Query 004384
Match_columns 757
No_of_seqs 694 out of 5064
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 23:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 1E-125 3E-130 1102.4 45.1 730 1-732 46-776 (806)
2 1ypw_A Transitional endoplasmi 100.0 1.6E-99 5E-104 901.2 35.9 731 1-733 46-777 (806)
3 4b4t_J 26S protease regulatory 100.0 2.3E-57 7.7E-62 487.2 22.4 275 413-713 130-404 (405)
4 3hu3_A Transitional endoplasmi 100.0 6.8E-55 2.3E-59 488.5 39.1 439 1-439 46-485 (489)
5 4b4t_I 26S protease regulatory 100.0 3.4E-55 1.1E-59 470.5 21.6 262 420-707 171-432 (437)
6 4b4t_H 26S protease regulatory 100.0 3.6E-54 1.2E-58 467.1 23.1 268 421-714 199-467 (467)
7 4b4t_L 26S protease subunit RP 100.0 7.5E-54 2.6E-58 467.9 25.3 271 415-711 165-435 (437)
8 4b4t_M 26S protease regulatory 100.0 1.6E-53 5.6E-58 464.9 25.9 264 415-704 165-428 (434)
9 4b4t_K 26S protease regulatory 100.0 3.6E-53 1.2E-57 462.1 21.6 264 421-710 162-427 (428)
10 3cf0_A Transitional endoplasmi 100.0 6.4E-46 2.2E-50 393.9 25.7 300 418-718 2-301 (301)
11 3cf2_A TER ATPase, transitiona 100.0 9E-45 3.1E-49 422.6 21.4 266 425-702 198-463 (806)
12 4b4t_J 26S protease regulatory 100.0 1.8E-43 6.1E-48 379.5 28.0 249 150-415 140-391 (405)
13 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-43 4.9E-48 378.8 27.1 293 422-720 3-321 (322)
14 2x8a_A Nuclear valosin-contain 100.0 1.1E-43 3.6E-48 370.5 21.0 266 424-707 3-273 (274)
15 4b4t_I 26S protease regulatory 100.0 2.4E-42 8.1E-47 371.0 26.8 249 151-416 175-426 (437)
16 3eie_A Vacuolar protein sortin 100.0 4.6E-42 1.6E-46 368.0 22.8 294 421-720 8-320 (322)
17 4b4t_M 26S protease regulatory 100.0 1.5E-41 5E-46 370.7 26.3 250 151-417 174-426 (434)
18 4b4t_H 26S protease regulatory 100.0 2.4E-41 8.3E-46 366.8 27.2 246 151-413 202-450 (467)
19 4b4t_L 26S protease subunit RP 100.0 1.3E-41 4.4E-46 371.4 24.9 249 151-416 174-425 (437)
20 2qp9_X Vacuolar protein sortin 100.0 3.5E-41 1.2E-45 365.3 24.6 292 423-720 43-353 (355)
21 4b4t_K 26S protease regulatory 100.0 1.4E-40 4.9E-45 362.8 27.2 245 151-412 165-413 (428)
22 2zan_A Vacuolar protein sortin 100.0 1.5E-40 5.2E-45 370.7 21.6 293 422-720 125-443 (444)
23 2ce7_A Cell division protein F 100.0 2E-37 6.8E-42 343.9 23.7 248 426-700 11-258 (476)
24 1lv7_A FTSH; alpha/beta domain 100.0 5.3E-36 1.8E-40 310.7 26.7 250 425-701 6-255 (257)
25 3h4m_A Proteasome-activating n 100.0 2.4E-36 8.4E-41 318.1 23.1 271 423-719 9-281 (285)
26 3d8b_A Fidgetin-like protein 1 100.0 2.5E-36 8.6E-41 327.8 21.2 275 425-719 78-355 (357)
27 3b9p_A CG5977-PA, isoform A; A 100.0 2.5E-36 8.4E-41 320.1 20.3 276 425-720 15-294 (297)
28 2dhr_A FTSH; AAA+ protein, hex 100.0 1.5E-35 5.2E-40 330.6 23.2 248 426-700 26-273 (499)
29 3hu3_A Transitional endoplasmi 100.0 2.9E-36 1E-40 337.6 16.3 266 427-704 200-465 (489)
30 1ixz_A ATP-dependent metallopr 100.0 8.3E-35 2.8E-39 301.1 22.2 246 423-695 8-253 (254)
31 3vfd_A Spastin; ATPase, microt 100.0 2.2E-34 7.6E-39 316.6 22.9 277 423-719 107-386 (389)
32 2x8a_A Nuclear valosin-contain 100.0 5.8E-34 2E-38 296.9 23.8 262 152-419 4-270 (274)
33 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.5E-34 5E-39 300.5 17.0 248 426-700 1-251 (262)
34 1r6b_X CLPA protein; AAA+, N-t 100.0 3E-33 1E-37 333.8 28.9 435 154-657 182-720 (758)
35 1iy2_A ATP-dependent metallopr 100.0 3.2E-33 1.1E-37 293.1 22.2 244 425-695 34-277 (278)
36 3pxi_A Negative regulator of g 100.0 1E-32 3.5E-37 328.6 29.4 443 153-657 175-729 (758)
37 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.8E-32 1.3E-36 290.3 27.1 227 152-381 6-235 (322)
38 2r62_A Cell division protease 100.0 1.1E-34 3.9E-39 302.5 4.0 253 425-704 5-259 (268)
39 3cf0_A Transitional endoplasmi 100.0 3.1E-32 1.1E-36 288.6 22.5 266 151-416 8-284 (301)
40 3eie_A Vacuolar protein sortin 100.0 3.5E-31 1.2E-35 283.4 22.8 264 151-417 11-302 (322)
41 2qp9_X Vacuolar protein sortin 100.0 8.7E-31 3E-35 283.6 24.3 264 151-417 44-335 (355)
42 1qvr_A CLPB protein; coiled co 100.0 4.3E-31 1.5E-35 317.9 22.7 460 153-658 165-825 (854)
43 2ce7_A Cell division protein F 100.0 2.7E-29 9.2E-34 278.7 25.9 246 152-415 10-258 (476)
44 1ypw_A Transitional endoplasmi 100.0 5.2E-30 1.8E-34 304.6 20.5 264 426-701 199-462 (806)
45 2zan_A Vacuolar protein sortin 100.0 8.6E-30 3E-34 283.8 20.0 228 151-381 127-357 (444)
46 3h4m_A Proteasome-activating n 100.0 1.7E-28 5.8E-33 258.2 25.0 230 151-380 10-242 (285)
47 1lv7_A FTSH; alpha/beta domain 100.0 2.7E-28 9.2E-33 252.6 25.6 227 152-379 6-235 (257)
48 2dhr_A FTSH; AAA+ protein, hex 100.0 3.7E-28 1.3E-32 271.1 22.8 245 153-415 26-273 (499)
49 1ixz_A ATP-dependent metallopr 100.0 4.4E-27 1.5E-31 243.0 26.2 228 151-379 9-239 (254)
50 2qz4_A Paraplegin; AAA+, SPG7, 99.9 4.9E-27 1.7E-31 243.6 21.1 225 154-379 2-232 (262)
51 3b9p_A CG5977-PA, isoform A; A 99.9 3.5E-27 1.2E-31 249.6 19.7 260 151-418 14-277 (297)
52 3d8b_A Fidgetin-like protein 1 99.9 1.3E-26 4.3E-31 251.4 23.8 260 151-418 77-339 (357)
53 3t15_A Ribulose bisphosphate c 99.9 8.9E-28 3.1E-32 253.1 13.8 176 461-643 32-222 (293)
54 1iy2_A ATP-dependent metallopr 99.9 6.7E-26 2.3E-30 237.4 27.2 226 153-379 35-263 (278)
55 3vfd_A Spastin; ATPase, microt 99.9 1.2E-25 4.2E-30 246.9 22.5 258 151-416 108-368 (389)
56 2c9o_A RUVB-like 1; hexameric 99.9 5.9E-27 2E-31 262.3 10.7 360 154-698 33-437 (456)
57 2r62_A Cell division protease 99.9 2E-27 6.8E-32 247.7 4.2 249 152-418 5-258 (268)
58 3qwz_A Transitional endoplasmi 99.9 1.4E-25 4.8E-30 219.1 15.3 162 1-162 49-211 (211)
59 1g41_A Heat shock protein HSLU 99.9 3.9E-24 1.3E-28 233.7 20.8 170 158-336 15-189 (444)
60 2c9o_A RUVB-like 1; hexameric 99.9 1.6E-26 5.4E-31 258.9 -2.7 204 426-647 32-262 (456)
61 3cmw_A Protein RECA, recombina 99.9 1.3E-24 4.6E-29 268.7 4.8 155 425-580 1014-1218(1706)
62 3tiw_A Transitional endoplasmi 99.9 5.8E-23 2E-27 197.0 14.8 142 1-142 46-187 (187)
63 3syl_A Protein CBBX; photosynt 99.9 7.8E-22 2.7E-26 209.6 12.5 216 430-658 30-268 (309)
64 3t15_A Ribulose bisphosphate c 99.9 2.2E-21 7.4E-26 204.2 14.4 174 188-367 32-222 (293)
65 1g41_A Heat shock protein HSLU 99.8 7.2E-22 2.4E-26 215.8 3.7 169 431-611 15-188 (444)
66 3uk6_A RUVB-like 2; hexameric 99.8 6.9E-20 2.4E-24 199.6 15.6 220 426-698 39-330 (368)
67 3m6a_A ATP-dependent protease 99.8 8.9E-21 3E-25 216.0 8.4 232 427-700 77-343 (543)
68 1ofh_A ATP-dependent HSL prote 99.8 3.2E-19 1.1E-23 189.3 13.4 245 431-699 15-300 (310)
69 1d2n_A N-ethylmaleimide-sensit 99.8 1.2E-18 4E-23 181.7 14.8 178 461-650 60-247 (272)
70 3hws_A ATP-dependent CLP prote 99.8 4.2E-19 1.4E-23 193.0 11.2 223 432-656 16-326 (363)
71 3pfi_A Holliday junction ATP-d 99.8 1.1E-17 3.9E-22 179.9 19.2 194 427-653 25-235 (338)
72 1cz4_A VCP-like ATPase; double 99.7 7.4E-18 2.5E-22 162.3 13.4 138 1-145 31-178 (185)
73 3syl_A Protein CBBX; photosynt 99.7 1.9E-17 6.4E-22 175.7 16.5 211 159-379 32-265 (309)
74 2z4s_A Chromosomal replication 99.7 3.3E-17 1.1E-21 181.9 14.5 193 465-699 130-333 (440)
75 1hqc_A RUVB; extended AAA-ATPa 99.7 1.3E-16 4.3E-21 170.5 17.8 194 427-652 8-218 (324)
76 1um8_A ATP-dependent CLP prote 99.7 3.5E-17 1.2E-21 178.7 11.4 245 432-698 22-365 (376)
77 2v1u_A Cell division control p 99.7 1.2E-15 4.2E-20 166.7 20.6 204 430-654 18-258 (387)
78 1l8q_A Chromosomal replication 99.7 5E-16 1.7E-20 166.0 16.2 169 465-651 37-214 (324)
79 1r6b_X CLPA protein; AAA+, N-t 99.7 9.6E-16 3.3E-20 182.6 19.4 199 428-651 183-408 (758)
80 3pvs_A Replication-associated 99.7 3.2E-16 1.1E-20 173.7 13.7 208 427-700 22-246 (447)
81 4fcw_A Chaperone protein CLPB; 99.6 2.8E-16 9.5E-21 166.8 11.4 206 431-658 17-284 (311)
82 1g8p_A Magnesium-chelatase 38 99.6 1.1E-15 3.9E-20 164.9 15.4 161 425-614 18-231 (350)
83 3m6a_A ATP-dependent protease 99.6 3.5E-16 1.2E-20 178.2 11.7 169 153-339 76-266 (543)
84 4akg_A Glutathione S-transfera 99.6 8.3E-15 2.8E-19 189.5 25.7 323 191-534 1266-1677(2695)
85 3cmw_A Protein RECA, recombina 99.6 4.3E-15 1.5E-19 184.4 22.0 149 154-303 1016-1217(1706)
86 3pxg_A Negative regulator of g 99.6 4.4E-16 1.5E-20 174.4 11.7 185 427-652 176-385 (468)
87 1d2n_A N-ethylmaleimide-sensit 99.6 3.6E-15 1.2E-19 155.1 17.3 195 157-360 32-229 (272)
88 2chg_A Replication factor C sm 99.6 7.5E-15 2.6E-19 147.0 18.3 200 427-696 13-224 (226)
89 1sxj_A Activator 1 95 kDa subu 99.6 8.3E-16 2.8E-20 174.5 12.4 200 427-648 35-252 (516)
90 3bos_A Putative DNA replicatio 99.6 2.8E-15 9.7E-20 152.4 15.0 205 427-696 24-241 (242)
91 1ofh_A ATP-dependent HSL prote 99.6 9E-15 3.1E-19 154.9 19.2 216 158-375 15-272 (310)
92 1jbk_A CLPB protein; beta barr 99.6 5.9E-16 2E-20 151.3 8.9 159 427-611 18-194 (195)
93 2r44_A Uncharacterized protein 99.6 1.5E-15 5E-20 162.9 12.5 155 430-618 26-201 (331)
94 3te6_A Regulatory protein SIR3 99.6 1.9E-15 6.6E-20 158.6 12.8 139 463-618 43-214 (318)
95 1in4_A RUVB, holliday junction 99.6 4.4E-14 1.5E-18 151.3 23.6 231 428-717 22-272 (334)
96 3pxi_A Negative regulator of g 99.6 1.7E-15 5.7E-20 180.3 13.4 186 427-653 176-386 (758)
97 2qby_B CDC6 homolog 3, cell di 99.6 7.7E-15 2.6E-19 160.4 17.6 194 431-653 20-253 (384)
98 1njg_A DNA polymerase III subu 99.6 1.2E-14 4.3E-19 147.4 16.9 184 428-649 20-232 (250)
99 3pfi_A Holliday junction ATP-d 99.6 3.8E-14 1.3E-18 152.2 21.3 195 151-375 22-233 (338)
100 1qvr_A CLPB protein; coiled co 99.6 2.9E-15 9.9E-20 180.2 13.8 201 427-653 166-393 (854)
101 4akg_A Glutathione S-transfera 99.6 3.8E-14 1.3E-18 183.4 24.0 174 462-650 1264-1487(2695)
102 3uk6_A RUVB-like 2; hexameric 99.6 3.3E-14 1.1E-18 154.5 20.1 200 156-379 42-313 (368)
103 1wlf_A PEX1, peroxisome biogen 99.6 4.6E-15 1.6E-19 142.0 11.2 138 1-140 34-176 (179)
104 2qby_A CDC6 homolog 1, cell di 99.6 2.3E-14 8E-19 156.4 17.7 204 429-654 18-254 (386)
105 3hws_A ATP-dependent CLP prote 99.6 3.5E-14 1.2E-18 154.1 17.8 219 159-379 16-325 (363)
106 3cmu_A Protein RECA, recombina 99.6 2.7E-15 9.4E-20 187.7 8.1 171 408-578 655-867 (2050)
107 3u61_B DNA polymerase accessor 99.5 2E-14 7E-19 153.4 13.7 183 428-648 23-219 (324)
108 1fnn_A CDC6P, cell division co 99.5 8.4E-14 2.9E-18 152.3 18.8 201 430-655 16-257 (389)
109 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.3E-14 4.5E-19 162.0 11.9 192 432-656 23-270 (500)
110 1jbk_A CLPB protein; beta barr 99.5 2.4E-14 8.1E-19 139.8 12.0 160 153-335 17-194 (195)
111 1sxj_D Activator 1 41 kDa subu 99.5 7.4E-14 2.5E-18 150.7 16.8 186 427-651 33-241 (353)
112 2p65_A Hypothetical protein PF 99.5 4.6E-15 1.6E-19 144.3 6.1 151 428-603 19-187 (187)
113 1l8q_A Chromosomal replication 99.5 3.6E-13 1.2E-17 143.7 20.0 194 154-374 7-213 (324)
114 3pxg_A Negative regulator of g 99.5 1.3E-13 4.5E-18 154.3 15.8 185 153-375 175-384 (468)
115 1hqc_A RUVB; extended AAA-ATPa 99.5 4.3E-13 1.5E-17 143.0 19.0 193 151-372 5-214 (324)
116 3cmu_A Protein RECA, recombina 99.5 9.6E-14 3.3E-18 173.9 15.7 117 461-577 1423-1561(2050)
117 2chq_A Replication factor C sm 99.5 2.6E-13 8.8E-18 144.2 16.0 188 427-649 13-208 (319)
118 2z4s_A Chromosomal replication 99.5 5.3E-13 1.8E-17 148.1 18.9 172 192-376 130-313 (440)
119 3vlf_B 26S protease regulatory 99.5 7E-14 2.4E-18 118.1 7.9 86 603-714 2-88 (88)
120 3aji_B S6C, proteasome (prosom 99.5 3.5E-14 1.2E-18 118.9 5.9 82 603-711 2-83 (83)
121 3f9v_A Minichromosome maintena 99.5 2.2E-14 7.4E-19 164.7 6.0 164 432-618 296-493 (595)
122 1sxj_B Activator 1 37 kDa subu 99.5 6.3E-13 2.2E-17 141.4 16.7 184 427-649 17-213 (323)
123 2p65_A Hypothetical protein PF 99.5 1.3E-13 4.4E-18 134.0 10.0 153 153-327 17-187 (187)
124 1jr3_A DNA polymerase III subu 99.5 7.1E-13 2.4E-17 144.1 16.5 185 428-650 13-226 (373)
125 3u61_B DNA polymerase accessor 99.4 1.4E-12 4.6E-17 139.2 17.7 178 151-362 19-210 (324)
126 1um8_A ATP-dependent CLP prote 99.4 1.4E-12 4.7E-17 142.2 18.0 220 158-379 21-342 (376)
127 2v1u_A Cell division control p 99.4 2.8E-12 9.7E-17 139.9 19.6 201 157-376 18-256 (387)
128 2chg_A Replication factor C sm 99.4 8.1E-12 2.8E-16 124.7 21.1 183 152-371 11-206 (226)
129 2krk_A 26S protease regulatory 99.4 1.7E-13 6E-18 114.8 7.1 77 599-701 8-84 (86)
130 4fcw_A Chaperone protein CLPB; 99.4 2E-12 7E-17 136.9 17.3 202 158-379 17-281 (311)
131 3bos_A Putative DNA replicatio 99.4 6.1E-12 2.1E-16 127.6 19.8 187 155-376 25-224 (242)
132 3pvs_A Replication-associated 99.4 2.8E-12 9.6E-17 142.0 18.1 185 151-374 19-220 (447)
133 3kw6_A 26S protease regulatory 99.4 3E-13 1E-17 111.6 7.6 75 600-700 1-75 (78)
134 1iqp_A RFCS; clamp loader, ext 99.4 1.4E-12 4.8E-17 139.0 14.8 184 427-649 21-216 (327)
135 1sxj_A Activator 1 95 kDa subu 99.4 1.2E-12 4E-17 148.6 13.8 194 151-359 32-243 (516)
136 2qby_B CDC6 homolog 3, cell di 99.4 1.1E-11 3.8E-16 135.2 20.8 192 158-374 20-250 (384)
137 3te6_A Regulatory protein SIR3 99.4 2.8E-12 9.6E-17 134.6 14.9 159 160-341 22-213 (318)
138 2bjv_A PSP operon transcriptio 99.4 9.7E-13 3.3E-17 136.1 11.2 194 428-651 3-239 (265)
139 1sxj_E Activator 1 40 kDa subu 99.4 2.9E-12 9.9E-17 138.3 14.6 187 427-650 10-242 (354)
140 1njg_A DNA polymerase III subu 99.4 9.4E-12 3.2E-16 126.0 16.9 188 151-373 16-232 (250)
141 1ojl_A Transcriptional regulat 99.3 1.3E-12 4.6E-17 137.6 9.2 190 432-652 3-235 (304)
142 2dzn_B 26S protease regulatory 99.3 3.5E-13 1.2E-17 112.3 3.3 81 605-711 1-82 (82)
143 1in4_A RUVB, holliday junction 99.3 7.2E-11 2.5E-15 126.3 22.1 195 152-376 19-230 (334)
144 2qby_A CDC6 homolog 1, cell di 99.3 3.6E-11 1.2E-15 130.9 20.2 201 156-376 18-252 (386)
145 1fnn_A CDC6P, cell division co 99.3 6E-11 2E-15 129.5 20.7 198 157-377 16-255 (389)
146 1sxj_D Activator 1 41 kDa subu 99.3 2.5E-11 8.6E-16 130.8 16.4 176 151-361 30-228 (353)
147 1g8p_A Magnesium-chelatase 38 99.3 4.1E-11 1.4E-15 129.0 18.0 159 153-337 19-230 (350)
148 2r44_A Uncharacterized protein 99.3 2.6E-11 8.9E-16 129.6 15.8 153 156-341 25-200 (331)
149 2chq_A Replication factor C sm 99.3 3.3E-11 1.1E-15 127.8 16.1 179 151-360 10-196 (319)
150 1a5t_A Delta prime, HOLB; zinc 99.3 6.9E-11 2.3E-15 126.4 18.0 158 464-648 23-208 (334)
151 1sxj_B Activator 1 37 kDa subu 99.3 6.2E-11 2.1E-15 125.9 17.5 175 151-361 14-202 (323)
152 3k1j_A LON protease, ATP-depen 99.3 6.4E-12 2.2E-16 145.2 10.0 229 425-711 35-387 (604)
153 1iqp_A RFCS; clamp loader, ext 99.3 1.3E-10 4.4E-15 123.6 19.5 179 151-360 18-204 (327)
154 1sxj_C Activator 1 40 kDa subu 99.3 1.6E-11 5.4E-16 131.8 11.8 171 427-635 21-203 (340)
155 1sxj_E Activator 1 40 kDa subu 99.2 9E-11 3.1E-15 126.6 16.7 177 151-360 7-229 (354)
156 3n70_A Transport activator; si 99.2 7.5E-12 2.6E-16 116.8 6.0 90 465-580 24-116 (145)
157 1w5s_A Origin recognition comp 99.2 2.2E-10 7.5E-15 126.1 18.4 205 431-654 22-275 (412)
158 1jr3_A DNA polymerase III subu 99.2 2.5E-10 8.7E-15 123.9 18.5 187 151-372 9-224 (373)
159 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 9.7E-11 3.3E-15 130.8 15.2 151 159-338 23-195 (500)
160 3vkg_A Dynein heavy chain, cyt 99.2 2.4E-10 8.3E-15 148.9 20.8 323 191-534 1303-1714(3245)
161 3co5_A Putative two-component 99.2 4.9E-12 1.7E-16 117.8 2.9 132 432-602 5-142 (143)
162 2bjv_A PSP operon transcriptio 99.2 1.1E-10 3.9E-15 120.4 12.6 148 156-331 4-182 (265)
163 2gno_A DNA polymerase III, gam 99.2 1.1E-10 3.9E-15 122.6 11.7 142 435-615 1-152 (305)
164 1sxj_C Activator 1 40 kDa subu 99.1 2.2E-09 7.6E-14 115.0 19.7 173 151-359 18-203 (340)
165 1ojl_A Transcriptional regulat 99.1 6.3E-10 2.2E-14 117.1 12.4 189 159-374 3-233 (304)
166 3co5_A Putative two-component 99.1 1.8E-10 6.3E-15 107.0 7.1 112 159-304 5-116 (143)
167 3n70_A Transport activator; si 99.1 3.4E-10 1.2E-14 105.5 8.9 112 159-304 2-116 (145)
168 1a5t_A Delta prime, HOLB; zinc 98.9 3.2E-08 1.1E-12 105.6 20.4 147 192-361 24-198 (334)
169 3ec2_A DNA replication protein 98.9 2.4E-09 8.2E-14 103.5 9.9 100 152-263 4-112 (180)
170 3f9v_A Minichromosome maintena 98.9 1.6E-09 5.4E-14 124.3 7.1 163 158-340 295-491 (595)
171 2vhj_A Ntpase P4, P4; non- hyd 98.9 9E-10 3.1E-14 114.3 4.6 122 461-587 119-242 (331)
172 2gno_A DNA polymerase III, gam 98.8 2.6E-08 8.8E-13 104.5 14.8 142 162-339 1-152 (305)
173 1w5s_A Origin recognition comp 98.8 7.6E-08 2.6E-12 105.6 18.7 205 157-376 21-273 (412)
174 3j16_B RLI1P; ribosome recycli 98.8 9.8E-09 3.4E-13 117.4 9.3 28 189-216 100-127 (608)
175 1tf7_A KAIC; homohexamer, hexa 98.8 2.4E-07 8.1E-12 105.1 20.6 114 188-307 35-188 (525)
176 2kjq_A DNAA-related protein; s 98.8 6.8E-09 2.3E-13 97.0 6.2 97 191-313 35-137 (149)
177 3ec2_A DNA replication protein 98.7 5E-09 1.7E-13 101.2 5.0 105 461-580 34-143 (180)
178 2kjq_A DNAA-related protein; s 98.7 6.1E-09 2.1E-13 97.3 5.3 105 464-599 35-145 (149)
179 3vkg_A Dynein heavy chain, cyt 98.7 1E-07 3.5E-12 124.6 17.7 128 192-336 604-750 (3245)
180 3k1j_A LON protease, ATP-depen 98.7 2.9E-08 9.9E-13 114.6 11.1 52 151-217 34-85 (604)
181 1svm_A Large T antigen; AAA+ f 98.7 7.7E-09 2.6E-13 111.3 5.6 119 461-601 165-284 (377)
182 3ozx_A RNAse L inhibitor; ATP 98.7 3.2E-08 1.1E-12 111.8 9.4 27 190-216 23-49 (538)
183 2krk_A 26S protease regulatory 98.6 2.9E-08 1E-12 82.8 5.6 76 323-415 8-83 (86)
184 3f8t_A Predicted ATPase involv 98.6 5.6E-08 1.9E-12 105.4 8.5 144 433-606 215-385 (506)
185 2fna_A Conserved hypothetical 98.6 1.7E-06 5.9E-11 92.5 20.0 184 430-647 12-252 (357)
186 2vhj_A Ntpase P4, P4; non- hyd 98.6 2.4E-08 8.2E-13 103.7 4.5 120 188-311 119-242 (331)
187 2r2a_A Uncharacterized protein 98.6 7.5E-08 2.6E-12 94.2 7.7 126 467-605 7-156 (199)
188 3kw6_A 26S protease regulatory 98.6 7.9E-08 2.7E-12 78.9 6.4 73 324-413 1-73 (78)
189 2w58_A DNAI, primosome compone 98.5 9.1E-08 3.1E-12 94.1 5.7 70 466-537 55-128 (202)
190 2iw3_A Elongation factor 3A; a 98.5 4.4E-08 1.5E-12 116.3 3.9 29 186-214 455-483 (986)
191 1yqt_A RNAse L inhibitor; ATP- 98.5 1.3E-07 4.3E-12 107.2 6.7 29 188-216 43-71 (538)
192 3vlf_B 26S protease regulatory 98.4 2.5E-07 8.7E-12 77.6 6.5 74 327-417 2-75 (88)
193 3bk7_A ABC transporter ATP-bin 98.4 1E-07 3.4E-12 109.2 5.3 29 188-216 113-141 (607)
194 1ny5_A Transcriptional regulat 98.4 3.2E-07 1.1E-11 99.8 8.4 166 466-651 161-369 (387)
195 2qen_A Walker-type ATPase; unk 98.4 1.2E-05 4E-10 85.8 20.4 180 157-362 11-240 (350)
196 2w58_A DNAI, primosome compone 98.4 2.7E-07 9.4E-12 90.6 6.6 70 193-264 55-128 (202)
197 2qen_A Walker-type ATPase; unk 98.4 4.3E-06 1.5E-10 89.1 16.5 187 430-646 11-247 (350)
198 2fna_A Conserved hypothetical 98.4 8.7E-06 3E-10 87.0 18.2 179 156-362 11-244 (357)
199 3aji_B S6C, proteasome (prosom 98.3 4E-07 1.4E-11 75.6 5.3 74 327-417 2-75 (83)
200 3dzd_A Transcriptional regulat 98.3 4.2E-07 1.4E-11 98.1 6.0 166 466-651 153-360 (368)
201 1svm_A Large T antigen; AAA+ f 98.3 2.2E-07 7.5E-12 100.0 3.6 120 186-325 163-284 (377)
202 1ye8_A Protein THEP1, hypothet 98.3 3.5E-06 1.2E-10 80.9 11.7 26 194-219 2-27 (178)
203 2qgz_A Helicase loader, putati 98.3 5.6E-07 1.9E-11 94.6 6.1 70 465-536 152-226 (308)
204 1tue_A Replication protein E1; 98.2 6.8E-07 2.3E-11 86.5 4.3 110 462-601 55-178 (212)
205 2r2a_A Uncharacterized protein 98.2 1.8E-06 6.2E-11 84.3 7.3 124 194-327 7-154 (199)
206 3ux8_A Excinuclease ABC, A sub 98.2 5.9E-07 2E-11 105.0 3.9 23 187-209 39-61 (670)
207 1ye8_A Protein THEP1, hypothet 98.2 7.2E-06 2.5E-10 78.7 10.9 25 468-492 3-27 (178)
208 4g1u_C Hemin import ATP-bindin 98.2 2E-06 6.8E-11 88.3 6.6 30 187-216 32-61 (266)
209 3rlf_A Maltose/maltodextrin im 98.1 2.1E-06 7.1E-11 92.0 6.5 32 186-217 23-54 (381)
210 3gfo_A Cobalt import ATP-bindi 98.1 1.8E-06 6.2E-11 88.9 5.9 31 187-217 29-59 (275)
211 2qgz_A Helicase loader, putati 98.1 1.9E-06 6.6E-11 90.5 5.9 70 192-263 152-226 (308)
212 4gp7_A Metallophosphoesterase; 98.1 4.2E-06 1.4E-10 79.8 7.0 25 187-211 4-28 (171)
213 3fvq_A Fe(3+) IONS import ATP- 98.1 3.3E-06 1.1E-10 89.8 6.7 32 186-217 24-55 (359)
214 3tui_C Methionine import ATP-b 98.1 3.3E-06 1.1E-10 89.9 6.6 31 187-217 49-79 (366)
215 3tif_A Uncharacterized ABC tra 98.1 3.4E-06 1.2E-10 84.9 6.2 32 186-217 25-56 (235)
216 1n0w_A DNA repair protein RAD5 98.1 7.5E-06 2.6E-10 82.6 8.5 79 188-266 20-134 (243)
217 1tue_A Replication protein E1; 98.0 8.7E-06 3E-10 78.7 8.3 33 188-220 54-86 (212)
218 2jv2_A Putative uncharacterize 98.0 2.2E-05 7.5E-10 64.1 9.3 71 65-141 11-81 (83)
219 2yyz_A Sugar ABC transporter, 98.0 4.4E-06 1.5E-10 89.1 6.7 32 186-217 23-54 (359)
220 2w0m_A SSO2452; RECA, SSPF, un 98.0 1.2E-05 4.1E-10 80.4 9.5 109 188-304 19-168 (235)
221 2it1_A 362AA long hypothetical 98.0 4.6E-06 1.6E-10 89.0 6.7 32 186-217 23-54 (362)
222 1z47_A CYSA, putative ABC-tran 98.0 3.9E-06 1.4E-10 89.2 5.9 31 187-217 36-66 (355)
223 4a74_A DNA repair and recombin 98.0 6.4E-06 2.2E-10 82.3 7.3 29 188-216 21-49 (231)
224 1v43_A Sugar-binding transport 98.0 5E-06 1.7E-10 89.1 6.1 31 187-217 32-62 (372)
225 1ny5_A Transcriptional regulat 98.0 2E-05 6.9E-10 85.5 10.8 122 158-304 137-282 (387)
226 2dzn_B 26S protease regulatory 98.0 3.3E-06 1.1E-10 69.8 3.3 69 329-414 1-69 (82)
227 2pcj_A ABC transporter, lipopr 98.0 6.6E-06 2.2E-10 82.2 5.9 31 187-217 25-55 (224)
228 2ehv_A Hypothetical protein PH 97.9 2.2E-05 7.7E-10 79.4 9.8 26 188-213 26-51 (251)
229 1g6h_A High-affinity branched- 97.9 1.2E-05 4E-10 82.1 7.6 31 187-217 28-58 (257)
230 1vpl_A ABC transporter, ATP-bi 97.9 1E-05 3.5E-10 82.4 7.0 31 187-217 36-66 (256)
231 3d31_A Sulfate/molybdate ABC t 97.9 6.3E-06 2.2E-10 87.5 5.4 32 186-217 20-51 (348)
232 2cvh_A DNA repair and recombin 97.9 2.2E-05 7.5E-10 77.7 8.9 39 188-226 16-54 (220)
233 2olj_A Amino acid ABC transpor 97.9 1.4E-05 5E-10 81.6 7.0 31 187-217 45-75 (263)
234 1g29_1 MALK, maltose transport 97.9 1E-05 3.5E-10 86.8 6.0 31 187-217 24-54 (372)
235 3gd7_A Fusion complex of cysti 97.9 1.5E-05 5.2E-10 85.9 6.9 31 186-216 41-71 (390)
236 3hr8_A Protein RECA; alpha and 97.9 5.4E-05 1.9E-09 80.5 11.0 114 188-301 57-195 (356)
237 2onk_A Molybdate/tungstate ABC 97.8 7.7E-06 2.6E-10 82.5 4.2 30 187-217 20-49 (240)
238 2ff7_A Alpha-hemolysin translo 97.8 1.6E-05 5.5E-10 80.5 5.8 31 187-217 30-60 (247)
239 1u0j_A DNA replication protein 97.8 1.9E-05 6.5E-10 80.0 6.3 28 464-491 103-130 (267)
240 1pzn_A RAD51, DNA repair and r 97.8 3E-05 1E-09 82.8 8.0 40 187-226 126-174 (349)
241 2nq2_C Hypothetical ABC transp 97.8 1.5E-05 5.1E-10 81.1 5.1 31 187-217 26-56 (253)
242 3dzd_A Transcriptional regulat 97.8 0.00021 7.3E-09 76.8 14.5 120 159-303 130-272 (368)
243 2cvh_A DNA repair and recombin 97.8 4.4E-05 1.5E-09 75.5 8.4 40 461-500 16-55 (220)
244 2yz2_A Putative ABC transporte 97.8 2.8E-05 9.4E-10 79.8 7.1 32 186-217 27-58 (266)
245 3hr8_A Protein RECA; alpha and 97.8 5.9E-05 2E-09 80.2 9.8 116 461-576 57-194 (356)
246 2ixe_A Antigen peptide transpo 97.8 4.2E-05 1.4E-09 78.6 8.4 32 186-217 39-70 (271)
247 3lda_A DNA repair protein RAD5 97.8 3.8E-05 1.3E-09 83.2 8.5 116 188-303 174-327 (400)
248 1oxx_K GLCV, glucose, ABC tran 97.8 9.3E-06 3.2E-10 86.6 3.2 32 186-217 25-56 (353)
249 2qi9_C Vitamin B12 import ATP- 97.8 2.5E-05 8.5E-10 79.2 6.0 32 186-217 20-51 (249)
250 1sgw_A Putative ABC transporte 97.7 1.4E-05 4.9E-10 78.9 4.0 31 187-217 30-60 (214)
251 2zr9_A Protein RECA, recombina 97.7 3.8E-05 1.3E-09 81.9 7.5 78 188-265 57-153 (349)
252 1ji0_A ABC transporter; ATP bi 97.7 2.3E-05 7.7E-10 79.1 5.4 31 187-217 27-57 (240)
253 1n0w_A DNA repair protein RAD5 97.7 5.5E-05 1.9E-09 76.1 8.2 78 461-538 20-133 (243)
254 2ehv_A Hypothetical protein PH 97.7 0.00011 3.8E-09 74.2 10.5 129 461-600 26-206 (251)
255 2eyu_A Twitching motility prot 97.7 2E-05 6.8E-10 80.5 4.9 79 183-261 16-108 (261)
256 2d2e_A SUFC protein; ABC-ATPas 97.7 4.9E-05 1.7E-09 77.2 7.7 29 187-215 24-52 (250)
257 2ghi_A Transport protein; mult 97.7 4E-05 1.4E-09 78.3 7.0 31 187-217 41-71 (260)
258 1v5w_A DMC1, meiotic recombina 97.7 6.7E-05 2.3E-09 80.0 8.9 116 188-303 118-273 (343)
259 2zr9_A Protein RECA, recombina 97.7 3.1E-05 1E-09 82.6 6.1 78 461-538 57-153 (349)
260 1xp8_A RECA protein, recombina 97.7 0.00011 3.9E-09 78.5 10.6 115 188-302 70-209 (366)
261 3nh6_A ATP-binding cassette SU 97.7 3.7E-05 1.3E-09 80.2 6.2 31 187-217 75-105 (306)
262 1xp8_A RECA protein, recombina 97.7 8.9E-05 3.1E-09 79.4 9.3 117 461-577 70-208 (366)
263 1qcs_A N-ethylmaleimide sensit 97.7 0.00054 1.9E-08 67.1 13.9 132 8-141 35-191 (211)
264 2z43_A DNA repair and recombin 97.7 5.4E-05 1.8E-09 80.1 7.2 78 188-265 103-217 (324)
265 1b0u_A Histidine permease; ABC 97.6 4.4E-05 1.5E-09 78.1 6.0 31 187-217 27-57 (262)
266 2cbz_A Multidrug resistance-as 97.6 7.1E-05 2.4E-09 75.3 7.2 31 186-216 25-55 (237)
267 2ihy_A ABC transporter, ATP-bi 97.6 2.2E-05 7.4E-10 81.0 3.5 31 187-217 42-72 (279)
268 2pjz_A Hypothetical protein ST 97.6 8.5E-05 2.9E-09 75.8 7.8 30 186-216 25-54 (263)
269 2zu0_C Probable ATP-dependent 97.6 0.00011 3.6E-09 75.4 8.5 30 187-216 41-70 (267)
270 2w0m_A SSO2452; RECA, SSPF, un 97.6 5.8E-05 2E-09 75.3 6.1 37 461-497 19-58 (235)
271 3jvv_A Twitching mobility prot 97.6 6.2E-05 2.1E-09 80.3 5.8 72 190-261 121-206 (356)
272 3io5_A Recombination and repai 97.6 0.00017 5.9E-09 74.5 8.8 78 188-266 25-126 (333)
273 1u94_A RECA protein, recombina 97.5 0.00018 6.2E-09 76.7 9.3 78 188-265 59-155 (356)
274 4a74_A DNA repair and recombin 97.5 5.4E-05 1.9E-09 75.4 4.9 79 461-539 21-140 (231)
275 1jr3_D DNA polymerase III, del 97.5 0.00059 2E-08 72.6 12.7 157 465-649 18-189 (343)
276 1cr5_A SEC18P (residues 22 - 2 97.5 0.0014 4.7E-08 63.0 13.9 124 11-140 36-186 (189)
277 2pze_A Cystic fibrosis transme 97.5 0.0002 6.7E-09 71.6 8.1 31 187-217 29-59 (229)
278 1qhx_A CPT, protein (chloramph 97.5 0.00027 9.4E-09 67.3 8.8 35 192-226 3-37 (178)
279 1nlf_A Regulatory protein REPA 97.5 0.00025 8.4E-09 73.2 8.9 29 188-216 26-54 (279)
280 1u94_A RECA protein, recombina 97.5 0.00012 4.1E-09 78.1 6.6 117 461-577 59-197 (356)
281 3vaa_A Shikimate kinase, SK; s 97.4 9.4E-05 3.2E-09 72.2 5.0 36 188-223 21-56 (199)
282 3ozx_A RNAse L inhibitor; ATP 97.4 8.8E-05 3E-09 83.7 5.3 29 188-216 290-318 (538)
283 1cr0_A DNA primase/helicase; R 97.4 0.00032 1.1E-08 73.0 9.1 30 187-216 30-59 (296)
284 2yuj_A Ubiquitin fusion degrad 97.4 0.0017 5.7E-08 61.4 12.9 123 10-137 62-186 (190)
285 1zp6_A Hypothetical protein AT 97.4 9E-05 3.1E-09 71.6 4.3 41 188-228 5-45 (191)
286 3qf4_B Uncharacterized ABC tra 97.4 0.00019 6.6E-09 82.3 7.7 32 186-217 375-406 (598)
287 2ewv_A Twitching motility prot 97.4 0.00014 4.7E-09 78.4 5.7 81 181-261 125-219 (372)
288 4a82_A Cystic fibrosis transme 97.4 0.00013 4.6E-09 83.4 5.8 32 186-217 361-392 (578)
289 1zc1_A Ubiquitin fusion degrad 97.3 0.0025 8.4E-08 61.1 13.0 124 9-139 66-196 (208)
290 3f8t_A Predicted ATPase involv 97.3 0.0002 7E-09 77.7 6.2 118 194-330 241-385 (506)
291 3b5x_A Lipid A export ATP-bind 97.3 0.00035 1.2E-08 80.0 8.6 31 186-216 363-393 (582)
292 2dr3_A UPF0273 protein PH0284; 97.3 0.0015 5E-08 65.6 12.1 38 188-225 19-59 (247)
293 2eyu_A Twitching motility prot 97.3 0.0003 1E-08 71.8 6.9 78 457-534 17-108 (261)
294 3thx_B DNA mismatch repair pro 97.3 0.00029 1E-08 83.8 7.7 29 187-215 668-696 (918)
295 1pzn_A RAD51, DNA repair and r 97.3 0.00027 9.2E-09 75.4 6.6 40 461-500 127-175 (349)
296 3b60_A Lipid A export ATP-bind 97.3 0.00024 8.2E-09 81.3 6.6 32 186-217 363-394 (582)
297 1v5w_A DMC1, meiotic recombina 97.3 0.00039 1.3E-08 74.0 7.7 115 461-578 118-272 (343)
298 2z43_A DNA repair and recombin 97.3 0.00024 8.2E-09 75.0 6.0 113 461-576 103-254 (324)
299 3fvq_A Fe(3+) IONS import ATP- 97.3 3.3E-05 1.1E-09 82.1 -0.6 44 456-499 19-66 (359)
300 3gfo_A Cobalt import ATP-bindi 97.3 2E-05 6.9E-10 81.0 -2.4 35 456-490 23-59 (275)
301 3io5_A Recombination and repai 97.2 0.00055 1.9E-08 70.7 8.2 115 461-576 25-168 (333)
302 4g1u_C Hemin import ATP-bindin 97.2 2.3E-05 7.9E-10 80.3 -2.1 34 456-489 26-61 (266)
303 3qf4_A ABC transporter, ATP-bi 97.2 0.00042 1.4E-08 79.3 7.9 32 186-217 363-394 (587)
304 2i1q_A DNA repair and recombin 97.2 0.00033 1.1E-08 73.9 6.5 28 188-215 94-121 (322)
305 3lda_A DNA repair protein RAD5 97.2 0.00029 9.9E-09 76.3 6.0 118 461-579 174-327 (400)
306 1htw_A HI0065; nucleotide-bind 97.2 0.00024 8.3E-09 66.5 4.5 31 186-216 27-57 (158)
307 1qhx_A CPT, protein (chloramph 97.2 0.00053 1.8E-08 65.2 7.0 34 466-499 4-37 (178)
308 1z6t_A APAF-1, apoptotic prote 97.2 0.0048 1.7E-07 70.6 16.4 47 157-214 123-169 (591)
309 1kag_A SKI, shikimate kinase I 97.2 0.00029 9.8E-09 66.8 4.8 30 192-221 4-33 (173)
310 3vaa_A Shikimate kinase, SK; s 97.1 0.00028 9.6E-09 68.8 4.6 33 464-496 24-56 (199)
311 2i3b_A HCR-ntpase, human cance 97.1 0.00055 1.9E-08 66.1 6.6 133 468-617 4-186 (189)
312 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00012 4.1E-09 77.5 1.9 73 189-261 168-250 (330)
313 3trf_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 67.1 4.9 32 192-223 5-36 (185)
314 2p5t_B PEZT; postsegregational 97.1 0.00085 2.9E-08 68.0 8.0 40 189-228 29-68 (253)
315 2rhm_A Putative kinase; P-loop 97.1 0.0004 1.4E-08 66.9 5.2 33 190-222 3-35 (193)
316 3dm5_A SRP54, signal recogniti 97.1 0.0041 1.4E-07 67.8 13.6 71 465-535 100-193 (443)
317 3bk7_A ABC transporter ATP-bin 97.1 0.00017 5.8E-09 82.5 2.7 28 189-216 379-406 (607)
318 4eun_A Thermoresistant glucoki 97.1 0.00042 1.4E-08 67.6 5.2 37 190-228 27-63 (200)
319 3jvv_A Twitching mobility prot 97.1 0.0007 2.4E-08 72.1 7.3 98 465-583 123-234 (356)
320 1y63_A LMAJ004144AAA protein; 97.1 0.0003 1E-08 67.6 4.0 33 190-222 8-41 (184)
321 1zp6_A Hypothetical protein AT 97.1 0.00024 8E-09 68.6 3.1 38 464-501 8-45 (191)
322 3uie_A Adenylyl-sulfate kinase 97.1 0.00045 1.5E-08 67.3 5.2 39 190-228 23-64 (200)
323 1yqt_A RNAse L inhibitor; ATP- 97.1 0.00056 1.9E-08 77.3 6.5 28 189-216 309-336 (538)
324 3j16_B RLI1P; ribosome recycli 97.0 0.00071 2.4E-08 77.2 7.4 24 193-216 379-402 (608)
325 2orw_A Thymidine kinase; TMTK, 97.0 0.00026 8.9E-09 68.1 3.2 21 468-488 6-26 (184)
326 1z6t_A APAF-1, apoptotic prote 97.0 0.0053 1.8E-07 70.3 14.7 165 431-637 124-321 (591)
327 1knq_A Gluconate kinase; ALFA/ 97.0 0.00052 1.8E-08 65.2 5.2 31 191-221 7-37 (175)
328 1z47_A CYSA, putative ABC-tran 97.0 9.6E-05 3.3E-09 78.5 -0.1 34 457-490 31-66 (355)
329 1nlf_A Regulatory protein REPA 97.0 0.00064 2.2E-08 70.1 6.1 29 461-489 26-54 (279)
330 2r6a_A DNAB helicase, replicat 97.0 0.0014 4.9E-08 72.4 9.2 38 188-225 199-240 (454)
331 3thx_A DNA mismatch repair pro 97.0 0.00091 3.1E-08 79.8 7.9 26 189-214 659-684 (934)
332 3rlf_A Maltose/maltodextrin im 97.0 0.00054 1.8E-08 73.3 5.4 34 457-490 19-54 (381)
333 2yl4_A ATP-binding cassette SU 97.0 0.00061 2.1E-08 78.2 6.2 32 186-217 364-395 (595)
334 3trf_A Shikimate kinase, SK; a 97.0 0.00048 1.6E-08 66.0 4.5 32 465-496 5-36 (185)
335 3iij_A Coilin-interacting nucl 97.0 0.00067 2.3E-08 64.8 5.4 33 190-222 9-41 (180)
336 2orw_A Thymidine kinase; TMTK, 97.0 0.0013 4.5E-08 63.1 7.3 24 192-215 3-26 (184)
337 3kb2_A SPBC2 prophage-derived 96.9 0.00049 1.7E-08 64.9 4.2 31 194-224 3-33 (173)
338 1via_A Shikimate kinase; struc 96.9 0.00062 2.1E-08 64.7 4.7 29 194-222 6-34 (175)
339 3tr0_A Guanylate kinase, GMP k 96.9 0.00052 1.8E-08 66.9 4.2 29 189-217 4-32 (205)
340 1z6g_A Guanylate kinase; struc 96.9 0.00046 1.6E-08 68.3 3.8 32 186-217 17-48 (218)
341 1vma_A Cell division protein F 96.9 0.0025 8.7E-08 66.3 9.5 73 189-261 101-196 (306)
342 3sfz_A APAF-1, apoptotic pepti 96.9 0.012 4.2E-07 73.4 17.5 168 157-361 123-321 (1249)
343 4f4c_A Multidrug resistance pr 96.9 0.0006 2E-08 85.3 5.4 32 186-217 438-469 (1321)
344 4gp7_A Metallophosphoesterase; 96.9 0.00047 1.6E-08 65.4 3.5 20 465-484 9-28 (171)
345 2b8t_A Thymidine kinase; deoxy 96.9 0.0018 6.1E-08 64.1 7.8 73 191-264 11-102 (223)
346 3tui_C Methionine import ATP-b 96.9 0.00092 3.1E-08 71.0 6.0 43 457-499 44-90 (366)
347 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.0023 8E-08 65.1 8.9 38 192-229 4-44 (260)
348 3nwj_A ATSK2; P loop, shikimat 96.9 0.00056 1.9E-08 69.1 4.2 32 192-223 48-79 (250)
349 2ius_A DNA translocase FTSK; n 96.9 0.0046 1.6E-07 68.7 11.8 76 251-336 296-374 (512)
350 3cm0_A Adenylate kinase; ATP-b 96.9 0.00066 2.3E-08 65.1 4.4 30 192-221 4-33 (186)
351 2ewv_A Twitching motility prot 96.9 0.00093 3.2E-08 71.8 5.9 79 456-534 127-219 (372)
352 1kag_A SKI, shikimate kinase I 96.8 0.00077 2.6E-08 63.7 4.7 29 466-494 5-33 (173)
353 2rhm_A Putative kinase; P-loop 96.8 0.0007 2.4E-08 65.2 4.4 31 465-495 5-35 (193)
354 1gvn_B Zeta; postsegregational 96.8 0.0016 5.3E-08 67.4 7.3 39 190-228 31-69 (287)
355 4f4c_A Multidrug resistance pr 96.8 0.001 3.5E-08 83.2 6.9 31 186-216 1099-1129(1321)
356 2pez_A Bifunctional 3'-phospho 96.8 0.00099 3.4E-08 63.5 5.4 37 191-227 4-43 (179)
357 1znw_A Guanylate kinase, GMP k 96.8 0.00062 2.1E-08 66.8 4.0 31 187-217 15-45 (207)
358 2iut_A DNA translocase FTSK; n 96.8 0.0047 1.6E-07 69.2 11.4 75 525-612 344-420 (574)
359 2v9p_A Replication protein E1; 96.8 0.00071 2.4E-08 70.3 4.5 33 186-218 120-152 (305)
360 2iyv_A Shikimate kinase, SK; t 96.8 0.00087 3E-08 64.1 4.7 30 193-222 3-32 (184)
361 1zuh_A Shikimate kinase; alpha 96.8 0.00093 3.2E-08 62.9 4.8 32 192-223 7-38 (168)
362 1via_A Shikimate kinase; struc 96.8 0.00079 2.7E-08 64.0 4.3 29 467-495 6-34 (175)
363 2ius_A DNA translocase FTSK; n 96.8 0.0048 1.6E-07 68.6 11.1 76 525-613 297-375 (512)
364 3kb2_A SPBC2 prophage-derived 96.8 0.00078 2.7E-08 63.5 4.2 29 468-496 4-32 (173)
365 3t61_A Gluconokinase; PSI-biol 96.8 0.00096 3.3E-08 65.0 5.0 31 192-222 18-48 (202)
366 2p5t_B PEZT; postsegregational 96.8 0.0018 6.1E-08 65.6 7.1 37 465-501 32-68 (253)
367 3umf_A Adenylate kinase; rossm 96.8 0.0011 3.9E-08 65.3 5.3 39 189-229 26-64 (217)
368 3sfz_A APAF-1, apoptotic pepti 96.8 0.01 3.5E-07 74.1 15.3 166 432-637 125-321 (1249)
369 2c95_A Adenylate kinase 1; tra 96.8 0.0011 3.7E-08 64.0 5.0 33 191-223 8-40 (196)
370 1aky_A Adenylate kinase; ATP:A 96.8 0.0011 3.8E-08 65.5 5.2 32 191-222 3-34 (220)
371 2ze6_A Isopentenyl transferase 96.8 0.00081 2.8E-08 68.2 4.2 32 194-225 3-34 (253)
372 1tev_A UMP-CMP kinase; ploop, 96.7 0.0011 3.9E-08 63.7 5.0 31 192-222 3-33 (196)
373 2cdn_A Adenylate kinase; phosp 96.7 0.0012 4.2E-08 64.2 5.1 33 191-223 19-51 (201)
374 2dr3_A UPF0273 protein PH0284; 96.7 0.008 2.7E-07 60.1 11.2 38 461-498 19-59 (247)
375 3iij_A Coilin-interacting nucl 96.7 0.0013 4.4E-08 62.8 5.0 32 465-496 11-42 (180)
376 2jeo_A Uridine-cytidine kinase 96.7 0.00094 3.2E-08 67.4 4.2 32 187-218 20-51 (245)
377 1u0j_A DNA replication protein 96.7 0.00097 3.3E-08 67.5 4.2 29 190-218 102-130 (267)
378 2j41_A Guanylate kinase; GMP, 96.7 0.00084 2.9E-08 65.5 3.6 28 189-216 3-30 (207)
379 3upu_A ATP-dependent DNA helic 96.7 0.0038 1.3E-07 69.2 9.3 23 194-216 47-69 (459)
380 1wb9_A DNA mismatch repair pro 96.7 0.003 1E-07 74.4 8.9 26 190-215 605-630 (800)
381 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.7E-08 63.4 4.2 27 191-217 4-30 (180)
382 1g29_1 MALK, maltose transport 96.7 0.0012 4.2E-08 70.6 5.0 34 457-490 19-54 (372)
383 2zts_A Putative uncharacterize 96.7 0.0029 1E-07 63.4 7.6 37 188-224 26-66 (251)
384 3dm5_A SRP54, signal recogniti 96.7 0.012 4.1E-07 64.1 12.7 71 191-261 99-192 (443)
385 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.00097 3.3E-08 70.4 4.1 73 463-535 169-251 (330)
386 2i1q_A DNA repair and recombin 96.7 0.0011 3.6E-08 69.9 4.4 113 461-576 94-255 (322)
387 1y63_A LMAJ004144AAA protein; 96.7 0.00094 3.2E-08 64.1 3.6 30 466-495 11-41 (184)
388 1e6c_A Shikimate kinase; phosp 96.7 0.0013 4.6E-08 62.0 4.7 30 193-222 3-32 (173)
389 1kht_A Adenylate kinase; phosp 96.6 0.0012 4E-08 63.5 4.3 26 192-217 3-28 (192)
390 3e1s_A Exodeoxyribonuclease V, 96.6 0.0021 7.2E-08 73.1 7.0 32 192-223 204-238 (574)
391 3lw7_A Adenylate kinase relate 96.6 0.0013 4.3E-08 62.1 4.5 29 194-223 3-31 (179)
392 2a5y_B CED-4; apoptosis; HET: 96.6 0.018 6E-07 65.3 14.7 144 161-339 131-306 (549)
393 1ly1_A Polynucleotide kinase; 96.6 0.001 3.5E-08 63.2 3.8 26 193-218 3-29 (181)
394 1zd8_A GTP:AMP phosphotransfer 96.6 0.0013 4.3E-08 65.5 4.6 32 191-222 6-37 (227)
395 2vli_A Antibiotic resistance p 96.6 0.00094 3.2E-08 63.7 3.5 30 192-221 5-34 (183)
396 2iut_A DNA translocase FTSK; n 96.6 0.013 4.5E-07 65.6 13.1 73 253-335 345-419 (574)
397 2ze6_A Isopentenyl transferase 96.6 0.0012 3.9E-08 67.1 4.3 31 468-498 4-34 (253)
398 3crm_A TRNA delta(2)-isopenten 96.6 0.004 1.4E-07 64.9 8.4 35 193-227 6-40 (323)
399 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5.2E-08 64.7 5.0 29 193-221 6-34 (227)
400 3tlx_A Adenylate kinase 2; str 96.6 0.0017 5.8E-08 65.4 5.3 34 190-223 27-60 (243)
401 2iyv_A Shikimate kinase, SK; t 96.6 0.0013 4.5E-08 62.8 4.3 29 467-495 4-32 (184)
402 1lvg_A Guanylate kinase, GMP k 96.6 0.0011 3.8E-08 64.5 3.7 27 191-217 3-29 (198)
403 3g5u_A MCG1178, multidrug resi 96.6 0.0014 4.7E-08 81.8 5.5 30 187-216 1054-1083(1284)
404 2bwj_A Adenylate kinase 5; pho 96.6 0.0016 5.3E-08 63.1 4.8 31 192-222 12-42 (199)
405 1mv5_A LMRA, multidrug resista 96.6 0.00056 1.9E-08 68.9 1.6 32 186-217 22-53 (243)
406 3c8u_A Fructokinase; YP_612366 96.6 0.0012 4.2E-08 64.7 4.0 28 190-217 20-47 (208)
407 1qf9_A UMP/CMP kinase, protein 96.6 0.002 6.7E-08 61.9 5.3 31 192-222 6-36 (194)
408 1zuh_A Shikimate kinase; alpha 96.6 0.0015 5.1E-08 61.5 4.3 31 466-496 8-38 (168)
409 4eun_A Thermoresistant glucoki 96.5 0.0016 5.6E-08 63.3 4.6 35 465-501 29-63 (200)
410 4aby_A DNA repair protein RECN 96.5 0.0018 6.1E-08 70.8 5.4 30 187-217 56-85 (415)
411 4e22_A Cytidylate kinase; P-lo 96.5 0.0019 6.5E-08 65.4 5.2 32 190-221 25-56 (252)
412 1ukz_A Uridylate kinase; trans 96.5 0.0019 6.6E-08 62.8 5.1 33 191-223 14-46 (203)
413 2q6t_A DNAB replication FORK h 96.5 0.0049 1.7E-07 68.0 8.9 38 188-225 196-237 (444)
414 3sr0_A Adenylate kinase; phosp 96.5 0.0017 5.9E-08 63.5 4.7 34 194-229 2-35 (206)
415 1ak2_A Adenylate kinase isoenz 96.5 0.002 6.8E-08 64.4 5.3 32 191-222 15-46 (233)
416 2oap_1 GSPE-2, type II secreti 96.5 0.0012 4.2E-08 73.8 4.1 73 189-261 257-343 (511)
417 3g5u_A MCG1178, multidrug resi 96.5 0.0021 7.3E-08 80.1 6.6 32 186-217 410-441 (1284)
418 2bbw_A Adenylate kinase 4, AK4 96.5 0.0016 5.6E-08 65.6 4.6 31 191-221 26-56 (246)
419 3dl0_A Adenylate kinase; phosp 96.5 0.0017 5.7E-08 64.0 4.6 30 194-223 2-31 (216)
420 1zak_A Adenylate kinase; ATP:A 96.5 0.0014 4.8E-08 64.8 4.1 31 191-221 4-34 (222)
421 3fb4_A Adenylate kinase; psych 96.5 0.0017 5.8E-08 63.9 4.6 30 194-223 2-31 (216)
422 1tf7_A KAIC; homohexamer, hexa 96.5 0.0057 2E-07 69.0 9.5 110 188-304 277-417 (525)
423 3umf_A Adenylate kinase; rossm 96.5 0.0015 5.2E-08 64.3 4.1 39 463-503 27-65 (217)
424 3kl4_A SRP54, signal recogniti 96.5 0.0089 3E-07 65.1 10.5 72 191-262 96-190 (433)
425 3bh0_A DNAB-like replicative h 96.5 0.0082 2.8E-07 62.9 10.0 37 188-224 64-103 (315)
426 3cm0_A Adenylate kinase; ATP-b 96.5 0.0015 5.3E-08 62.4 4.0 28 467-494 6-33 (186)
427 2pt5_A Shikimate kinase, SK; a 96.5 0.002 6.8E-08 60.5 4.7 29 194-222 2-30 (168)
428 3asz_A Uridine kinase; cytidin 96.5 0.0016 5.4E-08 63.8 4.1 28 190-217 4-31 (211)
429 2o8b_B DNA mismatch repair pro 96.5 0.0061 2.1E-07 73.7 10.0 23 192-215 789-811 (1022)
430 3lw7_A Adenylate kinase relate 96.5 0.0016 5.6E-08 61.2 4.1 28 468-496 4-31 (179)
431 3sr0_A Adenylate kinase; phosp 96.5 0.0017 5.9E-08 63.5 4.2 33 468-502 3-35 (206)
432 1e6c_A Shikimate kinase; phosp 96.5 0.0018 6.2E-08 61.1 4.3 29 467-495 4-32 (173)
433 1knq_A Gluconate kinase; ALFA/ 96.5 0.0019 6.6E-08 61.1 4.4 33 467-501 10-42 (175)
434 3lnc_A Guanylate kinase, GMP k 96.5 0.00085 2.9E-08 67.0 1.9 32 186-217 21-53 (231)
435 1aky_A Adenylate kinase; ATP:A 96.5 0.002 6.7E-08 63.7 4.6 31 466-496 5-35 (220)
436 3be4_A Adenylate kinase; malar 96.5 0.0019 6.7E-08 63.7 4.5 32 192-223 5-36 (217)
437 1s96_A Guanylate kinase, GMP k 96.5 0.0017 5.8E-08 64.2 4.1 29 189-217 13-41 (219)
438 2cdn_A Adenylate kinase; phosp 96.4 0.0022 7.4E-08 62.4 4.8 30 467-496 22-51 (201)
439 3t61_A Gluconokinase; PSI-biol 96.4 0.0022 7.4E-08 62.4 4.8 30 466-495 19-48 (202)
440 3a00_A Guanylate kinase, GMP k 96.4 0.0015 5.2E-08 62.7 3.6 25 193-217 2-26 (186)
441 3tau_A Guanylate kinase, GMP k 96.4 0.0016 5.5E-08 63.8 3.8 29 190-218 6-34 (208)
442 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0045 1.5E-07 62.9 7.2 36 467-502 6-44 (260)
443 2c95_A Adenylate kinase 1; tra 96.4 0.0019 6.6E-08 62.2 4.3 31 466-496 10-40 (196)
444 2px0_A Flagellar biosynthesis 96.4 0.015 5.1E-07 60.2 11.2 25 465-489 105-129 (296)
445 1p9r_A General secretion pathw 96.4 0.0031 1.1E-07 68.6 6.2 71 191-261 166-246 (418)
446 2b8t_A Thymidine kinase; deoxy 96.4 0.0034 1.2E-07 62.0 5.9 68 468-536 15-101 (223)
447 2ga8_A Hypothetical 39.9 kDa p 96.4 0.0014 4.8E-08 69.0 3.2 51 162-221 3-53 (359)
448 2px0_A Flagellar biosynthesis 96.4 0.013 4.6E-07 60.6 10.6 36 190-225 103-142 (296)
449 1tev_A UMP-CMP kinase; ploop, 96.4 0.0021 7.3E-08 61.8 4.3 29 467-495 5-33 (196)
450 3upu_A ATP-dependent DNA helic 96.4 0.0069 2.4E-07 67.1 9.0 96 467-579 47-166 (459)
451 2iw3_A Elongation factor 3A; a 96.4 0.0043 1.5E-07 73.9 7.6 31 186-216 693-723 (986)
452 2if2_A Dephospho-COA kinase; a 96.4 0.0022 7.4E-08 62.5 4.3 28 194-222 3-30 (204)
453 3be4_A Adenylate kinase; malar 96.4 0.0021 7.3E-08 63.3 4.3 30 467-496 7-36 (217)
454 1jr3_D DNA polymerase III, del 96.4 0.033 1.1E-06 58.8 13.9 142 192-359 18-176 (343)
455 1gvn_B Zeta; postsegregational 96.4 0.0021 7.1E-08 66.5 4.3 37 465-501 33-69 (287)
456 3r20_A Cytidylate kinase; stru 96.4 0.0028 9.6E-08 63.1 5.0 31 192-222 9-39 (233)
457 1kht_A Adenylate kinase; phosp 96.4 0.0019 6.3E-08 62.0 3.7 24 467-490 5-28 (192)
458 2jaq_A Deoxyguanosine kinase; 96.3 0.0024 8.1E-08 62.0 4.4 28 194-221 2-29 (205)
459 1g5t_A COB(I)alamin adenosyltr 96.3 0.013 4.3E-07 56.4 9.3 101 467-580 30-163 (196)
460 3b9q_A Chloroplast SRP recepto 96.3 0.0029 9.8E-08 65.8 5.2 30 187-216 95-124 (302)
461 3ux8_A Excinuclease ABC, A sub 96.3 0.0032 1.1E-07 73.3 6.2 27 186-212 342-368 (670)
462 1zd8_A GTP:AMP phosphotransfer 96.3 0.0022 7.6E-08 63.7 4.2 31 466-496 8-38 (227)
463 2bdt_A BH3686; alpha-beta prot 96.3 0.0024 8.4E-08 61.3 4.3 35 193-228 3-37 (189)
464 2pt5_A Shikimate kinase, SK; a 96.3 0.0025 8.6E-08 59.8 4.3 28 468-495 3-30 (168)
465 3e70_C DPA, signal recognition 96.3 0.016 5.5E-07 60.8 10.9 28 189-216 126-153 (328)
466 3dl0_A Adenylate kinase; phosp 96.3 0.0023 7.8E-08 62.9 4.2 29 468-496 3-31 (216)
467 2vli_A Antibiotic resistance p 96.3 0.0017 6E-08 61.8 3.2 28 467-494 7-34 (183)
468 1jjv_A Dephospho-COA kinase; P 96.3 0.0022 7.4E-08 62.6 3.9 27 194-221 4-30 (206)
469 3fb4_A Adenylate kinase; psych 96.3 0.0025 8.4E-08 62.7 4.2 29 468-496 3-31 (216)
470 3ney_A 55 kDa erythrocyte memb 96.3 0.0026 8.9E-08 61.6 4.3 31 187-217 14-44 (197)
471 1vma_A Cell division protein F 96.3 0.0065 2.2E-07 63.2 7.6 70 464-534 103-196 (306)
472 1qf9_A UMP/CMP kinase, protein 96.3 0.0027 9.3E-08 60.9 4.4 31 466-496 7-37 (194)
473 2pbr_A DTMP kinase, thymidylat 96.3 0.0032 1.1E-07 60.4 4.9 31 194-224 2-35 (195)
474 2r8r_A Sensor protein; KDPD, P 96.3 0.045 1.6E-06 53.7 13.1 30 467-496 8-40 (228)
475 2qor_A Guanylate kinase; phosp 96.3 0.0025 8.5E-08 62.2 4.1 30 189-218 9-38 (204)
476 1e4v_A Adenylate kinase; trans 96.3 0.0028 9.5E-08 62.3 4.5 30 194-223 2-31 (214)
477 2fz4_A DNA repair protein RAD2 96.3 0.016 5.3E-07 58.0 10.1 33 193-225 109-141 (237)
478 2bwj_A Adenylate kinase 5; pho 96.3 0.0025 8.5E-08 61.6 4.1 30 466-495 13-42 (199)
479 2v54_A DTMP kinase, thymidylat 96.3 0.0028 9.6E-08 61.5 4.4 34 191-224 3-37 (204)
480 1ak2_A Adenylate kinase isoenz 96.3 0.003 1E-07 63.0 4.7 31 466-496 17-47 (233)
481 3uie_A Adenylyl-sulfate kinase 96.3 0.0025 8.5E-08 62.0 4.0 37 465-501 25-64 (200)
482 2bbs_A Cystic fibrosis transme 96.3 0.0011 3.7E-08 68.5 1.5 32 186-217 58-89 (290)
483 2qt1_A Nicotinamide riboside k 96.2 0.0025 8.5E-08 62.3 3.9 28 189-216 18-45 (207)
484 1m7g_A Adenylylsulfate kinase; 96.2 0.0029 1E-07 62.0 4.4 40 189-228 22-65 (211)
485 1ly1_A Polynucleotide kinase; 96.2 0.0019 6.3E-08 61.4 2.8 21 467-487 4-24 (181)
486 1cke_A CK, MSSA, protein (cyti 96.2 0.0028 9.7E-08 62.7 4.3 28 467-494 7-34 (227)
487 2xb4_A Adenylate kinase; ATP-b 96.2 0.0032 1.1E-07 62.4 4.6 28 194-221 2-29 (223)
488 2r6a_A DNAB helicase, replicat 96.2 0.0056 1.9E-07 67.7 7.0 38 461-498 199-240 (454)
489 3crm_A TRNA delta(2)-isopenten 96.2 0.0021 7.2E-08 67.1 3.2 36 466-501 6-41 (323)
490 1zak_A Adenylate kinase; ATP:A 96.2 0.0025 8.6E-08 63.0 3.7 29 466-494 6-34 (222)
491 3e1s_A Exodeoxyribonuclease V, 96.2 0.0042 1.4E-07 70.6 5.9 97 466-579 205-317 (574)
492 2yvu_A Probable adenylyl-sulfa 96.2 0.0047 1.6E-07 59.1 5.5 36 190-225 11-49 (186)
493 2plr_A DTMP kinase, probable t 96.2 0.0029 1E-07 61.7 4.1 27 192-218 4-30 (213)
494 3thx_B DNA mismatch repair pro 96.2 0.0052 1.8E-07 73.2 6.9 108 465-584 673-800 (918)
495 2z0h_A DTMP kinase, thymidylat 96.2 0.004 1.4E-07 60.0 5.0 31 194-224 2-35 (197)
496 2og2_A Putative signal recogni 96.2 0.0037 1.3E-07 66.4 5.1 30 187-216 152-181 (359)
497 4a1f_A DNAB helicase, replicat 96.2 0.028 9.6E-07 59.1 11.8 47 179-225 32-82 (338)
498 1htw_A HI0065; nucleotide-bind 96.2 0.0027 9.4E-08 59.2 3.6 25 465-489 33-57 (158)
499 2pez_A Bifunctional 3'-phospho 96.2 0.0029 1E-07 60.1 3.9 34 467-500 7-43 (179)
500 1nks_A Adenylate kinase; therm 96.2 0.0022 7.4E-08 61.6 3.0 24 194-217 3-26 (194)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1e-125 Score=1102.37 Aligned_cols=730 Identities=81% Similarity=1.297 Sum_probs=600.1
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEG 80 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (757)
|++|||.+||+|+|+|++++.+++|++++++++.+.|+||+.+|+|+|+++||.|+|+++..++.+++|++.|...+...
T Consensus 46 ~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~~v~l~p~~~~~~~ 125 (806)
T 3cf2_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (806)
T ss_dssp HHHTTCCSSCEEEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCSBEEEEEBTTTSTT
T ss_pred HHHcCCCCCCEEEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCCEEEEeccccchhc
Confidence 78999999999999999988999999999999999999999999999999999999999877889999999999887777
Q ss_pred cchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCcccc-cccCCCCCccc
Q 004384 81 VTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDD 159 (757)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (757)
..+..+..+++.+|....+||..||.|.+.+.++.+.|+|++++|.++++|+++|.+.+.+.+..... ....++++|+|
T Consensus 126 ~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~d 205 (806)
T 3cf2_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205 (806)
T ss_dssp CCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEEECCTTSBCCBCSCCBCCCTTSCCSSSCCGGG
T ss_pred cchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCeEECCCcEEEEeccccCcccccccCCCCChhh
Confidence 77778888999999877899999999999888888999999999999999999999998887765432 33567899999
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHH
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN 239 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~ 239 (757)
|||+++++++|++++.+|++||++|..+++.++++||||||||||||+||+++|++++.+++.++++++.+++.|+++..
T Consensus 206 IgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~ 285 (806)
T 3cf2_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (806)
T ss_dssp CCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcce
Q 004384 240 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDR 319 (757)
Q Consensus 240 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~ 319 (757)
++.+|+.|....||||||||+|.++++++...++..++++.+|+.+|+++..+.+|+||++||+++.+|++++|++||++
T Consensus 286 lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~ 365 (806)
T 3cf2_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp HHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCE
T ss_pred HHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccce
Confidence 99999999999999999999999999988777788899999999999999988999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhc
Q 004384 320 EIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM 399 (757)
Q Consensus 320 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (757)
+|+++.|+..+|.+||+.+++++.+..++++..+|..|+||+++|+..+|++|++.++++..............+.....
T Consensus 366 ~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~ 445 (806)
T 3cf2_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSL 445 (806)
T ss_dssp EEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHC
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccccccccchhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999998876655555545555556678
Q ss_pred ccchhhhhhhhccCCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChh
Q 004384 400 AVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 479 (757)
Q Consensus 400 ~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT 479 (757)
.++.+||..++....|+..++...+.|+++|++++|++++|+.|.+.+.+|+++++.|.++++.+++|+|||||||||||
T Consensus 446 ~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT 525 (806)
T 3cf2_A 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp EECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHH
T ss_pred eeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCch
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 480 LLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 480 ~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
++|+++|++++.+|+.+++++++++|+|+++++++.+|+.|+...||||||||||++++.|+.+.++.++..++++++||
T Consensus 526 ~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL 605 (806)
T 3cf2_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp HHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHH
T ss_pred HHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998665555667889999999
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGA 639 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~ 639 (757)
++|||+....+|+||||||+|+.||+|++||||||++||||+||.++|.+||+.++++.++..++|+..||+.|+||||+
T Consensus 606 ~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGa 685 (806)
T 3cf2_A 606 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp HHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred HHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 004384 640 DITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 640 di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 719 (757)
||.++|++|++.|+++.+................+. ....+..+.|+++||++|+++++||+|++++++|++|.++|.+
T Consensus 686 di~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 686 DLTEICQRACKLAIRESIESEIRRERERQTNPSAME-VEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp CHHHHHHHHHHHHHHHHHC------------------------CCC----CCTTTC---------------CCCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccc-cccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999987654432222211111111 1112345789999999999999999999999999999999999
Q ss_pred ccCCCcccccccC
Q 004384 720 SRGIGSEFRFAEA 732 (757)
Q Consensus 720 ~~~~~~~~~~~~~ 732 (757)
+|++|. |.|...
T Consensus 765 ~~~~g~-~~~~~~ 776 (806)
T 3cf2_A 765 SRGFGS-FRFPSG 776 (806)
T ss_dssp -------------
T ss_pred ccCccc-cccCCC
Confidence 999997 777654
No 2
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.6e-99 Score=901.19 Aligned_cols=731 Identities=81% Similarity=1.296 Sum_probs=610.5
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEG 80 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (757)
|++|||++||+|+|+|++++.++|.+||++.++.+.|+|++.+|.|+|+++||.|+|+++..++.+++|++.|..+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (806)
T 1ypw_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (806)
T ss_dssp HHHHTCCTTCEEEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCSEEEEEECTTTSSS
T ss_pred HHHcCCCCCCEEEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCcEEEEeCCccchhh
Confidence 68899999999999999877889999998889999999999999999999999999999867889999999998877766
Q ss_pred cchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCcccc-cccCCCCCccc
Q 004384 81 VTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDD 159 (757)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (757)
+.+..++.+++++|....+||.+|+++.+...++.+.|+|++++|.++++++++|.+.+.+.+..+.. ....+.++|+|
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~~~t~~~~~~~~~~~~~~~~~~~~v~~~d 205 (806)
T 1ypw_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205 (806)
T ss_dssp CCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCCSSSEEEECSCCCCCCTTSCCSSSCCGGG
T ss_pred cccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceecCCeEEEecCccccchhhhcccCCCCHHH
Confidence 66666677899999777899999999999888888999999999999999999999998877765432 23467889999
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHH
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN 239 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~ 239 (757)
|+|+++++++|++.+.+|+.+|++|+++++.++.+|||+||||||||||++++|+.++.+++.+++.++.+.+.++.+..
T Consensus 206 i~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~ 285 (806)
T 1ypw_A 206 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (806)
T ss_dssp CCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHH
T ss_pred hCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcce
Q 004384 240 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDR 319 (757)
Q Consensus 240 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~ 319 (757)
++.+|+.+..+.|+++|+||+|+++++++....+...++..+|+.++++...+..+++|++||+++.+++++++++||+.
T Consensus 286 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~ 365 (806)
T 1ypw_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (806)
T ss_dssp HHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCE
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhccccccc
Confidence 99999999999999999999999999988777888899999999999999888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhc
Q 004384 320 EIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM 399 (757)
Q Consensus 320 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (757)
.+.++.|+.++|.+|++.+.+++.+..+.++..++..++||+++++..++.+++..++++...........+........
T Consensus 366 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~ 445 (806)
T 1ypw_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSL 445 (806)
T ss_dssp EECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTC
T ss_pred ccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhh
Confidence 99999999999999999999999888888899999999999999999999999998888766555544444444445566
Q ss_pred ccchhhhhhhhccCCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChh
Q 004384 400 AVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKT 479 (757)
Q Consensus 400 ~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT 479 (757)
.++.+++..++....|+..++.....+.+.|++++|++++|+.|.+.+.++..++..+..+++.++.++||+||||||||
T Consensus 446 ~v~~~d~~~al~~~~~s~~~~~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT 525 (806)
T 1ypw_A 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT 525 (806)
T ss_dssp CCCTTHHHHHHHHSCCCCCCCCCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHH
T ss_pred hhhhhhhhccccccCchhhhhhcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHH
Confidence 78888999999888888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 480 LLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 480 ~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+...|||+||||||+++..|+...++..+...+++++||
T Consensus 526 ~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL 605 (806)
T 1ypw_A 526 LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQIL 605 (806)
T ss_dssp HHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886543333456789999999
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGA 639 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~ 639 (757)
++||++....+++||+|||+|+.||+|++|||||++.|+||+|+.++|.+||+.++++.++..++++..+++.++||||+
T Consensus 606 ~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sga 685 (806)
T 1ypw_A 606 TEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685 (806)
T ss_dssp TTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCH
T ss_pred HHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 004384 640 DITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 640 di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 719 (757)
||.++|++|++.|+++.+................++. ...+..+.|+++||++|++.++||++++++++|++|.++|.+
T Consensus 686 di~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~ 764 (806)
T 1ypw_A 686 DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEV-EEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp HHHHHHHHHHHHHHSCC-------------------------CCTTTTTTSSCCCCCC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccc-ccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998876543222111111111111 112335689999999999999999999999999999999999
Q ss_pred ccCCCcccccccCC
Q 004384 720 SRGIGSEFRFAEAG 733 (757)
Q Consensus 720 ~~~~~~~~~~~~~~ 733 (757)
++++|. |.|.+.+
T Consensus 765 ~~~~g~-~~~~~~~ 777 (806)
T 1ypw_A 765 SRGFGS-FRFPSGN 777 (806)
T ss_dssp --------------
T ss_pred hccCCc-eecCCcc
Confidence 999997 8886553
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-57 Score=487.16 Aligned_cols=275 Identities=39% Similarity=0.690 Sum_probs=249.4
Q ss_pred CCCCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc
Q 004384 413 SNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN 492 (757)
Q Consensus 413 ~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~ 492 (757)
..|........+.|+++|+||+|++++|+.|++.+.+|+.+|+.|..+|+++++|+|||||||||||++|+++|++++.+
T Consensus 130 ~~~~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 130 ADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CSCCTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred cCchhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 34555666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEE
Q 004384 493 FISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVF 572 (757)
Q Consensus 493 ~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~ 572 (757)
|+.++++++.++|+|++++.++.+|+.|+..+||||||||||+++++|+.+.++.+....+++++||++|||+....+|+
T Consensus 210 f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 210 FIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred ceEEEhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 99999999999999999999999999999999999999999999999877654444567889999999999999999999
Q ss_pred EEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 573 IIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 573 vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a 652 (757)
||||||+|+.||||++||||||+.|+||+||.++|.+||+.++++.++..++|+..+|+.|+|||||||.++|++|++.|
T Consensus 290 vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~A 369 (405)
T 4b4t_J 290 IIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYA 369 (405)
T ss_dssp EEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHH
T ss_pred EEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHH
Q 004384 653 IRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAF 713 (757)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~ 713 (757)
+++. ...|+++||+.|++++.++..+..+..++.|
T Consensus 370 ir~~--------------------------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 370 LRER--------------------------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp HHTT--------------------------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred HHcC--------------------------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 9864 2379999999999988665555555555555
No 4
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=6.8e-55 Score=488.53 Aligned_cols=439 Identities=79% Similarity=1.301 Sum_probs=385.0
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEG 80 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (757)
|++||+++||+|.|+|+++++|+||+||.++++++.|+||+.+|+|+|+++||+|+|+++..++.+++|++.|+...+..
T Consensus 46 ~~~l~~~~gd~v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a~~v~~~~~~~av~a 125 (489)
T 3hu3_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (489)
T ss_dssp HHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGSSS
T ss_pred HHHcCCCCCCEEEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCccCEEEEcCCCccccc
Confidence 68899999999999999988999999999889999999999999999999999999999877999999999999887766
Q ss_pred cchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCcccc-cccCCCCCccc
Q 004384 81 VTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKRED-EDRLDEVGYDD 159 (757)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~ 159 (757)
.....++.+.+++.....+++..|+.+.+.+.++.+.|++...+|..++.++++|.+.+.+.+..... ....+.++|++
T Consensus 126 ~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (489)
T 3hu3_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 205 (489)
T ss_dssp CCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSEEEECTTCEEECCSSCBCHHHHHHHHTCCCGGG
T ss_pred ccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCceEEcCCeEEEEccCcccccccccccCCCCHHH
Confidence 65567787788887666778899999999888888999999999999999999999998877764322 12346779999
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHH
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESN 239 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~ 239 (757)
|+|+++++++|++++..++.+|++|..+++.++.++||+||||||||++|++++..++.+|+.++|.++.+.+.|+....
T Consensus 206 i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~ 285 (489)
T 3hu3_A 206 IGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN 285 (489)
T ss_dssp CCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcce
Q 004384 240 LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDR 319 (757)
Q Consensus 240 l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~ 319 (757)
++.+|+.+....|++|||||+|.+.++++...++...++..+|+..+++......++||++||+++.+++++++++||+.
T Consensus 286 ~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~ 365 (489)
T 3hu3_A 286 LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR 365 (489)
T ss_dssp HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCE
T ss_pred HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCce
Confidence 99999999999999999999999999887777788889999999999998888899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhc
Q 004384 320 EIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSM 399 (757)
Q Consensus 320 ~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (757)
.++++.|+.++|.+||+.+++.+.+..+.++..++..+.||+++|+..+|.+|+..++++....+...............
T Consensus 366 ~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~ 445 (489)
T 3hu3_A 366 EVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSL 445 (489)
T ss_dssp EEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccC
Confidence 99999999999999999999998888888899999999999999999999999999998877666555555555555667
Q ss_pred ccchhhhhhhhccCCCCCceeeeeeccCCccccccchhhH
Q 004384 400 AVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENV 439 (757)
Q Consensus 400 ~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~ 439 (757)
.++.++|..++..+.|+.+++...+.|+++|+||||..+.
T Consensus 446 ~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~ 485 (489)
T 3hu3_A 446 AVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHH 485 (489)
T ss_dssp CBCHHHHHHHHTSHHHHHHHGGGC----------------
T ss_pred cCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccc
Confidence 8999999999999999999999999999999999998753
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-55 Score=470.54 Aligned_cols=262 Identities=37% Similarity=0.662 Sum_probs=246.3
Q ss_pred eeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCc
Q 004384 420 ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 499 (757)
Q Consensus 420 ~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~ 499 (757)
....+.|+++|+||+|++++|+.|++.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 500 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
++.++|+|++++.++.+|..|+..+||||||||||++++.|+.+....+....+++++||++||++....+|+||+|||+
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNr 330 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNK 330 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESC
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999776555556778999999999999999999999999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
|+.||||++||||||+.|+||+||.++|.+||+.+++++++..++|++.||+.|+|||||||+++|++|++.|+++.
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~--- 407 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER--- 407 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHH
Q 004384 660 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADI 707 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~ 707 (757)
...|+++||++|++++.++.+++.+
T Consensus 408 -----------------------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 -----------------------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp -----------------------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------------------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 2369999999999998776655443
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-54 Score=467.14 Aligned_cols=268 Identities=34% Similarity=0.661 Sum_probs=241.3
Q ss_pred eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 421 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 421 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
.+.+.|+++|+||+|++++|+.|++.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|+...........++++++|++||++....+|+||+|||+|
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrp 358 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRP 358 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCT
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCc
Confidence 99999999999999999999999999999999999999997765444456778999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 660 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 660 (757)
+.||||++||||||+.|+||+||.++|.+||+.+++++++..++|+..||+.|+|||||||+++|++|++.|+++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCC-HHHHHHHHHHH
Q 004384 661 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVS-DADIRKYQAFA 714 (757)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~-~~~~~~y~~~~ 714 (757)
...|+++||..|++++.++.. .+...+|.+|.
T Consensus 435 ----------------------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ----------------------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ----------------------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ----------------------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 236999999999998744322 23456677773
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-54 Score=467.94 Aligned_cols=271 Identities=40% Similarity=0.668 Sum_probs=247.5
Q ss_pred CCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 415 PSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 415 p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
|........+.|+++|+||+|++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 165 PLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp CCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 44444556778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 495 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 495 ~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
.++++++.++|+|++++.++.+|..|+...||||||||||+++++|.......+....+++++||++|||+....+|+||
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 99999999999999999999999999999999999999999999997765555566788999999999999999999999
Q ss_pred eeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 575 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 575 ~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
+|||+|+.||||++||||||+.|+||+||.++|.+||+.+++++++..++|+..+|+.|+|||||||.++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHH
Q 004384 655 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQ 711 (757)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~ 711 (757)
+. ...|+++||..|++++.++...+....|+
T Consensus 405 ~~--------------------------~~~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 405 DD--------------------------RDHINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp TT--------------------------CSSBCHHHHHHHHHHHHHTCC--------
T ss_pred cC--------------------------CCCCCHHHHHHHHHHHHhccCcccchhhh
Confidence 64 23699999999999998887755544443
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-53 Score=464.88 Aligned_cols=264 Identities=38% Similarity=0.651 Sum_probs=246.4
Q ss_pred CCCceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 415 PSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 415 p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
|........+.|+++|+||+|++++|+.|.+.+.+|+.+++.|.++|+++++|+|||||||||||++|+++|++++.+|+
T Consensus 165 ~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~ 244 (434)
T 4b4t_M 165 SRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFL 244 (434)
T ss_dssp CSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred chhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 33333445678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 495 SVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 495 ~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
.++++++.++|+|++++.++.+|..|+..+||||||||+|+++++|..+.+.......+++++||++||++....+|+||
T Consensus 245 ~v~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVI 324 (434)
T 4b4t_M 245 KLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVL 324 (434)
T ss_dssp EEEGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEE
T ss_pred EEehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999997665444455678999999999999999999999
Q ss_pred eeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 575 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 575 ~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
||||+|+.||||++||||||+.|+||+||.++|.+||+.+++++++..++|+..||+.|+|||||||+++|++|++.|++
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r 404 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCH
Q 004384 655 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSD 704 (757)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~ 704 (757)
+. ...|+++||.+|+++++|+.+.
T Consensus 405 ~~--------------------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 405 NG--------------------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp HT--------------------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred cC--------------------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 64 2379999999999999998763
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-53 Score=462.08 Aligned_cols=264 Identities=40% Similarity=0.660 Sum_probs=247.4
Q ss_pred eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 421 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 421 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
...+.|+++|+||+|++++|+.|.+.+.+|+.+++.|..+|+++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 162 ~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~ 241 (428)
T 4b4t_K 162 GENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241 (428)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecch
Confidence 45577999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
+.++|+|++++.++.+|..|+..+|||+||||+|++++.|.......+....+++++||++|||+....+|+||||||+|
T Consensus 242 l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~ 321 (428)
T 4b4t_K 242 FVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRA 321 (428)
T ss_dssp TCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCS
T ss_pred hhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999999997765555667889999999999999999999999999999
Q ss_pred CCCCccccCCCccceEEEec-CCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIP-LPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~-~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
+.||||++||||||+.|+|| +||.++|..||+.+++++++..++|+..+|+.|+|||||||.++|++|++.|+++.
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~--- 398 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--- 398 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC---
Confidence 99999999999999999997 89999999999999999999999999999999999999999999999999999864
Q ss_pred HHHHHHhhcCCCccccccccccccccccHHHHHHHHhh-cCCCCCHHHHHHH
Q 004384 660 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKF-ARRSVSDADIRKY 710 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~-~~~s~~~~~~~~y 710 (757)
...|+++||++|+.+ ++++.+.++++.|
T Consensus 399 -----------------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 399 -----------------------RYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp -----------------------CSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred -----------------------CCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 236999999999976 6788776665554
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=6.4e-46 Score=393.93 Aligned_cols=300 Identities=82% Similarity=1.287 Sum_probs=260.6
Q ss_pred ceeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEe
Q 004384 418 LRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVK 497 (757)
Q Consensus 418 ~~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~ 497 (757)
+++...+.|.++|++++|++++++.|.+.+.+++.+++.|..+++.+++++||+||||||||++|+++|++++.+|+.++
T Consensus 2 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 2 LRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CCCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC
Q 004384 498 GPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 577 (757)
Q Consensus 498 ~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT 577 (757)
++++.++|+|++++.++.+|+.++...|+++||||||.+...|+....+..+...+++++||..|+++....+++||+||
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 99999999999999999999999999999999999999999887654444456678999999999998888899999999
Q ss_pred CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 578 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 578 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
|+++.||++++|||||+..+++++|+.++|.+||+.++++.++..++++..++..+.||||+||.++|++|++.|+++.+
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999876
Q ss_pred HHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Q 004384 658 EKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQ 718 (757)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~ 718 (757)
................++.. .......|+++||+.|++.++||++++++++|++|.++|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVE-EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHC---------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred Hhhhhhhhhccccccccccc-ccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 54311100000000000000 0122468999999999999999999999999999999983
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9e-45 Score=422.61 Aligned_cols=266 Identities=38% Similarity=0.677 Sum_probs=240.8
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.|.++|+||+|++++++.|++.+.+|+.+++.|..+|+.+++|+|||||||||||+||+++|++++.+|+.++++++.++
T Consensus 198 ~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk 277 (806)
T 3cf2_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS
T ss_pred CCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
|+|++++.++.+|+.|+...||||||||||+|+++|+... +....+++++||++||++....+|+||+|||+|+.||
T Consensus 278 ~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~---~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH---GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC---CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC---ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999999987643 3467899999999999999889999999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 664 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 664 (757)
+|++||||||+.|++++||.++|.+||+.++++.++..++|+..+|+.|.||+|+||.++|++|++.|+++.......
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~-- 432 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL-- 432 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGG--
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987653210
Q ss_pred HhhcCCCccccccccccccccccHHHHHHHHhhcCCCC
Q 004384 665 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSV 702 (757)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~ 702 (757)
.. .. ..........|+++||..|++.++|+.
T Consensus 433 ----~~-~~--~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 433 ----ED-ET--IDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp ----TC-CC--CSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred ----cc-cc--cchhhhccceeeHHHHHHHHHhCCCcc
Confidence 00 00 000011234799999999999988753
No 12
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-43 Score=379.49 Aligned_cols=249 Identities=42% Similarity=0.772 Sum_probs=230.3
Q ss_pred ccCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 150 DRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 150 ~~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
.+.|+++|+||||++++++.|++.+.+|++||++|+.+|+.+++|+|||||||||||+||+++|++++.+|+.++++++.
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV 219 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS 306 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ 306 (757)
++|.|+++..++.+|+.|+...||||||||+|.+++.+.... +....+++.+|+..|+++....+|+||+|||+|+.
T Consensus 220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 999999999999999999999999999999999998875432 22346788999999999999899999999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
+||+++|+|||++.|+++.|+.++|.+||+.+++++++..++++..+|..|+||+|+|+..+|++|++.++++.
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~------ 373 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRER------ 373 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT------
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccCCC
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTSNP 415 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p 415 (757)
...++.+||..|+.++.+
T Consensus 374 -----------~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 374 -----------RIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp -----------CSBCCHHHHHHHHHHHHH
T ss_pred -----------CCCcCHHHHHHHHHHHhC
Confidence 234778888888776543
No 13
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-43 Score=378.78 Aligned_cols=293 Identities=34% Similarity=0.635 Sum_probs=249.1
Q ss_pred eeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-CCceEEEeCcc
Q 004384 422 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 500 (757)
Q Consensus 422 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-~~~~i~v~~~~ 500 (757)
..+.|.++|+||+|++++|+.|.+.+.+|+.+++.|.. +..+++++|||||||||||++|+++|.++ +.+|+.+++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 34678999999999999999999999999999988875 46778999999999999999999999999 89999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCeEEEEeeCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 579 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~tTn~ 579 (757)
+.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++||.+|+++. ...+++||+|||+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999887653 23467899999999999986 3678999999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
|+.+|++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+|+.++||||+||.++|++|++.|+++.+.
T Consensus 159 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~ 236 (322)
T 1xwi_A 159 PWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQS 236 (322)
T ss_dssp TTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887654 5678999999999999999999999999999998754
Q ss_pred HHHHHHHhhc---------------CCC---c--cc---cccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 004384 659 KDIERERRRR---------------DNP---E--AM---DEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQ 715 (757)
Q Consensus 659 ~~~~~~~~~~---------------~~~---~--~~---~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~ 715 (757)
.......... +.. . .+ +........+.|+++||..|+++++||++++++++|++|.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~ 316 (322)
T 1xwi_A 237 ATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316 (322)
T ss_dssp CSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 2100000000 000 0 00 00001112357999999999999999999999999999999
Q ss_pred HHhhc
Q 004384 716 TLQQS 720 (757)
Q Consensus 716 ~~~~~ 720 (757)
+|+.+
T Consensus 317 ~~~~~ 321 (322)
T 1xwi_A 317 DFGQE 321 (322)
T ss_dssp TTCSC
T ss_pred HHccC
Confidence 99753
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.1e-43 Score=370.54 Aligned_cols=266 Identities=48% Similarity=0.865 Sum_probs=219.7
Q ss_pred eccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 424 EVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 424 ~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
..|.++|+||+|++++|+.|.+.+.+|+.+++.+..+++.+++|++|+||||||||+|++++|++++.+++.++++++.+
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 504 MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
+|+|++++.++.+|+.++...|+++|+||+|.++..|+... .....+++++++.+|++......++++++||+|+.|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~---~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE---TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCc---chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC
Confidence 99999999999999999999999999999999987765321 123457889999999999888899999999999999
Q ss_pred CccccCCCccceEEEecCCCHHHHHHHHHHhhcc---CCCCCccCHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 584 DPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK---SPVSKDVDLRALAKYT--QGFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 584 d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~---~~~~~~~d~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
|+|++||||||+.|++++|+.++|.+||+.+++. .++..++|+..+|..+ +||||+||.++|++|++.|+++.+.
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999954 4566789999999875 5999999999999999999988654
Q ss_pred HHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHH
Q 004384 659 KDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADI 707 (757)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~ 707 (757)
.... ..+.....|+++||++|+++++||++++++
T Consensus 240 ~~~~---------------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 240 RQKS---------------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp -------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred hccc---------------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 2210 001123479999999999999999998875
No 15
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-42 Score=370.99 Aligned_cols=249 Identities=45% Similarity=0.739 Sum_probs=229.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||||++++++.|++.+.+|+.||++|+.+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
+|.|+++..++.+|..|....||||||||+|.++..+.... +....+.+.+|+..++++....+++||+|||+|+.+
T Consensus 255 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~L 334 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTC
T ss_pred ccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhc
Confidence 99999999999999999999999999999999999875432 223456778899999999888899999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
||+++|+|||++.|+++.|+.++|.+||+.+++++++..+++++.+|..|+||+|+||.++|++|++.++++..
T Consensus 335 DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~------ 408 (437)
T 4b4t_I 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERR------ 408 (437)
T ss_dssp CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred chhhhHHHhhhcccchhhhhhhhccCCCC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTSNPS 416 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~~p~ 416 (757)
..++.+||..|+.++.++
T Consensus 409 -----------~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 409 -----------MQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp -----------SCBCHHHHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHHhCC
Confidence 346778888887766443
No 16
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=4.6e-42 Score=367.97 Aligned_cols=294 Identities=35% Similarity=0.653 Sum_probs=246.3
Q ss_pred eeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 421 TVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 421 ~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
...+.|.++|++++|++++++.|.+.+.+|..+++.+.. +..+++++||+||||||||++|+++|.+++.+|+.+++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 355678999999999999999999999999988888876 5577889999999999999999999999999999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCeEEEEeeCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 579 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~tTn~ 579 (757)
+.++|+|++++.++.+|+.++...|+||||||||.+.+.|+... .....+++++|+..|+++. ...+++||+|||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE---SEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc---chHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 99999999999999999999999999999999999998875432 3467899999999999884 5678999999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
|+.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..+++.++||||+||.++|++|++.|+++...
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~ 241 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQS 241 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999 999999999999999999999999887654 5678999999999999999999999999999998764
Q ss_pred HHHHHH----Hhh-----cCCCcc-----c---cccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhc
Q 004384 659 KDIERE----RRR-----RDNPEA-----M---DEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQS 720 (757)
Q Consensus 659 ~~~~~~----~~~-----~~~~~~-----~---~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~ 720 (757)
...... ... .+...+ + +..........||++||.+|++.++||++++++.+|++|.++|+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 242 ATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp CEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 310000 000 000000 0 0000111236799999999999999999999999999999999764
No 17
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-41 Score=370.72 Aligned_cols=250 Identities=38% Similarity=0.675 Sum_probs=232.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
+|.|+++..++.+|..|....||||||||+|.++..+..... ....+.+.+|+..|+++....+|+||+|||+|+.+
T Consensus 254 ~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~L 333 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVL 333 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhc
Confidence 999999999999999999999999999999999988754432 23456778899999999988899999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
||++.|+|||++.|+++.|+.++|.+||+.+++++++..++++..+|..|+||+|+|+.++|++|++.++++..
T Consensus 334 D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~------ 407 (434)
T 4b4t_M 334 DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ------ 407 (434)
T ss_dssp CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999998899999999999999999999999999998887532
Q ss_pred chhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
..++.+||..|+..+.|+.
T Consensus 408 -----------~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 408 -----------SSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp -----------SSBCHHHHHHHHHSCSSSC
T ss_pred -----------CCcCHHHHHHHHHHHhCCC
Confidence 3478889999999887764
No 18
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-41 Score=366.77 Aligned_cols=246 Identities=42% Similarity=0.723 Sum_probs=227.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..|+++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCch---HHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHG---EVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~---~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
++.|+++..++.+|..|....||||||||+|.++..+..... ....+.+.+++..|++.....+|+||+|||+|+.+
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 999999999999999999999999999999999988754332 23456778899999999888999999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
|++++|+|||++.|+++.|+.++|.+||+.+++++++..+++++.++..|+||+|+||..+|++|++.++++..
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~------ 435 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------ 435 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC------
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999999899999999999999999999999999998887642
Q ss_pred chhhhHHHhhhcccchhhhhhhhccC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTS 413 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~ 413 (757)
..++.+||..|+.++
T Consensus 436 -----------~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 436 -----------KVATEKDFLKAVDKV 450 (467)
T ss_dssp -----------SSBCHHHHHHHHHHH
T ss_pred -----------CccCHHHHHHHHHHH
Confidence 236677888777654
No 19
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-41 Score=371.42 Aligned_cols=249 Identities=40% Similarity=0.729 Sum_probs=229.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||||++++++.|++.+.+|+.||++|..+|+.+++|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
+|.|+++..++.+|..|....||||||||+|.++..+.... +....+++.+|+..|+++....+++||+|||+|+.+
T Consensus 254 k~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~L 333 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTL 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSS
T ss_pred ccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhh
Confidence 99999999999999999999999999999999998875432 233456788999999999988899999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
||+++|+|||++.|+++.|+.++|.+||+.+++++++..+.++..++..|+||+|+||..+|.+|++.++++..
T Consensus 334 DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~------ 407 (437)
T 4b4t_L 334 DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDR------ 407 (437)
T ss_dssp CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTC------
T ss_pred CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC------
Confidence 99999999999999999999999999999999999998899999999999999999999999999998887532
Q ss_pred chhhhHHHhhhcccchhhhhhhhccCCCC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTSNPS 416 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~~p~ 416 (757)
..++.+||..|+.++.+.
T Consensus 408 -----------~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 408 -----------DHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -----------SSBCHHHHHHHHHHHHHT
T ss_pred -----------CCCCHHHHHHHHHHHHhc
Confidence 236778888888776554
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3.5e-41 Score=365.29 Aligned_cols=292 Identities=36% Similarity=0.668 Sum_probs=237.3
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
...+.++|++|+|++++++.|.+.+.+|+.+++.|.. +..+++++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 3467899999999999999999999999888888877 567788999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC-CCeEEEEeeCCCCC
Q 004384 503 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPD 581 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~tTn~~~ 581 (757)
++|+|++++.++.+|..++...|+||||||||.+.+.|+.. ......+++++||..|+++.. ..+++||+|||+|+
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999999887543 234678899999999998864 56899999999999
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 582 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 660 (757)
Q Consensus 582 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 660 (757)
.||++++| ||+..+++++|+.++|.+||+.++++.+.. .+.++..||+.++||+|+||.++|++|++.|+++.....
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999 999999999999999999999999887653 567899999999999999999999999999999865321
Q ss_pred H-------HHHH-hhc-CCCc-----cc---cccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhc
Q 004384 661 I-------ERER-RRR-DNPE-----AM---DEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQS 720 (757)
Q Consensus 661 ~-------~~~~-~~~-~~~~-----~~---~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~ 720 (757)
. .... ... .... .+ +..........|+++||..|++.++||++.+++..|++|.++|+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 0 0000 000 0000 00 0001111245799999999999999999999999999999999764
No 21
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-40 Score=362.80 Aligned_cols=245 Identities=42% Similarity=0.684 Sum_probs=227.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||||++++++.|++.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++|++++.+|+.++++++.+
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
++.|+++..++.+|..|....|||+||||+|.++..+... .+....+++.+|+..|+++....+++||+|||+|+.+
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999887432 2334578889999999999988999999999999999
Q ss_pred CHHhhccCCcceEEEeC-CCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 308 DPALRRFGRFDREIDIG-VPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~-~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
||+++|+|||++.|++| .|+..+|..||+.+++++++..+.++..+|..|+||+|+|+.++|++|++.++++..
T Consensus 325 D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~----- 399 (428)
T 4b4t_K 325 DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR----- 399 (428)
T ss_dssp CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC-----
Confidence 99999999999999996 899999999999999999998889999999999999999999999999999887642
Q ss_pred cchhhhHHHhhhcccchhhhhhhhcc
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGT 412 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~ 412 (757)
..++.+||..|+..
T Consensus 400 ------------~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 400 ------------YVILQSDLEEAYAT 413 (428)
T ss_dssp ------------SSBCHHHHHHHHHH
T ss_pred ------------CCCCHHHHHHHHHH
Confidence 24677888888754
No 22
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=1.5e-40 Score=370.66 Aligned_cols=293 Identities=33% Similarity=0.632 Sum_probs=238.6
Q ss_pred eeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-CCceEEEeCcc
Q 004384 422 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QANFISVKGPE 500 (757)
Q Consensus 422 ~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-~~~~i~v~~~~ 500 (757)
....|.++|++|+|++++++.|.+.+.+|+.++..|.. +..+++++||+||||||||++|+++|.++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 34567899999999999999999999999888888775 45677899999999999999999999999 89999999999
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCeEEEEeeCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNR 579 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~tTn~ 579 (757)
+.++|+|++++.++.+|+.++...|+||||||||.+.+.|+.. ......+++++||..|+++. ...+++||+|||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999999887653 23567899999999999976 3578999999999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
|+.||++++| ||+..+++++|+.++|..||+.++++.+.. .+.++..||+.++||||+||.++|++|++.|+++.+.
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~ 358 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQS 358 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999887653 5678999999999999999999999999999998754
Q ss_pred HHHHHHHhhcC--C-------------Cc-----cc---cccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHH
Q 004384 659 KDIERERRRRD--N-------------PE-----AM---DEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQ 715 (757)
Q Consensus 659 ~~~~~~~~~~~--~-------------~~-----~~---~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~ 715 (757)
........... . .. .+ +.+..+...+.||++||..|++.++||++++++..|++|.+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~ 438 (444)
T 2zan_A 359 ATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTE 438 (444)
T ss_dssp CSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTS
T ss_pred hhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 21000000000 0 00 00 00011112358999999999999999999999999999999
Q ss_pred HHhhc
Q 004384 716 TLQQS 720 (757)
Q Consensus 716 ~~~~~ 720 (757)
+|+..
T Consensus 439 ~~~~~ 443 (444)
T 2zan_A 439 DFGQE 443 (444)
T ss_dssp SCTTT
T ss_pred HHcCC
Confidence 98653
No 23
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2e-37 Score=343.90 Aligned_cols=248 Identities=40% Similarity=0.770 Sum_probs=221.7
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
+.++|++++|++++++.+.+.+.+ +.++..+.+++..+++|+||+||||||||++|+++|++++.+|+.++++++...|
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 568999999999999999998765 5677888999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
+|.++..++.+|..|+...||||||||+|.+..+|+...+.......+++++||.+||++....+++||+|||+|+.+|+
T Consensus 90 ~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~ 169 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDP 169 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCG
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhch
Confidence 99999999999999999999999999999999887653333334567899999999999887789999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
+++||||||+.|++++|+.++|.+|++.++++.++..++++..+++.+.||+|+||.++|++|+..|.++.
T Consensus 170 allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--------- 240 (476)
T 2ce7_A 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--------- 240 (476)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---------
T ss_pred hhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC---------
Confidence 99999999999999999999999999999999988888999999999999999999999999999887643
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
...|+.+||..|+..+.+
T Consensus 241 -----------------~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 241 -----------------RDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -----------------CSSBCHHHHHHHHHHHC-
T ss_pred -----------------CCeecHHHHHHHHHHHhc
Confidence 237999999999998743
No 24
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=5.3e-36 Score=310.65 Aligned_cols=250 Identities=40% Similarity=0.765 Sum_probs=220.8
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.+...|++++|++++++.+.+.+.+ +.++..+..++...+++++|+||||||||++|+++|++++.+++.++++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4678999999999999999988765 566777888888889999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
|.|+.++.++.+|+.+....|+++|+||+|.+...+............+.++++|..|+++....+++||+|||+++.+|
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 99999999999999999999999999999999987765432223345678999999999988888999999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 664 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 664 (757)
++++|||||++.+++++|+.++|.+|++.++++.++..+.++..++..+.|||++||.++|++|+..|.++.
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-------- 236 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 236 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999999888888999999999999999999999999999887653
Q ss_pred HhhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 004384 665 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 701 (757)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 701 (757)
...|+.+||++|++.+...
T Consensus 237 ------------------~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 237 ------------------KRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp ------------------CSSBCHHHHHHHHHHHTTC
T ss_pred ------------------CCcccHHHHHHHHHHHhcC
Confidence 2379999999999987543
No 25
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.4e-36 Score=318.12 Aligned_cols=271 Identities=45% Similarity=0.754 Sum_probs=232.3
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
...|.++|++++|++++++.|.+.+..++.+++.+..+++.++.++||+||||||||++|+++|..++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC
Q 004384 503 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 582 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ 582 (757)
+.|.|+.+..++.+|..++...|+||||||+|.+.+++............+.+..++..++++....+++||+|||.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 99999999999999999999999999999999999887654333334556788899999998888889999999999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 662 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 662 (757)
+|++++|++||+..+++++|+.++|.+||+.++++..+..+.++..++..+.||+|+||.++|++|...|+.+.
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~------ 242 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL------ 242 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999888888999999999999999999999999999998764
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHhh
Q 004384 663 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR--SVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~--s~~~~~~~~y~~~~~~~~~ 719 (757)
...|+.+||.+|++.+.+ +.+...-..|..|..+|.+
T Consensus 243 --------------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 243 --------------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp --------------------CSSBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred --------------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 237999999999998743 3334446778888887754
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=327.75 Aligned_cols=275 Identities=37% Similarity=0.678 Sum_probs=233.6
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.+.+.|++++|++.+++.|.+.+.+++.+++.+...+ .+++++||+||||||||++|+++|.+++.+|+.++++++.++
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 4678999999999999999999998888887776654 567889999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC--CCeEEEEeeCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATNRPDI 582 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~tTn~~~~ 582 (757)
|.|+.++.++.+|..++...|+||||||||.+.+.|... ......+++++||..|++... ..+++||+|||+++.
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~ 233 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG---EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE 233 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---cchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence 999999999999999999999999999999999877543 234678899999999998753 468999999999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDI 661 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~ 661 (757)
+|++++| ||+..+++++|+.++|.+|++.++++.+.. .+.++..+++.+.||+|+||.++|++|+..++++......
T Consensus 234 l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~ 311 (357)
T 3d8b_A 234 IDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI 311 (357)
T ss_dssp BCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC---
T ss_pred CCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999 999999999999999999999999776543 3457889999999999999999999999999886421110
Q ss_pred HHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 004384 662 ERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 719 (757)
. .........|+.+||..|++.++||+++++++.|++|.+.|+.
T Consensus 312 ~--------------~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~ 355 (357)
T 3d8b_A 312 A--------------TITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355 (357)
T ss_dssp ---------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSC
T ss_pred c--------------cccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCC
Confidence 0 0001224589999999999999999999999999999999964
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.5e-36 Score=320.09 Aligned_cols=276 Identities=36% Similarity=0.646 Sum_probs=230.0
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.+.+.|++++|++.+++.|.+.+.++..+++.+..++ .++.++||+||||||||++|+++|++++.+|+.++++++.+.
T Consensus 15 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 15 GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 4678999999999999999999988888888777654 457889999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCC---CeEEEEeeCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAK---KTVFIIGATNRPD 581 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~---~~v~vi~tTn~~~ 581 (757)
|.|+++..++.+|..+....|++|||||+|.+...+.... .....++.++||..+++.... .+++||+|||+|+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 9999999999999999999999999999999998775432 235678899999999987643 5799999999999
Q ss_pred CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 582 IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKD 660 (757)
Q Consensus 582 ~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~ 660 (757)
.+|++++| ||+..+++++|+.++|..|++.++++.+.. .+.++..+++.+.||+|+||.++|++|+..|+++.....
T Consensus 171 ~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~ 248 (297)
T 3b9p_A 171 ELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQ 248 (297)
T ss_dssp GBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC---
T ss_pred hCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999 999999999999999999999999876543 345688999999999999999999999999998753211
Q ss_pred HHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhhc
Q 004384 661 IERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQS 720 (757)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~~ 720 (757)
... . .......|+.+||..|++.++||+++++++.|++|.+.|+..
T Consensus 249 ~~~----------~----~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~ 294 (297)
T 3b9p_A 249 VKC----------L----DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDI 294 (297)
T ss_dssp -------------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC------
T ss_pred ccc----------c----cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCe
Confidence 100 0 011235799999999999999999999999999999999753
No 28
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-35 Score=330.62 Aligned_cols=248 Identities=43% Similarity=0.779 Sum_probs=223.7
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
+.++|++++|+++++..+.+.+.+ +.++..+.++++..++|++|+||||||||+||+++|++++.+|+.++++++...|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 688999999999999999988764 5667788899999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
+|.....++.+|+.++...||++||||||.+...|+...........+.++++|.+|++......++++++||+|+.||+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 99999999999999988889999999999998877543222233456789999999999988888999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
+++||||||+.|+|++||.++|.+||+.++++.++..++++..+|..+.||+|+||+++|++|+..|.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999999888889999999999999999999999999998877542
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
...|+++||+.|+..+.+
T Consensus 256 -----------------~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 256 -----------------RRKITMKDLEEAADRVMM 273 (499)
T ss_dssp -----------------CSSCCSHHHHHHHHHHTT
T ss_pred -----------------CCccCHHHHHHHHHHHhc
Confidence 237999999999998754
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.9e-36 Score=337.62 Aligned_cols=266 Identities=38% Similarity=0.675 Sum_probs=235.3
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
.+.|++++|++..++.|.+.+.+++.+++.|..++..++.++||+||||||||++|+++|.+++.+|+.++++++.+.|+
T Consensus 200 ~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~ 279 (489)
T 3hu3_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (489)
T ss_dssp CCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCcc
Q 004384 507 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPA 586 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~a 586 (757)
|+++..++.+|+.|....|++|||||||.+.+++... .+....+++++||..|++.....+++||+|||+++.||++
T Consensus 280 g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~---~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC---CCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc---cchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence 9999999999999999999999999999999887543 2346789999999999998888899999999999999999
Q ss_pred ccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004384 587 LLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERR 666 (757)
Q Consensus 587 llrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~ 666 (757)
+.|+|||+..|++++|+.++|.+||+.+++..++..++++..++..+.||+|+||.++|++|++.|+++.....
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i------ 430 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI------ 430 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTC------
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccc------
Confidence 99999999999999999999999999999999988899999999999999999999999999999998764311
Q ss_pred hcCCCccccccccccccccccHHHHHHHHhhcCCCCCH
Q 004384 667 RRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSD 704 (757)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~ 704 (757)
.. ..............|+++||+.|++.++||...
T Consensus 431 --~~-~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~r 465 (489)
T 3hu3_A 431 --DL-EDETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (489)
T ss_dssp --CT-TCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHH
T ss_pred --cc-cccccchhhcccCcCCHHHHHHHHHhCCchhhh
Confidence 00 000000001123479999999999999876543
No 30
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=8.3e-35 Score=301.08 Aligned_cols=246 Identities=43% Similarity=0.798 Sum_probs=215.2
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
...|.++|++++|+++++..+.+.+.+ +.++..+..+++..++|++|+||||||||+|++++++.++.+++.+++.++.
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~ 86 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 86 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHH
Confidence 446789999999999999999887654 4566788888999999999999999999999999999999999999999998
Q ss_pred ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC
Q 004384 503 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 582 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ 582 (757)
..+.+...+.++.+|+.+....|+++|+||+|.+...++...........+.+++++.+|++......++++++||+|+.
T Consensus 87 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 87 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp HSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchh
Confidence 88889888999999999988889999999999998776532112233456788999999999888788999999999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 662 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 662 (757)
+|++++|+|||++.+++++|+.++|.+||+.+++..++..++++..+|+.+.||+|+||.++|++|+..|.++.
T Consensus 167 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~------ 240 (254)
T 1ixz_A 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG------ 240 (254)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------
T ss_pred CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999998888888999999999999999999999999998887643
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHH
Q 004384 663 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESM 695 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~ 695 (757)
...|+.+||++|+
T Consensus 241 --------------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 --------------------RRKITMKDLEEAA 253 (254)
T ss_dssp --------------------CSSBCHHHHHHHT
T ss_pred --------------------CCCcCHHHHHHHh
Confidence 2369999999986
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=316.55 Aligned_cols=277 Identities=35% Similarity=0.617 Sum_probs=226.1
Q ss_pred eeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 423 VEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 423 ~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
...+.+.|++++|++.+++.|.+.+.++..+++.+..++ .++.++||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 107 ~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~ 185 (389)
T 3vfd_A 107 DNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT 185 (389)
T ss_dssp CCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-
T ss_pred ccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhh
Confidence 345678999999999999999999988888777777665 4568899999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC--CCeEEEEeeCCCC
Q 004384 503 TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--KKTVFIIGATNRP 580 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--~~~v~vi~tTn~~ 580 (757)
+.|+|+.+..++.+|..++...|+||||||||.++..+... ......+++++|+..|++... ..+++||+|||++
T Consensus 186 ~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~ 262 (389)
T 3vfd_A 186 SKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRP 262 (389)
T ss_dssp ------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCG
T ss_pred ccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999998876543 234578999999999998754 4679999999999
Q ss_pred CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004384 581 DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 659 (757)
Q Consensus 581 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~ 659 (757)
+.||++++| ||+..++|++|+.++|.+||+.++.+.+.. .+.++..+++.+.||++++|..+|+.|+..++++....
T Consensus 263 ~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 263 QELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp GGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred hhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999 999999999999999999999999876543 34568899999999999999999999999998864211
Q ss_pred HHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhh
Q 004384 660 DIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQ 719 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~~~~~~y~~~~~~~~~ 719 (757)
... .........|+.+||..+++.++++++.+.++.|++|.+.|+.
T Consensus 341 ~~~--------------~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 341 QVK--------------NMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp -----------------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred hhh--------------ccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 100 0001123579999999999999999999999999999999865
No 32
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.8e-34 Score=296.90 Aligned_cols=262 Identities=40% Similarity=0.710 Sum_probs=212.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
.++++|+||||++++++.|++.+.+|+.+++.++++++..+++++|+||||||||||++++|+.++..++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHh
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 311 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l 311 (757)
+.++.+..++.+|+.+....|+++|+||++.++..++........++..+++..|++......++++++||+|+.+|+++
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al 163 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAI 163 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhh
Confidence 88888899999999998889999999999998876533222222356788889999888878899999999999999999
Q ss_pred hccCCcceEEEeCCCCHHHHHHHHHHHhcC---CCCCCchhhhHHhHhc--CCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 312 RRFGRFDREIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDT--HGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 312 ~r~~rf~~~i~i~~p~~~~r~~il~~~~~~---~~l~~~~~l~~la~~t--~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
+|++||++.++++.|+.++|.+|++.+++. .++..+.++..++..+ +||+|+|+..+|++|++.++++.......
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~ 243 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKS 243 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999998854 4456678899999875 59999999999999999888764321110
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccCCCCCce
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTSNPSALR 419 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~ 419 (757)
........++.+||..|+..+.|+...
T Consensus 244 ------~~~~~~~~i~~~df~~al~~~~ps~~~ 270 (274)
T 2x8a_A 244 ------GNEKGELKVSHKHFEEAFKKVRSSISK 270 (274)
T ss_dssp ------------CCBCHHHHHHHHTTCCCCC--
T ss_pred ------cccccCCeecHHHHHHHHHHhcCCCCh
Confidence 011124568999999999999887543
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=300.48 Aligned_cols=248 Identities=40% Similarity=0.735 Sum_probs=198.7
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
|.++|++++|++++++.+.+.+.+ +.+++.+..++..+++++||+||||||||++|+++|.+++.+++.++++++.+.|
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 468899999999999999988765 5667778888889999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCC-CCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGD-AGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
.|.++..++.+|+.+....|+||||||+|.+...|+..... ........++.++.++++.....+++||+|||.++.+|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld 159 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILD 159 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcC
Confidence 99999999999999999999999999999998876442111 01234567899999999987778999999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC--HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD--LRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 662 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d--~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 662 (757)
++++|||||+..+++++|+.++|.+||+.++++.++..+.+ +..+++.+.||+|+||.++|++|+..|.++.
T Consensus 160 ~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~------ 233 (262)
T 2qz4_A 160 GALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG------ 233 (262)
T ss_dssp SGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----------
T ss_pred HHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 99999999999999999999999999999998887665544 4789999999999999999999999888654
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 663 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
...|+.+||..|++.+.+
T Consensus 234 --------------------~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 234 --------------------HTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp -----------------------CCBCCHHHHHHHHHH
T ss_pred --------------------CCCCCHHHHHHHHHHhcc
Confidence 236899999999987743
No 34
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=3e-33 Score=333.82 Aligned_cols=435 Identities=22% Similarity=0.322 Sum_probs=298.4
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEE
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCI 223 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~v 223 (757)
+-.++++.|.+++++++.+.+.. ..+.+++|+||||||||+++++++..+ +..++.+
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred cCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34688999999999988877653 245789999999999999999999987 5567777
Q ss_pred echhhh--hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004384 224 NGPEIM--SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT 301 (757)
Q Consensus 224 ~~~~l~--~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~at 301 (757)
+...+. ..+.|..+..++.+|+.+....+++|||||+|.+.+......+.. ...+.+..+.....+.+|++|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~------~~~~~L~~~l~~~~~~~I~at 322 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQV------DAANLIKPLLSSGKIRVIGST 322 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHH------HHHHHHSSCSSSCCCEEEEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchH------HHHHHHHHHHhCCCeEEEEEe
Confidence 766665 357788899999999999887889999999999987654322221 223444445556678888888
Q ss_pred CCC-----CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC------CCCCCchhhhHHhHhcCCC-----chhHH
Q 004384 302 NRP-----NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN------MKLSDDVDLERIAKDTHGY-----VGADL 365 (757)
Q Consensus 302 n~~-----~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~l~~~~~l~~la~~t~g~-----~~~dl 365 (757)
+.+ -.+|+++.+ ||. .+.++.|+.+++.+|++.+... +.+. +..+..++..+.+| .+..+
T Consensus 323 ~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp CHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred CchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCchHH
Confidence 864 256788988 886 6999999999999999866532 2222 23456666665554 44456
Q ss_pred HHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCCCCCceeeeeeccCCccc--------------
Q 004384 366 AALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWE-------------- 431 (757)
Q Consensus 366 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~-------------- 431 (757)
..++.+++......... .....++.+++..++...... ....+.|+
T Consensus 399 i~lld~a~~~~~~~~~~-------------~~~~~v~~~di~~~~~~~~~i-------p~~~~~~~~~~~l~~l~~~l~~ 458 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVS-------------KRKKTVNVADIESVVARIARI-------PEKSVSQSDRDTLKNLGDRLKM 458 (758)
T ss_dssp HHHHHHHHHHHHHSSSC-------------CCCCSCCHHHHHHHHHHHSCC-------CCCCSSSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccc-------------ccCCccCHHHHHHHHHHhcCC-------CccccchhHHHHHHHHHHHHHh
Confidence 67777665432211000 011234455555444332110 01122333
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhccc----CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc---
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGM----SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM--- 504 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~----~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~--- 504 (757)
++.|++++++.+...+.. ...|+ .|..++||+||||||||++|+++|..++.+|+.++++++..+
T Consensus 459 ~v~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 355666666665554432 11122 233469999999999999999999999999999999887643
Q ss_pred ---------ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------
Q 004384 505 ---------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------- 566 (757)
Q Consensus 505 ---------~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------- 566 (757)
|+|..+. +.+....+..+++|+||||||.+ ...+++.|++.||...
T Consensus 531 ~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~--------------~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA--------------HPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp SSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS--------------CHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred hhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc--------------CHHHHHHHHHHhcCcEEEcCCCCEE
Confidence 4443322 23455556667899999999985 3568889999888421
Q ss_pred CCCeEEEEeeCCCCC-------------------------CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC---
Q 004384 567 AKKTVFIIGATNRPD-------------------------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS--- 618 (757)
Q Consensus 567 ~~~~v~vi~tTn~~~-------------------------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~--- 618 (757)
...+++||+|||.+. .++|++++ |||.+|.|++|+.+++..|++.++++.
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 124688999999854 57788887 999999999999999999999988632
Q ss_pred ----CCCCcc---CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 619 ----PVSKDV---DLRALAKYT--QGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 619 ----~~~~~~---d~~~la~~~--~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
.+...+ -+..|++.. .+++.+++.++++.+...++.+.+
T Consensus 673 ~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 673 LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred HHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 111112 245566543 456789999999999888777654
No 35
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=3.2e-33 Score=293.07 Aligned_cols=244 Identities=43% Similarity=0.800 Sum_probs=213.5
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.+.++|++++|++++++.+.+.+.. +..+..+..+++..++|++|+||||||||||++++++.++.+++.+++.++...
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 112 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHH
Confidence 4789999999999999999887654 455677888899999999999999999999999999999999999999999888
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
+.+...+.++.+|+.+....|+++|+||+|.+...+............+.+++++.+|++......++++++||+|+.||
T Consensus 113 ~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 113 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 88888889999999999888999999999999876643211122345678899999999988777899999999999999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 664 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~ 664 (757)
++++|++||++.+++++|+.++|.+||+.+++..++..++++..+|..+.||+|+||+++|++|+..|.++.
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-------- 264 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG-------- 264 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 999999999999999999999999999999998888888999999999999999999999999998887542
Q ss_pred HhhcCCCccccccccccccccccHHHHHHHH
Q 004384 665 RRRRDNPEAMDEDAAEDEVSEIKAAHFEESM 695 (757)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~ 695 (757)
...|+.+||++|+
T Consensus 265 ------------------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ------------------RRKITMKDLEEAA 277 (278)
T ss_dssp ------------------CCSBCHHHHHHHT
T ss_pred ------------------CCCcCHHHHHHHh
Confidence 2369999999986
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=1e-32 Score=328.61 Aligned_cols=443 Identities=19% Similarity=0.299 Sum_probs=280.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++++.|.++.++++.+.+.. ....++||+||||||||++|+++|..+ +..++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 344688999999999998887754 234579999999999999999999997 667777
Q ss_pred EechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004384 223 INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 302 (757)
Q Consensus 223 v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn 302 (757)
+++ ...+.|+.+..++.+|..+....++||||| . .. ...+ .+........+.+|++||
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~-----~~-----~~~~----~L~~~l~~~~v~~I~at~ 299 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----AI-----DASN----ILKPSLARGELQCIGATT 299 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTTSSSCEEEEECC
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C-----ch-----hHHH----HHHHHHhcCCEEEEeCCC
Confidence 776 456678888899999999999899999999 0 00 0112 222333456789999999
Q ss_pred CCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-----CchhhhHHhHhcC-----CCchhHHHH
Q 004384 303 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-----DDVDLERIAKDTH-----GYVGADLAA 367 (757)
Q Consensus 303 ~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-----~~~~l~~la~~t~-----g~~~~dl~~ 367 (757)
..+ .+++++++ || ..+.++.|+.+++.+|++.+...+... .+..+..++..++ ++.+.....
T Consensus 300 ~~~~~~~~~~d~al~r--Rf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 300 LDEYRKYIEKDAALER--RF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp TTTTHHHHTTCSHHHH--SE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred hHHHHHHhhccHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 887 78999999 99 569999999999999999776553211 2233555555443 455566666
Q ss_pred HHHHHHHHHHHhhcccc-cccc--hh---hh--------------------------HH------------Hhhhcccch
Q 004384 368 LCTEAALQCIREKMDVI-DLED--ET---ID--------------------------AE------------ILNSMAVSN 403 (757)
Q Consensus 368 l~~~a~~~~~~~~~~~~-~~~~--~~---~~--------------------------~~------------~~~~~~~~~ 403 (757)
++.+++........... .... .. .. .. ......++.
T Consensus 377 ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 456 (758)
T 3pxi_A 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTV 456 (758)
T ss_dssp HHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGGHHHHCC---CCT
T ss_pred HHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccCH
Confidence 77666543322211100 0000 00 00 00 000111222
Q ss_pred hhhhhhhccCCCC---Cce----eeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCC
Q 004384 404 EHFQTALGTSNPS---ALR----ETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGC 476 (757)
Q Consensus 404 ~~~~~al~~~~p~---~~~----~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGt 476 (757)
+++...+...... ... +........-..++.|++.+++.+.+.+....... . ..-.|..++||+|||||
T Consensus 457 ~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~---~-~~~~p~~~~Ll~Gp~Gt 532 (758)
T 3pxi_A 457 DDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGL---K-DPKRPIGSFIFLGPTGV 532 (758)
T ss_dssp HHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTC---S-CTTSCSEEEEEESCTTS
T ss_pred HHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHccc---C-CCCCCceEEEEECCCCC
Confidence 2332222221100 000 00001111123567888888888777665321110 0 01122236999999999
Q ss_pred ChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHH
Q 004384 477 GKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADR 553 (757)
Q Consensus 477 GKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~ 553 (757)
|||++|+++|..+ +.+|+.++++++...+... ...++...+..+++|+|||||+.+ ...
T Consensus 533 GKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~--------------~~~ 594 (758)
T 3pxi_A 533 GKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKA--------------HPD 594 (758)
T ss_dssp SHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGS--------------CHH
T ss_pred CHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCcccc--------------CHH
Confidence 9999999999987 6789999999988776554 233445556667789999999885 357
Q ss_pred HHHHHHHhhcCCC---------CCCeEEEEeeCCCCCC------------CCccccCCCccceEEEecCCCHHHHHHHHH
Q 004384 554 VLNQLLTEMDGMS---------AKKTVFIIGATNRPDI------------IDPALLRPGRLDQLIYIPLPDEDSRHQIFK 612 (757)
Q Consensus 554 ~~~~ll~~ld~~~---------~~~~v~vi~tTn~~~~------------ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 612 (757)
+++.|++.|+... ...+++||+|||.+.. +.|+++. ||+.+|.|++|+.+++..|++
T Consensus 595 ~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~ 672 (758)
T 3pxi_A 595 VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVS 672 (758)
T ss_dssp HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHH
T ss_pred HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHH
Confidence 7888888887522 2346799999997654 7788887 999999999999999999999
Q ss_pred HhhccC-------CCCCccC---HHHHHHH--cCCCCHHHHHHHHHHHHHHHHHHHH
Q 004384 613 ACLRKS-------PVSKDVD---LRALAKY--TQGFSGADITEICQRACKYAIRENI 657 (757)
Q Consensus 613 ~~l~~~-------~~~~~~d---~~~la~~--~~g~sg~di~~~~~~a~~~a~~~~~ 657 (757)
.++.+. .....++ +..|++. ...++.++++++++.+...++.+.+
T Consensus 673 ~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 673 LMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 888542 2221222 4555543 3456789999999988888777654
No 37
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-32 Score=290.29 Aligned_cols=227 Identities=38% Similarity=0.687 Sum_probs=207.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-CCeEEEEechhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIMS 230 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-~~~~~~v~~~~l~~ 230 (757)
.++++|+||+|+++.++.|++.+.+|+.+|++|.. +..+++++||+||||||||+||+++|+++ +..++.++++++.+
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 46789999999999999999999999999999875 35678999999999999999999999999 88999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCCH
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~v~vI~atn~~~~ld~ 309 (757)
.+.|+.+..++.+|+.+....|++|||||+|.+++.+.........++..+++..++++.. ..+++||++||.++.+|+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~ 164 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 164 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCH
T ss_pred hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCH
Confidence 9999999999999999999999999999999999887766566778889999999998753 568999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhc
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 381 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 381 (757)
+++| ||+..+.++.|+.++|.+|++.+++..... .+.++..++..++||+++|+..+|++|++.++++..
T Consensus 165 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 165 AIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999 999999999999999999999998877653 567899999999999999999999999988887643
No 38
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.1e-34 Score=302.53 Aligned_cols=253 Identities=38% Similarity=0.708 Sum_probs=217.2
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM 504 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~ 504 (757)
.+...|++++|++.+++.+.+.+.+ +.+++.+..++...+++++|+||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4678899999999999999988765 667888888899999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCC-CCCCcchHHHHHHHHHhhcCCCC-CCeEEEEeeCCCCCC
Q 004384 505 WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSV-GDAGGAADRVLNQLLTEMDGMSA-KKTVFIIGATNRPDI 582 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~-~~~~~~~~~~~~~ll~~ld~~~~-~~~v~vi~tTn~~~~ 582 (757)
|.|.++..++.+|+.+....|++|||||+|.+...+..+. ........+++++|+..|++... ..+++||+|||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 9999988899999999999999999999999988763221 01112234567888999988754 345999999999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIE 662 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~ 662 (757)
+|++++|+|||+..++|++|+.++|.+||+.++++.++..++++..+++.+.||+|+||.++|++|+..|..+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999999888888899999999999999999999999988765432
Q ss_pred HHHhhcCCCccccccccccccccccHHHHHHHHhhcCCCCCH
Q 004384 663 RERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRSVSD 704 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s~~~ 704 (757)
...|+.+||..|++.+.|+...
T Consensus 238 --------------------~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 238 --------------------QKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp --------------------CCSCCHHHHHTSCTTCCCCCC-
T ss_pred --------------------cCCcCHHHHHHHHHHHhhcchh
Confidence 2379999999999999887664
No 39
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.1e-32 Score=288.64 Aligned_cols=266 Identities=41% Similarity=0.732 Sum_probs=225.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||+|++++++++++.+.+|+.+|+.|.++++.++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.+.|+.+..++.+|+.+....|+++||||+|.+...++.. .+....++..+|+..++++....+++||++||.++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 9999988899999999999999999999999998754321 1123346778899999988777789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
++++.|++||+..++++.|+.++|.+|++.+++...+..+.++..++..++||+++|+..+|++|+..++++........
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999888877778899999999999999999999999988876543211000
Q ss_pred ch-------hhhH-HHhhhcccchhhhhhhhccCCCC
Q 004384 388 DE-------TIDA-EILNSMAVSNEHFQTALGTSNPS 416 (757)
Q Consensus 388 ~~-------~~~~-~~~~~~~~~~~~~~~al~~~~p~ 416 (757)
.. .... .......++.+||..|+....|+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s 284 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCCCS
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcCCC
Confidence 00 0000 00112457889999999988765
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=3.5e-31 Score=283.42 Aligned_cols=264 Identities=36% Similarity=0.643 Sum_probs=220.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|++|+|+++.++.|++++.+|+.+|+++.. +..++.++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 89 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 89 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh
Confidence 457889999999999999999999999999998877 5567889999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-CCCeEEEEEecCCCCCCCH
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~v~vI~atn~~~~ld~ 309 (757)
.+.|+.+..++.+|+.+....|++|||||+|.+...+.........++..+++..++++. ...+++||++||.++.+++
T Consensus 90 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~ 169 (322)
T 3eie_A 90 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 169 (322)
T ss_dssp TTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCH
Confidence 999999999999999999999999999999999987755444455778889999998874 4568999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccc
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 388 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 388 (757)
++++ ||+..++++.|+.++|.+|++.+++..... .+.++..++..++||+++|+..+|++|.+.++++.........
T Consensus 170 al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~ 247 (322)
T 3eie_A 170 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 247 (322)
T ss_dssp HHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEE
T ss_pred HHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999 999999999999999999999998877643 5678999999999999999999999999888876543211100
Q ss_pred --------------------------hhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 389 --------------------------ETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 389 --------------------------~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
..+..+......++.+||..++..+.|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 302 (322)
T 3eie_A 248 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 302 (322)
T ss_dssp CC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSS
T ss_pred hccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCC
Confidence 00001111224588889988888887764
No 41
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=8.7e-31 Score=283.63 Aligned_cols=264 Identities=36% Similarity=0.629 Sum_probs=215.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++++|+||+|+++.++.|++.+.+|+.+|++|.. +..++.++||+||||||||+||+++|.+++.+++.++++++.+
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~ 122 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh
Confidence 346789999999999999999999999999999886 5677889999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCCH
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~v~vI~atn~~~~ld~ 309 (757)
.+.|..+..++.+|..+....|+||||||+|.+.+.+.........++..+|+..++++.. ..+++||++||.++.+++
T Consensus 123 ~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~ 202 (355)
T 2qp9_X 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDS 202 (355)
T ss_dssp CC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCH
T ss_pred hhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCH
Confidence 9999999999999999999999999999999999877655556677888999999998754 467999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc--
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL-- 386 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~-- 386 (757)
++++ ||+..+.++.|+.++|.+|++.+++..... .+.++..++..++||+++|+..+|++|++.++++.......
T Consensus 203 al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~ 280 (355)
T 2qp9_X 203 AIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 280 (355)
T ss_dssp HHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999 999999999999999999999998877643 56789999999999999999999999999888764321100
Q ss_pred ------------------------cchhhhHHHhhhcccchhhhhhhhccCCCCC
Q 004384 387 ------------------------EDETIDAEILNSMAVSNEHFQTALGTSNPSA 417 (757)
Q Consensus 387 ------------------------~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~ 417 (757)
....+.........++.+||..|+..+.|+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~ 335 (355)
T 2qp9_X 281 VSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTV 335 (355)
T ss_dssp CCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSS
T ss_pred hccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCC
Confidence 0000111112234588899999999888763
No 42
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.97 E-value=4.3e-31 Score=317.89 Aligned_cols=460 Identities=23% Similarity=0.333 Sum_probs=277.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++++.|.++.+.++.+++.. ....+++|+||||||||++++.+|..+ +..++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 345788999999998888877643 234579999999999999999999987 788999
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 223 INGPEIM--SKLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 223 v~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
+++..+. ..+.|+.+..+..+|..+... .++||||||+|.+.+....... ..+.+.|...+. ...+.+|+
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~----~~~i~~I~ 304 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RGELRLIG 304 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TTCCCEEE
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh----CCCeEEEE
Confidence 9988876 467788889999999998875 6899999999999865432211 122233444443 34677888
Q ss_pred ecCCCC----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC------CCCCCchhhhHHhHhcC-----CCchhH
Q 004384 300 ATNRPN----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN------MKLSDDVDLERIAKDTH-----GYVGAD 364 (757)
Q Consensus 300 atn~~~----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~l~~~~~l~~la~~t~-----g~~~~d 364 (757)
+|+.++ .+++++.+ ||.. +.++.|+.+++.+|++.+... ..+. +..+..++..++ +|.+..
T Consensus 305 at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~-~~al~~~~~ls~r~i~~~~lp~k 380 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRIS-DSAIIAAATLSHRYITERRLPDK 380 (854)
T ss_dssp EECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEEC-HHHHHHHHHHHHHHCCSSCTHHH
T ss_pred ecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCC-HHHHHHHHHHHhhhcccccChHH
Confidence 888664 47899988 8975 999999999999999865442 2222 233555555543 445555
Q ss_pred HHHHHHHHHHHHHHhhccc--------------------ccccc-------------h--h-----------hhHHH--h
Q 004384 365 LAALCTEAALQCIREKMDV--------------------IDLED-------------E--T-----------IDAEI--L 396 (757)
Q Consensus 365 l~~l~~~a~~~~~~~~~~~--------------------~~~~~-------------~--~-----------~~~~~--~ 396 (757)
...++.+++.......... ...+. + . +..+. .
T Consensus 381 ai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (854)
T 1qvr_A 381 AIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREIL 460 (854)
T ss_dssp HHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666655543322110000 00000 0 0 00000 0
Q ss_pred h--------------------------------------------------------hcccchhhhhhhhccCCCC---C
Q 004384 397 N--------------------------------------------------------SMAVSNEHFQTALGTSNPS---A 417 (757)
Q Consensus 397 ~--------------------------------------------------------~~~~~~~~~~~al~~~~p~---~ 417 (757)
. ...+..+++...+...... .
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~~~~~ip~~~ 540 (854)
T 1qvr_A 461 RKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVSRWTGIPVSK 540 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHHHHhCCChHh
Confidence 0 0001111111111110000 0
Q ss_pred c----eeeeeeccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---C
Q 004384 418 L----RETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---Q 490 (757)
Q Consensus 418 ~----~~~~~~~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~ 490 (757)
+ .......+..-|.+++|.+.+.+.+...+...... +.. .-.|..++||+||||||||++|+++|..+ +
T Consensus 541 ~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g---~~~-~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~ 616 (854)
T 1qvr_A 541 LLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE 616 (854)
T ss_dssp TTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGG---CSC-SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG
T ss_pred hcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcc---cCC-CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 0 00000011112456778887777776665421100 000 01223469999999999999999999998 7
Q ss_pred CceEEEeCcccccc------------ccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHH
Q 004384 491 ANFISVKGPELLTM------------WFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQL 558 (757)
Q Consensus 491 ~~~i~v~~~~l~~~------------~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~l 558 (757)
.+|+.++++++... |+|..+ .+.+....+..++++||||||+.+ ...+++.|
T Consensus 617 ~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l--------------~~~~~~~L 680 (854)
T 1qvr_A 617 EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKA--------------HPDVFNIL 680 (854)
T ss_dssp GGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEESSGGGS--------------CHHHHHHH
T ss_pred CcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEeccccc--------------CHHHHHHH
Confidence 79999999877543 333322 133444555566799999999875 35788999
Q ss_pred HHhhcCCC---------CCCeEEEEeeCCCC--------------------------CCCCccccCCCccceEEEecCCC
Q 004384 559 LTEMDGMS---------AKKTVFIIGATNRP--------------------------DIIDPALLRPGRLDQLIYIPLPD 603 (757)
Q Consensus 559 l~~ld~~~---------~~~~v~vi~tTn~~--------------------------~~ld~allrpgRf~~~i~~~~p~ 603 (757)
++.|+... +..+++||+|||.. ..+.|+|+. ||+.++.|++|+
T Consensus 681 l~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~ 758 (854)
T 1qvr_A 681 LQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLT 758 (854)
T ss_dssp HHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCC
T ss_pred HHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCC
Confidence 99998532 12478899999972 245667776 999999999999
Q ss_pred HHHHHHHHHHhhccC-------CCCCccC---HHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 604 EDSRHQIFKACLRKS-------PVSKDVD---LRALAKYTQ--GFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 604 ~~~r~~Il~~~l~~~-------~~~~~~d---~~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
.++...|++.++++. .+...++ +..|++... .++.++++++++.+...++.+.+-
T Consensus 759 ~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 759 KEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888632 1111222 556666554 578899999999999888887654
No 43
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=2.7e-29 Score=278.68 Aligned_cols=246 Identities=44% Similarity=0.741 Sum_probs=213.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
.++++|+||+|+++.++.+++++.. +.+|..+.++++..++++||+||||||||+|++++|++.+.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 3567899999999999999999886 778899999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
+.|.....++.+|+.+....|+||||||+|.+..+++.. ......+.+.+|+..++++....+++||++||+++.+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 999888999999999999999999999999998876532 12234567788999999877777899999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLED 388 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~ 388 (757)
+++.|++||++.+.++.|+..+|.+|++.+++..++..+.++..++..+.||+++|+.++|.+|+..+.++..
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~------- 241 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR------- 241 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-------
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-------
Confidence 9999999999999999999999999999999988888888899999999999999999999999887765421
Q ss_pred hhhhHHHhhhcccchhhhhhhhccCCC
Q 004384 389 ETIDAEILNSMAVSNEHFQTALGTSNP 415 (757)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~al~~~~p 415 (757)
..++.+++..++....+
T Consensus 242 ----------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 ----------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ----------SSBCHHHHHHHHHHHC-
T ss_pred ----------CeecHHHHHHHHHHHhc
Confidence 23566677777665543
No 44
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=5.2e-30 Score=304.60 Aligned_cols=264 Identities=38% Similarity=0.684 Sum_probs=232.5
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMW 505 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~ 505 (757)
+.++|++|+|++.+++.|.+.+.+++.+++.|..+++.++.++||+||||||||++|+++|++++.+++.++++++.+.|
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~ 278 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCc
Q 004384 506 FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDP 585 (757)
Q Consensus 506 ~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~ 585 (757)
.|+.+..++.+|+.+....|+++|+||+|.++++++.. ......+++++|+..|++......+++|+|||+++.+|+
T Consensus 279 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC---CSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc---cchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 99999999999999999999999999999999887543 234568899999999999988889999999999999999
Q ss_pred cccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004384 586 ALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERER 665 (757)
Q Consensus 586 allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~ 665 (757)
++.|+|||++.++++.|+.++|.+||+.++++..+..+.++..++..+.||+++++..+|++|+..++++.........
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~- 434 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED- 434 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHH-
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhh-
Confidence 9999999999999999999999999999999999988999999999999999999999999999998876532110000
Q ss_pred hhcCCCccccccccccccccccHHHHHHHHhhcCCC
Q 004384 666 RRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARRS 701 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~s 701 (757)
... .........++.+||..++....|+
T Consensus 435 ------~~~--~~~~~~~~~v~~~d~~~al~~~~~s 462 (806)
T 1ypw_A 435 ------ETI--DAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp ------HHC--CHHHHTTCCCCTTHHHHHHHHSCCC
T ss_pred ------hcc--chhhhhhhhhhhhhhhccccccCch
Confidence 000 0000123468889999999888764
No 45
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=8.6e-30 Score=283.83 Aligned_cols=228 Identities=38% Similarity=0.684 Sum_probs=196.3
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-CCeEEEEechhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIM 229 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-~~~~~~v~~~~l~ 229 (757)
..++++|+||+|+++.++.|++.+.+|+.+|++|.. +..++.++||+||||||||+||+++|.++ +.+++.++++++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 456789999999999999999999999999998875 34677899999999999999999999999 8899999999999
Q ss_pred hhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCCCC
Q 004384 230 SKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNSID 308 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~v~vI~atn~~~~ld 308 (757)
+.+.|..+..++.+|+.+....|+||||||+|.+++.+.........++..+|+..++++.. ..+++||++||.++.++
T Consensus 206 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld 285 (444)
T 2zan_A 206 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLD 285 (444)
T ss_dssp ------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSC
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccC
Confidence 99999888889999999999999999999999998877655556667888999999988753 56899999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKM 381 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~ 381 (757)
++++| ||+..+.++.|+.++|..|++.+++.... ..+.++..++..+.||+++|+..+|++|++.++++..
T Consensus 286 ~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 286 SAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999999999999999887664 3567899999999999999999999999998887643
No 46
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=1.7e-28 Score=258.16 Aligned_cols=230 Identities=56% Similarity=0.934 Sum_probs=206.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..+++.|++++|+++++++|++.+..++.+++.++.+++.++.++||+||||||||++++++|+.++.+++.+++.++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.+.+.....+..+|..+....|++|||||+|.+.+++.... .....+.+..++..++++....++++|++||.++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l 169 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDIL 169 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGB
T ss_pred hccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhc
Confidence 99999999999999999999999999999999987765432 222344556667777777777789999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhh
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREK 380 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~ 380 (757)
++++.+++||+..+.++.|+.++|.+|++.+++...+..+.++..++..+.||+++++..+|.+|...++.+.
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999988888777889999999999999999999999998887654
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.7e-28 Score=252.61 Aligned_cols=227 Identities=44% Similarity=0.746 Sum_probs=198.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
.++.+|+||+|+++.++++++++.. +.+++.++.++...+.+++|+|||||||||+++++++.++.+++.+++.++...
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 4567899999999999999998876 778888888898999999999999999999999999999999999999999888
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCC
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSID 308 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld 308 (757)
+.+.....++.+|+.+....|+++|+||+|.+...+... ......+.+.+++..++++....+++||++||.++.++
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~ 164 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 164 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCC
Confidence 888888999999999998889999999999998765432 12233467788888899887778899999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
+++.+++||+..+.++.|+.++|.+|++.+++..++..+.++..++..+.||+++++..+|.+|+..+..+
T Consensus 165 ~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235 (257)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888877778889999999999999999999998877654
No 48
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=3.7e-28 Score=271.07 Aligned_cols=245 Identities=41% Similarity=0.703 Sum_probs=213.3
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
++++|+||+|+++.+..+++++.. +.++..+.++++..+++++|+||||||||+|++++|++++.+++.+++.++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 577899999999999999999876 6788899999999999999999999999999999999999999999999998888
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCH
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~ 309 (757)
.+.....++.+|+.+....|+++||||+|.+...++.. ..+...+.+.+++..|++......++++++||+|+.+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 88888889999999988889999999999998765421 123335667888889998877778999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccch
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDE 389 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~ 389 (757)
++.|++||++.+.++.|+..+|.+|++.+++...+.++.++..++..+.||+++|+..+|.+|+..+.++.
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~--------- 255 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG--------- 255 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC---------
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC---------
Confidence 99999999999999999999999999999988888888889999999999999999999999987665432
Q ss_pred hhhHHHhhhcccchhhhhhhhccCCC
Q 004384 390 TIDAEILNSMAVSNEHFQTALGTSNP 415 (757)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~al~~~~p 415 (757)
...++.+++..++....+
T Consensus 256 --------~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 256 --------RRKITMKDLEEAADRVMM 273 (499)
T ss_dssp --------CSSCCSHHHHHHHHHHTT
T ss_pred --------CCccCHHHHHHHHHHHhc
Confidence 123666777777766544
No 49
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.95 E-value=4.4e-27 Score=243.02 Aligned_cols=228 Identities=44% Similarity=0.755 Sum_probs=197.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++.+|++++|+++.+..++++... +.++..+.++++..+++++|+||||||||||++++++.++..++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34678999999999999999988765 66788899999999999999999999999999999999999999999998888
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.+.+.....++.+|+.+....|+++++||+|.+...+... ......+.+.+++..+++......+++++++|.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 7778778889999999987889999999999987655321 1223355677888888887777778999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
|+++.|++||+..++++.|+.++|.+|++.+.+...+..+.++..++..++||+++|+..+|.+|+..+..+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~ 239 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999988888888888999999999999999999999998877653
No 50
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=4.9e-27 Score=243.63 Aligned_cols=225 Identities=42% Similarity=0.708 Sum_probs=179.8
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhcc
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLA 233 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~ 233 (757)
+++|++|+|+++.++.+++++.. +.+++.+..+++..+.++||+||||||||++|+++|++++.+++.+++.++...+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 57899999999999999999887 78888899999999999999999999999999999999999999999999988888
Q ss_pred chhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc----hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCH
Q 004384 234 GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 234 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~ 309 (757)
+.....++.+|+.+....|++|||||+|.+...+.... .......+..++..+++.....++++|++||.++.+++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 88888899999999998999999999999987653321 11223455677777887766678999999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCch--hhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDV--DLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~--~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
++.+++||+..++++.|+.++|.+|++.+++...+..+. .+..++..+.||+++++..++.+|+..+..+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~ 232 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999988776655443 3478999999999999999999988766543
No 51
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=3.5e-27 Score=249.62 Aligned_cols=260 Identities=37% Similarity=0.583 Sum_probs=210.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++.+|++++|+++.++.+++.+..|+.+|+++..++ .++.++||+||||||||++|+++++.++.+++.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~ 92 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS 92 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh
Confidence 34678999999999999999999999999999887665 46789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCC---CeEEEEEecCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR---AHVIVIGATNRPNSI 307 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~---~~v~vI~atn~~~~l 307 (757)
.+.+.....++.+|..+....|++|||||+|.+...+.....+...++...++..+++.... ..++||++||.++.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l 172 (297)
T 3b9p_A 93 KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQEL 172 (297)
T ss_dssp SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGB
T ss_pred cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhC
Confidence 88898889999999999999999999999999988765433333456667788888876543 468999999999999
Q ss_pred CHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 308 DPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 308 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
++++.+ ||+..+.++.|+.++|..|++.+++.... ..+..+..++..+.||+++++..+|++|+..++++.......
T Consensus 173 ~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~ 250 (297)
T 3b9p_A 173 DEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVK 250 (297)
T ss_dssp CHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-----
T ss_pred CHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999998 99999999999999999999988776543 245578999999999999999999999988877654211100
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccCCCCCc
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTSNPSAL 418 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~ 418 (757)
.. .......++.+||..++....|+..
T Consensus 251 ---~~--~~~~~~~i~~~d~~~a~~~~~~s~~ 277 (297)
T 3b9p_A 251 ---CL--DISAMRAITEQDFHSSLKRIRRSVA 277 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSCCCSSC
T ss_pred ---cc--cccccCCcCHHHHHHHHHHcCCCCC
Confidence 00 0011235888999999988877643
No 52
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=251.41 Aligned_cols=260 Identities=36% Similarity=0.615 Sum_probs=211.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..++.+|++|+|++++++.|++.+.+|+.+++++...+ .++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 45678999999999999999999999999998887654 67789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC--CCeEEEEEecCCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 308 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~--~~~v~vI~atn~~~~ld 308 (757)
.+.+..+..++.+|..+....|++|||||+|.+...+.........++..+++..+++... ...++||++||.++.++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEID 235 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCC
Confidence 9999999999999999999999999999999998876544445566778888888887642 45799999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
+++++ ||...+.++.|+.++|.+++..+++..... .+..+..++..+.||+++++..+|.+|...++++......
T Consensus 236 ~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~-- 311 (357)
T 3d8b_A 236 EAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADI-- 311 (357)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC-----
T ss_pred HHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhh--
Confidence 99998 999999999999999999999887664432 4567899999999999999999999998887765321110
Q ss_pred chhhhHHHhhhcccchhhhhhhhccCCCCCc
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTSNPSAL 418 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~ 418 (757)
... .......++.+||..++....|+..
T Consensus 312 -~~~--~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 312 -ATI--TPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ----------CCCBCHHHHHHHHHHHGGGCC
T ss_pred -ccc--cccccCCcCHHHHHHHHHhcCCCCC
Confidence 000 0012345788899999888877543
No 53
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=8.9e-28 Score=253.07 Aligned_cols=176 Identities=22% Similarity=0.328 Sum_probs=141.4
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHH----HhCCCeEEEEecccch
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKA----RQSAPCVLFFDELDSI 536 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a----~~~~p~il~iDEid~l 536 (757)
+.+++.++||+||||||||++|+++|.+++.+|+.++++++.+.|+|+++..++.+|+.| +...||||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567788999999999999999999999999999999999999999999999999999999 5778999999999999
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHH
Q 004384 537 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDED 605 (757)
Q Consensus 537 ~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~ 605 (757)
.++++... .......++.+.|++.||+.. ...+++||+|||+++.||++++|||||+..|++ |+.+
T Consensus 112 ~~~~~~~~-~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~~~ 188 (293)
T 3t15_A 112 AGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 188 (293)
T ss_dssp -------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CCHH
T ss_pred cCCCCCCc-cccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cCHH
Confidence 98654321 112245678899999998543 456899999999999999999999999999974 6999
Q ss_pred HHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHH
Q 004384 606 SRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITE 643 (757)
Q Consensus 606 ~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~ 643 (757)
+|.+|++.++... ++++..+++.+++|+|++|..
T Consensus 189 ~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 189 DRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 9999999888643 567899999999999999874
No 54
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=6.7e-26 Score=237.38 Aligned_cols=226 Identities=44% Similarity=0.762 Sum_probs=195.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhc
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKL 232 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~ 232 (757)
++.+|++++|+++.++.++++... +.++..+.++++..+.+++|+||||||||||++++++.++..++.+++.++...+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 678899999999999999988765 5677889999999889999999999999999999999999999999999888777
Q ss_pred cchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCH
Q 004384 233 AGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDP 309 (757)
Q Consensus 233 ~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~ 309 (757)
.+.....+..+|+.+....|+++|+||++.+...+... ......+.+.+++..+++......+++++++|.|+.+|+
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~ 193 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 193 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence 77777889999999988889999999999887654321 122234566777888887766667899999999999999
Q ss_pred HhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 310 ALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 310 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
++.|++||+..++++.|+.++|.+|++.+.+...+..+.++..++..++||+++|+..+|.+|+..+..+
T Consensus 194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~ 263 (278)
T 1iy2_A 194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263 (278)
T ss_dssp HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999988888877888999999999999999999999998776543
No 55
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=246.86 Aligned_cols=258 Identities=36% Similarity=0.573 Sum_probs=200.7
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
..+++.|++|+|++.+++.|.+++.+++.+++++..++ .++.++||+||||||||++|+++|..++.+++.+++.++.+
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 45677899999999999999999999999998888765 45789999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC--CCeEEEEEecCCCCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS--RAHVIVIGATNRPNSID 308 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~--~~~v~vI~atn~~~~ld 308 (757)
.+.+..+..++.+|..+....|++|||||+|.++..+.........++...|+..+++... ...++||++||.++.++
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELD 266 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCC
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcC
Confidence 9999999999999999999999999999999998776544444567778888888887654 35799999999999999
Q ss_pred HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhccccccc
Q 004384 309 PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLE 387 (757)
Q Consensus 309 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~ 387 (757)
+++++ ||...+.++.|+.++|.+|++.++..... ..+..+..++..+.||+++++..++..+...++++........
T Consensus 267 ~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~ 344 (389)
T 3vfd_A 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKN 344 (389)
T ss_dssp HHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---C
T ss_pred HHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 99998 99999999999999999999988766433 2345789999999999999999999999887776532211000
Q ss_pred chhhhHHHhhhcccchhhhhhhhccCCCC
Q 004384 388 DETIDAEILNSMAVSNEHFQTALGTSNPS 416 (757)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~al~~~~p~ 416 (757)
. .......++.+||..++....++
T Consensus 345 ---~--~~~~~~~i~~~d~~~al~~~~~s 368 (389)
T 3vfd_A 345 ---M--SASEMRNIRLSDFTESLKKIKRS 368 (389)
T ss_dssp ---C--SSSCCCCCCHHHHHHHHHHCCCS
T ss_pred ---c--chhhcCCcCHHHHHHHHHHcCCC
Confidence 0 00012346778888887776554
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.93 E-value=5.9e-27 Score=262.33 Aligned_cols=360 Identities=20% Similarity=0.249 Sum_probs=235.9
Q ss_pred CCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC--CeEEEEechhhhhh
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG--AFFFCINGPEIMSK 231 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~--~~~~~v~~~~l~~~ 231 (757)
...|++++|+++.++.+.+++... ..+..++.++||+||||||||++|+++|.+++ .+++.++++++.+.
T Consensus 33 ~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 33 KQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp CSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 446899999999999988877541 12455778999999999999999999999999 89999999999999
Q ss_pred ccchhHHHHHHHHHHH---HhcCCeEEEEcccccccCCCCCCchH-HH---H---------------HHHHHHHHHhh--
Q 004384 232 LAGESESNLRKAFEEA---EKNAPSIIFIDEIDSIAPKREKTHGE-VE---R---------------RIVSQLLTLMD-- 287 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a---~~~~p~il~iDEid~l~~~~~~~~~~-~~---~---------------~~~~~Ll~~l~-- 287 (757)
+.++.+. ++.+|+.+ ....|++||+||+|.+++++...... .. . ++...++..++
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 89999999 77889999999999999887543211 00 0 01122444443
Q ss_pred cccCCCeEEEEEecCCCCCCCHHhhccCCcce--EEEeCCCC--HHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchh
Q 004384 288 GLKSRAHVIVIGATNRPNSIDPALRRFGRFDR--EIDIGVPD--EVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGA 363 (757)
Q Consensus 288 ~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~--~i~i~~p~--~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~ 363 (757)
+......++|+++||.++.+|+++.|++||+. .+.++.|+ ...|.+|++.+.. .+++.++..++| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 23334456666899999999999999999998 55666664 4677777654332 268888999998 88
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhhhhccCCCCCceeeeeeccCCccccccchhhHHHHh
Q 004384 364 DLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKREL 443 (757)
Q Consensus 364 dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l 443 (757)
|+.++|.....-. . ..+.. .+.+.
T Consensus 255 dl~~l~~~i~~p~--~------------------------~~I~~-----------------------------~lr~~- 278 (456)
T 2c9o_A 255 DILSMMGQLMKPK--K------------------------TEITD-----------------------------KLRGE- 278 (456)
T ss_dssp -----------------------------------------------------------------------------CH-
T ss_pred HHHHHHhhhcccc--h------------------------hhHHH-----------------------------HHHHH-
Confidence 8887764311000 0 00000 00000
Q ss_pred hhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHh-
Q 004384 444 QETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQ- 522 (757)
Q Consensus 444 ~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~- 522 (757)
+.+ .+...++....
T Consensus 279 -------------------------------------I~~----------------------------~l~~~~~~g~~~ 293 (456)
T 2c9o_A 279 -------------------------------------INK----------------------------VVNKYIDQGIAE 293 (456)
T ss_dssp -------------------------------------HHH----------------------------HHHHHHHTTSEE
T ss_pred -------------------------------------HHH----------------------------HHHHHHHhcccc
Confidence 000 00111111110
Q ss_pred CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee---------CC---CCCCCCccccCC
Q 004384 523 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA---------TN---RPDIIDPALLRP 590 (757)
Q Consensus 523 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t---------Tn---~~~~ld~allrp 590 (757)
..|.|+||||+|.+. ....+.|+..|+.... .++|++| |+ .|+.|+|.+++
T Consensus 294 v~~~VliIDEa~~l~--------------~~a~~aLlk~lEe~~~--~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s- 356 (456)
T 2c9o_A 294 LVPGVLFVDEVHMLD--------------IECFTYLHRALESSIA--PIVIFASNRGNCVIRGTEDITSPHGIPLDLLD- 356 (456)
T ss_dssp EEECEEEEESGGGCB--------------HHHHHHHHHHTTSTTC--CEEEEEECCSEEECBTTSSCEEETTCCHHHHT-
T ss_pred ccceEEEEechhhcC--------------HHHHHHHHHHhhccCC--CEEEEecCCccccccccccccccccCChhHHh-
Confidence 112599999999972 5678999999987544 3655566 33 27788888998
Q ss_pred CccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004384 591 GRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYT-QGFSGADITEICQRACKYAIRENIEKDIERERRRR 668 (757)
Q Consensus 591 gRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~-~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~ 668 (757)
||.. +.|++|+.++..+|++..+......- +..+..+++.+ .| +.+...++++.|...|..+.
T Consensus 357 -R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~~~------------ 421 (456)
T 2c9o_A 357 -RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKING------------ 421 (456)
T ss_dssp -TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHHTT------------
T ss_pred -hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhhcC------------
Confidence 9986 69999999999999998876544321 22355667666 54 78888888888877766543
Q ss_pred CCCccccccccccccccccHHHHHHHHhhc
Q 004384 669 DNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 669 ~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|+.+|+.+|+..+
T Consensus 422 --------------~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 422 --------------KDSIEKEHVEEISELF 437 (456)
T ss_dssp --------------CSSBCHHHHHHHHHHS
T ss_pred --------------CCccCHHHHHHHHHHh
Confidence 2479999999999876
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=2e-27 Score=247.66 Aligned_cols=249 Identities=43% Similarity=0.693 Sum_probs=202.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
.++..|++++|+++.++.+++++.. +.+++.+.+++...+.++||+||||||||++|+++|+.++.+++.+++.++...
T Consensus 5 ~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 5 KPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 4567899999999999999998886 788999999999999999999999999999999999999999999999988888
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc----hHHHHHHHHHHHHHhhcccC-CCeEEEEEecCCCCC
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH----GEVERRIVSQLLTLMDGLKS-RAHVIVIGATNRPNS 306 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~----~~~~~~~~~~Ll~~l~~~~~-~~~v~vI~atn~~~~ 306 (757)
+.+.....++.+|+.+....|++|||||+|.+...+.... .....+.+.+|+..+++... ...++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 7777766778889999888999999999999987642110 00011223456666665543 245899999999999
Q ss_pred CCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccc
Q 004384 307 IDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDL 386 (757)
Q Consensus 307 ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~ 386 (757)
+++++.+++||+..+.++.|+.++|.++++.+++.+.+..+.++..++..+.||+++++..++.+|+..+....
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~------ 237 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN------ 237 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC------
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------
Confidence 99999999999999999999999999999999988877777788999999999999999999999887553221
Q ss_pred cchhhhHHHhhhcccchhhhhhhhccCCCCCc
Q 004384 387 EDETIDAEILNSMAVSNEHFQTALGTSNPSAL 418 (757)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~~ 418 (757)
...++.+++..++....|+..
T Consensus 238 -----------~~~i~~~~~~~a~~~~~~~~~ 258 (268)
T 2r62_A 238 -----------QKEVRQQHLKEAVERGIAGLE 258 (268)
T ss_dssp -----------CCSCCHHHHHTSCTTCCCCCC
T ss_pred -----------cCCcCHHHHHHHHHHHhhcch
Confidence 123667777777777666543
No 58
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.93 E-value=1.4e-25 Score=219.09 Aligned_cols=162 Identities=73% Similarity=1.371 Sum_probs=138.9
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEG 80 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (757)
|++|||.+||+|+|+|++++.++|++||.++++.+.|+||+.+|+|+|+++||.|+|+++..++.|++|+|.|..+++.+
T Consensus 49 m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~ 128 (211)
T 3qwz_A 49 MDELQLFRGDTVLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 128 (211)
T ss_dssp HHHHTCCBTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBCSEEEEEEBGGGCTT
T ss_pred HHHcCCCCCCEEEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccCcchhc
Confidence 78999999999999999888999999998899999999999999999999999999999867899999999999877666
Q ss_pred cchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCCCCccccc-ccCCCCCccc
Q 004384 81 VTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDE-DRLDEVGYDD 159 (757)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (757)
+.++.+..+|+++|....+||.+||.|.+...++.+.|+|++++|.++++|+++|.|.+.++|+.++.. ..++.++|+|
T Consensus 129 i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~g~viV~~~T~I~~~~~pv~~~~~e~~~~~VtYeD 208 (211)
T 3qwz_A 129 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDD 208 (211)
T ss_dssp CCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESSSEEEECTTCEEECCSCCBCCCGGGSCCC------
T ss_pred cCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCCCCEEECCCcEEEEcCcccccccccccCCCcceeC
Confidence 666678889999997668999999999998777889999999999999999999999999999876532 3678899999
Q ss_pred ccC
Q 004384 160 VGG 162 (757)
Q Consensus 160 i~G 162 (757)
|||
T Consensus 209 IGG 211 (211)
T 3qwz_A 209 IGG 211 (211)
T ss_dssp ---
T ss_pred CCC
Confidence 998
No 59
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.92 E-value=3.9e-24 Score=233.70 Aligned_cols=170 Identities=24% Similarity=0.298 Sum_probs=84.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCC-CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK-PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 235 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~-~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~g~ 235 (757)
++|+|+++.++.+...+..+++++.++..+... ++.++||+||||||||++++++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 469999999999999988777777666555433 5678999999999999999999999999999999988877 58884
Q ss_pred -hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe-cCCCCCCCHHhhc
Q 004384 236 -SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA-TNRPNSIDPALRR 313 (757)
Q Consensus 236 -~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~a-tn~~~~ld~~l~r 313 (757)
.+..++.+|+.+... +++||++.+... .....+++++.+|+..|+++.....+ +++ ||+++.+|++++|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~---~~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~r 165 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR---AEDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLRE 165 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc---chhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHc
Confidence 788999999988765 358888776533 34556789999999999998765554 444 9999999999999
Q ss_pred cCCcceEEEeCCCCHH-HHHHHHH
Q 004384 314 FGRFDREIDIGVPDEV-GRLEVLR 336 (757)
Q Consensus 314 ~~rf~~~i~i~~p~~~-~r~~il~ 336 (757)
++||++.|+++.|+.. .|.+|+.
T Consensus 166 ggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 166 GQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ------------------------
T ss_pred CCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999987 6777764
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.6e-26 Score=258.86 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=147.9
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC--CceEEEeCccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT 503 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~ 503 (757)
|...|++++|++++++.+...+... ..+..+++++||+||||||||++|+++|.+++ .+|+.++++++.+
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~--------~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELI--------KSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHH--------HTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred hhhchhhccCHHHHHHHHHHHHHHH--------HhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 4567999999999999888766421 22556778999999999999999999999998 8999999999999
Q ss_pred cccCchhHHHHHHHHHH---HhCCCeEEEEecccchhcccCCCCCCCC-cc---------------hHHHHHHHHHhhc-
Q 004384 504 MWFGESEANVREIFDKA---RQSAPCVLFFDELDSIATQRGSSVGDAG-GA---------------ADRVLNQLLTEMD- 563 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a---~~~~p~il~iDEid~l~~~r~~~~~~~~-~~---------------~~~~~~~ll~~ld- 563 (757)
+|+|+++. ++.+|+.| +...|||+||||+|.+++.|+....... .. ..++.++++..|+
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999998 99999999 8888999999999999998865421110 00 1123344666665
Q ss_pred -CCCCCCeEEEEeeCCCCCCCCccccCCCccce--EEEecCCC--HHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCH
Q 004384 564 -GMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ--LIYIPLPD--EDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSG 638 (757)
Q Consensus 564 -~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~--~i~~~~p~--~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg 638 (757)
++...+.++|++|||+++.+|+++.||||||+ .+++|.|+ .++|.+|++.+.. .|++.+++.+.| |
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--g 253 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--G 253 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC--------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--h
Confidence 44555667778999999999999999999998 67788885 4778888876553 278999999999 9
Q ss_pred HHHHHHHHH
Q 004384 639 ADITEICQR 647 (757)
Q Consensus 639 ~di~~~~~~ 647 (757)
+||.++|..
T Consensus 254 adl~~l~~~ 262 (456)
T 2c9o_A 254 QDILSMMGQ 262 (456)
T ss_dssp ---------
T ss_pred hHHHHHHhh
Confidence 999999954
No 61
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.89 E-value=1.3e-24 Score=268.66 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=113.4
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCC----------hhhhhh------cccC----------CCCc--eeeecCCCC
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEH----------PEKFEK------FGMS----------PSKG--VLFYGPPGC 476 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~----------~~~~~~------~~~~----------~~~g--ilL~GppGt 476 (757)
.+.+.|++++|++++|+.+.+.+.||+++ ++.++. .|.. +|+| +++||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999988844 445554 2332 4455 999999999
Q ss_pred ChhHHHHHHHHHhC---CceEEEeCcc----cc--------ccccCc----hhHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 477 GKTLLAKAIANECQ---ANFISVKGPE----LL--------TMWFGE----SEANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 477 GKT~la~~la~~~~---~~~i~v~~~~----l~--------~~~~g~----~e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
|||+||++++.+.. .+.+.++..+ ++ ++|+++ +|+.++.+|..|++.+||++|+||+|+|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 99999999998774 3444444444 33 778888 89999999999999999999999999999
Q ss_pred cccC---CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 538 TQRG---SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 538 ~~r~---~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
+.+. ...+...+...|+++++|.+|++.....+|+|| +||+.
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eeccc
Confidence 9843 222111267889999999999998877888888 77763
No 62
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.89 E-value=5.8e-23 Score=197.04 Aligned_cols=142 Identities=74% Similarity=1.378 Sum_probs=127.2
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccC
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEG 80 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~ 80 (757)
|++|||.+||+|+|+|++++.++|++||..+++.+.|+||+.+|+|+|+++||.|+|+++..++.|++|++.|.++++.+
T Consensus 46 m~~Lgl~~GD~V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A~~V~LaP~~~~i~~ 125 (187)
T 3tiw_A 46 MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEG 125 (187)
T ss_dssp HHHHTCCTTCEEEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEECSEEEEEECCCC---
T ss_pred HHHcCCCCCCEEEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCceEEEEeccccchhh
Confidence 78999999999999999888999999998899999999999999999999999999999867889999999999776655
Q ss_pred cchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecCC
Q 004384 81 VTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGE 142 (757)
Q Consensus 81 ~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~~ 142 (757)
+.++.+..+|+++|...++||.+||.|.+...++.+.|+|++++|.++++|+++|.|.|+++
T Consensus 126 i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~~~v~V~~~T~I~~eg~ 187 (187)
T 3tiw_A 126 ITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGE 187 (187)
T ss_dssp --CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESSSEEECCTTCEEECCC-
T ss_pred ccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCCCCEEECCCcEEEecCC
Confidence 66667888999999766799999999999888889999999999999999999999998763
No 63
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=7.8e-22 Score=209.65 Aligned_cols=216 Identities=21% Similarity=0.280 Sum_probs=169.4
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCC---CCceeeecCCCCChhHHHHHHHHHh-------CCceEEEeCc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSP---SKGVLFYGPPGCGKTLLAKAIANEC-------QANFISVKGP 499 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~---~~gilL~GppGtGKT~la~~la~~~-------~~~~i~v~~~ 499 (757)
+.+++|++++++.+.+.+.++. .+......|+.. ..++||+||||||||++|+++|..+ ..+++.++++
T Consensus 30 ~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 30 DRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 4479999999999998877543 234444555443 3459999999999999999999987 3489999999
Q ss_pred cccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 500 ELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 500 ~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
++.+.|+|.....+..+|..+. ++||||||+|.+...++. ......+++.|+..|+.. ..+++||++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~~--~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENN--RDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHHC--TTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhcC--CCCEEEEEeCCh
Confidence 9999999999999999998873 579999999999865432 234678899999999864 346788888887
Q ss_pred CC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCccC-HHHHHHH-------cCCCCHHHHHHHHH
Q 004384 580 PD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDVD-LRALAKY-------TQGFSGADITEICQ 646 (757)
Q Consensus 580 ~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d-~~~la~~-------~~g~sg~di~~~~~ 646 (757)
++ .++|++.+ ||+..++|++|+.+++.+|++.++++....-+.+ +..+++. ...-+++++.+++.
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 54 35799998 9999999999999999999999998766442222 4445554 22235899999999
Q ss_pred HHHHHHHHHHHH
Q 004384 647 RACKYAIRENIE 658 (757)
Q Consensus 647 ~a~~~a~~~~~~ 658 (757)
.|...+..+.+.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988877654
No 64
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.85 E-value=2.2e-21 Score=204.25 Aligned_cols=174 Identities=23% Similarity=0.307 Sum_probs=136.2
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccccc
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEIDSI 263 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid~l 263 (757)
+.+++.++||+||||||||+||+++|+.++.+++.++++++.+.+.|..+..++.+|..+ ....|+||||||+|.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 567789999999999999999999999999999999999999999999999999999988 4678999999999999
Q ss_pred cCCCCCCc--hHHHHHHHHHHHHHhhccc-----------CCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHH
Q 004384 264 APKREKTH--GEVERRIVSQLLTLMDGLK-----------SRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVG 330 (757)
Q Consensus 264 ~~~~~~~~--~~~~~~~~~~Ll~~l~~~~-----------~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~ 330 (757)
.+..+... ....+++...|+.++++.. ...+++||+|||.++.+|++++|++||+..+. .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 88543221 1134567788999987443 44579999999999999999999999998887 579999
Q ss_pred HHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHH
Q 004384 331 RLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAA 367 (757)
Q Consensus 331 r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~ 367 (757)
|.+|++.+... .+.+...++..+.+|+++++..
T Consensus 190 r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999977653 2445788899999999998864
No 65
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.83 E-value=7.2e-22 Score=215.83 Aligned_cols=169 Identities=20% Similarity=0.262 Sum_probs=82.9
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccC-CCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc-cccCc
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 508 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g~ 508 (757)
++|+|++++|+.|..++..++.+...+..+... +++++||+||||||||++|+++|..++.+|+.++++.+.+ .|+|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 468999999999998887665554444433322 4678999999999999999999999999999999999988 59995
Q ss_pred -hhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee-CCCCCCCCcc
Q 004384 509 -SEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-TNRPDIIDPA 586 (757)
Q Consensus 509 -~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t-Tn~~~~ld~a 586 (757)
.+..++.+|+.|... +++||++.+.... .+...++++++||++||++.....+ +++ ||+|+.||+|
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 799999999999875 3589988765332 2345689999999999999766554 455 9999999999
Q ss_pred ccCCCccceEEEecCCCHH-HHHHHH
Q 004384 587 LLRPGRLDQLIYIPLPDED-SRHQIF 611 (757)
Q Consensus 587 llrpgRf~~~i~~~~p~~~-~r~~Il 611 (757)
++||||||+.|++++|+.. .|.+||
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhh
Confidence 9999999999999999987 788876
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.82 E-value=6.9e-20 Score=199.60 Aligned_cols=220 Identities=20% Similarity=0.275 Sum_probs=163.3
Q ss_pred cCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCccccc
Q 004384 426 PNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLT 503 (757)
Q Consensus 426 ~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~ 503 (757)
|...|++++|.+.+++.+...... +. .+..+++++||+||||||||++|+++|..++. +|+.+++..+.+
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------IR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------HH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 455699999999998876554321 11 13344578999999999999999999999874 888888877554
Q ss_pred cccCc-------------------------------------------------hhHHHHHHHHHHHhC---------CC
Q 004384 504 MWFGE-------------------------------------------------SEANVREIFDKARQS---------AP 525 (757)
Q Consensus 504 ~~~g~-------------------------------------------------~e~~i~~lf~~a~~~---------~p 525 (757)
.+++. ....++..|..+... .|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 44333 234455555544331 26
Q ss_pred eEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC-----------CCCCCCCccccCCCccc
Q 004384 526 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-----------NRPDIIDPALLRPGRLD 594 (757)
Q Consensus 526 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT-----------n~~~~ld~allrpgRf~ 594 (757)
+|+||||+|.+. ....+.|+..++.... .+++++++ |.++.+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~--------------~~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD--------------IESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB--------------HHHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC--------------hHHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 799999999873 4566778877775432 45555554 458899999999 998
Q ss_pred eEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 004384 595 QLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEA 673 (757)
Q Consensus 595 ~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~ 673 (757)
. ++|++|+.+++.+|++..+.+.+..- +..+..+++.+.+.+++++.++|..|...|..+.
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~----------------- 314 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK----------------- 314 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-----------------
Confidence 6 89999999999999999987755432 2346778888876799999999999998886543
Q ss_pred ccccccccccccccHHHHHHHHhhc
Q 004384 674 MDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 674 ~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
...|+.+|+++++..+
T Consensus 315 ---------~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 315 ---------GTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ---------CSSBCHHHHHHHHHHS
T ss_pred ---------CCCCCHHHHHHHHHHh
Confidence 3479999999999874
No 67
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.82 E-value=8.9e-21 Score=216.00 Aligned_cols=232 Identities=21% Similarity=0.297 Sum_probs=155.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccC-CCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc--
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMS-PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-- 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~-~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-- 503 (757)
..-++++.|++++++.+.+.+... .+... ++..++|+||||||||++|+++|+.++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~--------~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQ--------KLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHH--------HHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHhccHHHHHHHHHHHHHHH--------HhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 445778999999999987664421 11111 3456999999999999999999999999999998876543
Q ss_pred -------cccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC---------
Q 004384 504 -------MWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--------- 567 (757)
Q Consensus 504 -------~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--------- 567 (757)
.|+|.....+...|..+....| ++||||||.+...+. ....+.||..||....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~ 217 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIE 217 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCC
Confidence 6788888888899998877776 999999999976432 2245677888875321
Q ss_pred ----CCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh-----ccCCCCC---ccC---HHHHHHH
Q 004384 568 ----KKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL-----RKSPVSK---DVD---LRALAKY 632 (757)
Q Consensus 568 ----~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l-----~~~~~~~---~~d---~~~la~~ 632 (757)
..+++||+|||+++.|++++++ ||+ +|+|++|+.+++.+|++.++ +...+.. .++ +..++..
T Consensus 218 ~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~ 294 (543)
T 3m6a_A 218 ETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY 294 (543)
T ss_dssp CCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH
T ss_pred eeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh
Confidence 1578999999999999999999 996 79999999999999999887 2233321 122 4444443
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 633 TQ-GFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 633 ~~-g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
.. ..+.+++++.+..++..|..+.+.. +.....|+.+|+.+++...+.
T Consensus 295 ~~~~~~vR~L~~~i~~~~~~aa~~~~~~--------------------~~~~~~It~~~l~~~Lg~~~~ 343 (543)
T 3m6a_A 295 YTREAGVRSLERQLAAICRKAAKAIVAE--------------------ERKRITVTEKNLQDFIGKRIF 343 (543)
T ss_dssp HCCCSSSHHHHHHHHHHHHHHHHHHHTT--------------------CCSCCEECTTTTHHHHCSCCS
T ss_pred CChhhchhHHHHHHHHHHHHHHHHHHhc--------------------CCcceecCHHHHHHHhCCccc
Confidence 33 2455666666666555554443211 112347999999999876543
No 68
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.79 E-value=3.2e-19 Score=189.32 Aligned_cols=245 Identities=20% Similarity=0.297 Sum_probs=166.4
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhc-ccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc-cccCc
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKF-GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT-MWFGE 508 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~-~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~-~~~g~ 508 (757)
+++.|++++++.+...+..+.......... .-..+.+++|+||||||||++|+++|..++.+++.++++++.. .|+|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 357899999998887765422111111100 1134568999999999999999999999999999999998876 67664
Q ss_pred h-hHHHHHHHHHH-----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCeEEEE
Q 004384 509 S-EANVREIFDKA-----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFII 574 (757)
Q Consensus 509 ~-e~~i~~lf~~a-----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~vi 574 (757)
. ...++.+|..+ ....++|+||||+|.+...+... ..+.....+.+.|+..|++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS--GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC--SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc--ccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 45567776633 11235799999999998765321 111223345788888888642 22467788
Q ss_pred ee----CCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhh-----------ccCCCC---CccCHHHHHHHc---
Q 004384 575 GA----TNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL-----------RKSPVS---KDVDLRALAKYT--- 633 (757)
Q Consensus 575 ~t----Tn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l-----------~~~~~~---~~~d~~~la~~~--- 633 (757)
++ ++.++.+++++++ ||+..++|++|+.+++.+|++..+ +..... .+..++.+++.+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 88 5678899999997 999999999999999999998421 112211 122355666655
Q ss_pred ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcC
Q 004384 634 ----QGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFAR 699 (757)
Q Consensus 634 ----~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~ 699 (757)
.+.+.+++.++|..+...+..+... .+.....|+.+|++++++...
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~--------------------~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASD--------------------MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGG--------------------CTTCEEEECHHHHHHHTCSSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCcc--------------------ccCCEEEEeeHHHHHHHHhhh
Confidence 2568889999888876655433210 011123599999999998763
No 69
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.78 E-value=1.2e-18 Score=181.66 Aligned_cols=178 Identities=23% Similarity=0.339 Sum_probs=135.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCch----hHHHHHHHHHHHhCCCeEEEEecccch
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGES----EANVREIFDKARQSAPCVLFFDELDSI 536 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~----e~~i~~lf~~a~~~~p~il~iDEid~l 536 (757)
+..++.++||+||||||||++|+++|..++.+|+.+++++. ++|.. ...++.+|+.+....+++|||||||.+
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK---MIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG---CTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH---hcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 34566789999999999999999999999999999988753 34433 357889999998888999999999999
Q ss_pred hcccCCCCCCCCcchHHHHHHHHHhhcCCC-CCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCH-HHHHHHHHHh
Q 004384 537 ATQRGSSVGDAGGAADRVLNQLLTEMDGMS-AKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDE-DSRHQIFKAC 614 (757)
Q Consensus 537 ~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~ 614 (757)
++.+..+ ......+++.|+..+++.. ...+++||+|||.++.+|+..++ +||+..|++|+++. ++...++..
T Consensus 137 ~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~- 210 (272)
T 1d2n_A 137 LDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALEL- 210 (272)
T ss_dssp TTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHH-
T ss_pred hccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHh-
Confidence 8776432 2345678888888888764 34578899999999999984333 39999999987765 555555543
Q ss_pred hccCCCCCccCHHHHHHHcCCC----CHHHHHHHHHHHHH
Q 004384 615 LRKSPVSKDVDLRALAKYTQGF----SGADITEICQRACK 650 (757)
Q Consensus 615 l~~~~~~~~~d~~~la~~~~g~----sg~di~~~~~~a~~ 650 (757)
...+ .+.++..+++.+.|| +-+++.+++..|..
T Consensus 211 --~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 211 --LGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp --HTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred --cCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 2233 345688888888887 56677776665543
No 70
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.77 E-value=4.2e-19 Score=192.99 Aligned_cols=223 Identities=20% Similarity=0.305 Sum_probs=153.1
Q ss_pred cccchhhHHHHhhhhccCCCCChhhh-hhccc-CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccc-ccCc
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKF-EKFGM-SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTM-WFGE 508 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~-~~~~~-~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~-~~g~ 508 (757)
.++|++.+++.+...+.......... ..... .++.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 36899999998887764221111000 00011 245779999999999999999999999999999999988744 8887
Q ss_pred h-hHHHHHHHHHH----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeEE
Q 004384 509 S-EANVREIFDKA----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTVF 572 (757)
Q Consensus 509 ~-e~~i~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v~ 572 (757)
. ...++.+|+.+ ....++||||||||.+...|............++++.||..|++.. ...+++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 6 66778888776 4445789999999999887655433323334569999999999531 011234
Q ss_pred EEeeCCC--------C----------CC-----------------------------------CCccccCCCccceEEEe
Q 004384 573 IIGATNR--------P----------DI-----------------------------------IDPALLRPGRLDQLIYI 599 (757)
Q Consensus 573 vi~tTn~--------~----------~~-----------------------------------ld~allrpgRf~~~i~~ 599 (757)
+|+|||. . .. ++|+|+. ||+.++.|
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 5555554 1 11 6788887 99999999
Q ss_pred cCCCHHHHHHHHHH----hhc-------cCCCCCccC---HHHHHH--HcCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 600 PLPDEDSRHQIFKA----CLR-------KSPVSKDVD---LRALAK--YTQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 600 ~~p~~~~r~~Il~~----~l~-------~~~~~~~~d---~~~la~--~~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
++|+.+++.+|++. +++ .......++ ++.|++ ....++.++|++++..+...++.+.
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 99999999999986 221 112221222 455664 3456778999999999888777654
No 71
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.76 E-value=1.1e-17 Score=179.85 Aligned_cols=194 Identities=21% Similarity=0.282 Sum_probs=147.3
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
..+|++++|.+.+++.+...+..... .-.+..++||+||||||||++|+++|..++.+|+.++++.+.
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~--------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~---- 92 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKK--------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE---- 92 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHH--------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC----
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHh--------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc----
Confidence 34799999999999998887653211 113456799999999999999999999999999999987652
Q ss_pred CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC----------------CCe
Q 004384 507 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA----------------KKT 570 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~----------------~~~ 570 (757)
....+..++.. ...++++|||||+.+. ....+.|+..|+...- ..+
T Consensus 93 --~~~~~~~~~~~--~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 --KSGDLAAILTN--LSEGDILFIDEIHRLS--------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp --SHHHHHHHHHT--CCTTCEEEEETGGGCC--------------HHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred --chhHHHHHHHh--ccCCCEEEEechhhcC--------------HHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 23344444443 2456899999999973 3455666666665320 114
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
+++|+|||++..+++++++ ||+..+++++|+.+++..|++.++.+.+..-+ ..+..+++.+. -+.+++.+++..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHHHH
Confidence 8999999999999999998 99999999999999999999999987664322 23566777555 47789999998887
Q ss_pred HHHH
Q 004384 650 KYAI 653 (757)
Q Consensus 650 ~~a~ 653 (757)
..|.
T Consensus 232 ~~a~ 235 (338)
T 3pfi_A 232 DFAD 235 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6664
No 72
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.75 E-value=7.4e-18 Score=162.32 Aligned_cols=138 Identities=22% Similarity=0.335 Sum_probs=116.6
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEc--CCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEecccc---
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALA--DDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPID--- 75 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~--- 75 (757)
|++||+.+||+|+|+|++ .++|++|| +++++.+.|+||+.+|+|+|+++||.|+|++ .+++.|++|++.|..
T Consensus 31 m~~Lgl~~GD~V~I~G~r--~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~-~~~~~A~~V~l~P~~~~~ 107 (185)
T 1cz4_A 31 RRLLDAEIGDVVEIEKVR--KTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRK-VRTEIAKKVTLAPIIRKD 107 (185)
T ss_dssp HHTTCCCTTCEEEEESSS--EEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEE-ECCCBCSEEEEEEECSTT
T ss_pred HHHcCCCCCCEEEEEcCC--eEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEE-CCCCCccEEEEecccccc
Confidence 789999999999999986 46666666 4789999999999999999999999999999 468999999999985
Q ss_pred ccccCcchhhHHHHhhHhhhhcCccccCCcEEEEec---Cce-eEEEEEEEecCCc-eEEECCCceEEecCCCCc
Q 004384 76 DTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRG---GMR-SVEFKVIETDPGE-YCVVAPDTEIFCEGEPIK 145 (757)
Q Consensus 76 ~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~---~~~-~~~f~v~~~~~~~-~~~~~~~t~~~~~~~~~~ 145 (757)
++.. +.+ .+..+|+++|. .+||.+||.|.+.. .++ .+.|+|++++|.+ +++|+++|.|.+.++|..
T Consensus 108 ~~~~-~~~-~~~~~l~~~l~--~rpv~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~~~p~~ 178 (185)
T 1cz4_A 108 QRLK-FGE-GIEEYVQRALI--RRPMLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIREEPAS 178 (185)
T ss_dssp CCSC-CCS-SHHHHHHHHHT--TCEECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEECSCCST
T ss_pred cccc-ccc-chHHHHHHHHC--CCcccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEECCccch
Confidence 4332 322 23678999886 48999999998863 345 7899999999999 999999999999877763
No 73
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=1.9e-17 Score=175.74 Aligned_cols=211 Identities=17% Similarity=0.250 Sum_probs=158.4
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCC---CceEEEEcCCCCCHHHHHHHHHHHhC-------CeEEEEechhh
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP---PKGILLYGPPGSGKTLIARAVANETG-------AFFFCINGPEI 228 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~---~~~vLL~Gp~GtGKTtLar~la~~l~-------~~~~~v~~~~l 228 (757)
+|+|+++.++.|.+++..+. .+..++.+|+.. +.++||+||||||||++|+++|..++ .+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 79999999999999988744 466777777654 34699999999999999999999873 37899999999
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC---
Q 004384 229 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--- 305 (757)
Q Consensus 229 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~--- 305 (757)
.+.+.|.....+..+|..+ .+++|||||+|.++..++. ......+...|+..++... .++.+|++++...
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~--~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNR--DDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCT--TTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCC--CCEEEEEeCChHHHHH
Confidence 9888888888888888876 4579999999999865432 1223456677888887643 3667777877542
Q ss_pred --CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHh-------cCCCchhHHHHHHHHHHHH
Q 004384 306 --SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKD-------THGYVGADLAALCTEAALQ 375 (757)
Q Consensus 306 --~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~-------t~g~~~~dl~~l~~~a~~~ 375 (757)
.++|++++ ||+..+.++.|+.+++.+|++.+++..... .+..+..++.. ....+.+++..++..+...
T Consensus 184 ~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 184 FFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 24688888 899999999999999999999887654332 22235555554 2223477888888888765
Q ss_pred HHHh
Q 004384 376 CIRE 379 (757)
Q Consensus 376 ~~~~ 379 (757)
+..+
T Consensus 262 ~~~r 265 (309)
T 3syl_A 262 QANR 265 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 74
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.71 E-value=3.3e-17 Score=181.93 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=137.9
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~ 539 (757)
+.+++|+||||||||+||+++++.+ +.+++.+++.++...+.+.........|.......+++|||||++.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 4579999999999999999999987 77889999888765544433322223444444436789999999998642
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC---CCccccCCCccc--eEEEecCCCHHHHHHHHHHh
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---IDPALLRPGRLD--QLIYIPLPDEDSRHQIFKAC 614 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~---ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~ 614 (757)
....+.|+..|+.+...+..+||++.+.+.. +++++++ ||. .++.+++|+.++|.+|++..
T Consensus 210 ------------~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~ 275 (440)
T 2z4s_A 210 ------------TGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKM 275 (440)
T ss_dssp ------------HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHH
T ss_pred ------------hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHH
Confidence 1223344444443333445677776666665 7889988 887 78999999999999999999
Q ss_pred hccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHH
Q 004384 615 LRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEE 693 (757)
Q Consensus 615 l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 693 (757)
++..++.-+ ..+..++..+.| +.+++.+++..+...|.... ..|+.+++++
T Consensus 276 ~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~---------------------------~~It~~~~~~ 327 (440)
T 2z4s_A 276 LEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG---------------------------KEVDLKEAIL 327 (440)
T ss_dssp HHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS---------------------------SCCCHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC---------------------------CCCCHHHHHH
Confidence 875443222 226778888765 89999999998877664321 2477788888
Q ss_pred HHhhcC
Q 004384 694 SMKFAR 699 (757)
Q Consensus 694 a~~~~~ 699 (757)
+++...
T Consensus 328 ~l~~~~ 333 (440)
T 2z4s_A 328 LLKDFI 333 (440)
T ss_dssp HTSTTT
T ss_pred HHHHHh
Confidence 777765
No 75
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=1.3e-16 Score=170.52 Aligned_cols=194 Identities=23% Similarity=0.351 Sum_probs=141.8
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccccccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWF 506 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~ 506 (757)
..+|++++|.+..++.+...+.... . .-..+.+++|+||||||||++|++++..++.+|+.++++.+..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~--- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAK-------A-RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK--- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHH-------H-HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS---
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHH-------c-cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC---
Confidence 3478999999999888887754311 0 0123467999999999999999999999999999998876532
Q ss_pred CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCe
Q 004384 507 GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKT 570 (757)
Q Consensus 507 g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~ 570 (757)
...+...|..+ ...++++||||++.+.. ...+.|+..|+... ...+
T Consensus 77 ---~~~l~~~l~~~-~~~~~~l~lDEi~~l~~--------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ---PGDLAAILANS-LEEGDILFIDEIHRLSR--------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ---HHHHHHHHTTT-CCTTCEEEETTTTSCCH--------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ---hHHHHHHHHHh-ccCCCEEEEECCccccc--------------chHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 22333333321 14568999999998742 23344555444321 0125
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
+.+|++||+++.+++++.+ ||+.++.+++|+.+++.++++.++.+.+..- +..+..+++.+.| +.+++.++++.+.
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVR 215 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHT
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHH
Confidence 7899999999999999998 9999999999999999999999987665432 2236777888765 6688888888776
Q ss_pred HHH
Q 004384 650 KYA 652 (757)
Q Consensus 650 ~~a 652 (757)
..|
T Consensus 216 ~~a 218 (324)
T 1hqc_A 216 DFA 218 (324)
T ss_dssp TTS
T ss_pred HHH
Confidence 554
No 76
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=3.5e-17 Score=178.73 Aligned_cols=245 Identities=17% Similarity=0.200 Sum_probs=150.3
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhh-----------------hcccCCCCceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFE-----------------KFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~-----------------~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
.++|++.+++.|...+..+........ .-...+..+++|+||||||||++|+++|..++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 578999999999877642221111000 001234567999999999999999999999999999
Q ss_pred EEeCcccc-ccccCch-hHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--
Q 004384 495 SVKGPELL-TMWFGES-EANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-- 566 (757)
Q Consensus 495 ~v~~~~l~-~~~~g~~-e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-- 566 (757)
.+++..+. ..|+|.. +..+..+|..+. ...++|+||||+|.+...|+......+.....+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 4567765 455666666432 235689999999999877544322222233458899999998641
Q ss_pred -----------------CCCeEEEEeeCCCC-----------------------------------------CCCCcccc
Q 004384 567 -----------------AKKTVFIIGATNRP-----------------------------------------DIIDPALL 588 (757)
Q Consensus 567 -----------------~~~~v~vi~tTn~~-----------------------------------------~~ld~all 588 (757)
...++++|+|||.. ..+.|+++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 11345777777620 12456666
Q ss_pred CCCccceEEEecCCCHHHHHHHHHH----hhc-------cCCCCCcc---CHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Q 004384 589 RPGRLDQLIYIPLPDEDSRHQIFKA----CLR-------KSPVSKDV---DLRALAKYTQ--GFSGADITEICQRACKYA 652 (757)
Q Consensus 589 rpgRf~~~i~~~~p~~~~r~~Il~~----~l~-------~~~~~~~~---d~~~la~~~~--g~sg~di~~~~~~a~~~a 652 (757)
. ||+.++.|++++.++...|++. +++ .......+ -+..|++... ..+.+++.+++..+...+
T Consensus 262 ~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~ 339 (376)
T 1um8_A 262 G--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDI 339 (376)
T ss_dssp T--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHH
T ss_pred c--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHH
Confidence 6 9999999999999999999973 211 11111112 2455665532 367899999999888877
Q ss_pred HHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhc
Q 004384 653 IRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFA 698 (757)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~ 698 (757)
+.+.... +.....|+.+++..+.+.+
T Consensus 340 ~~~~~~~--------------------~~~~~~i~~~~v~~~~~~~ 365 (376)
T 1um8_A 340 MFDLPKL--------------------KGSEVRITKDCVLKQAEPL 365 (376)
T ss_dssp HHTGGGG--------------------TTSEEEECHHHHTTSSCCE
T ss_pred HhhccCC--------------------CCCEEEEeHHHhcCCCCce
Confidence 7654211 0113468888887765443
No 77
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.67 E-value=1.2e-15 Score=166.69 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=143.6
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---------CCceEEEeCcc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPE 500 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---------~~~~i~v~~~~ 500 (757)
.+++.|.+...+.+...+..... -..+.+++|+||||||||+++++++..+ +..++.+++..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 36788888888888776543211 1334679999999999999999999987 77889999875
Q ss_pred ccccc----------------cCchhH-HHHHHHHHHHhC-CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhh
Q 004384 501 LLTMW----------------FGESEA-NVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEM 562 (757)
Q Consensus 501 l~~~~----------------~g~~e~-~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~l 562 (757)
..+.+ .|.+.. ....+++..... .|++|||||+|.+...+ ....++..++..+
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRIN 159 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhch
Confidence 43211 122222 244555555433 48899999999996531 1456777888777
Q ss_pred cCCCCCCeEEEEeeCCCC---CCCCccccCCCccce-EEEecCCCHHHHHHHHHHhhcc--CCCC-CccCHHHHHHHcC-
Q 004384 563 DGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEDSRHQIFKACLRK--SPVS-KDVDLRALAKYTQ- 634 (757)
Q Consensus 563 d~~~~~~~v~vi~tTn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~l~~--~~~~-~~~d~~~la~~~~- 634 (757)
+......++.+|++||.+ +.+++++.+ ||.. .++|++|+.+++.+|++..+.. .+.. .+..+..+++.+.
T Consensus 160 ~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 160 QELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 655324578899999987 778899988 8975 8999999999999999998864 2211 2223666777765
Q ss_pred --CCCHHHHHHHHHHHHHHHHH
Q 004384 635 --GFSGADITEICQRACKYAIR 654 (757)
Q Consensus 635 --g~sg~di~~~~~~a~~~a~~ 654 (757)
| +.+.+.++|+.|+..|..
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAER 258 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHHHH
Confidence 4 667888899988776653
No 78
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.67 E-value=5e-16 Score=165.99 Aligned_cols=169 Identities=18% Similarity=0.243 Sum_probs=122.7
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccC
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 541 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 541 (757)
+.+++|+||||||||++|+++++.+ +.+++.+++.++...+.+.........|..... .+++|||||++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~~- 114 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGKE- 114 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTCH-
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCCh-
Confidence 4679999999999999999999988 889999999887665554443333334443333 36899999999986421
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC---CCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhc
Q 004384 542 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLR 616 (757)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~ 616 (757)
.....++..++.....+..+|++++|.|+ .+++++.+ ||+ ..+.+++ +.+++.+|++.++.
T Consensus 115 -----------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 115 -----------RTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp -----------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 12233333333322334567888888776 67899998 997 7899999 99999999999997
Q ss_pred cCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 004384 617 KSPVSKD-VDLRALAKYTQGFSGADITEICQRACKY 651 (757)
Q Consensus 617 ~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~ 651 (757)
..++.-+ ..+..+++.+ -+.+++.+++..+...
T Consensus 181 ~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 181 EFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp HTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 6554322 2367788888 5788999888887665
No 79
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.66 E-value=9.6e-16 Score=182.65 Aligned_cols=199 Identities=22% Similarity=0.270 Sum_probs=144.6
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
-.|++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|..+ +..++.++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~ 249 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECC
T ss_pred CCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEc
Confidence 4688899998888777766542 234679999999999999999999986 56677777
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
...+. .+|.|+.+..++.+|+.+....++|+||||++.+.+.++.. .....+.+.|...+ ....+.+|+
T Consensus 250 ~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~-----~~~~~~~~~L~~~l----~~~~~~~I~ 320 (758)
T 1r6b_X 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS-----GGQVDAANLIKPLL----SSGKIRVIG 320 (758)
T ss_dssp CC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS-----SCHHHHHHHHSSCS----SSCCCEEEE
T ss_pred HHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC-----cchHHHHHHHHHHH----hCCCeEEEE
Confidence 77776 56889999999999999998888999999999998764321 11233334333333 345778899
Q ss_pred eCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC----CCC-CccCHHHHHHHc-----CCCCHHH
Q 004384 576 ATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVS-KDVDLRALAKYT-----QGFSGAD 640 (757)
Q Consensus 576 tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~-~~~d~~~la~~~-----~g~sg~d 640 (757)
+||.++ .+|+++.| ||+ .+.|++|+.+++.+||+.+.... .+. .+..+..++..+ +.+.+..
T Consensus 321 at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 998753 67899999 998 79999999999999999877542 221 122244555543 3355667
Q ss_pred HHHHHHHHHHH
Q 004384 641 ITEICQRACKY 651 (757)
Q Consensus 641 i~~~~~~a~~~ 651 (757)
+..++.+|+..
T Consensus 398 ~i~lld~a~~~ 408 (758)
T 1r6b_X 398 AIDVIDEAGAR 408 (758)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77788777643
No 80
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.66 E-value=3.2e-16 Score=173.70 Aligned_cols=208 Identities=21% Similarity=0.321 Sum_probs=144.6
Q ss_pred CCccccccchhhHH---HHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 427 NVSWEDIGGLENVK---RELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 427 ~~~~~~i~g~~~~k---~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
..+|++++|++++. ..|...+... ...+++|+||||||||++|+++|+.++.+|+.+++..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~--- 85 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT--- 85 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT---
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc---
Confidence 35688999999888 5555554321 1256999999999999999999999999999998643
Q ss_pred cccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC--
Q 004384 504 MWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT-- 577 (757)
Q Consensus 504 ~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT-- 577 (757)
...+.++.+|..+.. ..+++|||||||.+... ..+.||..|+. ..+++|++|
T Consensus 86 ----~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 ----SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp ----CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEEESS
T ss_pred ----CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEecCCC
Confidence 234556777766653 45789999999998431 23456666664 345566555
Q ss_pred CCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCC-------CC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 578 NRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP-------VS-KDVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 578 n~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~-------~~-~~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
|....+++++++ |+. ++.+++|+.+++..+++..+.+.. +. .+..++.+++.+.| +.+++.+++..|+
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 455689999998 887 788999999999999999987621 11 12236677777665 7778888877776
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 650 KYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 650 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
..+..+ ......||.+++.+++.....
T Consensus 220 ~~a~~~------------------------~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 220 DMAEVD------------------------DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp HHSCBC------------------------TTSCEECCHHHHHHHHTCCCC
T ss_pred Hhcccc------------------------cCCCCccCHHHHHHHHhhhhh
Confidence 543210 001236888888888876543
No 81
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.65 E-value=2.8e-16 Score=166.81 Aligned_cols=206 Identities=22% Similarity=0.342 Sum_probs=143.2
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc---
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM--- 504 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~--- 504 (757)
.++.|.+.+++.+...+...... +.. .-.+...++|+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKD-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSC-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCC-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 35678888888777765432100 000 11233469999999999999999999987 456999988765432
Q ss_pred --cc-------CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------
Q 004384 505 --WF-------GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------- 566 (757)
Q Consensus 505 --~~-------g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------- 566 (757)
++ |.... ..+.........+++||||+|.+. ..+.+.|+..|+...
T Consensus 93 ~~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~--------------~~~~~~Ll~~le~~~~~~~~~~~~ 156 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAH--------------PDVFNILLQMLDDGRLTDSHGRTV 156 (311)
T ss_dssp HHHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSC--------------HHHHHHHHHHHHHSEEECTTSCEE
T ss_pred HHhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcC--------------HHHHHHHHHHHhcCEEEcCCCCEE
Confidence 12 21111 223344444556899999999862 456777887776432
Q ss_pred CCCeEEEEeeCCC--------------------------CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC--
Q 004384 567 AKKTVFIIGATNR--------------------------PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS-- 618 (757)
Q Consensus 567 ~~~~v~vi~tTn~--------------------------~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~-- 618 (757)
...++++|+|||. ...+++++++ ||+..+.|++|+.+++..|++.++++.
T Consensus 157 ~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~ 234 (311)
T 4fcw_A 157 DFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRA 234 (311)
T ss_dssp ECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHH
T ss_pred ECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 1136789999998 4578888887 999999999999999999999988652
Q ss_pred -----CCCCcc---CHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHH
Q 004384 619 -----PVSKDV---DLRALAKYTQ--GFSGADITEICQRACKYAIRENIE 658 (757)
Q Consensus 619 -----~~~~~~---d~~~la~~~~--g~sg~di~~~~~~a~~~a~~~~~~ 658 (757)
.....+ .+..|++... ..+.++++++++.+...++.+.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 284 (311)
T 4fcw_A 235 RLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 284 (311)
T ss_dssp HHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHHH
T ss_pred HHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHHH
Confidence 112122 2556666554 578899999999999988877654
No 82
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.64 E-value=1.1e-15 Score=164.90 Aligned_cols=161 Identities=23% Similarity=0.361 Sum_probs=102.5
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEE----EeCcc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIS----VKGPE 500 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~----v~~~~ 500 (757)
.+...|+++.|.+.+++.+...... ....++||+||||||||++|++++..++..... +++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 3567899999999987765433221 122459999999999999999999988631100 01110
Q ss_pred ---------------------ccccccCchhHH------HHHHHHHHH---------hCCCeEEEEecccchhcccCCCC
Q 004384 501 ---------------------LLTMWFGESEAN------VREIFDKAR---------QSAPCVLFFDELDSIATQRGSSV 544 (757)
Q Consensus 501 ---------------------l~~~~~g~~e~~------i~~lf~~a~---------~~~p~il~iDEid~l~~~r~~~~ 544 (757)
+.....+.++.. +...|..+. ...++++|||||+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~------- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE------- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-------
Confidence 000011111111 112222221 1125799999999874
Q ss_pred CCCCcchHHHHHHHHHhhcCC----CC-------CCeEEEEeeCCCCC-CCCccccCCCccceEEEecCC-CHHHHHHHH
Q 004384 545 GDAGGAADRVLNQLLTEMDGM----SA-------KKTVFIIGATNRPD-IIDPALLRPGRLDQLIYIPLP-DEDSRHQIF 611 (757)
Q Consensus 545 ~~~~~~~~~~~~~ll~~ld~~----~~-------~~~v~vi~tTn~~~-~ld~allrpgRf~~~i~~~~p-~~~~r~~Il 611 (757)
....+.|+..|+.. .. ..++++|+|||..+ .+++++++ ||+..+++++| +.+++.+|+
T Consensus 158 -------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il 228 (350)
T 1g8p_A 158 -------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVI 228 (350)
T ss_dssp -------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHH
Confidence 23455666655531 10 12689999999855 89999999 99999999998 678888888
Q ss_pred HHh
Q 004384 612 KAC 614 (757)
Q Consensus 612 ~~~ 614 (757)
+..
T Consensus 229 ~~~ 231 (350)
T 1g8p_A 229 RRR 231 (350)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 83
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.64 E-value=3.5e-16 Score=178.15 Aligned_cols=169 Identities=24% Similarity=0.373 Sum_probs=118.9
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh--
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-- 230 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-- 230 (757)
.+.-.+++.|+++.++.+.+.+.+..... .+ ++..++|+||||||||||++++++.++.++..+++..+..
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~------~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~ 148 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTK------SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDES 148 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSS------SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-----
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcc------cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhh
Confidence 34445779999999999987765432111 12 5778999999999999999999999999999988765432
Q ss_pred -------hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCC-----------
Q 004384 231 -------KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSR----------- 292 (757)
Q Consensus 231 -------~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~----------- 292 (757)
.+.|.....+...|..+....| ++||||+|.+...... ...+.|+..++.....
T Consensus 149 ~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 149 EIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp ---------------CHHHHHHTTCSSSE-EEEEEESSSCC----------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred hhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeecccCCeee
Confidence 4455555666677777665655 9999999999865421 1234566666543211
Q ss_pred --CeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 293 --AHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 293 --~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
.++++|+|||.++.+++++++ || ..+.++.|+.+++.+|++.++
T Consensus 221 ~~~~v~iI~ttN~~~~l~~aL~~--R~-~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 221 DLSKVLFIATANNLATIPGPLRD--RM-EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp BCSSCEEEEECSSTTTSCHHHHH--HE-EEEECCCCCHHHHHHHHHHTH
T ss_pred cccceEEEeccCccccCCHHHHh--hc-ceeeeCCCCHHHHHHHHHHHH
Confidence 468899999999999999998 88 478999999999999998764
No 84
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.64 E-value=8.3e-15 Score=189.48 Aligned_cols=323 Identities=16% Similarity=0.238 Sum_probs=178.9
Q ss_pred CCceEEEEcCCCCCHHHHHH-HHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHH---------------hcCCeE
Q 004384 191 PPKGILLYGPPGSGKTLIAR-AVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAE---------------KNAPSI 254 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar-~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~---------------~~~p~i 254 (757)
.++++||+||||||||++|+ .++...+..++.++++...+ ...+...+.... ...++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 45789999999999999995 45554466777787755432 223444444321 123479
Q ss_pred EEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-C-------CCeEEEEEecCCCC-----CCCHHhhccCCcceEE
Q 004384 255 IFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-S-------RAHVIVIGATNRPN-----SIDPALRRFGRFDREI 321 (757)
Q Consensus 255 l~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~-------~~~v~vI~atn~~~-----~ld~~l~r~~rf~~~i 321 (757)
+||||++....++.. ......+++++++. +++. . -.++.+|||+|++. .+++++.| || ..+
T Consensus 1340 lFiDEinmp~~d~yg--~q~~lelLRq~le~-gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYG--SQNVVLFLRQLMEK-QGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSS--CCHHHHHHHHHHHT-SSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EEE
T ss_pred EEecccccccccccC--chhHHHHHHHHHhc-CCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eEE
Confidence 999999975444322 22233444555432 1111 1 12589999999984 89999998 78 789
Q ss_pred EeCCCCHHHHHHHHHHHhcCCC-CCCchh------------h-hHHh-------HhcCCCchhHHHHHHHHHHHH-----
Q 004384 322 DIGVPDEVGRLEVLRIHTKNMK-LSDDVD------------L-ERIA-------KDTHGYVGADLAALCTEAALQ----- 375 (757)
Q Consensus 322 ~i~~p~~~~r~~il~~~~~~~~-l~~~~~------------l-~~la-------~~t~g~~~~dl~~l~~~a~~~----- 375 (757)
.++.|+.+.+..|+..+++... ...+.. + ..+. +...-|+.+|+.++++-....
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~~~~~~~ 1493 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYTAINTGP 1493 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHhcCchhh
Confidence 9999999999999987754321 111110 0 0111 113357778877766543321
Q ss_pred --------------HHHhhcccc-cccchhhhHHHhhhcccchhhhhhhhccCCCCC--cee-eeeeccCCccccccchh
Q 004384 376 --------------CIREKMDVI-DLEDETIDAEILNSMAVSNEHFQTALGTSNPSA--LRE-TVVEVPNVSWEDIGGLE 437 (757)
Q Consensus 376 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~~~p~~--~~~-~~~~~~~~~~~~i~g~~ 437 (757)
+.+-..+.. ..++...-...... +..++| ....... .+. .....-...+.++. .+
T Consensus 1494 ~~~~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~l~~--~~~~~f----~~~~~~~~~~~~~~f~df~~~~Y~~v~-~~ 1566 (2695)
T 4akg_A 1494 RQTLRSLIRLWAYEAWRIFADRLVGVKEKNSFEQLLYE--TVDKYL----PNQDLGNISSTSLLFSGLLSLDFKEVN-KT 1566 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHH--HHHHHS----CCSCCCCCSTTTCCEESSSSSSCEECC-HH
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HHHHHh----cccchhhhccCCceeeecCCCcceecC-HH
Confidence 111111100 00000000000000 001111 1000000 000 00011112344443 24
Q ss_pred hHHHHhhhhccC---------------CCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 438 NVKRELQETVQY---------------PVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 438 ~~k~~l~~~i~~---------------~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
++++.+.+.+.. .+.|...+.+.-..|.+++||+|++||||++|+|..|..++..++.+..+.-+
T Consensus 1567 ~l~~~l~~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~~p~G~~LLvGvgGsGkqSltrLaa~i~~~~~fqi~~~~~Y 1646 (2695)
T 4akg_A 1567 DLVNFIEERFKTFCDEELEVPMVIHESMVDHILRIDRALKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQPKIHRHS 1646 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHHSSSEEEEEECTTTSCHHHHHHHHHHHTTCEEECCCCCTTC
T ss_pred HHHHHHHHHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHcCCCCCEEEECCCCCcHHHHHHHHHHHhCCeeEEEEeeCCC
Confidence 445444443321 12233344444456777899999999999999999999999999988755322
Q ss_pred ccccCchhHHHHHHHHHHH-hCCCeEEEEeccc
Q 004384 503 TMWFGESEANVREIFDKAR-QSAPCVLFFDELD 534 (757)
Q Consensus 503 ~~~~g~~e~~i~~lf~~a~-~~~p~il~iDEid 534 (757)
+ ..+-...++.++.+|. +..|.+++|+|.+
T Consensus 1647 ~--~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1677 (2695)
T 4akg_A 1647 N--LSDFDMILKKAISDCSLKESRTCLIIDESN 1677 (2695)
T ss_dssp C--HHHHHHHHHHHHHHHHHSCCCEEEEEETTT
T ss_pred C--HHHHHHHHHHHHHHcCCCCCceEEEEeccc
Confidence 1 2234578999999985 4557888888764
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.64 E-value=4.3e-15 Score=184.37 Aligned_cols=149 Identities=19% Similarity=0.270 Sum_probs=108.8
Q ss_pred CCCcccccChHHHHHHHHHHHHccccC----------hhhHhh------hC------------CCCCceEEEEcCCCCCH
Q 004384 154 EVGYDDVGGVRKQMAQIRELVELPLRH----------PQLFKS------IG------------VKPPKGILLYGPPGSGK 205 (757)
Q Consensus 154 ~~~~~~i~G~~~~~~~i~~~i~~~l~~----------~~~~~~------l~------------i~~~~~vLL~Gp~GtGK 205 (757)
.++|++|+|+++.++.+.+.+.+|+.+ ++.++. .| ++.++.++|||||||||
T Consensus 1016 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GK 1095 (1706)
T 3cmw_A 1016 GSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGK 1095 (1706)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSH
T ss_pred CceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCCh
Confidence 468999999999999999999988844 555554 22 44566699999999999
Q ss_pred HHHHHHHHHHh---CCeEEEEechh----hh--------hhccch----hHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 206 TLIARAVANET---GAFFFCINGPE----IM--------SKLAGE----SESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 206 TtLar~la~~l---~~~~~~v~~~~----l~--------~~~~g~----~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
|+||++++.+. +.+.+.++..+ +. +++.++ ++..++.++..|+...|+++|+|++++|++.
T Consensus 1096 T~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1096 TTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCH
T ss_pred HHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCcc
Confidence 99999998765 44555555544 22 455566 7899999999999999999999999999988
Q ss_pred CC---CC---chHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 267 RE---KT---HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 267 ~~---~~---~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
++ .. ...+..|++++++..++++....+|+|| +||+
T Consensus 1176 ~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1176 AEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred cccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 32 11 1256778899999999987777788887 5554
No 86
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.64 E-value=4.4e-16 Score=174.36 Aligned_cols=185 Identities=24% Similarity=0.334 Sum_probs=129.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
.-.+++++|.+...+.+.+.+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 242 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred cCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe
Confidence 34678899999888887776542 234579999999999999999999986 6778888
Q ss_pred eCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 497 KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 497 ~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
+++ ++|.|+.+..++.+|..+....++|+|+| + . ....+.|+..|+ ...+.+|+|
T Consensus 243 ~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---~---------~~a~~~L~~~L~----~g~v~vI~a 297 (468)
T 3pxg_A 243 DMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A---------IDASNILKPSLA----RGELQCIGA 297 (468)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC------C--------------------CCCTT----SSSCEEEEE
T ss_pred eCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---c---------hhHHHHHHHhhc----CCCEEEEec
Confidence 877 77889999999999999999889999999 1 0 112344444443 457899999
Q ss_pred CCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCC----CC-CccCHHHHHHHcCC-----CCHHHH
Q 004384 577 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP----VS-KDVDLRALAKYTQG-----FSGADI 641 (757)
Q Consensus 577 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~----~~-~~~d~~~la~~~~g-----~sg~di 641 (757)
||.++ .+|+++.| ||. .|.|++|+.+++..|++.++.++. +. .+..+..++..+.+ +.+...
T Consensus 298 t~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 99987 69999999 998 599999999999999999887632 21 12225555555443 344577
Q ss_pred HHHHHHHHHHH
Q 004384 642 TEICQRACKYA 652 (757)
Q Consensus 642 ~~~~~~a~~~a 652 (757)
..++.+|+..+
T Consensus 375 i~ll~~a~~~~ 385 (468)
T 3pxg_A 375 IDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77787777544
No 87
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.63 E-value=3.6e-15 Score=155.09 Aligned_cols=195 Identities=22% Similarity=0.289 Sum_probs=131.7
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh-hhccch
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM-SKLAGE 235 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~-~~~~g~ 235 (757)
...+.|....++.+......- ...+...+..++.++||+||||||||++|++++..++.+++.+++++.. +...+.
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 345777777766665532110 1223333456678899999999999999999999999999999887532 221223
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-CCCeEEEEEecCCCCCCCH-Hhhc
Q 004384 236 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-SRAHVIVIGATNRPNSIDP-ALRR 313 (757)
Q Consensus 236 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~v~vI~atn~~~~ld~-~l~r 313 (757)
....++.+|..+....+++|||||+|.++..+..+ ......+...|..+++... ....+++|++||.++.+++ .+++
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 33567888888887788999999999997654322 1223456667777777654 2347889999999887766 4444
Q ss_pred cCCcceEEEeCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCC
Q 004384 314 FGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGY 360 (757)
Q Consensus 314 ~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~ 360 (757)
||...+.+|.+.. |.++.....+...+ .+..+..++..+.||
T Consensus 188 --rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 188 --AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGK 229 (272)
T ss_dssp --TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTS
T ss_pred --ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCC
Confidence 8988888866655 33333333222222 445688899999887
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.63 E-value=7.5e-15 Score=147.00 Aligned_cols=200 Identities=21% Similarity=0.228 Sum_probs=140.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l 501 (757)
...|+++.|.++..+.+.+.+... ...+++|+||||||||+++++++..+ ...++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc
Confidence 456888999999998888776531 12349999999999999999999875 346777776653
Q ss_pred cccccCchhHHHHHHHHHHH------hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 502 LTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
.+ ...+...+.... ...+.++||||+|.+.. ...+.|+..++.. ..++.+|+
T Consensus 80 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~l~~~l~~~--~~~~~~i~ 137 (226)
T 2chg_A 80 RG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFIL 137 (226)
T ss_dssp TC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred cC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------------HHHHHHHHHHHhc--CCCCeEEE
Confidence 22 122222222221 24578999999999743 2345555555543 34677888
Q ss_pred eCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Q 004384 576 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQGFSGADITEICQRACKYAIR 654 (757)
Q Consensus 576 tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~ 654 (757)
+||.++.+++++.+ ||. .+.+++|+.++..++++..+.+.+..- +..+..+++.+.| +.+.+.+++..++..+
T Consensus 138 ~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-- 211 (226)
T 2chg_A 138 SCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-- 211 (226)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC--
T ss_pred EeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC--
Confidence 89999999999998 998 999999999999999999886654432 2235667776654 5566666555544321
Q ss_pred HHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHh
Q 004384 655 ENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMK 696 (757)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~ 696 (757)
..|+.+|+++++.
T Consensus 212 -----------------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----------------------------EVVDADTIYQITA 224 (226)
T ss_dssp -----------------------------SCBCHHHHHHHHH
T ss_pred -----------------------------ceecHHHHHHHhc
Confidence 2689999998875
No 89
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=8.3e-16 Score=174.51 Aligned_cols=200 Identities=17% Similarity=0.236 Sum_probs=131.0
Q ss_pred CCccccccchhhHHHHhhhhccCCC-CChhhhhhccc---CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPV-EHPEKFEKFGM---SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~-~~~~~~~~~~~---~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
..+|++++|.+.+++.|.+++.... ..+..+...+. .+++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~ 114 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVR 114 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 3578999999999999988875311 11122333333 2557899999999999999999999999999999998876
Q ss_pred ccccCchhH-------HHHHHHHHH-----HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCe
Q 004384 503 TMWFGESEA-------NVREIFDKA-----RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKT 570 (757)
Q Consensus 503 ~~~~g~~e~-------~i~~lf~~a-----~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 570 (757)
+.+...... .+..+|..+ ....++||||||+|.+.... ...++.|+..++. ....
T Consensus 115 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----------~~~l~~L~~~l~~--~~~~ 181 (516)
T 1sxj_A 115 SKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----------RGGVGQLAQFCRK--TSTP 181 (516)
T ss_dssp CHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----------TTHHHHHHHHHHH--CSSC
T ss_pred hHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----------HHHHHHHHHHHHh--cCCC
Confidence 544322111 133344443 23567899999999986521 1124445555543 2234
Q ss_pred EEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCC--CCCccCHHHHHHHcCCCCHHHHHHHHHHH
Q 004384 571 VFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSP--VSKDVDLRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 571 v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~--~~~~~d~~~la~~~~g~sg~di~~~~~~a 648 (757)
+++++++.....+. .+. |+...+.|++|+.+++.++++..+.+.+ ++.+ .+..+++.+.| |++.+++..
T Consensus 182 iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G----diR~~i~~L 252 (516)
T 1sxj_A 182 LILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG----DIRQVINLL 252 (516)
T ss_dssp EEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT----CHHHHHHHH
T ss_pred EEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC----cHHHHHHHH
Confidence 55555554444454 343 5566999999999999999988775543 3332 37778877654 555555443
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.62 E-value=2.8e-15 Score=152.38 Aligned_cols=205 Identities=11% Similarity=0.148 Sum_probs=136.6
Q ss_pred CCccccccch---hhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC---CceEEEeCcc
Q 004384 427 NVSWEDIGGL---ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPE 500 (757)
Q Consensus 427 ~~~~~~i~g~---~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~---~~~i~v~~~~ 500 (757)
..+|+++.+. ..+.+.+...+.. ....+++|+||||||||++|++++..+. .+++.+++++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3567777652 3444445444332 1346799999999999999999998764 6788888877
Q ss_pred ccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeE-EEEeeCCC
Q 004384 501 LLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTV-FIIGATNR 579 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v-~vi~tTn~ 579 (757)
+...+.. .++.. ..+.++||||++.+... ....+.|+..++.......+ +|+++++.
T Consensus 91 ~~~~~~~--------~~~~~--~~~~vliiDe~~~~~~~------------~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 91 HASISTA--------LLEGL--EQFDLICIDDVDAVAGH------------PLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGGSCGG--------GGTTG--GGSSEEEEETGGGGTTC------------HHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred HHHHHHH--------HHHhc--cCCCEEEEeccccccCC------------HHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 6543311 11111 33679999999998532 11123333333332222333 55555555
Q ss_pred CC---CCCccccCCCccc--eEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Q 004384 580 PD---IIDPALLRPGRLD--QLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRACKYAI 653 (757)
Q Consensus 580 ~~---~ld~allrpgRf~--~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~~~a~ 653 (757)
++ .+++++.+ ||. ..+++++|+.+++.++++.+++..++.-+ ..+..+++.+.| +.+++.+++..|...|.
T Consensus 149 ~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 149 PMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 54 45578887 886 89999999999999999999876554322 236677777765 88999999998877764
Q ss_pred HHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHh
Q 004384 654 RENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMK 696 (757)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~ 696 (757)
.+. ..||.++++++++
T Consensus 226 ~~~---------------------------~~It~~~v~~~l~ 241 (242)
T 3bos_A 226 VHQ---------------------------RKLTIPFVKEMLR 241 (242)
T ss_dssp HHT---------------------------CCCCHHHHHHHHT
T ss_pred HhC---------------------------CCCcHHHHHHHhh
Confidence 332 2699999998875
No 91
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.62 E-value=9e-15 Score=154.87 Aligned_cols=216 Identities=23% Similarity=0.348 Sum_probs=145.3
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhC-CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh-hccch
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIG-VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS-KLAGE 235 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~-i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~-~~~g~ 235 (757)
+++.|.+++++.+...+..++.++.+...+. -..+.+++|+||||||||+++++++..++.+++.+++.++.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 3589999999999888765433332221110 134678999999999999999999999999999999988765 34442
Q ss_pred -hHHHHHHHHHHH-----HhcCCeEEEEcccccccCCCCCCchH-HHHHHHHHHHHHhhccc--------CCCeEEEEEe
Q 004384 236 -SESNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGE-VERRIVSQLLTLMDGLK--------SRAHVIVIGA 300 (757)
Q Consensus 236 -~~~~l~~vf~~a-----~~~~p~il~iDEid~l~~~~~~~~~~-~~~~~~~~Ll~~l~~~~--------~~~~v~vI~a 300 (757)
....++.++..+ ....+++|||||+|.+.+.......+ ....+...|+..+++.. ....+++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234455555422 11235799999999998775432222 23345677888887532 1235677777
Q ss_pred ----cCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh-------------cCCCC-CCchhhhHHhHhcC----
Q 004384 301 ----TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT-------------KNMKL-SDDVDLERIAKDTH---- 358 (757)
Q Consensus 301 ----tn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~-------------~~~~l-~~~~~l~~la~~t~---- 358 (757)
++.+..+++++.+ ||+..+.++.|+.+++.+|++... ....+ .++..++.++....
T Consensus 175 ~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~ 252 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNE 252 (310)
T ss_dssp ECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcc
Confidence 4567789999987 999889999999999999987311 11111 12334666666552
Q ss_pred ---CCchhHHHHHHHHHHHH
Q 004384 359 ---GYVGADLAALCTEAALQ 375 (757)
Q Consensus 359 ---g~~~~dl~~l~~~a~~~ 375 (757)
+...+.+..++..+...
T Consensus 253 ~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 253 KTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HSCCCTTHHHHHHHHHHSHH
T ss_pred cccccCcHHHHHHHHHHHHh
Confidence 45667777777665543
No 92
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=5.9e-16 Score=151.30 Aligned_cols=159 Identities=21% Similarity=0.361 Sum_probs=116.2
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
...|+++.|.++..+.+.+.+.. ..+.+++|+||||||||++|++++..+ +.+++.+
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 34577888888887777766432 234679999999999999999999986 6788888
Q ss_pred eCcccc--ccccCchhHHHHHHHHHHH-hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEE
Q 004384 497 KGPELL--TMWFGESEANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 573 (757)
Q Consensus 497 ~~~~l~--~~~~g~~e~~i~~lf~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 573 (757)
++.++. ..+.|.....+..+++.+. ...++++||||+|.+...+... . .......+..++ + ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~--~-~~~~~~~l~~~~---~----~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--G-AMDAGNMLKPAL---A----RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHH---H----TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCccc--c-hHHHHHHHHHhh---c----cCCeEE
Confidence 887765 3556667778888888664 4558899999999997654321 1 112233333333 2 235678
Q ss_pred EeeCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHH
Q 004384 574 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIF 611 (757)
Q Consensus 574 i~tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il 611 (757)
|++||.++ .+|+++.+ ||+ .+++++|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888876 78999999 999 6999999999998876
No 93
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.62 E-value=1.5e-15 Score=162.87 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=107.2
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCc------cccc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGP------ELLT 503 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~------~l~~ 503 (757)
++++.|.+++++.+...+.. ..+++|+||||||||++|+++|..++.+++.+++. ++.+
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred ccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 45677888888777655432 25799999999999999999999999999988863 2222
Q ss_pred cccCch-hHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC---------CCCCeEEE
Q 004384 504 MWFGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM---------SAKKTVFI 573 (757)
Q Consensus 504 ~~~g~~-e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~---------~~~~~v~v 573 (757)
...-.. .... .|. ......+++|+||++.+. ....+.|+..|+.. ....+++|
T Consensus 91 ~~~~~~~~~~~--~~~-~g~l~~~vl~iDEi~~~~--------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 TMIYNQHKGNF--EVK-KGPVFSNFILADEVNRSP--------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEETTTTEE--EEE-ECTTCSSEEEEETGGGSC--------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ceeecCCCCce--Eec-cCcccccEEEEEccccCC--------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 111000 0000 000 000012699999999863 34556666666532 12346788
Q ss_pred EeeCCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC
Q 004384 574 IGATNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS 618 (757)
Q Consensus 574 i~tTn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 618 (757)
|+|+|..+ .+++++++ ||+..+++++|+.+++.+|++..+...
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 88888654 38999999 999999999999999999999988653
No 94
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.9e-15 Score=158.63 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=105.5
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEeCccccccc----------------cCchhHHHHHH
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVKGPELLTMW----------------FGESEANVREI 516 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~~~~l~~~~----------------~g~~e~~i~~l 516 (757)
..+.+++|+||||||||+++++++.++ ...++.++|..+.+.+ .+.+...++.+
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 346779999999999999999999987 3568899987654421 23456678888
Q ss_pred HHHH--HhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC----CccccCC
Q 004384 517 FDKA--RQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII----DPALLRP 590 (757)
Q Consensus 517 f~~a--~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l----d~allrp 590 (757)
|+.. ....++|+|+||+|.+.. .+++..|+.... ....+++||+++|..+.. ++++.+
T Consensus 123 f~~~~~~~~~~~ii~lDE~d~l~~-------------q~~L~~l~~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~S- 186 (318)
T 3te6_A 123 ITNVPKAKKRKTLILIQNPENLLS-------------EKILQYFEKWIS--SKNSKLSIICVGGHNVTIREQINIMPSL- 186 (318)
T ss_dssp HHHSCGGGSCEEEEEEECCSSSCC-------------THHHHHHHHHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHH-
T ss_pred HHHhhhccCCceEEEEecHHHhhc-------------chHHHHHHhccc--ccCCcEEEEEEecCcccchhhcchhhhc-
Confidence 9875 455689999999999961 245555655432 245679999999998754 455565
Q ss_pred Cccc-eEEEecCCCHHHHHHHHHHhhccC
Q 004384 591 GRLD-QLIYIPLPDEDSRHQIFKACLRKS 618 (757)
Q Consensus 591 gRf~-~~i~~~~p~~~~r~~Il~~~l~~~ 618 (757)
||. ..|.|++++.++..+|++..++..
T Consensus 187 -R~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 187 -KAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp -HTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 887 689999999999999999998653
No 95
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.61 E-value=4.4e-14 Score=151.33 Aligned_cols=231 Identities=22% Similarity=0.308 Sum_probs=155.8
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccC
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 507 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 507 (757)
.+|++..|.+.+++.+...+.... . .-.++..++|+||||||||||++++|++++.++...+++.+..
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~-------~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~---- 89 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAK-------M-RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK---- 89 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHH-------H-HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----
T ss_pred ccHHHccCcHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----
Confidence 367778888888777765543210 0 0123466999999999999999999999999888777765422
Q ss_pred chhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC----------------CCCeE
Q 004384 508 ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS----------------AKKTV 571 (757)
Q Consensus 508 ~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~----------------~~~~v 571 (757)
...+..++... ...+|+|+||++.+.+ .+.+.++..|+... ....+
T Consensus 90 --~~~l~~~~~~~--~~~~v~~iDE~~~l~~--------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 --QGDMAAILTSL--ERGDVLFIDEIHRLNK--------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp --HHHHHHHHHHC--CTTCEEEEETGGGCCH--------------HHHHHHHHHHHTSCCCC---------------CCC
T ss_pred --HHHHHHHHHHc--cCCCEEEEcchhhcCH--------------HHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 23344444332 2457999999998743 12233333332211 01246
Q ss_pred EEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004384 572 FIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRACK 650 (757)
Q Consensus 572 ~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~~ 650 (757)
.++++||++..|++++.+ ||...+.+++|+.+++.+|++...+..++..+. .+..+|+.+.| +.+.+.++++.+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHH
Confidence 678899999999999998 999899999999999999999988766554322 36677777776 66888888888877
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCC---CCCHHHHHHHHHHHHHH
Q 004384 651 YAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR---SVSDADIRKYQAFAQTL 717 (757)
Q Consensus 651 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~---s~~~~~~~~y~~~~~~~ 717 (757)
.|..+. ...||.+++++++..+.. .++..+......+.+.|
T Consensus 229 ~a~~~~--------------------------~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (334)
T 1in4_A 229 MLTVVK--------------------------ADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIY 272 (334)
T ss_dssp HHHHHT--------------------------CSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred HHHHcC--------------------------CCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHh
Confidence 665432 125777777777766532 33444444445555555
No 96
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.61 E-value=1.7e-15 Score=180.29 Aligned_cols=186 Identities=23% Similarity=0.319 Sum_probs=131.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
.-.+++++|.++..+.+.+.+.. ....++||+||||||||++|+++|..+ +..++.+
T Consensus 176 ~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~ 242 (758)
T 3pxi_A 176 EDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTL 242 (758)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC
T ss_pred hCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEe
Confidence 34678899999998888776542 234569999999999999999999997 6777777
Q ss_pred eCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 497 KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 497 ~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
++ ..+|.|+.+..++.+|+.+....++||||| . . ....+.|+..|+ ...+.+|+|
T Consensus 243 ~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----~---------~~~~~~L~~~l~----~~~v~~I~a 297 (758)
T 3pxi_A 243 DM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----A---------IDASNILKPSLA----RGELQCIGA 297 (758)
T ss_dssp -------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEEE
T ss_pred cc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----c---------hhHHHHHHHHHh----cCCEEEEeC
Confidence 76 567899999999999999999999999999 0 0 123344444444 557899999
Q ss_pred CCCCC-----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCcc-----CHHHHHHH-----cCCCCHHHH
Q 004384 577 TNRPD-----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKDV-----DLRALAKY-----TQGFSGADI 641 (757)
Q Consensus 577 Tn~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~-----d~~~la~~-----~~g~sg~di 641 (757)
||..+ .+|+++.| ||. .|+|++|+.+++.+||+.++.+......+ .+..++.. ++++.+...
T Consensus 298 t~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp CCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred CChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 99988 79999999 995 69999999999999999888764322222 24444443 356677777
Q ss_pred HHHHHHHHHHHH
Q 004384 642 TEICQRACKYAI 653 (757)
Q Consensus 642 ~~~~~~a~~~a~ 653 (757)
..++.+|+..+.
T Consensus 375 i~ll~~a~~~~~ 386 (758)
T 3pxi_A 375 IDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778888766543
No 97
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=7.7e-15 Score=160.45 Aligned_cols=194 Identities=23% Similarity=0.283 Sum_probs=134.8
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-----------CCceEEEeCc
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----------QANFISVKGP 499 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-----------~~~~i~v~~~ 499 (757)
+++.|.++..+.+.+.+..... -..+.+++|+||||||||++|++++..+ +.+++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK---------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT---------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 6788888888887766542111 1234579999999999999999999987 8889999876
Q ss_pred ccc-cc-----------------ccCch-hHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHH-HHHHH
Q 004384 500 ELL-TM-----------------WFGES-EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRV-LNQLL 559 (757)
Q Consensus 500 ~l~-~~-----------------~~g~~-e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~-~~~ll 559 (757)
+.. +. +.|.+ ...+..+++.+....+ +|||||+|.+...+ ...+ +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~----------~~~~~l~~l~ 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRR----------GGDIVLYQLL 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHST----------TSHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCC----------CCceeHHHHh
Confidence 543 11 11222 2335555555554444 99999999986532 1233 55554
Q ss_pred HhhcCCCCCCeEEEEeeCCCC---CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc----CCCCCccCHHHHHHH
Q 004384 560 TEMDGMSAKKTVFIIGATNRP---DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK----SPVSKDVDLRALAKY 632 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~---~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~----~~~~~~~d~~~la~~ 632 (757)
... .++.+|++||.+ +.+++++.+ ||...++|++|+.++..+|++..++. ..++ +..+..+++.
T Consensus 160 ~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~i~~~ 230 (384)
T 2qby_B 160 RSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD-DEILSYIAAI 230 (384)
T ss_dssp TSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC-SHHHHHHHHH
T ss_pred cCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC-HHHHHHHHHH
Confidence 443 578899999987 678999888 98889999999999999999998864 2222 2235667777
Q ss_pred cCCC--CHHHHHHHHHHHHHHHH
Q 004384 633 TQGF--SGADITEICQRACKYAI 653 (757)
Q Consensus 633 ~~g~--sg~di~~~~~~a~~~a~ 653 (757)
+.+. +.+.+.++|+.|...|.
T Consensus 231 ~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 231 SAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHhccCCHHHHHHHHHHHHHHhc
Confidence 6522 45666778887766553
No 98
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.60 E-value=1.2e-14 Score=147.42 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=133.0
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCce--------------
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANF-------------- 493 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~-------------- 493 (757)
..|+++.|.+...+.+...+... ..+..++|+||||+|||+++++++..+....
T Consensus 20 ~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 20 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred ccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 45778999999888887765421 1234699999999999999999998874321
Q ss_pred ----------EEEeCccccccccCchhHHHHHHHHHHH----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 494 ----------ISVKGPELLTMWFGESEANVREIFDKAR----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 494 ----------i~v~~~~l~~~~~g~~e~~i~~lf~~a~----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
+.+.... ......++.+++... ...+.+|||||+|.+. ...++.|+
T Consensus 88 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------------~~~~~~l~ 147 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 147 (250)
T ss_dssp HHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------------HHHHHHHH
T ss_pred HHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------------HHHHHHHH
Confidence 2222111 112334566666543 2347899999999862 34566777
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSG 638 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg 638 (757)
..++.. ..++.+|++||.++.+++++.+ |+ ..+++++|+.++..++++.++.+.+.. .+..+..+++.+.| +.
T Consensus 148 ~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 221 (250)
T 1njg_A 148 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 221 (250)
T ss_dssp HHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CH
Confidence 777753 3467888889999999999887 76 689999999999999999998765433 22346778888877 88
Q ss_pred HHHHHHHHHHH
Q 004384 639 ADITEICQRAC 649 (757)
Q Consensus 639 ~di~~~~~~a~ 649 (757)
+.+.++|+.|.
T Consensus 222 ~~~~~~~~~~~ 232 (250)
T 1njg_A 222 RDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887763
No 99
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.60 E-value=3.8e-14 Score=152.21 Aligned_cols=195 Identities=21% Similarity=0.278 Sum_probs=141.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
++.+.+|++++|.+..++.+.+.+...... -.+..++||+||||||||++|++++..++.+++.+++..+.
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~--------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~- 92 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAKKR--------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE- 92 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHHHT--------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC-
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHHhc--------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc-
Confidence 455668999999999999999888653211 13456799999999999999999999999999999987652
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC----------------CCe
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS----------------RAH 294 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~----------------~~~ 294 (757)
....+...+.. ...+++|||||++.+.+ .....|+..++...- ...
T Consensus 93 -----~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 93 -----KSGDLAAILTN--LSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp -----SHHHHHHHHHT--CCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred -----chhHHHHHHHh--ccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 12233333332 34578999999998852 233455556654320 124
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHH
Q 004384 295 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAA 373 (757)
Q Consensus 295 v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~ 373 (757)
+.+|++||....+++++++ ||+..+.++.|+.+++..++..+....... .+..+..++..+.|. .+.+..++..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~l~~~l~~~~ 231 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRST-PRIALRLLKRVR 231 (338)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC-HHHHHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 7899999999999999988 899999999999999999998876654432 333467777766554 456666666554
Q ss_pred HH
Q 004384 374 LQ 375 (757)
Q Consensus 374 ~~ 375 (757)
..
T Consensus 232 ~~ 233 (338)
T 3pfi_A 232 DF 233 (338)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 100
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.60 E-value=2.9e-15 Score=180.20 Aligned_cols=201 Identities=22% Similarity=0.315 Sum_probs=133.4
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEE
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISV 496 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v 496 (757)
...+++++|.++....+.+.+.. ....+++|+||||||||++|+++|..+ +.+++.+
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred cCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 45688888988877777665432 234579999999999999999999987 7889999
Q ss_pred eCcccc--ccccCchhHHHHHHHHHHHhC-CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEE
Q 004384 497 KGPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFI 573 (757)
Q Consensus 497 ~~~~l~--~~~~g~~e~~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~v 573 (757)
+++.+. .+|.|+.+..++.+|+.+... .|+|+||||++.+.+.+... ....+.+.|...++. ..+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~------g~~~~~~~L~~~l~~----~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE------GAVDAGNMLKPALAR----GELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------------HHHHHT----TCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc------chHHHHHHHHHHHhC----CCeEE
Confidence 998886 578899999999999999875 68999999999998764321 112333444444432 45678
Q ss_pred EeeCCCCC----CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccC----CCC-CccCHHHHHHH-----cCCCCHH
Q 004384 574 IGATNRPD----IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKS----PVS-KDVDLRALAKY-----TQGFSGA 639 (757)
Q Consensus 574 i~tTn~~~----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~----~~~-~~~d~~~la~~-----~~g~sg~ 639 (757)
|++||.++ .+|+++.| ||+. |+|++|+.+++.+||+.++.+. .+. .+..+..+++. +++|.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~ 379 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 379 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChH
Confidence 89998875 58999999 9995 9999999999999999877643 211 11224445543 3556777
Q ss_pred HHHHHHHHHHHHHH
Q 004384 640 DITEICQRACKYAI 653 (757)
Q Consensus 640 di~~~~~~a~~~a~ 653 (757)
....++.+|+..+.
T Consensus 380 kai~lldea~a~~~ 393 (854)
T 1qvr_A 380 KAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887766554
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.59 E-value=3.8e-14 Score=183.41 Aligned_cols=174 Identities=21% Similarity=0.371 Sum_probs=114.0
Q ss_pred cCCCCceeeecCCCCChhHHH-HHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHH-H--------------hCCC
Q 004384 462 MSPSKGVLFYGPPGCGKTLLA-KAIANECQANFISVKGPELLTMWFGESEANVREIFDKA-R--------------QSAP 525 (757)
Q Consensus 462 ~~~~~gilL~GppGtGKT~la-~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a-~--------------~~~p 525 (757)
+...+++||+||||||||++| ++++...+..++.++.+...+ ...+...+... . ...+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~ 1337 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKN 1337 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSC
T ss_pred HHCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCce
Confidence 345678999999999999999 555555567778887765432 23344444332 1 2234
Q ss_pred eEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCC--------CCeEEEEeeCCCCC-----CCCccccCCCc
Q 004384 526 CVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSA--------KKTVFIIGATNRPD-----IIDPALLRPGR 592 (757)
Q Consensus 526 ~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~--------~~~v~vi~tTn~~~-----~ld~allrpgR 592 (757)
+|+|+||++.....+.. .....+++.+++ +..++.. ..++.+|||||+|. .|+++++| |
T Consensus 1338 ~VlFiDEinmp~~d~yg-----~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--r 1409 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYG-----SQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--H 1409 (2695)
T ss_dssp EEEEEETTTCSCCCSSS-----CCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--T
T ss_pred EEEEecccccccccccC-----chhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--e
Confidence 79999999975443211 124556666665 3333221 13589999999994 89999999 9
Q ss_pred cceEEEecCCCHHHHHHHHHHhhccCC-CCCccC--HHHHH-----------HH-------cCCCCHHHHHHHHHHHHH
Q 004384 593 LDQLIYIPLPDEDSRHQIFKACLRKSP-VSKDVD--LRALA-----------KY-------TQGFSGADITEICQRACK 650 (757)
Q Consensus 593 f~~~i~~~~p~~~~r~~Il~~~l~~~~-~~~~~d--~~~la-----------~~-------~~g~sg~di~~~~~~a~~ 650 (757)
| .+++++.|+.+++..|+..+++..- ...++. ...++ +. ---||-+|+..+++-...
T Consensus 1410 f-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGll~ 1487 (2695)
T 4akg_A 1410 A-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGVYT 1487 (2695)
T ss_dssp E-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHHHH
T ss_pred e-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHHHh
Confidence 9 7899999999999999998886532 111111 01111 11 124899999998876443
No 102
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.59 E-value=3.3e-14 Score=154.53 Aligned_cols=200 Identities=23% Similarity=0.304 Sum_probs=138.5
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechhhhhhcc
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLA 233 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~~l~~~~~ 233 (757)
.|+++.|.+..++.+..+...- . -+..++.++||+||||||||++|++++..++. +++.+++..+...+.
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~-------~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 113 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMI-------R-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEM 113 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHH-------H-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSS
T ss_pred chhhccChHHHHHHHHHHHHHH-------H-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhccc
Confidence 4999999999988876655431 1 12345678999999999999999999999975 677888765332221
Q ss_pred -------------------------------------------------chhHHHHHHHHHHHHh-----c----CCeEE
Q 004384 234 -------------------------------------------------GESESNLRKAFEEAEK-----N----APSII 255 (757)
Q Consensus 234 -------------------------------------------------g~~~~~l~~vf~~a~~-----~----~p~il 255 (757)
+.....++..+..+.. . .|++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl 193 (368)
T 3uk6_A 114 SKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVL 193 (368)
T ss_dssp CHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred chhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceE
Confidence 1112334444444332 1 16799
Q ss_pred EEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec-----------CCCCCCCHHhhccCCcceEEEeC
Q 004384 256 FIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-----------NRPNSIDPALRRFGRFDREIDIG 324 (757)
Q Consensus 256 ~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~at-----------n~~~~ld~~l~r~~rf~~~i~i~ 324 (757)
||||+|.+.. .....|+..++.... .++++++. +.+..+++++++ ||.. +.++
T Consensus 194 ~IDEi~~l~~-----------~~~~~L~~~le~~~~--~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~ 257 (368)
T 3uk6_A 194 FIDEVHMLDI-----------ESFSFLNRALESDMA--PVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTT 257 (368)
T ss_dssp EEESGGGSBH-----------HHHHHHHHHTTCTTC--CEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEEC
T ss_pred EEhhccccCh-----------HHHHHHHHHhhCcCC--CeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEec
Confidence 9999998742 234566677765332 45555543 346789999988 8855 8999
Q ss_pred CCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHh
Q 004384 325 VPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 325 ~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
+|+.+++.++++..+..... .++..++.++..+.+.+.+++..++..+...+...
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999877654322 23345788888888667888999999888766543
No 103
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.58 E-value=4.6e-15 Score=142.02 Aligned_cols=138 Identities=14% Similarity=0.241 Sum_probs=110.3
Q ss_pred CcccCCCCCCeEEEEeCCCceEEEEEEcCC--CCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEecccccc-
Q 004384 1 MDKLQIFRGDTILIKGKKRKDTICIALADD--TCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDT- 77 (757)
Q Consensus 1 m~~l~~~~g~~v~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~- 77 (757)
|.+||+..||+|+|+|+++..+++|....+ +.+.+.|.||+.+|+|+|++.||.|+|+++.+++.|++|+++|.+..
T Consensus 34 ~~~L~~~~gd~VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~~~~A~~V~laP~~~dD 113 (179)
T 1wlf_A 34 VAQLHLLQNQAIEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSHVVSCQQVEVEPLSADD 113 (179)
T ss_dssp HHHTTCCTTCCEEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSCCEECSEEEEEESSHHH
T ss_pred HHHcCCCCCcEEEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCCCccceEEEEEcCCcCC
Confidence 678999999999999987544555555444 67899999999999999999999999999778899999999998521
Q ss_pred ccCcchhhHHHHhhHhhhhcCccccCCcEEEEecCc-eeEEEEEEEecC-CceEEECCCceEEec
Q 004384 78 IEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGM-RSVEFKVIETDP-GEYCVVAPDTEIFCE 140 (757)
Q Consensus 78 ~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~-~~~~f~v~~~~~-~~~~~~~~~t~~~~~ 140 (757)
++ + .+....+|+.+|..+.|+|.+||.|.+.-.+ ..+.|+|+++.| .+++.++++|++.+.
T Consensus 114 ~e-i-~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~ 176 (179)
T 1wlf_A 114 WE-I-LELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQ 176 (179)
T ss_dssp HH-H-HHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEEC
T ss_pred eE-E-ehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEe
Confidence 11 1 1222457888888888999999999985332 678999999999 889999999999875
No 104
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.58 E-value=2.3e-14 Score=156.37 Aligned_cols=204 Identities=18% Similarity=0.241 Sum_probs=138.1
Q ss_pred ccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh------CCceEEEeCcccc
Q 004384 429 SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELL 502 (757)
Q Consensus 429 ~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~------~~~~i~v~~~~l~ 502 (757)
..+++.|.++..+.+.+.+..... -..+..++|+||||||||++++++++.+ +.+++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 346788888888888776543211 1234579999999999999999999987 7888998865432
Q ss_pred cc----------------ccCchh-HHHHHHHHHHHhCC-CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC
Q 004384 503 TM----------------WFGESE-ANVREIFDKARQSA-PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 564 (757)
Q Consensus 503 ~~----------------~~g~~e-~~i~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 564 (757)
+. ..|.+. .....+++...... |++|||||++.+....+ ..++..++..++.
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~ 158 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSE 158 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchhh
Confidence 11 112222 23445555554443 89999999999975421 2356677777765
Q ss_pred CCCCCeEEEEeeCCCC---CCCCccccCCCccc-eEEEecCCCHHHHHHHHHHhhccCC--C-CCccCHHHHHHHcCC--
Q 004384 565 MSAKKTVFIIGATNRP---DIIDPALLRPGRLD-QLIYIPLPDEDSRHQIFKACLRKSP--V-SKDVDLRALAKYTQG-- 635 (757)
Q Consensus 565 ~~~~~~v~vi~tTn~~---~~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~l~~~~--~-~~~~d~~~la~~~~g-- 635 (757)
. ...++.+|++||.+ +.+++.+.+ ||. ..+++++|+.++..+|++..+.... . -.+..+..+++.+..
T Consensus 159 ~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 159 V-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp C-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred c-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 5 34578888888877 467888887 775 5899999999999999998775321 1 112224556666541
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 004384 636 FSGADITEICQRACKYAIR 654 (757)
Q Consensus 636 ~sg~di~~~~~~a~~~a~~ 654 (757)
-+.+.+.++|..|+..|..
T Consensus 236 G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 236 GDARRALDLLRVSGEIAER 254 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3567777888888776654
No 105
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.57 E-value=3.5e-14 Score=154.06 Aligned_cols=219 Identities=23% Similarity=0.310 Sum_probs=145.7
Q ss_pred cccChHHHHHHHHHHHHccccChhhHh-hhCC-CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh-ccch
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFK-SIGV-KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK-LAGE 235 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~-~l~i-~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~-~~g~ 235 (757)
.|.|.+..++.+...+...+....... .... .++.++||+||||||||++|+++|..++.+++.+++.++... +.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 379999999999888853321111000 0111 256789999999999999999999999999999999887643 6665
Q ss_pred h-HHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCc---hHHHHHHHHHHHHHhhccc-----------------
Q 004384 236 S-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTH---GEVERRIVSQLLTLMDGLK----------------- 290 (757)
Q Consensus 236 ~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~~Ll~~l~~~~----------------- 290 (757)
. ...+..+|..+ ....+++|||||+|.+.+.+.... .....++...|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 44566666654 334568999999999987754332 2223457888999888421
Q ss_pred --CCCeEEEEEecCCC----------CC-----------------------------------CCHHhhccCCcceEEEe
Q 004384 291 --SRAHVIVIGATNRP----------NS-----------------------------------IDPALRRFGRFDREIDI 323 (757)
Q Consensus 291 --~~~~v~vI~atn~~----------~~-----------------------------------ld~~l~r~~rf~~~i~i 323 (757)
...++++|++++.. .. +.|.+.. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 11233444444421 11 5677766 99999999
Q ss_pred CCCCHHHHHHHHHH----Hh-------c--CCCC-CCchhhhHHhH--hcCCCchhHHHHHHHHHHHHHHHh
Q 004384 324 GVPDEVGRLEVLRI----HT-------K--NMKL-SDDVDLERIAK--DTHGYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 324 ~~p~~~~r~~il~~----~~-------~--~~~l-~~~~~l~~la~--~t~g~~~~dl~~l~~~a~~~~~~~ 379 (757)
.+|+.+++.+|+.. +. . ...+ ..+.-++.++. ....+..+.+.+++.++....+.+
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 99999999888874 11 1 1111 12233566665 345566788888888887766554
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.55 E-value=2.7e-15 Score=187.69 Aligned_cols=171 Identities=15% Similarity=0.215 Sum_probs=100.1
Q ss_pred hhhccCCCCCceeeeeeccCCccccccchhhHHHHhhh-----------------hccCCCCChhhhhhc---ccCCCCc
Q 004384 408 TALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQE-----------------TVQYPVEHPEKFEKF---GMSPSKG 467 (757)
Q Consensus 408 ~al~~~~p~~~~~~~~~~~~~~~~~i~g~~~~k~~l~~-----------------~i~~~~~~~~~~~~~---~~~~~~g 467 (757)
.++....|+.+++...+.|.++|++--.+..+.+.+.. ...++...+++-+-+ |+.+...
T Consensus 655 ~a~~~~~ps~L~e~~~~~~~v~~~~~~~i~~a~~~i~~~f~~~~~~~l~~~~~~~~~~i~TG~~eLD~llggGGl~~G~l 734 (2050)
T 3cmu_A 655 PNSTTGSTGSMGHTTGAMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRI 734 (2050)
T ss_dssp CCC----------------CCSTTHHHHHHHHHHHHHHHHCTTSEEEGGGCTTTSCCEECCSCHHHHHHHSSSSEETTSE
T ss_pred hhcccCCHHHHHhhhccccCCcHHHHHHHHHHHHHHHHhhccccccchhhhhhcccceeecCChHHHHHhccCCcCCCcE
Confidence 45666778888888889999999763334444333321 112333334333334 5777888
Q ss_pred eeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccc----cC--------chhHHHHHHHHHHHh----CCCeEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW----FG--------ESEANVREIFDKARQ----SAPCVL 528 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~----~g--------~~e~~i~~lf~~a~~----~~p~il 528 (757)
++|+|+||+|||+||..+|..+ +.+++++++.+....+ +| .++..+..++..++. ..|+++
T Consensus 735 ilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~LV 814 (2050)
T 3cmu_A 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 814 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCEE
Confidence 9999999999999999999876 3468888887655443 23 233446667766655 679999
Q ss_pred EEecccchhc-ccCC-CCCCCC-cchHHHHHHHHHhhcCCCCCCeEEEEeeCC
Q 004384 529 FFDELDSIAT-QRGS-SVGDAG-GAADRVLNQLLTEMDGMSAKKTVFIIGATN 578 (757)
Q Consensus 529 ~iDEid~l~~-~r~~-~~~~~~-~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn 578 (757)
|+|.+..+.. .+.. ..++.. +...|.+++++..|..+....++.||++..
T Consensus 815 IIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 815 VVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp EESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 9999999976 2210 001111 344677899998988877666777777654
No 107
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.55 E-value=2e-14 Score=153.42 Aligned_cols=183 Identities=19% Similarity=0.181 Sum_probs=129.1
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccC
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFG 507 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g 507 (757)
.+|++++|.+++++.+.+.+.. -..+..+|++||||||||++|+++|+.++.+++.+++++. +
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-----~ 85 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSK------------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-----K 85 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHT------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-----C
T ss_pred CCHHHHhCcHHHHHHHHHHHHc------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-----C
Confidence 5689999999999999887652 1234558888999999999999999999999999998763 1
Q ss_pred chhHHHHHHHHHHHhC-----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC
Q 004384 508 ESEANVREIFDKARQS-----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI 582 (757)
Q Consensus 508 ~~e~~i~~lf~~a~~~-----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ 582 (757)
...++..+...... .+.++||||+|.+.+ ....+.|+..|+.. ..++.+|++||.++.
T Consensus 86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------------~~~~~~L~~~le~~--~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------------AESQRHLRSFMEAY--SSNCSIIITANNIDG 148 (324)
T ss_dssp --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------------HHHHHHHHHHHHHH--GGGCEEEEEESSGGG
T ss_pred --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------------HHHHHHHHHHHHhC--CCCcEEEEEeCCccc
Confidence 34455544443222 568999999999841 23455666666543 245788889999999
Q ss_pred CCccccCCCccceEEEecCCCHHHHHHHHHHhh-------ccCCCCC-c-cCHHHHHHHcCCCCHHHHHHHHHHH
Q 004384 583 IDPALLRPGRLDQLIYIPLPDEDSRHQIFKACL-------RKSPVSK-D-VDLRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 583 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l-------~~~~~~~-~-~d~~~la~~~~g~sg~di~~~~~~a 648 (757)
+++++.+ ||. ++.|++|+.++|.+|++.++ .+.++.- + ..+..+++.+.| +.+++.+.++.+
T Consensus 149 l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 149 IIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp SCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHH
T ss_pred cCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 9999998 996 79999999999877665543 2223322 2 335667777654 334444444433
No 108
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=8.4e-14 Score=152.29 Aligned_cols=201 Identities=14% Similarity=0.132 Sum_probs=137.2
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCC--ceeeecCCCCChhHHHHHHHHHh----CCceEEEeCccccc
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSK--GVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLT 503 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~--gilL~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~~ 503 (757)
.+++.|.+...+.+...+..... + ..+. .++|+||||||||++++++++.+ +..++.+++....+
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~--------~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLR--------N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHH--------S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 36788888888877776542111 1 1223 79999999999999999999988 56788888765432
Q ss_pred c---------c-------cCchh-HHHHHHHHHHH-hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC
Q 004384 504 M---------W-------FGESE-ANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM 565 (757)
Q Consensus 504 ~---------~-------~g~~e-~~i~~lf~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~ 565 (757)
. . .+.+. .....+..... ...|.+||+||++.+ ....+..|+..++..
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--------------~~~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--------------APDILSTFIRLGQEA 152 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--------------CHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--------------chHHHHHHHHHHHhC
Confidence 1 0 11111 12222222222 245889999999997 135567777776554
Q ss_pred CC--CCeEEEEeeCCCC---CCCCccccCCCccce-EEEecCCCHHHHHHHHHHhhccC---CCCCccCHHHHHHHcC--
Q 004384 566 SA--KKTVFIIGATNRP---DIIDPALLRPGRLDQ-LIYIPLPDEDSRHQIFKACLRKS---PVSKDVDLRALAKYTQ-- 634 (757)
Q Consensus 566 ~~--~~~v~vi~tTn~~---~~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~l~~~---~~~~~~d~~~la~~~~-- 634 (757)
.. ..++.+|++||.+ +.+++.+.+ ||.. .+.|++++.++..++++..+... ..-.+..+..+++.+.
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 230 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQ 230 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBS
T ss_pred CCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhc
Confidence 32 1478888999988 678888877 8875 89999999999999999888641 1122334677788873
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHH
Q 004384 635 ------GFSGADITEICQRACKYAIRE 655 (757)
Q Consensus 635 ------g~sg~di~~~~~~a~~~a~~~ 655 (757)
+-+.+.+.++|+.|...|..+
T Consensus 231 ~~~~~~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 231 TPLDTNRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp STTCTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 226688889999888877553
No 109
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.54 E-value=1.3e-14 Score=162.03 Aligned_cols=192 Identities=14% Similarity=0.174 Sum_probs=115.9
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC--ceEEEeC-----cccccc
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKG-----PELLTM 504 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~-----~~l~~~ 504 (757)
.+.|.+++++.+...+. ...++||+||||||||++|+++|..++. +|..+.+ +++.+.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 35677777766554432 1357999999999999999999998743 4544443 333333
Q ss_pred ccCchhHHHHHHHHHHHhC---CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC--------CCCeEEE
Q 004384 505 WFGESEANVREIFDKARQS---APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------AKKTVFI 573 (757)
Q Consensus 505 ~~g~~e~~i~~lf~~a~~~---~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~v~v 573 (757)
+.+..... ...|..+... .++|+|||||+.+ ...+.+.|+..|+... .....++
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~--------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~i 152 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA--------------GPAILNTLLTAINERQFRNGAHVEKIPMRLL 152 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGC--------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh--------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhh
Confidence 33322111 1223222222 4679999999764 3567788888886321 1112256
Q ss_pred EeeCCCC-C--CCCccccCCCccceEEEecCCCH-HHHHHHHHHhhccC-------------------------CCCCcc
Q 004384 574 IGATNRP-D--IIDPALLRPGRLDQLIYIPLPDE-DSRHQIFKACLRKS-------------------------PVSKDV 624 (757)
Q Consensus 574 i~tTn~~-~--~ld~allrpgRf~~~i~~~~p~~-~~r~~Il~~~l~~~-------------------------~~~~~~ 624 (757)
|+|||++ + .+.+++++ ||...+++|+|+. +++..|++...... .++.+
T Consensus 153 I~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~- 229 (500)
T 3nbx_X 153 VAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH- 229 (500)
T ss_dssp EEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-
T ss_pred hhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-
Confidence 7777753 3 23458998 9999999999987 78899998765321 11111
Q ss_pred CHHHHHHH---------cCCCCHHHHHHHHHHHHHHHHHHH
Q 004384 625 DLRALAKY---------TQGFSGADITEICQRACKYAIREN 656 (757)
Q Consensus 625 d~~~la~~---------~~g~sg~di~~~~~~a~~~a~~~~ 656 (757)
-++.+++. ..|.|.+.+..+++.|...|..+.
T Consensus 230 v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 230 VFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 12223322 247788888888887766666543
No 110
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.54 E-value=2.4e-14 Score=139.82 Aligned_cols=160 Identities=23% Similarity=0.392 Sum_probs=114.8
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+..|+++.|.+++++++.+.+.. ..+.+++|+||||||||++++.++..+ +..++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 445688899999998888777543 235679999999999999999999986 677888
Q ss_pred Eechhhh--hhccchhHHHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 223 INGPEIM--SKLAGESESNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 223 v~~~~l~--~~~~g~~~~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
+++..+. ..+.+.....+..+++.... ..+.+|+|||++.+.+....... ..+...+..+++ ..++.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~l~~~~~----~~~~~~i~ 156 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA---MDAGNMLKPALA----RGELHCVG 156 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C---CCCHHHHHHHHH----TTSCCEEE
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch---HHHHHHHHHhhc----cCCeEEEE
Confidence 8887765 34455566677777776644 55789999999999765321110 011223333332 24567788
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHH
Q 004384 300 ATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVL 335 (757)
Q Consensus 300 atn~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 335 (757)
+++.+. .+++++.+ ||. .+.++.|+.+++.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 157 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred eCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 888765 78999998 887 6899999999998765
No 111
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=7.4e-14 Score=150.72 Aligned_cols=186 Identities=19% Similarity=0.194 Sum_probs=129.7
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC------CceEEEeCcc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISVKGPE 500 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~------~~~i~v~~~~ 500 (757)
...|+++.|.+++++.+...+... ...+++|+||||||||++|+++|+.++ ..++.+++++
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSA-------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCT-------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcC-------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 456889999999999888776531 113499999999999999999998854 3577787766
Q ss_pred ccccccCchhHHHHHHHHHHH----------------hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcC
Q 004384 501 LLTMWFGESEANVREIFDKAR----------------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDG 564 (757)
Q Consensus 501 l~~~~~g~~e~~i~~lf~~a~----------------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~ 564 (757)
..+ ...++..+.... ...+.++|+||+|.+.. ...+.|+..|+.
T Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------------~~~~~Ll~~le~ 159 (353)
T 1sxj_D 100 ERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------------DAQSALRRTMET 159 (353)
T ss_dssp CCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------------HHHHHHHHHHHH
T ss_pred ccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------------HHHHHHHHHHHh
Confidence 421 112222211111 12457999999999743 334666766765
Q ss_pred CCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHH
Q 004384 565 MSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITE 643 (757)
Q Consensus 565 ~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~ 643 (757)
... +..+|++||.++.+++++.+ |+. .+.|++|+.++...+++..+.+.++. .+..+..+++.+.| +.+.+.+
T Consensus 160 ~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~ 233 (353)
T 1sxj_D 160 YSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGIT 233 (353)
T ss_dssp TTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHH
T ss_pred cCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 433 45566678999999999998 887 89999999999999999988665443 22346777887775 4566666
Q ss_pred HHHHHHHH
Q 004384 644 ICQRACKY 651 (757)
Q Consensus 644 ~~~~a~~~ 651 (757)
+++.++..
T Consensus 234 ~l~~~~~~ 241 (353)
T 1sxj_D 234 LLQSASKG 241 (353)
T ss_dssp HHHHTHHH
T ss_pred HHHHHHHh
Confidence 66655544
No 112
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.53 E-value=4.6e-15 Score=144.31 Aligned_cols=151 Identities=21% Similarity=0.330 Sum_probs=109.9
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh----------CCceEEEe
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISVK 497 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~----------~~~~i~v~ 497 (757)
..|+++.|.+...+.+.+.+.. ....+++|+||||||||++|++++..+ +.+++.++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred cccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 4577888888877777665432 224579999999999999999999987 67788888
Q ss_pred Ccccc--ccccCchhHHHHHHHHHHHhC-CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 498 GPELL--TMWFGESEANVREIFDKARQS-APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 498 ~~~l~--~~~~g~~e~~i~~lf~~a~~~-~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
...+. ..+.+.....+..++..+... .++++||||++.+.+.+.... . ...+.+.|+..++. .++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~----~~~~~~~l~~~~~~----~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE-G----ALDAGNILKPMLAR----GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT-T----SCCTHHHHHHHHHT----TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc-c----chHHHHHHHHHHhc----CCeeEE
Confidence 77665 335566667788888877665 678999999999986543211 1 11233334444432 457889
Q ss_pred eeCCCCC-----CCCccccCCCccceEEEecCCC
Q 004384 575 GATNRPD-----IIDPALLRPGRLDQLIYIPLPD 603 (757)
Q Consensus 575 ~tTn~~~-----~ld~allrpgRf~~~i~~~~p~ 603 (757)
++||.++ .+|+++.+ ||+ .+++++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 9998875 68999999 999 49999986
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.52 E-value=3.6e-13 Score=143.75 Aligned_cols=194 Identities=16% Similarity=0.300 Sum_probs=128.0
Q ss_pred CCCccccc-C--hHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004384 154 EVGYDDVG-G--VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 227 (757)
Q Consensus 154 ~~~~~~i~-G--~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~ 227 (757)
+.+|+++. | .......++.++..+- ..+.+++|+||||||||||++++++.+ +..++.+++.+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~-----------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLG-----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTT-----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcC-----------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 44677765 3 4444555555554421 235689999999999999999999988 88899999887
Q ss_pred hhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--
Q 004384 228 IMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN-- 305 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~-- 305 (757)
+...+.+.........|.... ..+++|||||++.+..+. .....++..++........+|+++++.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~---------~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE---------RTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH---------HHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh---------HHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 765544433222222233322 247899999999986431 11233444444433344567777777765
Q ss_pred -CCCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhcC--CCCCCchhhhHHhHhcCCCchhHHHHHHHHHHH
Q 004384 306 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYVGADLAALCTEAAL 374 (757)
Q Consensus 306 -~ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 374 (757)
.+++.+.+ ||. ..+.+++ +.+++.++++.++.. ..+. +..++.++..+ | ..+++..++..+..
T Consensus 146 ~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~-~~~l~~l~~~~-g-~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 146 DGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELR-KEVIDYLLENT-K-NVREIEGKIKLIKL 213 (324)
T ss_dssp TTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHC-S-SHHHHHHHHHHHHH
T ss_pred HHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHhC-C-CHHHHHHHHHHHHH
Confidence 67899988 665 6789999 999999999987653 3333 33478888888 4 45666666655543
No 114
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.50 E-value=1.3e-13 Score=154.26 Aligned_cols=185 Identities=26% Similarity=0.385 Sum_probs=129.4
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++++.|.++.++.+.+.+.. ....++||+||||||||++++++|..+ +..++.
T Consensus 175 r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 445688999999999998887754 224579999999999999999999997 667787
Q ss_pred EechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004384 223 INGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATN 302 (757)
Q Consensus 223 v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn 302 (757)
+++. ..+.|+.+..++.+|..+....+.||||| . .. . ..+.+......+.+.+|++||
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~-----~~-----~----a~~~L~~~L~~g~v~vI~at~ 299 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A-----AI-----D----ASNILKPSLARGELQCIGATT 299 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------CCCTTSSSCEEEEECC
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C-----ch-----h----HHHHHHHhhcCCCEEEEecCC
Confidence 7776 56677777788999999998889999999 0 00 0 112223333456789999999
Q ss_pred CCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC----C-CCchhhhHHhHhcCCCch-----hHHHH
Q 004384 303 RPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK----L-SDDVDLERIAKDTHGYVG-----ADLAA 367 (757)
Q Consensus 303 ~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~----l-~~~~~l~~la~~t~g~~~-----~dl~~ 367 (757)
.++ .+++++++ ||. .+.++.|+.+++.+|++.+...+. + ..+..+..++..+.+|.. .....
T Consensus 300 ~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 300 LDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp TTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred HHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 887 68999998 996 599999999999999997765432 1 123346677776666554 35667
Q ss_pred HHHHHHHH
Q 004384 368 LCTEAALQ 375 (757)
Q Consensus 368 l~~~a~~~ 375 (757)
++.+++..
T Consensus 377 ll~~a~~~ 384 (468)
T 3pxg_A 377 LIDEAGSK 384 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666543
No 115
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.50 E-value=4.3e-13 Score=142.96 Aligned_cols=193 Identities=23% Similarity=0.337 Sum_probs=136.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
++.+.+|+++.|.+..++.+.+.+..... . -..+.+++|+||||||||++|++++..++.+++.+++..+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~-~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA-------R-KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------H-CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc-------c-CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 34566899999999999999888764210 0 124568999999999999999999999999999998876522
Q ss_pred hccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc----------------CCCe
Q 004384 231 KLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK----------------SRAH 294 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~----------------~~~~ 294 (757)
...+...|..+ ...+++|||||++.+... ....|+..++... ....
T Consensus 77 ------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-----------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 77 ------PGDLAAILANS-LEEGDILFIDEIHRLSRQ-----------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-----------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------hHHHHHHHHHh-ccCCCEEEEECCcccccc-----------hHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 12222223221 145789999999987521 2234555554321 0125
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHH
Q 004384 295 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEA 372 (757)
Q Consensus 295 v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a 372 (757)
+.+|++||.+..+++.+.+ ||...+.++.|+.+++.+++..+....... ++..+..++..+.|+. +.+..++..+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~-r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTM-RVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH-HHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH-HHHHHHHHHH
Confidence 7899999999999988887 888899999999999999998877654332 2345778888876654 5555555544
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.50 E-value=9.6e-14 Score=173.93 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=84.3
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccc----cccc------------CchhHHHHHHHHHHH
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----TMWF------------GESEANVREIFDKAR 521 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~----~~~~------------g~~e~~i~~lf~~a~ 521 (757)
|+.++++++|+||||||||+||.+++.+. +.....++..+.. .... ...++.++.+++.++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 57888899999999999999999998875 3334444433221 1112 245678889999999
Q ss_pred hCCCeEEEEecccchhccc---CCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeC
Q 004384 522 QSAPCVLFFDELDSIATQR---GSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGAT 577 (757)
Q Consensus 522 ~~~p~il~iDEid~l~~~r---~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT 577 (757)
...|++|||||++.+.+.+ +...++..+...|+++++|.+|.+.....+++||.+.
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 9999999999999988753 2221111122578999999999988777777666654
No 117
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.49 E-value=2.6e-13 Score=144.17 Aligned_cols=188 Identities=21% Similarity=0.249 Sum_probs=130.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l 501 (757)
...|+++.|.+.+++.+...+.. + . ..+++|+||||||||++|++++..+ +.+++.+++++.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 79 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVER-----------K-N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE 79 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTT-----------T-C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST
T ss_pred CCCHHHHhCCHHHHHHHHHHHhC-----------C-C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc
Confidence 35688999999999998877643 1 1 1249999999999999999999986 346788887764
Q ss_pred cccccCchhHHHHHHHHHH-H-hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 502 LTMWFGESEANVREIFDKA-R-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a-~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
.+ .......+....... . ...+.++++||+|.+.. ...+.|+..|+.. ..++.+|++||.
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~~~~~ 141 (319)
T 2chq_A 80 RG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------------DAQAALRRTMEMY--SKSCRFILSCNY 141 (319)
T ss_dssp TC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------------HHHHTTGGGTSSS--SSSEEEEEEESC
T ss_pred cC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEEEeCC
Confidence 32 111112222222110 1 24478999999999732 3456677777653 346788888999
Q ss_pred CCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 580 PDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 580 ~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
++.+++++.+ |+. .+.|++|+.+++.++++..+++.++.-+ ..+..+++.+.| +.+.+.++++.++
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999998 886 8999999999999999999877655422 235566655544 4455555554443
No 118
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.49 E-value=5.3e-13 Score=148.06 Aligned_cols=172 Identities=19% Similarity=0.299 Sum_probs=118.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
+.+++|+||||||||||++++++.+ +..++.+++.++...+...........|.......+.+|||||++.+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~ 209 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK 209 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence 5679999999999999999999988 77889999887655443322221112233333336789999999998753
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCC---CCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhc-
Q 004384 267 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNS---IDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTK- 340 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~---ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~- 340 (757)
. .....|+..++.+...+..+|+++.+.+.. +++.+.+ ||. ..+.++.|+.++|.+|++..+.
T Consensus 210 ~---------~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 210 T---------GVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp H---------HHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred h---------HHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 112345555554444445666666555554 7888887 664 6789999999999999987764
Q ss_pred -CCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHH
Q 004384 341 -NMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQC 376 (757)
Q Consensus 341 -~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 376 (757)
++.+.++ .+..++..+.| ..+++..++..+...+
T Consensus 279 ~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 279 EHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred cCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 3444444 37888888765 5667777777665544
No 119
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.47 E-value=7e-14 Score=118.06 Aligned_cols=86 Identities=16% Similarity=0.357 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccc
Q 004384 603 DEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDE 682 (757)
Q Consensus 603 ~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (757)
|.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-------------------------- 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-------------------------- 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS--------------------------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 668999999999999999999999999999999999999999999999999875
Q ss_pred cccccHHHHHHHHhhcCCCCCH-HHHHHHHHHH
Q 004384 683 VSEIKAAHFEESMKFARRSVSD-ADIRKYQAFA 714 (757)
Q Consensus 683 ~~~i~~~~~~~a~~~~~~s~~~-~~~~~y~~~~ 714 (757)
...|+++||..|++++.+++.. .....|..|.
T Consensus 56 ~~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 56 RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp CSSBCHHHHHHHHHHHTC---------------
T ss_pred cccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 2369999999999999998864 5578888884
No 120
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.47 E-value=3.5e-14 Score=118.92 Aligned_cols=82 Identities=30% Similarity=0.428 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccc
Q 004384 603 DEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDE 682 (757)
Q Consensus 603 ~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (757)
|.++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-------------------------- 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-------------------------- 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC--------------------------
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------
Confidence 789999999999999999889999999999999999999999999999998764
Q ss_pred cccccHHHHHHHHhhcCCCCCHHHHHHHH
Q 004384 683 VSEIKAAHFEESMKFARRSVSDADIRKYQ 711 (757)
Q Consensus 683 ~~~i~~~~~~~a~~~~~~s~~~~~~~~y~ 711 (757)
...|+++||..|+++++||++ +++++|+
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC-----------
T ss_pred cCCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 247999999999999999999 8888885
No 121
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.47 E-value=2.2e-14 Score=164.70 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=104.9
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEE----eCcccccccc-
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV----KGPELLTMWF- 506 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v----~~~~l~~~~~- 506 (757)
.+.|++.+|+.+...+.... ........+....++||+||||||||++|+++|..+...++.. ++.++....+
T Consensus 296 ~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred hhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 57789999888755443221 1111112233444799999999999999999999887655432 2223322211
Q ss_pred ----CchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC-----------CCCeE
Q 004384 507 ----GESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS-----------AKKTV 571 (757)
Q Consensus 507 ----g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~-----------~~~~v 571 (757)
|..... ...+..|. .+|+||||||.+. ....+.|+..|+... ...++
T Consensus 374 ~~~~g~~~~~-~G~l~~A~---~gil~IDEid~l~--------------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 374 EKGTGEYYLE-AGALVLAD---GGIAVIDEIDKMR--------------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp GGGTSSCSEE-ECHHHHHS---SSEECCTTTTCCC--------------SHHHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred cccccccccc-CCeeEecC---CCcEEeehhhhCC--------------HhHhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 111000 11222332 3599999999863 234567777776422 12467
Q ss_pred EEEeeCCCCC-------------CCCccccCCCccce-EEEecCCCHHHHHHHHHHhhccC
Q 004384 572 FIIGATNRPD-------------IIDPALLRPGRLDQ-LIYIPLPDEDSRHQIFKACLRKS 618 (757)
Q Consensus 572 ~vi~tTn~~~-------------~ld~allrpgRf~~-~i~~~~p~~~~r~~Il~~~l~~~ 618 (757)
.||+|||+++ .|++++++ |||. .+..+.|+.+ ...|.++.++..
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 8999999987 89999999 9985 5566778888 888888887653
No 122
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=6.3e-13 Score=141.39 Aligned_cols=184 Identities=17% Similarity=0.184 Sum_probs=130.6
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPEL 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l 501 (757)
...|+++.|.+.+.+.+...+.. + ..+ +++|+||||+|||++|++++..+ +..++.+++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKD-----------G-NMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHS-----------C-CCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC
T ss_pred CCCHHHHHCCHHHHHHHHHHHHc-----------C-CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc
Confidence 34688899999999988877542 1 122 39999999999999999999985 345777777653
Q ss_pred cccccCchhHHHHHHHHHHH-------hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 502 LTMWFGESEANVREIFDKAR-------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~-------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
. ....++.+++... ...+.++||||+|.+.. ...+.|+..++.. ..++.+|
T Consensus 84 ~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i 141 (323)
T 1sxj_B 84 R------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------------GAQQALRRTMELY--SNSTRFA 141 (323)
T ss_dssp C------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------------HHHHTTHHHHHHT--TTTEEEE
T ss_pred c------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------------HHHHHHHHHHhcc--CCCceEE
Confidence 2 1344555555444 33478999999999742 2345566666543 2456777
Q ss_pred eeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 575 GATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 575 ~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
++||.++.+++++.+ |+. .+.|++|+.++..++++..+++.++. .+..+..+++.+.| +.+.+.+++..++
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 788989999999987 876 89999999999999999988654433 22335677777765 4555555555444
No 123
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.46 E-value=1.3e-13 Score=134.02 Aligned_cols=153 Identities=25% Similarity=0.409 Sum_probs=108.6
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEE
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFC 222 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~ 222 (757)
.+-.++++.|.+++++.+.+.+.. ..+.+++|+||||||||++++.++..+ +..++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 345688899999988888776643 235679999999999999999999987 677888
Q ss_pred Eechhhhh--hccchhHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 223 INGPEIMS--KLAGESESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 223 v~~~~l~~--~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
+++..+.. .+.+.....+..++..+... .+.+|||||++.+...+...... ..+...|...++ ...+.+|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~--~~~~~~l~~~~~----~~~~~ii~ 157 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA--LDAGNILKPMLA----RGELRCIG 157 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS--CCTHHHHHHHHH----TTCSCEEE
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc--hHHHHHHHHHHh----cCCeeEEE
Confidence 88776653 24455566677777776654 67899999999997554311100 112233334443 24667888
Q ss_pred ecCCCC-----CCCHHhhccCCcceEEEeCCCC
Q 004384 300 ATNRPN-----SIDPALRRFGRFDREIDIGVPD 327 (757)
Q Consensus 300 atn~~~-----~ld~~l~r~~rf~~~i~i~~p~ 327 (757)
+++.+. .+++++++ ||.. +.++.|+
T Consensus 158 ~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 158 ATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp EECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred ecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 888664 68999998 8874 8888875
No 124
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=7.1e-13 Score=144.12 Aligned_cols=185 Identities=21% Similarity=0.319 Sum_probs=134.5
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc---------------
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN--------------- 492 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~--------------- 492 (757)
..|++++|.+++.+.|...+... ..+..++|+||+|+|||++|+++|+.+...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 80 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 80 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHH
T ss_pred CchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 46888999999999888776421 223458999999999999999999987542
Q ss_pred ---------eEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 493 ---------FISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 493 ---------~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
++.+.+.. ......++.+++.+.. ..+.|++|||+|.+. ....+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------------~~~~~~Ll 140 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALL 140 (373)
T ss_dssp HHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------------HHHHHHHH
T ss_pred HHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------------HHHHHHHH
Confidence 23333221 0112346677776653 346899999999873 24567777
Q ss_pred HhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCCc-cCHHHHHHHcCCCCH
Q 004384 560 TEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSKD-VDLRALAKYTQGFSG 638 (757)
Q Consensus 560 ~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~-~d~~~la~~~~g~sg 638 (757)
..++.. ..++++|++||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++.-+ ..+..+++.+.| +.
T Consensus 141 ~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~ 214 (373)
T 1jr3_A 141 KTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SL 214 (373)
T ss_dssp HHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CH
T ss_pred HHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CH
Confidence 777763 3467888888888889999887 77 68999999999999999998876554422 236678888866 77
Q ss_pred HHHHHHHHHHHH
Q 004384 639 ADITEICQRACK 650 (757)
Q Consensus 639 ~di~~~~~~a~~ 650 (757)
+++.+++..+..
T Consensus 215 r~~~~~l~~~~~ 226 (373)
T 1jr3_A 215 RDALSLTDQAIA 226 (373)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877653
No 125
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.45 E-value=1.4e-12 Score=139.21 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=127.0
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhh
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMS 230 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~ 230 (757)
+..+.+|+++.|.++.++.+++.+... ..+..+|++||||||||++++++++.++..++.+++++..
T Consensus 19 k~rP~~~~~ivg~~~~~~~l~~~l~~~------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~- 85 (324)
T 3u61_B 19 KYRPSTIDECILPAFDKETFKSITSKG------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK- 85 (324)
T ss_dssp HSCCCSTTTSCCCHHHHHHHHHHHHTT------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-
T ss_pred hhCCCCHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-
Confidence 456778999999999999998887631 2345688889999999999999999999999999976531
Q ss_pred hccchhHHHHHHHHHHHHhc-----CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC
Q 004384 231 KLAGESESNLRKAFEEAEKN-----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN 305 (757)
Q Consensus 231 ~~~g~~~~~l~~vf~~a~~~-----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~ 305 (757)
...++..+...... .+.++||||+|.+.. ......|+..++... ..+.+|++||.+.
T Consensus 86 ------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~~--~~~~iI~~~n~~~ 147 (324)
T 3u61_B 86 ------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAYS--SNCSIIITANNID 147 (324)
T ss_dssp ------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHHG--GGCEEEEEESSGG
T ss_pred ------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhCC--CCcEEEEEeCCcc
Confidence 33445444443332 568999999998851 112345666666543 3567778999999
Q ss_pred CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh---------cCCCCCCchhhhHHhHhcCCCch
Q 004384 306 SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT---------KNMKLSDDVDLERIAKDTHGYVG 362 (757)
Q Consensus 306 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~---------~~~~l~~~~~l~~la~~t~g~~~ 362 (757)
.+++++++ |+ ..+.++.|+.+++.+|++... .++.+.+...+..++..+.|...
T Consensus 148 ~l~~~l~s--R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R 210 (324)
T 3u61_B 148 GIIKPLQS--RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR 210 (324)
T ss_dssp GSCTTHHH--HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTT
T ss_pred ccCHHHHh--hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHH
Confidence 99999998 77 469999999998876654332 12333331446777777666443
No 126
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.44 E-value=1.4e-12 Score=142.18 Aligned_cols=220 Identities=20% Similarity=0.246 Sum_probs=132.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHh-----------------hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFK-----------------SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFF 220 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~-----------------~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~ 220 (757)
+.|+|+++.++.|...+...+....... .-...++.+++|+||||||||++|+++|..++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999888743322221100 01123566799999999999999999999999999
Q ss_pred EEEechhhh-hhccchh-HHHHHHHHHHH----HhcCCeEEEEcccccccCCCCCCchHH---HHHHHHHHHHHhhccc-
Q 004384 221 FCINGPEIM-SKLAGES-ESNLRKAFEEA----EKNAPSIIFIDEIDSIAPKREKTHGEV---ERRIVSQLLTLMDGLK- 290 (757)
Q Consensus 221 ~~v~~~~l~-~~~~g~~-~~~l~~vf~~a----~~~~p~il~iDEid~l~~~~~~~~~~~---~~~~~~~Ll~~l~~~~- 290 (757)
+.+++..+. ..+.|.. ...+...+... ....++++||||++.+...+....... ...+...|+..+++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999988764 2343432 33444554432 233578999999999987643221111 1236677888887531
Q ss_pred ------------------CCCeEEEEEecCCC-----------------------------------------CCCCHHh
Q 004384 291 ------------------SRAHVIVIGATNRP-----------------------------------------NSIDPAL 311 (757)
Q Consensus 291 ------------------~~~~v~vI~atn~~-----------------------------------------~~ld~~l 311 (757)
...++++|+++|.. ..+.|.+
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 11345666666520 1245666
Q ss_pred hccCCcceEEEeCCCCHHHHHHHHHH----H-------h--cCCCC-CCchhhhHHhHhcC--CCchhHHHHHHHHHHHH
Q 004384 312 RRFGRFDREIDIGVPDEVGRLEVLRI----H-------T--KNMKL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQ 375 (757)
Q Consensus 312 ~r~~rf~~~i~i~~p~~~~r~~il~~----~-------~--~~~~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~ 375 (757)
.+ |++..+.+++++.++...|+.. + . ....+ ..+..+..++.... ....+.+..++..+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 65 8888899999999988888852 1 1 11111 12233566666543 35677888888777766
Q ss_pred HHHh
Q 004384 376 CIRE 379 (757)
Q Consensus 376 ~~~~ 379 (757)
.+.+
T Consensus 339 ~~~~ 342 (376)
T 1um8_A 339 IMFD 342 (376)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 5543
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.43 E-value=2.8e-12 Score=139.86 Aligned_cols=201 Identities=19% Similarity=0.233 Sum_probs=132.5
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---------CCeEEEEechh
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPE 227 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---------~~~~~~v~~~~ 227 (757)
.+++.|.+++++.+.+.+...+. -..+.+++|+||||||||++++.++..+ +..++.++|..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 47899999999998887653221 1346789999999999999999999988 77888999864
Q ss_pred hhhh----------------ccchhH-HHHHHHHHHHHh-cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc
Q 004384 228 IMSK----------------LAGESE-SNLRKAFEEAEK-NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL 289 (757)
Q Consensus 228 l~~~----------------~~g~~~-~~l~~vf~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~ 289 (757)
..+. ..+... ..+..+++.... ..+.+|||||++.+.... .....+..++..+...
T Consensus 89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQEL 162 (387)
T ss_dssp SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGGCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchhhc
Confidence 3211 011112 223444444433 347899999999886432 0123344445544433
Q ss_pred cCCCeEEEEEecCCC---CCCCHHhhccCCcce-EEEeCCCCHHHHHHHHHHHhcC----CCCCCchhhhHHhHhcC---
Q 004384 290 KSRAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN----MKLSDDVDLERIAKDTH--- 358 (757)
Q Consensus 290 ~~~~~v~vI~atn~~---~~ld~~l~r~~rf~~-~i~i~~p~~~~r~~il~~~~~~----~~l~~~~~l~~la~~t~--- 358 (757)
....++.+|+++|.+ +.+++.+.+ ||.. .+.+++|+.++..++++..+.. ..+.+ ..++.++..+.
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP-DVVPLCAALAAREH 239 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS-SHHHHHHHHHHSSS
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHHhc
Confidence 214577888899877 678888887 7764 8999999999999999876542 23333 34677777776
Q ss_pred CCchhHHHHHHHHHHHHH
Q 004384 359 GYVGADLAALCTEAALQC 376 (757)
Q Consensus 359 g~~~~dl~~l~~~a~~~~ 376 (757)
|. ...+..++..+...+
T Consensus 240 G~-~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 240 GD-ARRALDLLRVAGEIA 256 (387)
T ss_dssp CC-HHHHHHHHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHHHH
Confidence 54 445566666665444
No 128
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.43 E-value=8.1e-12 Score=124.72 Aligned_cols=183 Identities=20% Similarity=0.209 Sum_probs=124.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEech
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGP 226 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~ 226 (757)
..+..|+++.|.++.++.+.+.+... ...+++|+||+|||||++++.++..+ ...++.+++.
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVERK-------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHTT-------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhCC-------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 45667889999999999998887641 23359999999999999999999876 3456777765
Q ss_pred hhhhhccchhHHHHHHHHHHHH------hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEe
Q 004384 227 EIMSKLAGESESNLRKAFEEAE------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGA 300 (757)
Q Consensus 227 ~l~~~~~g~~~~~l~~vf~~a~------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~a 300 (757)
.... ...+...+.... ...+.+|+|||++.+.+. ....|+..++... ..+.+|++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~--~~~~~i~~ 138 (226)
T 2chg_A 78 DERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYS--KSCRFILS 138 (226)
T ss_dssp CTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTT--TTEEEEEE
T ss_pred cccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhcC--CCCeEEEE
Confidence 4321 122222222222 246789999999987532 2345566665532 35677788
Q ss_pred cCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--CCCCCchhhhHHhHhcCCCchhHHHHHHHH
Q 004384 301 TNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYVGADLAALCTE 371 (757)
Q Consensus 301 tn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~~~dl~~l~~~ 371 (757)
++.+..+++.+.+ |+. .+.++.|+.++..+++...+.. ..+ ++..+..++..+.|. ...+..++..
T Consensus 139 ~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~g~-~r~l~~~l~~ 206 (226)
T 2chg_A 139 CNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGD-FRKAINALQG 206 (226)
T ss_dssp ESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred eCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 8988889999987 775 8999999999999998876543 233 233466777776653 3333343333
No 129
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=114.76 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=71.3
Q ss_pred ecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccc
Q 004384 599 IPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDA 678 (757)
Q Consensus 599 ~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (757)
-.+||.++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~---------------------- 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER---------------------- 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc----------------------
Confidence 4689999999999999999999899999999999999999999999999999999875
Q ss_pred cccccccccHHHHHHHHhhcCCC
Q 004384 679 AEDEVSEIKAAHFEESMKFARRS 701 (757)
Q Consensus 679 ~~~~~~~i~~~~~~~a~~~~~~s 701 (757)
...|+++||..|+++++|.
T Consensus 66 ----~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ----RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ----CSEECHHHHHHHHHHHHCC
T ss_pred ----CCCCCHHHHHHHHHHHccC
Confidence 2479999999999998775
No 130
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.43 E-value=2e-12 Score=136.85 Aligned_cols=202 Identities=18% Similarity=0.269 Sum_probs=132.8
Q ss_pred ccccChHHHHHHHHHHHHccc---cChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh
Q 004384 158 DDVGGVRKQMAQIRELVELPL---RHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK 231 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l---~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~ 231 (757)
.++.|.+..++.+...+.... .++ -.+..+++|+||||||||++|+++++.+ +.+++.+++..+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~-------~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~ 89 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDP-------NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK 89 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCT-------TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCC-------CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence 458899999999888776421 111 1234579999999999999999999987 455888988765322
Q ss_pred c-----cchh----HHH-HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC---------C
Q 004384 232 L-----AGES----ESN-LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS---------R 292 (757)
Q Consensus 232 ~-----~g~~----~~~-l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~---------~ 292 (757)
. .|.. ... ...+.........+++||||++.+.+ .+...|+..++...- -
T Consensus 90 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~~~~~~~~~~~ 158 (311)
T 4fcw_A 90 HAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRLTDSHGRTVDF 158 (311)
T ss_dssp THHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEECTTSCEEEC
T ss_pred ccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEEEcCCCCEEEC
Confidence 1 1100 000 01222333334458999999998742 344667777754220 1
Q ss_pred CeEEEEEecCC--------------------------CCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC----
Q 004384 293 AHVIVIGATNR--------------------------PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---- 342 (757)
Q Consensus 293 ~~v~vI~atn~--------------------------~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---- 342 (757)
.++++|++||. ...+++.+.+ ||+..+.+++|+.+++..|++.+++..
T Consensus 159 ~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~ 236 (311)
T 4fcw_A 159 RNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARL 236 (311)
T ss_dssp TTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHH
T ss_pred CCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHH
Confidence 25678889998 3456777776 999999999999999999988654321
Q ss_pred -----CC-CCchhhhHHhHhcC--CCchhHHHHHHHHHHHHHHHh
Q 004384 343 -----KL-SDDVDLERIAKDTH--GYVGADLAALCTEAALQCIRE 379 (757)
Q Consensus 343 -----~l-~~~~~l~~la~~t~--g~~~~dl~~l~~~a~~~~~~~ 379 (757)
.+ ..+..++.++.... .+..+++..++..+...++.+
T Consensus 237 ~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 237 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp HTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 11 12334666776554 567788888888776655443
No 131
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.42 E-value=6.1e-12 Score=127.57 Aligned_cols=187 Identities=14% Similarity=0.127 Sum_probs=120.8
Q ss_pred CCcccccC---hHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC---CeEEEEechhh
Q 004384 155 VGYDDVGG---VRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEI 228 (757)
Q Consensus 155 ~~~~~i~G---~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~---~~~~~v~~~~l 228 (757)
.+|+++.| .+..++.+..++.. ..+.+++|+||||||||+++++++..+. ..++.+++.++
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG-------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT-------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 56777765 34555656555543 2357899999999999999999998764 66788888776
Q ss_pred hhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeE-EEEEecCCCC--
Q 004384 229 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPN-- 305 (757)
Q Consensus 229 ~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v-~vI~atn~~~-- 305 (757)
....... ++. ...+.+|+|||++.+.... .....|+..++.......+ +|++++..+.
T Consensus 92 ~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~~---------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 92 ASISTAL--------LEG--LEQFDLICIDDVDAVAGHP---------LWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGSCGGG--------GTT--GGGSSEEEEETGGGGTTCH---------HHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHHHH--------HHh--ccCCCEEEEeccccccCCH---------HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 5433211 111 1346799999999885431 1123344454443333333 5555554444
Q ss_pred -CCCHHhhccCCcc--eEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHHHH
Q 004384 306 -SIDPALRRFGRFD--REIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAALQC 376 (757)
Q Consensus 306 -~ld~~l~r~~rf~--~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~ 376 (757)
.+++.+.+ ||. ..+.++.|+.+++.+++..+++..... .+..++.++..+.| ..+.+..++..+...+
T Consensus 153 ~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 153 GFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp TCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 44577777 664 889999999999999998876533221 23346778877755 5566777776666544
No 132
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.42 E-value=2.8e-12 Score=142.03 Aligned_cols=185 Identities=21% Similarity=0.267 Sum_probs=126.1
Q ss_pred cCCCCCcccccChHHHH---HHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004384 151 RLDEVGYDDVGGVRKQM---AQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 227 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~---~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~ 227 (757)
.+.+.+++++.|.++.+ ..++..+... ...+++|+|||||||||+++++++.++..++.+++..
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG-------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC-------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 45667899999999998 6666666531 1257999999999999999999999999999998643
Q ss_pred hhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEec--
Q 004384 228 IMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGAT-- 301 (757)
Q Consensus 228 l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~at-- 301 (757)
. ....++.++..+. ...+.+|||||+|.+.... ...|+..++. ..+++|++|
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-----------q~~LL~~le~----~~v~lI~att~ 143 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-----------QDAFLPHIED----GTITFIGATTE 143 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHT----TSCEEEEEESS
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-----------HHHHHHHHhc----CceEEEecCCC
Confidence 2 1233444554443 3467899999999885432 2345556654 345666655
Q ss_pred CCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCC-------C-CCchhhhHHhHhcCCCchhHHHHHHHHHH
Q 004384 302 NRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMK-------L-SDDVDLERIAKDTHGYVGADLAALCTEAA 373 (757)
Q Consensus 302 n~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-------l-~~~~~l~~la~~t~g~~~~dl~~l~~~a~ 373 (757)
|....+++++.+ |+. .+.+..|+.++...++...+.... + .++..++.++..+.|. .+.+..++..+.
T Consensus 144 n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd-~R~lln~Le~a~ 219 (447)
T 3pvs_A 144 NPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGD-ARRALNTLEMMA 219 (447)
T ss_dssp CGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSC-HHHHHHHHHHHH
T ss_pred CcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCC-HHHHHHHHHHHH
Confidence 333578999988 774 678999999999999987765421 1 1333467777776654 445555555554
Q ss_pred H
Q 004384 374 L 374 (757)
Q Consensus 374 ~ 374 (757)
.
T Consensus 220 ~ 220 (447)
T 3pvs_A 220 D 220 (447)
T ss_dssp H
T ss_pred H
Confidence 3
No 133
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.41 E-value=3e-13 Score=111.65 Aligned_cols=75 Identities=31% Similarity=0.563 Sum_probs=69.5
Q ss_pred cCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccc
Q 004384 600 PLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAA 679 (757)
Q Consensus 600 ~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (757)
|+||.++|.+||+.++++.++..++|+..||+.|+||||+||.++|++|++.|+++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~----------------------- 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER----------------------- 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------------
Confidence 789999999999999999998889999999999999999999999999999999874
Q ss_pred ccccccccHHHHHHHHhhcCC
Q 004384 680 EDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 680 ~~~~~~i~~~~~~~a~~~~~~ 700 (757)
...|+++||..|++++..
T Consensus 58 ---~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 58 ---RVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ---CSEECHHHHHHHHHHHHC
T ss_pred ---CCCCCHHHHHHHHHHHHh
Confidence 247999999999998744
No 134
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.4e-12 Score=138.96 Aligned_cols=184 Identities=23% Similarity=0.311 Sum_probs=128.9
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC-----CceEEEeCccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISVKGPEL 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~-----~~~i~v~~~~l 501 (757)
...|++++|.+++++.+...+.. + ...+++|+||||+|||++|++++..+. ..++.+++++.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~ 87 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDE 87 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCH
T ss_pred CCCHHHhhCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeecccc
Confidence 35688999999999988877542 1 123499999999999999999999863 34777777654
Q ss_pred cccccCchhHHHHHHHHH-HH-----hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 502 LTMWFGESEANVREIFDK-AR-----QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~-a~-----~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
.+ ...++..+.. +. ...+.++++||+|.+.. ...+.|+..|+.. ..++.+|+
T Consensus 88 ~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------------~~~~~L~~~le~~--~~~~~~i~ 145 (327)
T 1iqp_A 88 RG------INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------------DAQQALRRTMEMF--SSNVRFIL 145 (327)
T ss_dssp HH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------------HHHHHHHHHHHHT--TTTEEEEE
T ss_pred Cc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------------HHHHHHHHHHHhc--CCCCeEEE
Confidence 22 1112222221 11 14478999999999732 3456667666653 33567788
Q ss_pred eCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 576 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS-KDVDLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 576 tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
+||.++.+++++.+ |+. .+.|++|+.++..++++..+++.++. .+..+..+++.+.| +.+.+.++++.+.
T Consensus 146 ~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 146 SCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 89999999999987 887 89999999999999999988766543 22235667777755 5566666665554
No 135
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.40 E-value=1.2e-12 Score=148.56 Aligned_cols=194 Identities=22% Similarity=0.301 Sum_probs=125.9
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHcc-ccChhhHhhhCCC---CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELP-LRHPQLFKSIGVK---PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 226 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~-l~~~~~~~~l~i~---~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~ 226 (757)
+..+.+|++++|.++.++.+++++... ..++..++..+.. ++.++||+||||||||++|+++|.+++..++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 456778999999999999999888641 1112223333332 557899999999999999999999999999999987
Q ss_pred hhhhhccchhH-------HHHHHHHHHH-----HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCe
Q 004384 227 EIMSKLAGESE-------SNLRKAFEEA-----EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAH 294 (757)
Q Consensus 227 ~l~~~~~g~~~-------~~l~~vf~~a-----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~ 294 (757)
+.......... ..+..+|..+ ....+.+|||||+|.+..... ..+..|+.+++.. ...
T Consensus 112 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~--~~~ 181 (516)
T 1sxj_A 112 DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKT--STP 181 (516)
T ss_dssp SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHC--SSC
T ss_pred CcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhc--CCC
Confidence 75432211000 0011222222 225678999999999976432 1234566666542 234
Q ss_pred EEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--CCCCCCchhhhHHhHhcCC
Q 004384 295 VIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHG 359 (757)
Q Consensus 295 v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~l~~~~~l~~la~~t~g 359 (757)
+++++++.....+.+ ++ |+...+.++.|+.+++.+++...+. ++.+.++ .+..++..+.|
T Consensus 182 iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G 243 (516)
T 1sxj_A 182 LILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG 243 (516)
T ss_dssp EEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT
T ss_pred EEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC
Confidence 555554433333432 33 4557899999999999998876543 3444443 47888888765
No 136
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.1e-11 Score=135.19 Aligned_cols=192 Identities=20% Similarity=0.198 Sum_probs=127.1
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-----------CCeEEEEech
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----------GAFFFCINGP 226 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-----------~~~~~~v~~~ 226 (757)
+++.|.+++++.+.+.+...+.. ..+.+++|+||||||||++++.++..+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 77999999999998877542211 345689999999999999999999987 8889999976
Q ss_pred hhh-h----------hc-------cch-hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhh
Q 004384 227 EIM-S----------KL-------AGE-SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMD 287 (757)
Q Consensus 227 ~l~-~----------~~-------~g~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~ 287 (757)
... . .. .+. ....+..++....... .+|||||+|.+...... .. .+..++.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~-------~~--~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGG-------DI--VLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTS-------HH--HHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCC-------ce--eHHHHhc
Confidence 543 1 00 011 1223344444443333 49999999998654211 11 0222222
Q ss_pred cccCCCeEEEEEecCCC---CCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC----CCCCCchhhhHHhHhcCCC
Q 004384 288 GLKSRAHVIVIGATNRP---NSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN----MKLSDDVDLERIAKDTHGY 360 (757)
Q Consensus 288 ~~~~~~~v~vI~atn~~---~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~----~~l~~~~~l~~la~~t~g~ 360 (757)
.. .++.+|++++.+ +.+++.+.+ ||...+.+++|+.++..+++...+.. ..+ ++..++.++..+.+.
T Consensus 161 ~~---~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 161 SD---ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKE 234 (384)
T ss_dssp SS---SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTT
T ss_pred CC---cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhc
Confidence 22 578888899877 678898887 77779999999999999999877642 223 333467777777622
Q ss_pred c--hhHHHHHHHHHHH
Q 004384 361 V--GADLAALCTEAAL 374 (757)
Q Consensus 361 ~--~~dl~~l~~~a~~ 374 (757)
. ...+..++..+..
T Consensus 235 ~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 2 2334445555543
No 137
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.39 E-value=2.8e-12 Score=134.58 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=110.2
Q ss_pred ccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----------CCeEEEEechhhh
Q 004384 160 VGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----------GAFFFCINGPEIM 229 (757)
Q Consensus 160 i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----------~~~~~~v~~~~l~ 229 (757)
+.|-++++++|..++.-.+ .-..+.+++|+||||||||++++.++.++ ...++.++|..+.
T Consensus 22 L~~Re~E~~~i~~~L~~~i---------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~ 92 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL---------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELA 92 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC
T ss_pred cCCHHHHHHHHHHHHHHHh---------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccC
Confidence 4555666666665554322 22567889999999999999999999988 3467899986543
Q ss_pred h----------hc------cchhHHHHHHHHHHH--HhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004384 230 S----------KL------AGESESNLRKAFEEA--EKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 291 (757)
Q Consensus 230 ~----------~~------~g~~~~~l~~vf~~a--~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 291 (757)
+ .. .+.....+...|... ....+.|+++||+|.+. . +.++..|+.+... .
T Consensus 93 t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~---------q~~L~~l~~~~~~--~ 160 (318)
T 3te6_A 93 GMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S---------EKILQYFEKWISS--K 160 (318)
T ss_dssp --HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C---------THHHHHHHHHHHC--S
T ss_pred CHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c---------chHHHHHHhcccc--c
Confidence 2 11 123455677778764 34567899999999997 1 1234444444332 3
Q ss_pred CCeEEEEEecCCCCCCCH----HhhccCCcc-eEEEeCCCCHHHHHHHHHHHhcC
Q 004384 292 RAHVIVIGATNRPNSIDP----ALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN 341 (757)
Q Consensus 292 ~~~v~vI~atn~~~~ld~----~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~ 341 (757)
..++.+|+++|..+..+. .+++ ||. ..+.+++++.++..+|++..++.
T Consensus 161 ~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 457899999998865443 3344 675 67999999999999999876543
No 138
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.39 E-value=9.7e-13 Score=136.10 Aligned_cols=194 Identities=22% Similarity=0.236 Sum_probs=113.9
Q ss_pred CccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC---CceEEEeCcccccc
Q 004384 428 VSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM 504 (757)
Q Consensus 428 ~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~~ 504 (757)
.+|++++|.+...+.+.+.+.... ....+++|+||||||||++|++++..+. .+|+.++++.+...
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 357788888887777665544211 1235699999999999999999999874 68999998876321
Q ss_pred -----ccCchhH-------HHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC------
Q 004384 505 -----WFGESEA-------NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS------ 566 (757)
Q Consensus 505 -----~~g~~e~-------~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~------ 566 (757)
.+|.... .....|..+ ..+++|||||+.+.. .+.+.|+..|+...
T Consensus 72 ~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~ 134 (265)
T 2bjv_A 72 LLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM--------------MVQEKLLRVIEYGELERVGG 134 (265)
T ss_dssp HHHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH--------------HHHHHHHHHHHHCEECCCCC
T ss_pred HHHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH--------------HHHHHHHHHHHhCCeecCCC
Confidence 1111000 011223333 346999999999742 34556666665321
Q ss_pred ---CCCeEEEEeeCCCC-------CCCCccccCCCccc-eEEEecCCCH--HHHHHHHHHhhcc----CCCCC--ccCH-
Q 004384 567 ---AKKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPDE--DSRHQIFKACLRK----SPVSK--DVDL- 626 (757)
Q Consensus 567 ---~~~~v~vi~tTn~~-------~~ld~allrpgRf~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~~--~~d~- 626 (757)
...++.||+|||.+ ..+++++.+ ||+ ..|.+|+.+. ++...+++.++++ .+... .++-
T Consensus 135 ~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (265)
T 2bjv_A 135 SQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTER 212 (265)
T ss_dssp --CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHH
T ss_pred cccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHH
Confidence 12357789999984 246788887 886 4566776654 5566666555533 33211 2333
Q ss_pred --HHHHHHcCCCCHHHHHHHHHHHHHH
Q 004384 627 --RALAKYTQGFSGADITEICQRACKY 651 (757)
Q Consensus 627 --~~la~~~~g~sg~di~~~~~~a~~~ 651 (757)
..|....-..+.+++.++++.+...
T Consensus 213 a~~~L~~~~~~gn~reL~~~l~~~~~~ 239 (265)
T 2bjv_A 213 ARETLLNYRWPGNIRELKNVVERSVYR 239 (265)
T ss_dssp HHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 3333333223567888888877654
No 139
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=2.9e-12 Score=138.35 Aligned_cols=187 Identities=16% Similarity=0.211 Sum_probs=125.1
Q ss_pred CCccccccchhhHHHHhhhhc-cCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh-CC-------------
Q 004384 427 NVSWEDIGGLENVKRELQETV-QYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC-QA------------- 491 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~-~~------------- 491 (757)
..+|+++.|.+.+.+.+...+ .. + ..+. ++|+||||+||||+++++|+.+ +.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~-----------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~ 76 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQP-----------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCT-----------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC---------
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhC-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeec
Confidence 346889999999999888775 21 1 1223 9999999999999999999964 21
Q ss_pred ---------------ceEEEeCccccccccCchhHHHHHHHHHHH--------------hCCCeEEEEecccchhcccCC
Q 004384 492 ---------------NFISVKGPELLTMWFGESEANVREIFDKAR--------------QSAPCVLFFDELDSIATQRGS 542 (757)
Q Consensus 492 ---------------~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~--------------~~~p~il~iDEid~l~~~r~~ 542 (757)
.++.+.+++.. ......++.+++.+. ...|.++++||++.+-
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~----- 147 (354)
T 1sxj_E 77 TASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT----- 147 (354)
T ss_dssp ---------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC-----
T ss_pred ccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC-----
Confidence 12222222110 001113555554432 2256799999999852
Q ss_pred CCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCC-
Q 004384 543 SVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVS- 621 (757)
Q Consensus 543 ~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~- 621 (757)
....+.|+..|+... .+..+|.+||.++.+.+++.+ |+ ..+.|++|+.++..++++..+++.++.
T Consensus 148 ---------~~~~~~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 148 ---------KDAQAALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ---------HHHHHHHHHHHHHST--TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ---------HHHHHHHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 234556666666543 356788888999999999987 88 789999999999999999988765543
Q ss_pred C-ccCHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004384 622 K-DVDLRALAKYTQGFSGADITEICQRACK 650 (757)
Q Consensus 622 ~-~~d~~~la~~~~g~sg~di~~~~~~a~~ 650 (757)
. +..+..+++.+.| +.+++.++++.+..
T Consensus 214 ~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 214 ETKDILKRIAQASNG-NLRVSLLMLESMAL 242 (354)
T ss_dssp CCSHHHHHHHHHHTT-CHHHHHHHHTHHHH
T ss_pred CcHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 1 3346778877765 55666666655543
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.37 E-value=9.4e-12 Score=125.96 Aligned_cols=188 Identities=19% Similarity=0.257 Sum_probs=128.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+..+..++++.|.++.++.+.+.+... ..+..++|+||+|+|||++++.++..+...
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 83 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 83 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 345557889999999999998877531 123479999999999999999999887431
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.++... ......+..+++... ...+.+|+|||++.+.+ .....|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l 146 (250)
T 1njg_A 84 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 146 (250)
T ss_dssp HHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHH
T ss_pred HHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHH
Confidence 12222111 112233455555432 23478999999998632 233556
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++.. ...+.+|.+|+.+..+++.+.+ |+ ..+.++.++.++..+++...+...... ++..++.+++.+.| .
T Consensus 147 ~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~ 220 (250)
T 1njg_A 147 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-S 220 (250)
T ss_dssp HHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-C
T ss_pred HHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-C
Confidence 6666653 3367788888888888888877 54 679999999999999998776433222 23457788888877 5
Q ss_pred hhHHHHHHHHHH
Q 004384 362 GADLAALCTEAA 373 (757)
Q Consensus 362 ~~dl~~l~~~a~ 373 (757)
...+..++..+.
T Consensus 221 ~~~~~~~~~~~~ 232 (250)
T 1njg_A 221 LRDALSLTDQAI 232 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666777666553
No 141
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.34 E-value=1.3e-12 Score=137.65 Aligned_cols=190 Identities=21% Similarity=0.271 Sum_probs=116.7
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc----
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM---- 504 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~---- 504 (757)
+++|.+...+.+.+.+.... ....++||+||||||||++|++++..+ +.+|+.++++.+...
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 45666666665555443211 234569999999999999999999976 568999998876431
Q ss_pred -ccC--------chhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCC---------
Q 004384 505 -WFG--------ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMS--------- 566 (757)
Q Consensus 505 -~~g--------~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~--------- 566 (757)
.+| ... .....|..+.. +++|||||+.+.. .+...|+..|+...
T Consensus 72 ~lfg~~~g~~tg~~~-~~~g~~~~a~~---g~L~LDEi~~l~~--------------~~q~~Ll~~l~~~~~~~~g~~~~ 133 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK-RREGRFVEADG---GTLFLDEIGDISP--------------LMQVRLLRAIQEREVQRVGSNQT 133 (304)
T ss_dssp HHTCCCSSCCC---C-CCCCHHHHHTT---SEEEEESCTTCCH--------------HHHHHHHHHHHSSBCCBTTBCCC
T ss_pred HhcCccccccCchhh-hhcCHHHhcCC---CEEEEeccccCCH--------------HHHHHHHHHHhcCEeeecCCccc
Confidence 111 111 12345555543 5999999999742 34566666666432
Q ss_pred CCCeEEEEeeCCCC-------CCCCccccCCCccc-eEEEecCCC--HHHHHHHHHHhhcc----CCCC-CccC---HHH
Q 004384 567 AKKTVFIIGATNRP-------DIIDPALLRPGRLD-QLIYIPLPD--EDSRHQIFKACLRK----SPVS-KDVD---LRA 628 (757)
Q Consensus 567 ~~~~v~vi~tTn~~-------~~ld~allrpgRf~-~~i~~~~p~--~~~r~~Il~~~l~~----~~~~-~~~d---~~~ 628 (757)
...++.||+|||++ ..+++++.. ||. ..|++|+.. .++...+++.++++ .+.. ..++ +..
T Consensus 134 ~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~ 211 (304)
T 1ojl_A 134 ISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDL 211 (304)
T ss_dssp CBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHH
T ss_pred ccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHH
Confidence 12357899999985 235566666 775 346666665 35556677666543 2211 1233 444
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Q 004384 629 LAKYTQGFSGADITEICQRACKYA 652 (757)
Q Consensus 629 la~~~~g~sg~di~~~~~~a~~~a 652 (757)
+....-.-+.+++.+++..|+..+
T Consensus 212 L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 212 LIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhC
Confidence 554442235678888888877654
No 142
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.33 E-value=3.5e-13 Score=112.27 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=51.8
Q ss_pred HHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccc
Q 004384 605 DSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVS 684 (757)
Q Consensus 605 ~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (757)
++|.+||+.++++.++..++|+..||+.|+|||||||.++|++|++.|+++. ..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~--------------------------~~ 54 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN--------------------------RY 54 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT--------------------------CS
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------------------------cC
Confidence 4789999999999998889999999999999999999999999999999874 23
Q ss_pred cccHHHHHHHHhhc-CCCCCHHHHHHHH
Q 004384 685 EIKAAHFEESMKFA-RRSVSDADIRKYQ 711 (757)
Q Consensus 685 ~i~~~~~~~a~~~~-~~s~~~~~~~~y~ 711 (757)
.|+++||..|++++ .++.+++++++|.
T Consensus 55 ~i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 55 VILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp EECHHHHHHHHHTTCC------------
T ss_pred CcCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 79999999999998 6889999998884
No 143
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.33 E-value=7.2e-11 Score=126.28 Aligned_cols=195 Identities=22% Similarity=0.335 Sum_probs=130.5
Q ss_pred CCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhh
Q 004384 152 LDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSK 231 (757)
Q Consensus 152 ~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~ 231 (757)
+..-.++++.|.+..++.+...+..... . + .++.+++|+||||||||||++++|+.++..+...+++.+..
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~-----~--~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~- 89 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKM-----R--G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK- 89 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHH-----H--T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHh-----c--C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-
Confidence 4445778888988888877766543110 0 1 24467999999999999999999999998877777654321
Q ss_pred ccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-------C---------CCeE
Q 004384 232 LAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-------S---------RAHV 295 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-------~---------~~~v 295 (757)
...+..++.. .....|+|+||++.+.+. +.+.|+..+.... . -..+
T Consensus 90 -----~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-----------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 90 -----QGDMAAILTS--LERGDVLFIDEIHRLNKA-----------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp -----HHHHHHHHHH--CCTTCEEEEETGGGCCHH-----------HHHHHHHHHHTSCCCC---------------CCC
T ss_pred -----HHHHHHHHHH--ccCCCEEEEcchhhcCHH-----------HHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 1223333322 234579999999987531 1122333332211 0 0235
Q ss_pred EEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCchhHHHHHHHHHHH
Q 004384 296 IVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYVGADLAALCTEAAL 374 (757)
Q Consensus 296 ~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~~~dl~~l~~~a~~ 374 (757)
.++++++.+..+++.+++ ||...+.++.|+.++..++++...+..... ++..+..++..+.|.. +.+..++..+..
T Consensus 152 ~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~-R~a~~ll~~~~~ 228 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP-RIAIRLTKRVRD 228 (334)
T ss_dssp EEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH-HHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Confidence 677899999999999998 898889999999999999998776543332 2334788888887754 566667766654
Q ss_pred HH
Q 004384 375 QC 376 (757)
Q Consensus 375 ~~ 376 (757)
.+
T Consensus 229 ~a 230 (334)
T 1in4_A 229 ML 230 (334)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=3.6e-11 Score=130.89 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=130.8
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh------CCeEEEEechhhh
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIM 229 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l------~~~~~~v~~~~l~ 229 (757)
..+++.|.+++++.+.+.+...+. -..+..++|+||+|||||+|++.+++.+ +..++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~---------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYR---------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGG---------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc---------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 347899999999988877653221 1346689999999999999999999988 7888999875432
Q ss_pred h------h----------ccch-hHHHHHHHHHHHHhc-CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC
Q 004384 230 S------K----------LAGE-SESNLRKAFEEAEKN-APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS 291 (757)
Q Consensus 230 ~------~----------~~g~-~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~ 291 (757)
. . ..+. .......+++..... .|.+|+|||++.+...... .....++..++.. .
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~~l~~~~~~~-~ 160 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILYKLSRINSEV-N 160 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHHHHHHHHHSC-C
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHHHHhhchhhc-C
Confidence 1 1 0111 122234444444433 3899999999998754211 1345556666544 3
Q ss_pred CCeEEEEEecCCC---CCCCHHhhccCCcc-eEEEeCCCCHHHHHHHHHHHhcC-C--CCCCchhhhHHhHhcC---CCc
Q 004384 292 RAHVIVIGATNRP---NSIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTKN-M--KLSDDVDLERIAKDTH---GYV 361 (757)
Q Consensus 292 ~~~v~vI~atn~~---~~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~-~--~l~~~~~l~~la~~t~---g~~ 361 (757)
..++.+|++++.+ ..+++.+.+ ||. ..+.+++++.++..+++...+.. . ....+..+..++..+. |.
T Consensus 161 ~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~- 237 (386)
T 2qby_A 161 KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGD- 237 (386)
T ss_dssp C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCC-
T ss_pred CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCC-
Confidence 4577888888876 456777776 554 58999999999999999876532 1 1122334566666665 54
Q ss_pred hhHHHHHHHHHHHHH
Q 004384 362 GADLAALCTEAALQC 376 (757)
Q Consensus 362 ~~dl~~l~~~a~~~~ 376 (757)
...+..++..+...+
T Consensus 238 ~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 238 ARRALDLLRVSGEIA 252 (386)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455666665443
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=6e-11 Score=129.52 Aligned_cols=198 Identities=20% Similarity=0.192 Sum_probs=130.8
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCc--eEEEEcCCCCCHHHHHHHHHHHh----CCeEEEEechhhhh
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPK--GILLYGPPGSGKTLIARAVANET----GAFFFCINGPEIMS 230 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~--~vLL~Gp~GtGKTtLar~la~~l----~~~~~~v~~~~l~~ 230 (757)
.+++.|.+++++.+.+.+...+.. ..+. .++|+||||||||++++.+++.+ +..++.++|.....
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRN---------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHS---------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC---------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 477999999999998887642211 2234 89999999999999999999998 56788888754321
Q ss_pred ------hc----------cchhH-HHHHHHHHHHH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccC-
Q 004384 231 ------KL----------AGESE-SNLRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKS- 291 (757)
Q Consensus 231 ------~~----------~g~~~-~~l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~- 291 (757)
.. .+... .....+..... ...|.+|+|||++.+. ......|+.++.....
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHHHHHHHHHHhCCCC
Confidence 00 01111 22222222222 2458899999999871 2345566666655432
Q ss_pred -CCeEEEEEecCCC---CCCCHHhhccCCcce-EEEeCCCCHHHHHHHHHHHhcC---CCCCCchhhhHHhHhcC-----
Q 004384 292 -RAHVIVIGATNRP---NSIDPALRRFGRFDR-EIDIGVPDEVGRLEVLRIHTKN---MKLSDDVDLERIAKDTH----- 358 (757)
Q Consensus 292 -~~~v~vI~atn~~---~~ld~~l~r~~rf~~-~i~i~~p~~~~r~~il~~~~~~---~~l~~~~~l~~la~~t~----- 358 (757)
..++.+|+++|.+ +.+++.+.+ ||.. .+.+++++.++..+++...+.. ....++..+..++..+.
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccC
Confidence 1477888888887 567887766 6654 7999999999999998876543 11223445778888883
Q ss_pred ----CCchhHHHHHHHHHHHHHH
Q 004384 359 ----GYVGADLAALCTEAALQCI 377 (757)
Q Consensus 359 ----g~~~~dl~~l~~~a~~~~~ 377 (757)
| ....+..++..+...+.
T Consensus 234 ~~~~G-~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 234 DTNRG-DARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CTTSC-CHHHHHHHHHHHHHHHH
T ss_pred CCCCC-cHHHHHHHHHHHHHHHH
Confidence 4 34556667776665443
No 146
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=2.5e-11 Score=130.78 Aligned_cols=176 Identities=22% Similarity=0.264 Sum_probs=120.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC------CeEEEEe
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG------AFFFCIN 224 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~------~~~~~v~ 224 (757)
+.++..|+++.|.++.++.+...+.. ....+++|+||||||||++++++++.++ ..++.++
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 96 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLKS-------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN 96 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTTC-------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHhc-------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc
Confidence 45667899999999998888877643 1123499999999999999999998864 3467777
Q ss_pred chhhhhhccchhHHHHHHHHHHHH----------------hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 225 GPEIMSKLAGESESNLRKAFEEAE----------------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 225 ~~~l~~~~~g~~~~~l~~vf~~a~----------------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
+.+... ...++..+.... ...+.+++|||++.+.+. ....|+..++.
T Consensus 97 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-----------~~~~Ll~~le~ 159 (353)
T 1sxj_D 97 ASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-----------AQSALRRTMET 159 (353)
T ss_dssp SSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-----------HHHHHHHHHHH
T ss_pred cccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-----------HHHHHHHHHHh
Confidence 655311 111222221111 123469999999988532 23556667765
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCCc
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGYV 361 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~~ 361 (757)
... ...+|.++|.+..+.+.+++ |+. .+.++.|+.++...++...+....+ .++..++.++..+.|..
T Consensus 160 ~~~--~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~ 228 (353)
T 1sxj_D 160 YSG--VTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDL 228 (353)
T ss_dssp TTT--TEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCH
T ss_pred cCC--CceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCH
Confidence 543 34555677888889999988 674 7899999999999998876643322 23345788888887653
No 147
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.30 E-value=4.1e-11 Score=129.01 Aligned_cols=159 Identities=22% Similarity=0.351 Sum_probs=96.7
Q ss_pred CCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE----Eechhh
Q 004384 153 DEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFC----INGPEI 228 (757)
Q Consensus 153 ~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~----v~~~~l 228 (757)
++.+|+++.|.++.++.+...... ....++||+||||||||++|++++..++..... ++|...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~-------------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD-------------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC-------------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCchhccChHHHHHHHHHHhhC-------------CCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 456799999999876654332221 123469999999999999999999988632110 011100
Q ss_pred hh---------------------hccchhHHHH------HHHHHHH---------HhcCCeEEEEcccccccCCCCCCch
Q 004384 229 MS---------------------KLAGESESNL------RKAFEEA---------EKNAPSIIFIDEIDSIAPKREKTHG 272 (757)
Q Consensus 229 ~~---------------------~~~g~~~~~l------~~vf~~a---------~~~~p~il~iDEid~l~~~~~~~~~ 272 (757)
.. ...+.....+ ...+... ....++++||||++.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~------ 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH------ 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH------
Confidence 00 0001111110 1112111 1123679999999987432
Q ss_pred HHHHHHHHHHHHHhhcc----cC-------CCeEEEEEecCCCC-CCCHHhhccCCcceEEEeCCC-CHHHHHHHHHH
Q 004384 273 EVERRIVSQLLTLMDGL----KS-------RAHVIVIGATNRPN-SIDPALRRFGRFDREIDIGVP-DEVGRLEVLRI 337 (757)
Q Consensus 273 ~~~~~~~~~Ll~~l~~~----~~-------~~~v~vI~atn~~~-~ld~~l~r~~rf~~~i~i~~p-~~~~r~~il~~ 337 (757)
....|+..++.- .. ...+.+|+++|..+ .+++++.+ ||+..+.++.| +.+.+.+|++.
T Consensus 160 -----~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 -----IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -----HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 234555555431 10 12688999999744 88999998 99888999999 56677677754
No 148
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.29 E-value=2.6e-11 Score=129.63 Aligned_cols=153 Identities=22% Similarity=0.252 Sum_probs=104.6
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech------hhh
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP------EIM 229 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~------~l~ 229 (757)
.++++.|.++.++.+...+.. +.+++|+||||||||+++++++..++..++.+++. ++.
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred hccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 356788998888777655432 35799999999999999999999999999888873 222
Q ss_pred hhccchhHHHHHHHHHHHHhcC---CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcc---------cCCCeEEE
Q 004384 230 SKLAGESESNLRKAFEEAEKNA---PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGL---------KSRAHVIV 297 (757)
Q Consensus 230 ~~~~g~~~~~l~~vf~~a~~~~---p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~---------~~~~~v~v 297 (757)
+........ ..+ ..... .+++||||++.+.+ .....|+..++.. .....+++
T Consensus 90 g~~~~~~~~---~~~--~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 90 GTMIYNQHK---GNF--EVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp EEEEEETTT---TEE--EEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred CceeecCCC---Cce--EeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 211100000 000 00011 26999999998642 2334555555532 12335678
Q ss_pred EEecCCCC-----CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC
Q 004384 298 IGATNRPN-----SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN 341 (757)
Q Consensus 298 I~atn~~~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 341 (757)
++++|+.+ .+++++.+ ||...+.++.|+.+++.+|++.....
T Consensus 154 iat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 88888543 38899988 99888999999999999999887654
No 149
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.29 E-value=3.3e-11 Score=127.83 Aligned_cols=179 Identities=20% Similarity=0.214 Sum_probs=120.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEec
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCING 225 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~ 225 (757)
+..+..|+++.|.++.++.+.+.+.. ....+++|+||||||||+++++++..+ +..++.+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER-------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTTT-------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHhC-------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 45667899999999998888766542 122349999999999999999999986 234677887
Q ss_pred hhhhhhccchhHHHHHHHHHH-HH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 226 PEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 226 ~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
++..+ .......+...... +. ...+.+++|||+|.+... ....|+..++... ..+.+|.+||.
T Consensus 77 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~i~~~~~ 141 (319)
T 2chq_A 77 SDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYS--KSCRFILSCNY 141 (319)
T ss_dssp TSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-----------HHHTTGGGTSSSS--SSEEEEEEESC
T ss_pred ccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-----------HHHHHHHHHHhcC--CCCeEEEEeCC
Confidence 65322 11111222222111 01 144789999999987431 2244555555432 46778888898
Q ss_pred CCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCC
Q 004384 304 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGY 360 (757)
Q Consensus 304 ~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~ 360 (757)
+..+.+.+.+ |+. .+.++.|+.++..+++...++...+. ++..+..++..+.|.
T Consensus 142 ~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~ 196 (319)
T 2chq_A 142 VSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGD 196 (319)
T ss_dssp GGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTC
T ss_pred hhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Confidence 8899999987 774 79999999999999998776544332 233467777666553
No 150
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.28 E-value=6.9e-11 Score=126.43 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=111.4
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCCc------------------------eEEEeCccccccccCchhHHHHHHHHH
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQAN------------------------FISVKGPELLTMWFGESEANVREIFDK 519 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~~------------------------~i~v~~~~l~~~~~g~~e~~i~~lf~~ 519 (757)
.+..+||+||||+|||++|+++|..+... ++.+.+.+- +. .-....++.+.+.
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEK 99 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHH
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHH
Confidence 34569999999999999999999986432 333332210 00 1123457788877
Q ss_pred HHhC----CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccce
Q 004384 520 ARQS----APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQ 595 (757)
Q Consensus 520 a~~~----~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~ 595 (757)
+... .+.|++|||+|.+. ....+.||..|+.. ..++++|.+||.++.+.+++.+ |+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc~- 160 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEEP--PAETWFFLATREPERLLATLRS--RCR- 160 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred HhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cce-
Confidence 6543 36899999999973 34568888888863 4467778888889999999998 885
Q ss_pred EEEecCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHHH
Q 004384 596 LIYIPLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRA 648 (757)
Q Consensus 596 ~i~~~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~a 648 (757)
.+.|++|+.++..++++... .+ .+..+..+++.+.| +.+.+.+++..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998775 22 22345667777765 555555555443
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=6.2e-11 Score=125.90 Aligned_cols=175 Identities=18% Similarity=0.205 Sum_probs=122.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEec
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCING 225 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~ 225 (757)
+..+..|+++.|.+..++.+.+.+.. ....+++|+||+|+|||++++.++..+ +..++.+++
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAKD-------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHHS-------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHHc-------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 34566789999999999998888753 112349999999999999999999986 334677776
Q ss_pred hhhhhhccchhHHHHHHHHHHHH-------hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEE
Q 004384 226 PEIMSKLAGESESNLRKAFEEAE-------KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVI 298 (757)
Q Consensus 226 ~~l~~~~~g~~~~~l~~vf~~a~-------~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI 298 (757)
.+.. ....++..++... ...+.+++|||+|.+... ....|+..++... ..+.+|
T Consensus 81 ~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~i 141 (323)
T 1sxj_B 81 SDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-----------AQQALRRTMELYS--NSTRFA 141 (323)
T ss_dssp TSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-----------HHHTTHHHHHHTT--TTEEEE
T ss_pred cccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-----------HHHHHHHHHhccC--CCceEE
Confidence 5421 1234455555443 234789999999987531 1244556665432 356677
Q ss_pred EecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--CCCCCchhhhHHhHhcCCCc
Q 004384 299 GATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKLSDDVDLERIAKDTHGYV 361 (757)
Q Consensus 299 ~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~l~~~~~l~~la~~t~g~~ 361 (757)
.+|+.+..+.+.+++ |+. .+.++.|+.++..+++...++. ..+. +..+..++..+.|..
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~G~~ 202 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYT-NDGLEAIIFTAEGDM 202 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBC-HHHHHHHHHHHTTCH
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCH
Confidence 788888889999987 663 7999999999999999876543 3332 334677787776653
No 152
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.27 E-value=6.4e-12 Score=145.23 Aligned_cols=229 Identities=19% Similarity=0.296 Sum_probs=137.5
Q ss_pred ccCCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCc---eEEEeCccc
Q 004384 425 VPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISVKGPEL 501 (757)
Q Consensus 425 ~~~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~---~i~v~~~~l 501 (757)
.+...|+++.|.+.+.+.+...+.. ...++|+|||||||||+|+++|+.+... .+.+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~ 99 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPE 99 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTT
T ss_pred ccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcc
Confidence 3456789999999998877665432 2469999999999999999999987432 222221111
Q ss_pred c--cc------------------------------------------------------ccCchhHHHHHHHHH------
Q 004384 502 L--TM------------------------------------------------------WFGESEANVREIFDK------ 519 (757)
Q Consensus 502 ~--~~------------------------------------------------------~~g~~e~~i~~lf~~------ 519 (757)
. .. ++.+.......+|..
T Consensus 100 ~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~ 179 (604)
T 3k1j_A 100 DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPF 179 (604)
T ss_dssp CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC
T ss_pred cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechh
Confidence 0 00 000001112222211
Q ss_pred -----------------HHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-----------------
Q 004384 520 -----------------ARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM----------------- 565 (757)
Q Consensus 520 -----------------a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~----------------- 565 (757)
.....+.++||||++.+. ..+.+.|+..|+.-
T Consensus 180 ~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~ 245 (604)
T 3k1j_A 180 QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVR 245 (604)
T ss_dssp ----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCB
T ss_pred hcCCccccccccccCceeeecCCCEEEEechhhCC--------------HHHHHHHHHHHHcCcEEecccccccccccCC
Confidence 112245699999999962 34555666665521
Q ss_pred --CCCCeEEEEeeCCCC--CCCCccccCCCccc---eEEEecCC---CHHHHHHHHHHhhccCC---CCCccC---HHHH
Q 004384 566 --SAKKTVFIIGATNRP--DIIDPALLRPGRLD---QLIYIPLP---DEDSRHQIFKACLRKSP---VSKDVD---LRAL 629 (757)
Q Consensus 566 --~~~~~v~vi~tTn~~--~~ld~allrpgRf~---~~i~~~~p---~~~~r~~Il~~~l~~~~---~~~~~d---~~~l 629 (757)
.-..++.||+|||+. +.++++|++ ||+ ..++|+.. +.+....+++...+... ....++ +..+
T Consensus 246 ~~~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~L 323 (604)
T 3k1j_A 246 TEPVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEI 323 (604)
T ss_dssp CSCEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHH
T ss_pred CCccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHH
Confidence 112367899999986 689999999 997 56666532 34556666654443211 111222 4444
Q ss_pred HHHc---CC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccccccccccccHHHHHHHHhhcCC
Q 004384 630 AKYT---QG------FSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMDEDAAEDEVSEIKAAHFEESMKFARR 700 (757)
Q Consensus 630 a~~~---~g------~sg~di~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~a~~~~~~ 700 (757)
.+.. .| .+.+++.++++.|...|..+. ...|+.+|+.+|++.. .
T Consensus 324 i~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~--------------------------~~~I~~edv~~A~~~~-~ 376 (604)
T 3k1j_A 324 VREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKG--------------------------KKYVEREDVIEAVKMA-K 376 (604)
T ss_dssp HHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTT--------------------------CSSBCHHHHHHHHHHT-C
T ss_pred HHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcC--------------------------cccccHHHHHHHHHhh-h
Confidence 4432 44 268999999999876664322 2479999999999542 3
Q ss_pred CCCHHHHHHHH
Q 004384 701 SVSDADIRKYQ 711 (757)
Q Consensus 701 s~~~~~~~~y~ 711 (757)
.+.++.++.|.
T Consensus 377 ~i~~~~~e~~l 387 (604)
T 3k1j_A 377 PLEKQLADWYI 387 (604)
T ss_dssp CHHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 44444444444
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.27 E-value=1.3e-10 Score=123.62 Aligned_cols=179 Identities=21% Similarity=0.240 Sum_probs=120.6
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC-----CeEEEEec
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG-----AFFFCING 225 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~-----~~~~~v~~ 225 (757)
+..+..|+++.|.++.++.+...+... ...+++|+||||||||+++++++..+. ..++.+++
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~ 84 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKTG-------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNA 84 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHHT-------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEET
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHcC-------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeec
Confidence 456678999999999999998877531 223599999999999999999999863 23677776
Q ss_pred hhhhhhccchhHHHHHHHHHH-HH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 226 PEIMSKLAGESESNLRKAFEE-AE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 226 ~~l~~~~~g~~~~~l~~vf~~-a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
.+..+. ......+...... +. ...+.+++|||+|.+... ....|+..++... ..+.+|.+++.
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~~~--~~~~~i~~~~~ 149 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-----------AQQALRRTMEMFS--SNVRFILSCNY 149 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTT--TTEEEEEEESC
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-----------HHHHHHHHHHhcC--CCCeEEEEeCC
Confidence 543221 1111112211110 01 145789999999987431 2345666666533 35667778888
Q ss_pred CCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CCchhhhHHhHhcCCC
Q 004384 304 PNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SDDVDLERIAKDTHGY 360 (757)
Q Consensus 304 ~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~~~~l~~la~~t~g~ 360 (757)
+..+.+.+.+ |+. .+.+++++.++..+++...++...+ .++..++.++..+.|.
T Consensus 150 ~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 204 (327)
T 1iqp_A 150 SSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGD 204 (327)
T ss_dssp GGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTC
T ss_pred ccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCC
Confidence 8889999887 664 7899999999999988877654332 1233467777777553
No 154
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=1.6e-11 Score=131.83 Aligned_cols=171 Identities=20% Similarity=0.280 Sum_probs=116.1
Q ss_pred CCccccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCC-----ceEEEeCccc
Q 004384 427 NVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISVKGPEL 501 (757)
Q Consensus 427 ~~~~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~-----~~i~v~~~~l 501 (757)
...|+++.|.+.+.+.|...+.. | ..+ +++|+||||||||++|+++|+.+.. .++.++.++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~ 87 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD 87 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC
T ss_pred CCcHHHhcCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc
Confidence 34688899999998888776542 1 112 3999999999999999999998632 3566666543
Q ss_pred cccccCchhHHHHHHHHHHH------hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEe
Q 004384 502 LTMWFGESEANVREIFDKAR------QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIG 575 (757)
Q Consensus 502 ~~~~~g~~e~~i~~lf~~a~------~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~ 575 (757)
. | ...++....... ...+.|+++||+|.+.. ...+.|+..|+... ....+|+
T Consensus 88 ~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------------~~~~~L~~~le~~~--~~~~~il 145 (340)
T 1sxj_C 88 R----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------------AAQNALRRVIERYT--KNTRFCV 145 (340)
T ss_dssp C----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------------HHHHHHHHHHHHTT--TTEEEEE
T ss_pred c----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhcCC--CCeEEEE
Confidence 1 1 223333333222 12368999999998732 33566777776543 3455667
Q ss_pred eCCCCCCCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCCCC-ccCHHHHHHHcCC
Q 004384 576 ATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPVSK-DVDLRALAKYTQG 635 (757)
Q Consensus 576 tTn~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~-~~d~~~la~~~~g 635 (757)
+||.++.+.+++.+ |+. .+.|++++.++..++++..+++..+.- +..+..+++.+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 78999999999998 886 789999999999999988885443321 1224455555443
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=9e-11 Score=126.57 Aligned_cols=177 Identities=16% Similarity=0.249 Sum_probs=115.8
Q ss_pred cCCCCCcccccChHHHHHHHHHHH-HccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA----------- 218 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i-~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~----------- 218 (757)
+.++..|+++.|.++.++.++..+ .. ....+++|+|||||||||+++++++.+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~~~-------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHhhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 456778999999999888877665 21 12234999999999999999999996421
Q ss_pred ------------------eEEEEechhhhhhccchhHHHHHHHHHHHH--------------hcCCeEEEEcccccccCC
Q 004384 219 ------------------FFFCINGPEIMSKLAGESESNLRKAFEEAE--------------KNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 219 ------------------~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~--------------~~~p~il~iDEid~l~~~ 266 (757)
.++.+++.+.. ......++..+..+. ...|.++++||++.+-.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~- 148 (354)
T 1sxj_E 74 QFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK- 148 (354)
T ss_dssp ------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH-
T ss_pred eecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-
Confidence 11222221110 001112344444332 23577999999988521
Q ss_pred CCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcC--CCC
Q 004384 267 REKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKN--MKL 344 (757)
Q Consensus 267 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~l 344 (757)
...+.|+..++.... +..+|.+||.+..+.+.+++ |+ ..+.++.|+.++..++++..++. ..+
T Consensus 149 ----------~~~~~L~~~le~~~~--~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 213 (354)
T 1sxj_E 149 ----------DAQAALRRTMEKYSK--NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQL 213 (354)
T ss_dssp ----------HHHHHHHHHHHHSTT--TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEE
T ss_pred ----------HHHHHHHHHHHhhcC--CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 223556666766533 46777788999999999987 77 77999999999999999876543 333
Q ss_pred CCchhhhHHhHhcCCC
Q 004384 345 SDDVDLERIAKDTHGY 360 (757)
Q Consensus 345 ~~~~~l~~la~~t~g~ 360 (757)
..+..+..++..+.|-
T Consensus 214 ~~~~~l~~i~~~~~G~ 229 (354)
T 1sxj_E 214 ETKDILKRIAQASNGN 229 (354)
T ss_dssp CCSHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHcCCC
Confidence 3134577788777653
No 156
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.22 E-value=7.5e-12 Score=116.82 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccC
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 541 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 541 (757)
...++|+||||||||++|++++..+ +.+|+ ++++.+... ......|..+.. +++||||||.+.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~~---g~l~ldei~~l~---- 89 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQG---GTLVLSHPEHLT---- 89 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHTT---SCEEEECGGGSC----
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcCC---cEEEEcChHHCC----
Confidence 3569999999999999999999886 67899 998876543 345566776644 599999999974
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 542 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
......|+..|... ..++.+|+|||++
T Consensus 90 ----------~~~q~~Ll~~l~~~--~~~~~~I~~t~~~ 116 (145)
T 3n70_A 90 ----------REQQYHLVQLQSQE--HRPFRLIGIGDTS 116 (145)
T ss_dssp ----------HHHHHHHHHHHHSS--SCSSCEEEEESSC
T ss_pred ----------HHHHHHHHHHHhhc--CCCEEEEEECCcC
Confidence 23455666666443 2345688888874
No 157
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.21 E-value=2.2e-10 Score=126.12 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=128.0
Q ss_pred ccccchhhHHHHhhhhc-cCCCCChhhhhhccc-CCCCceee--ecCCCCChhHHHHHHHHHh---------CCceEEEe
Q 004384 431 EDIGGLENVKRELQETV-QYPVEHPEKFEKFGM-SPSKGVLF--YGPPGCGKTLLAKAIANEC---------QANFISVK 497 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i-~~~~~~~~~~~~~~~-~~~~gilL--~GppGtGKT~la~~la~~~---------~~~~i~v~ 497 (757)
+.+.|-+...+.|.+.+ ..... +. ..+..++| +||+|+|||++++.++... +..++.++
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~--------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLS--------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHT--------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHhc--------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 56777777666666654 31110 10 12345888 9999999999999999876 44567777
Q ss_pred Ccccccc---------cc-------Cchh-HHHHHHHHHHH-hCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHH
Q 004384 498 GPELLTM---------WF-------GESE-ANVREIFDKAR-QSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLL 559 (757)
Q Consensus 498 ~~~l~~~---------~~-------g~~e-~~i~~lf~~a~-~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll 559 (757)
+....+. .+ +.+. .....+.+... ...|.+|+|||++.+...+. .....+..++
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--------~~~~~l~~l~ 165 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--------IAAEDLYTLL 165 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--------SCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--------cchHHHHHHH
Confidence 5332110 01 1111 11222222222 24578999999999864311 1245566666
Q ss_pred HhhcCCC-CC--CeEEEEeeCCCCC---CCC---ccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC---CCccCHH
Q 004384 560 TEMDGMS-AK--KTVFIIGATNRPD---IID---PALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV---SKDVDLR 627 (757)
Q Consensus 560 ~~ld~~~-~~--~~v~vi~tTn~~~---~ld---~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~---~~~~d~~ 627 (757)
..++... .. .++.+|++||.++ .++ +.+.+ ||...+.+++++.++..++++..+..... ..+..+.
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~ 243 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLE 243 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHH
Confidence 5555433 12 5788888888765 344 56666 66666999999999999999877653211 1223366
Q ss_pred HHHHHcC------CCCHHHHHHHHHHHHHHHHH
Q 004384 628 ALAKYTQ------GFSGADITEICQRACKYAIR 654 (757)
Q Consensus 628 ~la~~~~------g~sg~di~~~~~~a~~~a~~ 654 (757)
.+++.+. | +++.+..+|..|...|..
T Consensus 244 ~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 244 LISDVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 7777777 5 567888888888776654
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.21 E-value=2.5e-10 Score=123.85 Aligned_cols=187 Identities=19% Similarity=0.258 Sum_probs=126.2
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe-----------
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF----------- 219 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~----------- 219 (757)
+..+..|+++.|.++.++.+...+... ..+..++|+||+|||||++++++++.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 76 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 76 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc
Confidence 345667899999999999988877531 123468999999999999999999987531
Q ss_pred -------------EEEEechhhhhhccchhHHHHHHHHHHHH----hcCCeEEEEcccccccCCCCCCchHHHHHHHHHH
Q 004384 220 -------------FFCINGPEIMSKLAGESESNLRKAFEEAE----KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQL 282 (757)
Q Consensus 220 -------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~L 282 (757)
++.+++.. ......++.+++.+. ...+.+++|||+|.+.. ...+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L 139 (373)
T 1jr3_A 77 DNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (373)
T ss_dssp HHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHH
T ss_pred HHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHH
Confidence 22222211 001123455555543 23468999999998742 123556
Q ss_pred HHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCCC-CchhhhHHhHhcCCCc
Q 004384 283 LTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLS-DDVDLERIAKDTHGYV 361 (757)
Q Consensus 283 l~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~ 361 (757)
+..++.. ...+.+|.+|+.+..+.+.+.+ |+ ..+.++.|+.++..+++...++...+. ++..+..++..+.|.
T Consensus 140 l~~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~- 213 (373)
T 1jr3_A 140 LKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGS- 213 (373)
T ss_dssp HHHHHSC--CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSC-
T ss_pred HHHHhcC--CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCC-
Confidence 7777653 3367777788888888888887 66 679999999999999998766432222 233467788888664
Q ss_pred hhHHHHHHHHH
Q 004384 362 GADLAALCTEA 372 (757)
Q Consensus 362 ~~dl~~l~~~a 372 (757)
...+..++..+
T Consensus 214 ~r~~~~~l~~~ 224 (373)
T 1jr3_A 214 LRDALSLTDQA 224 (373)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 159
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.21 E-value=9.7e-11 Score=130.81 Aligned_cols=151 Identities=19% Similarity=0.227 Sum_probs=90.5
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEech-----hhhhh
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGP-----EIMSK 231 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~-----~l~~~ 231 (757)
.+.|.++.++.+...+. .+.+|||+||||||||+||++++..++. ++..+++. ++++.
T Consensus 23 ~ivGq~~~i~~l~~al~---------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAAL---------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TCSSCHHHHHHHHHHHH---------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhHHHHHHHHHHHHHHh---------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 36777777766554432 2458999999999999999999998843 45555542 23332
Q ss_pred ccchhHHHHHHHHHHHHhc---CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc--------CCCeEEEEEe
Q 004384 232 LAGESESNLRKAFEEAEKN---APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK--------SRAHVIVIGA 300 (757)
Q Consensus 232 ~~g~~~~~l~~vf~~a~~~---~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~--------~~~~v~vI~a 300 (757)
+.+..... ...|..+... .++|+|||||+.+. ..+...|+..|+... ..+..++|++
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~-----------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG-----------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC-----------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc-----------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 22211111 1122212121 46799999997653 234466777775311 1112245667
Q ss_pred cCCCCC---CCHHhhccCCcceEEEeCCCCH-HHHHHHHHHH
Q 004384 301 TNRPNS---IDPALRRFGRFDREIDIGVPDE-VGRLEVLRIH 338 (757)
Q Consensus 301 tn~~~~---ld~~l~r~~rf~~~i~i~~p~~-~~r~~il~~~ 338 (757)
||++.. ..+++.+ ||...+.++.|+. +++.+|+..+
T Consensus 156 TN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~ 195 (500)
T 3nbx_X 156 SNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 195 (500)
T ss_dssp ESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCC
T ss_pred cccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcc
Confidence 775432 3457776 8988999999997 6778888654
No 160
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.21 E-value=2.4e-10 Score=148.88 Aligned_cols=323 Identities=15% Similarity=0.235 Sum_probs=164.6
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh-CCeEEEEechhhhhhccchhHHHHHHHHHHHH----------------hcCCe
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET-GAFFFCINGPEIMSKLAGESESNLRKAFEEAE----------------KNAPS 253 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l-~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~----------------~~~p~ 253 (757)
.+.+|||+||||||||+++......+ +..++.++++...+ ...+...++... .....
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~ 1376 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWL 1376 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceE
Confidence 46789999999999998876544443 55567777754322 223333333210 12236
Q ss_pred EEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc-------ccCCCeEEEEEecCCC-----CCCCHHhhccCCcceEE
Q 004384 254 IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG-------LKSRAHVIVIGATNRP-----NSIDPALRRFGRFDREI 321 (757)
Q Consensus 254 il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~-------~~~~~~v~vI~atn~~-----~~ld~~l~r~~rf~~~i 321 (757)
|+|+||++....+... ....-.++.++++.-.- +..-.++.+|+|+|++ ..+++.+.| || ..+
T Consensus 1377 VlFiDDiNmp~~D~yG--tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F-~vi 1451 (3245)
T 3vkg_A 1377 VVFCDEINLPSTDKYG--TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HA-PIL 1451 (3245)
T ss_dssp EEEETTTTCCCCCTTS--CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TC-CEE
T ss_pred EEEecccCCCCccccc--cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hc-eEE
Confidence 9999999865443222 22222334444432111 1112467899999987 468999987 77 458
Q ss_pred EeCCCCHHHHHHHHHHHhcCCC-CCCchh--hhHH------------------hHhcCCCchhHHHHHHHHHHHH-----
Q 004384 322 DIGVPDEVGRLEVLRIHTKNMK-LSDDVD--LERI------------------AKDTHGYVGADLAALCTEAALQ----- 375 (757)
Q Consensus 322 ~i~~p~~~~r~~il~~~~~~~~-l~~~~~--l~~l------------------a~~t~g~~~~dl~~l~~~a~~~----- 375 (757)
.++.|+.+....|+..+...+. ...+.. ...+ ++...-|+.+|+.+.++-....
T Consensus 1452 ~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~~~~~~ 1531 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEAIQTMD 1531 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHHHHTSS
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHhcCccc
Confidence 9999999999988765432211 111100 0011 0112346778887776543321
Q ss_pred --------------HHHhhcccc-cccchhhhHHHhhhcccchhhhhhhhcc--CCCCCceeeeeeccCCccccccchhh
Q 004384 376 --------------CIREKMDVI-DLEDETIDAEILNSMAVSNEHFQTALGT--SNPSALRETVVEVPNVSWEDIGGLEN 438 (757)
Q Consensus 376 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~al~~--~~p~~~~~~~~~~~~~~~~~i~g~~~ 438 (757)
+.|-..+.. +..+...-..... .+...+|...-.. ..|--..... .-.+..+ ..++
T Consensus 1532 ~~~~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f~~~l~--~~~~~~F~~~~~~~~~~pllf~~f~----~~~Y~~v-~~~~ 1604 (3245)
T 3vkg_A 1532 GCTLEGLVRLWAHEALRLFQDRLVETEEKEWTDKKID--EVALKHFPSVNLDALKRPILYSNWL----TKDYQPV-NRSD 1604 (3245)
T ss_dssp CCCTTHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHH--HHHHHHCTTSCGGGGCSSCCCCSSC----C----CC-CHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHhcCcchhhhcccCcchhhhc----cccCccC-CHHH
Confidence 111111100 0000000000000 0001111100000 0010000000 0012222 2234
Q ss_pred HHHHhhhhccCC---------------CCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 439 VKRELQETVQYP---------------VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 439 ~k~~l~~~i~~~---------------~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
+++.+.+.+... +.|.-.+.+.-..|.+++||+|..|+||++|+|..|..++..++.+..+.
T Consensus 1605 l~~~l~~~L~~yn~~~~~m~LVlF~daleHv~RI~RIL~qp~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi~i~k--- 1681 (3245)
T 3vkg_A 1605 LREYVKARLKVFYEEELDVPLVLFNEVLDHILRIDRVFRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTIKVNN--- 1681 (3245)
T ss_dssp HHHHHHHHHHTTC------CCCCCHHHHHHHHHHHHHHTSTTCCEEEEESTTSSHHHHHHHHHHHTTCEEECCC------
T ss_pred HHHHHHHHHHHHHhcccCceEEeHHHHHHHHHHHHHHHccCCCCeEEecCCCCcHHHHHHHHHHHhCCeeEEEeeeC---
Confidence 444433332110 11222233333456677999999999999999999999999998876543
Q ss_pred cc-cCchhHHHHHHHHHHH-hCCCeEEEEeccc
Q 004384 504 MW-FGESEANVREIFDKAR-QSAPCVLFFDELD 534 (757)
Q Consensus 504 ~~-~g~~e~~i~~lf~~a~-~~~p~il~iDEid 534 (757)
.| ..+-...++.++.+|. ...|.+++|+|-+
T Consensus 1682 ~Y~~~~f~eDLk~l~~~aG~~~~~~vFL~tD~q 1714 (3245)
T 3vkg_A 1682 NYKSSDFDDDLRMLLKRAGCKEEKICFIFDESN 1714 (3245)
T ss_dssp -CCHHHHHHHHHHHHHHHHTSCCCEEEEEEGGG
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 23 2344567899999985 4568888898764
No 161
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=4.9e-12 Score=117.79 Aligned_cols=132 Identities=16% Similarity=0.191 Sum_probs=84.7
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhH
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA 511 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~ 511 (757)
+++|.+...+.+.+.+... .....+++|+||||||||++|++++..+. +|+.++++++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 3556666666666554421 12235699999999999999999999888 99999998765433
Q ss_pred HHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC-CCC----Ccc
Q 004384 512 NVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP-DII----DPA 586 (757)
Q Consensus 512 ~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~-~~l----d~a 586 (757)
...+|+.+. .+++||||+|.+.. .....|+..|+... ..++.+|+|||++ +.+ ++.
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~--------------~~q~~Ll~~l~~~~-~~~~~iI~~tn~~~~~~~~~~~~~ 127 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSR--------------NIQTGITFIIGKAE-RCRVRVIASCSYAAGSDGISCEEK 127 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCH--------------HHHHHHHHHHHHHT-TTTCEEEEEEEECTTTC--CHHHH
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCH--------------HHHHHHHHHHHhCC-CCCEEEEEecCCCHHHHHhCccHH
Confidence 456677665 35999999999743 23444555555322 3456788888864 332 223
Q ss_pred ccCCCccc-eEEEecCC
Q 004384 587 LLRPGRLD-QLIYIPLP 602 (757)
Q Consensus 587 llrpgRf~-~~i~~~~p 602 (757)
+.. ||. ..|++|+.
T Consensus 128 L~~--rl~~~~i~lPpL 142 (143)
T 3co5_A 128 LAG--LFSESVVRIPPL 142 (143)
T ss_dssp HHH--HSSSEEEEECCC
T ss_pred HHH--HhcCcEEeCCCC
Confidence 333 433 45666653
No 162
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.17 E-value=1.1e-10 Score=120.44 Aligned_cols=148 Identities=21% Similarity=0.268 Sum_probs=87.7
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhc
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKL 232 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~---~~~~~v~~~~l~~~~ 232 (757)
+|+++.|.+..+..+.+.+.... ..+.+++|+||||||||++|++++.... .+++.++|..+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~-----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLA-----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHT-----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 57888999999888877665421 2346799999999999999999999875 579999987653211
Q ss_pred -----cchhHHH-------HHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc---------C
Q 004384 233 -----AGESESN-------LRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------S 291 (757)
Q Consensus 233 -----~g~~~~~-------l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---------~ 291 (757)
.|..... ....+.. ...++|||||++.+... ....|+..++... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCCCcccc
Confidence 1110000 0011222 23579999999987531 2345566665321 1
Q ss_pred CCeEEEEEecCCC-------CCCCHHhhccCCcceEEEeCCCCHHHH
Q 004384 292 RAHVIVIGATNRP-------NSIDPALRRFGRFDREIDIGVPDEVGR 331 (757)
Q Consensus 292 ~~~v~vI~atn~~-------~~ld~~l~r~~rf~~~i~i~~p~~~~r 331 (757)
...+.+|++||.+ ..+.+.+.. ||.. +.+..|...+|
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R 182 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRER 182 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGC
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhh
Confidence 2356788888874 246677766 6743 33444444443
No 163
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=1.1e-10 Score=122.56 Aligned_cols=142 Identities=11% Similarity=0.160 Sum_probs=103.4
Q ss_pred chhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh------CCceEEEeCccccccccCc
Q 004384 435 GLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISVKGPELLTMWFGE 508 (757)
Q Consensus 435 g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~------~~~~i~v~~~~l~~~~~g~ 508 (757)
|++++.+.|...+.. + . ...+|||||||+|||++|+++|..+ ...++.+++++ . ..
T Consensus 1 g~~~~~~~L~~~i~~-----------~-~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------S-E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHT-----------C-S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHC-----------C-C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 455566666655442 1 1 3469999999999999999999874 34677776542 0 12
Q ss_pred hhHHHHHHHHHHHhCC----CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 509 SEANVREIFDKARQSA----PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 509 ~e~~i~~lf~~a~~~~----p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
.-..++.+.+.+...+ ..|+|+||+|.+. ....|.||..|+... .++++|.+||.|+.|.
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEep~--~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEEPP--EYAVIVLNTRRWHYLL 126 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHSCC--TTEEEEEEESCGGGSC
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhCCC--CCeEEEEEECChHhCh
Confidence 2446788888886543 4799999999973 345688999998643 4566666677788999
Q ss_pred ccccCCCccceEEEecCCCHHHHHHHHHHhh
Q 004384 585 PALLRPGRLDQLIYIPLPDEDSRHQIFKACL 615 (757)
Q Consensus 585 ~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 615 (757)
|++.+ | ++.|++|+.++..+.++..+
T Consensus 127 ~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 127 PTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 99998 8 89999999999999888776
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=2.2e-09 Score=115.02 Aligned_cols=173 Identities=19% Similarity=0.275 Sum_probs=115.1
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC-----eEEEEec
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA-----FFFCING 225 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~-----~~~~v~~ 225 (757)
+.++-.|+++.|.++.++.+...+.. ....+++|+|||||||||+++++|+.+.. .+..++.
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~~-------------g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~ 84 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVDE-------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNA 84 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHT-------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECT
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHhc-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcC
Confidence 45667889999999998888877653 11124999999999999999999998632 3556665
Q ss_pred hhhhhhccchhHHHHHHHHHHHHh------cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEE
Q 004384 226 PEIMSKLAGESESNLRKAFEEAEK------NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIG 299 (757)
Q Consensus 226 ~~l~~~~~g~~~~~l~~vf~~a~~------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~ 299 (757)
++.. + ...++..+..... ..+.++++||+|.+... ..+.|+..++.... ...+|.
T Consensus 85 ~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~--~~~~il 145 (340)
T 1sxj_C 85 SDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERYTK--NTRFCV 145 (340)
T ss_dssp TSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHTTT--TEEEEE
T ss_pred cccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcCCC--CeEEEE
Confidence 4321 1 2233333333221 23689999999987421 23456667765443 455666
Q ss_pred ecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhc--CCCCCCchhhhHHhHhcCC
Q 004384 300 ATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTK--NMKLSDDVDLERIAKDTHG 359 (757)
Q Consensus 300 atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~l~~~~~l~~la~~t~g 359 (757)
+||.+..+.+.+++ |+. .+.+..++.++..+++...++ .+.+.+ ..+..++..+.|
T Consensus 146 ~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G 203 (340)
T 1sxj_C 146 LANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG 203 (340)
T ss_dssp EESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT
T ss_pred EecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC
Confidence 78888889999988 764 688888888888888776653 333332 235555555544
No 165
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.06 E-value=6.3e-10 Score=117.12 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=107.0
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhc---
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKL--- 232 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~--- 232 (757)
++.|.+..++++.+.+.... ..+.+|||+||||||||++|++++... +.+++.++|..+....
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 57788888888877765421 335679999999999999999999975 4678999987653211
Q ss_pred --cch----hHH---HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc---------CCCe
Q 004384 233 --AGE----SES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK---------SRAH 294 (757)
Q Consensus 233 --~g~----~~~---~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~---------~~~~ 294 (757)
.|. ... .....|..+. .++|||||++.+... ....|+..++... ....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCcccccCC
Confidence 110 000 0112344443 469999999988531 2345666665432 1235
Q ss_pred EEEEEecCCC-------CCCCHHhhccCCcc-eEEEeCCCC--HHHHHHHHHHHhc----CCC----CCCchhhhHHhHh
Q 004384 295 VIVIGATNRP-------NSIDPALRRFGRFD-REIDIGVPD--EVGRLEVLRIHTK----NMK----LSDDVDLERIAKD 356 (757)
Q Consensus 295 v~vI~atn~~-------~~ld~~l~r~~rf~-~~i~i~~p~--~~~r~~il~~~~~----~~~----l~~~~~l~~la~~ 356 (757)
+.+|++||.. ..+++.+.. ||. ..+.+|+.. .++...++..+++ ... ...+..+..+...
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 7888888875 234555554 553 334444443 2222333333221 111 1122234555554
Q ss_pred cCCCchhHHHHHHHHHHH
Q 004384 357 THGYVGADLAALCTEAAL 374 (757)
Q Consensus 357 t~g~~~~dl~~l~~~a~~ 374 (757)
.-..+.+++.+++..+..
T Consensus 216 ~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVV 233 (304)
T ss_dssp CCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 422234566666666554
No 166
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.05 E-value=1.8e-10 Score=107.04 Aligned_cols=112 Identities=18% Similarity=0.254 Sum_probs=76.2
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHH
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESES 238 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~ 238 (757)
++.|.++.++++++.+.... ..+.+|+|+||||||||++|++++...+ +++.++|.++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------ 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------ 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC------
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh------
Confidence 47788888888887775421 2356799999999999999999998887 88999988765433
Q ss_pred HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 239 NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 239 ~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
....++.+. .+++||||++.+... ....|+..++... ...+.+|++||.+
T Consensus 67 -~~~~~~~a~---~~~l~lDei~~l~~~-----------~q~~Ll~~l~~~~-~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 -PMELLQKAE---GGVLYVGDIAQYSRN-----------IQTGITFIIGKAE-RCRVRVIASCSYA 116 (143)
T ss_dssp -HHHHHHHTT---TSEEEEEECTTCCHH-----------HHHHHHHHHHHHT-TTTCEEEEEEEEC
T ss_pred -hhhHHHhCC---CCeEEEeChHHCCHH-----------HHHHHHHHHHhCC-CCCEEEEEecCCC
Confidence 334455443 469999999988432 2244555555432 3356677777743
No 167
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.05 E-value=3.4e-10 Score=105.45 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=75.9
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccch
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGE 235 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~ 235 (757)
++.|.+..++++.+.+.... ..+.+|+|+||||||||++|++++... +.+++ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CceeCCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 46778888888877665321 335679999999999999999999876 66788 998776543
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 236 SESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 236 ~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
......+..+ ..++|||||+|.+.+. ....|+..+.... ..+.+|++||.+
T Consensus 66 --~~~~~~~~~a---~~g~l~ldei~~l~~~-----------~q~~Ll~~l~~~~--~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALA---QGGTLVLSHPEHLTRE-----------QQYHLVQLQSQEH--RPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHH---TTSCEEEECGGGSCHH-----------HHHHHHHHHHSSS--CSSCEEEEESSC
T ss_pred --hhhhcHHHHc---CCcEEEEcChHHCCHH-----------HHHHHHHHHhhcC--CCEEEEEECCcC
Confidence 1233345544 3469999999988432 2345666664433 345677788764
No 168
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.95 E-value=3.2e-08 Score=105.65 Aligned_cols=147 Identities=15% Similarity=0.193 Sum_probs=100.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCe------------------------EEEEechhhhhhccchhHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAF------------------------FFCINGPEIMSKLAGESESNLRKAFEEA 247 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~l~~vf~~a 247 (757)
+..+||+||+|+|||++++++|..+... ++.+++.+- ........++.+++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHHHH
Confidence 4469999999999999999999987532 233332100 0011234566666665
Q ss_pred Hh----cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEe
Q 004384 248 EK----NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDI 323 (757)
Q Consensus 248 ~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i 323 (757)
.. ....|++|||+|.+... ..+.|+..++.. ...+++|.+|+.++.+.+.+++ |+ ..+.+
T Consensus 101 ~~~~~~~~~kvviIdead~l~~~-----------a~naLLk~lEep--~~~~~~Il~t~~~~~l~~ti~S--Rc-~~~~~ 164 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTDA-----------AANALLKTLEEP--PAETWFFLATREPERLLATLRS--RC-RLHYL 164 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHHTSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEEC
T ss_pred hhccccCCcEEEEECchhhcCHH-----------HHHHHHHHhcCC--CCCeEEEEEeCChHhCcHHHhh--cc-eeeeC
Confidence 42 34689999999988431 235677777753 2367777788888999999998 66 56999
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCc
Q 004384 324 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 361 (757)
Q Consensus 324 ~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 361 (757)
+.|+.++..+++.... .+ ++..+..++..+.|..
T Consensus 165 ~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~~ 198 (334)
T 1a5t_A 165 APPPEQYAVTWLSREV---TM-SQDALLAALRLSAGSP 198 (334)
T ss_dssp CCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTCH
T ss_pred CCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCCH
Confidence 9999999988887654 22 3334566777666543
No 169
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.93 E-value=2.4e-09 Score=103.54 Aligned_cols=100 Identities=19% Similarity=0.288 Sum_probs=60.8
Q ss_pred CCCCCcccccCh----HHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh----CCeEEEE
Q 004384 152 LDEVGYDDVGGV----RKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCI 223 (757)
Q Consensus 152 ~~~~~~~~i~G~----~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l----~~~~~~v 223 (757)
+.+.+|+++.+- .+.++.+++++ +++.+.++.+++|+||||||||||++++++.+ +..++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFV----------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHH----------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHH----------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 445567776552 33333333333 34455668899999999999999999999887 5556667
Q ss_pred echhhhhhccchhHHH-HHHHHHHHHhcCCeEEEEcccccc
Q 004384 224 NGPEIMSKLAGESESN-LRKAFEEAEKNAPSIIFIDEIDSI 263 (757)
Q Consensus 224 ~~~~l~~~~~g~~~~~-l~~vf~~a~~~~p~il~iDEid~l 263 (757)
+..++........... ....++. ...|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 7766654322111100 0112222 235789999998743
No 170
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.87 E-value=1.6e-09 Score=124.34 Aligned_cols=163 Identities=20% Similarity=0.222 Sum_probs=95.2
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE----echhhhhhcc
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI----NGPEIMSKLA 233 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v----~~~~l~~~~~ 233 (757)
..|.|++..++.+.-.+.. ..+....+..+....+|||+||||||||+||++++..++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3588888876655322211 100001111223344899999999999999999999887655432 1222211111
Q ss_pred -----chhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----------CCCeEEE
Q 004384 234 -----GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----------SRAHVIV 297 (757)
Q Consensus 234 -----g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----------~~~~v~v 297 (757)
+..... ...+..| ..+++||||++.+.+. ....|+..|+.-. ...++.|
T Consensus 373 ~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred ecccccccccc-CCeeEec---CCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 110000 0112222 3469999999987532 2355666665321 1235789
Q ss_pred EEecCCCC-------------CCCHHhhccCCcc-eEEEeCCCCHHHHHHHHHHHhc
Q 004384 298 IGATNRPN-------------SIDPALRRFGRFD-REIDIGVPDEVGRLEVLRIHTK 340 (757)
Q Consensus 298 I~atn~~~-------------~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~ 340 (757)
|+|+|+.. .+++++.+ ||+ ..+..+.|+.+ ...|.+....
T Consensus 438 IaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 438 IAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 99999876 78888888 897 45566777777 7677665543
No 171
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.87 E-value=9e-10 Score=114.32 Aligned_cols=122 Identities=23% Similarity=0.306 Sum_probs=80.8
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhc
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~ 538 (757)
|+.+.+.++|+||||||||+||.++|...+. .|+....++.++.|....+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 5555556899999999999999999987543 466664345455554555666677777776665 999999999865
Q ss_pred ccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccc
Q 004384 539 QRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPAL 587 (757)
Q Consensus 539 ~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~al 587 (757)
.+.... ..+...+.+.+++..|.++....++.+|++|| |...|+++
T Consensus 197 ~~~~~s--~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNT--TSGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccc--ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 432210 11122456677777777665555678888888 66667665
No 172
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.85 E-value=2.6e-08 Score=104.53 Aligned_cols=142 Identities=11% Similarity=0.170 Sum_probs=98.9
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh------CCeEEEEechhhhhhccch
Q 004384 162 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET------GAFFFCINGPEIMSKLAGE 235 (757)
Q Consensus 162 G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l------~~~~~~v~~~~l~~~~~g~ 235 (757)
|.++.++.++..+... ....+||+||||+|||++++++|..+ ...++.+++.. . ..
T Consensus 1 g~~~~~~~L~~~i~~~-------------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~ 62 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NI 62 (305)
T ss_dssp ---CHHHHHHHHHHTC-------------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CB
T ss_pred ChHHHHHHHHHHHHCC-------------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CC
Confidence 4556667777666541 13579999999999999999999863 33566666432 0 12
Q ss_pred hHHHHHHHHHHHHhc----CCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHh
Q 004384 236 SESNLRKAFEEAEKN----APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 311 (757)
Q Consensus 236 ~~~~l~~vf~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l 311 (757)
....++.+++.+... ...|+||||+|.+... ..+.|+..++... ..+++|.+|+.+..+.+.+
T Consensus 63 ~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-----------a~naLLk~LEep~--~~t~fIl~t~~~~kl~~tI 129 (305)
T 2gno_A 63 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-----------AANAFLKALEEPP--EYAVIVLNTRRWHYLLPTI 129 (305)
T ss_dssp CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-----------HHHHTHHHHHSCC--TTEEEEEEESCGGGSCHHH
T ss_pred CHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-----------HHHHHHHHHhCCC--CCeEEEEEECChHhChHHH
Confidence 234567777776532 2369999999988422 2456777887643 3566667778888999999
Q ss_pred hccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 312 RRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 312 ~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
++ | .+.++.|+.++..+.+....
T Consensus 130 ~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 130 KS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred Hc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 98 6 68888999988888887655
No 173
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.83 E-value=7.6e-08 Score=105.62 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=121.4
Q ss_pred cccccChHHHHHHHHHHH-HccccChhhHhhhCCCCCceEEE--EcCCCCCHHHHHHHHHHHh---------CCeEEEEe
Q 004384 157 YDDVGGVRKQMAQIRELV-ELPLRHPQLFKSIGVKPPKGILL--YGPPGSGKTLIARAVANET---------GAFFFCIN 224 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i-~~~l~~~~~~~~l~i~~~~~vLL--~Gp~GtGKTtLar~la~~l---------~~~~~~v~ 224 (757)
.+++.|-+++++++.+.+ ......+ -..+..++| +||+|+|||+|++.++..+ +..++.++
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~-------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA-------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS-------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC-------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 367999999999998887 4321110 023567999 9999999999999999876 44567787
Q ss_pred chhh------hhhc----------cchhHHH-HHHHHHHHH-hcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHh
Q 004384 225 GPEI------MSKL----------AGESESN-LRKAFEEAE-KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 286 (757)
Q Consensus 225 ~~~l------~~~~----------~g~~~~~-l~~vf~~a~-~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l 286 (757)
+... .... .+..... ...+..... ...|.+|+|||++.+....... ......++..+
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~-----~~~l~~l~~~~ 168 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIA-----AEDLYTLLRVH 168 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSC-----HHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcc-----hHHHHHHHHHH
Confidence 6321 1110 0111111 222222222 2457899999999986431111 12333444444
Q ss_pred hcccC-C--CeEEEEEecCCCC---CCC---HHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCC---CCCCchhhhHHh
Q 004384 287 DGLKS-R--AHVIVIGATNRPN---SID---PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNM---KLSDDVDLERIA 354 (757)
Q Consensus 287 ~~~~~-~--~~v~vI~atn~~~---~ld---~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---~l~~~~~l~~la 354 (757)
..... . .++.+|++++.++ .++ +.+.+ ++...+.+++++.++..+++...+... ...++..+..++
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 43321 2 5788888887654 223 44444 555559999999999999987654311 112334567777
Q ss_pred HhcC------CCchhHHHHHHHHHHHHH
Q 004384 355 KDTH------GYVGADLAALCTEAALQC 376 (757)
Q Consensus 355 ~~t~------g~~~~dl~~l~~~a~~~~ 376 (757)
..+. |. +..+..++..+...+
T Consensus 247 ~~~~~~~~~~G~-p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 247 DVYGEDKGGDGS-ARRAIVALKMACEMA 273 (412)
T ss_dssp HHHCGGGTSCCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCc-HHHHHHHHHHHHHHH
Confidence 7777 54 445556666555433
No 174
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.77 E-value=9.8e-09 Score=117.36 Aligned_cols=28 Identities=25% Similarity=0.390 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+++.+.|+||+|+|||||+++|++.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4678889999999999999999999865
No 175
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.77 E-value=2.4e-07 Score=105.10 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=67.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHH--HHHHh--CCeEEEEechhhhh------hccc-----------------------
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARA--VANET--GAFFFCINGPEIMS------KLAG----------------------- 234 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~--la~~l--~~~~~~v~~~~l~~------~~~g----------------------- 234 (757)
++.+++.++|+||||||||||++. +++.. +...+.+++.+... ...|
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~ 114 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 114 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccch
Confidence 567889999999999999999999 56654 33345555532100 0000
Q ss_pred -------hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCC
Q 004384 235 -------ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSI 307 (757)
Q Consensus 235 -------~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~l 307 (757)
.....+...........|.+++|||+-.+.+.. ..+......+..++..+.. .++.+|.++++.+.+
T Consensus 115 ~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 115 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQ-IGATTVMTTERIEEY 188 (525)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSS
T ss_pred hhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCc
Confidence 012223334444555678899999987765431 1122333445555554443 245677788887665
No 176
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.76 E-value=6.8e-09 Score=96.97 Aligned_cols=97 Identities=15% Similarity=0.336 Sum_probs=62.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKR 267 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~ 267 (757)
+++.++|+||+|+|||||++++++.+ +...+.+++.++... +....|.+|+|||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 57789999999999999999999987 556777887665433 11235789999999875322
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeE-EEEEecCCCCCCC--HHhhc
Q 004384 268 EKTHGEVERRIVSQLLTLMDGLKSRAHV-IVIGATNRPNSID--PALRR 313 (757)
Q Consensus 268 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~v-~vI~atn~~~~ld--~~l~r 313 (757)
. ...|+.+++........ +++.+...|..+. +.+.+
T Consensus 99 -----~-----~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~S 137 (149)
T 2kjq_A 99 -----E-----QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRT 137 (149)
T ss_dssp -----H-----HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHH
T ss_pred -----H-----HHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHH
Confidence 1 23444555444333332 4554433555443 66665
No 177
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.75 E-value=5e-09 Score=101.24 Aligned_cols=105 Identities=21% Similarity=0.179 Sum_probs=61.8
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh----CCceEEEeCccccccccCchhH-HHHHHHHHHHhCCCeEEEEecccc
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKGPELLTMWFGESEA-NVREIFDKARQSAPCVLFFDELDS 535 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~----~~~~i~v~~~~l~~~~~g~~e~-~i~~lf~~a~~~~p~il~iDEid~ 535 (757)
....+.+++|+||||||||||++++++.+ +...+.++..++...+...... ....+.+.. ..|.++++||++.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~ 111 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGS 111 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSS
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCC
Confidence 33446779999999999999999999876 4566667766665432211000 001222222 2467999999985
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 536 IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 536 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
... +......+..++..... .+..+|.|||.+
T Consensus 112 ~~~---------~~~~~~~l~~ll~~~~~----~~~~ii~tsn~~ 143 (180)
T 3ec2_A 112 ERL---------SDWQRELISYIITYRYN----NLKSTIITTNYS 143 (180)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHH----TTCEEEEECCCC
T ss_pred CcC---------CHHHHHHHHHHHHHHHH----cCCCEEEEcCCC
Confidence 421 12344455555544321 123566677765
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.74 E-value=6.1e-09 Score=97.27 Aligned_cols=105 Identities=13% Similarity=0.250 Sum_probs=65.3
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhccc
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQR 540 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r 540 (757)
+...++|+||+|+|||+|++++++.. +...+.+++.++... +....|.++++||++.+...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~- 98 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNE- 98 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChH-
Confidence 34569999999999999999999987 556788888776543 11234679999999885321
Q ss_pred CCCCCCCCcchHHHHHHHHHhhcCCCCCCe-EEEEeeCCCCCCCC--ccccCCCccceEEEe
Q 004384 541 GSSVGDAGGAADRVLNQLLTEMDGMSAKKT-VFIIGATNRPDIID--PALLRPGRLDQLIYI 599 (757)
Q Consensus 541 ~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~-v~vi~tTn~~~~ld--~allrpgRf~~~i~~ 599 (757)
..+.+-.+++.+. ..+. ++||.+...|+.+. +++.+ ||..-+.+
T Consensus 99 ----------~~~~l~~li~~~~---~~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~ 145 (149)
T 2kjq_A 99 ----------EQALLFSIFNRFR---NSGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVY 145 (149)
T ss_dssp ----------HHHHHHHHHHHHH---HHTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEEC
T ss_pred ----------HHHHHHHHHHHHH---HcCCcEEEEECCCCHHHccccHHHHH--HHhcCeeE
Confidence 1333333433332 2222 34554433565443 56655 76544433
No 179
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.73 E-value=1e-07 Score=124.63 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=87.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTH 271 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~ 271 (757)
..+..+.||+|||||.+++.+|..+|..++.++|++-+.. ..+..+|.-+... .+..++||++.+-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl~~------ 670 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRLEE------ 670 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSSCH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcCCH------
Confidence 3467899999999999999999999999999999764332 3456667666544 35889999987632
Q ss_pred hHHHHHHHHHHHHHhh-------------c--ccCCCeEEEEEecCC----CCCCCHHhhccCCcceEEEeCCCCHHHHH
Q 004384 272 GEVERRIVSQLLTLMD-------------G--LKSRAHVIVIGATNR----PNSIDPALRRFGRFDREIDIGVPDEVGRL 332 (757)
Q Consensus 272 ~~~~~~~~~~Ll~~l~-------------~--~~~~~~v~vI~atn~----~~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 332 (757)
++-.-+..++..... + +.-+....++.|.|+ ...++..++. || +.+.+..||.+.-.
T Consensus 671 -~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~~i~ 746 (3245)
T 3vkg_A 671 -RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDREMIA 746 (3245)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHHHHH
Confidence 122222222221111 1 122234567778874 3578999987 66 66999999998887
Q ss_pred HHHH
Q 004384 333 EVLR 336 (757)
Q Consensus 333 ~il~ 336 (757)
+|+.
T Consensus 747 ei~L 750 (3245)
T 3vkg_A 747 QVML 750 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
No 180
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.72 E-value=2.9e-08 Score=114.57 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=43.5
Q ss_pred cCCCCCcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 151 RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 151 ~~~~~~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.+++..++++.|.+..++.+...+.. +.+++|+||||||||||++++++.++
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~~---------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAANQ---------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHHT---------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccccceEECchhhHhhccccccC---------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 45667789999999988877766542 45899999999999999999999875
No 181
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=7.7e-09 Score=111.26 Aligned_cols=119 Identities=20% Similarity=0.269 Sum_probs=80.2
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhc-c
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIAT-Q 539 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~-~ 539 (757)
+++++..++|+||||+||||+++++++..+..++.+..++- .....+..+| ...++|+||++.+.. .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~~~ 232 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGGES 232 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTTTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHHHH
Confidence 56666779999999999999999999988776655443321 0111233333 235789999999875 3
Q ss_pred cCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecC
Q 004384 540 RGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 540 r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~ 601 (757)
|+...+ ... .....+...+||. +.|+++||+++.+ ++++||||++..++..+
T Consensus 233 r~l~~~---~~~-~~~~~l~~~ldG~-----v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 233 RDLPSG---QGI-NNLDNLRDYLDGS-----VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTCCCC---SHH-HHHHTTHHHHHCS-----SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hhcccc---Ccc-hHHHHHHHHhcCC-----CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 322111 111 1234555667763 4578889999999 89999999998887755
No 182
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.67 E-value=3.2e-08 Score=111.79 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
.+++.+.|+||+|+|||||+++|++.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456779999999999999999999864
No 183
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.63 E-value=2.9e-08 Score=82.84 Aligned_cols=76 Identities=33% Similarity=0.630 Sum_probs=66.8
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccc
Q 004384 323 IGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVS 402 (757)
Q Consensus 323 i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (757)
-.+|+.++|.+||+.+++++++..++++..++..|+||+|+||.++|++|++.++++. ...++
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 3689999999999999999998888999999999999999999999999999988764 23478
Q ss_pred hhhhhhhhccCCC
Q 004384 403 NEHFQTALGTSNP 415 (757)
Q Consensus 403 ~~~~~~al~~~~p 415 (757)
.+||..++..+.|
T Consensus 71 ~~df~~Al~~v~p 83 (86)
T 2krk_A 71 QEDFEMAVAKVMQ 83 (86)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcc
Confidence 8889888877654
No 184
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.61 E-value=5.6e-08 Score=105.40 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=82.9
Q ss_pred ccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHH-HHHhCCceEE-EeCc---cccccc--
Q 004384 433 IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAI-ANECQANFIS-VKGP---ELLTMW-- 505 (757)
Q Consensus 433 i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~l-a~~~~~~~i~-v~~~---~l~~~~-- 505 (757)
|.|++.+|..|.-.+...... ....-++||.|+||| ||++|+++ +..+....+. ..++ .+....
T Consensus 215 I~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEc
Confidence 668888888776554432111 112236999999999 99999999 7665432221 1111 111110
Q ss_pred -cCchhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-------CCCCeEEEEeeC
Q 004384 506 -FGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-------SAKKTVFIIGAT 577 (757)
Q Consensus 506 -~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-------~~~~~v~vi~tT 577 (757)
-| ..-. ...+..|.. .++|+|||+.+ ....+..|+..|+.- .-..++.||||+
T Consensus 286 ~tG-~~~~-~G~l~LAdg---Gvl~lDEIn~~--------------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 286 DRG-WALR-AGAAVLADG---GILAVDHLEGA--------------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp SSS-EEEE-ECHHHHTTT---SEEEEECCTTC--------------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred CCC-cccC-CCeeEEcCC---CeeehHhhhhC--------------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 01 1000 112233433 39999999885 345667777776631 112467899999
Q ss_pred CCCC-----------CCCccccCCCccceEEE-ecCCCHHH
Q 004384 578 NRPD-----------IIDPALLRPGRLDQLIY-IPLPDEDS 606 (757)
Q Consensus 578 n~~~-----------~ld~allrpgRf~~~i~-~~~p~~~~ 606 (757)
|..+ .|.++++. |||..+. ...|+.+.
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 9875 67789998 9997554 45565543
No 185
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.60 E-value=1.7e-06 Score=92.53 Aligned_cols=184 Identities=14% Similarity=0.150 Sum_probs=110.8
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-----c-
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL-----T- 503 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~-----~- 503 (757)
...+.|-++..+.|.+ +.. ..++++||+|+|||+|++.++...+..++.+++.... +
T Consensus 12 ~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISY 74 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCH
T ss_pred HHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCH
Confidence 3456666666666655 331 3699999999999999999999887777777765320 0
Q ss_pred --------------------------cccC--------c------hhHHHHHHHHHHHhC--CCeEEEEecccchhcccC
Q 004384 504 --------------------------MWFG--------E------SEANVREIFDKARQS--APCVLFFDELDSIATQRG 541 (757)
Q Consensus 504 --------------------------~~~g--------~------~e~~i~~lf~~a~~~--~p~il~iDEid~l~~~r~ 541 (757)
...| . ....+..+++..... .|.+|+|||++.+....
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~- 153 (357)
T 2fna_A 75 KDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR- 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-
Confidence 0000 0 012344555554443 38999999999986420
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCC---------CCccccCCCccceEEEecCCCHHHHHHHHH
Q 004384 542 SSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDI---------IDPALLRPGRLDQLIYIPLPDEDSRHQIFK 612 (757)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~---------ld~allrpgRf~~~i~~~~p~~~~r~~Il~ 612 (757)
.......+..+.... .++.+|.|++.... ....+ .||+...+.+++.+.++..++++
T Consensus 154 ------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 154 ------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp ------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHHHH
T ss_pred ------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHHHH
Confidence 011233444444332 23445555543211 11122 24777899999999999999998
Q ss_pred HhhccCCCCCccCHHHHHHHcCCCCHHHHHHHHHH
Q 004384 613 ACLRKSPVSKDVDLRALAKYTQGFSGADITEICQR 647 (757)
Q Consensus 613 ~~l~~~~~~~~~d~~~la~~~~g~sg~di~~~~~~ 647 (757)
..+...+...+ +...+.+.+.|+. .-+..++..
T Consensus 220 ~~~~~~~~~~~-~~~~i~~~t~G~P-~~l~~~~~~ 252 (357)
T 2fna_A 220 RGFQEADIDFK-DYEVVYEKIGGIP-GWLTYFGFI 252 (357)
T ss_dssp HHHHHHTCCCC-CHHHHHHHHCSCH-HHHHHHHHH
T ss_pred HHHHHcCCCCC-cHHHHHHHhCCCH-HHHHHHHHH
Confidence 87754333322 2377888888854 446555543
No 186
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.58 E-value=2.4e-08 Score=103.65 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=68.7
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
|+.++..++|+||||||||+|+..++...+. .|+.....+..+.+....+..+..+++...... ++|||+++.+..
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~ 196 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIG 196 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccc
Confidence 4566777999999999999999999876443 355552233233333444555555666655544 999999999865
Q ss_pred CCCCC--chHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHh
Q 004384 266 KREKT--HGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPAL 311 (757)
Q Consensus 266 ~~~~~--~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l 311 (757)
..... .+.. .+...+++..+..+....++.++.++| +...++++
T Consensus 197 ~~~~~s~~G~v-~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 197 AAGGNTTSGGI-SRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ----------C-CHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccchH-HHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 43221 1111 122334444444433334567777777 44455544
No 187
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.58 E-value=7.5e-08 Score=94.22 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=78.1
Q ss_pred ceeeecCCCCChhHHHHHHHHHh--------C-CceEEEeCcccccccc----------CchhH--HHHHHHHH---HHh
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC--------Q-ANFISVKGPELLTMWF----------GESEA--NVREIFDK---ARQ 522 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~--------~-~~~i~v~~~~l~~~~~----------g~~e~--~i~~lf~~---a~~ 522 (757)
-.+++|+||+|||++|..++... + .+.+..+..++...+. ..... ....+++. +.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~- 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE- 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc-
Confidence 37899999999999998875443 2 4555555555533221 11110 11233333 33
Q ss_pred CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecCC
Q 004384 523 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLP 602 (757)
Q Consensus 523 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~p 602 (757)
...++|+|||++.+.+.|..... ..+ ++..|.... ...+-||.+|+.++.||.++.+ |++..+++++|
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e-----~~r----ll~~l~~~r-~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK-----IPE----NVQWLNTHR-HQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC-----CCH----HHHGGGGTT-TTTCEEEEEESCGGGBCHHHHT--TEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccch-----hHH----HHHHHHhcC-cCCeEEEEECCCHHHHhHHHHH--HhheEEEEcCc
Confidence 33579999999999876532211 122 455555433 2344556677779999999887 99999999886
Q ss_pred CHH
Q 004384 603 DED 605 (757)
Q Consensus 603 ~~~ 605 (757)
...
T Consensus 154 ~~~ 156 (199)
T 2r2a_A 154 KMG 156 (199)
T ss_dssp SSC
T ss_pred ccC
Confidence 543
No 188
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.57 E-value=7.9e-08 Score=78.88 Aligned_cols=73 Identities=34% Similarity=0.668 Sum_probs=64.1
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccch
Q 004384 324 GVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSN 403 (757)
Q Consensus 324 ~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (757)
|.|+.++|.+||+.+++++++..++++..++..|+||+|+||..+|++|++.++++. ...++.
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 689999999999999999998888999999999999999999999999999988763 234777
Q ss_pred hhhhhhhccC
Q 004384 404 EHFQTALGTS 413 (757)
Q Consensus 404 ~~~~~al~~~ 413 (757)
+||..++..+
T Consensus 64 ~d~~~Al~~v 73 (78)
T 3kw6_A 64 EDFEMAVAKV 73 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 189
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.49 E-value=9.1e-08 Score=94.10 Aligned_cols=70 Identities=34% Similarity=0.429 Sum_probs=47.4
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccccCch-hHHHHHHHHHHHhCCCeEEEEecccchh
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSIA 537 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~~g~~-e~~i~~lf~~a~~~~p~il~iDEid~l~ 537 (757)
.+++|+||||||||++|++++..+ +.+++.++++++...+.... ...+..++...... .+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKKV--PVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHHS--SEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcCC--CEEEEcCCCCCc
Confidence 679999999999999999999987 56777788777654322110 11123334444333 599999997753
No 190
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.48 E-value=4.4e-08 Score=116.34 Aligned_cols=29 Identities=34% Similarity=0.619 Sum_probs=25.6
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVAN 214 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~ 214 (757)
++.+.+++.+.|+||+|||||||+++|++
T Consensus 455 sl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 455 QLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 34567889999999999999999999984
No 191
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.46 E-value=1.3e-07 Score=107.21 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.2
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
.+.+++.+.|+||+|||||||+++|++.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 36788999999999999999999999865
No 192
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.45 E-value=2.5e-07 Score=77.63 Aligned_cols=74 Identities=28% Similarity=0.466 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhh
Q 004384 327 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHF 406 (757)
Q Consensus 327 ~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (757)
+.++|.+||+.+++++++..++++..++..|+||+|+||.++|++|++.++++.. ..++.+||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~-----------------~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR-----------------KVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC-----------------SSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc-----------------ccCCHHHH
Confidence 5678999999999999998899999999999999999999999999999987642 24788899
Q ss_pred hhhhccCCCCC
Q 004384 407 QTALGTSNPSA 417 (757)
Q Consensus 407 ~~al~~~~p~~ 417 (757)
..++..+.+..
T Consensus 65 ~~Al~~v~~~~ 75 (88)
T 3vlf_B 65 LKAVDKVISGY 75 (88)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHhcCc
Confidence 99988876543
No 193
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.44 E-value=1e-07 Score=109.24 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
.+.+++.+.|+||+|+|||||+++|++.+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 35788899999999999999999999865
No 194
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.42 E-value=3.2e-07 Score=99.75 Aligned_cols=166 Identities=22% Similarity=0.285 Sum_probs=99.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHhC---CceEEEeCcccccc-------------ccCchhHHHHHHHHHHHhCCCeEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVLF 529 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~~~-------------~~g~~e~~i~~lf~~a~~~~p~il~ 529 (757)
..++|+|++|||||++|+++...+. .+|+.++++.+... |.|... .....|..|.. .++|
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlf 236 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTLF 236 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEE
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEEE
Confidence 4489999999999999999998764 68999999875321 112111 12245666655 4999
Q ss_pred EecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-----CC----CCeEEEEeeCCCC-------CCCCccccCCCcc
Q 004384 530 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SA----KKTVFIIGATNRP-------DIIDPALLRPGRL 593 (757)
Q Consensus 530 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~----~~~v~vi~tTn~~-------~~ld~allrpgRf 593 (757)
+|||+.+. ..+...||..|+.. .. ..++-||+|||+. ..+.+.+.- |+
T Consensus 237 ldei~~l~--------------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl 300 (387)
T 1ny5_A 237 LDEIGELS--------------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RL 300 (387)
T ss_dssp EESGGGCC--------------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HH
T ss_pred EcChhhCC--------------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hh
Confidence 99999973 34555666655431 11 1256799999974 123333332 44
Q ss_pred c-eEEEecCCCH--HHHHHHHHHhhcc----CCCC-CccCHHHHHHHc-CCCC--HHHHHHHHHHHHHH
Q 004384 594 D-QLIYIPLPDE--DSRHQIFKACLRK----SPVS-KDVDLRALAKYT-QGFS--GADITEICQRACKY 651 (757)
Q Consensus 594 ~-~~i~~~~p~~--~~r~~Il~~~l~~----~~~~-~~~d~~~la~~~-~g~s--g~di~~~~~~a~~~ 651 (757)
. ..|++|+... ++...+++.++++ .+.. ..++-+.+.... ..|. -+++++++..|+..
T Consensus 301 ~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 301 GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 3 4466666532 5556666666543 2222 223333333322 3344 46999998888764
No 195
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.41 E-value=1.2e-05 Score=85.78 Aligned_cols=180 Identities=18% Similarity=0.208 Sum_probs=103.8
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh-------
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------- 229 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~------- 229 (757)
-+.+.|-+++++.+.+.+.. +..++|+||+|+|||+|++.++...+ .+.+++....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 35688999999988877642 25799999999999999999999876 5566654321
Q ss_pred -----h---hcc-------------------------chhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHH
Q 004384 230 -----S---KLA-------------------------GESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVER 276 (757)
Q Consensus 230 -----~---~~~-------------------------g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 276 (757)
. ... ......+..+.+.+....|.+|+|||++.+........ .
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~----~ 149 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG----K 149 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTT----H
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccch----h
Confidence 0 000 00111122222222222489999999998864110001 1
Q ss_pred HHHHHHHHHhhcccCCCeEEEEEecCCCC---------CCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHhcCCCC-CC
Q 004384 277 RIVSQLLTLMDGLKSRAHVIVIGATNRPN---------SIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKL-SD 346 (757)
Q Consensus 277 ~~~~~Ll~~l~~~~~~~~v~vI~atn~~~---------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~l-~~ 346 (757)
.+...|..+++.. .++.+|.++.... .....+ .+|+...+.+++.+.++-.+++...+..... ..
T Consensus 150 ~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~ 224 (350)
T 2qen_A 150 ELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPL--YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP 224 (350)
T ss_dssp HHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC
T ss_pred hHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 2233333344332 2344444443211 111111 2356678999999999998888765543222 13
Q ss_pred chhhhHHhHhcCCCch
Q 004384 347 DVDLERIAKDTHGYVG 362 (757)
Q Consensus 347 ~~~l~~la~~t~g~~~ 362 (757)
...+..+...+.|+..
T Consensus 225 ~~~~~~i~~~tgG~P~ 240 (350)
T 2qen_A 225 ENEIEEAVELLDGIPG 240 (350)
T ss_dssp HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCHH
Confidence 3456777788888653
No 196
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.40 E-value=2.7e-07 Score=90.62 Aligned_cols=70 Identities=26% Similarity=0.446 Sum_probs=46.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhhccchhH-HHHHHHHHHHHhcCCeEEEEccccccc
Q 004384 193 KGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSKLAGESE-SNLRKAFEEAEKNAPSIIFIDEIDSIA 264 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~~~g~~~-~~l~~vf~~a~~~~p~il~iDEid~l~ 264 (757)
.+++|+||||||||+|+++++..+ +..++.++++++......... ..+...+..... +.+|+|||++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 789999999999999999999887 566778888776543221110 011222333322 3599999997643
No 197
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.40 E-value=4.3e-06 Score=89.15 Aligned_cols=187 Identities=19% Similarity=0.245 Sum_probs=107.2
Q ss_pred cccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc-------
Q 004384 430 WEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELL------- 502 (757)
Q Consensus 430 ~~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~------- 502 (757)
-..+.|-+...+.|.+.+.. .+.++++||+|+|||+|++.++...+ .+.+++....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~---------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~ 73 (350)
T 2qen_A 11 REDIFDREEESRKLEESLEN---------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHIT 73 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHH---------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBC
T ss_pred hHhcCChHHHHHHHHHHHhc---------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCC
Confidence 34566777666666655431 14699999999999999999998875 5555543221
Q ss_pred -----c---cccCc---------------------hhHHHHHHHH----HHHhCCCeEEEEecccchhcccCCCCCCCCc
Q 004384 503 -----T---MWFGE---------------------SEANVREIFD----KARQSAPCVLFFDELDSIATQRGSSVGDAGG 549 (757)
Q Consensus 503 -----~---~~~g~---------------------~e~~i~~lf~----~a~~~~p~il~iDEid~l~~~r~~~~~~~~~ 549 (757)
. ..++. ....+..+++ .+....|.+|+|||++.+..... .
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-------~ 146 (350)
T 2qen_A 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-------R 146 (350)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-------T
T ss_pred HHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-------c
Confidence 0 00000 0112233332 23222389999999999864210 0
Q ss_pred chHHHHHHHHHhhcCCCCCCeEEEEeeCCCC---C------CCCccccCCCccceEEEecCCCHHHHHHHHHHhhccCCC
Q 004384 550 AADRVLNQLLTEMDGMSAKKTVFIIGATNRP---D------IIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPV 620 (757)
Q Consensus 550 ~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~---~------~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~ 620 (757)
....++..+-..++.. .++.+|.|++.. . .....+. ||+...+.+++.+.++..++++..+...+.
T Consensus 147 ~~~~~~~~L~~~~~~~---~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~ 221 (350)
T 2qen_A 147 GGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNL 221 (350)
T ss_dssp TTHHHHHHHHHHHHHC---TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred chhhHHHHHHHHHHhc---CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 1123333333333322 244444444332 1 1112222 477779999999999999999887765443
Q ss_pred C-CccCHHHHHHHcCCCCHHHHHHHHH
Q 004384 621 S-KDVDLRALAKYTQGFSGADITEICQ 646 (757)
Q Consensus 621 ~-~~~d~~~la~~~~g~sg~di~~~~~ 646 (757)
. .+..+..+.+.+.|+. .-+..++.
T Consensus 222 ~~~~~~~~~i~~~tgG~P-~~l~~~~~ 247 (350)
T 2qen_A 222 DVPENEIEEAVELLDGIP-GWLVVFGV 247 (350)
T ss_dssp CCCHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 3 2234667778888754 45555554
No 198
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.37 E-value=8.7e-06 Score=86.98 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=103.0
Q ss_pred CcccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh------
Q 004384 156 GYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM------ 229 (757)
Q Consensus 156 ~~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~------ 229 (757)
..+.+.|-+++++.+.+ +.. ..++|+||+|+|||+|++.++...+..++.+++....
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hcC----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCC
Confidence 34568888888888776 421 3799999999999999999999887767777765320
Q ss_pred -hhccch---------------------------------------hHHHHHHHHHHHHhc--CCeEEEEcccccccCCC
Q 004384 230 -SKLAGE---------------------------------------SESNLRKAFEEAEKN--APSIIFIDEIDSIAPKR 267 (757)
Q Consensus 230 -~~~~g~---------------------------------------~~~~l~~vf~~a~~~--~p~il~iDEid~l~~~~ 267 (757)
...... ....+..+++..... .|.+|+|||++.+....
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~ 153 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR 153 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC
Confidence 000000 001233344444332 38899999999886521
Q ss_pred CCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHH-------hhccCCcceEEEeCCCCHHHHHHHHHHHhc
Q 004384 268 EKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA-------LRRFGRFDREIDIGVPDEVGRLEVLRIHTK 340 (757)
Q Consensus 268 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~-------l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 340 (757)
... +...|..+.+.. .++.+|.+++....+... -...+|+...+.+++.+.++..+++...+.
T Consensus 154 ~~~-------~~~~l~~~~~~~---~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 154 GVN-------LLPALAYAYDNL---KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp TCC-------CHHHHHHHHHHC---TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred chh-------HHHHHHHHHHcC---CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 111 112222233321 234444444432111110 001235567899999999999888876543
Q ss_pred CCCCCCchhhhHHhHhcCCCch
Q 004384 341 NMKLSDDVDLERIAKDTHGYVG 362 (757)
Q Consensus 341 ~~~l~~~~~l~~la~~t~g~~~ 362 (757)
......+ +...+...+.|+..
T Consensus 224 ~~~~~~~-~~~~i~~~t~G~P~ 244 (357)
T 2fna_A 224 EADIDFK-DYEVVYEKIGGIPG 244 (357)
T ss_dssp HHTCCCC-CHHHHHHHHCSCHH
T ss_pred HcCCCCC-cHHHHHHHhCCCHH
Confidence 2122111 13677888888754
No 199
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.34 E-value=4e-07 Score=75.61 Aligned_cols=74 Identities=27% Similarity=0.424 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhh
Q 004384 327 DEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHF 406 (757)
Q Consensus 327 ~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (757)
+.++|.+||+.+++++++..++++..++..|+||+|+|+..+|++|++.++++. ...++.+||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 678999999999999998888999999999999999999999999998887643 234788899
Q ss_pred hhhhccCCCCC
Q 004384 407 QTALGTSNPSA 417 (757)
Q Consensus 407 ~~al~~~~p~~ 417 (757)
..++..+.|+.
T Consensus 65 ~~Al~~~~ps~ 75 (83)
T 3aji_B 65 EKAYKTVIKKD 75 (83)
T ss_dssp HHHHHHHCC--
T ss_pred HHHHHHHccCc
Confidence 99998887764
No 200
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.31 E-value=4.2e-07 Score=98.06 Aligned_cols=166 Identities=22% Similarity=0.309 Sum_probs=98.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCC--ceEEEeCcccccc-------------ccCchhHHHHHHHHHHHhCCCeEEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQA--NFISVKGPELLTM-------------WFGESEANVREIFDKARQSAPCVLFF 530 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~--~~i~v~~~~l~~~-------------~~g~~e~~i~~lf~~a~~~~p~il~i 530 (757)
..++++|++||||+++|+++....+. .|+.+++..+... |.|... .-...|+.|... .||+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a~~g---tlfl 228 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELADQG---TLFL 228 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHTTTS---EEEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhcCCC---eEEe
Confidence 34999999999999999999988754 3999999865321 111111 112355666544 8999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCC-----CCC----CeEEEEeeCCCC-------CCCCccccCCCccc
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGM-----SAK----KTVFIIGATNRP-------DIIDPALLRPGRLD 594 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~-----~~~----~~v~vi~tTn~~-------~~ld~allrpgRf~ 594 (757)
|||+.+. ..+...||..|+.- ... -++-+|+|||+. ..+.+.|.. |+.
T Consensus 229 dei~~l~--------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~ 292 (368)
T 3dzd_A 229 DEVGELD--------------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLS 292 (368)
T ss_dssp ETGGGSC--------------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHT
T ss_pred cChhhCC--------------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhC
Confidence 9999973 44556666666531 111 145688888853 122233333 444
Q ss_pred -eEEEecCCCH--HHHHHHHHHhhccC----CCC-CccCHHHHHHHc-CCC--CHHHHHHHHHHHHHH
Q 004384 595 -QLIYIPLPDE--DSRHQIFKACLRKS----PVS-KDVDLRALAKYT-QGF--SGADITEICQRACKY 651 (757)
Q Consensus 595 -~~i~~~~p~~--~~r~~Il~~~l~~~----~~~-~~~d~~~la~~~-~g~--sg~di~~~~~~a~~~ 651 (757)
..|++|+..+ ++...+++.++++. +.. ..++-+.+.... ..| +-+++++++..|+..
T Consensus 293 ~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 293 VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVIL 360 (368)
T ss_dssp SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHT
T ss_pred CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 2577887755 66666666666432 211 223333333222 123 447888888877653
No 201
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.31 E-value=2.2e-07 Score=99.96 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=76.0
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhhhhccchhHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
+++++++..++|+||||||||||++++++..+..++.+..++- .....+..+| ...++++||++.+..
T Consensus 163 ~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg~~~------q~~~~l~dd~~~~~~ 230 (377)
T 1svm_A 163 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELGVAI------DQFLVVFEDVKGTGG 230 (377)
T ss_dssp HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHGGGT------TCSCEEETTCCCSTT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHHHhc------chhHHHHHHHHHHHH
Confidence 3578899999999999999999999999998876654333221 1111122222 234679999998876
Q ss_pred -CCCCCc-hHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCC
Q 004384 266 -KREKTH-GEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV 325 (757)
Q Consensus 266 -~~~~~~-~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~ 325 (757)
.++... .... ....+.+.+++ .+.|+.++|+++.+ +++.++++++..+....
T Consensus 231 ~~r~l~~~~~~~--~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 231 ESRDLPSGQGIN--NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTCCCCSHHH--HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHhhccccCcch--HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 222111 1111 12334444554 23567789999988 67878888876555433
No 202
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.30 E-value=3.5e-06 Score=80.91 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCe
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAF 219 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~ 219 (757)
.++|+||||||||||++.|++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 58999999999999999999988643
No 203
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.29 E-value=5.6e-07 Score=94.62 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=45.8
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhC----CceEEEeCccccccccCch-hHHHHHHHHHHHhCCCeEEEEecccch
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGPELLTMWFGES-EANVREIFDKARQSAPCVLFFDELDSI 536 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~----~~~i~v~~~~l~~~~~g~~-e~~i~~lf~~a~~~~p~il~iDEid~l 536 (757)
..+++|+||||||||+||+++|..+. .+++.+..+++...+.... ......++..... +.+|||||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN--VPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT--SSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 46799999999999999999998654 6777788777654332211 1111222333332 359999999764
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.21 E-value=6.8e-07 Score=86.48 Aligned_cols=110 Identities=19% Similarity=0.237 Sum_probs=61.8
Q ss_pred cCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccccccCchhHHHHHHHHHHHhCCCeEEEEecccchhcccC
Q 004384 462 MSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRG 541 (757)
Q Consensus 462 ~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~ 541 (757)
++..++++||||||||||++|.++|..++...+.+..+. +.+ .++.+.. ..++++||+|.-.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~l~~--~kIiiLDEad~~~---- 116 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEPLTD--TKVAMLDDATTTC---- 116 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGGGTT--CSSEEEEEECHHH----
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcccCC--CCEEEEECCCchh----
Confidence 344467999999999999999999999865432221100 000 0111122 2499999998521
Q ss_pred CCCCCCCcchHHHHHHHHHhhcCCC------CC-----CeEEEEeeCCCCCCCCc---cccCCCccceEEEecC
Q 004384 542 SSVGDAGGAADRVLNQLLTEMDGMS------AK-----KTVFIIGATNRPDIIDP---ALLRPGRLDQLIYIPL 601 (757)
Q Consensus 542 ~~~~~~~~~~~~~~~~ll~~ld~~~------~~-----~~v~vi~tTn~~~~ld~---allrpgRf~~~i~~~~ 601 (757)
.+.+-..+-+.|||.. .+ ..--+|.|||.+=.-+. .+.+ |+. .+.||.
T Consensus 117 ---------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~-~f~F~~ 178 (212)
T 1tue_A 117 ---------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT-VFEFPN 178 (212)
T ss_dssp ---------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE-EEECCS
T ss_pred ---------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE-EEEcCC
Confidence 1222234555667742 01 12357888887432233 3444 765 666663
No 205
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.21 E-value=1.8e-06 Score=84.35 Aligned_cols=124 Identities=21% Similarity=0.262 Sum_probs=73.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh--------C-CeEEEEechhhhhhcc----------c---h--hHHHHHHHHHHHHh
Q 004384 194 GILLYGPPGSGKTLIARAVANET--------G-AFFFCINGPEIMSKLA----------G---E--SESNLRKAFEEAEK 249 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l--------~-~~~~~v~~~~l~~~~~----------g---~--~~~~l~~vf~~a~~ 249 (757)
..+++|+||||||+++..++... + .+++..+..++.-... . + ....+...+.. ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK-PE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-GG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-cc
Confidence 58999999999999988764332 3 4444555444422111 0 0 11122222111 23
Q ss_pred cCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCC
Q 004384 250 NAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPD 327 (757)
Q Consensus 250 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~ 327 (757)
...++|+|||++.+.+.+....... .++..+...+. ..+-+|.+++++..++..++. |+...+++..|.
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~------rll~~l~~~r~-~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~ 154 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP------ENVQWLNTHRH-QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNK 154 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC------HHHHGGGGTTT-TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECS
T ss_pred cCceEEEEEChhhhccCccccchhH------HHHHHHHhcCc-CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcc
Confidence 4467999999999976543222111 24444443332 345666777889999999987 888888877654
No 206
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.18 E-value=5.9e-07 Score=104.96 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIA 209 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLa 209 (757)
+.+++++.+.|+||+|||||||+
T Consensus 39 l~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 39 VEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHh
Confidence 34577889999999999999997
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.18 E-value=7.2e-06 Score=78.70 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.4
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCc
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQAN 492 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~ 492 (757)
+.|.||||+|||||++.+++.++..
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999987643
No 208
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.15 E-value=2e-06 Score=88.26 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.+++.+.|+||+|||||||+++|++.+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 456788999999999999999999999865
No 209
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.13 E-value=2.1e-06 Score=92.03 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=27.9
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 23 NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34567888999999999999999999999764
No 210
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.13 E-value=1.8e-06 Score=88.85 Aligned_cols=31 Identities=16% Similarity=0.239 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4567888999999999999999999998764
No 211
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.12 E-value=1.9e-06 Score=90.49 Aligned_cols=70 Identities=20% Similarity=0.396 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC----CeEEEEechhhhhhccchh-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEIMSKLAGES-ESNLRKAFEEAEKNAPSIIFIDEIDSI 263 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~----~~~~~v~~~~l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l 263 (757)
+.+++|+||||||||+|+++++..+. ..++.++.+++........ ...+...+.... .+.+|+|||++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 57899999999999999999998654 6677788777655332211 111122222222 3469999999654
No 212
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.09 E-value=4.2e-06 Score=79.85 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARA 211 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~ 211 (757)
+.+.+++-++|+||||||||||+++
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHH
Confidence 3457788999999999999999993
No 213
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.08 E-value=3.3e-06 Score=89.85 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 24 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 24 SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34567888999999999999999999999763
No 214
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.08 E-value=3.3e-06 Score=89.88 Aligned_cols=31 Identities=23% Similarity=0.263 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++...
T Consensus 49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4567889999999999999999999998763
No 215
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.07 E-value=3.4e-06 Score=84.93 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 25 sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567889999999999999999999998763
No 216
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.05 E-value=7.5e-06 Score=82.56 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=51.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHH--h-------CCeEEEEechhh------hh--hccc---------------h
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANE--T-------GAFFFCINGPEI------MS--KLAG---------------E 235 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~--l-------~~~~~~v~~~~l------~~--~~~g---------------~ 235 (757)
+++++..++|+||||+|||||++.++.. + +...+++++... .. ...+ .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5778899999999999999999999985 3 345666765431 00 0000 0
Q ss_pred -hH---HHHHHHHHHHHhcCCeEEEEcccccccCC
Q 004384 236 -SE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 236 -~~---~~l~~vf~~a~~~~p~il~iDEid~l~~~ 266 (757)
.. ..+..+.+......|.+++|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11 11222334444567899999999987753
No 217
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.05 E-value=8.7e-06 Score=78.74 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeE
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANETGAFF 220 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~ 220 (757)
+++...+++|+||||||||++|.++|+.+...+
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i 86 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAV 86 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEE
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 345566899999999999999999999987654
No 218
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=98.04 E-value=2.2e-05 Score=64.05 Aligned_cols=71 Identities=23% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCcEEEeccccccccCcchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCceEEECCCceEEecC
Q 004384 65 YGKRVHILPIDDTIEGVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEG 141 (757)
Q Consensus 65 ~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~~~~~~~~t~~~~~~ 141 (757)
.|++|+++|... .. +.++ +..+++++|. .+||.+||.|.+...++.+.|+|++++|. +++|+++|.|.+..
T Consensus 11 ~A~kVvLAP~~~-i~-~~~~-~~~~lk~~L~--grPV~~GD~I~i~~~G~~i~F~Vv~t~P~-~V~Vt~~T~I~i~~ 81 (83)
T 2jv2_A 11 IMSELKLKPLPK-VE-LPPD-FVDVIRIKLQ--GKTVRTGDVIGISILGKEVKFKVVQAYPS-PLRVEDRTKITLVT 81 (83)
T ss_dssp CCCEEEEEESSS-CC-CCHH-HHHHHHHHHT--TSEECTTCEEEEEETTEEEEEEEEEEESS-SEECCTTSEEEECC
T ss_pred EEEEEEEcCCCc-ee-cCcc-HHHHHHHHHC--CCCccCCCEEEEeeCCCEEEEEEEEecCc-cEEECCCcEEEEEe
Confidence 478899998842 22 4333 4679999996 59999999999864457899999999999 99999999998754
No 219
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.04 E-value=4.4e-06 Score=89.07 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 23 SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34567888999999999999999999998763
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.04 E-value=1.2e-05 Score=80.37 Aligned_cols=109 Identities=19% Similarity=0.289 Sum_probs=61.8
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh----hhhh----------c------------------
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE----IMSK----------L------------------ 232 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~----l~~~----------~------------------ 232 (757)
++.++..++|+||||+|||||++.+++.+ +..++.++... +... +
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhCCEEEEeccccccCce
Confidence 46788899999999999999999998654 34444444211 1000 0
Q ss_pred ----cchhHHHHHHHHHHHHhcCCe--EEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 233 ----AGESESNLRKAFEEAEKNAPS--IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 233 ----~g~~~~~l~~vf~~a~~~~p~--il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
..........+.+.+....|. ++++||+..+.... . .....+...|..+. ...++.++.+++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d---~-~~~~~~~~~l~~~~----~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDK---P-AMARKISYYLKRVL----NKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSC---G-GGHHHHHHHHHHHH----HHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCC---H-HHHHHHHHHHHHHH----HhCCCeEEEEeccC
Confidence 001122233344445556888 99999999876321 1 11233333333333 22356667677754
No 221
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.03 E-value=4.6e-06 Score=89.01 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 23 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 23 NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34567888999999999999999999998764
No 222
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.02 E-value=3.9e-06 Score=89.23 Aligned_cols=31 Identities=35% Similarity=0.504 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4567888999999999999999999998764
No 223
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.02 E-value=6.4e-06 Score=82.30 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=26.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.++..+.|+||||||||||++.+++..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999999854
No 224
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.99 E-value=5e-06 Score=89.08 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567888999999999999999999998753
No 225
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.98 E-value=2e-05 Score=85.49 Aligned_cols=122 Identities=24% Similarity=0.343 Sum_probs=73.0
Q ss_pred ccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC---CeEEEEechhhhhhc--
Q 004384 158 DDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG---AFFFCINGPEIMSKL-- 232 (757)
Q Consensus 158 ~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~---~~~~~v~~~~l~~~~-- 232 (757)
..+.|-...++++.+.+.. + ......|+|+|++|||||++++++....+ .+|+.++|..+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~-~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKK-I----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHH-H----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHH-h----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 3455655565555555443 1 12345699999999999999999987754 689999997653211
Q ss_pred ---cch----hHH---HHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----C----CC
Q 004384 233 ---AGE----SES---NLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RA 293 (757)
Q Consensus 233 ---~g~----~~~---~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----~----~~ 293 (757)
.|. ... .....|+.|. .++||+|||+.+... +...|+..++.-. . ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSLE-----------AQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCHH-----------HHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceeec
Confidence 110 000 0112344443 359999999988432 3345555554311 1 12
Q ss_pred eEEEEEecCCC
Q 004384 294 HVIVIGATNRP 304 (757)
Q Consensus 294 ~v~vI~atn~~ 304 (757)
.+.+|++||..
T Consensus 272 ~~rii~at~~~ 282 (387)
T 1ny5_A 272 NVRILAATNRN 282 (387)
T ss_dssp CCEEEEEESSC
T ss_pred cEEEEEeCCCC
Confidence 56788888863
No 226
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.97 E-value=3.3e-06 Score=69.77 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCchhHHHHHHHHHHHHHHHhhcccccccchhhhHHHhhhcccchhhhhh
Q 004384 329 VGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQT 408 (757)
Q Consensus 329 ~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~~~dl~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (757)
++|.+||+.+++++++..++++..++..|+||+|+|+.++|++|++.++++.. ..++.+||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-----------------~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-----------------YVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC-----------------SEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc-----------------CCcCHHHHHH
Confidence 36889999999999888888999999999999999999999999999887631 3478889998
Q ss_pred hhccCC
Q 004384 409 ALGTSN 414 (757)
Q Consensus 409 al~~~~ 414 (757)
++..+.
T Consensus 64 Al~~v~ 69 (82)
T 2dzn_B 64 AYATQV 69 (82)
T ss_dssp HHHTTC
T ss_pred HHHHHH
Confidence 888764
No 227
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.96 E-value=6.6e-06 Score=82.17 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=27.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||++++++.+.
T Consensus 25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4467888999999999999999999998764
No 228
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.95 E-value=2.2e-05 Score=79.37 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVA 213 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la 213 (757)
+++++..++|+||||||||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 67889999999999999999999998
No 229
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.95 E-value=1.2e-05 Score=82.11 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=26.9
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+++++.+.|+||+|||||||++++++.+.
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3456788899999999999999999998763
No 230
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.94 E-value=1e-05 Score=82.37 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|.||+|||||||+++|++.+.
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567888999999999999999999998764
No 231
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.93 E-value=6.3e-06 Score=87.55 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 20 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 20 SLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34567888999999999999999999998764
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.92 E-value=2.2e-05 Score=77.74 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 226 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~ 226 (757)
++.++..++|+||||+|||||++.++...+...+.++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 578889999999999999999999998556666777654
No 233
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.89 E-value=1.4e-05 Score=81.56 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4567888999999999999999999998764
No 234
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.88 E-value=1e-05 Score=86.78 Aligned_cols=31 Identities=35% Similarity=0.520 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|.||+|||||||+++|++...
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4567888999999999999999999998764
No 235
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.86 E-value=1.5e-05 Score=85.91 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.3
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+.+++.+.|.||+|||||||+++|++..
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3456789999999999999999999999865
No 236
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.85 E-value=5.4e-05 Score=80.49 Aligned_cols=114 Identities=20% Similarity=0.305 Sum_probs=67.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh----------------ccchhHHHHHHHHHHHH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----------------LAGESESNLRKAFEEAE 248 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~----------------~~g~~~~~l~~vf~~a~ 248 (757)
|+.++.-++|+||||||||||+..++..+ +..++++++...... .....+..+..+-....
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 56788889999999999999999998764 455666765432110 00112222222222233
Q ss_pred hcCCeEEEEcccccccCCC---CCCc---hHHHHHHHHHHHHHhhcccCCCeEEEEEec
Q 004384 249 KNAPSIIFIDEIDSIAPKR---EKTH---GEVERRIVSQLLTLMDGLKSRAHVIVIGAT 301 (757)
Q Consensus 249 ~~~p~il~iDEid~l~~~~---~~~~---~~~~~~~~~~Ll~~l~~~~~~~~v~vI~at 301 (757)
...+.++++|.+..+.+.. +... .....+.+.+++..+..+....++.||.+.
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~in 195 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFTN 195 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4678999999998887621 1011 112345555666656555444455555443
No 237
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.85 E-value=7.7e-06 Score=82.47 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=26.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+ +.+.|+||+|||||||++++++.+.
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45677 8899999999999999999998764
No 238
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.81 E-value=1.6e-05 Score=80.52 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567889999999999999999999998764
No 239
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.81 E-value=1.9e-05 Score=79.99 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=24.5
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCC
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQA 491 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~ 491 (757)
+..+++||||||||||++|+++|..+..
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3567999999999999999999997654
No 240
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.80 E-value=3e-05 Score=82.79 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=33.0
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh---------CCeEEEEech
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGP 226 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l---------~~~~~~v~~~ 226 (757)
.+++++.-+.|+||||||||||++.++... +...+++++.
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e 174 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 174 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCC
Confidence 467889999999999999999999999986 2345667653
No 241
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.79 E-value=1.5e-05 Score=81.08 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=27.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|+|||||++++++.+.
T Consensus 26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888999999999999999999998764
No 242
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.79 E-value=0.00021 Score=76.76 Aligned_cols=120 Identities=25% Similarity=0.447 Sum_probs=71.8
Q ss_pred cccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCe--EEEEechhhhhhcc---
Q 004384 159 DVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAF--FFCINGPEIMSKLA--- 233 (757)
Q Consensus 159 ~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~--~~~v~~~~l~~~~~--- 233 (757)
++.|....+.++.+.+...- .....++++|++||||+++++++....+.. |+.++|..+.....
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a-----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA-----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH-----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhh-----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 46666666666655543211 223469999999999999999998876543 99999976532110
Q ss_pred --c----hhH---HHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhccc-----C----CCeE
Q 004384 234 --G----ESE---SNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLK-----S----RAHV 295 (757)
Q Consensus 234 --g----~~~---~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~-----~----~~~v 295 (757)
| ... ..-...|+.+. ...||+|||+.+... ....|+..++.-. . ...+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~~-----------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQR-----------VQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCHH-----------HHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCHH-----------HHHHHHHHHHhCCcccCCCCcceeeee
Confidence 0 000 00011344443 358999999988432 3355666664311 1 1246
Q ss_pred EEEEecCC
Q 004384 296 IVIGATNR 303 (757)
Q Consensus 296 ~vI~atn~ 303 (757)
-+|++||.
T Consensus 265 rii~at~~ 272 (368)
T 3dzd_A 265 RVISATNK 272 (368)
T ss_dssp EEEEEESS
T ss_pred EEEEecCC
Confidence 68888885
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.78 E-value=4.4e-05 Score=75.51 Aligned_cols=40 Identities=28% Similarity=0.308 Sum_probs=32.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCcc
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPE 500 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~ 500 (757)
|+.+..-++|+||||+|||++++.+|...+.+.+.++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4555566999999999999999999986566777776554
No 244
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.78 E-value=2.8e-05 Score=79.78 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34567889999999999999999999998753
No 245
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.78 E-value=5.9e-05 Score=80.20 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=69.5
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc-------------c---cCchhHHHHHHHHHHH
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM-------------W---FGESEANVREIFDKAR 521 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~-------------~---~g~~e~~i~~lf~~a~ 521 (757)
|+.+..-++|+||||+|||||+..++..+ +...+.+++.+.... + ....+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 45555669999999999999999998864 456667776553221 0 0112233333333344
Q ss_pred hCCCeEEEEecccchhccc--CCCCCCC-CcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 522 QSAPCVLFFDELDSIATQR--GSSVGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 522 ~~~p~il~iDEid~l~~~r--~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
...+.++++|.+..+.+.. ....++. .....+.+.+++..|..+....++.||.+
T Consensus 137 ~~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp TSCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred hcCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5778999999999887521 1111111 11345677777777766544444455544
No 246
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.78 E-value=4.2e-05 Score=78.57 Aligned_cols=32 Identities=34% Similarity=0.455 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 39 TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567889999999999999999999998763
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.78 E-value=3.8e-05 Score=83.19 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=66.7
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---------CCeEEEEechhhhh--------hccc----------------
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEIMS--------KLAG---------------- 234 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---------~~~~~~v~~~~l~~--------~~~g---------------- 234 (757)
|+.++..++|+||||||||||++.++-.. +...+++++.+... ...+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 68889999999999999999999776332 23466666543110 0000
Q ss_pred ---hhHHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHH--HHHHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 235 ---ESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEV--ERRIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 235 ---~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~--~~~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
.....+..+........|.+++||++..+....-...+.+ ..+....++..+..+....++.||.+++.
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0011223333444456789999999988876432211122 22334555666655554446667767664
No 248
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.76 E-value=9.3e-06 Score=86.58 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=27.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|.||+|||||||+++|++...
T Consensus 25 sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 25 NINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34567888999999999999999999998753
No 249
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.75 E-value=2.5e-05 Score=79.16 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|+|||||+++|++.+.
T Consensus 20 sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 20 SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34567888999999999999999999998764
No 250
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.74 E-value=1.4e-05 Score=78.94 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.1
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||++++++.+.
T Consensus 30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457788899999999999999999998764
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.74 E-value=3.8e-05 Score=81.91 Aligned_cols=78 Identities=29% Similarity=0.421 Sum_probs=50.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh----hccc------------hhHHHHHHHHHHHH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG------------ESESNLRKAFEEAE 248 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~----~~~g------------~~~~~l~~vf~~a~ 248 (757)
|++++..++|+||||||||||+..++... +...++++...... ...| ..+..+..+.....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 56778889999999999999999988654 44555665432111 0011 11222222222333
Q ss_pred hcCCeEEEEcccccccC
Q 004384 249 KNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 249 ~~~p~il~iDEid~l~~ 265 (757)
...|.+++||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 55689999999999874
No 252
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.73 E-value=2.3e-05 Score=79.14 Aligned_cols=31 Identities=29% Similarity=0.338 Sum_probs=27.1
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+++++.+.|+||+|||||||+++|++.+.
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4567888999999999999999999998753
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.73 E-value=5.5e-05 Score=76.12 Aligned_cols=78 Identities=13% Similarity=0.181 Sum_probs=51.5
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHH--h-------CCceEEEeCccccc--------cccCc---------------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANE--C-------QANFISVKGPELLT--------MWFGE--------------- 508 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~--~-------~~~~i~v~~~~l~~--------~~~g~--------------- 508 (757)
|+.+..-++|+||||+|||+|++.++.. . +.+.+.+++.+... ..+|.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4555666999999999999999999985 2 34667777655210 00110
Q ss_pred h-h---HHHHHHHHHHHhCCCeEEEEecccchhc
Q 004384 509 S-E---ANVREIFDKARQSAPCVLFFDELDSIAT 538 (757)
Q Consensus 509 ~-e---~~i~~lf~~a~~~~p~il~iDEid~l~~ 538 (757)
+ + ..+..+.+......|.++++||+..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 1 1 1123344455556789999999998875
No 254
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.72 E-value=0.00011 Score=74.18 Aligned_cols=129 Identities=23% Similarity=0.211 Sum_probs=72.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHH--HH--hCCceEEEeCcccccc------ccC-----------------------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIA--NE--CQANFISVKGPELLTM------WFG----------------------- 507 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la--~~--~~~~~i~v~~~~l~~~------~~g----------------------- 507 (757)
++.+..-++|.||||+|||||++.++ .. .+...+.+.+.+.... .+|
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccc
Confidence 55666669999999999999999998 43 2344444443321100 000
Q ss_pred -------------chhHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEE
Q 004384 508 -------------ESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFII 574 (757)
Q Consensus 508 -------------~~e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi 574 (757)
........+........|.++++||.-++..... + .....+.+..++..+.. .+..||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~----d-~~~~~~~l~~l~~~l~~----~g~tii 176 (251)
T 2ehv_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE----E-ERKIREVLLKLNTILLE----MGVTTI 176 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS----S-GGGHHHHHHHHHHHHHH----HCCEEE
T ss_pred cccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC----C-HHHHHHHHHHHHHHHHH----CCCeEE
Confidence 0111223333444557899999999988875321 1 12344556667666642 244667
Q ss_pred eeCCCCCCCC-----ccccCCCcc-ceEEEec
Q 004384 575 GATNRPDIID-----PALLRPGRL-DQLIYIP 600 (757)
Q Consensus 575 ~tTn~~~~ld-----~allrpgRf-~~~i~~~ 600 (757)
.+|+..+... +.+.. -+ |.++.+.
T Consensus 177 ~vtH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 177 LTTEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp EEECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred EEECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 7777665542 22222 45 7777664
No 255
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.72 E-value=2e-05 Score=80.54 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=50.3
Q ss_pred hHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC---eEEEEechhh--h-h--------hccchhHHHHHHHHHHHH
Q 004384 183 LFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGPEI--M-S--------KLAGESESNLRKAFEEAE 248 (757)
Q Consensus 183 ~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~---~~~~v~~~~l--~-~--------~~~g~~~~~l~~vf~~a~ 248 (757)
.++++.+.++..++|+||+||||||+++++++.+.. --+.+.+..+ . . ...+.....++..+..+.
T Consensus 16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL 95 (261)
T 2eyu_A 16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 95 (261)
T ss_dssp HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH
T ss_pred HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH
Confidence 344444677888999999999999999999987631 1222222111 0 0 000101123466777777
Q ss_pred hcCCeEEEEcccc
Q 004384 249 KNAPSIIFIDEID 261 (757)
Q Consensus 249 ~~~p~il~iDEid 261 (757)
.+.|.++++||+-
T Consensus 96 ~~~p~illlDEp~ 108 (261)
T 2eyu_A 96 REDPDVIFVGEMR 108 (261)
T ss_dssp HHCCSEEEESCCC
T ss_pred hhCCCEEEeCCCC
Confidence 7899999999963
No 256
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.72 E-value=4.9e-05 Score=77.17 Aligned_cols=29 Identities=28% Similarity=0.483 Sum_probs=26.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
+.+.+++.+.|+||+|||||||+++|++.
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678889999999999999999999996
No 257
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.72 E-value=4e-05 Score=78.26 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=27.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4567889999999999999999999998753
No 258
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.71 E-value=6.7e-05 Score=79.96 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---------CCeEEEEechhhhh--------hccc----------------
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEIMS--------KLAG---------------- 234 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---------~~~~~~v~~~~l~~--------~~~g---------------- 234 (757)
|++++.-++|+||||||||+|+..++... +...++++....+. ...+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 67888899999999999999999999862 44566666543100 0000
Q ss_pred hhH---HHHHHHHHHHHh--cCCeEEEEcccccccCCCCCCchHHHH--HHHHHHHHHhhcccCCCeEEEEEecCC
Q 004384 235 ESE---SNLRKAFEEAEK--NAPSIIFIDEIDSIAPKREKTHGEVER--RIVSQLLTLMDGLKSRAHVIVIGATNR 303 (757)
Q Consensus 235 ~~~---~~l~~vf~~a~~--~~p~il~iDEid~l~~~~~~~~~~~~~--~~~~~Ll~~l~~~~~~~~v~vI~atn~ 303 (757)
..+ ..+..+...... ..+.+++||.+..+....-...+++.. ..+.+++..+..+....++.||.+.+.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~ 273 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQM 273 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeec
Confidence 011 112222333444 678899999999887432111112221 123444444444433345566655543
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.70 E-value=3.1e-05 Score=82.62 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=51.2
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc----ccC------------chhHHHHHHHHHHH
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFG------------ESEANVREIFDKAR 521 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~----~~g------------~~e~~i~~lf~~a~ 521 (757)
|+.+..-++|+||||+|||+|+..++... +.+.+.++...-... ..| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55666669999999999999999998654 455666665432211 111 11222333333444
Q ss_pred hCCCeEEEEecccchhc
Q 004384 522 QSAPCVLFFDELDSIAT 538 (757)
Q Consensus 522 ~~~p~il~iDEid~l~~ 538 (757)
...|.++++|++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 66789999999999874
No 260
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.70 E-value=0.00011 Score=78.51 Aligned_cols=115 Identities=21% Similarity=0.380 Sum_probs=64.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhhh----ccc-----------hhHHHHHHHHHH-HH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMSK----LAG-----------ESESNLRKAFEE-AE 248 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~~----~~g-----------~~~~~l~~vf~~-a~ 248 (757)
|++++..++|+||||+|||+|+..++... +..+++++....... ..+ .....+...+.. ..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 46778889999999999999999887654 456666665321110 000 111222233332 23
Q ss_pred hcCCeEEEEcccccccCCCCCCc--hH----HHHHHHHHHHHHhhcccCCCeEEEEEecC
Q 004384 249 KNAPSIIFIDEIDSIAPKREKTH--GE----VERRIVSQLLTLMDGLKSRAHVIVIGATN 302 (757)
Q Consensus 249 ~~~p~il~iDEid~l~~~~~~~~--~~----~~~~~~~~Ll~~l~~~~~~~~v~vI~atn 302 (757)
...+.+||||.+..+.+...... ++ ...+.+.+++..+..+....++.||.+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 45689999999999875322110 11 22233444444444433444556665544
No 261
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.68 E-value=3.7e-05 Score=80.18 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=27.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+++++.+.|+||+|||||||+++|++.+.
T Consensus 75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 4567899999999999999999999998763
No 262
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.68 E-value=8.9e-05 Score=79.36 Aligned_cols=117 Identities=22% Similarity=0.286 Sum_probs=68.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccccc----cC------------chhHHHHHHHHHHH
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTMW----FG------------ESEANVREIFDKAR 521 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~~----~g------------~~e~~i~~lf~~a~ 521 (757)
|+++..-++|+||||+|||++|..+|... +.+.+.++...-.... .| ..+..+..+.+..+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666669999999999999999888764 4566666654322111 11 11222223333344
Q ss_pred hCCCeEEEEecccchhcccCCCC--CCC-CcchHHHHHHHHHhhcCCCCCCeEEEEeeC
Q 004384 522 QSAPCVLFFDELDSIATQRGSSV--GDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 577 (757)
Q Consensus 522 ~~~p~il~iDEid~l~~~r~~~~--~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT 577 (757)
...+.+||||.+..+.+...... ++. .+...+.+.+++..|..+....++.||++.
T Consensus 150 ~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred cCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 56789999999999975321110 000 012335667777777654444455555553
No 263
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=97.67 E-value=0.00054 Score=67.07 Aligned_cols=132 Identities=10% Similarity=0.084 Sum_probs=84.3
Q ss_pred CCCeEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCC---CCCcEEEec--ccc--cc-cc
Q 004384 8 RGDTILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDV---KYGKRVHIL--PID--DT-IE 79 (757)
Q Consensus 8 ~g~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~---~~~~~v~~~--~~~--~~-~~ 79 (757)
.+..|.+..+.....|+.+.|++.+++|.|.++..+|+|+++.+||.|.|+++... .....+.+. -+. .. ..
T Consensus 35 ~~~~v~v~~~~~~~fVft~~~~~~i~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~ 114 (211)
T 1qcs_A 35 SGQHVIVRTSPNHKYIFTLRTHPSVVPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSN 114 (211)
T ss_dssp TTCEEEEEEETTEEEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCC
T ss_pred CCceEEEEecCCCeEEEEEecCCCCCCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCc
Confidence 34457774223357899999999999999999999999999999999999998421 112223332 121 11 12
Q ss_pred CcchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEec-----------------CCceEEECCCceEEecC
Q 004384 80 GVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD-----------------PGEYCVVAPDTEIFCEG 141 (757)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~-----------------~~~~~~~~~~t~~~~~~ 141 (757)
.+..+.+...+.+.|. ..++.+|+.+.+.-.+..+.+.|.+++ +...++++++|.+.+..
T Consensus 115 ~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~v~~~d~~~~~~~~~~~~~~~~~~GiL~~~T~i~F~k 191 (211)
T 1qcs_A 115 PYDTDKMAAEFIQQFN--NQAFSVGQQLVFSFNDKLFGLLVKDIEAMDPSILKGEPASGKRQKIEVGLVVGNSQVAFEK 191 (211)
T ss_dssp EEEHHHHHHHHHHHHT--TCEEETTCEEEEEETTEEEEEEEEEEEECCCCTTC-------CCBCSEEECCTTCEEEEEE
T ss_pred ccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEeEEEEecccccccCcccccCCCcceeEEcCCcEEEEEE
Confidence 2433434444445553 346889999877544334556666631 12468889999876543
No 264
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.66 E-value=5.4e-05 Score=80.09 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---------CCeEEEEechhh---------hhhc-------------c--c
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---------GAFFFCINGPEI---------MSKL-------------A--G 234 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---------~~~~~~v~~~~l---------~~~~-------------~--g 234 (757)
|++++..++|+||||+|||+|+..++... +...++++.... ...+ . .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 67888999999999999999999998764 455666665431 0000 0 0
Q ss_pred hhH---HHHHHHHHHHHh-cCCeEEEEcccccccC
Q 004384 235 ESE---SNLRKAFEEAEK-NAPSIIFIDEIDSIAP 265 (757)
Q Consensus 235 ~~~---~~l~~vf~~a~~-~~p~il~iDEid~l~~ 265 (757)
..+ ..+..+...... ..+.+++||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 122233334444 6789999999998864
No 265
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.65 E-value=4.4e-05 Score=78.06 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=27.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4567888999999999999999999998764
No 266
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.63 E-value=7.1e-05 Score=75.30 Aligned_cols=31 Identities=19% Similarity=0.310 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+.+++.+.|+||+|||||||+++|++.+
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456788999999999999999999999875
No 267
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.63 E-value=2.2e-05 Score=81.05 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=27.0
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3457788999999999999999999998763
No 268
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.63 E-value=8.5e-05 Score=75.84 Aligned_cols=30 Identities=33% Similarity=0.629 Sum_probs=26.6
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+. +..+.|.||+|||||||+++|++.+
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 34567 8889999999999999999999876
No 269
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.62 E-value=0.00011 Score=75.42 Aligned_cols=30 Identities=30% Similarity=0.566 Sum_probs=26.7
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.+++.+.|+||+|||||||+++|++..
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 456788899999999999999999999963
No 270
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.60 E-value=5.8e-05 Score=75.29 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=27.4
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEe
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVK 497 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~ 497 (757)
++.+..-++|+||||+|||||++.++... +.+.+.+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45555568999999999999999999653 34444443
No 271
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.55 E-value=6.2e-05 Score=80.32 Aligned_cols=72 Identities=25% Similarity=0.440 Sum_probs=47.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC----CeEEEEech-hhh---------hhccchhHHHHHHHHHHHHhcCCeEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EIM---------SKLAGESESNLRKAFEEAEKNAPSII 255 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~----~~~~~v~~~-~l~---------~~~~g~~~~~l~~vf~~a~~~~p~il 255 (757)
.++..++|+||+||||||+++++++.++ ..++.+..+ ++. ....+.....+...+..+..+.|.+|
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvi 200 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDII 200 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEE
Confidence 3456799999999999999999998763 334333221 110 00111111234557788888999999
Q ss_pred EEcccc
Q 004384 256 FIDEID 261 (757)
Q Consensus 256 ~iDEid 261 (757)
++||+-
T Consensus 201 llDEp~ 206 (356)
T 3jvv_A 201 LVGEMR 206 (356)
T ss_dssp EESCCC
T ss_pred ecCCCC
Confidence 999973
No 272
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.55 E-value=0.00017 Score=74.48 Aligned_cols=78 Identities=21% Similarity=0.327 Sum_probs=49.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh-----CCeEEEEechhhhh----hccc-----------hhHHHH-HHHHHH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET-----GAFFFCINGPEIMS----KLAG-----------ESESNL-RKAFEE 246 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l-----~~~~~~v~~~~l~~----~~~g-----------~~~~~l-~~vf~~ 246 (757)
|+.++ .++|+||||||||||+..++... +...+++++.+-.. ...| .....+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 46777 79999999999999987765443 56677777643211 0001 111222 222222
Q ss_pred ---HHhcCCeEEEEcccccccCC
Q 004384 247 ---AEKNAPSIIFIDEIDSIAPK 266 (757)
Q Consensus 247 ---a~~~~p~il~iDEid~l~~~ 266 (757)
.....|.++++|-+..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 24567999999999999753
No 273
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.55 E-value=0.00018 Score=76.70 Aligned_cols=78 Identities=22% Similarity=0.416 Sum_probs=51.1
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh----hccc-----------hhHHHHHHHHHH-HH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS----KLAG-----------ESESNLRKAFEE-AE 248 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~----~~~g-----------~~~~~l~~vf~~-a~ 248 (757)
|++++..++|+|+||+|||||+..++... +..+++++...... ...+ .....+..++.. ..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 46788889999999999999999988654 45666676532111 0000 112223333332 23
Q ss_pred hcCCeEEEEcccccccC
Q 004384 249 KNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 249 ~~~p~il~iDEid~l~~ 265 (757)
...+.+++||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 46789999999998875
No 274
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.54 E-value=5.4e-05 Score=75.43 Aligned_cols=79 Identities=24% Similarity=0.232 Sum_probs=49.4
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhC---------CceEEEeCcccccc--------ccCc---------------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPELLTM--------WFGE--------------- 508 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~---------~~~i~v~~~~l~~~--------~~g~--------------- 508 (757)
++.+..-+.|+||||+|||||++.+++... ...+.+.+.+.... ..+-
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 100 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhcEEEEecC
Confidence 455555699999999999999999998542 23566665442110 0000
Q ss_pred h----hHHHHHHHHHHH-----hCCCeEEEEecccchhcc
Q 004384 509 S----EANVREIFDKAR-----QSAPCVLFFDELDSIATQ 539 (757)
Q Consensus 509 ~----e~~i~~lf~~a~-----~~~p~il~iDEid~l~~~ 539 (757)
. ...+..+..... ...|.++++||.......
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhcc
Confidence 0 011233333444 567899999999887653
No 275
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.50 E-value=0.00059 Score=72.56 Aligned_cols=157 Identities=13% Similarity=0.073 Sum_probs=96.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhC---C-ceEEEeCccccccccCchhHHHHHHHHHHHh----CCCeEEEEecccc-
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQ---A-NFISVKGPELLTMWFGESEANVREIFDKARQ----SAPCVLFFDELDS- 535 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~---~-~~i~v~~~~l~~~~~g~~e~~i~~lf~~a~~----~~p~il~iDEid~- 535 (757)
....|||||+|.||++.++.++..+. . ++..+. +-+ ...++.+.+.+.. ....|+++||++.
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~k 88 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-------IDP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENG 88 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-------CCT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-------ecC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCC
Confidence 34699999999999999999988642 1 221111 111 2345566655543 3457999999988
Q ss_pred hhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC-----CCCCCccccCCCccceEEEecCCCHHHHHHH
Q 004384 536 IATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR-----PDIIDPALLRPGRLDQLIYIPLPDEDSRHQI 610 (757)
Q Consensus 536 l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~-----~~~ld~allrpgRf~~~i~~~~p~~~~r~~I 610 (757)
+. ....+.|+..++... .+.++|+++++. ...+-+++.. |. .++.|.+++..+....
T Consensus 89 l~--------------~~~~~aLl~~le~p~-~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 89 PN--------------AAINEQLLTLTGLLH-DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp CC--------------TTHHHHHHHHHTTCB-TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHH
T ss_pred CC--------------hHHHHHHHHHHhcCC-CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHH
Confidence 52 123566777777543 345555555442 1234456665 65 4889999999999999
Q ss_pred HHHhhccCCCCCcc-CHHHHHHHcCCCCHHHHHHHHHHHH
Q 004384 611 FKACLRKSPVSKDV-DLRALAKYTQGFSGADITEICQRAC 649 (757)
Q Consensus 611 l~~~l~~~~~~~~~-d~~~la~~~~g~sg~di~~~~~~a~ 649 (757)
++..+++.++.-+. .+..+++.+.| +-+++.+.+...+
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~ 189 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLS 189 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 99888877654222 24455555543 4444444444433
No 276
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=97.50 E-value=0.0014 Score=63.00 Aligned_cols=124 Identities=10% Similarity=-0.003 Sum_probs=78.1
Q ss_pred eEEEEeCCCceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCC------CCCcEEEec--ccc--cc-cc
Q 004384 11 TILIKGKKRKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDV------KYGKRVHIL--PID--DT-IE 79 (757)
Q Consensus 11 ~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~------~~~~~v~~~--~~~--~~-~~ 79 (757)
.|.| . ...|+.+.|++.+++|.|.+|..+|+|+++.+||.|.|+++... .....+.+. -+. .. ..
T Consensus 36 ~v~v--~--~~fVft~~~~~~i~~G~I~ls~~QR~wa~lsl~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~ 111 (189)
T 1cr5_A 36 YIII--D--NLFVFTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVST 111 (189)
T ss_dssp EEEE--T--TTEEEEEEECTTSCTTEEEECHHHHHHHTCCTTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------
T ss_pred eEEE--c--CcEEEEEecCCCCCCCEEecCHHHHHhhcccCCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCC
Confidence 5666 2 25788889999999999999999999999999999999998311 112223332 111 11 12
Q ss_pred CcchhhHHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEec----------------CCceEEECCCceEEec
Q 004384 80 GVTGNLFDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETD----------------PGEYCVVAPDTEIFCE 140 (757)
Q Consensus 80 ~~~~~~~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~----------------~~~~~~~~~~t~~~~~ 140 (757)
.+..+.+...+.+.|. ..++.+|+.+.+.-.+..+.+.|.++. +...++++++|.+.+.
T Consensus 112 ~~D~dela~~f~~~F~--~Qift~gQ~l~f~~~g~~l~l~V~~i~~~d~~~~~~~~~~~~~~~~~GiL~~~T~i~F~ 186 (189)
T 1cr5_A 112 VFDQDELAKQFVRCYE--SQIFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDIEPTSAVATGIETKGILTKQTQINFF 186 (189)
T ss_dssp CCCHHHHHHHHHHHHT--TCEECTTCEEEEEETTEEEEEEEEEEEEECTTSSSCSSCCBCSTTCCEECCTTCEEEEE
T ss_pred ccCHHHHHHHHHHHHc--CCCCCCCCEEEEEECCcEEEEEEEEEEEeccccccccCcCCCCccceEEEcCCcEEEEE
Confidence 2443444444455553 346889999877544334455665542 1236778888876543
No 277
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.48 E-value=0.0002 Score=71.61 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=27.5
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.+++.+.|+||+|||||||++++++.+.
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4567889999999999999999999998764
No 278
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.48 E-value=0.00027 Score=67.26 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEech
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCINGP 226 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~ 226 (757)
+..|+|+|+|||||||+++.|+..++..++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 35699999999999999999999999887776543
No 279
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.47 E-value=0.00025 Score=73.21 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.0
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.++..++|+||||||||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 67788899999999999999999998754
No 280
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.46 E-value=0.00012 Score=78.11 Aligned_cols=117 Identities=23% Similarity=0.362 Sum_probs=65.9
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccccc----ccC-----------chhHHHHHHHH-HHH
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLTM----WFG-----------ESEANVREIFD-KAR 521 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~~----~~g-----------~~e~~i~~lf~-~a~ 521 (757)
|+++..-++|+||||+|||+||..+|... +.+.+.++...-... ..| .+...+..+.. ..+
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56666679999999999999999998764 456777776432211 011 11122333333 334
Q ss_pred hCCCeEEEEecccchhcccCCC--CCCC-CcchHHHHHHHHHhhcCCCCCCeEEEEeeC
Q 004384 522 QSAPCVLFFDELDSIATQRGSS--VGDA-GGAADRVLNQLLTEMDGMSAKKTVFIIGAT 577 (757)
Q Consensus 522 ~~~p~il~iDEid~l~~~r~~~--~~~~-~~~~~~~~~~ll~~ld~~~~~~~v~vi~tT 577 (757)
...+.+++||.+..+....... .++. .+...+.+.+++..|..+....++.||++.
T Consensus 139 ~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~n 197 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 197 (356)
T ss_dssp HTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5678999999999987532100 0010 012234556666666544333345555543
No 281
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.44 E-value=9.4e-05 Score=72.19 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=29.6
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.+.++..|+|+|||||||||+++.|++.++..++..
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445678899999999999999999999999877643
No 282
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.43 E-value=8.8e-05 Score=83.69 Aligned_cols=29 Identities=38% Similarity=0.475 Sum_probs=26.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
.+.+++.+.|+||+|||||||+++|++.+
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999999999875
No 283
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.42 E-value=0.00032 Score=73.01 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=27.4
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+++.++.-++|.||||+|||||++.+++.+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 477889999999999999999999999875
No 284
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.42 E-value=0.0017 Score=61.38 Aligned_cols=123 Identities=17% Similarity=0.250 Sum_probs=85.5
Q ss_pred CeEEEEeCCC-ceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccCcchhhHHH
Q 004384 10 DTILIKGKKR-KDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDA 88 (757)
Q Consensus 10 ~~v~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 88 (757)
=..+|+..+. +.+.|-|.- -.-+.|.|.|+.-++++++++.||.|+|+.+ .+|.++.|.+.|.+...-.++ ...+
T Consensus 62 m~F~l~n~~~~r~th~GVlE-FsA~EG~i~lP~wmm~~L~l~~gd~V~v~~~-~LPkgt~vklqP~~~~Fl~i~--npKa 137 (190)
T 2yuj_A 62 MLFKLTNKNSDRMTHCGVLE-FVADEGICYLPHWMMQNLLLEEGGLVQVESV-NLQVATYSKFQPQSPDFLDIT--NPKA 137 (190)
T ss_dssp CEEEEEETTTTEEEEEEEEE-CCCBTTBEECCSHHHHHHTCCTTEEEEEEEE-CCCCCSEEEEEESSHHHHHSS--CHHH
T ss_pred eEEEEecCCCCceEEEEEEE-EecCCCeEEeCHHHHHhcCCCCCCEEEEEEe-ecCCCcEEEEEECCccccccc--cHHH
Confidence 3456665432 335554442 3456799999999999999999999999985 699999999999753221221 2233
Q ss_pred HhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCc-eEEECCCceE
Q 004384 89 FLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGE-YCVVAPDTEI 137 (757)
Q Consensus 89 ~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~-~~~~~~~t~~ 137 (757)
.|...+. ....+..||+|.+..+...+.|+|.++.|.. .+++..+-++
T Consensus 138 vLE~~Lr-nfstLT~Gd~I~I~~~~~~y~l~V~e~kP~~aV~IidTDl~v 186 (190)
T 2yuj_A 138 VLENALR-NFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNV 186 (190)
T ss_dssp HHHHHHT-TCCEECTTCEEEEESSSCEEEEEEEEESSSSSEECSSCCCEE
T ss_pred HHHHHHh-cCcccccCCEEEEEeCCEEEEEEEEEEcCCCeEEEEeCCEEE
Confidence 4444443 2335899999999887788899999999984 4545444333
No 285
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.40 E-value=9e-05 Score=71.59 Aligned_cols=41 Identities=34% Similarity=0.402 Sum_probs=33.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 228 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l 228 (757)
.+.++..++|+|||||||||+++.|++..+...+.+++.++
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 35678889999999999999999999987666677776544
No 286
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.40 E-value=0.00019 Score=82.34 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||++++++.+.
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 34678899999999999999999999998764
No 287
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.37 E-value=0.00014 Score=78.36 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=52.3
Q ss_pred hhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC----CeEEEEech-hhh-h---hccch-----hHHHHHHHHHH
Q 004384 181 PQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGP-EIM-S---KLAGE-----SESNLRKAFEE 246 (757)
Q Consensus 181 ~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~----~~~~~v~~~-~l~-~---~~~g~-----~~~~l~~vf~~ 246 (757)
|..++++.+.++..++|+||+||||||+++++++.+. ..++.+..+ ++. . .+..+ ....+...+..
T Consensus 125 ~~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~ 204 (372)
T 2ewv_A 125 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRA 204 (372)
T ss_dssp CSSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHH
T ss_pred CHHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHH
Confidence 3455666677888899999999999999999998753 333333321 100 0 00111 11223556677
Q ss_pred HHhcCCeEEEEcccc
Q 004384 247 AEKNAPSIIFIDEID 261 (757)
Q Consensus 247 a~~~~p~il~iDEid 261 (757)
+....|.++++||+-
T Consensus 205 ~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 205 ALREDPDVIFVGEMR 219 (372)
T ss_dssp HTTSCCSEEEESCCC
T ss_pred HhhhCcCEEEECCCC
Confidence 777889999999973
No 288
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.36 E-value=0.00013 Score=83.39 Aligned_cols=32 Identities=13% Similarity=0.312 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||++++++.+.
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 34568899999999999999999999998764
No 289
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.0025 Score=61.05 Aligned_cols=124 Identities=15% Similarity=0.267 Sum_probs=87.8
Q ss_pred CCeEEEEeCC-CceEEEEEEcCCCCCCCeEEecHhhhhhccccCCCeeEEEecCCCCCCcEEEeccccccccCcc--hhh
Q 004384 9 GDTILIKGKK-RKDTICIALADDTCEQPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVT--GNL 85 (757)
Q Consensus 9 g~~v~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~r~~~~~~~g~~v~v~~~~~~~~~~~v~~~~~~~~~~~~~--~~~ 85 (757)
.=..+|+... .+.+.|-|.- -.-+.|.|.++.-+++++++..||.|+|+-+ .+|.++.|.+.|.+.....++ .++
T Consensus 66 Pm~F~l~n~~~~~~th~GVlE-F~A~EG~v~lP~wmm~~L~l~~gd~V~i~~~-~LPkgt~vklqP~~~~Fldi~npKav 143 (208)
T 1zc1_A 66 PMLFKLTANETGRVTHGGVLE-FIAEEGRVYLPQWMMETLGIQPGSLLQISST-DVPLGQFVKLEPQSVDFLDISDPKAV 143 (208)
T ss_dssp SCCEEEECTTTCCEEEEEEEE-ECCSSCEEEECHHHHHHHTCCTTCEEEEEEE-ECCCCSEEEEECCHHHHHTSSCHHHH
T ss_pred CEEEEEEeCCCCCEEEEEEEE-EEcCCCeEEcCHHHHHhcCCCCCCEEEEEEe-EcCCCCEEEEeECccccccccCHHHH
Confidence 3345666533 2345555542 2346799999999999999999999999984 699999999999653222222 234
Q ss_pred HHHHhhHhhhhcCccccCCcEEEEecCceeEEEEEEEecCCc----eEEECCCceEEe
Q 004384 86 FDAFLRPYFTEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGE----YCVVAPDTEIFC 139 (757)
Q Consensus 86 ~~~~l~~~~~~~~~~v~~g~~~~~~~~~~~~~f~v~~~~~~~----~~~~~~~t~~~~ 139 (757)
++..|+. ...+..||++.+..+.....|.|.++.|.. .+++..+-++.+
T Consensus 144 LE~~LRn-----fstLT~Gd~I~i~~~~~~y~l~V~e~kP~~~~~aV~IidTDleVDf 196 (208)
T 1zc1_A 144 LENVLRN-----FSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDF 196 (208)
T ss_dssp HHHHHHH-----CSCEESSSEEEEEETTEEEEEEEEEEECSSTTCEECCSSSCSEEEE
T ss_pred HHHHhhc-----CccccCCCEEEEEeCCEEEEEEEEEEcCCCCCceEEEEeCceEEEe
Confidence 4445543 346899999999877788899999999984 566655555543
No 290
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.32 E-value=0.0002 Score=77.72 Aligned_cols=118 Identities=19% Similarity=0.129 Sum_probs=65.7
Q ss_pred eEEEEcCCCCCHHHHHHHH-HHHhCCeEEEEech-----hhhhhccch--hHHHHHHHHHHHHhcCCeEEEEcccccccC
Q 004384 194 GILLYGPPGSGKTLIARAV-ANETGAFFFCINGP-----EIMSKLAGE--SESNLRKAFEEAEKNAPSIIFIDEIDSIAP 265 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~l-a~~l~~~~~~v~~~-----~l~~~~~g~--~~~~l~~vf~~a~~~~p~il~iDEid~l~~ 265 (757)
+|||.|+||| ||+|++++ +..++...+ +.+. .+.....+. ..-.-+ .+..|. ..++|+||++.+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~~tG~~~~~G-~l~LAd---gGvl~lDEIn~~~~ 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKEDRGWALRAG-AAVLAD---GGILAVDHLEGAPE 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEESSSEEEEEC-HHHHTT---TSEEEEECCTTCCH
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEcCCCcccCCC-eeEEcC---CCeeehHhhhhCCH
Confidence 7999999999 99999999 776655433 2221 111110000 000001 111222 35999999987643
Q ss_pred CCCCCchHHHHHHHHHHHHHhhcc-------cCCCeEEEEEecCCCC-----------CCCHHhhccCCcceEE-EeCCC
Q 004384 266 KREKTHGEVERRIVSQLLTLMDGL-------KSRAHVIVIGATNRPN-----------SIDPALRRFGRFDREI-DIGVP 326 (757)
Q Consensus 266 ~~~~~~~~~~~~~~~~Ll~~l~~~-------~~~~~v~vI~atn~~~-----------~ld~~l~r~~rf~~~i-~i~~p 326 (757)
.....|+..|+.- .-..++.||+|+|+.+ .+++++.. ||+..+ .+..|
T Consensus 315 -----------~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~p 381 (506)
T 3f8t_A 315 -----------PHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDP 381 (506)
T ss_dssp -----------HHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC--
T ss_pred -----------HHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCC
Confidence 2345566666521 1124678999999865 67778877 887544 34555
Q ss_pred CHHH
Q 004384 327 DEVG 330 (757)
Q Consensus 327 ~~~~ 330 (757)
+.+.
T Consensus 382 d~e~ 385 (506)
T 3f8t_A 382 RPGE 385 (506)
T ss_dssp ----
T ss_pred ChhH
Confidence 5443
No 291
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.32 E-value=0.00035 Score=79.97 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=27.4
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+++++.+.|+||+|||||||++++++.+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3456788999999999999999999999875
No 292
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.30 E-value=0.0015 Score=65.61 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=29.1
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEec
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 225 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~ 225 (757)
|+.++..++|+||||+|||||+..++... +...+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 67888899999999999999988776543 444555543
No 293
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.29 E-value=0.0003 Score=71.76 Aligned_cols=78 Identities=18% Similarity=0.242 Sum_probs=48.4
Q ss_pred hhhcccCCCCceeeecCCCCChhHHHHHHHHHhC---CceEEEeCcccc-----------ccccCchhHHHHHHHHHHHh
Q 004384 457 FEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISVKGPELL-----------TMWFGESEANVREIFDKARQ 522 (757)
Q Consensus 457 ~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~---~~~i~v~~~~l~-----------~~~~g~~e~~i~~lf~~a~~ 522 (757)
++++.+.+..-++|.||+|+||||+++++++... ..-+.+.+..+- ...+|......+..+..+-.
T Consensus 17 l~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 17 VLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR 96 (261)
T ss_dssp HHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHH
T ss_pred HHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHh
Confidence 3444444444589999999999999999998753 223333332211 00111122344566666666
Q ss_pred CCCeEEEEeccc
Q 004384 523 SAPCVLFFDELD 534 (757)
Q Consensus 523 ~~p~il~iDEid 534 (757)
..|.++++||.-
T Consensus 97 ~~p~illlDEp~ 108 (261)
T 2eyu_A 97 EDPDVIFVGEMR 108 (261)
T ss_dssp HCCSEEEESCCC
T ss_pred hCCCEEEeCCCC
Confidence 789999999973
No 294
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.29 E-value=0.00029 Score=83.79 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=24.3
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
+.+.+++.++|+||+|+||||+++.++..
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34556788999999999999999998753
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.28 E-value=0.00027 Score=75.36 Aligned_cols=40 Identities=28% Similarity=0.361 Sum_probs=31.3
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHhC---------CceEEEeCcc
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISVKGPE 500 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~~---------~~~i~v~~~~ 500 (757)
++.+..-+.|+||||+|||||++.++.... ...+.+++.+
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 555556699999999999999999999862 3447777654
No 296
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.27 E-value=0.00024 Score=81.35 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||++++++.+.
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 34568899999999999999999999998764
No 297
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.27 E-value=0.00039 Score=73.98 Aligned_cols=115 Identities=18% Similarity=0.206 Sum_probs=66.1
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---------CCceEEEeCccccc--------cccCc---------------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFGE--------------- 508 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~~--------~~~g~--------------- 508 (757)
|+++..-++|+||||+|||+++..+|... +.+.++++....+. ...|.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 55555568999999999999999999873 34566666554211 00010
Q ss_pred -hh---HHHHHHHHHHHh--CCCeEEEEecccchhcccCCCCCCCCcchH--HHHHHHHHhhcCCCCCCeEEEEeeCC
Q 004384 509 -SE---ANVREIFDKARQ--SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGATN 578 (757)
Q Consensus 509 -~e---~~i~~lf~~a~~--~~p~il~iDEid~l~~~r~~~~~~~~~~~~--~~~~~ll~~ld~~~~~~~v~vi~tTn 578 (757)
.+ ..+..+....+. ..+.++++|.+..+....-.+. +...+ ..+.+++..|..+....++.||.++.
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq 272 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR---GELAERQQKLAQMLSRLQKISEEYNVAVFVTNQ 272 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG---GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEee
Confidence 11 112233444555 6789999999999875321100 11122 23566666665544434455555543
No 298
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.27 E-value=0.00024 Score=75.02 Aligned_cols=113 Identities=16% Similarity=0.229 Sum_probs=67.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---------CCceEEEeCccccc--------cccC----------------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLT--------MWFG---------------- 507 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~~--------~~~g---------------- 507 (757)
|+++..-++|+||||+|||+++..+|... +.+.+.++...-.. ...|
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 56666669999999999999999999875 44667776654210 0001
Q ss_pred chh---HHHHHHHHHHHh-CCCeEEEEecccchhcccCCCCCCCCcchH--HHHHHHHHhhcCCCCCCeEEEEee
Q 004384 508 ESE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAAD--RVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 508 ~~e---~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~--~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
..+ ..+..+....+. ..+.++++|.+..+......+. +...+ ..+.+++..|..+....++.||.+
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~ 254 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR---ENLAVRQQKLNKHLHQLTRLAEVYDIAVIIT 254 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT---TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc---ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 011 123344445555 6789999999999875321110 11222 346666666665443334455554
No 299
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.27 E-value=3.3e-05 Score=82.07 Aligned_cols=44 Identities=32% Similarity=0.539 Sum_probs=30.6
Q ss_pred hhhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhCC--ceEEEeCc
Q 004384 456 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGP 499 (757)
Q Consensus 456 ~~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~~--~~i~v~~~ 499 (757)
.++++++....| +.|.||+|||||||.+++|+.... .-+.+++.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~ 66 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGK 66 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCE
Confidence 344445555555 889999999999999999997532 23444443
No 300
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.25 E-value=2e-05 Score=80.99 Aligned_cols=35 Identities=20% Similarity=0.353 Sum_probs=26.9
Q ss_pred hhhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhC
Q 004384 456 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ 490 (757)
Q Consensus 456 ~~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~ 490 (757)
.++++++....| +.|.||||+|||||++++++...
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 344445554445 89999999999999999998753
No 301
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.25 E-value=0.00055 Score=70.71 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=64.5
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh-----CCceEEEeCcccccc----ccCc-----------hhHHH-HHHHHH
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISVKGPELLTM----WFGE-----------SEANV-REIFDK 519 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~-----~~~~i~v~~~~l~~~----~~g~-----------~e~~i-~~lf~~ 519 (757)
|+.+. -++++||||+|||+|+-.++... +...+.+++.+-... -.|- +...+ -.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 45555 58999999999999988776543 456777776543211 0110 11111 122222
Q ss_pred ---HHhCCCeEEEEecccchhcccCCCC--CCC---CcchHHHHHHHHHhhcCCCCCCeEEEEee
Q 004384 520 ---ARQSAPCVLFFDELDSIATQRGSSV--GDA---GGAADRVLNQLLTEMDGMSAKKTVFIIGA 576 (757)
Q Consensus 520 ---a~~~~p~il~iDEid~l~~~r~~~~--~~~---~~~~~~~~~~ll~~ld~~~~~~~v~vi~t 576 (757)
.+...|.++++|=|..+.+.-.... ++. +....|.++++|..|..+....++.+|.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~t 168 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAI 168 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 3556799999999999975321110 110 01345677787777655444444444443
No 302
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.24 E-value=2.3e-05 Score=80.27 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=26.2
Q ss_pred hhhhcccCCCCc--eeeecCCCCChhHHHHHHHHHh
Q 004384 456 KFEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANEC 489 (757)
Q Consensus 456 ~~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~ 489 (757)
.++++++....| +.|.||||+|||||++++++..
T Consensus 26 vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344444444444 8899999999999999999865
No 303
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.23 E-value=0.00042 Score=79.32 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||++++++.+.
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 34578899999999999999999999998764
No 304
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.22 E-value=0.00033 Score=73.88 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHH
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
|++++.-++|+||||+|||+|+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5788888999999999999999999875
No 305
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.21 E-value=0.00029 Score=76.26 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=65.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---------CCceEEEeCcccccc--------ccCc---------------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------QANFISVKGPELLTM--------WFGE--------------- 508 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---------~~~~i~v~~~~l~~~--------~~g~--------------- 508 (757)
|+.+..-++|+||||||||+|++.++-.. +...+++++.+.... .+|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666669999999999999999776432 234677776542110 0110
Q ss_pred -h---hHHHHHHHHHHHhCCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 509 -S---EANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 509 -~---e~~i~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
. ...+..+........|.++++|++-.+....-.+.++ -....+.+.+++..|..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~-l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGE-LSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CC-HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccc-hHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0 1122233344445678999999998887532111000 01113344556655555443345566666554
No 306
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.19 E-value=0.00024 Score=66.47 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+.++..+.|.||+|+|||||++++++.+
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4567888999999999999999999999987
No 307
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.19 E-value=0.00053 Score=65.20 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=29.6
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEEeCc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 499 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~ 499 (757)
.-++|.|+||+||||+++.|+..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 3489999999999999999999999888876543
No 308
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.19 E-value=0.0048 Score=70.65 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=37.0
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHH
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 214 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~ 214 (757)
...++|-+..+++|.+.+... -...+.|+|+||+|+||||||+.++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 345899999999998887531 02345799999999999999998864
No 309
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00029 Score=66.77 Aligned_cols=30 Identities=37% Similarity=0.701 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
+..|+|+|||||||||+++.|++.++..++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456999999999999999999999987544
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.14 E-value=0.00028 Score=68.77 Aligned_cols=33 Identities=33% Similarity=0.479 Sum_probs=28.6
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
+...++|.|||||||||+++.||..++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445699999999999999999999999887644
No 311
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.14 E-value=0.00055 Score=66.10 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred eeeecCCCCChhHHHHHHHHHh--------------------CCceEEEeCcc-------------------ccccccCc
Q 004384 468 VLFYGPPGCGKTLLAKAIANEC--------------------QANFISVKGPE-------------------LLTMWFGE 508 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~--------------------~~~~i~v~~~~-------------------l~~~~~g~ 508 (757)
+.|.||||+||||+++.+++.+ ...++...... ...+|...
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~~~~Gi~~~g~~~~~~~~~~~~ig~~~~~~~g~~~~l~~~~~~~~~~~~~~~v~~~~~~ 83 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVD 83 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEEC
T ss_pred EEEECCCCChHHHHHHHHHhhcccCCEEEcCEecchhHhhhceEEEEEEecccceehhhcccccCCccccccccceEEEc
Q ss_pred hhHHHHHHHHHHHh------CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEee-C--CC
Q 004384 509 SEANVREIFDKARQ------SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGA-T--NR 579 (757)
Q Consensus 509 ~e~~i~~lf~~a~~------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~t-T--n~ 579 (757)
...--+..+..... ..|.++++||++.+ +......+..+...++.... +|++| + .+
T Consensus 84 ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~-----------~~~~~~~~~~l~~~l~~~~~----~ilgti~vsh~ 148 (189)
T 2i3b_A 84 LTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKM-----------ELFSQLFIQAVRQTLSTPGT----IILGTIPVPKG 148 (189)
T ss_dssp HHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTT-----------TTTCSHHHHHHHHHHHCSSC----CEEEECCCCCS
T ss_pred chHHHHHHHHHHhhhhHhhccCCCEEEEeCCCcc-----------ccccHHHHHHHHHHHhCCCc----EEEEEeecCCC
Q ss_pred C--CCCCccccCCCccceEEEecCCCHHHHHHHHHHhhcc
Q 004384 580 P--DIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRK 617 (757)
Q Consensus 580 ~--~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 617 (757)
. ..+|.-..+ .--+++.+..=+.+...+-+-..+++
T Consensus 149 ~~~~~vd~i~~~--~~~~i~~~~~~nr~~~~~~i~~~~~~ 186 (189)
T 2i3b_A 149 KPLALVEEIRNR--KDVKVFNVTKENRNHLLPDIVTCVQS 186 (189)
T ss_dssp SCCTTHHHHHTT--CCSEEEECCSSSGGGHHHHHHHHHTT
T ss_pred CchHHHHHHeec--CCcEEEEeChHhHHHHHHHHHHHHHH
No 312
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.13 E-value=0.00012 Score=77.48 Aligned_cols=73 Identities=18% Similarity=0.254 Sum_probs=50.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechhhhh-----h---ccchhHHHHHHHHHHHHhcCCeEEEEc
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPEIMS-----K---LAGESESNLRKAFEEAEKNAPSIIFID 258 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~~l~~-----~---~~g~~~~~l~~vf~~a~~~~p~il~iD 258 (757)
+.++..++|+||+|||||||++++++.+.. ..+.+++..... . +........+..+..+....|.++++|
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilild 247 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILG 247 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEEC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEc
Confidence 355778999999999999999999998753 345555532111 0 110012345667777888899999999
Q ss_pred ccc
Q 004384 259 EID 261 (757)
Q Consensus 259 Eid 261 (757)
|+.
T Consensus 248 E~~ 250 (330)
T 2pt7_A 248 ELR 250 (330)
T ss_dssp CCC
T ss_pred CCC
Confidence 965
No 313
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.13 E-value=0.00034 Score=67.11 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
+..|+|+|||||||||+++.||..++..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999999877644
No 314
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.11 E-value=0.00085 Score=68.05 Aligned_cols=40 Identities=38% Similarity=0.489 Sum_probs=33.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 228 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l 228 (757)
...+..++|+|+|||||||+++.|+..++..++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3556789999999999999999999999866677776554
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.10 E-value=0.0004 Score=66.95 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
..+..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 456779999999999999999999999876554
No 316
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.09 E-value=0.0041 Score=67.76 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=46.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccc-------------------cccccC-chhHHHHHHHHHHH
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL-------------------LTMWFG-ESEANVREIFDKAR 521 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l-------------------~~~~~g-~~e~~i~~lf~~a~ 521 (757)
+.-+++.|+||+||||++..||..+ +.....+.+... ...+.+ .....++..++.++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4559999999999999999999765 444444443211 000111 22334566777787
Q ss_pred hCCCeEEEEecccc
Q 004384 522 QSAPCVLFFDELDS 535 (757)
Q Consensus 522 ~~~p~il~iDEid~ 535 (757)
...+.++++|..-.
T Consensus 180 ~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 180 SKGVDIIIVDTAGR 193 (443)
T ss_dssp HTTCSEEEEECCCC
T ss_pred hCCCCEEEEECCCc
Confidence 77778999998743
No 317
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.08 E-value=0.00017 Score=82.49 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+++.+.|+||+|+|||||+++|++.+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999875
No 318
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.08 E-value=0.00042 Score=67.58 Aligned_cols=37 Identities=38% Similarity=0.585 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 228 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l 228 (757)
.++..++|+|||||||||+++.|++.++.. .+++.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 457789999999999999999999999764 4455443
No 319
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.08 E-value=0.0007 Score=72.15 Aligned_cols=98 Identities=17% Similarity=0.295 Sum_probs=60.1
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhC----CceEEEeCc-ccc---------ccccCchhHHHHHHHHHHHhCCCeEEEE
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-ELL---------TMWFGESEANVREIFDKARQSAPCVLFF 530 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~----~~~i~v~~~-~l~---------~~~~g~~e~~i~~lf~~a~~~~p~il~i 530 (757)
..-+++.||+|+||||+.+++++... ...+.+..+ ++. ...++.........+..|-...|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 33489999999999999999998753 333333211 111 0112222234556777888889999999
Q ss_pred ecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCC
Q 004384 531 DELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDII 583 (757)
Q Consensus 531 DEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~l 583 (757)
||+-. .+....++..... +..|+.|+...+.+
T Consensus 203 DEp~d----------------~e~~~~~~~~~~~-----G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 203 GEMRD----------------LETIRLALTAAET-----GHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCCS----------------HHHHHHHHHHHHT-----TCEEEEEESCSSHH
T ss_pred CCCCC----------------HHHHHHHHHHHhc-----CCEEEEEEccChHH
Confidence 99731 2334444444321 33578888776644
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.07 E-value=0.0003 Score=67.62 Aligned_cols=33 Identities=36% Similarity=0.516 Sum_probs=27.7
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHH-hCCeEEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANE-TGAFFFC 222 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~-l~~~~~~ 222 (757)
..+..|+|+|+|||||||+++.|+.. ++.+++.
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 45667999999999999999999998 6765543
No 321
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.06 E-value=0.00024 Score=68.59 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=31.3
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
++.-++|.||||+||||+++.|++..+.+.+.+++.++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34458999999999999999999987777777776554
No 322
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.06 E-value=0.00045 Score=67.32 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhh
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI 228 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l 228 (757)
.++..|.|+||+||||||+++.|++.+ |...+.+++.++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 567889999999999999999999988 544446665443
No 323
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.05 E-value=0.00056 Score=77.28 Aligned_cols=28 Identities=32% Similarity=0.455 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+++.+.|+||+|||||||+++|++.+
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999875
No 324
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.00071 Score=77.24 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 193 KGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.|+||+|+|||||+++|++.+
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Confidence 559999999999999999999875
No 325
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.04 E-value=0.00026 Score=68.14 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=17.8
Q ss_pred eeeecCCCCChhHHHHHHHHH
Q 004384 468 VLFYGPPGCGKTLLAKAIANE 488 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~ 488 (757)
.+++||+|+||||++..++..
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999998666654
No 326
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.04 E-value=0.0053 Score=70.34 Aligned_cols=165 Identities=13% Similarity=0.161 Sum_probs=86.5
Q ss_pred ccccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHH-------hCCce--EEEeCcc-
Q 004384 431 EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE-------CQANF--ISVKGPE- 500 (757)
Q Consensus 431 ~~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~-------~~~~~--i~v~~~~- 500 (757)
..++|-+...+.|.+.+...- ...+-++++||+|+|||+||+.++.. ..... +.+...+
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~ 192 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDK 192 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCH
T ss_pred CeecccHHHHHHHHHHHhccc-----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCch
Confidence 346777777777776654210 11234899999999999999998642 11123 3333221
Q ss_pred --ccccc------cC----------chhHHHH-HHHHHHHh-CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHH
Q 004384 501 --LLTMW------FG----------ESEANVR-EIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLT 560 (757)
Q Consensus 501 --l~~~~------~g----------~~e~~i~-~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~ 560 (757)
+.... .+ .....+. .+...... ..|.+|++|+++.. . .+.
T Consensus 193 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~l~ 252 (591)
T 1z6t_A 193 SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----VLK 252 (591)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----HHH
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----HHH
Confidence 11000 01 1111122 22222222 25789999998652 1 122
Q ss_pred hhcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEe---cCCCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCC
Q 004384 561 EMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYI---PLPDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFS 637 (757)
Q Consensus 561 ~ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~---~~p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~s 637 (757)
.+ . .+..||.||..+..... .. .....+ .+.+.++-.++|...+.............+++.+.|+.
T Consensus 253 ~l---~--~~~~ilvTsR~~~~~~~--~~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 253 AF---D--SQCQILLTTRDKSVTDS--VM----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp TT---C--SSCEEEEEESCGGGGTT--CC----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred Hh---c--CCCeEEEECCCcHHHHh--cC----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 22 2 23355566654432211 11 123333 36788899999988875421111234677888888754
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.03 E-value=0.00052 Score=65.18 Aligned_cols=31 Identities=35% Similarity=0.471 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
++..++|+|||||||||+++.|++.++..++
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 4567999999999999999999999876543
No 328
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.02 E-value=9.6e-05 Score=78.55 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=26.2
Q ss_pred hhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhC
Q 004384 457 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ 490 (757)
Q Consensus 457 ~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~ 490 (757)
++++++....| +.|.||+|||||||.+++|+...
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44444444444 88999999999999999998753
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.01 E-value=0.00064 Score=70.06 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=24.1
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC 489 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~ 489 (757)
|+.+..-++|+||||+|||||++.++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555569999999999999999998754
No 330
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.00 E-value=0.0014 Score=72.44 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh----CCeEEEEec
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 225 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l----~~~~~~v~~ 225 (757)
|+.++.-++|.|+||+|||||+..++... +.++..++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 68899999999999999999999988754 445555553
No 331
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.99 E-value=0.00091 Score=79.83 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=22.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHH
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVAN 214 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~ 214 (757)
+..++.++|+||+|+||||++|.++.
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567799999999999999999954
No 332
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.99 E-value=0.00054 Score=73.31 Aligned_cols=34 Identities=35% Similarity=0.669 Sum_probs=26.2
Q ss_pred hhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhC
Q 004384 457 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ 490 (757)
Q Consensus 457 ~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~ 490 (757)
++++++....| +.|.||+|||||||.+++|+...
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34444444444 88999999999999999999753
No 333
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.99 E-value=0.00061 Score=78.20 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=28.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||++++++.+.
T Consensus 364 sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 364 SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 34568899999999999999999999998763
No 334
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.98 E-value=0.00048 Score=66.03 Aligned_cols=32 Identities=19% Similarity=0.270 Sum_probs=28.2
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
...++|.|||||||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34699999999999999999999999887654
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.97 E-value=0.00067 Score=64.75 Aligned_cols=33 Identities=33% Similarity=0.556 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
..+..|+|+|+|||||||+++.|+..++..++.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 345679999999999999999999999877654
No 336
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.95 E-value=0.0013 Score=63.13 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=19.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
+.-++++||+|+||||++..++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999998666544
No 337
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.95 E-value=0.00049 Score=64.93 Aligned_cols=31 Identities=23% Similarity=0.136 Sum_probs=27.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEe
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCIN 224 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~ 224 (757)
.|+|.|+|||||||+++.|+..++..++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998765444
No 338
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.93 E-value=0.00062 Score=64.68 Aligned_cols=29 Identities=38% Similarity=0.577 Sum_probs=26.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
.|+|.|+|||||||+++.||..++..++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999987654
No 339
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.92 E-value=0.00052 Score=66.94 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.++..+.|+||+|||||||+++|++.++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45677899999999999999999999865
No 340
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.92 E-value=0.00046 Score=68.35 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=25.2
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++...
T Consensus 17 sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 17 RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -----CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred ceecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34567788899999999999999999999873
No 341
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.90 E-value=0.0025 Score=66.30 Aligned_cols=73 Identities=19% Similarity=0.233 Sum_probs=45.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhhh-------hc------------c-chhHHHHHHHHH
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIMS-------KL------------A-GESESNLRKAFE 245 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~~-------~~------------~-g~~~~~l~~vf~ 245 (757)
..++..++|+||+|+||||++..+|+.+ +..+..+++..... .+ . ++....+...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 4567789999999999999999999875 34444444321100 00 0 111112233455
Q ss_pred HHHhcCCeEEEEcccc
Q 004384 246 EAEKNAPSIIFIDEID 261 (757)
Q Consensus 246 ~a~~~~p~il~iDEid 261 (757)
.+....+.++++|+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566778899999864
No 342
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.90 E-value=0.012 Score=73.39 Aligned_cols=168 Identities=13% Similarity=0.124 Sum_probs=94.1
Q ss_pred cccccChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHh-------CCeEEEEechh--
Q 004384 157 YDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET-------GAFFFCINGPE-- 227 (757)
Q Consensus 157 ~~~i~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l-------~~~~~~v~~~~-- 227 (757)
...+.|.++.+++|.+.+...- ...+.|.|+|+.|+||||||+.++... ...++.++...
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~ 191 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQD 191 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCC
T ss_pred CceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcC
Confidence 4568999999999988875310 234569999999999999999887642 12233444221
Q ss_pred ---hh-------hhc---------cchhHHHHHHHHHHHHhcC--CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHh
Q 004384 228 ---IM-------SKL---------AGESESNLRKAFEEAEKNA--PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLM 286 (757)
Q Consensus 228 ---l~-------~~~---------~g~~~~~l~~vf~~a~~~~--p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l 286 (757)
+. ... .......+...+....... +.+|+||+++.. .+ +
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~~----~ 251 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------WV----L 251 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------HH----H
T ss_pred chHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------HH----H
Confidence 00 000 0111223333344333333 789999998732 11 2
Q ss_pred hcccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCC-CCHHHHHHHHHHHhcCCCCCCchhhhHHhHhcCCCc
Q 004384 287 DGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGV-PDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYV 361 (757)
Q Consensus 287 ~~~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~-p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~ 361 (757)
..+.. +..||.||....-.... ......+.++. .+.++-.+++.................+++.+.|.-
T Consensus 252 ~~~~~--~~~ilvTtR~~~~~~~~----~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 252 KAFDN--QCQILLTTRDKSVTDSV----MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp TTTCS--SCEEEEEESSTTTTTTC----CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HhhcC--CCEEEEEcCCHHHHHhh----cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 22222 33555577655332111 12234566665 788888888887664332222234566777777653
No 343
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.89 E-value=0.0006 Score=85.30 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=28.4
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||+++|.+.+.
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 44578899999999999999999999998764
No 344
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.89 E-value=0.00047 Score=65.44 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.3
Q ss_pred CCceeeecCCCCChhHHHHH
Q 004384 465 SKGVLFYGPPGCGKTLLAKA 484 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~ 484 (757)
+.-++|.||||||||||+++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34489999999999999993
No 345
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.89 E-value=0.0018 Score=64.10 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh-------hhhhccchh-H----HHHHHHHHHHHh----cC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE-------IMSKLAGES-E----SNLRKAFEEAEK----NA 251 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~-------l~~~~~g~~-~----~~l~~vf~~a~~----~~ 251 (757)
++.-++++||+|+||||++..++..+ +..++.++... +.+. .|.. . .....+++.+.. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 35568999999999999888777655 44444443211 1111 1100 0 011234444443 34
Q ss_pred CeEEEEccccccc
Q 004384 252 PSIIFIDEIDSIA 264 (757)
Q Consensus 252 p~il~iDEid~l~ 264 (757)
+.+++|||+.++.
T Consensus 90 ~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 90 TKVIGIDEVQFFD 102 (223)
T ss_dssp CCEEEECSGGGSC
T ss_pred CCEEEEecCccCc
Confidence 7899999998753
No 346
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.89 E-value=0.00092 Score=71.05 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=30.3
Q ss_pred hhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhCC--ceEEEeCc
Q 004384 457 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQA--NFISVKGP 499 (757)
Q Consensus 457 ~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~~--~~i~v~~~ 499 (757)
++++++....| +.|.||+|+|||||.+++++.... .-+.+++.
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~ 90 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQ 90 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCE
Confidence 44445555555 889999999999999999987532 23444443
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.88 E-value=0.0023 Score=65.06 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=30.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH---hCCeEEEEechhhh
Q 004384 192 PKGILLYGPPGSGKTLIARAVANE---TGAFFFCINGPEIM 229 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~---l~~~~~~v~~~~l~ 229 (757)
+..|+|+|+|||||||+++.|+.. .+..++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 456999999999999999999987 67777666655443
No 348
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.88 E-value=0.00056 Score=69.11 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
+..|.|+|++||||||+++.|++.++..++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 77899999999999999999999999876653
No 349
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.87 E-value=0.0046 Score=68.69 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=48.2
Q ss_pred CCe-EEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--CCCHHhhccCCcceEEEeCCCC
Q 004384 251 APS-IIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPD 327 (757)
Q Consensus 251 ~p~-il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~--~ld~~l~r~~rf~~~i~i~~p~ 327 (757)
.|. ++++||+..++... ...+...+..+.. .....++.+|.+|++|. .++..++. .+...|.+...+
T Consensus 296 lP~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar-~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-------GKKVEELIARLAQ-KARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-------HHHHHHHHHHHHH-HCGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSS
T ss_pred CCcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHH-HhhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCC
Confidence 354 78999998776421 1122222222222 22334677888888886 57777776 677888888888
Q ss_pred HHHHHHHHH
Q 004384 328 EVGRLEVLR 336 (757)
Q Consensus 328 ~~~r~~il~ 336 (757)
..+...++.
T Consensus 366 ~~dsr~ilg 374 (512)
T 2ius_A 366 KIDSRTILD 374 (512)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 887776663
No 350
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.86 E-value=0.00066 Score=65.05 Aligned_cols=30 Identities=33% Similarity=0.576 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 456999999999999999999999987544
No 351
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.85 E-value=0.00093 Score=71.79 Aligned_cols=79 Identities=19% Similarity=0.338 Sum_probs=47.9
Q ss_pred hhhhcccCCCCceeeecCCCCChhHHHHHHHHHhC----CceEEEeCc-cc-cc---cccCc-----hhHHHHHHHHHHH
Q 004384 456 KFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ----ANFISVKGP-EL-LT---MWFGE-----SEANVREIFDKAR 521 (757)
Q Consensus 456 ~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~~----~~~i~v~~~-~l-~~---~~~g~-----~e~~i~~lf~~a~ 521 (757)
.+.++.+.+...+++.||+|+||||+++++++... ...+.+..+ ++ .. .|+.+ .....+.....+-
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 34444445555599999999999999999998753 222233221 10 00 01111 2223455566666
Q ss_pred hCCCeEEEEeccc
Q 004384 522 QSAPCVLFFDELD 534 (757)
Q Consensus 522 ~~~p~il~iDEid 534 (757)
...|.+|++||+-
T Consensus 207 ~~~pd~illdE~~ 219 (372)
T 2ewv_A 207 REDPDVIFVGEMR 219 (372)
T ss_dssp TSCCSEEEESCCC
T ss_pred hhCcCEEEECCCC
Confidence 6789999999973
No 352
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.85 E-value=0.00077 Score=63.73 Aligned_cols=29 Identities=24% Similarity=0.657 Sum_probs=25.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
..++|.|||||||||+++.+|+.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34899999999999999999999887554
No 353
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.85 E-value=0.0007 Score=65.21 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=26.9
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
+.-++|.|+||+||||+++.|+..++..++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4458999999999999999999999876654
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.85 E-value=0.0016 Score=67.41 Aligned_cols=39 Identities=36% Similarity=0.550 Sum_probs=31.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 228 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l 228 (757)
..+..++|.|||||||||+++.|+..++..++.+++..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 456679999999999999999999988655677776444
No 355
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.84 E-value=0.001 Score=83.20 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+++++.|.|+||+|||||||+++|.+.+
T Consensus 1099 sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1099 SFSVEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred eEEECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 3457899999999999999999999998765
No 356
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.84 E-value=0.00099 Score=63.50 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE 227 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~ 227 (757)
++..++|.|++||||||+++.|++.+ +.+++.+++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 46779999999999999999999987 77777777543
No 357
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.84 E-value=0.00062 Score=66.77 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.6
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
..+.+++.+.|+||+|||||||+++|++.+.
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3567888999999999999999999999875
No 358
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.83 E-value=0.0047 Score=69.18 Aligned_cols=75 Identities=16% Similarity=0.296 Sum_probs=52.7
Q ss_pred CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC--CCCccccCCCccceEEEecCC
Q 004384 525 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPLP 602 (757)
Q Consensus 525 p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~--~ld~allrpgRf~~~i~~~~p 602 (757)
+-++++||+..+...- .......+..+..+ -..-++.+|.+|.+|. .|+..+.. -|...|.+...
T Consensus 344 ~ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~----GRa~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~ 410 (574)
T 2iut_A 344 TIVVVVDEFADMMMIV-------GKKVEELIARIAQK----ARAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVS 410 (574)
T ss_dssp EEEEEESCCTTHHHHT-------CHHHHHHHHHHHHH----CTTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCS
T ss_pred cEEEEEeCHHHHhhhh-------hHHHHHHHHHHHHH----HhhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcC
Confidence 3689999999887531 11222333333333 2345788999999987 78777765 78889999999
Q ss_pred CHHHHHHHHH
Q 004384 603 DEDSRHQIFK 612 (757)
Q Consensus 603 ~~~~r~~Il~ 612 (757)
+..+...|+.
T Consensus 411 s~~Dsr~ILd 420 (574)
T 2iut_A 411 SKIDSRTILD 420 (574)
T ss_dssp CHHHHHHHHS
T ss_pred CHHHHHHhcC
Confidence 9988887874
No 359
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.83 E-value=0.00071 Score=70.27 Aligned_cols=33 Identities=21% Similarity=0.526 Sum_probs=29.7
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
++.+++++.+.|+||+|||||||+++|++.+..
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G 152 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGG 152 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTC
T ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHhhhcCc
Confidence 467889999999999999999999999998843
No 360
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.81 E-value=0.00087 Score=64.15 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
..|+|+|+|||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 359999999999999999999999987654
No 361
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.80 E-value=0.00093 Score=62.94 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
-..|+|.|++||||||+++.|+..++.+++..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999877643
No 362
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.80 E-value=0.00079 Score=63.95 Aligned_cols=29 Identities=34% Similarity=0.635 Sum_probs=26.2
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48999999999999999999999987754
No 363
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.79 E-value=0.0048 Score=68.55 Aligned_cols=76 Identities=17% Similarity=0.347 Sum_probs=50.8
Q ss_pred Ce-EEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCC--CCCccccCCCccceEEEecC
Q 004384 525 PC-VLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPD--IIDPALLRPGRLDQLIYIPL 601 (757)
Q Consensus 525 p~-il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~--~ld~allrpgRf~~~i~~~~ 601 (757)
|- ++++||+..+.... .......+..+... ...-++.+|.+|.+|. .++..+.. -|..+|.|..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~----gRa~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQK----ARAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHH----CGGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHH----hhhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998876421 01122233333222 2233688888999987 57776665 7888999999
Q ss_pred CCHHHHHHHHHH
Q 004384 602 PDEDSRHQIFKA 613 (757)
Q Consensus 602 p~~~~r~~Il~~ 613 (757)
.+..+...|+..
T Consensus 364 ~s~~dsr~ilg~ 375 (512)
T 2ius_A 364 SSKIDSRTILDQ 375 (512)
T ss_dssp SSHHHHHHHHSS
T ss_pred CCHHHHHHhcCC
Confidence 999998888754
No 364
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.79 E-value=0.00078 Score=63.49 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=25.9
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
++|.|||||||||+++.|+..++.+++..
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 32 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKG 32 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecC
Confidence 78999999999999999999999777543
No 365
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.79 E-value=0.00096 Score=64.98 Aligned_cols=31 Identities=35% Similarity=0.596 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
+..|+|+|++||||||+++.|++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4569999999999999999999999876543
No 366
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.79 E-value=0.0018 Score=65.64 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=31.3
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
+.-++|.||||+||||+++.|+..++.+++.+++..+
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3458999999999999999999998866777777655
No 367
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.78 E-value=0.0011 Score=65.26 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=31.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
+..++-|+|.|||||||+|.|+.|+..++... ++..+++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 45567799999999999999999999998754 4444443
No 368
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.77 E-value=0.01 Score=74.06 Aligned_cols=166 Identities=12% Similarity=0.136 Sum_probs=92.2
Q ss_pred cccchhhHHHHhhhhccCCCCChhhhhhcccCCCCceeeecCCCCChhHHHHHHHHHh---C----CceEEEeCccc---
Q 004384 432 DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANEC---Q----ANFISVKGPEL--- 501 (757)
Q Consensus 432 ~i~g~~~~k~~l~~~i~~~~~~~~~~~~~~~~~~~gilL~GppGtGKT~la~~la~~~---~----~~~i~v~~~~l--- 501 (757)
.++|.++..+.|.+.+...- ...+-+.|+|+.|+|||+||+.++... . ...+.+..+..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred eeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 46777877777777653210 112348899999999999999887642 1 12233433221
Q ss_pred --c-------cc---------ccCchhHHHHHHHHHHHhC--CCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHh
Q 004384 502 --L-------TM---------WFGESEANVREIFDKARQS--APCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTE 561 (757)
Q Consensus 502 --~-------~~---------~~g~~e~~i~~lf~~a~~~--~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ 561 (757)
. .. ........+...+...-.. .+.+|+||+++... .
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~-----------------------~ 250 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW-----------------------V 250 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-----------------------H
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-----------------------H
Confidence 0 00 0011112233333332222 37899999987531 1
Q ss_pred hcCCCCCCeEEEEeeCCCCCCCCccccCCCccceEEEecC-CCHHHHHHHHHHhhccCCCCCccCHHHHHHHcCCCC
Q 004384 562 MDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPL-PDEDSRHQIFKACLRKSPVSKDVDLRALAKYTQGFS 637 (757)
Q Consensus 562 ld~~~~~~~v~vi~tTn~~~~ld~allrpgRf~~~i~~~~-p~~~~r~~Il~~~l~~~~~~~~~d~~~la~~~~g~s 637 (757)
++.+.. +.-||.||..+...... . .....+.+++ .+.++-.++|..+.....-.......++++.+.|..
T Consensus 251 ~~~~~~--~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 251 LKAFDN--QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp HTTTCS--SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HHhhcC--CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 222222 33567777655443221 1 2345677775 889999999988774433222233667888887754
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.76 E-value=0.0011 Score=64.03 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
++..|+|.|+|||||||+++.|+..++..++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456799999999999999999999998765543
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.76 E-value=0.0011 Score=65.49 Aligned_cols=32 Identities=28% Similarity=0.443 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
++..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 35679999999999999999999999876544
No 371
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.75 E-value=0.00081 Score=68.22 Aligned_cols=32 Identities=41% Similarity=0.514 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEec
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCING 225 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~ 225 (757)
.++|+||||||||||++.||+.++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999988776654
No 372
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.74 E-value=0.0011 Score=63.72 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 4569999999999999999999999876543
No 373
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.0012 Score=64.19 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=28.0
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.+..|+|+|+|||||||+++.|+..++..++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 345699999999999999999999998775543
No 374
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.71 E-value=0.008 Score=60.08 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=28.0
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeC
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKG 498 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~ 498 (757)
|+.+..-++|+||||+|||+++..+|... +.+.+.++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 56666669999999999999988776542 445555544
No 375
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.70 E-value=0.0013 Score=62.76 Aligned_cols=32 Identities=38% Similarity=0.666 Sum_probs=27.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
+..++|.|+||+||||+++.++..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34599999999999999999999998776543
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.70 E-value=0.00094 Score=67.35 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.2
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
+.+.++.-+.|.||+|||||||++.|++.++.
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 34566777999999999999999999998864
No 377
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.69 E-value=0.00097 Score=67.48 Aligned_cols=29 Identities=38% Similarity=0.525 Sum_probs=25.2
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
++..+++|+||||||||+++++||..++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34567999999999999999999998654
No 378
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.69 E-value=0.00084 Score=65.47 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.++..++|+||+||||||+++.|++.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4567889999999999999999999987
No 379
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.68 E-value=0.0038 Score=69.16 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Q 004384 194 GILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l 216 (757)
.++|.|+||||||+++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998765
No 380
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.68 E-value=0.003 Score=74.37 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHH
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
.+++.++|+||+|+||||+++.+++.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 35667999999999999999999875
No 381
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.67 E-value=0.0011 Score=63.43 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+++.++|+||+|||||||++.|++...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999999765
No 382
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.66 E-value=0.0012 Score=70.61 Aligned_cols=34 Identities=29% Similarity=0.632 Sum_probs=25.7
Q ss_pred hhhcccCCCCc--eeeecCCCCChhHHHHHHHHHhC
Q 004384 457 FEKFGMSPSKG--VLFYGPPGCGKTLLAKAIANECQ 490 (757)
Q Consensus 457 ~~~~~~~~~~g--ilL~GppGtGKT~la~~la~~~~ 490 (757)
++++++....| +.|.||+|||||||.+++|+...
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 33344444344 88999999999999999998754
No 383
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0029 Score=63.43 Aligned_cols=37 Identities=27% Similarity=0.332 Sum_probs=28.3
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHH----hCCeEEEEe
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANE----TGAFFFCIN 224 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~----l~~~~~~v~ 224 (757)
|++++.-++|+|+||+|||+|+..+|.. .+..++.++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 5778889999999999999999876533 245555544
No 384
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.65 E-value=0.012 Score=64.09 Aligned_cols=71 Identities=18% Similarity=0.179 Sum_probs=47.4
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhhh----------h---------hcc-chhHHHHHHHHHHH
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEIM----------S---------KLA-GESESNLRKAFEEA 247 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l~----------~---------~~~-g~~~~~l~~vf~~a 247 (757)
++..|+++|++|+||||++..||..+ +..+..+.+.... . ... ......+...++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998765 4555555542110 0 001 12233456677777
Q ss_pred HhcCCeEEEEcccc
Q 004384 248 EKNAPSIIFIDEID 261 (757)
Q Consensus 248 ~~~~p~il~iDEid 261 (757)
....+.++++|..-
T Consensus 179 ~~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 KSKGVDIIIVDTAG 192 (443)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HhCCCCEEEEECCC
Confidence 77778899999864
No 385
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.65 E-value=0.00097 Score=70.43 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=50.8
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhC--CceEEEeCccccc-----c---ccCchhHHHHHHHHHHHhCCCeEEEEec
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISVKGPELLT-----M---WFGESEANVREIFDKARQSAPCVLFFDE 532 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~--~~~i~v~~~~l~~-----~---~~g~~e~~i~~lf~~a~~~~p~il~iDE 532 (757)
.+...+++.||+|+|||||++++++... ...+.+.+..... . ++.......+..+..|-...|.++++||
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE 248 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGE 248 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcC
Confidence 3445699999999999999999999864 3456666543211 1 2211234556677778788899999999
Q ss_pred ccc
Q 004384 533 LDS 535 (757)
Q Consensus 533 id~ 535 (757)
.-.
T Consensus 249 ~~~ 251 (330)
T 2pt7_A 249 LRS 251 (330)
T ss_dssp CCS
T ss_pred CCh
Confidence 744
No 386
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.65 E-value=0.0011 Score=69.94 Aligned_cols=113 Identities=15% Similarity=0.182 Sum_probs=64.4
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh---------------C----CceEEEeCcccccc-----c---cC------
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC---------------Q----ANFISVKGPELLTM-----W---FG------ 507 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~---------------~----~~~i~v~~~~l~~~-----~---~g------ 507 (757)
|+++..-++|+||||+|||++|..+|... + .+.++++...-... + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55555569999999999999999998763 2 45566665442100 0 01
Q ss_pred ----------chh---HHHHHHHHHHHh-CCCeEEEEecccchhcccCCCCCCCCcch--HHHHHHHHHhhcCCCCCCeE
Q 004384 508 ----------ESE---ANVREIFDKARQ-SAPCVLFFDELDSIATQRGSSVGDAGGAA--DRVLNQLLTEMDGMSAKKTV 571 (757)
Q Consensus 508 ----------~~e---~~i~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~--~~~~~~ll~~ld~~~~~~~v 571 (757)
..+ ..+..+.+..+. ..+.++++|.+..+......+. +... ...+.+++..|..+....++
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~---~~~~~r~~~~~~~~~~L~~la~~~~~ 250 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR---GKLAERQQKLGRHMATLNKLADLFNC 250 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT---TSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC---ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 011 112234444455 6689999999999875321110 1112 23456666666554433445
Q ss_pred EEEee
Q 004384 572 FIIGA 576 (757)
Q Consensus 572 ~vi~t 576 (757)
.||.+
T Consensus 251 ~vi~~ 255 (322)
T 2i1q_A 251 VVLVT 255 (322)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55554
No 387
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.65 E-value=0.00094 Score=64.09 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=25.7
Q ss_pred CceeeecCCCCChhHHHHHHHHH-hCCceEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANE-CQANFIS 495 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~-~~~~~i~ 495 (757)
..++|.|+|||||||+++.||.. ++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 34999999999999999999998 6766653
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.0013 Score=61.99 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
..|+|.|++||||||+++.|+..++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 359999999999999999999999987554
No 389
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.65 E-value=0.0012 Score=63.47 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+..|+|.|+|||||||+++.|+..++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35699999999999999999999887
No 390
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.65 E-value=0.0021 Score=73.11 Aligned_cols=32 Identities=31% Similarity=0.414 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET---GAFFFCI 223 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v 223 (757)
...++|.|||||||||++..++..+ +..+...
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3579999999999999999998754 4444433
No 391
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.65 E-value=0.0013 Score=62.05 Aligned_cols=29 Identities=41% Similarity=0.631 Sum_probs=25.2
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.|+|+|||||||||+++.| ..++..++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5899999999999999999 8888876543
No 392
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.64 E-value=0.018 Score=65.33 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=81.0
Q ss_pred cChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHH----HhCCeE---EEEechh-----h
Q 004384 161 GGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN----ETGAFF---FCINGPE-----I 228 (757)
Q Consensus 161 ~G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~----~l~~~~---~~v~~~~-----l 228 (757)
.|.+..+++|.+.+... +-.....|.|+|+.|+||||||+.++. .....| +.++.+. .
T Consensus 131 ~GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHH
T ss_pred CCchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCH
Confidence 49999999998887421 112346799999999999999999996 333222 3333222 1
Q ss_pred -------hhhccc------------hhHHHHHHHHHHHHhcC-CeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhc
Q 004384 229 -------MSKLAG------------ESESNLRKAFEEAEKNA-PSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDG 288 (757)
Q Consensus 229 -------~~~~~g------------~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~ 288 (757)
...... .....+...+....... ..+|++|+++... ++ .+...
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~----------------~~-~~~~~ 263 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE----------------TI-RWAQE 263 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH----------------HH-HHHHH
T ss_pred HHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch----------------hh-ccccc
Confidence 000000 01122334444444554 7899999986421 11 11111
Q ss_pred ccCCCeEEEEEecCCCCCCCHHhhccCCcceEEEeCCCCHHHHHHHHHHHh
Q 004384 289 LKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHT 339 (757)
Q Consensus 289 ~~~~~~v~vI~atn~~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 339 (757)
.+..||.||...... ...+.....+.++..+.++-.+++..+.
T Consensus 264 ----~gs~ilvTTR~~~v~----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 264 ----LRLRCLVTTRDVEIS----NAASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp ----TTCEEEEEESBGGGG----GGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred ----CCCEEEEEcCCHHHH----HHcCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 223445566543211 1111133568888899999888888764
No 393
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.64 E-value=0.001 Score=63.23 Aligned_cols=26 Identities=46% Similarity=0.567 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCCHHHHHHHHHH-HhCC
Q 004384 193 KGILLYGPPGSGKTLIARAVAN-ETGA 218 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~-~l~~ 218 (757)
..|+|.|+|||||||+++.|+. .++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~ 29 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGF 29 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCc
Confidence 4689999999999999999998 4554
No 394
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.64 E-value=0.0013 Score=65.47 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
.+..|+|.|+|||||||+++.|+..++..++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 45679999999999999999999999876554
No 395
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.64 E-value=0.00094 Score=63.73 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
+..|+|.|+|||||||+++.|+..++..++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456999999999999999999999998765
No 396
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.63 E-value=0.013 Score=65.57 Aligned_cols=73 Identities=16% Similarity=0.290 Sum_probs=49.4
Q ss_pred eEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCCC--CCCHHhhccCCcceEEEeCCCCHHH
Q 004384 253 SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPN--SIDPALRRFGRFDREIDIGVPDEVG 330 (757)
Q Consensus 253 ~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~~--~ld~~l~r~~rf~~~i~i~~p~~~~ 330 (757)
.+++|||++.++.... ..+...+..+...- ...++.+|.+|.+|. .++..++. .|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-------~~~~~~L~~Iar~G-Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-------KKVEELIARIAQKA-RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-------HHHHHHHHHHHHHC-TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-------HHHHHHHHHHHHHH-hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHH
Confidence 5899999998764321 12223333333322 345788888999887 78888877 678888888888777
Q ss_pred HHHHH
Q 004384 331 RLEVL 335 (757)
Q Consensus 331 r~~il 335 (757)
...++
T Consensus 415 sr~IL 419 (574)
T 2iut_A 415 SRTIL 419 (574)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76665
No 397
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.62 E-value=0.0012 Score=67.08 Aligned_cols=31 Identities=35% Similarity=0.482 Sum_probs=27.6
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEEeC
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISVKG 498 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v~~ 498 (757)
++|.|||||||||+|+.||..++..++..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 7899999999999999999999988776654
No 398
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.62 E-value=0.004 Score=64.93 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechh
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPE 227 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~ 227 (757)
..|+|+||+|||||||++.||..++..++.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 46999999999999999999999998887776543
No 399
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.61 E-value=0.0015 Score=64.73 Aligned_cols=29 Identities=28% Similarity=0.458 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
..|.|.||+||||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46999999999999999999999987654
No 400
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.60 E-value=0.0017 Score=65.36 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.++..|+|.|||||||||+++.|+..++..++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3567799999999999999999999998765543
No 401
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.59 E-value=0.0013 Score=62.85 Aligned_cols=29 Identities=21% Similarity=0.518 Sum_probs=26.3
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
-|+|.|+|||||||+|+.||..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 38999999999999999999999988764
No 402
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.59 E-value=0.0011 Score=64.47 Aligned_cols=27 Identities=30% Similarity=0.669 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+++.+.|+||+|+|||||++.|++.+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 467799999999999999999999775
No 403
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.59 E-value=0.0014 Score=81.78 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=26.6
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+++++.+.|+||+|||||||+++|++..
T Consensus 1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp EEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 346788999999999999999999999865
No 404
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.59 E-value=0.0016 Score=63.06 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 4579999999999999999999999865543
No 405
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.59 E-value=0.00056 Score=68.93 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34567889999999999999999999998653
No 406
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.58 E-value=0.0012 Score=64.65 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.++..+.|.||||||||||+++|++.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999999999875
No 407
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.57 E-value=0.002 Score=61.92 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
+..|+|.|+|||||||+++.|+..++..++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 4579999999999999999999999876554
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.56 E-value=0.0015 Score=61.48 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=27.6
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
..++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 3589999999999999999999999888653
No 409
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.54 E-value=0.0016 Score=63.28 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.9
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
+.-++|.|||||||||+++.|++.++. +.+++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 345899999999999999999999864 44555554
No 410
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.54 E-value=0.0018 Score=70.75 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=25.1
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.++ .++|+||+|+|||||+++|+..++
T Consensus 56 l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 56 LELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp EECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred EecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 345677 899999999999999999976654
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.54 E-value=0.0019 Score=65.41 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=27.9
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.++..|.|.||+||||||+++.|+..++..++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 34567999999999999999999999987654
No 412
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.54 E-value=0.0019 Score=62.76 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.+..|+|.|++||||||+++.|+..++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 345699999999999999999999998765543
No 413
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.54 E-value=0.0049 Score=67.95 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh----CCeEEEEec
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 225 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l----~~~~~~v~~ 225 (757)
|+.++.-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 68899999999999999999999887653 445555554
No 414
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.54 E-value=0.0017 Score=63.48 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=27.6
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhhh
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCINGPEIM 229 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l~ 229 (757)
.|+|.|||||||+|.|+.|+..++.+.+ +..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 4789999999999999999999987654 434443
No 415
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.54 E-value=0.002 Score=64.36 Aligned_cols=32 Identities=28% Similarity=0.414 Sum_probs=27.7
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
.+..|+|.|+|||||||+++.|+..++..++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 34579999999999999999999999976554
No 416
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.54 E-value=0.0012 Score=73.76 Aligned_cols=73 Identities=21% Similarity=0.253 Sum_probs=48.4
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCC--eEEEEechh-hhhh-----------ccchhHHHHHHHHHHHHhcCCeE
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETGA--FFFCINGPE-IMSK-----------LAGESESNLRKAFEEAEKNAPSI 254 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~~--~~~~v~~~~-l~~~-----------~~g~~~~~l~~vf~~a~~~~p~i 254 (757)
+..+.+++|+||+||||||+++++++.+.. ..+.+.+.. +... ..+.....+...+..+..+.|.+
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ 336 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDY 336 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCe
Confidence 356778999999999999999999998753 355665532 2100 00001112345566667789999
Q ss_pred EEEcccc
Q 004384 255 IFIDEID 261 (757)
Q Consensus 255 l~iDEid 261 (757)
+++.|+-
T Consensus 337 iivgEir 343 (511)
T 2oap_1 337 IIVGEVR 343 (511)
T ss_dssp EEESCCC
T ss_pred EEeCCcC
Confidence 9999963
No 417
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.54 E-value=0.0021 Score=80.12 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=28.3
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+++++.+.|+||+|||||||+++|++.+.
T Consensus 410 sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 410 NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp EEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44578999999999999999999999998764
No 418
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.53 E-value=0.0016 Score=65.58 Aligned_cols=31 Identities=29% Similarity=0.537 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.+..++|+|||||||||+++.|+..++....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3578999999999999999999988876543
No 419
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.53 E-value=0.0017 Score=63.96 Aligned_cols=30 Identities=23% Similarity=0.445 Sum_probs=26.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 489999999999999999999998765543
No 420
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.53 E-value=0.0014 Score=64.85 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.+..|+|.|||||||||+++.|+..++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 3457999999999999999999999987544
No 421
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0017 Score=63.87 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.|+|.|||||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 489999999999999999999998765543
No 422
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.51 E-value=0.0057 Score=68.96 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=64.7
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechh----hhhh---------------cc-------c--hh
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPE----IMSK---------------LA-------G--ES 236 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~----l~~~---------------~~-------g--~~ 236 (757)
++.++..++|.||||||||||++.+++.. +...+.+...+ +... .. . ..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 67889999999999999999999999865 33333443211 1000 00 0 12
Q ss_pred HHHHHHHHHHHHhcCCeEEEEcccccccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCCC
Q 004384 237 ESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRP 304 (757)
Q Consensus 237 ~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~~ 304 (757)
....+.++..+....|.++++|=+..+-... +.. .....+..++..++.. ++.+|.+++..
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~--~~~----~~~~~i~~ll~~l~~~-g~tvilvsh~~ 417 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV--SNN----AFRQFVIGVTGYAKQE-EITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS--CHH----HHHHHHHHHHHHHHHT-TCEEEEEEECS
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC--ChH----HHHHHHHHHHHHHHhC-CCEEEEEECcc
Confidence 3455667778888899999999544443321 111 1334444444444333 34555566654
No 423
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.51 E-value=0.0015 Score=64.31 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=30.0
Q ss_pred CCCCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccccc
Q 004384 463 SPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLT 503 (757)
Q Consensus 463 ~~~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~~ 503 (757)
..++-|+|.||||+||+|.|+.||..++.+ .++..+++.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 344558899999999999999999998754 455555543
No 424
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.50 E-value=0.0089 Score=65.07 Aligned_cols=72 Identities=25% Similarity=0.204 Sum_probs=44.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEechhh----------hhhc---------cc-hhHHHHHHHHHHH
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET---GAFFFCINGPEI----------MSKL---------AG-ESESNLRKAFEEA 247 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~~~l----------~~~~---------~g-~~~~~l~~vf~~a 247 (757)
++..++++||+|+||||++..||..+ +..+..+++... .... .+ .........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46779999999999999999998765 455544443211 0000 01 1122234455566
Q ss_pred HhcCCeEEEEccccc
Q 004384 248 EKNAPSIIFIDEIDS 262 (757)
Q Consensus 248 ~~~~p~il~iDEid~ 262 (757)
....+.++++|....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556788999998643
No 425
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.50 E-value=0.0082 Score=62.86 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004384 188 GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCIN 224 (757)
Q Consensus 188 ~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~ 224 (757)
|+.++.-++|.|+||+|||+|+..+|... +.+.+.++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 68899999999999999999999988654 34555554
No 426
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.50 E-value=0.0015 Score=62.42 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=24.9
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
-++|.|+|||||||+++.|+..++.+++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4899999999999999999999886554
No 427
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.49 E-value=0.002 Score=60.49 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
.|+|.|++||||||+++.|+..++..++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48999999999999999999999977654
No 428
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.49 E-value=0.0016 Score=63.85 Aligned_cols=28 Identities=39% Similarity=0.449 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.++..+.|.||+|||||||++.|++.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567799999999999999999999887
No 429
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.49 E-value=0.0061 Score=73.68 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Q 004384 192 PKGILLYGPPGSGKTLIARAVANE 215 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~ 215 (757)
++.++|+||+|+||||++|.+ +.
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HH
T ss_pred CcEEEEECCCCCChHHHHHHH-HH
Confidence 577999999999999999999 43
No 430
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.48 E-value=0.0016 Score=61.23 Aligned_cols=28 Identities=39% Similarity=0.613 Sum_probs=24.4
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
++|.|||||||||+++.| ..++.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 789999999999999999 8888776553
No 431
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.48 E-value=0.0017 Score=63.51 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=27.2
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEEeCcccc
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISVKGPELL 502 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l~ 502 (757)
|+|.||||+||+|.|+.||..++.+. ++..+++
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 78999999999999999999998654 4545554
No 432
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.47 E-value=0.0018 Score=61.08 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=26.0
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
-|+|.|+|||||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 48999999999999999999999877654
No 433
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.46 E-value=0.0019 Score=61.13 Aligned_cols=33 Identities=30% Similarity=0.504 Sum_probs=26.7
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
-++|.||||+||||+++.+++.++..+ +++.++
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred EEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 489999999999999999999887544 455444
No 434
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.46 E-value=0.00085 Score=66.96 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=20.4
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHH-HHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVA-NETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la-~~l~ 217 (757)
++.+.++..+.|+||+|||||||++.|+ +.++
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3455778889999999999999999999 8764
No 435
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.46 E-value=0.002 Score=63.69 Aligned_cols=31 Identities=26% Similarity=0.517 Sum_probs=26.8
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
.-|+|.|+|||||||+++.||..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3489999999999999999999998766543
No 436
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.45 E-value=0.0019 Score=63.65 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
+..|+|.|+|||||||+++.|+..++..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35699999999999999999999998766543
No 437
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.45 E-value=0.0017 Score=64.21 Aligned_cols=29 Identities=17% Similarity=0.324 Sum_probs=25.3
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.++++.+.|+||+|+|||||+++|++...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46788899999999999999999999876
No 438
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.45 E-value=0.0022 Score=62.38 Aligned_cols=30 Identities=40% Similarity=0.557 Sum_probs=26.5
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
-|+|.|+|||||||+++.|+..++.+++..
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 489999999999999999999998776544
No 439
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.45 E-value=0.0022 Score=62.43 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=26.0
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
.-++|.|+||+||||+++.|++.++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 458999999999999999999999866543
No 440
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.44 E-value=0.0015 Score=62.71 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 193 KGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+.+.|.||+|+|||||+++|++.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999999875
No 441
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.44 E-value=0.0016 Score=63.82 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.4
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
.++.-++|+||+|+|||||++.|++.++.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35677999999999999999999998754
No 442
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.43 E-value=0.0045 Score=62.91 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=29.4
Q ss_pred ceeeecCCCCChhHHHHHHHHH---hCCceEEEeCcccc
Q 004384 467 GVLFYGPPGCGKTLLAKAIANE---CQANFISVKGPELL 502 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~---~~~~~i~v~~~~l~ 502 (757)
-|+|.|+||+||||+|+.|+.. .+.+++.++...+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 4899999999999999999987 67777766655443
No 443
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.43 E-value=0.0019 Score=62.23 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=27.0
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
.-++|.|+|||||||+++.||..++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4589999999999999999999998776543
No 444
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.42 E-value=0.015 Score=60.25 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.0
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC 489 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~ 489 (757)
+.-++|.||+|+||||++..+|..+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999999865
No 445
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.41 E-value=0.0031 Score=68.60 Aligned_cols=71 Identities=23% Similarity=0.421 Sum_probs=43.8
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCC---eEEEEech-hhh-h-----hccchhHHHHHHHHHHHHhcCCeEEEEccc
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANETGA---FFFCINGP-EIM-S-----KLAGESESNLRKAFEEAEKNAPSIIFIDEI 260 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l~~---~~~~v~~~-~l~-~-----~~~g~~~~~l~~vf~~a~~~~p~il~iDEi 260 (757)
++..++|+||+||||||+++++++.+.. .++.+.-+ +.. . .......-.....+..+..+.|.++++.|+
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 4566999999999999999999998753 23333211 110 0 000011112334555666788999999986
Q ss_pred c
Q 004384 261 D 261 (757)
Q Consensus 261 d 261 (757)
.
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 3
No 446
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.40 E-value=0.0034 Score=62.04 Aligned_cols=68 Identities=19% Similarity=0.180 Sum_probs=42.6
Q ss_pred eeeecCCCCChhHHHHHHHHHh---CCceEEEeCcc-------ccccccCch-----hHHHHHHHHHHHh----CCCeEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE-------LLTMWFGES-----EANVREIFDKARQ----SAPCVL 528 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~-------l~~~~~g~~-----e~~i~~lf~~a~~----~~p~il 528 (757)
++++||+|+||||++..++..+ +...+.++... +.+. .|-. ......+++.++. ..+.+|
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 7888999999999988887665 44555553221 2111 1211 0122456666655 347899
Q ss_pred EEecccch
Q 004384 529 FFDELDSI 536 (757)
Q Consensus 529 ~iDEid~l 536 (757)
++||+..+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999875
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.39 E-value=0.0014 Score=69.05 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=35.1
Q ss_pred ChHHHHHHHHHHHHccccChhhHhhhCCCCCceEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 162 GVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 162 G~~~~~~~i~~~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.++...+.+.+.+...+.. .....++|+|++||||||++++||+.++..|+
T Consensus 3 ~~~~L~~~il~~l~~~i~~---------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~ 53 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIED---------NYRVCVILVGSPGSGKSTIAEELCQIINEKYH 53 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTT---------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcc---------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCee
Confidence 4455555555555432211 12235999999999999999999999886653
No 448
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.38 E-value=0.013 Score=60.58 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHh----CCeEEEEec
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANET----GAFFFCING 225 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l----~~~~~~v~~ 225 (757)
.++..++|+||+|+||||++..||..+ |..+..+++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 356789999999999999999998765 334544543
No 449
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0021 Score=61.76 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=25.6
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
-|+|.|+|||||||+++.|+..++.+++.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48999999999999999999999876643
No 450
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.38 E-value=0.0069 Score=67.05 Aligned_cols=96 Identities=23% Similarity=0.311 Sum_probs=54.4
Q ss_pred ceeeecCCCCChhHHHHHHHHHh---CC-ceEEEeCccc----cccccCchhHHHHHHHHHH----------------Hh
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC---QA-NFISVKGPEL----LTMWFGESEANVREIFDKA----------------RQ 522 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~---~~-~~i~v~~~~l----~~~~~g~~e~~i~~lf~~a----------------~~ 522 (757)
.+++.|+||||||+++.+++..+ +. ..+.+....- +....+.....+..++... ..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 69999999999999999998765 22 2333322211 1111111122233333210 01
Q ss_pred CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 523 SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 523 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
....++++||+..+. ...+..++..+. ...+++++|-.+.
T Consensus 127 ~~~~~iiiDE~~~~~--------------~~~~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 127 AKCRVLICDEVSMYD--------------RKLFKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp SSCSEEEESCGGGCC--------------HHHHHHHHHHSC---TTCEEEEEECTTS
T ss_pred cCCCEEEEECchhCC--------------HHHHHHHHHhcc---CCCEEEEECCHHH
Confidence 134799999997642 345566666554 4557888886655
No 451
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.38 E-value=0.0043 Score=73.94 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=27.5
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
++.+.++..+.|+||+|+|||||+++|++.+
T Consensus 693 Sl~I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 693 NFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3556789999999999999999999999865
No 452
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.37 E-value=0.0022 Score=62.48 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
.|.|+|++||||||+++.|++ ++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 589999999999999999999 8765544
No 453
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.37 E-value=0.0021 Score=63.34 Aligned_cols=30 Identities=27% Similarity=0.474 Sum_probs=26.5
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
.|+|.|+|||||||+++.||..++.+++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 489999999999999999999998776654
No 454
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.37 E-value=0.033 Score=58.84 Aligned_cols=142 Identities=18% Similarity=0.154 Sum_probs=83.5
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHh---CC-e--EEEEechhhhhhccchhHHHHHHHHHHH----HhcCCeEEEEcccc
Q 004384 192 PKGILLYGPPGSGKTLIARAVANET---GA-F--FFCINGPEIMSKLAGESESNLRKAFEEA----EKNAPSIIFIDEID 261 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l---~~-~--~~~v~~~~l~~~~~g~~~~~l~~vf~~a----~~~~p~il~iDEid 261 (757)
...+||+||+|.||++.++.++..+ +. . .+.+++. ..++.+++.+ .-....+++|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 4579999999999999999998765 21 2 1222210 1233333333 23456799999998
Q ss_pred c-ccCCCCCCchHHHHHHHHHHHHHhhcccCCCeEEEEEecCC-----CCCCCHHhhccCCcceEEEeCCCCHHHHHHHH
Q 004384 262 S-IAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNR-----PNSIDPALRRFGRFDREIDIGVPDEVGRLEVL 335 (757)
Q Consensus 262 ~-l~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~v~vI~atn~-----~~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il 335 (757)
. +... ..+.|+..++.... ..++|+.+++. ...+.+.+.+ |. ..+.+..++..+....+
T Consensus 87 ~kl~~~-----------~~~aLl~~le~p~~-~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 87 NGPNAA-----------INEQLLTLTGLLHD-DLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp SCCCTT-----------HHHHHHHHHTTCBT-TEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHH
T ss_pred CCCChH-----------HHHHHHHHHhcCCC-CeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHH
Confidence 7 5321 23557777765433 34444444431 1234456555 44 56888888888888777
Q ss_pred HHHhcCCCCC-CchhhhHHhHhcCC
Q 004384 336 RIHTKNMKLS-DDVDLERIAKDTHG 359 (757)
Q Consensus 336 ~~~~~~~~l~-~~~~l~~la~~t~g 359 (757)
+..++...+. ++..+..++..+.|
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhch
Confidence 7665443322 22346666666654
No 455
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.37 E-value=0.0021 Score=66.48 Aligned_cols=37 Identities=38% Similarity=0.549 Sum_probs=30.1
Q ss_pred CCceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
+.-++|.||||+||||+++.++..+...++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 3458999999999999999999988656677776444
No 456
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.36 E-value=0.0028 Score=63.07 Aligned_cols=31 Identities=29% Similarity=0.538 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCeEEE
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGAFFFC 222 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~~~~~ 222 (757)
+..+.|.||+||||||+++.|+..++..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4579999999999999999999999876543
No 457
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.36 E-value=0.0019 Score=62.01 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.4
Q ss_pred ceeeecCCCCChhHHHHHHHHHhC
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQ 490 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~ 490 (757)
-++|.|||||||||+++.|+..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999886
No 458
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.35 E-value=0.0024 Score=61.97 Aligned_cols=28 Identities=29% Similarity=0.597 Sum_probs=25.4
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.|+|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4899999999999999999999998654
No 459
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.35 E-value=0.013 Score=56.36 Aligned_cols=101 Identities=18% Similarity=0.188 Sum_probs=58.7
Q ss_pred ceeeecCCCCChhHHHHHHHHHh---CCceEEE---eCc------cccccc-----------cCc------hhHHHHHHH
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC---QANFISV---KGP------ELLTMW-----------FGE------SEANVREIF 517 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~---~~~~i~v---~~~------~l~~~~-----------~g~------~e~~i~~lf 517 (757)
.+++|+++|.||||+|-++|-.. |.....+ ++. +++... .-. .+......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 48999999999999999998653 5555555 331 222222 101 123455566
Q ss_pred HHHHh----CCCeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCC
Q 004384 518 DKARQ----SAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRP 580 (757)
Q Consensus 518 ~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~ 580 (757)
+.++. ....++++||+-.....+-- ..+ .++..+..- ..+.-||.|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~~----ev~~~l~~R--p~~~~vIlTGr~a 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------PLE----EVISALNAR--PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CHH----HHHHHHHTS--CTTCEEEEECSSC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------CHH----HHHHHHHhC--cCCCEEEEECCCC
Confidence 65554 34789999999765443211 122 344444432 2345677787764
No 460
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0029 Score=65.85 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=26.6
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..++|+||+|+||||+++.||+.+
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 345678889999999999999999999976
No 461
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.34 E-value=0.0032 Score=73.29 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.1
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHH
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAV 212 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~l 212 (757)
++.+++++.+.|+||+|||||||++++
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 345678899999999999999999764
No 462
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.33 E-value=0.0022 Score=63.68 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=26.8
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
.-|+|.|+|||||||+++.||..++..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4589999999999999999999998766543
No 463
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.33 E-value=0.0024 Score=61.28 Aligned_cols=35 Identities=29% Similarity=0.425 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEechhh
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEI 228 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~~~l 228 (757)
..++|+|||||||||+++.|++..+.. +.+++.++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~~ 37 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDII 37 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe-EEEcccch
Confidence 458999999999999999999865432 45555443
No 464
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.32 E-value=0.0025 Score=59.79 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.5
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
|+|.|+|||||||+++.|+..++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 7899999999999999999999877764
No 465
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.32 E-value=0.016 Score=60.81 Aligned_cols=28 Identities=36% Similarity=0.386 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
..++..+.|+||+|+||||+++.||+.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999999876
No 466
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.32 E-value=0.0023 Score=62.95 Aligned_cols=29 Identities=28% Similarity=0.465 Sum_probs=25.4
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
|+|.||||+||||+++.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999999999988766544
No 467
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.32 E-value=0.0017 Score=61.81 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=21.8
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
-|+|.|+|||||||+++.|+..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4899999999999999999999998776
No 468
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.30 E-value=0.0022 Score=62.60 Aligned_cols=27 Identities=37% Similarity=0.379 Sum_probs=23.8
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.|.|.||+||||||+++.|++ +|..++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCccc
Confidence 589999999999999999998 776654
No 469
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.30 E-value=0.0025 Score=62.70 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.5
Q ss_pred eeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 468 VLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 468 ilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
|+|.||||+||||+|+.|+..++..++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 78999999999999999999998766543
No 470
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0026 Score=61.55 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=25.7
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
+...+++.++|+||+|+|||||++.|++...
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3344677899999999999999999999876
No 471
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.29 E-value=0.0065 Score=63.21 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=42.7
Q ss_pred CCCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccccc--------cc-------------cCchhHHHHHHHHH
Q 004384 464 PSKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELLT--------MW-------------FGESEANVREIFDK 519 (757)
Q Consensus 464 ~~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~~--------~~-------------~g~~e~~i~~lf~~ 519 (757)
++.-+++.||||+||||++..+|..+ +.....+.+ |... .| .++....+...+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 34458999999999999999999875 333333332 2210 01 01111122334555
Q ss_pred HHhCCCeEEEEeccc
Q 004384 520 ARQSAPCVLFFDELD 534 (757)
Q Consensus 520 a~~~~p~il~iDEid 534 (757)
+....|.++++|+.-
T Consensus 182 a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 ALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHTTCSEEEEEECC
T ss_pred HHhcCCCEEEEECCC
Confidence 666778899999874
No 472
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.29 E-value=0.0027 Score=60.90 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=26.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
.-++|.|+|||||||+++.|+..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3589999999999999999999988666543
No 473
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.28 E-value=0.0032 Score=60.44 Aligned_cols=31 Identities=32% Similarity=0.291 Sum_probs=27.0
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004384 194 GILLYGPPGSGKTLIARAVANET---GAFFFCIN 224 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~ 224 (757)
.|+|.|++||||||+++.|+..+ +..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 48999999999999999999988 77776654
No 474
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.28 E-value=0.045 Score=53.71 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=23.5
Q ss_pred ceeeecCCCCChhHHHHHHHHHh---CCceEEE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC---QANFISV 496 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~---~~~~i~v 496 (757)
.+++.|+||+||||++-.+|..+ |...+.+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 38999999999999999888764 4444433
No 475
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.28 E-value=0.0025 Score=62.18 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=26.2
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
..++..++|+|||||||||+++.|+..++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc
Confidence 356778999999999999999999998853
No 476
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.28 E-value=0.0028 Score=62.32 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=26.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEEEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFFCI 223 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~~v 223 (757)
.|+|.|+|||||||+++.|+..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998765543
No 477
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.27 E-value=0.016 Score=57.99 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=26.6
Q ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCeEEEEec
Q 004384 193 KGILLYGPPGSGKTLIARAVANETGAFFFCING 225 (757)
Q Consensus 193 ~~vLL~Gp~GtGKTtLar~la~~l~~~~~~v~~ 225 (757)
..++|+||+|+|||.++..++...+...+.+..
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P 141 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 141 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeC
Confidence 359999999999999999988887666555543
No 478
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.27 E-value=0.0025 Score=61.59 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=26.1
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFIS 495 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~ 495 (757)
.-++|.|+|||||||+++.|+..++..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 458999999999999999999999866544
No 479
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.27 E-value=0.0028 Score=61.52 Aligned_cols=34 Identities=21% Similarity=0.147 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh-CCeEEEEe
Q 004384 191 PPKGILLYGPPGSGKTLIARAVANET-GAFFFCIN 224 (757)
Q Consensus 191 ~~~~vLL~Gp~GtGKTtLar~la~~l-~~~~~~v~ 224 (757)
.+..|+|.|++||||||+++.|+..+ +..++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 35679999999999999999999988 45565554
No 480
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.26 E-value=0.003 Score=63.02 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=26.9
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISV 496 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v 496 (757)
..|+|.|+|||||||+++.||..++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3489999999999999999999998776543
No 481
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.26 E-value=0.0025 Score=61.97 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=27.8
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh---CCceEEEeCccc
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPEL 501 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l 501 (757)
+.-+.|.||+||||||++++||+.+ +...+.+++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3448899999999999999999987 433335555443
No 482
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.26 E-value=0.0011 Score=68.55 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.8
Q ss_pred hhCCCCCceEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 186 SIGVKPPKGILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 186 ~l~i~~~~~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
++.+.+++.+.|+||+|||||||+++|++.+.
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 34567888999999999999999999998654
No 483
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.23 E-value=0.0025 Score=62.25 Aligned_cols=28 Identities=25% Similarity=0.199 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.++..|.|.|++||||||+++.|++.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3556779999999999999999999987
No 484
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.23 E-value=0.0029 Score=62.02 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=31.5
Q ss_pred CCCCceEEEEcCCCCCHHHHHHHHHHHhC----CeEEEEechhh
Q 004384 189 VKPPKGILLYGPPGSGKTLIARAVANETG----AFFFCINGPEI 228 (757)
Q Consensus 189 i~~~~~vLL~Gp~GtGKTtLar~la~~l~----~~~~~v~~~~l 228 (757)
+.++..|+|.|++||||||+++.|++.++ ..++.+++..+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45677899999999999999999998765 44666665443
No 485
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.23 E-value=0.0019 Score=61.35 Aligned_cols=21 Identities=33% Similarity=0.505 Sum_probs=19.8
Q ss_pred ceeeecCCCCChhHHHHHHHH
Q 004384 467 GVLFYGPPGCGKTLLAKAIAN 487 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~ 487 (757)
-++|.|+||+||||+++.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 489999999999999999998
No 486
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.22 E-value=0.0028 Score=62.70 Aligned_cols=28 Identities=36% Similarity=0.540 Sum_probs=25.1
Q ss_pred ceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 467 GVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
-+.|.||+||||||+++.+++.++.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 4899999999999999999999886654
No 487
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.22 E-value=0.0032 Score=62.36 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=24.9
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCeEE
Q 004384 194 GILLYGPPGSGKTLIARAVANETGAFFF 221 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~~~~~ 221 (757)
.|+|.|+|||||||+++.|+..++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4899999999999999999999986544
No 488
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.22 E-value=0.0056 Score=67.70 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=29.2
Q ss_pred ccCCCCceeeecCCCCChhHHHHHHHHHh----CCceEEEeC
Q 004384 461 GMSPSKGVLFYGPPGCGKTLLAKAIANEC----QANFISVKG 498 (757)
Q Consensus 461 ~~~~~~gilL~GppGtGKT~la~~la~~~----~~~~i~v~~ 498 (757)
|+.+..-++|.|+||+|||+++..+|... +.+.+.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666669999999999999999988753 445555553
No 489
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.20 E-value=0.0021 Score=67.07 Aligned_cols=36 Identities=33% Similarity=0.535 Sum_probs=30.7
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceEEEeCccc
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGPEL 501 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i~v~~~~l 501 (757)
..++|.||+|||||++++.||..++..++.++.-.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 358999999999999999999999988887765443
No 490
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.20 E-value=0.0025 Score=63.00 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=25.6
Q ss_pred CceeeecCCCCChhHHHHHHHHHhCCceE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANECQANFI 494 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~~~~~i 494 (757)
.-|+|.|||||||||+++.||..++..++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 45899999999999999999999986554
No 491
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.19 E-value=0.0042 Score=70.65 Aligned_cols=97 Identities=21% Similarity=0.314 Sum_probs=54.5
Q ss_pred CceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcccc----ccccCchhHHHHHHHHHH---------HhCCCeEEE
Q 004384 466 KGVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPELL----TMWFGESEANVREIFDKA---------RQSAPCVLF 529 (757)
Q Consensus 466 ~gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~l~----~~~~g~~e~~i~~lf~~a---------~~~~p~il~ 529 (757)
+.+++.||||||||+++.+++..+ +.+.+.+....-. ....|.....+..++... ......+++
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlI 284 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLI 284 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEE
Confidence 458999999999999999998754 3444433221110 001111112233333111 112357999
Q ss_pred EecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCC
Q 004384 530 FDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNR 579 (757)
Q Consensus 530 iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~ 579 (757)
+||+..+. ...+..|+..+. ...+++++|-.+.
T Consensus 285 IDEasml~--------------~~~~~~Ll~~~~---~~~~lilvGD~~Q 317 (574)
T 3e1s_A 285 VDEVSMMG--------------DALMLSLLAAVP---PGARVLLVGDTDQ 317 (574)
T ss_dssp ECCGGGCC--------------HHHHHHHHTTSC---TTCEEEEEECTTS
T ss_pred EcCccCCC--------------HHHHHHHHHhCc---CCCEEEEEecccc
Confidence 99987652 345556655443 4567888886655
No 492
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.19 E-value=0.0047 Score=59.11 Aligned_cols=36 Identities=33% Similarity=0.363 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHhC---CeEEEEec
Q 004384 190 KPPKGILLYGPPGSGKTLIARAVANETG---AFFFCING 225 (757)
Q Consensus 190 ~~~~~vLL~Gp~GtGKTtLar~la~~l~---~~~~~v~~ 225 (757)
.++..++|.|++||||||+++.|+..++ ..+..+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 4567799999999999999999998874 33445554
No 493
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.19 E-value=0.0029 Score=61.72 Aligned_cols=27 Identities=26% Similarity=0.144 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCC
Q 004384 192 PKGILLYGPPGSGKTLIARAVANETGA 218 (757)
Q Consensus 192 ~~~vLL~Gp~GtGKTtLar~la~~l~~ 218 (757)
+..|+|.|+|||||||+++.|+..++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 456999999999999999999998876
No 494
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.18 E-value=0.0052 Score=73.18 Aligned_cols=108 Identities=12% Similarity=0.117 Sum_probs=54.5
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh-----CC----ceEEE----------eCccccccccCchhHHHHHHHHHHH-hCC
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC-----QA----NFISV----------KGPELLTMWFGESEANVREIFDKAR-QSA 524 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~-----~~----~~i~v----------~~~~l~~~~~g~~e~~i~~lf~~a~-~~~ 524 (757)
..-++|.||||+||||+.+.++... +. ....+ ...+......+......+++-..++ ...
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 3448999999999999999987532 21 01111 1111111111111111222222221 467
Q ss_pred CeEEEEecccchhcccCCCCCCCCcchHHHHHHHHHhhcCCCCCCeEEEEeeCCCCCCCC
Q 004384 525 PCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIID 584 (757)
Q Consensus 525 p~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~v~vi~tTn~~~~ld 584 (757)
|+++++||.-+-... .....+...++..+-. ..+..+|.+|+..+..+
T Consensus 753 p~LlLLDEP~~GlD~---------~~~~~i~~~il~~L~~---~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 753 QSLVILDELGRGTST---------HDGIAIAYATLEYFIR---DVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp TCEEEEESTTTTSCH---------HHHHHHHHHHHHHHHH---TTCCEEEEECSCGGGGG
T ss_pred CCEEEEeCCCCCCCH---------HHHHHHHHHHHHHHHH---hcCCeEEEEeCcHHHHH
Confidence 899999998663221 1223444456655521 12346788888876554
No 495
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.18 E-value=0.004 Score=60.01 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=26.1
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEe
Q 004384 194 GILLYGPPGSGKTLIARAVANET---GAFFFCIN 224 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~ 224 (757)
-|.|.|++||||||+++.|+..+ +..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 38999999999999999999988 87776553
No 496
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.17 E-value=0.0037 Score=66.45 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=26.6
Q ss_pred hCCCCCceEEEEcCCCCCHHHHHHHHHHHh
Q 004384 187 IGVKPPKGILLYGPPGSGKTLIARAVANET 216 (757)
Q Consensus 187 l~i~~~~~vLL~Gp~GtGKTtLar~la~~l 216 (757)
+.+.++..++|+||+|+||||+++.||+.+
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 345678889999999999999999999976
No 497
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.17 E-value=0.028 Score=59.07 Aligned_cols=47 Identities=15% Similarity=0.065 Sum_probs=34.4
Q ss_pred cChhhHhhh-CCCCCceEEEEcCCCCCHHHHHHHHHHHh---CCeEEEEec
Q 004384 179 RHPQLFKSI-GVKPPKGILLYGPPGSGKTLIARAVANET---GAFFFCING 225 (757)
Q Consensus 179 ~~~~~~~~l-~i~~~~~vLL~Gp~GtGKTtLar~la~~l---~~~~~~v~~ 225 (757)
.++.+-+-+ |+.++.-++|.|+||+|||+|+..+|... +.++..++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344443333 68899999999999999999999987663 455555543
No 498
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.17 E-value=0.0027 Score=59.21 Aligned_cols=25 Identities=28% Similarity=0.389 Sum_probs=22.3
Q ss_pred CCceeeecCCCCChhHHHHHHHHHh
Q 004384 465 SKGVLFYGPPGCGKTLLAKAIANEC 489 (757)
Q Consensus 465 ~~gilL~GppGtGKT~la~~la~~~ 489 (757)
..-+.|.||+|+|||||++++++.+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3348999999999999999999987
No 499
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.17 E-value=0.0029 Score=60.14 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=29.2
Q ss_pred ceeeecCCCCChhHHHHHHHHHh---CCceEEEeCcc
Q 004384 467 GVLFYGPPGCGKTLLAKAIANEC---QANFISVKGPE 500 (757)
Q Consensus 467 gilL~GppGtGKT~la~~la~~~---~~~~i~v~~~~ 500 (757)
-+.|.|++||||||+++.++..+ +.+++.+++..
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 48899999999999999999987 88888776543
No 500
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.16 E-value=0.0022 Score=61.61 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Q 004384 194 GILLYGPPGSGKTLIARAVANETG 217 (757)
Q Consensus 194 ~vLL~Gp~GtGKTtLar~la~~l~ 217 (757)
.|+|.|+|||||||+++.|+..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876
Done!