
Q 004384 567 A----KKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPD--EDSRHQIFKACLRKS----PVSKDVD--- 625 (757)
Q Consensus 567 ~----~~~v~vi~tTn~~~-------~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~l~~~----~~~~~~d--- 625 (757)
. ..++-+|+|||..- .+.+.|.. |+. ..|.+|+.. .++...+++.++.+. +....++
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSA 401 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 1 12467888887641 22333333 443 467777664 355666777766432 2222233
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 626 LRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 626 ~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
+..|..+.---+-+++++++..|+..+-
T Consensus 402 ~~~L~~~~WPGNvrEL~~v~~~a~~~~~ 429 (534)
T TIGR01817 402 IRVLMSCKWPGNVRELENCLERTATLSR 429 (534)
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 3334433322367899999998887653
No 367
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.55 E-value=6e-07 Score=87.12 Aligned_cols=135 Identities=18% Similarity=0.261 Sum_probs=81.9
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----eEEEEe
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCIN 224 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-----~~~~v~ 224 (757)
++.++..+.||+|.++.++.+.-+..- ..-.+++|.|||||||||-+.++|.++-. -+..+|
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~-------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN 85 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKE-------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN 85 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHc-------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc
Confidence 356677789999999999988766543 22457999999999999999999988632 235566
Q ss_pred chhhhhhccchhHHHHHHHHHHHHh-c---CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004384 225 GPEIMSKLAGESESNLRKAFEEAEK-N---APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 300 (757)
Q Consensus 225 ~~~l~~~~~g~~~~~l~~vf~~a~~-~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~a 300 (757)
.++-.+ ..-...+++. |.+-+- . .-.|+++||+|.+... ....|...|+-+....++ ..+
T Consensus 86 ASdeRG--IDvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~g-----------AQQAlRRtMEiyS~ttRF--ala 149 (333)
T KOG0991|consen 86 ASDERG--IDVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAG-----------AQQALRRTMEIYSNTTRF--ALA 149 (333)
T ss_pred Cccccc--cHHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhH-----------HHHHHHHHHHHHcccchh--hhh
Confidence 544211 1111222322 332222 1 2259999999987422 123444555554443333 447
Q ss_pred cCCCCCCCHHhhc
Q 004384 301 TNRPNSIDPALRR 313 (757)
Q Consensus 301 tn~~~~ld~~l~r 313 (757)
||..+.+-..+.+
T Consensus 150 CN~s~KIiEPIQS 162 (333)
T KOG0991|consen 150 CNQSEKIIEPIQS 162 (333)
T ss_pred hcchhhhhhhHHh
Confidence 7776666444443
No 368
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.55 E-value=2e-08 Score=89.84 Aligned_cols=104 Identities=30% Similarity=0.410 Sum_probs=55.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech-hh-----hhhccchhHH-----HHHHHHHHHHhcCCeEEEEccccc
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCINGP-EI-----MSKLAGESES-----NLRKAFEEAEKNAPSIIFIDEIDS 262 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~-~l-----~~~~~g~~~~-----~l~~vf~~a~~~~p~il~iDEid~ 262 (757)
+|||.|+||+|||++++++|..++..|..|.+. ++ .+...-.... .-.-+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999888763 32 2211100000 001122 24999999987
Q ss_pred ccCCCCCCchHHHHHHHHHHHHHhhccc---------CCCeEEEEEecCCCC-----CCCHHhhccCCc
Q 004384 263 IAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVIVIGATNRPN-----SIDPALRRFGRF 317 (757)
Q Consensus 263 l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---------~~~~v~vI~atn~~~-----~ld~~l~r~~rf 317 (757)
..+ +..+.|++.|.+.. -...++||+|.|+.+ .++.++.. ||
T Consensus 74 app-----------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 74 APP-----------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp S-H-----------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CCH-----------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 653 34567777775321 123588899988765 45566655 55
No 369
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.54 E-value=3.1e-07 Score=104.01 Aligned_cols=197 Identities=19% Similarity=0.261 Sum_probs=114.1
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 504 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~ 504 (757)
..|+++.|.....+.+.+.+.... .....+||.|++||||+++|+++...+ +.+|+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 567788888877776666553211 123459999999999999999998765 469999999766321
Q ss_pred -----ccCchh--------HHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004384 505 -----WFGESE--------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 566 (757)
Q Consensus 505 -----~~g~~e--------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 566 (757)
.+|..+ ..-..+|+.|.. ..||||||+.|. ..+...|+..|+.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp--------------~~~Q~~Ll~~L~~~~~~r~g 340 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMP--------------LPLQTRLLRVLEEREVVRVG 340 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCC--------------HHHHHHHHHHHhcCcEEecC
Confidence 112110 011234555543 489999999974 344556666554321
Q ss_pred C----CCeEEEEeeCCCC--CCCCccccCC---Cccc-eEEEecCCCH--HHHHHHHHHhhccCCCC--CccCHHH----
Q 004384 567 A----KKTVFIIGATNRP--DIIDPALLRP---GRLD-QLIYIPLPDE--DSRHQIFKACLRKSPVS--KDVDLRA---- 628 (757)
Q Consensus 567 ~----~~~v~vi~tTn~~--~~ld~allrp---gRf~-~~i~~~~p~~--~~r~~Il~~~l~~~~~~--~~~d~~~---- 628 (757)
. .-++-+|+|||.. +.+....+|+ -|+. ..|++||.-+ ++...+++.++++.... ..++-+.
T Consensus 341 ~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 341 GTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 1 1134688888764 2233322221 1443 4666766643 45566667776543111 1122222
Q ss_pred ------HHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 629 ------LAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 629 ------la~~~~g~sg~di~~~~~~a~~~a 652 (757)
|..+.-=-+-+++++++..++..+
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALEL 450 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhc
Confidence 222221125689999998887654
No 370
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1e-06 Score=93.23 Aligned_cols=154 Identities=23% Similarity=0.283 Sum_probs=100.2
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCCce-------------EEEeCcccccc-----ccCc------hhHHHHHHHHH
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQANF-------------ISVKGPELLTM-----WFGE------SEANVREIFDK 519 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~~~-------------i~v~~~~l~~~-----~~g~------~e~~i~~lf~~ 519 (757)
.+..+||+||+|+||+++|.++|..+-+.- ..-+-+|+.-- ..|. .-..||.+-+.
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 345699999999999999999998652210 00011122100 0010 13356666655
Q ss_pred HHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccce
Q 004384 520 ARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 520 a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~ 595 (757)
+... ...|++||++|.+- ....|.||+.|+.- ..++++|.+|+.++.|-|.+.+ |+.
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEEP--p~~~~fiL~~~~~~~lLpTIrS--RCq- 165 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEEP--SPGRYLWLISAQPARLPATIRS--RCQ- 165 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhCC--CCCCeEEEEECChhhCchHHHh--hhe-
Confidence 4433 34799999999973 45678999999874 3467777888889999999887 887
Q ss_pred EEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHH
Q 004384 596 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADI 641 (757)
Q Consensus 596 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di 641 (757)
.+.|++|+.++..+.+... +++. .+...++..+.|--+..+
T Consensus 166 ~i~~~~~~~~~~~~~L~~~----~~~~-~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLAQ----GVSE-RAAQEALDAARGHPGLAA 206 (319)
T ss_pred EeeCCCcCHHHHHHHHHHc----CCCh-HHHHHHHHHcCCCHHHHH
Confidence 8899999998877777542 2221 224456666666544443
No 371
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.53 E-value=1.8e-07 Score=93.17 Aligned_cols=109 Identities=19% Similarity=0.283 Sum_probs=67.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh-----------------------------------
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI----------------------------------- 228 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l----------------------------------- 228 (757)
++.+.+++.|.|+||+|||||||++.+|+..... -+.+++..+
T Consensus 23 ~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~ 102 (248)
T COG1116 23 NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGK 102 (248)
T ss_pred eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhcccc
Confidence 3456789999999999999999999999865311 011211110
Q ss_pred ---------------------hhhccchhHH--HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHH
Q 004384 229 ---------------------MSKLAGESES--NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTL 285 (757)
Q Consensus 229 ---------------------~~~~~g~~~~--~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~ 285 (757)
.+.|..+... +-+..+..|....|.+|++|| +.+.++......+.+.
T Consensus 103 ~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE----------PFgALDalTR~~lq~~ 172 (248)
T COG1116 103 SKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE----------PFGALDALTREELQDE 172 (248)
T ss_pred chHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC----------CcchhhHHHHHHHHHH
Confidence 1112222111 224467777788999999999 4444444444445555
Q ss_pred hhcccCCCeEEEEEecCCC
Q 004384 286 MDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 286 l~~~~~~~~v~vI~atn~~ 304 (757)
+-.+..+.+..++..||+.
T Consensus 173 l~~lw~~~~~TvllVTHdi 191 (248)
T COG1116 173 LLRLWEETRKTVLLVTHDV 191 (248)
T ss_pred HHHHHHhhCCEEEEEeCCH
Confidence 5444455556777788864
No 372
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.52 E-value=2.1e-07 Score=107.65 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..+.|+||+|+|||||+++|++..
T Consensus 26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356788889999999999999999999875
No 373
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.52 E-value=2.4e-07 Score=93.97 Aligned_cols=108 Identities=19% Similarity=0.293 Sum_probs=68.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh--------------------------------hhh-
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--------------------------------MSK- 231 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l--------------------------------~~~- 231 (757)
+.+++++.+.|.||+|||||||++++++.+... -+.+++.++ .+.
T Consensus 23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 456778889999999999999999999876411 122222111 000
Q ss_pred ----ccc----h--------------------------hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHH
Q 004384 232 ----LAG----E--------------------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERR 277 (757)
Q Consensus 232 ----~~g----~--------------------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~ 277 (757)
+.+ + ..++-+..+..|..+.|.++++||- .+.++-.
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEP----------Ts~LDi~ 172 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEP----------TSHLDIA 172 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCC----------ccccCHH
Confidence 000 0 0122244567788899999999994 3333333
Q ss_pred HHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 278 IVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 278 ~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
-.-.+++++..+....+..+|.+.|++
T Consensus 173 ~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 173 HQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 345566777776656567778888764
No 374
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.51 E-value=8.2e-07 Score=95.74 Aligned_cols=124 Identities=27% Similarity=0.393 Sum_probs=83.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC------------------------CeEEEEechhhhhhccchhHHHHHHHHHHHHh
Q 004384 194 GILLYGPPGSGKTLIARAVANETG------------------------AFFFCINGPEIMSKLAGESESNLRKAFEEAEK 249 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~------------------------~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~ 249 (757)
.+||+||||+|||++|.++|+.+. ..++.++.++..... .....++.+.+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 499999999999999999999886 356667665543221 123345554443322
Q ss_pred ----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCC
Q 004384 250 ----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 325 (757)
Q Consensus 250 ----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~ 325 (757)
....+++|||+|.+..+ ..+.++..+..... +..+|.+||.++.+-+.+++ |. ..+.+.+
T Consensus 104 ~~~~~~~kviiidead~mt~~-----------A~nallk~lEep~~--~~~~il~~n~~~~il~tI~S--Rc-~~i~f~~ 167 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTED-----------AANALLKTLEEPPK--NTRFILITNDPSKILPTIRS--RC-QRIRFKP 167 (325)
T ss_pred CCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHhccCCC--CeEEEEEcCChhhccchhhh--cc-eeeecCC
Confidence 33579999999988542 33567777765443 56777788999988888887 55 5567766
Q ss_pred CCHHHHHHHH
Q 004384 326 PDEVGRLEVL 335 (757)
Q Consensus 326 p~~~~r~~il 335 (757)
|........+
T Consensus 168 ~~~~~~i~~~ 177 (325)
T COG0470 168 PSRLEAIAWL 177 (325)
T ss_pred chHHHHHHHh
Confidence 5555444333
No 375
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.51 E-value=4e-06 Score=88.08 Aligned_cols=63 Identities=38% Similarity=0.614 Sum_probs=41.8
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhh
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI 228 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~--~~~~~v~~~~l 228 (757)
+.++|..++.+..-=++++- +. +--.++++||.||||||||.||-++|.++| .||..++++++
T Consensus 24 ~GlVGQ~~AReAagiiv~mI-k~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEi 88 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI-KE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEI 88 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH-HT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG
T ss_pred ccccChHHHHHHHHHHHHHH-hc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccccee
Confidence 46889988887765555441 11 123578999999999999999999999997 44555555444
No 376
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.50 E-value=3.7e-07 Score=106.89 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=33.4
Q ss_pred hhhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhC--CceEEEeCccc
Q 004384 456 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPEL 501 (757)
Q Consensus 456 ~~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~--~~~i~v~~~~l 501 (757)
.++++++....| +.|.||+|||||||++++++... ..-+.+++.++
T Consensus 339 ~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i 388 (623)
T PRK10261 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRI 388 (623)
T ss_pred EEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEEC
Confidence 445555555555 89999999999999999998763 33455666544
No 377
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=2.2e-06 Score=91.61 Aligned_cols=128 Identities=18% Similarity=0.313 Sum_probs=88.2
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 247 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 247 (757)
+..+||+||+|+|||++|+.+|..+... ++.+...+- ++ .-.-..++.+.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHHHH
Confidence 4469999999999999999999887431 222211000 00 01234556655444
Q ss_pred H----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 004384 248 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 323 (757)
Q Consensus 248 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i 323 (757)
. .....|++||++|.+-. ...+.|++.+++-. .++++|.+|+.++.+.|.+++ |. ..+.+
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp--~~~~fiL~t~~~~~ll~TI~S--Rc-~~~~~ 162 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPS--GDTVLLLISHQPSRLLPTIKS--RC-QQQAC 162 (328)
T ss_pred hhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCC--CCeEEEEEECChhhCcHHHHh--hc-eeeeC
Confidence 3 23456899999998753 23467888888743 467777899999999999998 77 45899
Q ss_pred CCCCHHHHHHHHHHH
Q 004384 324 GVPDEVGRLEVLRIH 338 (757)
Q Consensus 324 ~~p~~~~r~~il~~~ 338 (757)
++|+.++-.+.|...
T Consensus 163 ~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 163 PLPSNEESLQWLQQA 177 (328)
T ss_pred CCcCHHHHHHHHHHh
Confidence 999998887777654
No 378
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.49 E-value=5.5e-07 Score=102.74 Aligned_cols=196 Identities=22% Similarity=0.269 Sum_probs=113.4
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc--
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-- 504 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-- 504 (757)
..+++|.....+.+.+.+.... .....|||+|++||||+++|+++...+ +.+|+.++|..+...
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a-----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA-----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 4556677666666655544211 123459999999999999999999875 468999999876421
Q ss_pred ---ccCchh-------HHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------
Q 004384 505 ---WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-------- 566 (757)
Q Consensus 505 ---~~g~~e-------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-------- 566 (757)
.+|... ......|..|. ...||||||+.+. ..+...|+..|+.-.
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~ 317 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELP--------------LALQAKLLRVLQYGEIQRVGSDR 317 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCC--------------HHHHHHHHHHHhcCCEeeCCCCc
Confidence 112110 00111344443 3489999999974 344556666554321
Q ss_pred -CCCeEEEEeeCCCCC-------CCCccccCCCccc-eEEEecCCCH--HHHHHHHHHhhccC----CC-CCccCH---H
Q 004384 567 -AKKTVFIIGATNRPD-------IIDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRKS----PV-SKDVDL---R 627 (757)
Q Consensus 567 -~~~~v~vi~tTn~~~-------~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~-~~~~d~---~ 627 (757)
...++-||++||+.- .+.+.|.. |+. ..|++|+... ++.-.++++++++. +. ...++- .
T Consensus 318 ~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~ 395 (509)
T PRK05022 318 SLRVDVRVIAATNRDLREEVRAGRFRADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQA 395 (509)
T ss_pred ceecceEEEEecCCCHHHHHHcCCccHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 112567888888742 23334433 444 3466665532 34455555555432 11 122333 3
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHH
Q 004384 628 ALAKYTQGFSGADITEICQRACKYAIRE 655 (757)
Q Consensus 628 ~la~~~~g~sg~di~~~~~~a~~~a~~~ 655 (757)
.|..+.-=-+-+++++++..|+..+-..
T Consensus 396 ~L~~y~WPGNvrEL~~~i~ra~~~~~~~ 423 (509)
T PRK05022 396 ALLAYDWPGNVRELEHVISRAALLARAR 423 (509)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhcCCC
Confidence 3333332236789999999998877543
No 379
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.48 E-value=7.4e-07 Score=104.01 Aligned_cols=154 Identities=22% Similarity=0.347 Sum_probs=94.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC------------------
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------------------ 217 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~------------------ 217 (757)
.|.+|.|.+..+..+.-....| ...+|||.|++|||||+++++|+..++
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 5778999998876654333221 124699999999999999999999873
Q ss_pred -----------------CeEEEEechhhhhhccchhHHHHHHHHHH---------HHhcCCeEEEEcccccccCCCCCCc
Q 004384 218 -----------------AFFFCINGPEIMSKLAGESESNLRKAFEE---------AEKNAPSIIFIDEIDSIAPKREKTH 271 (757)
Q Consensus 218 -----------------~~~~~v~~~~l~~~~~g~~~~~l~~vf~~---------a~~~~p~il~iDEid~l~~~~~~~~ 271 (757)
.+|+.+.+........|... +...++. .......+|||||++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD------ 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH------
Confidence 23444433222222222110 1111110 0011235999999998753
Q ss_pred hHHHHHHHHHHHHHhhcc-----------cCCCeEEEEEecCCC-CCCCHHhhccCCcceEEEeCCCC-HHHHHHHHHH
Q 004384 272 GEVERRIVSQLLTLMDGL-----------KSRAHVIVIGATNRP-NSIDPALRRFGRFDREIDIGVPD-EVGRLEVLRI 337 (757)
Q Consensus 272 ~~~~~~~~~~Ll~~l~~~-----------~~~~~v~vI~atn~~-~~ld~~l~r~~rf~~~i~i~~p~-~~~r~~il~~ 337 (757)
.+...|+..|+.- .....+.+|+++|.. ..+.++|.. ||...+.++.+. .+++.+++..
T Consensus 141 -----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 141 -----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred -----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHH
Confidence 2446677766531 112358888888854 357788877 898888887775 4666677653
No 380
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1.6e-06 Score=91.74 Aligned_cols=129 Identities=13% Similarity=0.190 Sum_probs=91.1
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCC-----------------------ceEEEeCccccccccCchhHHHHHHHHH
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQA-----------------------NFISVKGPELLTMWFGESEANVREIFDK 519 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~-----------------------~~i~v~~~~l~~~~~g~~e~~i~~lf~~ 519 (757)
+.+..+||+||.|+||+++|+++|..+-+ .|+.+.... .++.+ +-..+|.+-+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 34567999999999999999999986521 222222210 00111 12345655444
Q ss_pred HH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccce
Q 004384 520 AR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 520 a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~ 595 (757)
+. .....|++||++|.+- ...-|.||+.|+. +..++++|..|+.++.|-|.+.+ |..
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 43 3345799999999973 4567999999997 44568888888889999888887 887
Q ss_pred EEEecCCCHHHHHHHHHH
Q 004384 596 LIYIPLPDEDSRHQIFKA 613 (757)
Q Consensus 596 ~i~~~~p~~~~r~~Il~~ 613 (757)
.+.|++|+.++..+.+..
T Consensus 161 ~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred eEeCCCCCHHHHHHHHHH
Confidence 889999999888877754
No 381
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.47 E-value=8e-07 Score=104.69 Aligned_cols=195 Identities=21% Similarity=0.240 Sum_probs=108.8
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc-
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT- 503 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~- 503 (757)
..|+++.|.....+.+.+.+.... .....++|+|++||||+++|+++...+ +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 356777777665555544433211 123449999999999999999998875 36999999876531
Q ss_pred ----cccCch----hHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----CC--
Q 004384 504 ----MWFGES----EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----AK-- 568 (757)
Q Consensus 504 ----~~~g~~----e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~~-- 568 (757)
..+|.. .......|+.| ....||||||+.+. ..+...|+..|+.-. ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~--------------~~~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLS--------------PELQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCce
Confidence 122211 00011123333 23589999999974 344556666554321 10
Q ss_pred --CeEEEEeeCCCCC-------CCCccccCCCcc-ceEEEecCCCH--HHHHHHHHHhhccC----CCCCccC---HHHH
Q 004384 569 --KTVFIIGATNRPD-------IIDPALLRPGRL-DQLIYIPLPDE--DSRHQIFKACLRKS----PVSKDVD---LRAL 629 (757)
Q Consensus 569 --~~v~vi~tTn~~~-------~ld~allrpgRf-~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~~~d---~~~l 629 (757)
-++-||+|||..- .+.+.+.- |+ ...|.+|+.-. ++...+++.++++. +....++ +..|
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L 531 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYY--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhh--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 1567888888642 11222221 33 24455555432 34555666666432 1111233 3333
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Q 004384 630 AKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 630 a~~~~g~sg~di~~~~~~a~~~a 652 (757)
..+.---+-++++++++.|...+
T Consensus 532 ~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 532 VSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HcCCCCChHHHHHHHHHHHHHhC
Confidence 33332236689999999887654
No 382
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.8e-07 Score=95.26 Aligned_cols=96 Identities=35% Similarity=0.556 Sum_probs=70.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch-hHHHHHHHHHHHH----hcCCeEEEEcccccccCC
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE-SESNLRKAFEEAE----KNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~g~-~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~ 266 (757)
.+|||.||+|+|||.|++.||..++.+|...+|..+.. .|+|+ .+..+..+++.|. ..+-.|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 56999999999999999999999999999999987754 57775 4556677777653 334579999999999843
Q ss_pred CCC-Cc--hHHHHHHHHHHHHHhhc
Q 004384 267 REK-TH--GEVERRIVSQLLTLMDG 288 (757)
Q Consensus 267 ~~~-~~--~~~~~~~~~~Ll~~l~~ 288 (757)
... .. +--..-+...|+.++++
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred CccccccccccchhHHHHHHHHhcc
Confidence 221 11 11123456678888875
No 383
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.46 E-value=3.6e-07 Score=87.99 Aligned_cols=98 Identities=31% Similarity=0.495 Sum_probs=64.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc-----ccCch-------hHHHHHHHHHHHhCCCeEEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-----WFGES-------EANVREIFDKARQSAPCVLFF 530 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-----~~g~~-------e~~i~~lf~~a~~~~p~il~i 530 (757)
..|||+|++||||+++|+++...+ +.||+.++++.+... .+|.. ...-..+|+.|... .|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~G---tL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGG---TLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTS---EEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccce---EEee
Confidence 459999999999999999999865 469999999876322 12221 11123577777666 9999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-----CC----CCeEEEEeeCCCC
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNRP 580 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~tTn~~ 580 (757)
|||+.|. ..+...|+..|+.- .. .-++-||+|||.+
T Consensus 100 d~I~~L~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 100 DEIEDLP--------------PELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp ETGGGS---------------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cchhhhH--------------HHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 9999974 44566666666531 11 1268889999853
No 384
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=6.7e-07 Score=95.41 Aligned_cols=132 Identities=20% Similarity=0.263 Sum_probs=89.6
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCC-------------------------ceEEEeCcc---ccccc-cCchhHHH
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQA-------------------------NFISVKGPE---LLTMW-FGESEANV 513 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~-------------------------~~i~v~~~~---l~~~~-~g~~e~~i 513 (757)
+.+..+||+||+|+|||++|+.+|..+.+ .|+.+.... -.++. -.-+-..|
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44567999999999999999999987531 233333210 00000 00123456
Q ss_pred HHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccC
Q 004384 514 REIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR 589 (757)
Q Consensus 514 ~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allr 589 (757)
|.+.+.+.. ....|+++|+++.+- ....+.+++.|+... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 776666643 335699999998863 455677888888764 245566688888888888876
Q ss_pred CCccceEEEecCCCHHHHHHHHHH
Q 004384 590 PGRLDQLIYIPLPDEDSRHQIFKA 613 (757)
Q Consensus 590 pgRf~~~i~~~~p~~~~r~~Il~~ 613 (757)
|+. .+.|++|+.++..+.+..
T Consensus 163 --Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hhh-hhcCCCCCHHHHHHHHHh
Confidence 775 888999999887777754
No 385
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=5.9e-07 Score=94.30 Aligned_cols=31 Identities=29% Similarity=0.424 Sum_probs=26.5
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.|-.++...|+||+|-|||||++.||...
T Consensus 284 ~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra 314 (807)
T KOG0066|consen 284 SLTIVYGRRYGLVGPNGMGKTTLLKHIAARA 314 (807)
T ss_pred ceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence 4456678889999999999999999998763
No 386
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.45 E-value=1.5e-06 Score=92.55 Aligned_cols=161 Identities=24% Similarity=0.368 Sum_probs=105.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeC--------
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKG-------- 498 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~-------- 498 (757)
.+.|..+.|++..|..|.-.... +.-.|+|+.|+.|+||||++++||..+..--+...+
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~-------------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVD-------------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhcc-------------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 45677788999888876433221 123579999999999999999999986321111110
Q ss_pred c------------------------cccccccCchhHH----------HH---HHHH---HHHhCCCeEEEEecccchhc
Q 004384 499 P------------------------ELLTMWFGESEAN----------VR---EIFD---KARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 499 ~------------------------~l~~~~~g~~e~~----------i~---~lf~---~a~~~~p~il~iDEid~l~~ 538 (757)
+ .+...-.|.++.. ++ ..|+ .|+.+ ..|+++||+..|
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL-- 156 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLL-- 156 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEeccccc--
Confidence 0 0111112333331 11 1111 12222 259999999886
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCC-----------CCCCeEEEEeeCCCCC-CCCccccCCCccceEEEecCC-CHH
Q 004384 539 QRGSSVGDAGGAADRVLNQLLTEMDGM-----------SAKKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DED 605 (757)
Q Consensus 539 ~r~~~~~~~~~~~~~~~~~ll~~ld~~-----------~~~~~v~vi~tTn~~~-~ld~allrpgRf~~~i~~~~p-~~~ 605 (757)
.+.+++.||+.+... ...-++++|||+|.-+ .|-|-|+. ||...|.+..| +.+
T Consensus 157 ------------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~ 222 (423)
T COG1239 157 ------------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLE 222 (423)
T ss_pred ------------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHH
Confidence 367888888876542 1234799999999753 67788887 99999999766 679
Q ss_pred HHHHHHHHhhcc
Q 004384 606 SRHQIFKACLRK 617 (757)
Q Consensus 606 ~r~~Il~~~l~~ 617 (757)
+|.+|.+..+..
T Consensus 223 ~rv~Ii~r~~~f 234 (423)
T COG1239 223 ERVEIIRRRLAF 234 (423)
T ss_pred HHHHHHHHHHHh
Confidence 999999988755
No 387
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.45 E-value=8e-06 Score=85.52 Aligned_cols=173 Identities=17% Similarity=0.301 Sum_probs=96.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC-eEE--E-Eec----hhhh----hhc----cchh-H---HHHHHHH-HHHHhcC
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGA-FFF--C-ING----PEIM----SKL----AGES-E---SNLRKAF-EEAEKNA 251 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~-~~~--~-v~~----~~l~----~~~----~g~~-~---~~l~~vf-~~a~~~~ 251 (757)
..++|+||+|+||||+++.+++.+.. .+. . +++ .++. ..+ .+.. . ..+...+ .......
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 35899999999999999999998762 221 1 111 1111 110 0111 1 1122222 2233456
Q ss_pred CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-CCCeEEEEEecCCCC---CC-C---HHhhccCCcceEEEe
Q 004384 252 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPN---SI-D---PALRRFGRFDREIDI 323 (757)
Q Consensus 252 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~v~vI~atn~~~---~l-d---~~l~r~~rf~~~i~i 323 (757)
+.++++||++.+.+. ....+..+.+... ....+.|+.+ ..++ .+ + ..+.+ |+...+++
T Consensus 124 ~~vliiDe~~~l~~~-----------~~~~l~~l~~~~~~~~~~~~vvl~-g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-----------LLEELRMLSNFQTDNAKLLQIFLV-GQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred CeEEEEECcccCCHH-----------HHHHHHHHhCcccCCCCeEEEEEc-CCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 789999999876321 1122222222111 1222222222 2222 11 1 12333 66778899
Q ss_pred CCCCHHHHHHHHHHHhcCCC-----CCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhh
Q 004384 324 GVPDEVGRLEVLRIHTKNMK-----LSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 380 (757)
Q Consensus 324 ~~p~~~~r~~il~~~~~~~~-----l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 380 (757)
+..+.++..+++...++... ...+..++.+.+.+.|+.. .+..+|..+...+....
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~-~i~~l~~~~~~~a~~~~ 250 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPR-LINILCDRLLLSAFLEE 250 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCccc-HHHHHHHHHHHHHHHcC
Confidence 99999998888876654322 1233468889999999854 48888888877665543
No 388
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=98.44 E-value=4.7e-06 Score=95.41 Aligned_cols=78 Identities=23% Similarity=0.227 Sum_probs=49.1
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc--------------cc--------c------Cch
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------------MW--------F------GES 509 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~--------------~~--------~------g~~ 509 (757)
|+.....++++||||+|||+++..++... +.+.+.++..+-.. .+ . ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 56666669999999999999999887643 45555554322110 00 0 001
Q ss_pred hHHHHHHHHHHHhCCCeEEEEecccchhc
Q 004384 510 EANVREIFDKARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 510 e~~i~~lf~~a~~~~p~il~iDEid~l~~ 538 (757)
+..+..+-+......+.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22334444555566788999999988764
No 389
>PRK04132 replication factor C small subunit; Provisional
Probab=98.44 E-value=4e-06 Score=98.74 Aligned_cols=149 Identities=21% Similarity=0.205 Sum_probs=106.2
Q ss_pred CceEEEEc--CCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhc------CCeEEEEc
Q 004384 192 PKGILLYG--PPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN------APSIIFID 258 (757)
Q Consensus 192 ~~~vLL~G--p~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~------~p~il~iD 258 (757)
+-+-+..| |++.||||+|+++|+++ +..++.+|+++..+ -..++.++..+... ...|++||
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIID 637 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLD 637 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEE
Confidence 34456678 99999999999999997 45789999876422 23456555544322 23699999
Q ss_pred ccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHH
Q 004384 259 EIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 338 (757)
Q Consensus 259 Eid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 338 (757)
|+|.+... ..+.|+..|+.... .+.+|.+||++..+.+.+++ |+ ..+.++.|+..+-...|+..
T Consensus 638 EaD~Lt~~-----------AQnALLk~lEep~~--~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 638 EADALTQD-----------AQQALRRTMEMFSS--NVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred CcccCCHH-----------HHHHHHHHhhCCCC--CeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 99988531 34668888876543 67788889999999999987 66 67899999988877777765
Q ss_pred hcCCCCC-CchhhhHHhHhcCCCch
Q 004384 339 TKNMKLS-DDVDLERIAKDTHGYVG 362 (757)
Q Consensus 339 ~~~~~l~-~~~~l~~la~~t~g~~~ 362 (757)
+....+. ++..+..++..++|-..
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~GDlR 726 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEGDMR 726 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCCCHH
Confidence 5432222 34457888888877443
No 390
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=5e-06 Score=88.42 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=112.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------------
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 219 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------------- 219 (757)
.|++|.|++..++.++..+... .-+..+||+||+|+||+++|.++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4789999999999999888652 123479999999999999999999876321
Q ss_pred --EEEEechhhh-hh--------ccc--------hhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHH
Q 004384 220 --FFCINGPEIM-SK--------LAG--------ESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVER 276 (757)
Q Consensus 220 --~~~v~~~~l~-~~--------~~g--------~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~ 276 (757)
++.+...... ++ ..| -.-..++.+.+.+. .....|++||++|.+..
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 1222211000 00 000 01123455544433 23457999999987743
Q ss_pred HHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHh
Q 004384 277 RIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKD 356 (757)
Q Consensus 277 ~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~ 356 (757)
...+.|+..++... . .++|..|+.++.+-|.+++ |. ..+.++.++.++-.++|......- ..+.+...++..
T Consensus 139 ~aaNaLLK~LEEPp-~--~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~~~--~~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEPG-N--GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGDEE--ILNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCCC-C--CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhccc--cchhHHHHHHHH
Confidence 23467888888754 3 3455677788999999988 66 678999999998888887543211 111123556666
Q ss_pred cCCCch
Q 004384 357 THGYVG 362 (757)
Q Consensus 357 t~g~~~ 362 (757)
..|-.+
T Consensus 211 a~Gs~~ 216 (314)
T PRK07399 211 AQGSPG 216 (314)
T ss_pred cCCCHH
Confidence 655443
No 391
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.43 E-value=5.5e-07 Score=90.84 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCH
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~ 309 (757)
+..+..|..+.|.++++|| +...++......+.+++..++.. +..|+..+++...+..
T Consensus 147 RV~lARAL~~~p~lllLDE----------P~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDE----------PFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecC----------CcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCcHHhHh
Confidence 5567788889999999999 44445555567788888888877 7788889998765544
No 392
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.43 E-value=2.7e-06 Score=100.86 Aligned_cols=197 Identities=23% Similarity=0.303 Sum_probs=112.7
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM 504 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~ 504 (757)
..++++.|.....+.+.+.+.... .....++|.|++|||||++|+++...+ +.+|+.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 456778888877776665544211 122459999999999999999998865 468999998765321
Q ss_pred -----ccCc--------hhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004384 505 -----WFGE--------SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 566 (757)
Q Consensus 505 -----~~g~--------~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 566 (757)
.+|. ..... ..|..|. ...+|||||+.+. ..+...|+..|+...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~a~---~GtL~Ldei~~L~--------------~~~Q~~L~~~l~~~~~~~~g 503 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFELAD---KSSLFLDEVGDMP--------------LELQPKLLRVLQEQEFERLG 503 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHhcC---CCeEEEechhhCC--------------HHHHHHHHHHHHhCCEEeCC
Confidence 1221 11112 2344443 3599999999973 344556666554321
Q ss_pred ----CCCeEEEEeeCCCCC--CCCccccCCC---ccc-eEEEecCCCH--HHHHHHHHHhhccC----CCCC-ccC---H
Q 004384 567 ----AKKTVFIIGATNRPD--IIDPALLRPG---RLD-QLIYIPLPDE--DSRHQIFKACLRKS----PVSK-DVD---L 626 (757)
Q Consensus 567 ----~~~~v~vi~tTn~~~--~ld~allrpg---Rf~-~~i~~~~p~~--~~r~~Il~~~l~~~----~~~~-~~d---~ 626 (757)
...++-+|++||..- .+....+|+. |+. ..|.+|+... ++.-.+++.++.+. +... .+. +
T Consensus 504 ~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al 583 (686)
T PRK15429 504 SNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETL 583 (686)
T ss_pred CCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 123577888887642 2222222210 333 2455554432 34444566655432 2111 122 3
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 627 RALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 627 ~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
..|..+.-=-+-++++++++.|+..+-
T Consensus 584 ~~L~~y~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 584 RTLSNMEWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhCC
Confidence 334333222367899999999987653
No 393
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=2.6e-06 Score=91.58 Aligned_cols=148 Identities=14% Similarity=0.196 Sum_probs=97.7
Q ss_pred cccccC-hHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe----------------
Q 004384 157 YDDVGG-VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF---------------- 219 (757)
Q Consensus 157 ~~~i~G-~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---------------- 219 (757)
|+.|.| ++..++.++..+... .-+..+||+||+|+||+++|+.+|..+...
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~------------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKN------------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcC------------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 566666 888888888777531 123457999999999999999999886321
Q ss_pred --------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhh
Q 004384 220 --------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 287 (757)
Q Consensus 220 --------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~ 287 (757)
+..+... +. .-.-..++.+.+... .....|++|||+|.+-. ...+.|+..++
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 1111110 00 011234555544432 23346999999987742 23467888887
Q ss_pred cccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHH
Q 004384 288 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRI 337 (757)
Q Consensus 288 ~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 337 (757)
... ..+++|.+|+.+..+.+.+++ |. ..+++..|+.++-.+.++.
T Consensus 136 EPp--~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EPS--GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCC--CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 643 355666678888899999988 66 6688999998887766653
No 394
>PRK08116 hypothetical protein; Validated
Probab=98.42 E-value=1.4e-06 Score=90.63 Aligned_cols=123 Identities=17% Similarity=0.308 Sum_probs=70.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch----hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
+.+++|+|++|||||+|+.+++..+ +..++.++..++....... .......+++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4579999999999999999999986 6677888877765543211 1111223333332 34599999985421
Q ss_pred CCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC-CCCC----CHHhhccCCc---ceEEEeCCCCH
Q 004384 265 PKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-PNSI----DPALRRFGRF---DREIDIGVPDE 328 (757)
Q Consensus 265 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~-~~~l----d~~l~r~~rf---~~~i~i~~p~~ 328 (757)
. . ......|..+++....... .+|.|||. ++.+ +..+.+ |+ ...+.+..++.
T Consensus 192 ~------t---~~~~~~l~~iin~r~~~~~-~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D------T---EWAREKVYNIIDSRYRKGL-PTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSY 251 (268)
T ss_pred C------C---HHHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcCh
Confidence 1 1 1233556667765433222 34446664 3333 333433 42 34455555553
No 395
>PRK08181 transposase; Validated
Probab=98.41 E-value=4.3e-07 Score=93.96 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=50.0
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccC-chhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g-~~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
..+++|+||||||||+||.+++.++ +...+.++.++++..+.. ........+++.... +.+|+|||++.+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~--~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDK--FDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhc--CCEEEEecccccc
Confidence 4579999999999999999999764 566777787777664321 112233445554433 4699999998754
No 396
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.41 E-value=1.7e-06 Score=98.72 Aligned_cols=197 Identities=18% Similarity=0.254 Sum_probs=109.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 503 (757)
...|+++.|.....+.+.+.+... . .....++|+|++||||+++|+++...+ ..+|+.++|+.+..
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~-------A----~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL-------A----MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH-------h----CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 346777777776555444433211 0 112349999999999999999987664 36899999987643
Q ss_pred c-----ccCchh-------HHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----
Q 004384 504 M-----WFGESE-------ANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----- 566 (757)
Q Consensus 504 ~-----~~g~~e-------~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----- 566 (757)
. .+|... ..-..+|+.|.. ..+|||||+.+.. .+...|+..+..-.
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~---GtL~LdeI~~L~~--------------~~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQANG---GSVLLDEIGEMSP--------------RMQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcCC---CEEEEeChhhCCH--------------HHHHHHHHHHhcCCcccCC
Confidence 1 112110 011224554433 4899999999743 34455555554311
Q ss_pred ----CCCeEEEEeeCCCC--C-----CCCccccCCCccc-eEEEecCCCH--HHHHHHHHHhhcc----CCCC-CccCHH
Q 004384 567 ----AKKTVFIIGATNRP--D-----IIDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRK----SPVS-KDVDLR 627 (757)
Q Consensus 567 ----~~~~v~vi~tTn~~--~-----~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~d~~ 627 (757)
...++-||+||+.+ + .+.+.|.. |+. ..|.+|+... ++...+++.++++ .+.. ..+.-+
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 11256788888764 1 23344444 654 4555665533 3444455555532 2221 123333
Q ss_pred HHHHHc-CCC--CHHHHHHHHHHHHHHHH
Q 004384 628 ALAKYT-QGF--SGADITEICQRACKYAI 653 (757)
Q Consensus 628 ~la~~~-~g~--sg~di~~~~~~a~~~a~ 653 (757)
.+.... ..| +-+++++++..|...+-
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~~~ 438 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQLE 438 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Confidence 333322 113 56888898888876543
No 397
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.40 E-value=2.1e-06 Score=98.79 Aligned_cols=53 Identities=30% Similarity=0.528 Sum_probs=43.9
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ 490 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~ 490 (757)
...|...|+++.|+++++..|...+.. .++++|+||||||||+++++++..+.
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 456778899999999999988766542 13699999999999999999998764
No 398
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-07 Score=102.09 Aligned_cols=48 Identities=33% Similarity=0.576 Sum_probs=39.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC 489 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~ 489 (757)
...|.|+.|++..|+.+...... ..++||+||||||||++|+-+.+.+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG---------------gHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG---------------GHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc---------------CCcEEEecCCCCchHHhhhhhcccC
Confidence 45789999999999998765432 3569999999999999999887654
No 399
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.38 E-value=4.7e-07 Score=87.13 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=68.4
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------hhccc-----hhHHHHHHHHHHHHhc
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------SKLAG-----ESESNLRKAFEEAEKN 250 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~--------~~~~g-----~~~~~l~~vf~~a~~~ 250 (757)
++.+.+++.+.|.||+|+|||||++.+++..... -+.+++.++. ....+ ....+-+..+..+...
T Consensus 20 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~ 99 (163)
T cd03216 20 SLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhc
Confidence 3456889999999999999999999999986421 2334332221 11011 1122345567778888
Q ss_pred CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 251 APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 251 ~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.|.++++||... .++......+.+++..+... +..+|.+|++++.+
T Consensus 100 ~p~illlDEP~~----------~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~ 145 (163)
T cd03216 100 NARLLILDEPTA----------ALTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEV 145 (163)
T ss_pred CCCEEEEECCCc----------CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 999999999543 23333445555555555333 34566677776543
No 400
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.37 E-value=7.3e-06 Score=92.45 Aligned_cols=172 Identities=18% Similarity=0.240 Sum_probs=97.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-------ccccCchhH-----HHHHHHH-----HHHh------
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-------TMWFGESEA-----NVREIFD-----KARQ------ 522 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-------~~~~g~~e~-----~i~~lf~-----~a~~------ 522 (757)
+-+||+|||||||||+++.||.+++..+.....+... ..|.+.... .-...|+ .++.
T Consensus 46 ~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~ 125 (519)
T PF03215_consen 46 RILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMS 125 (519)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 3488999999999999999999999877765433220 111111110 0011221 1111
Q ss_pred -----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee-C------CCC--------CC
Q 004384 523 -----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-T------NRP--------DI 582 (757)
Q Consensus 523 -----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t-T------n~~--------~~ 582 (757)
..+.||++||+-.+... ...++.+.|...+..-. ...+++|.+ + |.. ..
T Consensus 126 g~~~~~~~kvILVEDlPN~~~~----------~~~~f~~~L~~~l~~~~-~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L 194 (519)
T PF03215_consen 126 GSNSSSNKKVILVEDLPNVFHR----------DTSRFREALRQYLRSSR-CLPLVFIISETESLSGDNSYRSNSFTAERL 194 (519)
T ss_pred CCCcCCCceEEEeeccccccch----------hHHHHHHHHHHHHHcCC-CCCEEEEEecccccCCCCcccccchhhhhc
Confidence 24679999998765431 11333333333333211 116666666 1 111 14
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhhccC--------CCCCccC-HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--------PVSKDVD-LRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--------~~~~~~d-~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
+.+.++.-.++ .+|.|.+-...-.++-|+..+... ......+ ++.|++.+. +||+.++..-...|.
T Consensus 195 ~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 195 FPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred cCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 55555542244 488999888877766666665433 1111122 556665544 599999998888887
No 401
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.37 E-value=5.8e-07 Score=95.32 Aligned_cols=110 Identities=20% Similarity=0.336 Sum_probs=73.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh---------------------------------
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS--------------------------------- 230 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~~--------------------------------- 230 (757)
++.+.+++.+.|.||+||||||++|+||+..... -+.+++.++..
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~ 104 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKV 104 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhh
Confidence 3456778889999999999999999999864211 12222211100
Q ss_pred ---------------------------hccch--hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHH
Q 004384 231 ---------------------------KLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQ 281 (757)
Q Consensus 231 ---------------------------~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~ 281 (757)
.+..+ ..++-+..+..|....|.+|++|| +.+.++..+..+
T Consensus 105 ~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDE----------PlSaLD~kLR~~ 174 (352)
T COG3842 105 RKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDE----------PLSALDAKLREQ 174 (352)
T ss_pred cCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcC----------cccchhHHHHHH
Confidence 00000 012235567777788999999999 556667777777
Q ss_pred HHHHhhcccCCCeEEEEEecCCCC
Q 004384 282 LLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 282 Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
+...+..+....++.+|..||+.+
T Consensus 175 mr~Elk~lq~~~giT~i~VTHDqe 198 (352)
T COG3842 175 MRKELKELQRELGITFVYVTHDQE 198 (352)
T ss_pred HHHHHHHHHHhcCCeEEEEECCHH
Confidence 777777777777888888898764
No 402
>PF13173 AAA_14: AAA domain
Probab=98.37 E-value=2.1e-06 Score=79.03 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=69.4
Q ss_pred CceeeecCCCCChhHHHHHHHHHhC--CceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCC
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSS 543 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~ 543 (757)
+-++|+||.||||||+++.++.... .+++.++..+.......... +...+.......+.++|||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~----- 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD----- 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc-----
Confidence 3489999999999999999998876 67788877665432111111 22333322222567999999988621
Q ss_pred CCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC-C--ccccCCCccceEEEecCCCHHH
Q 004384 544 VGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII-D--PALLRPGRLDQLIYIPLPDEDS 606 (757)
Q Consensus 544 ~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l-d--~allrpgRf~~~i~~~~p~~~~ 606 (757)
....+..+... . .++-|+.|++....+ . ...+ +||.. .+++.|.+..|
T Consensus 76 -------~~~~lk~l~d~---~---~~~~ii~tgS~~~~l~~~~~~~l-~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 76 -------WEDALKFLVDN---G---PNIKIILTGSSSSLLSKDIAESL-AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -------HHHHHHHHHHh---c---cCceEEEEccchHHHhhcccccC-CCeEE-EEEECCCCHHH
Confidence 23344444432 1 223344444333222 1 1223 36877 77888887755
No 403
>PRK09183 transposase/IS protein; Provisional
Probab=98.37 E-value=6.9e-07 Score=92.51 Aligned_cols=71 Identities=24% Similarity=0.412 Sum_probs=49.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccC-chhHHHHHHHHHHHhCCCeEEEEecccch
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFG-ESEANVREIFDKARQSAPCVLFFDELDSI 536 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g-~~e~~i~~lf~~a~~~~p~il~iDEid~l 536 (757)
..+++|+||||||||+||.+++... +.....++.+++...+.. .....+..+|+... ..+.++++||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~-~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGV-MAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHh-cCCCEEEEcccccC
Confidence 4569999999999999999998764 556666777776643321 11223556666542 45679999999775
No 404
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.36 E-value=1.5e-06 Score=95.10 Aligned_cols=196 Identities=26% Similarity=0.384 Sum_probs=116.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 503 (757)
..+|++|.|.......+.+.+.. .-.....+||.|.+||||-.+|+++...+ +.||+.++|..+-.
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 46788888887776665554332 11234569999999999999999999876 56999999975531
Q ss_pred -------------cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-----
Q 004384 504 -------------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM----- 565 (757)
Q Consensus 504 -------------~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~----- 565 (757)
-|.|....--..+|+.|... -||+|||..+ ...+...||..|..-
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem--------------pl~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM--------------PLPLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC--------------CHHHHHHHHHHHhhceEEec
Confidence 12233332234577777666 8999999775 345667777766531
Q ss_pred CC----CCeEEEEeeCCCC--CCCCccccCCC---ccceEEEecCCCHHHH----HHHHHHhhc----cCCCC-CccC--
Q 004384 566 SA----KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEDSR----HQIFKACLR----KSPVS-KDVD-- 625 (757)
Q Consensus 566 ~~----~~~v~vi~tTn~~--~~ld~allrpg---Rf~~~i~~~~p~~~~r----~~Il~~~l~----~~~~~-~~~d-- 625 (757)
-+ .-.|=||+|||+. +.+...-.|-. |+. ++.+..|-..+| ..+.+.++. +++.. ..+.
T Consensus 373 G~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 11 2368899999984 23332222210 343 444444433332 333333333 33221 1122
Q ss_pred -HHHHHHHc-CCCCHHHHHHHHHHHHHHH
Q 004384 626 -LRALAKYT-QGFSGADITEICQRACKYA 652 (757)
Q Consensus 626 -~~~la~~~-~g~sg~di~~~~~~a~~~a 652 (757)
+..|.++. .| +-++++|++..|...+
T Consensus 452 a~~~L~~y~WPG-NVRELeNviER~v~~~ 479 (560)
T COG3829 452 ALALLLRYDWPG-NVRELENVIERAVNLV 479 (560)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence 23333322 22 5689999999888644
No 405
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=1.8e-05 Score=84.78 Aligned_cols=179 Identities=24% Similarity=0.329 Sum_probs=115.3
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHh----CC-ceEEEeCccccc----------cc----c-CchhHHHHHHHHHHHh
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANEC----QA-NFISVKGPELLT----------MW----F-GESEANVREIFDKARQ 522 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~----~~-~~i~v~~~~l~~----------~~----~-g~~e~~i~~lf~~a~~ 522 (757)
..++++.+.|-||+|||.+..-+-... .. ..+++++..+.. .+ + +.++......|+....
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~ 252 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTK 252 (529)
T ss_pred ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh
Confidence 445669999999999999888554332 22 346777765421 11 1 1123344455555433
Q ss_pred C--CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccC----CCccceE
Q 004384 523 S--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLR----PGRLDQL 596 (757)
Q Consensus 523 ~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allr----pgRf~~~ 596 (757)
+ .+-++++||+|.|+.+.. +++-+ |-++..+ ...++++||..|..|.-|..|.| .+--...
T Consensus 253 q~k~~~llVlDEmD~L~tr~~-----------~vLy~-lFewp~l-p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~ 319 (529)
T KOG2227|consen 253 QSKFMLLLVLDEMDHLITRSQ-----------TVLYT-LFEWPKL-PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKL 319 (529)
T ss_pred cccceEEEEechhhHHhhccc-----------ceeee-ehhcccC-CcceeeeeeehhhhhHHHHHhhhhhhccCCCCce
Confidence 3 367999999999984321 11111 1233333 35678999999999887765543 2334578
Q ss_pred EEecCCCHHHHHHHHHHhhccCCCCCccC--HHHHHHHcCCCCHHHHH---HHHHHHHHHHHHH
Q 004384 597 IYIPLPDEDSRHQIFKACLRKSPVSKDVD--LRALAKYTQGFSGADIT---EICQRACKYAIRE 655 (757)
Q Consensus 597 i~~~~p~~~~r~~Il~~~l~~~~~~~~~d--~~~la~~~~g~sg~di~---~~~~~a~~~a~~~ 655 (757)
+.|++++.++..+|++..+...+.....+ ++..|+...+.|| |++ .+|+.|...|-.+
T Consensus 320 l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e 382 (529)
T KOG2227|consen 320 LVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIE 382 (529)
T ss_pred eeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876554333 6677788888887 554 3566666555444
No 406
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.34 E-value=1.7e-06 Score=83.79 Aligned_cols=108 Identities=19% Similarity=0.380 Sum_probs=70.8
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhh------------------------------------
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEI------------------------------------ 228 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~--~~~~~v~~~~l------------------------------------ 228 (757)
+.+.+++.+.|+||+|||||||+|++...-. .--+.+++..+
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 4567888999999999999999999976421 11233333100
Q ss_pred ---------------------------hhhccch--hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHH
Q 004384 229 ---------------------------MSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIV 279 (757)
Q Consensus 229 ---------------------------~~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~ 279 (757)
...|..+ ..++-|..+..|....|.++++|| +.+.++..++
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE----------PTSALDPElv 172 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE----------PTSALDPELV 172 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC----------CcccCCHHHH
Confidence 0011111 112335567788888999999999 4455566777
Q ss_pred HHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 280 SQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 280 ~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
...+..|..+...+ ...+..||...
T Consensus 173 ~EVL~vm~~LA~eG-mTMivVTHEM~ 197 (240)
T COG1126 173 GEVLDVMKDLAEEG-MTMIIVTHEMG 197 (240)
T ss_pred HHHHHHHHHHHHcC-CeEEEEechhH
Confidence 88888888776654 56666777653
No 407
>PRK09183 transposase/IS protein; Provisional
Probab=98.34 E-value=1.8e-06 Score=89.34 Aligned_cols=75 Identities=25% Similarity=0.472 Sum_probs=51.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
+..+.+++|+||||||||+|+.+++... +..+..++..++...+... ....+..+++.. ...+.+++|||++...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 3557889999999999999999997653 5566677776665433211 111244555544 3456799999997653
No 408
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.33 E-value=4.5e-06 Score=80.41 Aligned_cols=118 Identities=27% Similarity=0.481 Sum_probs=69.8
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh-----c
Q 004384 161 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-----L 232 (757)
Q Consensus 161 ~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~-----~ 232 (757)
.|-+..++++++.+.... ..+.+|||+|++||||+.+|++|-... +.+|+.++|..+... .
T Consensus 2 iG~s~~m~~~~~~~~~~a-----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAA-----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHT-----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHh-----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 455566666665554322 224679999999999999999998764 468999999765322 1
Q ss_pred cchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc-----cC----CCeEE
Q 004384 233 AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----KS----RAHVI 296 (757)
Q Consensus 233 ~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~-----~~----~~~v~ 296 (757)
.|... ..-...|+.|.. ..||||||+.|.+. +...|+..++.- .. ..++-
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-----------LQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-----------HHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-----------HHHHHHHHHhhchhccccccccccccce
Confidence 11100 001134555544 49999999988542 345566666521 11 23678
Q ss_pred EEEecCC
Q 004384 297 VIGATNR 303 (757)
Q Consensus 297 vI~atn~ 303 (757)
+|++|+.
T Consensus 137 iI~st~~ 143 (168)
T PF00158_consen 137 IIASTSK 143 (168)
T ss_dssp EEEEESS
T ss_pred EEeecCc
Confidence 8888875
No 409
>PF13173 AAA_14: AAA domain
Probab=98.32 E-value=3.6e-06 Score=77.47 Aligned_cols=70 Identities=31% Similarity=0.401 Sum_probs=46.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSI 263 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~--~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l 263 (757)
.+.++|+||.||||||+++.++..+. ..++.++..+.......... +...+.......+.++||||++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 35699999999999999999998876 66777777654332111110 222222222235679999999877
No 410
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.32 E-value=2.3e-06 Score=92.05 Aligned_cols=126 Identities=25% Similarity=0.369 Sum_probs=82.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHH----hCCeEEEEechhh
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCINGPEI 228 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~----l~~~~~~v~~~~l 228 (757)
....++++.|-+...+++++-+.. + .+.+.+|||+|++||||+.+|++|... ...+|+.+||..+
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~---~--------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~ 141 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA---Y--------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAY 141 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh---h--------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHh
Confidence 344577889988888888777654 1 145678999999999999999998633 3568999999876
Q ss_pred hhhccch------------hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc-----c-
Q 004384 229 MSKLAGE------------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-----K- 290 (757)
Q Consensus 229 ~~~~~g~------------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~-----~- 290 (757)
....... ....-.-+|+.|.. ..||+|||+.+.+. ....|+..++.- .
T Consensus 142 ~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-----------~Q~kLl~~le~g~~~rvG~ 207 (403)
T COG1221 142 SENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-----------GQEKLLRVLEEGEYRRVGG 207 (403)
T ss_pred CcCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-----------HHHHHHHHHHcCceEecCC
Confidence 4432110 00111223444433 48999999988643 235567777641 1
Q ss_pred ---CCCeEEEEEecCC
Q 004384 291 ---SRAHVIVIGATNR 303 (757)
Q Consensus 291 ---~~~~v~vI~atn~ 303 (757)
....|.+|++|+.
T Consensus 208 ~~~~~~dVRli~AT~~ 223 (403)
T COG1221 208 SQPRPVDVRLICATTE 223 (403)
T ss_pred CCCcCCCceeeecccc
Confidence 1236778888773
No 411
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.32 E-value=3.5e-06 Score=77.64 Aligned_cols=98 Identities=22% Similarity=0.421 Sum_probs=59.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh--------CCeEEEEechhhhh------h--------ccc--hhHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET--------GAFFFCINGPEIMS------K--------LAG--ESESNLRKAFEEA 247 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l--------~~~~~~v~~~~l~~------~--------~~g--~~~~~l~~vf~~a 247 (757)
...++|+||+|+|||++++.++..+ ...++.++++...+ . ... ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4679999999999999999999887 56677777654321 0 001 1223334444555
Q ss_pred HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004384 248 EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 301 (757)
Q Consensus 248 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~at 301 (757)
......+|+|||+|.+. + ....+.|..+++ .....++++|+.
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 55555699999999874 1 345566666666 233345555543
No 412
>PRK08181 transposase; Validated
Probab=98.32 E-value=1.8e-06 Score=89.35 Aligned_cols=101 Identities=23% Similarity=0.412 Sum_probs=61.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchh-HHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
.+.+++|+||||||||+|+.+++.++ +..++.++..+++....... .......++.. ..+.+|+|||+......
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~ 182 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKD 182 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCC
Confidence 45789999999999999999998754 56677777777765442211 11222333333 34579999999865432
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 267 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
. .....|+++++....+. -+|.+||.+
T Consensus 183 ~---------~~~~~Lf~lin~R~~~~--s~IiTSN~~ 209 (269)
T PRK08181 183 Q---------AETSVLFELISARYERR--SILITANQP 209 (269)
T ss_pred H---------HHHHHHHHHHHHHHhCC--CEEEEcCCC
Confidence 1 12244555665433332 244466654
No 413
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.32 E-value=2.8e-06 Score=84.54 Aligned_cols=66 Identities=30% Similarity=0.479 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceE
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDRE 320 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~ 320 (757)
|..+..|....|.+|+-|| +.+.++..-...++.++..+....+..+|.+||++ .+.. +.++.
T Consensus 150 RVAIARAL~~~P~iilADE----------PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~-----~lA~--~~dr~ 212 (226)
T COG1136 150 RVAIARALINNPKIILADE----------PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP-----ELAK--YADRV 212 (226)
T ss_pred HHHHHHHHhcCCCeEEeeC----------ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH-----HHHH--hCCEE
Confidence 4556677778899999999 44445555556677777766555566777788865 3333 55566
Q ss_pred EEe
Q 004384 321 IDI 323 (757)
Q Consensus 321 i~i 323 (757)
+.+
T Consensus 213 i~l 215 (226)
T COG1136 213 IEL 215 (226)
T ss_pred EEE
Confidence 554
No 414
>PRK06526 transposase; Provisional
Probab=98.31 E-value=6.2e-07 Score=92.27 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=45.0
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCc-hhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
+.+++|+||||||||+||.+++.++ +.....+..+++....... ........+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 4679999999999999999999875 4444455555554332110 111222233322 235799999998864
No 415
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.31 E-value=6.2e-06 Score=92.81 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=35.1
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.|+|+.|....++.+.-. +..+.+++|+|||||||||+++.+++.+.
T Consensus 190 d~~dv~Gq~~~~~al~~a---------------a~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA---------------AAGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CHHHhcCcHHHHhhhhhh---------------ccCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 577888877664443322 23457899999999999999999998653
No 416
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.29 E-value=1.7e-06 Score=91.28 Aligned_cols=110 Identities=21% Similarity=0.350 Sum_probs=71.9
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------------------------------hc
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------------------------------KL 232 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~~-------------------------------~~ 232 (757)
++.+..++.+.|.||+||||||++|+||+..... -+.+++.++.. +.
T Consensus 23 ~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~ 102 (338)
T COG3839 23 NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKL 102 (338)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhh
Confidence 3456788899999999999999999999865311 12222111100 00
Q ss_pred c----chhH--------------------------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 233 A----GESE--------------------------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 233 ~----g~~~--------------------------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
. .+.. ++-+..+..|.-..|.++++|| +.+.++..+...+
T Consensus 103 ~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DE----------PlSnLDa~lR~~m 172 (338)
T COG3839 103 RGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE----------PLSNLDAKLRVLM 172 (338)
T ss_pred CCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecC----------chhHhhHHHHHHH
Confidence 0 0111 1123356666777899999999 6666777777777
Q ss_pred HHHhhcccCCCeEEEEEecCCCC
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~ 305 (757)
...+..+..+.++.+|-.||+..
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq~ 195 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQV 195 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCHH
Confidence 77777777767778888888753
No 417
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.29 E-value=1.3e-06 Score=86.34 Aligned_cols=31 Identities=26% Similarity=0.463 Sum_probs=27.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+..+..+.|+||+||||||++++|...+
T Consensus 21 ~l~I~~gef~vliGpSGsGKTTtLkMINrLi 51 (309)
T COG1125 21 NLTIEEGEFLVLIGPSGSGKTTTLKMINRLI 51 (309)
T ss_pred eEEecCCeEEEEECCCCCcHHHHHHHHhccc
Confidence 4467788899999999999999999998765
No 418
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.29 E-value=1.4e-06 Score=84.61 Aligned_cols=110 Identities=15% Similarity=0.056 Sum_probs=65.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh--hhhcc-chhHHHHHHHHHHHHhcCCeEEEEcccc
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI--MSKLA-GESESNLRKAFEEAEKNAPSIIFIDEID 261 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l--~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid 261 (757)
+.+++++.+.|.||+|+|||||++++++.+... -+.+++..+ ..... -....+-+..+..+....|.++++||..
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 356788999999999999999999999976321 133333211 00100 0112334455677777889999999953
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 262 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
. .++......+...+..+..+.+..+|.+||+++.
T Consensus 100 s----------~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 100 A----------YLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred c----------cCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 3 2333334445555544433332455667776543
No 419
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.28 E-value=1.1e-06 Score=92.82 Aligned_cols=71 Identities=31% Similarity=0.469 Sum_probs=48.9
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCc-hhHHHHHHHHHHHhCCCeEEEEecccch
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDSI 536 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~e~~i~~lf~~a~~~~p~il~iDEid~l 536 (757)
..+|++|+||+|||||+|+.++|.++ +.+...+..++++...... ........++.... ..+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~--~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKE--APVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcC--CCEEEEecCCCc
Confidence 34789999999999999999999987 5667777777765433211 01123344444433 359999999763
No 420
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.28 E-value=3.1e-06 Score=78.39 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=28.5
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.++|.||+|||||||.+++|....
T Consensus 23 sl~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 23 SLSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 45678999999999999999999999998763
No 421
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.27 E-value=2.2e-06 Score=87.16 Aligned_cols=56 Identities=21% Similarity=0.372 Sum_probs=42.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
+..+..|..-.|.+|++|| +.+.++..+...|..++..+..+.++..+..|+++++
T Consensus 145 RVALARALA~eP~vLLLDE----------Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~ee 200 (345)
T COG1118 145 RVALARALAVEPKVLLLDE----------PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE 200 (345)
T ss_pred HHHHHHHhhcCCCeEeecC----------CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHH
Confidence 4456677778899999999 6666777777777777777767777888888987653
No 422
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.27 E-value=1.1e-05 Score=85.96 Aligned_cols=160 Identities=23% Similarity=0.362 Sum_probs=99.0
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEec--------
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCING-------- 225 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~-------- 225 (757)
.+.|.-+.|.+..+..|- +.--. +.-.++||-|+.|+||||++|+|+..++..-+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~----l~av~---------P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~ 79 (423)
T COG1239 13 NLPFTAIVGQDPLKLALG----LNAVD---------PQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDD 79 (423)
T ss_pred ccchhhhcCchHHHHHHh----hhhcc---------cccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCC
Confidence 456777889887655542 21111 223579999999999999999999988643322222
Q ss_pred -----h-------------------hhhhhccchhHHH-HHHH-HHHHHh-------------cCCeEEEEcccccccCC
Q 004384 226 -----P-------------------EIMSKLAGESESN-LRKA-FEEAEK-------------NAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 226 -----~-------------------~l~~~~~g~~~~~-l~~v-f~~a~~-------------~~p~il~iDEid~l~~~ 266 (757)
. .+.+...+.++.+ ++.+ ++.+.. ..-.|+++||+..|.
T Consensus 80 P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~-- 157 (423)
T COG1239 80 PEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--
Confidence 0 0111122333331 1111 111111 122599999987663
Q ss_pred CCCCchHHHHHHHHHHHHHhhc-----------ccCCCeEEEEEecCCCC-CCCHHhhccCCcceEEEeCCCC-HHHHHH
Q 004384 267 REKTHGEVERRIVSQLLTLMDG-----------LKSRAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVPD-EVGRLE 333 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~-----------~~~~~~v~vI~atn~~~-~ld~~l~r~~rf~~~i~i~~p~-~~~r~~ 333 (757)
..++..|++.+.. +....++++|||+|+.+ .|-|.|+. ||...+.+..|. .++|.+
T Consensus 158 ---------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 158 ---------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred ---------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHH
Confidence 4566777777653 22345789999999764 67777876 899888876664 677888
Q ss_pred HHHHHh
Q 004384 334 VLRIHT 339 (757)
Q Consensus 334 il~~~~ 339 (757)
|.....
T Consensus 227 Ii~r~~ 232 (423)
T COG1239 227 IIRRRL 232 (423)
T ss_pred HHHHHH
Confidence 876543
No 423
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.26 E-value=8.8e-06 Score=87.39 Aligned_cols=149 Identities=22% Similarity=0.284 Sum_probs=88.2
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh--
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK-- 231 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~-- 231 (757)
++++.|-+..++++.+.+..-. ....+|+|+|++||||+++|+++-... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a-----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4568888888888777665421 335679999999999999999997654 368999999765321
Q ss_pred ---ccchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--C-------C
Q 004384 232 ---LAGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S-------R 292 (757)
Q Consensus 232 ---~~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--~-------~ 292 (757)
..|... ......+..+ ....|||||++.+... +...|+..++.-. . .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-----------VQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 111000 0001122222 3468999999987532 3345566654311 0 1
Q ss_pred CeEEEEEecCCC-------CCCCHHhhccCCcceEEEeCCCCHHHHHH
Q 004384 293 AHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 333 (757)
Q Consensus 293 ~~v~vI~atn~~-------~~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 333 (757)
..+.+|++|+.. ..+.+.|.. ||. .+.+..|...+|.+
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~e 184 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQS 184 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhh
Confidence 246777777643 233444443 552 24455666666644
No 424
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.26 E-value=2e-06 Score=87.67 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=63.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCc---hhHHHHHHHHHHHhCCCeEEEEecccchhcc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~---~e~~i~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
.+++|+|+||||||+|+.++|.++ +..++.+..+++....... .......+++... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 479999999999999999999987 5677777877776533221 1122334555443 356999999988531
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
......++.+++..= ...+.-+|.|||..
T Consensus 177 --------s~~~~~~l~~Ii~~R----y~~~~~tiitSNl~ 205 (244)
T PRK07952 177 --------SRYEKVIINQIVDRR----SSSKRPTGMLTNSN 205 (244)
T ss_pred --------CHHHHHHHHHHHHHH----HhCCCCEEEeCCCC
Confidence 123344555555431 11223577788863
No 425
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.26 E-value=6.1e-06 Score=76.08 Aligned_cols=98 Identities=26% Similarity=0.386 Sum_probs=61.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHh--------CCceEEEeCcccccc--------------ccC--chhHHHHHHHHHHH
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC--------QANFISVKGPELLTM--------------WFG--ESEANVREIFDKAR 521 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~--------~~~~i~v~~~~l~~~--------------~~g--~~e~~i~~lf~~a~ 521 (757)
+.++++||||+|||++++.++... ..+++.+..+...+. ..+ ........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 458999999999999999999987 667777765543210 001 12233344555555
Q ss_pred hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCC
Q 004384 522 QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATN 578 (757)
Q Consensus 522 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn 578 (757)
.....+|+|||+|.+. ...+++.+...++ ...-+++++|+.+
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~--~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN--ESNIKVVLVGTPE 126 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence 5555699999999974 1466677766666 3334566666653
No 426
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.26 E-value=2.6e-05 Score=83.72 Aligned_cols=145 Identities=22% Similarity=0.269 Sum_probs=82.5
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhcc----
Q 004384 161 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLA---- 233 (757)
Q Consensus 161 ~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~---- 233 (757)
.|-...++++.+.+..-- ....+|||+|++||||+++|++|-... +.+|+.++|..+.....
T Consensus 2 iG~S~~m~~~~~~~~~~a-----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLA-----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CcCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 345555555555544311 235679999999999999999996654 46899999976532111
Q ss_pred -chhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc---------CCCeEE
Q 004384 234 -GESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAHVI 296 (757)
Q Consensus 234 -g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---------~~~~v~ 296 (757)
|... ..-...|+.+ ....||||||+.+... +...|+..++.-. ....+.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-----------VQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-----------HHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1000 0000113332 3468999999987532 3345666654321 123567
Q ss_pred EEEecCCC-------CCCCHHhhccCCcceEEEeCCCCHHHHHH
Q 004384 297 VIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGRLE 333 (757)
Q Consensus 297 vI~atn~~-------~~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 333 (757)
+|++|+.. ..+.+.|.. |+. .+.+..|...+|.+
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~e 177 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQE 177 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhh
Confidence 88887643 122334433 442 34566677666654
No 427
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.25 E-value=2.1e-05 Score=89.87 Aligned_cols=193 Identities=22% Similarity=0.276 Sum_probs=108.2
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhc
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL 232 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~ 232 (757)
.+.++.|....++++.+.+..- ...+.+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~ 253 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL 253 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH
Confidence 5667889988888887777641 1335679999999999999999998764 4689999997653211
Q ss_pred -----cchhHH----H---HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc---------C
Q 004384 233 -----AGESES----N---LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 291 (757)
Q Consensus 233 -----~g~~~~----~---l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---------~ 291 (757)
.|.... . -...|+.+ ....||||||+.+... +...|+..++.-. .
T Consensus 254 ~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 254 AESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-----------LQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-----------HHHHHHHHHhcCCEeeCCCCcce
Confidence 110000 0 00123332 3458999999988532 3345555554321 1
Q ss_pred CCeEEEEEecCCCC-------CCCHHhhccCCcceEEEeCCCCHHHHHHHHH----HH----hcCCC---C-CCchhhhH
Q 004384 292 RAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLEVLR----IH----TKNMK---L-SDDVDLER 352 (757)
Q Consensus 292 ~~~v~vI~atn~~~-------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~----~~----~~~~~---l-~~~~~l~~ 352 (757)
...+-+|++|+..- .+.+.|.. |+. .+.+..|...+|.+-+. .+ ..++. . ....-+..
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~ 396 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAA 396 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 12567888887531 22333322 332 34566677666654222 11 11111 1 11122344
Q ss_pred HhHhcCCCchhHHHHHHHHHHHHH
Q 004384 353 IAKDTHGYVGADLAALCTEAALQC 376 (757)
Q Consensus 353 la~~t~g~~~~dl~~l~~~a~~~~ 376 (757)
|....=-.+-.++++++.+++..+
T Consensus 397 L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 397 LLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred HHhCCCCCcHHHHHHHHHHHHHhc
Confidence 444333334466777777766543
No 428
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.25 E-value=5e-06 Score=84.90 Aligned_cols=157 Identities=18% Similarity=0.194 Sum_probs=99.6
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc------eEEEeCcccc
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISVKGPELL 502 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~------~i~v~~~~l~ 502 (757)
..+++.+.+++...+.+.... ..-.++|+|||||+|||+...+.|..+-.+ ...++.++-.
T Consensus 39 ~l~dv~~~~ei~st~~~~~~~-------------~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~r 105 (360)
T KOG0990|consen 39 FLGIVIKQEPIWSTENRYSGM-------------PGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDR 105 (360)
T ss_pred hhhhHhcCCchhhHHHHhccC-------------CCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCcc
Confidence 455666666666665554221 112279999999999999999999876442 1122232211
Q ss_pred ccccCchhHHHHHHHHHHHh-------CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 503 TMWFGESEANVREIFDKARQ-------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~-------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
+. ...+.--..|..++. ..+..+++||+|++. ....|+|-...+.+..+.++ ..
T Consensus 106 gi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------------~~AQnALRRviek~t~n~rF--~i 166 (360)
T KOG0990|consen 106 GI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------------RDAQNALRRVIEKYTANTRF--AT 166 (360)
T ss_pred CC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------------HHHHHHHHHHHHHhccceEE--EE
Confidence 10 112333456666653 367899999999964 34445555555555544343 35
Q ss_pred eCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC
Q 004384 576 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 620 (757)
Q Consensus 576 tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 620 (757)
-+|.|..+-|++.. ||. .+.|.+.+...-...+.++.+..+.
T Consensus 167 i~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~ 208 (360)
T KOG0990|consen 167 ISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQK 208 (360)
T ss_pred eccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchh
Confidence 66999999999987 777 5667777777777777777755543
No 429
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.25 E-value=3.1e-06 Score=83.66 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=41.5
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
|-.+..|....|.+|++||. .+.++..+..++++++..++...+..++..+++..
T Consensus 149 RiaIARAL~~~PklLIlDEp----------tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~ 203 (252)
T COG1124 149 RIAIARALIPEPKLLILDEP----------TSALDVSVQAQILNLLLELKKERGLTYLFISHDLA 203 (252)
T ss_pred HHHHHHHhccCCCEEEecCc----------hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH
Confidence 44566777788999999994 44555667788888888887777777887888754
No 430
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.25 E-value=7e-07 Score=86.95 Aligned_cols=70 Identities=31% Similarity=0.550 Sum_probs=46.7
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCc-hhHHHHHHHHHHHhCCCeEEEEecccc
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE-SEANVREIFDKARQSAPCVLFFDELDS 535 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~-~e~~i~~lf~~a~~~~p~il~iDEid~ 535 (757)
...+++|+||||+|||+||.+++.++ +.+...++.++++...-.. ........++..... .+|+|||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~--dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRV--DLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTS--SCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccc--cEecccccce
Confidence 34679999999999999999999865 6677888888876543211 112233445554443 5999999865
No 431
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.24 E-value=1.5e-05 Score=76.44 Aligned_cols=132 Identities=25% Similarity=0.366 Sum_probs=82.7
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----------------------
Q 004384 162 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------------------- 218 (757)
Q Consensus 162 G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~----------------------- 218 (757)
|.++.++.+...+..- .-+..+||+||+|+||+++|+.+|..+-.
T Consensus 1 gq~~~~~~L~~~~~~~------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~ 68 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHP 68 (162)
T ss_dssp S-HHHHHHHHHHHHCT------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CT
T ss_pred CcHHHHHHHHHHHHcC------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCc
Confidence 5677777777776541 22446899999999999999999987632
Q ss_pred eEEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004384 219 FFFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 294 (757)
Q Consensus 219 ~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 294 (757)
.++.++...... .-....++.+..... .....|++|||+|.+.. ...+.|+..|+.... +
T Consensus 69 d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~--~ 132 (162)
T PF13177_consen 69 DFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE--N 132 (162)
T ss_dssp TEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT--T
T ss_pred ceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC--C
Confidence 123333221100 012345555555432 23457999999998753 345778888887554 6
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeC
Q 004384 295 VIVIGATNRPNSIDPALRRFGRFDREIDIG 324 (757)
Q Consensus 295 v~vI~atn~~~~ld~~l~r~~rf~~~i~i~ 324 (757)
+.+|.+|+.++.+-+.+++ |. ..+.++
T Consensus 133 ~~fiL~t~~~~~il~TI~S--Rc-~~i~~~ 159 (162)
T PF13177_consen 133 TYFILITNNPSKILPTIRS--RC-QVIRFR 159 (162)
T ss_dssp EEEEEEES-GGGS-HHHHT--TS-EEEEE-
T ss_pred EEEEEEECChHHChHHHHh--hc-eEEecC
Confidence 7777788889999999988 66 345544
No 432
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.24 E-value=8.7e-06 Score=89.20 Aligned_cols=153 Identities=28% Similarity=0.396 Sum_probs=93.7
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh-
Q 004384 155 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS- 230 (757)
Q Consensus 155 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~- 230 (757)
-+|++|.|-...+.++.+.... .......|||.|.+||||..+|++|-+.. +.+|+.+||..+-.
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr-----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKR-----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHh-----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 4678888888877776666543 12345679999999999999999997654 57899999965422
Q ss_pred --------hccchhHHHH----HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc---------
Q 004384 231 --------KLAGESESNL----RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL--------- 289 (757)
Q Consensus 231 --------~~~g~~~~~l----~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~--------- 289 (757)
...|...... .-.|+.|.. ..||+|||..+.. .+...|+..+..-
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~t~ 376 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGGTK 376 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCH-----------HHHHHHHHHHhhceEEecCCCC
Confidence 1112111111 124444433 4799999977642 2334555555421
Q ss_pred cCCCeEEEEEecCCCCCCCHHhhc-------cCCcceEEEeCCCCHHHHHHHH
Q 004384 290 KSRAHVIVIGATNRPNSIDPALRR-------FGRFDREIDIGVPDEVGRLEVL 335 (757)
Q Consensus 290 ~~~~~v~vI~atn~~~~ld~~l~r-------~~rf~~~i~i~~p~~~~r~~il 335 (757)
.....|-||+|||+. +..++.. .-|+ ..+.+..|...+|.+-+
T Consensus 377 ~~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI 426 (560)
T COG3829 377 PIPVDVRIIAATNRN--LEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDI 426 (560)
T ss_pred ceeeEEEEEeccCcC--HHHHHhcCcchhhheeee-ceeeecCCCcccCcchH
Confidence 112368899999964 2222211 1133 34677778877776543
No 433
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.24 E-value=3.4e-06 Score=96.08 Aligned_cols=132 Identities=19% Similarity=0.213 Sum_probs=80.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE----echhhhhhcc-----chhHHHHHHHHHHHHhcCCeEEEEcccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKLA-----GESESNLRKAFEEAEKNAPSIIFIDEID 261 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v----~~~~l~~~~~-----g~~~~~l~~vf~~a~~~~p~il~iDEid 261 (757)
..-+|||+|+||||||++++.++...+...+.. ++..+..... |+..-.-+ .+.. ....+++|||++
T Consensus 235 ~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G-~l~~---A~~Gil~iDEi~ 310 (509)
T smart00350 235 GDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGG-ALVL---ADNGVCCIDEFD 310 (509)
T ss_pred ccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCc-cEEe---cCCCEEEEechh
Confidence 345799999999999999999999876432221 1111211100 10000000 0111 223599999999
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC-------------CCCHHhhccCCc
Q 004384 262 SIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN-------------SIDPALRRFGRF 317 (757)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----------~~~~v~vI~atn~~~-------------~ld~~l~r~~rf 317 (757)
.+.+. ....|+..|+.-. -...+.||+++|+.+ .+++++.+ ||
T Consensus 311 ~l~~~-----------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RF 377 (509)
T smart00350 311 KMDDS-----------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RF 377 (509)
T ss_pred hCCHH-----------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ce
Confidence 87532 2345566664321 124678999999753 47888887 99
Q ss_pred ceEE-EeCCCCHHHHHHHHHHHh
Q 004384 318 DREI-DIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 318 ~~~i-~i~~p~~~~r~~il~~~~ 339 (757)
+..+ ....|+.+...+|.+..+
T Consensus 378 dLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 378 DLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred eeEEEecCCCChHHHHHHHHHHH
Confidence 7755 457788888888876543
No 434
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.6e-07 Score=94.99 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=28.2
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.++|+|++|||||||++.+++.+.
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~ 55 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK 55 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCc
Confidence 34567889999999999999999999999764
No 435
>PRK12377 putative replication protein; Provisional
Probab=98.24 E-value=2.4e-06 Score=87.27 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=46.8
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCch--hHHHHHHHHHHHhCCCeEEEEecccch
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES--EANVREIFDKARQSAPCVLFFDELDSI 536 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~--e~~i~~lf~~a~~~~p~il~iDEid~l 536 (757)
.+++|+||||||||+||.++|..+ +..++.+..++++...-... ......+++... ...+|+|||+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~--~~dLLiIDDlg~~ 175 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC--KVDLLVLDEIGIQ 175 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 579999999999999999999886 45667777777765321100 001123444433 3469999999764
No 436
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.24 E-value=2.1e-06 Score=84.19 Aligned_cols=112 Identities=20% Similarity=0.279 Sum_probs=66.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh---------------------------hhccch-
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM---------------------------SKLAGE- 235 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~---------------------------~~~~g~- 235 (757)
++.+.+++.++|.||+|+|||||++++++.+... -+.+++.++. ......
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~L 98 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNEL 98 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccC
Confidence 3456788999999999999999999999976321 1333332210 000000
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 236 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 236 -~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
...+-+..+..+....|.++++||...- ++......+.+.+..+....+..+|.++++++.+
T Consensus 99 S~G~~qrl~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 99 SGGERQRVLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1122234466667788999999995432 3333344555555554433234556677776543
No 437
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.23 E-value=2.4e-06 Score=80.32 Aligned_cols=104 Identities=18% Similarity=0.263 Sum_probs=62.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhh---hhhccchhHHHHHHHHHHHHhcCCeEEEEcccc
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEI---MSKLAGESESNLRKAFEEAEKNAPSIIFIDEID 261 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l---~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid 261 (757)
+.+.+++.+.|.||+|+|||||++++++..... -+.+++... ...+.+ ...-+..+..+....|.++++||..
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~--G~~~rv~laral~~~p~illlDEP~ 98 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSG--GEKMRLALAKLLLENPNLLLLDEPT 98 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCH--HHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 456788999999999999999999999976421 122222110 011111 1233444667777889999999954
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 262 SIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
.-+ +......+.+.+..+. ..++.+|++++.
T Consensus 99 ~~L----------D~~~~~~l~~~l~~~~----~til~~th~~~~ 129 (144)
T cd03221 99 NHL----------DLESIEALEEALKEYP----GTVILVSHDRYF 129 (144)
T ss_pred cCC----------CHHHHHHHHHHHHHcC----CEEEEEECCHHH
Confidence 332 2233344555554442 255667776543
No 438
>PRK06526 transposase; Provisional
Probab=98.23 E-value=2.5e-06 Score=87.87 Aligned_cols=72 Identities=21% Similarity=0.433 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEccccccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
.+.+++|+||||||||+|+.+++.++ +..+..+...+++...... ....+...+... ..+.+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 46789999999999999999998765 4455555555554433211 011122223222 346799999998764
No 439
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.21 E-value=2.1e-06 Score=87.51 Aligned_cols=160 Identities=21% Similarity=0.371 Sum_probs=88.7
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCce---EEEeC-ccc---------------------cc-c------------cc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANF---ISVKG-PEL---------------------LT-M------------WF 506 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~---i~v~~-~~l---------------------~~-~------------~~ 506 (757)
...++|+||.|+|||+|++.+.......- +.+.. ... .. . ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 45699999999999999999999873211 11111 000 00 0 00
Q ss_pred CchhHHHHHHHHHHHhCC-CeEEEEecccchh-cccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeE-EEEeeCCC--C-
Q 004384 507 GESEANVREIFDKARQSA-PCVLFFDELDSIA-TQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNR--P- 580 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~~~-p~il~iDEid~l~-~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v-~vi~tTn~--~- 580 (757)
......+..+++...... ..||+|||++.+. ..+ .....+..|...++......++ +|+++++. .
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 112344666666655543 3899999999997 211 2356667777777664444443 44444442 1
Q ss_pred C--CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC---CccCHHHHHHHcCCCC
Q 004384 581 D--IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS---KDVDLRALAKYTQGFS 637 (757)
Q Consensus 581 ~--~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~---~~~d~~~la~~~~g~s 637 (757)
+ .-+..+. +|+.. +++++.+.++..++++...++. .. .+.+++.+...+.|..
T Consensus 171 ~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 171 EFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp HTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-H
T ss_pred HhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCH
Confidence 1 1223344 38887 9999999999999999987766 32 4556788888887743
No 440
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.21 E-value=4e-05 Score=91.04 Aligned_cols=150 Identities=27% Similarity=0.393 Sum_probs=91.1
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 004384 155 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 231 (757)
Q Consensus 155 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~ 231 (757)
..|+++.|....++.+.+.+..-- ....+|+|+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a-----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVA-----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457789998888888776665311 234679999999999999999997754 468999999765321
Q ss_pred -----ccch--------hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--------
Q 004384 232 -----LAGE--------SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 290 (757)
Q Consensus 232 -----~~g~--------~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-------- 290 (757)
..|. ...... .|+.+ ..++|||||++.+... +...|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g-~le~a---~~GtL~Ldei~~L~~~-----------~Q~~L~~~l~~~~~~~~g~~~ 506 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIG-RFELA---DKSSLFLDEVGDMPLE-----------LQPKLLRVLQEQEFERLGSNK 506 (686)
T ss_pred HhhhhhcCcccccccccccchhh-HHHhc---CCCeEEEechhhCCHH-----------HHHHHHHHHHhCCEEeCCCCC
Confidence 1111 111111 23332 3469999999987532 3345555554311
Q ss_pred -CCCeEEEEEecCCCC-------CCCHHhhccCCcceEEEeCCCCHHHHHH
Q 004384 291 -SRAHVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 333 (757)
Q Consensus 291 -~~~~v~vI~atn~~~-------~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 333 (757)
....+-+|++|+..- .+...+-. |+ ..+.+..|...+|.+
T Consensus 507 ~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l-~~~~i~lPpLreR~~ 554 (686)
T PRK15429 507 IIQTDVRLIAATNRDLKKMVADREFRSDLYY--RL-NVFPIHLPPLRERPE 554 (686)
T ss_pred cccceEEEEEeCCCCHHHHHHcCcccHHHHh--cc-CeeEEeCCChhhhHh
Confidence 123567888887531 11222221 33 245667777777755
No 441
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.21 E-value=1.2e-05 Score=81.84 Aligned_cols=181 Identities=29% Similarity=0.415 Sum_probs=91.2
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE---EEEec---h------hh
Q 004384 161 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF---FCING---P------EI 228 (757)
Q Consensus 161 ~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~---~~v~~---~------~l 228 (757)
.|-++++++|.+.+.. .+...++|+||.|+|||+|++.+...+...- +.+.. . .+
T Consensus 2 ~gR~~el~~l~~~l~~-------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 2 FGREKELEKLKELLES-------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp -S-HHHHHHHHHCHHH---------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 3556666666665542 2356799999999999999999999873211 11111 0 00
Q ss_pred -------------hhh-c------------cchhHHHHHHHHHHHHhcC-CeEEEEccccccc-CCCCCCchHHHHHHHH
Q 004384 229 -------------MSK-L------------AGESESNLRKAFEEAEKNA-PSIIFIDEIDSIA-PKREKTHGEVERRIVS 280 (757)
Q Consensus 229 -------------~~~-~------------~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~-~~~~~~~~~~~~~~~~ 280 (757)
... . .......+..+++...... ..+++|||++.+. ... . ...+..
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~--~----~~~~~~ 142 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE--E----DKDFLK 142 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT--T----THHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc--c----hHHHHH
Confidence 000 0 0112334555666655433 3799999999998 211 1 123455
Q ss_pred HHHHHhhcccCCCeEEEEEecCCCC---C-CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC-C-CCchhhhHHh
Q 004384 281 QLLTLMDGLKSRAHVIVIGATNRPN---S-IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-L-SDDVDLERIA 354 (757)
Q Consensus 281 ~Ll~~l~~~~~~~~v~vI~atn~~~---~-ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-l-~~~~~l~~la 354 (757)
.|.+.++......++.+|.+..... . .+..-.-.+|+.. +.+++.+.++..+++....+... + .++.+++.+.
T Consensus 143 ~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (234)
T PF01637_consen 143 SLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIY 221 (234)
T ss_dssp HHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC------HHHHHHHH
T ss_pred HHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHH
Confidence 6666666644444444333332211 1 1111111346766 99999999999999988665541 1 2455677777
Q ss_pred HhcCCCc
Q 004384 355 KDTHGYV 361 (757)
Q Consensus 355 ~~t~g~~ 361 (757)
..+.|+-
T Consensus 222 ~~~gG~P 228 (234)
T PF01637_consen 222 SLTGGNP 228 (234)
T ss_dssp HHHTT-H
T ss_pred HHhCCCH
Confidence 7777753
No 442
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.20 E-value=4.7e-06 Score=97.62 Aligned_cols=164 Identities=21% Similarity=0.180 Sum_probs=90.3
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhh--------hcccCCCCceeeecCCCCChhHHHHHHHHHhC-------CceEEE
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFE--------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-------ANFISV 496 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~--------~~~~~~~~gilL~GppGtGKT~la~~la~~~~-------~~~i~v 496 (757)
.|.|.+.+|+.+.-.+........... ...++...+|||+|.||||||.+|++++.... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 366888888877544322221100000 01223334699999999999999999998643 233332
Q ss_pred eCccccccccCc-hhHHH--HHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-------
Q 004384 497 KGPELLTMWFGE-SEANV--REIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------- 566 (757)
Q Consensus 497 ~~~~l~~~~~g~-~e~~i--~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~------- 566 (757)
....... +.+. +.... ...+..|. -.+++|||++.+. ......|+..|+.-.
T Consensus 531 gLTa~~~-~~d~~tG~~~le~GaLvlAd---gGtL~IDEidkms--------------~~~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 531 GLTASIK-FNESDNGRAMIQPGAVVLAN---GGVCCIDELDKCH--------------NESRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred cccchhh-hcccccCcccccCCcEEEcC---CCeEEecchhhCC--------------HHHHHHHHHHHhCCEEEEecCC
Confidence 2221110 0000 00000 00111122 2499999999973 334455666664321
Q ss_pred ----CCCeEEEEeeCCCCC-------------CCCccccCCCccceEEE-ecCCCHHHHHHHHHHhh
Q 004384 567 ----AKKTVFIIGATNRPD-------------IIDPALLRPGRLDQLIY-IPLPDEDSRHQIFKACL 615 (757)
Q Consensus 567 ----~~~~v~vi~tTn~~~-------------~ld~allrpgRf~~~i~-~~~p~~~~r~~Il~~~l 615 (757)
-..++-||||+|..+ .|+++++. |||.++. .+.|+.+.=..|-++.+
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 124688999999842 45689998 9997754 46777665444444333
No 443
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.20 E-value=9.1e-06 Score=89.12 Aligned_cols=200 Identities=23% Similarity=0.325 Sum_probs=119.4
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC---CceEEEeCcccccc-
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM- 504 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~~- 504 (757)
.+.+++|.....+++.+.+.... .....||+.|++||||-.+|+++...+. .||+.++|..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA-----------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVA-----------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45567777777777666554211 1224599999999999999999998764 59999999765321
Q ss_pred ----ccCchh----H---HHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-----CC-
Q 004384 505 ----WFGESE----A---NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA- 567 (757)
Q Consensus 505 ----~~g~~e----~---~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~- 567 (757)
.+|... . .-...|+.|... .||+|||..+. ..+...||..|..- -+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mp--------------l~~Q~kLLRvLqe~~~~rvG~~ 270 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMP--------------LELQVKLLRVLQEREFERVGGN 270 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCC--------------HHHHHHHHHHHHcCeeEecCCC
Confidence 122111 1 112356666555 99999998863 45666677666532 11
Q ss_pred ---CCeEEEEeeCCCC--CCCCccccCCC---ccceEEEecCCCHHH----HHHHHHHhhcc----CCC-CCccCHHHHH
Q 004384 568 ---KKTVFIIGATNRP--DIIDPALLRPG---RLDQLIYIPLPDEDS----RHQIFKACLRK----SPV-SKDVDLRALA 630 (757)
Q Consensus 568 ---~~~v~vi~tTn~~--~~ld~allrpg---Rf~~~i~~~~p~~~~----r~~Il~~~l~~----~~~-~~~~d~~~la 630 (757)
.-+|=||+|||+. +.+.....|.. |+. ++.+..|...+ .--++++++++ .+. ...++-+.++
T Consensus 271 ~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 271 KPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1257799999974 22222222211 444 55555554433 34455555544 222 2344555555
Q ss_pred HHc-CCC--CHHHHHHHHHHHHHHHHHHHH
Q 004384 631 KYT-QGF--SGADITEICQRACKYAIRENI 657 (757)
Q Consensus 631 ~~~-~g~--sg~di~~~~~~a~~~a~~~~~ 657 (757)
... ..| +-++++|++..++..+-...+
T Consensus 350 ~L~~y~WPGNVREL~N~ver~~il~~~~~i 379 (464)
T COG2204 350 ALLAYDWPGNVRELENVVERAVILSEGPEI 379 (464)
T ss_pred HHHhCCCChHHHHHHHHHHHHHhcCCcccc
Confidence 433 234 458999999998887765543
No 444
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=4.3e-06 Score=81.17 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=66.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------h---ccc---------------hhHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------K---LAG---------------ESESN 239 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~~-------~---~~g---------------~~~~~ 239 (757)
+.+.++..+.|.||+|+|||||++++++.+... -+.+++..+.. . +.. ....+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 456789999999999999999999999986421 12233321100 0 000 00122
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 240 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 240 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
-+..+..+....|.++++||... .++......+.+++..+.. ...+|.+|++++.+
T Consensus 103 ~rl~la~al~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 158 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATS----------ALDPETEALILEALRALAK--GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCc----------CCCHHHHHHHHHHHHHhcC--CCEEEEEecCHHHH
Confidence 23446667778899999999443 3333344556666655543 25666678876554
No 445
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.19 E-value=2.8e-06 Score=87.59 Aligned_cols=68 Identities=29% Similarity=0.517 Sum_probs=47.9
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccccc-----CchhHHHHHHHHHHHhCCCeEEEEecccc
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWF-----GESEANVREIFDKARQSAPCVLFFDELDS 535 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~-----g~~e~~i~~lf~~a~~~~p~il~iDEid~ 535 (757)
...+++|+||||+|||+||-|++.++ +...+.+..++++...- |..+..+ ...... ..+|+|||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l---~~~l~~--~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKL---LRELKK--VDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHH---HHHhhc--CCEEEEecccC
Confidence 45789999999999999999999876 56778888888765422 1122222 221222 35999999977
Q ss_pred h
Q 004384 536 I 536 (757)
Q Consensus 536 l 536 (757)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 4
No 446
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.19 E-value=2.2e-06 Score=83.43 Aligned_cols=101 Identities=24% Similarity=0.448 Sum_probs=58.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch-hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
..+.+++|+||+|||||+||.+++.++ +..+..++..+++...... ........++... .+.+|+|||+....
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEecccccceee-
Confidence 456789999999999999999998765 6677888888776543321 0111233444433 34699999985321
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 266 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 266 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
........|..+++.-..+.. + |.|||.
T Consensus 122 --------~~~~~~~~l~~ii~~R~~~~~-t-IiTSN~ 149 (178)
T PF01695_consen 122 --------LSEWEAELLFEIIDERYERKP-T-IITSNL 149 (178)
T ss_dssp ----------HHHHHCTHHHHHHHHHT-E-E-EEEESS
T ss_pred --------ecccccccchhhhhHhhcccC-e-EeeCCC
Confidence 112233455666654433322 3 337774
No 447
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.19 E-value=2.6e-06 Score=90.86 Aligned_cols=69 Identities=29% Similarity=0.478 Sum_probs=47.6
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCc---hhHHHHHHHHHHHhCCCeEEEEecccch
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGE---SEANVREIFDKARQSAPCVLFFDELDSI 536 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~---~e~~i~~lf~~a~~~~p~il~iDEid~l 536 (757)
.+++|+||+|+|||+||.++|.++ +..++.+..+++....... ........++.... ..+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCC
Confidence 679999999999999999999986 5677888888776543110 01111122344333 369999999775
No 448
>PRK12377 putative replication protein; Provisional
Probab=98.19 E-value=9.2e-06 Score=83.08 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=46.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH--HHHHHHHHHHHhcCCeEEEEcccccc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE--SNLRKAFEEAEKNAPSIIFIDEIDSI 263 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~--~~l~~vf~~a~~~~p~il~iDEid~l 263 (757)
..+++|+||||||||+|+.+++..+ +..++.++..++......... .....+++.. ....+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCC
Confidence 4689999999999999999999887 455677777776553322110 0112233332 34579999998654
No 449
>PRK06921 hypothetical protein; Provisional
Probab=98.18 E-value=7.3e-06 Score=85.16 Aligned_cols=69 Identities=29% Similarity=0.388 Sum_probs=44.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEccccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDS 262 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~ 262 (757)
...+++|+||+|+|||+|+.++|.++ +..++.+...+++....... ......++.. ....+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 46789999999999999999999876 44566666655544321111 1112222222 3457999999954
No 450
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=1.3e-05 Score=85.82 Aligned_cols=132 Identities=15% Similarity=0.229 Sum_probs=88.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCe-------------------------EEEEechhhh----------------
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAF-------------------------FFCINGPEIM---------------- 229 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~-------------------------~~~v~~~~l~---------------- 229 (757)
-+..+||+||+|+||+++|+.+|..+... ++.+......
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 35579999999999999999999876431 1112111000
Q ss_pred --hh----c-cchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEE
Q 004384 230 --SK----L-AGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 298 (757)
Q Consensus 230 --~~----~-~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI 298 (757)
++ . ..-.-..++.+.+... .....|++||++|.+... ..+.|++.+++- ..++++|
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEEP--p~~t~fi 166 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-----------AANALLKTLEEP--PPGTVFL 166 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-----------HHHHHHHHhcCC--CcCcEEE
Confidence 00 0 0011234555554432 233469999999988532 347788888863 4477888
Q ss_pred EecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHH
Q 004384 299 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIH 338 (757)
Q Consensus 299 ~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 338 (757)
.+|++++.+.|.+++ |. ..+.+++|+.++..+.|...
T Consensus 167 L~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 167 LVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 899999999999998 77 67899999998888887653
No 451
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.18 E-value=9.3e-06 Score=86.61 Aligned_cols=104 Identities=21% Similarity=0.386 Sum_probs=61.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch---hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE---SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~---~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
..+++|+||+|+|||+|+.++|.++ +..++.++..++....... ........++.. ....+|+|||+.....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKI 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCC
Confidence 4789999999999999999999986 5667788877775543211 001111113332 2346999999865532
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC-CCCCC
Q 004384 266 KREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN-RPNSI 307 (757)
Q Consensus 266 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn-~~~~l 307 (757)
+ ......|..+++.......-+|| +|| .+..+
T Consensus 261 t---------~~~~~~Lf~iin~R~~~~k~tIi-TSNl~~~el 293 (329)
T PRK06835 261 T---------EFSKSELFNLINKRLLRQKKMII-STNLSLEEL 293 (329)
T ss_pred C---------HHHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHH
Confidence 1 12235566666654332233444 555 34333
No 452
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.18 E-value=9.7e-06 Score=83.56 Aligned_cols=72 Identities=31% Similarity=0.532 Sum_probs=49.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHH-HHHHHHHHHHhcCCeEEEEcccccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESES-NLRKAFEEAEKNAPSIIFIDEIDSI 263 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~-~l~~vf~~a~~~~p~il~iDEid~l 263 (757)
.+.+++|+||||+|||+|+-+|+.++ |..+..+..++++......... ....-+... -....+|+|||+-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~-l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE-LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH-hhcCCEEEEecccCc
Confidence 57899999999999999999999876 5677888888887654332211 111112221 123469999998654
No 453
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.18 E-value=1.6e-06 Score=67.91 Aligned_cols=36 Identities=31% Similarity=0.555 Sum_probs=33.0
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 004384 683 VSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQ 718 (757)
Q Consensus 683 ~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 718 (757)
.++|+++||+.|+++++||||+++|++|++|.++|+
T Consensus 27 ~p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 27 EPPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 458999999999999999999999999999999985
No 454
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.15 E-value=8.3e-06 Score=94.21 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=84.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechhhhhhccchhHHHHHHHHHH---------HHhcCCeEEEEcccc
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESESNLRKAFEE---------AEKNAPSIIFIDEID 261 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~~l~~~~~g~~~~~l~~vf~~---------a~~~~p~il~iDEid 261 (757)
.+|||.|+||||||+++++++..++. +|+.+..........|.. .+...+.. .......+||+||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 46999999999999999999998764 477776432222233321 01110110 001122599999998
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC---CCCHHhhccCCcceEEEeCC-C
Q 004384 262 SIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGV-P 326 (757)
Q Consensus 262 ~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----------~~~~v~vI~atn~~~---~ld~~l~r~~rf~~~i~i~~-p 326 (757)
.+.+ .+...|+..|+.-. ....+.||+++|..+ .+.+++.. ||...+.+.. |
T Consensus 95 rl~~-----------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~ 161 (589)
T TIGR02031 95 LLDD-----------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVA 161 (589)
T ss_pred hCCH-----------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCC
Confidence 8753 24466777775321 113578888888764 67788877 8888776654 5
Q ss_pred CHHHHHHHHHHHh
Q 004384 327 DEVGRLEVLRIHT 339 (757)
Q Consensus 327 ~~~~r~~il~~~~ 339 (757)
...+|.+|++...
T Consensus 162 ~~~er~eil~~~~ 174 (589)
T TIGR02031 162 SQDLRVEIVRRER 174 (589)
T ss_pred CHHHHHHHHHHHH
Confidence 6677888886543
No 455
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.15 E-value=0.00011 Score=73.74 Aligned_cols=176 Identities=19% Similarity=0.221 Sum_probs=108.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-e-----------
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-F----------- 219 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-~----------- 219 (757)
..+-+++.+.+.++....++.+..- ..-.++++|||+|+||-|.+.++-.++-. -
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~~-------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSST-------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhccc-------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 3444556666666666665554431 11247999999999999999888777521 0
Q ss_pred -----------------EEEEechhhhhhccchh-HHHHHHHHHHHHhcC---------CeEEEEcccccccCCCCCCch
Q 004384 220 -----------------FFCINGPEIMSKLAGES-ESNLRKAFEEAEKNA---------PSIIFIDEIDSIAPKREKTHG 272 (757)
Q Consensus 220 -----------------~~~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~---------p~il~iDEid~l~~~~~~~~~ 272 (757)
.+.++.++. |.. .-.+..++++..+.. ..+++|-|+|.+..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDa-----G~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------- 141 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDA-----GNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------- 141 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhc-----CcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH-------
Confidence 122222221 211 123344444433322 25889999887743
Q ss_pred HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-Cchhhh
Q 004384 273 EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLE 351 (757)
Q Consensus 273 ~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~ 351 (757)
.....|..-|+.+.. .+-+|..+|....+-+.+++ |. ..+.+|.|+.++-..++...+++-.+. +..-+.
T Consensus 142 ----dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~ 212 (351)
T KOG2035|consen 142 ----DAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLK 212 (351)
T ss_pred ----HHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 234566677777766 44555678888888888988 54 447899999999998888766543332 233467
Q ss_pred HHhHhcCCCc
Q 004384 352 RIAKDTHGYV 361 (757)
Q Consensus 352 ~la~~t~g~~ 361 (757)
.+++.+.|-.
T Consensus 213 rIa~kS~~nL 222 (351)
T KOG2035|consen 213 RIAEKSNRNL 222 (351)
T ss_pred HHHHHhcccH
Confidence 7777776643
No 456
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.14 E-value=7.1e-06 Score=79.80 Aligned_cols=108 Identities=22% Similarity=0.340 Sum_probs=65.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------h--hccc---------------hhHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------S--KLAG---------------ESESN 239 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~--------~--~~~g---------------~~~~~ 239 (757)
+.+.+++.+.|.||+|+|||||+++|++..... -+.+++.++. . .+.. ....+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence 456788899999999999999999999976321 1223322110 0 0000 01223
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 240 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 240 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
-+..+..+....|.++++||.-. .++......+.+++..+... +..+|.+|++++
T Consensus 103 qrv~la~al~~~p~~lllDEPt~----------~LD~~~~~~l~~~l~~~~~~-~~tii~~sh~~~ 157 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNS----------HLDVEGERALNQAIAALKAA-GATRIVIAHRPE 157 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCcc----------ccCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 34557777788999999999543 33333445555555554432 345666777654
No 457
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.14 E-value=4.6e-06 Score=94.42 Aligned_cols=150 Identities=27% Similarity=0.374 Sum_probs=90.3
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHH-----------hCCeEEEEe
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANE-----------TGAFFFCIN 224 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~-----------l~~~~~~v~ 224 (757)
.|+++.|.+..++++++.+...- ....+|||+|++||||+++|++|-.. .+.+|+.++
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A-----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYA-----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57789999998888887775311 23467999999999999999999776 356899999
Q ss_pred chhhhhhc-----cchhHH--------HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-
Q 004384 225 GPEIMSKL-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK- 290 (757)
Q Consensus 225 ~~~l~~~~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~- 290 (757)
|..+.... .|.... .-...|+.+. ...||||||+.+... +...|+..++.-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-----------HHHHHHhhhhcCeE
Confidence 97653211 111000 0011333332 358999999987532 3345666654311
Q ss_pred --------CCCeEEEEEecCCC-CC------CCHHhhccCCcceEEEeCCCCHHHHHH
Q 004384 291 --------SRAHVIVIGATNRP-NS------IDPALRRFGRFDREIDIGVPDEVGRLE 333 (757)
Q Consensus 291 --------~~~~v~vI~atn~~-~~------ld~~l~r~~rf~~~i~i~~p~~~~r~~ 333 (757)
....+-+|++|+.. .. +.+.+-. |+ ..+.+..|...+|.+
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL-~~~~I~lPPLReR~e 406 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RL-SILRLQLPPLRERVA 406 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hh-cCCeecCCChhhchh
Confidence 11245788887753 11 1111211 33 235666777777654
No 458
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.14 E-value=8e-06 Score=94.14 Aligned_cols=124 Identities=27% Similarity=0.417 Sum_probs=78.5
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 004384 155 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 231 (757)
Q Consensus 155 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~ 231 (757)
..++++.|-+..++++.+.+...- ....+|+|+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~ 261 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSET 261 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHH
Confidence 467889999998888877765421 235679999999999999999998764 468999999765321
Q ss_pred c-----cchhHH----HH---HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--C------
Q 004384 232 L-----AGESES----NL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--S------ 291 (757)
Q Consensus 232 ~-----~g~~~~----~l---~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--~------ 291 (757)
. .|.... .. ...|.. ....+||||||+.+... ....|+..++.-. .
T Consensus 262 ~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~GtL~ldei~~L~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~ 327 (534)
T TIGR01817 262 LLESELFGHEKGAFTGAIAQRKGRFEL---ADGGTLFLDEIGEISPA-----------FQAKLLRVLQEGEFERVGGNRT 327 (534)
T ss_pred HHHHHHcCCCCCccCCCCcCCCCcccc---cCCCeEEEechhhCCHH-----------HHHHHHHHHhcCcEEECCCCce
Confidence 1 010000 00 001222 23468999999988532 3345666654311 0
Q ss_pred -CCeEEEEEecCC
Q 004384 292 -RAHVIVIGATNR 303 (757)
Q Consensus 292 -~~~v~vI~atn~ 303 (757)
...+.+|++|+.
T Consensus 328 ~~~~~riI~~s~~ 340 (534)
T TIGR01817 328 LKVDVRLVAATNR 340 (534)
T ss_pred EeecEEEEEeCCC
Confidence 124677777764
No 459
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.14 E-value=6e-06 Score=80.14 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=62.9
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-------------EEEEechhhhh----------hccch--hHHHH
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF-------------FFCINGPEIMS----------KLAGE--SESNL 240 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~-------------~~~v~~~~l~~----------~~~g~--~~~~l 240 (757)
++.+.++..+.|.||+|||||||++++....+.. +..+...+... ..... ...+-
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~q 94 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQ 94 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHH
Confidence 3456788999999999999999999996432221 11111000111 00011 12233
Q ss_pred HHHHHHHHhcC--CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 241 RKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 241 ~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
+..+..+.... |.++++||... .++......+.+.+..+... +..||.+||+++
T Consensus 95 rl~laral~~~~~p~llLlDEPt~----------~LD~~~~~~l~~~l~~~~~~-g~tvIivSH~~~ 150 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPST----------GLHQQDINQLLEVIKGLIDL-GNTVILIEHNLD 150 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence 44566677778 99999999543 33334445555555554332 445666787764
No 460
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.14 E-value=1.1e-05 Score=76.42 Aligned_cols=57 Identities=21% Similarity=0.385 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
+..+..|.-+.|.+|+-|| +.+.++......++.++..+... +..|+.+|++.+.++
T Consensus 145 RvaIARAiV~~P~vLlADE----------PTGNLDp~~s~~im~lfeeinr~-GtTVl~ATHd~~lv~ 201 (223)
T COG2884 145 RVAIARAIVNQPAVLLADE----------PTGNLDPDLSWEIMRLFEEINRL-GTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHccCCCeEeecC----------CCCCCChHHHHHHHHHHHHHhhc-CcEEEEEeccHHHHH
Confidence 4456677778899999999 55566666777788888777654 556666777654443
No 461
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.13 E-value=8.7e-05 Score=83.86 Aligned_cols=65 Identities=26% Similarity=0.403 Sum_probs=50.4
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
+..+.+.+|+.-..+.++.++..+.-.+. +-.+.+-+||+|||||||||+++.||.+++..+...
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~~--------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew 76 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMFS--------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEW 76 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHhc--------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEe
Confidence 45667788899888888888888764221 223345689999999999999999999999877654
No 462
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.13 E-value=8.7e-06 Score=79.59 Aligned_cols=110 Identities=20% Similarity=0.243 Sum_probs=66.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh------h---c----------------cc--hh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS------K---L----------------AG--ES 236 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~~------~---~----------------~g--~~ 236 (757)
++.+.+++.+.|.||+|+|||||++++++..... -+.+++.++.. . + .. ..
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~ 101 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG 101 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence 3456789999999999999999999999976421 12333321100 0 0 00 01
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 237 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 237 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
..+-+..+..+....|.++++||...-+ +......+.+.+..+.. +..+|.+|+.++.+
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~~~--~~tii~~sh~~~~~ 160 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEVLK--DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHHcC--CCEEEEEecCHHHH
Confidence 1233445677777889999999954332 23333455555555432 34556677776544
No 463
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.13 E-value=8.1e-06 Score=80.85 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+|.+++++++.|+||+|+|||||++.++++.
T Consensus 51 sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 51 SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred ceeecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 3457899999999999999999999998875
No 464
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.13 E-value=5.5e-06 Score=83.76 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=73.5
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh-------------------------hhccchh--
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM-------------------------SKLAGES-- 236 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~-------------------------~~~~g~~-- 236 (757)
++.+..++.+.|+|++||||||++|.+.+..... -+..++.++. ..|..+.
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 3456789999999999999999999999876422 1333332221 1111111
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 237 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 237 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
.++-+-.+..|..-.|.+++.||.-+.+ +-.+..++++++..++...++..+-.+++..
T Consensus 113 GQrQRi~IARALal~P~liV~DEpvSaL----------DvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~ 171 (268)
T COG4608 113 GQRQRIGIARALALNPKLIVADEPVSAL----------DVSVQAQILNLLKDLQEELGLTYLFISHDLS 171 (268)
T ss_pred hhhhhHHHHHHHhhCCcEEEecCchhhc----------chhHHHHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence 1223445777888899999999965443 3445677888887777766777777777653
No 465
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=6e-05 Score=80.08 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=86.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 247 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 247 (757)
+..+||+||+|+||+++|+.+|..+-.. ++.+...+ ++. -.-..++.+.+.+
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~~ 99 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEKV 99 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHHH
Confidence 3469999999999999999999876321 12221100 010 1234455554443
Q ss_pred H----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 004384 248 E----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 323 (757)
Q Consensus 248 ~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i 323 (757)
. .....|++||++|.+-. ...+.|++.+++- ..++++|.+|+.++.+-|.+++ |. ..+.+
T Consensus 100 ~~~~~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEP--p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~ 163 (325)
T PRK06871 100 SQHAQQGGNKVVYIQGAERLTE-----------AAANALLKTLEEP--RPNTYFLLQADLSAALLPTIYS--RC-QTWLI 163 (325)
T ss_pred hhccccCCceEEEEechhhhCH-----------HHHHHHHHHhcCC--CCCeEEEEEECChHhCchHHHh--hc-eEEeC
Confidence 2 23446999999998753 2347788888874 3467777788889999999988 66 56889
Q ss_pred CCCCHHHHHHHHHHH
Q 004384 324 GVPDEVGRLEVLRIH 338 (757)
Q Consensus 324 ~~p~~~~r~~il~~~ 338 (757)
++|+.++-.+.|...
T Consensus 164 ~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 164 HPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999888877777643
No 466
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.12 E-value=1.4e-05 Score=86.47 Aligned_cols=195 Identities=22% Similarity=0.327 Sum_probs=113.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~ 503 (757)
......|+|......++.+.|.... .....|||.|.+||||-.+|+++...+ ..||+.+||+.+-.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA-----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVA-----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHh-----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 4566788888888777776665321 123459999999999999999999876 46999999976532
Q ss_pred c-----ccC----chhH---HHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC-----CC
Q 004384 504 M-----WFG----ESEA---NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG-----MS 566 (757)
Q Consensus 504 ~-----~~g----~~e~---~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~-----~~ 566 (757)
. .+| ..-. .-+.-|+.|... -+|+|||..+. ..+...||..|.. +-
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGG---TLFLDEIGelP--------------L~lQaKLLRvLQegEieRvG 350 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGG---TLFLDEIGELP--------------LALQAKLLRVLQEGEIERVG 350 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCC---eEechhhccCC--------------HHHHHHHHHHHhhcceeecC
Confidence 1 111 1111 112345555544 89999997753 4455666655543 22
Q ss_pred CCC----eEEEEeeCCCCCCCCccccCCCccce-------EEEecCCCHHHH----HH----HHHHhhccCCC-CCccCH
Q 004384 567 AKK----TVFIIGATNRPDIIDPALLRPGRLDQ-------LIYIPLPDEDSR----HQ----IFKACLRKSPV-SKDVDL 626 (757)
Q Consensus 567 ~~~----~v~vi~tTn~~~~ld~allrpgRf~~-------~i~~~~p~~~~r----~~----Il~~~l~~~~~-~~~~d~ 626 (757)
+.+ .|=||+|||+- |..+... |+|-. ++.+..|-..+| -- +++.+-++.+. ....+-
T Consensus 351 ~~r~ikVDVRiIAATNRD--L~~~V~~-G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~ 427 (550)
T COG3604 351 GDRTIKVDVRVIAATNRD--LEEMVRD-GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSA 427 (550)
T ss_pred CCceeEEEEEEEeccchh--HHHHHHc-CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCH
Confidence 222 57899999973 2222222 34331 222333322222 22 22333333443 222333
Q ss_pred HHHHHHc-CCC--CHHHHHHHHHHHHHHH
Q 004384 627 RALAKYT-QGF--SGADITEICQRACKYA 652 (757)
Q Consensus 627 ~~la~~~-~g~--sg~di~~~~~~a~~~a 652 (757)
+.+.... -.| +-+++++++..|+..|
T Consensus 428 ~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 428 EALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 3332221 224 5699999999999988
No 467
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.12 E-value=2.6e-06 Score=79.57 Aligned_cols=58 Identities=31% Similarity=0.556 Sum_probs=41.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCC---ceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQA---NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~---~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
..++|+|++||||+++|+++....+. +|+.+++..+. ..+++.+ ....+||+|+|.+.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC
Confidence 45999999999999999999987653 55555544321 4466665 44599999999984
No 468
>PRK06921 hypothetical protein; Provisional
Probab=98.11 E-value=4.2e-06 Score=86.92 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=43.8
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh----CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDS 535 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~ 535 (757)
..+++|+||||+|||+|+.++|.++ +...+.+...+++..... ........++... ...+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~--~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD-DFDLLEAKLNRMK--KVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH-HHHHHHHHHHHhc--CCCEEEEecccc
Confidence 4679999999999999999999875 455666666555432211 0111122223322 346999999954
No 469
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.11 E-value=4.4e-06 Score=79.88 Aligned_cols=111 Identities=28% Similarity=0.347 Sum_probs=65.3
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhh-------hccc-----hhHHHHHHHHHHHHhcC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMS-------KLAG-----ESESNLRKAFEEAEKNA 251 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~~-------~~~g-----~~~~~l~~vf~~a~~~~ 251 (757)
++.+.++..++|.||+|+|||||++++++.+... -+.+++..+.. ...+ .....-+..+..+....
T Consensus 19 ~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 19 SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN 98 (157)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC
Confidence 3456788899999999999999999999987532 23444432210 0000 11223334466666677
Q ss_pred CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 252 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 252 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
|.++++||...-+ +......+...+..+... +..++.+++.++.+
T Consensus 99 ~~i~ilDEp~~~l----------D~~~~~~l~~~l~~~~~~-~~tii~~sh~~~~~ 143 (157)
T cd00267 99 PDLLLLDEPTSGL----------DPASRERLLELLRELAEE-GRTVIIVTHDPELA 143 (157)
T ss_pred CCEEEEeCCCcCC----------CHHHHHHHHHHHHHHHHC-CCEEEEEeCCHHHH
Confidence 8999999965433 222233444444443333 23556677776544
No 470
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.10 E-value=5.2e-05 Score=81.00 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.+++-+.|.||+|.||||.++.||+++.
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~ 125 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELK 125 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccc
Confidence 4566799999999999999999999873
No 471
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.09 E-value=2.8e-05 Score=85.39 Aligned_cols=152 Identities=25% Similarity=0.412 Sum_probs=94.4
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh-
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK- 231 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~- 231 (757)
...++.|-...++++++.+..- ....-.|||+|++||||-++||+|-... +.+|+.+||..+...
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv-----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV-----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH-----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4667999999999998887641 1234579999999999999999997654 568999999654322
Q ss_pred ----ccc----hhHHHH---HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc-----cc----C
Q 004384 232 ----LAG----ESESNL---RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-----LK----S 291 (757)
Q Consensus 232 ----~~g----~~~~~l---~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~-----~~----~ 291 (757)
..| ...... .-.|+.|.. ..||+|||..+... +...|+..+.. +. -
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-----------~Q~kLLRvLqe~~~~rvG~~~~i 273 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-----------LQVKLLRVLQEREFERVGGNKPI 273 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-----------HHHHHHHHHHcCeeEecCCCccc
Confidence 111 111111 113444443 48999999877432 23344444432 11 1
Q ss_pred CCeEEEEEecCCCCCCCHHhhc-------cCCcceEEEeCCCCHHHHHHHH
Q 004384 292 RAHVIVIGATNRPNSIDPALRR-------FGRFDREIDIGVPDEVGRLEVL 335 (757)
Q Consensus 292 ~~~v~vI~atn~~~~ld~~l~r-------~~rf~~~i~i~~p~~~~r~~il 335 (757)
+..|-||++||.. +...... ..|+ ..+.+..|...+|.+-+
T Consensus 274 ~vdvRiIaaT~~d--L~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDI 321 (464)
T COG2204 274 KVDVRIIAATNRD--LEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDI 321 (464)
T ss_pred ceeeEEEeecCcC--HHHHHHcCCcHHHHHhhh-ccceecCCcccccchhH
Confidence 2368899999864 2222211 1144 45677788877776533
No 472
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.09 E-value=6.5e-06 Score=80.09 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=65.3
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh-----------------hhccc---------hhH
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM-----------------SKLAG---------ESE 237 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~-----------------~~~~g---------~~~ 237 (757)
++.+.+++.+.|+||+|+|||||++.+++.+... -+.+++..+. ..+.+ ...
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3456788899999999999999999999975321 1222221110 00000 011
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 238 SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 238 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
++-+..+..+....|.++++||...- ++......+.+++..+..+ +..+|.+|++++.
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~~-g~tiii~th~~~~ 157 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSG----------LDPESRREFWELLRELKKE-GKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHH
Confidence 22344577777889999999995433 2333345555555555433 3456667776543
No 473
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.08 E-value=3.6e-05 Score=90.75 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=88.4
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh-
Q 004384 155 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS- 230 (757)
Q Consensus 155 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~- 230 (757)
.+|+++.|-+..++++.+.+..-. ....+|+|+|++||||+++|++|-... +.+|+.++|..+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a-----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAA-----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHh-----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 467888888888777766554311 234569999999999999999998764 36899999976532
Q ss_pred ----hccchh----HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----C----CC
Q 004384 231 ----KLAGES----ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RA 293 (757)
Q Consensus 231 ----~~~g~~----~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----~----~~ 293 (757)
...|.. .......|+. .....||||||+.+... +...|+..++.-. . ..
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSPE-----------LQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceEEe
Confidence 111211 0000001222 23468999999987532 2344555554211 0 12
Q ss_pred eEEEEEecCCCC-------CCCHHhhccCCcceEEEeCCCCHHHHHH
Q 004384 294 HVIVIGATNRPN-------SIDPALRRFGRFDREIDIGVPDEVGRLE 333 (757)
Q Consensus 294 ~v~vI~atn~~~-------~ld~~l~r~~rf~~~i~i~~p~~~~r~~ 333 (757)
.+.+|++|+..- .+.+.|-. |+ ..+.+..|...+|.+
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~--~l-~~~~i~lPpLreR~~ 500 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYY--AL-HAFEITIPPLRMRRE 500 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhh--hh-ceeEEeCCChhhhhh
Confidence 567888887531 11222211 23 245666777777753
No 474
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.08 E-value=9.6e-05 Score=80.75 Aligned_cols=171 Identities=16% Similarity=0.201 Sum_probs=94.3
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc-------cc-------cccCchhHHHHHHHHHH------------
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL-------LT-------MWFGESEANVREIFDKA------------ 520 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l-------~~-------~~~g~~e~~i~~lf~~a------------ 520 (757)
-+||.||+||||||.++.|+++++..++....+-. -+ .|..+-.. .......+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~-fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAV-FESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHH-HHHHHHHHHhhchhhhcccc
Confidence 38899999999999999999999988877653211 11 11111110 00011112
Q ss_pred HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCC------Cccc
Q 004384 521 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRP------GRLD 594 (757)
Q Consensus 521 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrp------gRf~ 594 (757)
....+.+|++||+=..+... ..+.+...|.++-......-|++|.-++.++..++..++| -|++
T Consensus 191 ~~~~~~liLveDLPn~~~~d----------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~ 260 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD----------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRIS 260 (634)
T ss_pred cccCceEEEeeccchhhhhh----------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcc
Confidence 11235699999986655320 2333444444443322222233333333444444433321 1565
Q ss_pred eEEEecCCCHHHHHHHHHHhhccCCCC-------CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 595 QLIYIPLPDEDSRHQIFKACLRKSPVS-------KDVDLRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 595 ~~i~~~~p~~~~r~~Il~~~l~~~~~~-------~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
.|.|.|-...-.++.|+..++..... ....++.++.. +|+||+.++....+.++
T Consensus 261 -~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~----s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 261 -NISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQG----SGGDIRSAINSLQLSSS 321 (634)
T ss_pred -eEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHh----cCccHHHHHhHhhhhcc
Confidence 78888888877777777777554222 12223344433 45699998888777753
No 475
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.08 E-value=6e-06 Score=81.34 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.+++-+.+.||+|||||||+|.+.+.+
T Consensus 29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll 58 (263)
T COG1127 29 LDVPRGEILAILGGSGSGKSTLLRLILGLL 58 (263)
T ss_pred eeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence 345778889999999999999999998876
No 476
>PF05729 NACHT: NACHT domain
Probab=98.07 E-value=3.3e-05 Score=74.13 Aligned_cols=140 Identities=21% Similarity=0.293 Sum_probs=73.7
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC---------eEEEEechhhhhhc------------cchhHHHHHHHH-HHHHhcC
Q 004384 194 GILLYGPPGSGKTLIARAVANETGA---------FFFCINGPEIMSKL------------AGESESNLRKAF-EEAEKNA 251 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~---------~~~~v~~~~l~~~~------------~g~~~~~l~~vf-~~a~~~~ 251 (757)
-++|+|+||+|||++++.++..+.. .++...+.+..... .......+...+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999876521 12333333221110 001111111111 2223455
Q ss_pred CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc-ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHH
Q 004384 252 PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 330 (757)
Q Consensus 252 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~-~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~ 330 (757)
..+++||.+|.+...... .........+..++.. ... ++-++.++.. ..... +.+...-...+.+...+.++
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~~~~~--~~~liit~r~-~~~~~-~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQALPP--GVKLIITSRP-RAFPD-LRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhhccCC--CCeEEEEEcC-ChHHH-HHHhcCCCcEEEECCCCHHH
Confidence 678999999999764322 1122333444455544 222 2333333332 22211 33211222568888889999
Q ss_pred HHHHHHHHhc
Q 004384 331 RLEVLRIHTK 340 (757)
Q Consensus 331 r~~il~~~~~ 340 (757)
..++++.+++
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9888877654
No 477
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.07 E-value=1.2e-05 Score=76.82 Aligned_cols=72 Identities=31% Similarity=0.451 Sum_probs=46.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhc----------------------c--chhHHHHHHHHHHH
Q 004384 195 ILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL----------------------A--GESESNLRKAFEEA 247 (757)
Q Consensus 195 vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~----------------------~--g~~~~~l~~vf~~a 247 (757)
++|+||||+|||+++..++... +..++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 3455555443221100 0 00111122334556
Q ss_pred HhcCCeEEEEcccccccCC
Q 004384 248 EKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 248 ~~~~p~il~iDEid~l~~~ 266 (757)
....+.++++||+..+.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678899999999988654
No 478
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.07 E-value=8.6e-06 Score=83.07 Aligned_cols=70 Identities=27% Similarity=0.457 Sum_probs=49.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchh---HHHHHHHHHHHHhcCCeEEEEccccccc
Q 004384 193 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGES---ESNLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~---~~~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
.+++|+|+||||||+|+.+++..+ +..++.++..++........ ......+++... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 489999999999999999999987 56677777777765433211 111223444432 46799999997653
No 479
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.07 E-value=2.6e-05 Score=74.47 Aligned_cols=110 Identities=22% Similarity=0.260 Sum_probs=61.6
Q ss_pred eeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc----------------------cccCc--hhHHHHHHHHHH
Q 004384 468 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT----------------------MWFGE--SEANVREIFDKA 520 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~----------------------~~~g~--~e~~i~~lf~~a 520 (757)
++++||||+|||++++.++... +.+.+.++...... .+... ...........+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 34555554432221 00011 111122345566
Q ss_pred HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC
Q 004384 521 RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD 581 (757)
Q Consensus 521 ~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~ 581 (757)
....|.++++||+..+................+.+..++..+. ..++.+|++++.+.
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 7778899999999998754211000111223344444444443 23555666665544
No 480
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.07 E-value=6.1e-05 Score=86.18 Aligned_cols=152 Identities=23% Similarity=0.366 Sum_probs=90.0
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhh
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM 229 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~ 229 (757)
...+|+++.|-+..++++.+.+..-- ....+|+|+|++||||+++|+++-... ..+|+.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A-----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLA-----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 45688899999988777766554211 124569999999999999999986543 3679999997653
Q ss_pred hhc-----cchhH-------HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc--c-----
Q 004384 230 SKL-----AGESE-------SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL--K----- 290 (757)
Q Consensus 230 ~~~-----~g~~~-------~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~--~----- 290 (757)
... .|... ..-...|+.+ ....||||||+.+.+. +...|+..+..- .
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~ 333 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSPR-----------MQAKLLRFLNDGTFRRVGED 333 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCHH-----------HHHHHHHHHhcCCcccCCCC
Confidence 211 11100 0001123333 2458999999988532 234455555431 1
Q ss_pred --CCCeEEEEEecCCC-C------CCCHHhhccCCcceEEEeCCCCHHHHH
Q 004384 291 --SRAHVIVIGATNRP-N------SIDPALRRFGRFDREIDIGVPDEVGRL 332 (757)
Q Consensus 291 --~~~~v~vI~atn~~-~------~ld~~l~r~~rf~~~i~i~~p~~~~r~ 332 (757)
....+-+|++|+.. . .+.+.|.. |+.. +.+..|...+|.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~-~~i~lPpLreR~ 381 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNV-LTLNLPPLRDRP 381 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCe-eEEeCCCcccCh
Confidence 11356677777653 1 23344443 5432 556666666665
No 481
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=1.9e-05 Score=84.31 Aligned_cols=130 Identities=20% Similarity=0.293 Sum_probs=84.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC-------------------------eEEEEechhh---hhhc-cchhHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGA-------------------------FFFCINGPEI---MSKL-AGESESNLRK 242 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~-------------------------~~~~v~~~~l---~~~~-~g~~~~~l~~ 242 (757)
+..+||+||+|+|||++|+.+|+.+.. .++.+....- .++. ..-.-..++.
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~ 100 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVRE 100 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHH
Confidence 456999999999999999999987632 1233322100 0000 0012345666
Q ss_pred HHHHHHh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcc
Q 004384 243 AFEEAEK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFD 318 (757)
Q Consensus 243 vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~ 318 (757)
+.+.+.. ....|+++|+++.+-+ ...+.++..++.... .+.+|.+|+.++.+.+.+++ |.
T Consensus 101 l~~~~~~~p~~~~~kV~iiEp~~~Ld~-----------~a~naLLk~LEep~~--~~~~Ilvth~~~~ll~ti~S--Rc- 164 (325)
T PRK08699 101 IIDNVYLTSVRGGLRVILIHPAESMNL-----------QAANSLLKVLEEPPP--QVVFLLVSHAADKVLPTIKS--RC- 164 (325)
T ss_pred HHHHHhhCcccCCceEEEEechhhCCH-----------HHHHHHHHHHHhCcC--CCEEEEEeCChHhChHHHHH--Hh-
Confidence 6555543 3345888888877632 334667778877643 45566689999999999887 55
Q ss_pred eEEEeCCCCHHHHHHHHHH
Q 004384 319 REIDIGVPDEVGRLEVLRI 337 (757)
Q Consensus 319 ~~i~i~~p~~~~r~~il~~ 337 (757)
..+.++.|+.++-.+.|..
T Consensus 165 ~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 165 RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhhcCCCCCHHHHHHHHHh
Confidence 5678888988887776653
No 482
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.06 E-value=1.1e-05 Score=85.28 Aligned_cols=70 Identities=26% Similarity=0.502 Sum_probs=47.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEccccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDS 262 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~ 262 (757)
.+.+++|+||+|||||+|+.++|.++ +..+..+..++++........ ..+...++.. ....+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCC
Confidence 46789999999999999999999987 566677777766544322111 1123333333 2456999999864
No 483
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.06 E-value=2.1e-05 Score=79.01 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=64.4
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh----h----cc---------------chhHHHHH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----K----LA---------------GESESNLR 241 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~----~----~~---------------g~~~~~l~ 241 (757)
|++++.-++|+||||||||+++..++... +...++++..++.. . .. .+....+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 77888999999999999999999887543 45566666643100 0 00 01111233
Q ss_pred HHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004384 242 KAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 302 (757)
Q Consensus 242 ~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn 302 (757)
.+........+++++||-+..+.............+....++..+..+....++.++.+.+
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3444455557899999999988643211111111112222233343343445666665544
No 484
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.06 E-value=6.6e-06 Score=85.70 Aligned_cols=140 Identities=21% Similarity=0.298 Sum_probs=75.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCe---EEEEechhhhhhccchhHHHHHHHHHHH-----------HhcCCeEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAF---FFCINGPEIMSKLAGESESNLRKAFEEA-----------EKNAPSII 255 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~---~~~v~~~~l~~~~~g~~~~~l~~vf~~a-----------~~~~p~il 255 (757)
..+.++||+||+|||||++++.+-..+... ...++.+.. .....+..+++.. ......++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~ 104 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL 104 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence 346789999999999999998877665432 223443221 1112222222211 11234699
Q ss_pred EEcccccccCCCCCCchHHHHHHHHHHHHHhhcc-------cCCCeEEEEEecCCCC---CCCHHhhccCCcceEEEeCC
Q 004384 256 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL-------KSRAHVIVIGATNRPN---SIDPALRRFGRFDREIDIGV 325 (757)
Q Consensus 256 ~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~-------~~~~~v~vI~atn~~~---~ld~~l~r~~rf~~~i~i~~ 325 (757)
|+||+....++.... ...-.+++|+++.-.-+ ..-.++.+++++++.. .+++.+. |....+.++.
T Consensus 105 fiDDlN~p~~d~ygt--q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~---r~f~i~~~~~ 179 (272)
T PF12775_consen 105 FIDDLNMPQPDKYGT--QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFL---RHFNILNIPY 179 (272)
T ss_dssp EEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHH---TTEEEEE---
T ss_pred EecccCCCCCCCCCC--cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHh---hheEEEEecC
Confidence 999998766554322 22234555555432111 1113577888888643 3455555 4447899999
Q ss_pred CCHHHHHHHHHHHhc
Q 004384 326 PDEVGRLEVLRIHTK 340 (757)
Q Consensus 326 p~~~~r~~il~~~~~ 340 (757)
|+.+....|+...+.
T Consensus 180 p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 180 PSDESLNTIFSSILQ 194 (272)
T ss_dssp -TCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHh
Confidence 999988888776543
No 485
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=6.6e-06 Score=88.92 Aligned_cols=49 Identities=27% Similarity=0.468 Sum_probs=39.9
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
...|.||.|++..+..+.-... -+.++|++||||||||+|++.+.+.++
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA---------------GgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA---------------GGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh---------------cCCcEEEecCCCCchHHhhhhhcccCC
Confidence 3468899999998887764433 256799999999999999999988765
No 486
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.05 E-value=2.9e-05 Score=80.60 Aligned_cols=120 Identities=17% Similarity=0.198 Sum_probs=79.1
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCCce--------EEEeCccccccc-cCc----hhHHHHHHHHHHH----hCCCe
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQANF--------ISVKGPELLTMW-FGE----SEANVREIFDKAR----QSAPC 526 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~~~--------i~v~~~~l~~~~-~g~----~e~~i~~lf~~a~----~~~p~ 526 (757)
.+...||+||.|+||+++|.++|..+-+.- -.-.-+|+.--+ .|. +-..+|.+-+.+. .....
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 345699999999999999999998753210 000112221000 011 1334555554443 34457
Q ss_pred EEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCC
Q 004384 527 VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 602 (757)
Q Consensus 527 il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p 602 (757)
|++||++|.+- ....|.||+.|+. +..++++|..|+.++.+-|.+++ |+. .+.|+++
T Consensus 98 v~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 98 IYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred EEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 99999999973 4567999999997 44577888888888988888876 776 6677765
No 487
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.05 E-value=1.2e-05 Score=90.84 Aligned_cols=170 Identities=23% Similarity=0.263 Sum_probs=96.0
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccc-----cCchh-------HHHHHHHHHHHhCCCeEEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESE-------ANVREIFDKARQSAPCVLFF 530 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~~e-------~~i~~lf~~a~~~~p~il~i 530 (757)
..+++.|++||||+++|+++.... ..+|+.+++..+.... +|... ......|..| ....|||
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l 239 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFL 239 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEE
Confidence 458999999999999999998775 3689999988763221 11000 0001112222 2358999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----C----CCeEEEEeeCCCC-------CCCCccccCCCccc
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRLD 594 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~tTn~~-------~~ld~allrpgRf~ 594 (757)
|||+.+. ..+...|+..++.-. . ..++-+|+||+.. ..+.+.|.. |+.
T Consensus 240 ~~i~~l~--------------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 303 (445)
T TIGR02915 240 DEIGDLP--------------LNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFY--RIA 303 (445)
T ss_pred echhhCC--------------HHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHH--Hhc
Confidence 9999974 344555665554321 0 1256788888764 233344433 443
Q ss_pred -eEEEecCCCH--HHHHHHHHHhhccC----CCC-CccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 595 -QLIYIPLPDE--DSRHQIFKACLRKS----PVS-KDVD---LRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 595 -~~i~~~~p~~--~~r~~Il~~~l~~~----~~~-~~~d---~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
..|++|+.-. ++...+++.++++. +.. ..++ +..|..+.---+-+++++++..|+..+-.
T Consensus 304 ~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~~ 374 (445)
T TIGR02915 304 EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAEG 374 (445)
T ss_pred cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 4455555422 23334555555432 211 1233 33444433223668999999988875543
No 488
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.05 E-value=2.5e-05 Score=89.49 Aligned_cols=122 Identities=14% Similarity=0.087 Sum_probs=82.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCccccccccCch--hHHH--------HHHHHHHHhCCCeEEEEecc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGES--EANV--------REIFDKARQSAPCVLFFDEL 533 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~~--e~~i--------~~lf~~a~~~~p~il~iDEi 533 (757)
.|++|.|+.|++||+++++++..+.. +|..+-.+--....+|.. +..+ .-++..|.. .|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 57999999999999999999998754 776554332222233321 1111 112222322 49999999
Q ss_pred cchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeEEEEeeCCCC---CCCCccccCCCccceEEEe
Q 004384 534 DSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYI 599 (757)
Q Consensus 534 d~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~tTn~~---~~ld~allrpgRf~~~i~~ 599 (757)
..+ ...+++.|++-|+.-. ...++++|+|-|.. ..|.++++. ||+..|.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 775 4678999999987531 12467888875432 357889998 99999999
Q ss_pred cCCCHHH
Q 004384 600 PLPDEDS 606 (757)
Q Consensus 600 ~~p~~~~ 606 (757)
+.|+..+
T Consensus 167 ~~~~~~~ 173 (584)
T PRK13406 167 DGLALRD 173 (584)
T ss_pred CCCChHH
Confidence 9887654
No 489
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.04 E-value=1e-05 Score=86.10 Aligned_cols=81 Identities=15% Similarity=0.243 Sum_probs=58.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCC-------eEEEEec----h
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGV-KPPKGILLYGPPGSGKTLIARAVANETGA-------FFFCING----P 226 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLar~la~~l~~-------~~~~v~~----~ 226 (757)
++.|+++.++++.+.+.... .|. ...+.++|+||||||||||+++|++.++. +++.+.+ +
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~s 123 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEES 123 (361)
T ss_pred hccCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCC
Confidence 79999999888877664321 122 23466899999999999999999999876 7788877 5
Q ss_pred hhhhhccchhHHHHHHHHHHH
Q 004384 227 EIMSKLAGESESNLRKAFEEA 247 (757)
Q Consensus 227 ~l~~~~~g~~~~~l~~vf~~a 247 (757)
.+.....+-....++..|.+.
T Consensus 124 p~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 124 PMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCccCCcccCCHHHHHHHHHH
Confidence 555555555566666666443
No 490
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=8.3e-06 Score=79.74 Aligned_cols=111 Identities=20% Similarity=0.338 Sum_probs=65.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhh--------------------hhccc----------
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIM--------------------SKLAG---------- 234 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~--------------------~~~~g---------- 234 (757)
+.+.++..+.|.||+|+|||||++++++.+... -+.+++.++. ..+.+
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~ 100 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence 456788999999999999999999999875421 1222221100 00000
Q ss_pred -hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 235 -ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 235 -~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
....+-+..+..+....|.++++||... .++......+.+++..+....+..++.+|++++.+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~----------~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTS----------ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 0112334456777778899999999543 33333445555666555443234566677765443
No 491
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.03 E-value=1.7e-05 Score=76.49 Aligned_cols=106 Identities=26% Similarity=0.398 Sum_probs=62.4
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEec----------hhhh-----hh----ccc--hhHHHHHH
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCING----------PEIM-----SK----LAG--ESESNLRK 242 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~----------~~l~-----~~----~~g--~~~~~l~~ 242 (757)
++.+.+++.+.|.||+|+|||||++++++.+... -+.+++ ..+. .. ... ....+-+.
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv 100 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRL 100 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHH
Confidence 3456789999999999999999999999976321 011111 0010 00 001 11223344
Q ss_pred HHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 243 AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 243 vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
.+..+....|.++++||...-+ +......+.+.+..+ ...+|.+||+++
T Consensus 101 ~laral~~~p~~lllDEPt~~L----------D~~~~~~l~~~l~~~----~~tiiivsh~~~ 149 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSAL----------DEESEDRLYQLLKEL----GITVISVGHRPS 149 (166)
T ss_pred HHHHHHHcCCCEEEEECCcccc----------CHHHHHHHHHHHHHh----CCEEEEEeCChh
Confidence 5677777899999999954332 233334445555443 135666777754
No 492
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.02 E-value=9.7e-06 Score=85.60 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=39.7
Q ss_pred HHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCH
Q 004384 243 AFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 243 vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~ 309 (757)
.+..+....|.++|+|| +...++......+.+++..+....+..|+.+||.++.+..
T Consensus 146 ~ia~aL~~~P~lliLDE----------Pt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 146 SIALALLHDPELLILDE----------PTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHhcCCCEEEECC----------CCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 35556667899999999 4444445555667777777766666778889998765543
No 493
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.02 E-value=1.2e-05 Score=76.40 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++++.++..|.+.||+|||||||++.+|+..
T Consensus 25 sL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 25 SLTIASGELVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred ceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence 4567889999999999999999999999865
No 494
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=7.3e-05 Score=80.22 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=85.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC------------------------eEEEEechhhhhhccchhHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGA------------------------FFFCINGPEIMSKLAGESESNLRKAFEEA 247 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~------------------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a 247 (757)
+..+||+||+|+||+++|+++|..+-. .++.+.... .+. .-.-..++.+.+.+
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~ 100 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GKS--SLGVDAVREVTEKL 100 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-ccc--cCCHHHHHHHHHHH
Confidence 346999999999999999999987632 122221110 000 01233455554433
Q ss_pred ----HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 004384 248 ----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 323 (757)
Q Consensus 248 ----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i 323 (757)
......|++||++|.+-.. ..+.|++.+++- ..++++|.+|+.++.+-|.+++ |.. .+.+
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEEP--p~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~ 164 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTDA-----------AANALLKTLEEP--PENTWFFLACREPARLLATLRS--RCR-LHYL 164 (334)
T ss_pred hhccccCCceEEEEcchHhhCHH-----------HHHHHHHHhcCC--CCCeEEEEEECChhhChHHHHh--ccc-cccC
Confidence 3344569999999987532 347788888874 3477888888999999999998 663 5788
Q ss_pred CCCCHHHHHHHHHH
Q 004384 324 GVPDEVGRLEVLRI 337 (757)
Q Consensus 324 ~~p~~~~r~~il~~ 337 (757)
+.|+.++-.+.|..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (334)
T PRK07993 165 APPPEQYALTWLSR 178 (334)
T ss_pred CCCCHHHHHHHHHH
Confidence 89988877766653
No 495
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.01 E-value=0.00011 Score=73.65 Aligned_cols=150 Identities=19% Similarity=0.319 Sum_probs=94.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHh-CCc--eEEEeCcc-------------ccccc--------cCchh-HHHHHHHHHH
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC-QAN--FISVKGPE-------------LLTMW--------FGESE-ANVREIFDKA 520 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~-~~~--~i~v~~~~-------------l~~~~--------~g~~e-~~i~~lf~~a 520 (757)
.++++|||+|+||-|.+.++-+++ |.. -+.+.... +.+.| .|... --+.++.+..
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 469999999999999999888775 211 11111100 11111 23222 2344454443
Q ss_pred HhC---------CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCC
Q 004384 521 RQS---------APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPG 591 (757)
Q Consensus 521 ~~~---------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpg 591 (757)
.+. ...+++|-|+|.|.. .....|-..|+...+ +.-+|..+|....+=+++.+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~--------------dAQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS-- 176 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTR--------------DAQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS-- 176 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhH--------------HHHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--
Confidence 332 347999999999843 334445555665443 44566667887777777776
Q ss_pred ccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHHcC
Q 004384 592 RLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKYTQ 634 (757)
Q Consensus 592 Rf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~~~ 634 (757)
|.- .|.+|-|+.++...++...+++.++....+ +..+|+.++
T Consensus 177 RCl-~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 177 RCL-FIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN 219 (351)
T ss_pred hee-EEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc
Confidence 653 789999999999999999998877665433 445555544
No 496
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.00 E-value=2e-05 Score=88.26 Aligned_cols=125 Identities=22% Similarity=0.376 Sum_probs=73.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE--EEEechhhhh--------------------------hccchhHHHH
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETGAFF--FCINGPEIMS--------------------------KLAGESESNL 240 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~--~~v~~~~l~~--------------------------~~~g~~~~~l 240 (757)
+..+.+++|+||||||||||++.+++.+...- ..+.+..+.+ ...|.....-
T Consensus 207 a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~ 286 (506)
T PRK09862 207 AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPG 286 (506)
T ss_pred ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceeh
Confidence 35577899999999999999999998764220 1111111100 0001000000
Q ss_pred HHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCC----
Q 004384 241 RKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPN---- 305 (757)
Q Consensus 241 ~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----------~~~~v~vI~atn~~~---- 305 (757)
...+..|. ..+||+||++.+- ..+...|+..|+.-. ...++.+|+++|+..
T Consensus 287 pG~l~~A~---gGvLfLDEi~e~~-----------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 287 PGEISLAH---NGVLFLDELPEFE-----------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred hhHhhhcc---CCEEecCCchhCC-----------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceec
Confidence 11233332 3599999987643 234556666653211 124688999998752
Q ss_pred -----------------CCCHHhhccCCcceEEEeCCCCHH
Q 004384 306 -----------------SIDPALRRFGRFDREIDIGVPDEV 329 (757)
Q Consensus 306 -----------------~ld~~l~r~~rf~~~i~i~~p~~~ 329 (757)
.++..+.. ||+..+.++.|+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 24445555 89999999988865
No 497
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.00 E-value=2.5e-05 Score=88.81 Aligned_cols=169 Identities=24% Similarity=0.311 Sum_probs=100.2
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccc-----cCchhH-------HHHHHHHHHHhCCCeEEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW-----FGESEA-------NVREIFDKARQSAPCVLFF 530 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~-----~g~~e~-------~i~~lf~~a~~~~p~il~i 530 (757)
..+++.|++|||||++|+++...+ +.+|+.++|+.+.... +|.... .....|..+ ....+||
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l 238 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFL 238 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEE
Confidence 459999999999999999999876 4689999998763211 111000 000112222 2348999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----C----CCeEEEEeeCCCC-------CCCCccccCCCcc-
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRP-------DIIDPALLRPGRL- 593 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~tTn~~-------~~ld~allrpgRf- 593 (757)
|||+.+. ......|+..++... . ..++-||+||+.. ..+.+.+.. ||
T Consensus 239 ~~i~~l~--------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~ 302 (469)
T PRK10923 239 DEIGDMP--------------LDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLN 302 (469)
T ss_pred eccccCC--------------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc
Confidence 9999974 344556666555321 1 1246788888763 134455555 66
Q ss_pred ceEEEecCCCH--HHHHHHHHHhhccC----CCC-CccC---HHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 594 DQLIYIPLPDE--DSRHQIFKACLRKS----PVS-KDVD---LRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 594 ~~~i~~~~p~~--~~r~~Il~~~l~~~----~~~-~~~d---~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
...|.+|+... ++...+++.++++. +.. ..+. +..|..+.---+-++++++++.|...+-
T Consensus 303 ~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 303 VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 36667776533 45566666666432 111 1122 3344433322366899999999887653
No 498
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.00 E-value=1.1e-05 Score=91.44 Aligned_cols=153 Identities=28% Similarity=0.422 Sum_probs=89.4
Q ss_pred CCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 004384 155 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 231 (757)
Q Consensus 155 ~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~ 231 (757)
-.|+++.|....++++++.+...- ....+|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A-----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA-----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 457889999998888877775311 234679999999999999999997653 568999999765321
Q ss_pred c-----cchhHH--------HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----C--
Q 004384 232 L-----AGESES--------NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S-- 291 (757)
Q Consensus 232 ~-----~g~~~~--------~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----~-- 291 (757)
. .|..+. .-...|+.+ ....||||||+.+... +...|+..++.-. .
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPLP-----------LQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCHH-----------HHHHHHHHHhcCcEEecCCCc
Confidence 1 111000 001123333 2358999999987532 3345565554311 0
Q ss_pred --CCeEEEEEecCCC-C-CCCH-Hhhc--cCCcceEEEeCCCCHHHHHH
Q 004384 292 --RAHVIVIGATNRP-N-SIDP-ALRR--FGRFDREIDIGVPDEVGRLE 333 (757)
Q Consensus 292 --~~~v~vI~atn~~-~-~ld~-~l~r--~~rf~~~i~i~~p~~~~r~~ 333 (757)
...+-+|++|+.. . .+.. .++. ..|+. .+.+..|...+|.+
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~e 391 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPG 391 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchh
Confidence 1235677777653 1 1111 1111 11332 24566666666654
No 499
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=0.00012 Score=77.59 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=86.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC-----------------------eEEEEechhhhhhccchhHHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGA-----------------------FFFCINGPEIMSKLAGESESNLRKAFEEAE 248 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~-----------------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~ 248 (757)
+..+||+||.|+||+++|+.+|..+-. .++.+.... .++. -.-..++.+.+.+.
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~~~~ 101 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNRLAQ 101 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHHHHh
Confidence 346999999999999999999987632 122222110 0000 12234555444332
Q ss_pred ----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeC
Q 004384 249 ----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIG 324 (757)
Q Consensus 249 ----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~ 324 (757)
.....|++||++|.+.. ...+.|++.+++-. .++++|..|+.++.+-|.+++ |. ..+.++
T Consensus 102 ~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp--~~t~fiL~t~~~~~lLpTI~S--RC-q~~~~~ 165 (319)
T PRK06090 102 ESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPA--PNCLFLLVTHNQKRLLPTIVS--RC-QQWVVT 165 (319)
T ss_pred hCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCC--CCeEEEEEECChhhChHHHHh--cc-eeEeCC
Confidence 23346999999998853 23467888888743 467788888889999999998 76 568899
Q ss_pred CCCHHHHHHHHHH
Q 004384 325 VPDEVGRLEVLRI 337 (757)
Q Consensus 325 ~p~~~~r~~il~~ 337 (757)
.|+.++..+.+..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888777754
No 500
>PRK15115 response regulator GlrR; Provisional
Probab=97.99 E-value=2.9e-05 Score=87.69 Aligned_cols=164 Identities=23% Similarity=0.348 Sum_probs=94.0
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHH---------------HhCCCeE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKA---------------RQSAPCV 527 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a---------------~~~~p~i 527 (757)
..++|+|++|||||++|+++.... +.+|+.+++..+.... .-..+|..+ .......
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQL------LESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHH------HHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 348999999999999999998875 4689999988753211 111222111 1122358
Q ss_pred EEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----C----CCeEEEEeeCCCCCCCCccccCCCccce---
Q 004384 528 LFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----A----KKTVFIIGATNRPDIIDPALLRPGRLDQ--- 595 (757)
Q Consensus 528 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----~----~~~v~vi~tTn~~~~ld~allrpgRf~~--- 595 (757)
||||||+.|.. .....|+..|+.-. . ..++-+|+||+.. ++..+.+ |+|..
T Consensus 232 l~l~~i~~l~~--------------~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~--l~~~~~~-~~f~~~l~ 294 (444)
T PRK15115 232 LFLDEIGDMPA--------------PLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD--LPKAMAR-GEFREDLY 294 (444)
T ss_pred EEEEccccCCH--------------HHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC--HHHHHHc-CCccHHHH
Confidence 99999999743 34455665554321 1 1257888888863 3333333 45521
Q ss_pred ----EEEecCCCHHHH----HHHHHHhhccC----CCC-CccC---HHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 596 ----LIYIPLPDEDSR----HQIFKACLRKS----PVS-KDVD---LRALAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 596 ----~i~~~~p~~~~r----~~Il~~~l~~~----~~~-~~~d---~~~la~~~~g~sg~di~~~~~~a~~~a 652 (757)
.+.+..|...+| ..+++.++++. ... ..++ +..|..+.---+.++++++++.|+..+
T Consensus 295 ~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 295 YRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALT 367 (444)
T ss_pred HhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 233344444444 33455555432 111 1122 444444442346789999998887654
Done!