Query 004385
Match_columns 757
No_of_seqs 228 out of 2022
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 23:33:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 3E-90 1E-94 800.5 45.2 596 14-724 2-614 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 3.4E-78 1.2E-82 695.2 42.7 528 14-701 2-543 (551)
3 2vl7_A XPD; helicase, unknown 100.0 3.8E-71 1.3E-75 634.2 40.1 518 12-692 4-532 (540)
4 1xti_A Probable ATP-dependent 99.8 1.1E-17 3.8E-22 183.5 28.6 75 12-91 26-100 (391)
5 3pey_A ATP-dependent RNA helic 99.8 2.4E-17 8.4E-22 180.7 27.7 76 12-90 23-98 (395)
6 1s2m_A Putative ATP-dependent 99.8 5.9E-17 2E-21 178.4 25.9 75 12-91 39-113 (400)
7 1hv8_A Putative ATP-dependent 99.8 1.1E-16 3.7E-21 173.8 26.6 75 12-91 24-98 (367)
8 3sqw_A ATP-dependent RNA helic 99.8 1.4E-16 4.9E-21 184.2 29.1 78 11-91 38-119 (579)
9 2db3_A ATP-dependent RNA helic 99.8 1.9E-16 6.6E-21 176.4 28.9 75 12-91 74-153 (434)
10 3i5x_A ATP-dependent RNA helic 99.7 5.8E-16 2E-20 178.6 29.3 79 11-92 89-171 (563)
11 2i4i_A ATP-dependent RNA helic 99.7 2.6E-16 8.8E-21 174.3 24.6 75 12-91 33-125 (417)
12 2j0s_A ATP-dependent RNA helic 99.7 7.2E-16 2.5E-20 170.3 27.2 75 12-91 55-129 (410)
13 3fht_A ATP-dependent RNA helic 99.7 4.1E-16 1.4E-20 172.1 23.0 78 11-91 42-119 (412)
14 2v1x_A ATP-dependent DNA helic 99.7 3.9E-15 1.3E-19 171.4 29.1 70 10-90 38-107 (591)
15 2z0m_A 337AA long hypothetical 99.7 2.3E-15 7.7E-20 161.3 24.3 70 11-91 11-80 (337)
16 3eiq_A Eukaryotic initiation f 99.7 1.4E-15 4.7E-20 168.1 22.9 76 11-91 57-132 (414)
17 3oiy_A Reverse gyrase helicase 99.7 5.8E-15 2E-19 163.5 27.0 72 10-90 16-87 (414)
18 1oyw_A RECQ helicase, ATP-depe 99.7 4.9E-15 1.7E-19 168.6 25.1 71 9-90 18-88 (523)
19 3fho_A ATP-dependent RNA helic 99.6 4.8E-16 1.6E-20 176.7 12.1 76 12-90 137-212 (508)
20 1wp9_A ATP-dependent RNA helic 99.6 5.8E-14 2E-18 157.7 27.6 66 17-90 10-75 (494)
21 2va8_A SSO2462, SKI2-type heli 99.6 1.4E-13 4.8E-18 163.2 27.7 73 12-90 26-98 (715)
22 2eyq_A TRCF, transcription-rep 99.5 6.8E-13 2.3E-17 163.5 28.7 77 9-90 597-675 (1151)
23 2p6r_A Afuhel308 helicase; pro 99.5 9.8E-14 3.3E-18 164.1 20.6 71 12-90 21-91 (702)
24 3l9o_A ATP-dependent RNA helic 99.5 8.5E-13 2.9E-17 161.6 28.1 75 7-90 176-250 (1108)
25 4a4z_A Antiviral helicase SKI2 99.5 2.3E-13 7.8E-18 165.2 22.1 74 8-90 32-105 (997)
26 2xgj_A ATP-dependent RNA helic 99.5 1.5E-12 5.1E-17 158.1 28.2 73 9-90 80-152 (1010)
27 2zj8_A DNA helicase, putative 99.5 4.6E-13 1.6E-17 158.8 20.5 73 12-90 19-91 (720)
28 2oca_A DAR protein, ATP-depend 99.5 9.8E-13 3.4E-17 149.6 22.3 70 13-90 111-180 (510)
29 3h1t_A Type I site-specific re 99.5 8E-12 2.7E-16 144.7 28.2 71 17-88 179-257 (590)
30 1qde_A EIF4A, translation init 99.5 1.2E-13 3.9E-18 139.4 11.0 76 11-91 31-106 (224)
31 3iuy_A Probable ATP-dependent 99.5 1.9E-13 6.6E-18 138.2 11.7 74 12-90 38-117 (228)
32 3fe2_A Probable ATP-dependent 99.5 2.2E-13 7.7E-18 139.1 11.9 76 11-91 46-126 (242)
33 1vec_A ATP-dependent RNA helic 99.5 1.7E-13 5.9E-18 136.1 10.7 76 11-91 20-95 (206)
34 3dkp_A Probable ATP-dependent 99.4 1.3E-13 4.6E-18 141.0 8.6 75 12-91 47-122 (245)
35 1t6n_A Probable ATP-dependent 99.4 3.1E-13 1.1E-17 135.8 10.9 75 12-91 32-106 (220)
36 4ddu_A Reverse gyrase; topoiso 99.4 5.4E-12 1.8E-16 154.5 23.7 71 11-90 74-144 (1104)
37 2oxc_A Probable ATP-dependent 99.4 4.1E-13 1.4E-17 136.0 11.4 76 11-91 41-116 (230)
38 1gku_B Reverse gyrase, TOP-RG; 99.4 1.6E-12 5.4E-17 159.2 18.5 71 11-91 53-123 (1054)
39 3ber_A Probable ATP-dependent 99.4 6.2E-13 2.1E-17 136.5 12.6 76 11-91 60-135 (249)
40 1q0u_A Bstdead; DEAD protein, 99.4 2.8E-13 9.4E-18 136.2 9.5 76 11-91 21-96 (219)
41 1wrb_A DJVLGB; RNA helicase, D 99.4 5.9E-13 2E-17 136.9 11.9 75 12-91 41-124 (253)
42 4f92_B U5 small nuclear ribonu 99.4 1.6E-11 5.6E-16 155.8 26.5 72 14-90 924-995 (1724)
43 2pl3_A Probable ATP-dependent 99.4 9.1E-13 3.1E-17 134.0 12.0 74 12-90 43-120 (236)
44 4f92_B U5 small nuclear ribonu 99.4 1.3E-11 4.5E-16 156.6 25.1 77 11-91 73-158 (1724)
45 2gxq_A Heat resistant RNA depe 99.4 1E-12 3.5E-17 130.6 11.4 74 12-90 19-95 (207)
46 3bor_A Human initiation factor 99.4 9E-13 3.1E-17 134.2 9.9 76 11-91 47-122 (237)
47 3ly5_A ATP-dependent RNA helic 99.3 3E-12 1E-16 132.4 11.0 75 12-91 72-150 (262)
48 1fuu_A Yeast initiation factor 99.3 3E-12 1E-16 140.2 10.5 75 12-91 39-113 (394)
49 3fmo_B ATP-dependent RNA helic 99.3 6.1E-12 2.1E-16 132.7 8.8 77 12-91 110-186 (300)
50 2jlq_A Serine protease subunit 99.2 1.6E-10 5.5E-15 129.0 19.3 118 529-679 187-308 (451)
51 3b6e_A Interferon-induced heli 99.2 2.7E-11 9.4E-16 120.8 11.2 73 12-90 30-106 (216)
52 3tbk_A RIG-I helicase domain; 99.2 4E-11 1.4E-15 137.3 12.8 73 13-91 2-76 (555)
53 4a2p_A RIG-I, retinoic acid in 99.2 7.1E-11 2.4E-15 135.4 12.4 74 12-91 4-79 (556)
54 2v6i_A RNA helicase; membrane, 99.2 8.6E-10 2.9E-14 122.3 20.2 119 529-679 170-288 (431)
55 2whx_A Serine protease/ntpase/ 99.2 6.1E-10 2.1E-14 128.6 19.3 120 529-679 354-475 (618)
56 2ykg_A Probable ATP-dependent 99.1 1.4E-10 4.6E-15 137.1 13.5 77 10-91 7-85 (696)
57 1gm5_A RECG; helicase, replica 99.1 1.7E-10 5.9E-15 135.8 13.4 77 10-91 363-441 (780)
58 4a2q_A RIG-I, retinoic acid in 99.1 1.9E-10 6.6E-15 137.7 12.3 74 13-91 245-320 (797)
59 3fmp_B ATP-dependent RNA helic 99.1 5.7E-11 1.9E-15 133.9 6.9 77 12-91 110-186 (479)
60 4a2w_A RIG-I, retinoic acid in 99.0 3E-10 1E-14 137.9 10.0 73 14-91 246-320 (936)
61 4gl2_A Interferon-induced heli 99.0 1.6E-10 5.6E-15 136.5 6.5 73 13-91 5-81 (699)
62 2xau_A PRE-mRNA-splicing facto 99.0 1.1E-08 3.7E-13 121.2 21.9 146 513-678 285-439 (773)
63 1rif_A DAR protein, DNA helica 99.0 1.1E-09 3.9E-14 114.2 11.8 69 14-90 112-180 (282)
64 2fz4_A DNA repair protein RAD2 98.9 2.6E-09 9E-14 108.4 10.9 67 11-89 89-155 (237)
65 2fwr_A DNA repair protein RAD2 98.9 2.1E-09 7.1E-14 120.8 10.0 68 10-89 88-155 (472)
66 1nkt_A Preprotein translocase 98.9 4.2E-07 1.4E-11 105.6 27.0 69 13-92 109-177 (922)
67 3jux_A Protein translocase sub 98.8 4.3E-07 1.5E-11 103.3 24.6 152 439-622 399-558 (822)
68 1z63_A Helicase of the SNF2/RA 98.7 5.7E-08 2E-12 109.8 13.0 71 17-90 38-108 (500)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.7 3.7E-08 1.3E-12 119.2 11.2 72 17-90 272-353 (1038)
70 3dmq_A RNA polymerase-associat 98.5 1.5E-07 5.2E-12 114.4 8.8 72 13-90 151-222 (968)
71 1tf5_A Preprotein translocase 98.5 2.2E-07 7.5E-12 107.9 9.6 70 12-92 80-149 (844)
72 3mwy_W Chromo domain-containin 98.5 3.2E-07 1.1E-11 109.6 11.2 73 16-90 236-308 (800)
73 2fsf_A Preprotein translocase 98.5 3.2E-07 1.1E-11 106.3 10.0 66 17-92 75-140 (853)
74 3llm_A ATP-dependent RNA helic 98.4 3.4E-07 1.1E-11 92.6 8.8 69 17-89 62-131 (235)
75 2ipc_A Preprotein translocase 98.3 9.9E-07 3.4E-11 102.2 10.4 70 12-92 76-145 (997)
76 1z3i_X Similar to RAD54-like; 98.3 1.3E-06 4.4E-11 101.7 10.8 74 16-91 55-137 (644)
77 4b3f_X DNA-binding protein smu 98.1 1.7E-05 5.7E-10 92.4 12.6 67 16-89 189-255 (646)
78 3o8b_A HCV NS3 protease/helica 97.9 6.5E-06 2.2E-10 94.5 5.0 55 28-89 225-279 (666)
79 2hjv_A ATP-dependent RNA helic 97.8 0.00023 7.8E-09 67.2 13.8 105 529-678 34-139 (163)
80 2gk6_A Regulator of nonsense t 97.8 9.2E-05 3.2E-09 85.7 13.1 67 16-89 180-246 (624)
81 2z83_A Helicase/nucleoside tri 97.8 6.1E-06 2.1E-10 92.0 2.5 57 29-88 15-71 (459)
82 2p6n_A ATP-dependent RNA helic 97.8 0.00014 4.8E-09 70.6 11.8 114 521-679 45-159 (191)
83 2rb4_A ATP-dependent RNA helic 97.8 0.00022 7.4E-09 68.2 12.9 116 522-677 25-142 (175)
84 3eaq_A Heat resistant RNA depe 97.7 0.00027 9.3E-09 69.8 13.3 106 529-680 30-137 (212)
85 1yks_A Genome polyprotein [con 97.7 9.8E-06 3.3E-10 89.8 2.5 56 31-89 4-59 (440)
86 1fuk_A Eukaryotic initiation f 97.7 0.00026 8.9E-09 66.9 12.1 80 529-623 29-109 (165)
87 2wv9_A Flavivirin protease NS2 97.7 3.2E-06 1.1E-10 98.2 -2.3 119 529-678 409-529 (673)
88 2jgn_A DBX, DDX3, ATP-dependen 97.6 0.00046 1.6E-08 66.6 12.3 105 530-679 46-151 (185)
89 1t5i_A C_terminal domain of A 97.5 0.00036 1.2E-08 66.5 10.4 80 529-623 30-110 (172)
90 2wjy_A Regulator of nonsense t 97.5 0.00047 1.6E-08 81.6 13.3 67 16-89 356-422 (800)
91 2xzl_A ATP-dependent helicase 97.5 0.00066 2.3E-08 80.4 13.5 67 16-89 360-426 (802)
92 3i32_A Heat resistant RNA depe 97.2 0.0022 7.6E-08 66.7 12.9 106 529-680 27-134 (300)
93 2yjt_D ATP-dependent RNA helic 96.2 8E-05 2.7E-09 70.9 0.0 79 530-623 30-109 (170)
94 1fuu_A Yeast initiation factor 97.1 0.0001 3.4E-09 79.9 0.7 106 529-679 258-364 (394)
95 1yks_A Genome polyprotein [con 96.9 0.0026 9.1E-08 70.1 10.4 76 529-623 176-251 (440)
96 3fmp_B ATP-dependent RNA helic 96.9 0.00022 7.5E-09 79.8 1.5 121 522-681 324-446 (479)
97 3rc3_A ATP-dependent RNA helic 96.9 0.00072 2.5E-08 78.3 5.3 122 530-681 320-444 (677)
98 3upu_A ATP-dependent DNA helic 96.7 0.0042 1.4E-07 68.9 10.2 68 12-82 21-89 (459)
99 4gl2_A Interferon-induced heli 96.5 0.0054 1.9E-07 71.8 9.5 85 530-623 400-493 (699)
100 2fwr_A DNA repair protein RAD2 96.3 0.0051 1.7E-07 68.4 7.3 94 529-671 348-441 (472)
101 2z83_A Helicase/nucleoside tri 96.2 0.0062 2.1E-07 67.5 7.3 122 529-680 189-312 (459)
102 2d7d_A Uvrabc system protein B 96.1 0.036 1.2E-06 64.2 13.4 76 8-91 5-81 (661)
103 1z3i_X Similar to RAD54-like; 96.0 0.18 6.2E-06 58.2 18.7 151 528-747 414-568 (644)
104 1w36_D RECD, exodeoxyribonucle 96.0 0.013 4.4E-07 67.4 8.8 67 18-90 151-219 (608)
105 3tbk_A RIG-I helicase domain; 95.9 0.019 6.5E-07 64.8 9.7 99 516-624 374-482 (555)
106 1c4o_A DNA nucleotide excision 95.8 0.044 1.5E-06 63.6 12.3 70 13-90 6-76 (664)
107 3rc3_A ATP-dependent RNA helic 95.8 0.03 1E-06 64.8 10.7 70 11-90 124-202 (677)
108 4a2p_A RIG-I, retinoic acid in 95.8 0.019 6.4E-07 65.0 8.9 98 516-623 375-482 (556)
109 2ykg_A Probable ATP-dependent 95.4 0.036 1.2E-06 64.7 9.6 98 516-623 383-490 (696)
110 2wv9_A Flavivirin protease NS2 95.3 0.056 1.9E-06 62.6 10.6 71 16-89 215-292 (673)
111 1z5z_A Helicase of the SNF2/RA 95.2 0.17 5.9E-06 51.5 13.1 93 517-624 100-195 (271)
112 1c4o_A DNA nucleotide excision 95.1 0.047 1.6E-06 63.3 9.4 109 529-680 438-549 (664)
113 4a2w_A RIG-I, retinoic acid in 95.0 0.064 2.2E-06 64.8 10.6 98 516-623 616-723 (936)
114 1z63_A Helicase of the SNF2/RA 95.0 0.13 4.5E-06 57.3 12.5 114 517-675 329-445 (500)
115 3lfu_A DNA helicase II; SF1 he 94.6 0.053 1.8E-06 62.7 8.1 68 16-91 9-78 (647)
116 4a2q_A RIG-I, retinoic acid in 94.6 0.083 2.8E-06 62.7 9.8 98 516-623 616-723 (797)
117 3mwy_W Chromo domain-containin 94.4 0.14 4.8E-06 60.7 11.4 105 528-676 570-677 (800)
118 3dmq_A RNA polymerase-associat 94.4 0.17 5.7E-06 61.4 12.1 100 528-672 501-604 (968)
119 1gm5_A RECG; helicase, replica 94.4 0.035 1.2E-06 65.3 5.8 108 529-678 577-693 (780)
120 2d7d_A Uvrabc system protein B 93.6 0.17 5.6E-06 58.7 9.5 109 529-680 444-555 (661)
121 3e1s_A Exodeoxyribonuclease V, 92.9 0.23 7.7E-06 56.4 9.0 64 13-85 187-250 (574)
122 1uaa_A REP helicase, protein ( 92.1 0.18 6.2E-06 58.6 7.0 67 17-90 3-70 (673)
123 2w58_A DNAI, primosome compone 92.0 0.32 1.1E-05 46.7 7.5 34 19-52 32-71 (202)
124 1pjr_A PCRA; DNA repair, DNA r 91.7 0.3 1E-05 57.1 8.3 68 16-91 11-80 (724)
125 2o0j_A Terminase, DNA packagin 91.5 0.62 2.1E-05 49.8 9.8 73 12-91 160-232 (385)
126 3cpe_A Terminase, DNA packagin 91.2 0.62 2.1E-05 53.1 10.0 73 12-91 160-232 (592)
127 3co5_A Putative two-component 91.1 0.15 5E-06 46.4 3.8 28 24-51 16-43 (143)
128 3o8b_A HCV NS3 protease/helica 91.1 1.3 4.3E-05 50.9 12.3 72 529-622 395-466 (666)
129 3n70_A Transport activator; si 91.0 0.18 6.1E-06 45.9 4.3 29 23-51 12-40 (145)
130 3ec2_A DNA replication protein 91.0 0.39 1.3E-05 45.2 6.8 35 18-52 16-55 (180)
131 3nbx_X ATPase RAVA; AAA+ ATPas 90.2 0.16 5.4E-06 56.5 3.8 34 18-51 24-57 (500)
132 2r44_A Uncharacterized protein 90.1 0.18 6.3E-06 52.8 4.1 35 18-52 29-63 (331)
133 2fsf_A Preprotein translocase 90.1 2.5 8.5E-05 49.3 13.6 139 440-610 367-507 (853)
134 2qgz_A Helicase loader, putati 89.0 0.94 3.2E-05 46.9 8.4 34 19-52 131-169 (308)
135 1a5t_A Delta prime, HOLB; zinc 88.9 0.41 1.4E-05 50.3 5.6 37 17-53 3-42 (334)
136 1tf5_A Preprotein translocase 88.4 6.7 0.00023 45.8 15.5 150 441-622 359-516 (844)
137 2w00_A HSDR, R.ECOR124I; ATP-b 88.3 2.2 7.7E-05 51.6 12.2 23 531-553 538-560 (1038)
138 3u4q_A ATP-dependent helicase/ 87.0 0.75 2.6E-05 57.2 7.1 65 17-89 11-79 (1232)
139 3hws_A ATP-dependent CLP prote 87.0 0.37 1.3E-05 51.2 3.8 32 20-51 19-67 (363)
140 1ofh_A ATP-dependent HSL prote 86.9 0.39 1.3E-05 49.4 3.9 34 19-52 18-67 (310)
141 1jbk_A CLPB protein; beta barr 86.7 0.48 1.6E-05 44.3 4.1 34 19-52 25-60 (195)
142 3te6_A Regulatory protein SIR3 86.5 0.55 1.9E-05 48.8 4.7 36 18-53 25-63 (318)
143 2chg_A Replication factor C sm 86.4 1.4 4.9E-05 42.1 7.5 33 20-52 21-55 (226)
144 1njg_A DNA polymerase III subu 86.2 0.46 1.6E-05 46.4 3.8 32 20-51 27-61 (250)
145 2p65_A Hypothetical protein PF 85.9 0.47 1.6E-05 44.3 3.6 34 19-52 25-60 (187)
146 2b8t_A Thymidine kinase; deoxy 85.3 0.72 2.5E-05 45.3 4.7 41 33-77 10-50 (223)
147 2bjv_A PSP operon transcriptio 85.3 0.62 2.1E-05 46.9 4.3 30 22-51 16-45 (265)
148 1iqp_A RFCS; clamp loader, ext 85.0 0.66 2.3E-05 48.0 4.5 35 19-53 28-64 (327)
149 3bos_A Putative DNA replicatio 84.4 2.1 7.2E-05 41.7 7.7 33 20-52 35-69 (242)
150 4fcw_A Chaperone protein CLPB; 84.4 0.53 1.8E-05 48.5 3.4 35 19-53 20-65 (311)
151 2gno_A DNA polymerase III, gam 82.9 3.3 0.00011 42.7 8.7 36 20-55 1-38 (305)
152 1l8q_A Chromosomal replication 82.9 3.3 0.00011 42.8 8.8 64 9-76 5-74 (324)
153 1sxj_C Activator 1 40 kDa subu 82.9 0.94 3.2E-05 47.5 4.6 35 20-54 29-65 (340)
154 3pfi_A Holliday junction ATP-d 82.7 0.66 2.3E-05 48.5 3.3 34 19-52 32-72 (338)
155 3uk6_A RUVB-like 2; hexameric 82.6 1.6 5.5E-05 46.0 6.4 35 19-53 50-88 (368)
156 3syl_A Protein CBBX; photosynt 82.5 1.7 6E-05 44.5 6.5 18 36-53 68-85 (309)
157 2qby_B CDC6 homolog 3, cell di 81.8 2.8 9.7E-05 44.3 8.0 19 35-53 45-63 (384)
158 1sxj_D Activator 1 41 kDa subu 81.8 0.48 1.7E-05 49.7 1.9 35 19-53 40-76 (353)
159 1ojl_A Transcriptional regulat 80.8 1.1 3.6E-05 46.4 4.0 29 23-51 13-41 (304)
160 1g8p_A Magnesium-chelatase 38 79.7 0.65 2.2E-05 48.7 2.0 39 12-51 21-61 (350)
161 3b9p_A CG5977-PA, isoform A; A 79.7 1.2 4E-05 45.6 3.9 18 35-52 54-71 (297)
162 3h4m_A Proteasome-activating n 79.2 0.91 3.1E-05 46.1 2.8 18 35-52 51-68 (285)
163 1jr3_A DNA polymerase III subu 77.8 1.7 5.8E-05 45.8 4.6 34 19-52 19-55 (373)
164 2zts_A Putative uncharacterize 77.5 1.9 6.5E-05 42.4 4.6 50 33-86 28-77 (251)
165 2chq_A Replication factor C sm 77.2 1.1 3.7E-05 46.1 2.7 34 20-53 21-56 (319)
166 1lv7_A FTSH; alpha/beta domain 77.0 2.1 7.2E-05 42.6 4.7 34 18-51 17-61 (257)
167 3pvs_A Replication-associated 76.9 1.2 4.2E-05 48.6 3.2 35 18-52 28-67 (447)
168 1hqc_A RUVB; extended AAA-ATPa 76.7 1.2 4E-05 46.1 2.8 33 20-52 16-55 (324)
169 2qz4_A Paraplegin; AAA+, SPG7, 76.4 2.6 8.9E-05 41.8 5.3 35 18-52 11-56 (262)
170 2c9o_A RUVB-like 1; hexameric 76.2 2.9 0.0001 45.7 6.0 33 21-53 45-81 (456)
171 1um8_A ATP-dependent CLP prote 76.0 2 6.8E-05 45.6 4.5 18 35-52 72-89 (376)
172 2dr3_A UPF0273 protein PH0284; 75.4 2.7 9.4E-05 41.2 5.1 39 32-74 20-58 (247)
173 3k1j_A LON protease, ATP-depen 75.3 2 7E-05 48.9 4.6 35 19-53 44-78 (604)
174 3pxg_A Negative regulator of g 75.0 1.7 5.8E-05 47.9 3.7 35 19-53 183-219 (468)
175 3d8b_A Fidgetin-like protein 1 75.0 1.9 6.5E-05 45.6 3.9 33 20-52 88-134 (357)
176 3cf0_A Transitional endoplasmi 74.8 2.3 7.9E-05 43.6 4.5 18 35-52 49-66 (301)
177 3pxi_A Negative regulator of g 74.1 1.8 6.2E-05 50.8 3.9 34 20-53 495-539 (758)
178 1xx6_A Thymidine kinase; NESG, 74.1 3 0.0001 39.8 4.7 39 35-77 8-46 (191)
179 1in4_A RUVB, holliday junction 73.2 2.3 7.8E-05 44.4 4.0 33 20-52 29-68 (334)
180 1tue_A Replication protein E1; 73.2 3.4 0.00012 39.8 4.8 30 25-54 45-77 (212)
181 3eie_A Vacuolar protein sortin 73.1 1.9 6.6E-05 44.7 3.4 35 18-52 20-68 (322)
182 3bh0_A DNAB-like replicative h 72.8 2.6 8.8E-05 43.7 4.2 42 30-75 63-104 (315)
183 3vfd_A Spastin; ATPase, microt 72.6 1.9 6.6E-05 46.0 3.3 34 19-52 118-165 (389)
184 2z4s_A Chromosomal replication 72.5 7.1 0.00024 42.4 7.9 39 36-76 131-169 (440)
185 2orw_A Thymidine kinase; TMTK, 72.3 4.4 0.00015 38.2 5.4 39 35-77 3-41 (184)
186 1sxj_B Activator 1 37 kDa subu 72.1 2.5 8.7E-05 43.3 4.0 34 20-53 25-60 (323)
187 1fnn_A CDC6P, cell division co 71.8 1.8 6.3E-05 45.8 2.9 34 19-52 20-61 (389)
188 2pt7_A CAG-ALFA; ATPase, prote 71.4 2.3 7.9E-05 44.4 3.5 27 24-50 160-186 (330)
189 1sxj_A Activator 1 95 kDa subu 71.3 2.9 9.9E-05 46.6 4.5 34 20-53 43-95 (516)
190 3bgw_A DNAB-like replicative h 71.1 2.8 9.6E-05 45.7 4.2 42 31-76 193-234 (444)
191 2v1u_A Cell division control p 70.9 1.4 4.9E-05 46.5 1.8 34 19-52 22-61 (387)
192 2gza_A Type IV secretion syste 70.5 4.5 0.00015 42.7 5.5 26 25-50 165-190 (361)
193 4a1f_A DNAB helicase, replicat 70.1 3.2 0.00011 43.4 4.2 46 27-76 38-83 (338)
194 1d2n_A N-ethylmaleimide-sensit 69.9 4.1 0.00014 40.8 4.9 17 36-52 65-81 (272)
195 1g41_A Heat shock protein HSLU 69.8 3 0.0001 45.3 4.0 32 20-51 19-66 (444)
196 1xwi_A SKD1 protein; VPS4B, AA 69.4 3 0.0001 43.3 3.9 16 36-51 46-61 (322)
197 2qby_A CDC6 homolog 1, cell di 69.4 5 0.00017 42.1 5.7 35 19-53 23-63 (386)
198 1r6b_X CLPA protein; AAA+, N-t 69.1 2.3 7.9E-05 49.9 3.2 33 20-52 462-505 (758)
199 2q6t_A DNAB replication FORK h 69.0 3 0.0001 45.5 3.9 46 27-75 192-237 (444)
200 2ius_A DNA translocase FTSK; n 69.0 5.3 0.00018 44.2 5.8 44 34-77 166-209 (512)
201 4b4t_L 26S protease subunit RP 69.0 4.6 0.00016 43.8 5.2 22 36-59 216-237 (437)
202 2qp9_X Vacuolar protein sortin 68.9 2.4 8.1E-05 44.8 2.9 17 36-52 85-101 (355)
203 3u61_B DNA polymerase accessor 68.8 3.3 0.00011 42.8 4.0 52 19-77 29-83 (324)
204 1p9r_A General secretion pathw 68.6 5.2 0.00018 43.2 5.6 32 18-51 152-183 (418)
205 4b4t_K 26S protease regulatory 68.5 4.6 0.00016 43.7 5.1 22 36-59 207-228 (428)
206 2r6a_A DNAB helicase, replicat 68.4 3.2 0.00011 45.4 4.0 54 28-85 196-249 (454)
207 3f9v_A Minichromosome maintena 68.1 1.5 5E-05 50.0 1.1 32 20-51 299-343 (595)
208 3pxi_A Negative regulator of g 67.8 2.9 0.0001 49.0 3.7 36 18-53 182-219 (758)
209 2r62_A Cell division protease 67.6 2.6 8.7E-05 42.2 2.8 17 36-52 45-61 (268)
210 1qvr_A CLPB protein; coiled co 67.5 2.1 7.1E-05 51.0 2.4 33 20-52 562-605 (854)
211 3t15_A Ribulose bisphosphate c 67.3 5 0.00017 40.9 4.9 23 36-60 37-59 (293)
212 2oap_1 GSPE-2, type II secreti 67.0 4.2 0.00014 45.1 4.6 29 23-51 248-276 (511)
213 1e9r_A Conjugal transfer prote 66.3 5.1 0.00017 43.4 5.0 39 35-79 53-93 (437)
214 3hu3_A Transitional endoplasmi 66.3 2.6 9E-05 46.6 2.7 17 36-52 239-255 (489)
215 1cr0_A DNA primase/helicase; R 65.7 4 0.00014 41.5 3.9 48 25-75 25-72 (296)
216 2zan_A Vacuolar protein sortin 64.7 4.1 0.00014 44.4 3.8 33 20-52 138-184 (444)
217 3vkw_A Replicase large subunit 64.5 5 0.00017 43.5 4.4 44 36-88 162-205 (446)
218 2qen_A Walker-type ATPase; unk 63.8 4.8 0.00016 41.7 4.1 28 24-51 20-47 (350)
219 1u0j_A DNA replication protein 63.5 7.3 0.00025 39.1 5.1 17 37-53 106-122 (267)
220 1q57_A DNA primase/helicase; d 62.7 3.3 0.00011 45.9 2.7 42 31-75 238-279 (503)
221 2w0m_A SSO2452; RECA, SSPF, un 62.4 7.8 0.00027 37.3 5.1 40 31-74 19-58 (235)
222 2kjq_A DNAA-related protein; s 62.4 6.2 0.00021 35.7 4.0 18 34-51 35-52 (149)
223 1ixz_A ATP-dependent metallopr 62.2 7.9 0.00027 38.2 5.2 34 18-51 21-65 (254)
224 4akg_A Glutathione S-transfera 62.1 6.4 0.00022 52.3 5.5 34 18-51 1250-1283(2695)
225 1w5s_A Origin recognition comp 62.1 3.6 0.00012 43.9 2.8 35 18-52 27-69 (412)
226 2cvh_A DNA repair and recombin 61.1 4.1 0.00014 39.1 2.8 24 31-54 16-39 (220)
227 1n0w_A DNA repair protein RAD5 61.0 5.9 0.0002 38.6 4.0 25 32-56 21-45 (243)
228 2zpa_A Uncharacterized protein 60.0 4.6 0.00016 46.1 3.2 58 17-83 176-233 (671)
229 4b4t_M 26S protease regulatory 59.8 4.8 0.00016 43.6 3.2 22 36-59 216-237 (434)
230 2iut_A DNA translocase FTSK; n 59.7 10 0.00034 42.5 5.8 43 35-77 214-256 (574)
231 1sxj_E Activator 1 40 kDa subu 59.6 3.4 0.00012 43.1 2.0 34 20-53 18-54 (354)
232 1g5t_A COB(I)alamin adenosyltr 59.6 10 0.00034 36.2 5.0 39 31-73 24-62 (196)
233 4b4t_J 26S protease regulatory 59.3 5.2 0.00018 42.8 3.3 22 36-59 183-204 (405)
234 2j9r_A Thymidine kinase; TK1, 58.3 9.9 0.00034 36.8 4.8 39 35-77 28-66 (214)
235 2r2a_A Uncharacterized protein 58.0 6.4 0.00022 37.7 3.4 18 37-54 7-24 (199)
236 2bwj_A Adenylate kinase 5; pho 57.7 4.5 0.00015 38.1 2.3 24 28-51 5-28 (199)
237 2ce7_A Cell division protein F 57.7 9.1 0.00031 42.0 5.0 17 36-52 50-66 (476)
238 1kgd_A CASK, peripheral plasma 57.5 4.2 0.00014 38.0 2.0 18 34-51 4-21 (180)
239 3b85_A Phosphate starvation-in 57.4 12 0.0004 36.1 5.2 35 14-52 5-39 (208)
240 4akg_A Glutathione S-transfera 57.0 18 0.00063 48.1 8.4 38 18-55 906-943 (2695)
241 2px0_A Flagellar biosynthesis 56.8 10 0.00036 38.6 5.0 37 35-74 105-141 (296)
242 3tr0_A Guanylate kinase, GMP k 55.8 4.1 0.00014 38.6 1.7 19 33-51 5-23 (205)
243 1iy2_A ATP-dependent metallopr 55.5 15 0.00051 36.8 5.9 34 18-51 45-89 (278)
244 1nlf_A Regulatory protein REPA 55.5 18 0.0006 36.3 6.5 27 32-58 27-53 (279)
245 3vkg_A Dynein heavy chain, cyt 55.4 8.7 0.0003 51.7 5.0 34 18-51 1287-1320(3245)
246 3tau_A Guanylate kinase, GMP k 55.3 4.8 0.00016 38.6 2.1 18 34-51 7-24 (208)
247 1ry6_A Internal kinesin; kines 55.1 9.2 0.00031 40.2 4.3 36 18-53 61-103 (360)
248 2z43_A DNA repair and recombin 54.4 8.6 0.00029 39.8 4.0 24 34-57 106-129 (324)
249 4b4t_I 26S protease regulatory 54.1 6.8 0.00023 42.2 3.1 40 18-59 187-238 (437)
250 3ney_A 55 kDa erythrocyte memb 54.0 5.3 0.00018 38.2 2.1 17 34-50 18-34 (197)
251 1r6b_X CLPA protein; AAA+, N-t 53.5 6.9 0.00024 45.8 3.4 34 20-53 190-225 (758)
252 3vaa_A Shikimate kinase, SK; s 53.2 5.4 0.00019 37.8 2.1 33 19-51 8-41 (199)
253 2qor_A Guanylate kinase; phosp 53.0 4.2 0.00014 38.9 1.2 20 31-50 8-27 (204)
254 2fna_A Conserved hypothetical 52.9 3.3 0.00011 43.0 0.5 30 18-52 18-47 (357)
255 2j41_A Guanylate kinase; GMP, 52.6 5 0.00017 38.0 1.7 18 33-50 4-21 (207)
256 4b4t_H 26S protease regulatory 52.5 6.5 0.00022 42.8 2.7 22 36-59 244-265 (467)
257 2eyu_A Twitching motility prot 52.4 4 0.00014 41.0 1.0 20 32-51 22-41 (261)
258 3a8t_A Adenylate isopentenyltr 52.2 6.9 0.00024 40.7 2.8 16 36-51 41-56 (339)
259 2r8r_A Sensor protein; KDPD, P 52.1 19 0.00066 35.1 5.8 37 37-77 8-45 (228)
260 1lvg_A Guanylate kinase, GMP k 51.4 6.1 0.00021 37.6 2.1 18 34-51 3-20 (198)
261 1w4r_A Thymidine kinase; type 50.8 14 0.00048 35.1 4.5 38 35-76 20-57 (195)
262 3lw7_A Adenylate kinase relate 50.8 5.9 0.0002 36.1 1.8 14 37-50 3-16 (179)
263 3exa_A TRNA delta(2)-isopenten 50.7 7.6 0.00026 40.0 2.7 17 35-51 3-19 (322)
264 2qmh_A HPR kinase/phosphorylas 50.6 7.8 0.00027 37.1 2.6 16 36-51 35-50 (205)
265 2dhr_A FTSH; AAA+ protein, hex 50.3 15 0.00051 40.5 5.2 35 18-52 36-81 (499)
266 1kht_A Adenylate kinase; phosp 49.6 6.8 0.00023 36.5 2.1 17 35-51 3-19 (192)
267 1w36_B RECB, exodeoxyribonucle 49.6 19 0.00065 44.4 6.6 48 36-84 17-73 (1180)
268 2i1q_A DNA repair and recombin 49.3 15 0.00052 37.7 4.9 23 35-57 98-120 (322)
269 1u94_A RECA protein, recombina 49.3 20 0.00067 37.7 5.8 41 34-78 62-102 (356)
270 2zr9_A Protein RECA, recombina 49.2 15 0.00053 38.3 5.0 41 33-77 59-99 (349)
271 1v5w_A DMC1, meiotic recombina 49.0 14 0.00046 38.6 4.5 24 34-57 121-144 (343)
272 3trf_A Shikimate kinase, SK; a 48.8 7.2 0.00025 36.2 2.1 17 35-51 5-21 (185)
273 3nwj_A ATSK2; P loop, shikimat 48.1 8.3 0.00028 38.4 2.5 30 22-51 32-64 (250)
274 2l8b_A Protein TRAI, DNA helic 47.9 32 0.0011 32.3 6.2 70 10-83 26-96 (189)
275 3hr8_A Protein RECA; alpha and 47.9 18 0.00061 38.0 5.1 41 34-78 60-100 (356)
276 1ex7_A Guanylate kinase; subst 47.8 7.6 0.00026 36.7 2.1 15 36-50 2-16 (186)
277 1xp8_A RECA protein, recombina 47.8 17 0.00057 38.4 5.0 40 34-77 73-112 (366)
278 2c95_A Adenylate kinase 1; tra 47.6 9 0.00031 35.8 2.6 20 32-51 6-25 (196)
279 2r2a_A Uncharacterized protein 47.4 6.1 0.00021 37.8 1.4 14 227-240 87-100 (199)
280 1z6g_A Guanylate kinase; struc 47.4 7.8 0.00027 37.5 2.2 24 27-50 15-38 (218)
281 1qvr_A CLPB protein; coiled co 47.3 11 0.00036 44.9 3.7 35 19-53 173-209 (854)
282 3io5_A Recombination and repai 47.0 20 0.00068 37.0 5.1 41 37-79 30-70 (333)
283 3kb2_A SPBC2 prophage-derived 46.8 7.8 0.00027 35.3 2.0 15 37-51 3-17 (173)
284 3hjh_A Transcription-repair-co 45.8 27 0.00091 38.3 6.3 50 34-90 13-62 (483)
285 3ice_A Transcription terminati 45.4 15 0.0005 39.1 4.0 48 5-52 136-191 (422)
286 3cm0_A Adenylate kinase; ATP-b 45.4 6.5 0.00022 36.6 1.2 18 34-51 3-20 (186)
287 2v9p_A Replication protein E1; 45.3 8.5 0.00029 39.5 2.1 28 24-51 115-142 (305)
288 3u4q_B ATP-dependent helicase/ 45.1 16 0.00055 45.0 4.9 40 38-78 4-43 (1166)
289 1s96_A Guanylate kinase, GMP k 45.0 8.6 0.0003 37.3 2.1 22 30-51 11-32 (219)
290 3foz_A TRNA delta(2)-isopenten 44.6 12 0.00041 38.5 3.1 16 36-51 11-26 (316)
291 3iij_A Coilin-interacting nucl 44.2 11 0.00039 34.7 2.7 18 34-51 10-27 (180)
292 1zd8_A GTP:AMP phosphotransfer 44.1 8.5 0.00029 37.3 1.9 19 33-51 5-23 (227)
293 2v54_A DTMP kinase, thymidylat 43.9 9.2 0.00032 36.0 2.0 18 34-51 3-20 (204)
294 4ag6_A VIRB4 ATPase, type IV s 43.4 21 0.00072 37.8 5.0 41 34-78 34-74 (392)
295 1kag_A SKI, shikimate kinase I 43.4 10 0.00034 34.7 2.1 17 34-50 3-19 (173)
296 3tlx_A Adenylate kinase 2; str 43.3 11 0.00038 37.0 2.6 16 36-51 30-45 (243)
297 1zak_A Adenylate kinase; ATP:A 43.0 8.4 0.00029 37.2 1.6 17 34-50 4-20 (222)
298 2ehv_A Hypothetical protein PH 42.7 22 0.00075 34.5 4.7 25 31-55 26-50 (251)
299 2x8a_A Nuclear valosin-contain 42.6 11 0.00037 38.0 2.4 15 37-51 46-60 (274)
300 3jvv_A Twitching mobility prot 42.4 9.8 0.00033 40.0 2.1 19 33-51 121-139 (356)
301 2jaq_A Deoxyguanosine kinase; 41.9 9.7 0.00033 35.8 1.8 14 37-50 2-15 (205)
302 1ly1_A Polynucleotide kinase; 41.7 9.8 0.00034 34.9 1.8 15 37-51 4-18 (181)
303 1svm_A Large T antigen; AAA+ f 41.3 11 0.00038 39.9 2.3 20 31-50 165-184 (377)
304 1nks_A Adenylate kinase; therm 41.1 9.5 0.00032 35.4 1.6 14 37-50 3-16 (194)
305 3dm5_A SRP54, signal recogniti 41.0 39 0.0013 36.5 6.6 37 36-76 101-138 (443)
306 3a00_A Guanylate kinase, GMP k 40.9 12 0.0004 35.0 2.2 16 36-51 2-17 (186)
307 1qhx_A CPT, protein (chloramph 40.7 11 0.00039 34.5 2.1 17 35-51 3-19 (178)
308 1f2t_A RAD50 ABC-ATPase; DNA d 40.6 17 0.00057 32.8 3.1 24 36-61 24-47 (149)
309 1znw_A Guanylate kinase, GMP k 40.5 11 0.00039 35.8 2.1 21 31-51 16-36 (207)
310 4gp7_A Metallophosphoesterase; 40.3 6.7 0.00023 36.2 0.4 19 33-51 7-25 (171)
311 3e2i_A Thymidine kinase; Zn-bi 40.3 25 0.00086 34.0 4.4 42 33-78 26-67 (219)
312 1zp6_A Hypothetical protein AT 40.1 6.9 0.00024 36.5 0.4 19 32-50 6-24 (191)
313 2plr_A DTMP kinase, probable t 39.6 10 0.00034 36.0 1.5 17 35-51 4-20 (213)
314 1f9v_A Kinesin-like protein KA 39.5 19 0.00066 37.6 3.8 36 18-53 63-103 (347)
315 3lnc_A Guanylate kinase, GMP k 39.3 10 0.00036 36.7 1.6 19 33-51 25-43 (231)
316 3m6a_A ATP-dependent protease 39.2 16 0.00054 40.8 3.3 19 35-53 108-126 (543)
317 3c8u_A Fructokinase; YP_612366 39.2 5.6 0.00019 38.1 -0.4 28 23-50 6-37 (208)
318 2rhm_A Putative kinase; P-loop 39.2 9.7 0.00033 35.5 1.3 17 35-51 5-21 (193)
319 4eun_A Thermoresistant glucoki 38.9 12 0.00042 35.3 2.1 19 33-51 27-45 (200)
320 3dc4_A Kinesin-like protein NO 38.7 32 0.0011 35.8 5.3 35 18-52 72-112 (344)
321 4edh_A DTMP kinase, thymidylat 38.3 54 0.0018 31.4 6.6 18 34-51 5-22 (213)
322 2wwf_A Thymidilate kinase, put 38.2 12 0.00041 35.5 1.9 18 34-51 9-26 (212)
323 1nn5_A Similar to deoxythymidy 38.0 11 0.00037 35.9 1.5 18 34-51 8-25 (215)
324 2z0h_A DTMP kinase, thymidylat 37.9 12 0.00042 34.8 1.9 15 37-51 2-16 (197)
325 2ewv_A Twitching motility prot 37.8 11 0.00036 40.0 1.5 20 32-51 133-152 (372)
326 1aky_A Adenylate kinase; ATP:A 37.6 13 0.00045 35.6 2.0 16 35-50 4-19 (220)
327 1y63_A LMAJ004144AAA protein; 37.6 14 0.00047 34.4 2.1 17 35-51 10-26 (184)
328 2ze6_A Isopentenyl transferase 37.5 12 0.00042 37.1 1.8 15 37-51 3-17 (253)
329 1ny5_A Transcriptional regulat 37.5 21 0.00073 37.8 3.8 19 33-51 158-176 (387)
330 1tev_A UMP-CMP kinase; ploop, 37.5 12 0.00039 34.9 1.6 17 35-51 3-19 (196)
331 2y65_A Kinesin, kinesin heavy 37.4 24 0.00083 37.1 4.2 36 18-53 62-103 (365)
332 3kl4_A SRP54, signal recogniti 37.1 30 0.001 37.2 5.0 37 36-76 98-135 (433)
333 1ypw_A Transitional endoplasmi 37.1 13 0.00046 43.6 2.4 17 35-51 238-254 (806)
334 2vp4_A Deoxynucleoside kinase; 37.1 12 0.0004 36.5 1.6 16 35-50 20-35 (230)
335 3v9p_A DTMP kinase, thymidylat 37.1 10 0.00034 37.1 1.1 19 33-51 23-41 (227)
336 3tmk_A Thymidylate kinase; pho 37.0 13 0.00044 36.0 1.8 18 34-51 4-21 (216)
337 1m7g_A Adenylylsulfate kinase; 36.8 14 0.00048 35.2 2.1 19 32-50 22-40 (211)
338 3kta_A Chromosome segregation 36.8 22 0.00074 32.8 3.4 24 36-61 27-50 (182)
339 2rep_A Kinesin-like protein KI 36.7 22 0.00076 37.5 3.8 36 18-53 94-134 (376)
340 3t0q_A AGR253WP; kinesin, alph 36.6 21 0.00073 37.3 3.6 36 18-53 64-104 (349)
341 4etp_A Kinesin-like protein KA 36.6 23 0.00077 37.9 3.8 36 18-53 119-159 (403)
342 4tmk_A Protein (thymidylate ki 36.5 70 0.0024 30.6 7.0 17 35-51 3-19 (213)
343 1bg2_A Kinesin; motor protein, 36.1 27 0.00091 36.1 4.2 36 18-53 55-96 (325)
344 4eaq_A DTMP kinase, thymidylat 36.0 12 0.00042 36.4 1.5 18 34-51 25-42 (229)
345 3eph_A TRNA isopentenyltransfe 35.9 19 0.00066 38.4 3.1 17 36-52 3-19 (409)
346 2zfi_A Kinesin-like protein KI 35.8 19 0.00065 37.9 3.0 35 19-53 68-108 (366)
347 1rz3_A Hypothetical protein rb 35.7 28 0.00094 32.8 4.0 28 24-51 6-38 (201)
348 3crm_A TRNA delta(2)-isopenten 35.6 20 0.00067 37.1 3.0 16 36-51 6-21 (323)
349 1knq_A Gluconate kinase; ALFA/ 35.6 13 0.00046 34.0 1.7 17 35-51 8-24 (175)
350 1zuh_A Shikimate kinase; alpha 35.6 15 0.00051 33.4 2.0 16 36-51 8-23 (168)
351 2pez_A Bifunctional 3'-phospho 35.5 13 0.00044 34.3 1.5 18 34-51 4-21 (179)
352 1rj9_A FTSY, signal recognitio 35.3 38 0.0013 34.5 5.2 37 35-75 102-138 (304)
353 3fb4_A Adenylate kinase; psych 34.9 14 0.0005 35.1 1.8 15 37-51 2-16 (216)
354 1htw_A HI0065; nucleotide-bind 34.9 16 0.00053 33.4 1.9 18 33-50 31-48 (158)
355 2orv_A Thymidine kinase; TP4A 34.8 35 0.0012 33.3 4.5 40 34-77 18-57 (234)
356 3dl0_A Adenylate kinase; phosp 34.7 15 0.0005 35.1 1.8 15 37-51 2-16 (216)
357 2yvu_A Probable adenylyl-sulfa 34.4 14 0.00047 34.4 1.5 17 35-51 13-29 (186)
358 4a74_A DNA repair and recombin 34.3 13 0.00044 35.7 1.4 24 31-54 21-44 (231)
359 3auy_A DNA double-strand break 34.1 20 0.00067 37.8 2.9 25 36-62 26-50 (371)
360 1ak2_A Adenylate kinase isoenz 34.1 16 0.00055 35.5 2.0 15 36-50 17-31 (233)
361 2cdn_A Adenylate kinase; phosp 34.1 16 0.00056 34.3 2.1 16 36-51 21-36 (201)
362 1ukz_A Uridylate kinase; trans 34.1 15 0.00052 34.5 1.8 16 36-51 16-31 (203)
363 1e6c_A Shikimate kinase; phosp 34.1 17 0.00057 33.1 2.1 16 36-51 3-18 (173)
364 1vma_A Cell division protein F 33.9 44 0.0015 34.1 5.4 35 36-74 105-139 (306)
365 2pbr_A DTMP kinase, thymidylat 33.9 16 0.00053 34.0 1.8 15 37-51 2-16 (195)
366 3vkg_A Dynein heavy chain, cyt 33.9 60 0.0021 44.0 7.8 38 18-55 889-926 (3245)
367 3t61_A Gluconokinase; PSI-biol 33.7 17 0.00057 34.3 2.0 16 36-51 19-34 (202)
368 1gtv_A TMK, thymidylate kinase 33.6 9.9 0.00034 36.2 0.4 14 37-50 2-15 (214)
369 1zu4_A FTSY; GTPase, signal re 33.4 34 0.0012 35.2 4.5 33 37-73 107-139 (320)
370 1qf9_A UMP/CMP kinase, protein 33.3 15 0.00051 34.0 1.6 16 36-51 7-22 (194)
371 3tqc_A Pantothenate kinase; bi 33.2 31 0.0011 35.6 4.1 31 21-51 72-108 (321)
372 2xb4_A Adenylate kinase; ATP-b 33.0 16 0.00055 35.2 1.8 14 37-50 2-15 (223)
373 2vhj_A Ntpase P4, P4; non- hyd 33.0 24 0.00081 36.5 3.1 19 35-53 123-141 (331)
374 3uie_A Adenylyl-sulfate kinase 32.9 18 0.00061 34.1 2.1 19 33-51 23-41 (200)
375 1x88_A Kinesin-like protein KI 32.8 22 0.00074 37.4 2.8 36 18-53 66-107 (359)
376 1xjc_A MOBB protein homolog; s 32.5 50 0.0017 30.4 5.0 39 36-78 5-43 (169)
377 3lv8_A DTMP kinase, thymidylat 32.5 17 0.00057 35.7 1.8 18 34-51 26-43 (236)
378 3a4m_A L-seryl-tRNA(SEC) kinas 32.4 15 0.00051 36.5 1.5 17 35-51 4-20 (260)
379 1e4v_A Adenylate kinase; trans 32.3 16 0.00054 34.9 1.6 15 37-51 2-16 (214)
380 3qks_A DNA double-strand break 32.2 26 0.00088 33.3 3.1 26 36-63 24-49 (203)
381 3cf2_A TER ATPase, transitiona 32.2 19 0.00065 42.1 2.5 21 36-58 239-259 (806)
382 2pt5_A Shikimate kinase, SK; a 32.0 18 0.0006 32.8 1.8 15 37-51 2-16 (168)
383 1p5z_B DCK, deoxycytidine kina 31.8 16 0.00054 36.3 1.6 16 35-50 24-39 (263)
384 3b9q_A Chloroplast SRP recepto 31.7 34 0.0012 34.9 4.1 36 36-75 101-136 (302)
385 3nwn_A Kinesin-like protein KI 31.6 25 0.00086 36.8 3.1 34 20-53 84-123 (359)
386 3be4_A Adenylate kinase; malar 31.4 19 0.00064 34.5 2.0 16 36-51 6-21 (217)
387 2h58_A Kinesin-like protein KI 31.2 19 0.00066 37.3 2.1 43 11-53 49-99 (330)
388 3lda_A DNA repair protein RAD5 31.0 33 0.0011 36.6 4.0 23 34-56 177-199 (400)
389 2cbz_A Multidrug resistance-as 30.8 14 0.00049 36.2 1.0 43 3-50 4-46 (237)
390 4a14_A Kinesin, kinesin-like p 30.8 31 0.0011 35.9 3.7 35 18-52 61-101 (344)
391 3tif_A Uncharacterized ABC tra 30.6 15 0.0005 36.1 1.0 20 31-50 27-46 (235)
392 3dzd_A Transcriptional regulat 30.5 44 0.0015 35.1 4.8 30 22-51 139-168 (368)
393 3d3q_A TRNA delta(2)-isopenten 30.4 27 0.00092 36.3 3.0 16 36-51 8-23 (340)
394 3b6u_A Kinesin-like protein KI 30.2 22 0.00075 37.5 2.3 36 18-53 79-120 (372)
395 2wbe_C Bipolar kinesin KRP-130 30.1 25 0.00084 37.2 2.7 36 18-53 78-119 (373)
396 3gbj_A KIF13B protein; kinesin 30.1 36 0.0012 35.6 4.0 36 18-53 70-111 (354)
397 3e70_C DPA, signal recognition 29.9 42 0.0014 34.6 4.5 18 35-52 129-146 (328)
398 2vli_A Antibiotic resistance p 29.6 15 0.00052 33.7 1.0 17 35-51 5-21 (183)
399 3asz_A Uridine kinase; cytidin 29.5 17 0.00059 34.4 1.3 18 34-51 5-22 (211)
400 1gvn_B Zeta; postsegregational 29.5 27 0.00093 35.2 2.9 14 37-50 35-48 (287)
401 2bdt_A BH3686; alpha-beta prot 29.4 17 0.00058 33.8 1.2 16 36-51 3-18 (189)
402 1tf7_A KAIC; homohexamer, hexa 29.2 51 0.0017 36.4 5.3 50 31-85 277-326 (525)
403 3cmu_A Protein RECA, recombina 29.1 31 0.0011 44.5 3.8 41 34-78 1426-1466(2050)
404 4hlc_A DTMP kinase, thymidylat 29.0 19 0.00066 34.4 1.6 16 35-50 2-17 (205)
405 1pzn_A RAD51, DNA repair and r 29.0 29 0.00099 36.2 3.1 24 34-57 130-153 (349)
406 1goj_A Kinesin, kinesin heavy 28.7 26 0.00088 36.7 2.6 36 18-53 58-99 (355)
407 2bbw_A Adenylate kinase 4, AK4 28.5 23 0.00078 34.6 2.1 16 35-50 27-42 (246)
408 1sgw_A Putative ABC transporte 28.4 17 0.00058 35.1 1.1 21 31-51 31-51 (214)
409 3cmw_A Protein RECA, recombina 28.2 47 0.0016 42.2 5.2 41 32-76 31-71 (1706)
410 2pze_A Cystic fibrosis transme 28.2 17 0.00057 35.5 1.0 44 3-51 7-50 (229)
411 3lre_A Kinesin-like protein KI 28.2 23 0.00077 37.2 2.0 36 18-53 83-124 (355)
412 2owm_A Nckin3-434, related to 28.2 37 0.0013 36.6 3.8 36 18-53 114-155 (443)
413 1t5c_A CENP-E protein, centrom 28.1 22 0.00074 37.2 1.9 36 18-53 55-96 (349)
414 2ocp_A DGK, deoxyguanosine kin 27.8 19 0.00064 35.1 1.3 16 35-50 2-17 (241)
415 2ff7_A Alpha-hemolysin translo 27.8 17 0.00059 35.9 1.0 44 3-51 8-51 (247)
416 3qf7_A RAD50; ABC-ATPase, ATPa 27.6 32 0.0011 36.1 3.1 25 36-62 24-48 (365)
417 2vvg_A Kinesin-2; motor protei 27.6 24 0.00081 36.9 2.1 35 18-52 67-107 (350)
418 3bfn_A Kinesin-like protein KI 27.6 28 0.00095 36.9 2.6 36 18-53 76-117 (388)
419 2og2_A Putative signal recogni 27.6 43 0.0015 35.0 4.1 37 35-75 157-193 (359)
420 2pcj_A ABC transporter, lipopr 27.6 16 0.00055 35.4 0.7 41 3-50 5-45 (224)
421 1v8k_A Kinesin-like protein KI 27.3 24 0.00081 37.7 2.0 36 18-53 132-173 (410)
422 2ghi_A Transport protein; mult 27.1 18 0.00062 36.0 1.0 45 3-51 18-62 (260)
423 1odf_A YGR205W, hypothetical 3 27.0 38 0.0013 34.2 3.5 15 37-51 33-47 (290)
424 1ye8_A Protein THEP1, hypothet 26.6 25 0.00085 32.7 1.8 15 37-51 2-16 (178)
425 2nr8_A Kinesin-like protein KI 26.5 39 0.0013 35.4 3.5 35 19-53 82-122 (358)
426 2i3b_A HCR-ntpase, human cance 26.5 29 0.00098 32.7 2.3 17 35-51 1-17 (189)
427 1tq4_A IIGP1, interferon-induc 26.2 45 0.0015 35.7 4.0 28 23-50 37-84 (413)
428 1mv5_A LMRA, multidrug resista 26.1 17 0.00057 35.8 0.5 43 3-51 2-44 (243)
429 1c9k_A COBU, adenosylcobinamid 26.0 55 0.0019 30.5 4.1 33 38-77 2-34 (180)
430 3ld9_A DTMP kinase, thymidylat 26.0 23 0.0008 34.4 1.6 17 35-51 21-37 (223)
431 1g6h_A High-affinity branched- 26.0 19 0.00066 35.7 1.0 42 3-51 8-49 (257)
432 1ji0_A ABC transporter; ATP bi 25.5 20 0.00068 35.2 1.0 42 3-51 7-48 (240)
433 2qi9_C Vitamin B12 import ATP- 25.4 20 0.00068 35.5 1.0 20 32-51 23-42 (249)
434 2xxa_A Signal recognition part 25.4 64 0.0022 34.7 5.0 25 37-61 102-126 (433)
435 2d2e_A SUFC protein; ABC-ATPas 25.4 20 0.00069 35.4 1.0 42 3-51 4-45 (250)
436 1ls1_A Signal recognition part 25.3 61 0.0021 32.8 4.6 35 36-74 99-133 (295)
437 1vpl_A ABC transporter, ATP-bi 25.3 21 0.0007 35.5 1.0 21 31-51 37-57 (256)
438 3cf2_A TER ATPase, transitiona 25.1 31 0.0011 40.3 2.7 22 36-59 512-533 (806)
439 2heh_A KIF2C protein; kinesin, 25.1 28 0.00095 36.9 2.0 36 18-53 112-153 (387)
440 2qt1_A Nicotinamide riboside k 24.9 23 0.0008 33.4 1.3 16 35-50 21-36 (207)
441 2zu0_C Probable ATP-dependent 24.8 21 0.00072 35.7 1.0 21 31-51 42-62 (267)
442 1via_A Shikimate kinase; struc 24.7 30 0.001 31.5 2.1 14 37-50 6-19 (175)
443 2nq2_C Hypothetical ABC transp 24.7 21 0.00072 35.4 1.0 43 3-51 5-47 (253)
444 2yz2_A Putative ABC transporte 24.6 22 0.00074 35.6 1.0 49 1-51 1-49 (266)
445 2ixe_A Antigen peptide transpo 24.6 22 0.00074 35.7 1.0 44 3-50 17-60 (271)
446 1cke_A CK, MSSA, protein (cyti 24.6 30 0.001 33.0 2.1 16 35-50 5-20 (227)
447 1vht_A Dephospho-COA kinase; s 24.5 27 0.00091 33.3 1.7 16 36-51 5-20 (218)
448 3gfo_A Cobalt import ATP-bindi 24.3 21 0.00072 35.9 0.9 43 3-51 8-50 (275)
449 3u06_A Protein claret segregat 24.2 30 0.001 37.0 2.1 36 18-53 117-157 (412)
450 2iyv_A Shikimate kinase, SK; t 24.1 33 0.0011 31.5 2.2 16 36-51 3-18 (184)
451 3cob_A Kinesin heavy chain-lik 24.1 25 0.00087 37.0 1.5 36 18-53 58-98 (369)
452 1b0u_A Histidine permease; ABC 24.0 22 0.00076 35.4 1.0 42 3-51 7-48 (262)
453 2jeo_A Uridine-cytidine kinase 24.0 28 0.00095 34.0 1.7 30 22-51 12-41 (245)
454 3b5x_A Lipid A export ATP-bind 24.0 19 0.00066 40.5 0.6 62 3-73 342-403 (582)
455 3cmu_A Protein RECA, recombina 23.7 65 0.0022 41.6 5.3 42 33-78 1079-1120(2050)
456 3bs4_A Uncharacterized protein 23.5 53 0.0018 32.6 3.7 49 35-89 21-70 (260)
457 2wsm_A Hydrogenase expression/ 23.4 56 0.0019 30.8 3.8 33 18-50 11-45 (221)
458 1z6t_A APAF-1, apoptotic prote 23.3 42 0.0014 37.5 3.3 30 23-52 131-164 (591)
459 4g1u_C Hemin import ATP-bindin 23.1 23 0.0008 35.3 1.0 40 31-74 33-72 (266)
460 2v3c_C SRP54, signal recogniti 22.9 50 0.0017 35.5 3.6 18 37-54 101-118 (432)
461 2olj_A Amino acid ABC transpor 22.8 24 0.00084 35.2 1.0 42 3-51 25-66 (263)
462 3f8t_A Predicted ATPase involv 22.7 33 0.0011 37.4 2.1 31 20-51 217-254 (506)
463 2ihy_A ABC transporter, ATP-bi 22.7 24 0.00082 35.5 1.0 43 2-51 21-63 (279)
464 1sq5_A Pantothenate kinase; P- 22.6 57 0.0019 33.1 3.8 19 33-51 78-96 (308)
465 3nh6_A ATP-binding cassette SU 22.4 21 0.00072 36.5 0.5 43 3-51 54-96 (306)
466 3cmw_A Protein RECA, recombina 22.4 52 0.0018 41.8 4.0 36 35-74 732-767 (1706)
467 1ihu_A Arsenical pump-driving 22.4 75 0.0026 35.5 5.1 38 35-76 8-46 (589)
468 3l0o_A Transcription terminati 22.0 66 0.0023 34.1 4.1 42 11-52 146-192 (427)
469 3p32_A Probable GTPase RV1496/ 21.8 1.4E+02 0.005 30.7 6.9 35 19-53 59-97 (355)
470 2bbs_A Cystic fibrosis transme 21.8 25 0.00084 35.7 0.8 19 33-51 62-80 (290)
471 2oze_A ORF delta'; para, walke 21.5 1.3E+02 0.0043 30.0 6.2 47 23-73 21-71 (298)
472 3cio_A ETK, tyrosine-protein k 21.3 1.8E+02 0.0061 29.2 7.3 34 36-73 105-139 (299)
473 2if2_A Dephospho-COA kinase; a 21.3 33 0.0011 32.1 1.6 15 37-51 3-17 (204)
474 1tf7_A KAIC; homohexamer, hexa 21.2 41 0.0014 37.2 2.6 51 24-76 27-78 (525)
475 4e22_A Cytidylate kinase; P-lo 21.2 39 0.0013 33.2 2.2 19 33-51 25-43 (252)
476 1ypw_A Transitional endoplasmi 21.0 29 0.00099 40.8 1.3 24 35-60 511-534 (806)
477 3bfv_A CAPA1, CAPB2, membrane 20.7 2E+02 0.007 28.3 7.5 34 36-73 83-117 (271)
478 3dr5_A Putative O-methyltransf 20.5 2.7E+02 0.0092 26.3 8.1 68 14-88 34-102 (221)
479 3of5_A Dethiobiotin synthetase 20.2 79 0.0027 30.5 4.1 31 38-72 7-38 (228)
480 2ffh_A Protein (FFH); SRP54, s 20.1 1E+02 0.0034 33.0 5.2 21 37-57 100-120 (425)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=3e-90 Score=800.52 Aligned_cols=596 Identities=22% Similarity=0.326 Sum_probs=418.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhhhh
Q 004385 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~~ 93 (757)
|++ ||+|++||.+|++++.+++++++|||||||||++||+|++.++... +. ||+|+|||++|++|+++|++++..
T Consensus 2 ~~~-R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~-kvli~t~T~~l~~Qi~~el~~l~~- 76 (620)
T 4a15_A 2 YEN-RQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL-KVLYLVRTNSQEEQVIKELRSLSS- 76 (620)
T ss_dssp ----CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC-EEEEEESSHHHHHHHHHHHHHHHH-
T ss_pred CCC-CHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC-eEEEECCCHHHHHHHHHHHHHHhh-
Confidence 665 9999999999999999999999999999999999999999998653 46 999999999999999999999854
Q ss_pred ccccCCCccceEEEEecCCccccc-chHHhhhcCcccHHH---HHHHhhhHHHHHhhhcCCCCCCCcCccchHHhhhc-C
Q 004385 94 QTRHLGPAAKILAIGLSSRKNLCV-NSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNIETCEFFENYEKAASA-A 168 (757)
Q Consensus 94 ~~~~~~~~~~~~~~~l~gr~~lC~-~~~~~~~~~~~~~~~---~c~~l~~~w~~~~~~~~~~~~~C~~~~~~~~~~~~-~ 168 (757)
..+++++.|+||+|+|+ ++.+....+ ...+. .|..+...|.. .+...|+||.+.....+. .
T Consensus 77 -------~~~~~~~~l~gr~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~~------~~~~~C~~~~~~~~~gd~~~ 142 (620)
T 4a15_A 77 -------TMKIRAIPMQGRVNMCILYRMVDDLHE-INAESLAKFCNMKKREVMA------GNEAACPYFNFKIRSDETKR 142 (620)
T ss_dssp -------HSCCCEEECCCHHHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHHT------TCTTSSTTCSGGGGCHHHHH
T ss_pred -------ccCeEEEEEECCCcccccChhhhhccc-chhhhHHHHHHHHHhcccc------CCCCCCCcccccCcccchhH
Confidence 23688999999999999 988765433 23343 89877654321 123689999876431111 0
Q ss_pred CCCCCCCCHHHHHHhcccCCCCchHHHHhccccCeEEEecCccccCHHHHhHhhh---ccCCCcEEEEcCCcChhHHHHh
Q 004385 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK---EMQKESVVVFDEAHNIDNVCIE 245 (757)
Q Consensus 169 ~~~~~~~~ie~l~~~~~~~~~CpY~~ar~~~~~adiiv~ny~yll~~~~~~~~~~---~l~~~~ilI~DEAHnl~~~~~~ 245 (757)
.+..++++++++++.|+.++.||||.+|+.+..|||||+||+||||+.+++.+.. ..+++++|||||||||+|+|++
T Consensus 143 ~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~ 222 (620)
T 4a15_A 143 FLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRS 222 (620)
T ss_dssp HHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHH
T ss_pred HhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHH
Confidence 1134678999999999999999999999999999999999999999998764322 1368999999999999999999
Q ss_pred hccccccHHHHHHHHHHHHHHHHHHHHhhh-hchHHHHHH----HHHHHHHHHhcCCCccccccCCCCChhhhhhccCcc
Q 004385 246 ALSVSVRRQTLEGATRNLSRINQEIERFKA-TDAGRLRAE----YNRLVEGLALRGNLPNAWLSNPALPSDILKEAVPGN 320 (757)
Q Consensus 246 ~~s~~is~~~l~~~~~~l~~~~~~~~~~~~-~~~~~l~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (757)
++|.+++...|..+.+++.++... .+.. .....+.+. +..+...+.. . .. . .
T Consensus 223 ~~S~~ls~~~l~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~--~~-------~--~ 279 (620)
T 4a15_A 223 IGSFRISVESLNRADREAQAYGDP--ELSQKIHVSDLIEMIRSALQSMVSERCG----------K--GD-------V--R 279 (620)
T ss_dssp HHCEEEEHHHHHHHHHHHHHTTCC--EEETTEEHHHHHHHHHHHHHHHHHHHCS----------S--SC-------E--E
T ss_pred hhcceeCHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHhhc----------c--cc-------c--C
Confidence 999999999999988877654210 0000 001111111 1111111110 0 00 0 0
Q ss_pred hhchhhHHHHHHHHHHHHHhhhhcccccccChhHHHHHHHhhhccccchhhhhHHHHHHHHHHhhccCCCccchhHhHHH
Q 004385 321 IRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICD 400 (757)
Q Consensus 321 i~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rl~~~~~~l~~~~~~~~~~l~~i~~ 400 (757)
+ ....+...+..+..... +....++..+.. ..+.+..... .........+..+.+
T Consensus 280 ~-~~~~l~~~~~~~~~~~~----------~~l~~~~~~l~~-----------~~~~~~~~~~---~~~~~~~~~~~~~~~ 334 (620)
T 4a15_A 280 I-RFQEFMEYMRIMNKRSE----------REIRSLLNYLYL-----------FGEYVENEKE---KVGKVPFSYCSSVAS 334 (620)
T ss_dssp E-CTHHHHHHHHHHHTCCH----------HHHHHHHHHHHH-----------HHHHHHHHHH---HTTSCCCCHHHHHHH
T ss_pred C-ChHHHHHHHHHhhcccH----------HHHHHHHHHHHH-----------HHHHHHhhcc---ccccccccHHHHHHH
Confidence 0 01111111111100000 000001111100 0000100000 000111223455556
Q ss_pred HHHHhcccC-CCeEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhccCeEEEeccCCCCCcchhhhhCCCCcccccc
Q 004385 401 FATLVGTYT-RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 479 (757)
Q Consensus 401 f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~ld~s~~~~~l~~~~~svIltSgTL~p~~~~~~~Lg~~~~~~~~~ 479 (757)
|...+...+ .+|..|++... +..|+++|+||+..|+ ++ .++++|||||||+|.++|.+.||++ ....++
T Consensus 335 fl~~~~~~~~~~~~~~~~~~~-------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-~~~~~~ 404 (620)
T 4a15_A 335 RIIAFSDQDEEKYAAILSPED-------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-IPFKKI 404 (620)
T ss_dssp HHHHHHTSCTTTEEEEEECGG-------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-CCEEEC
T ss_pred HHHHHhhcCCCCEEEEEEeCC-------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-ceeeec
Confidence 655543333 37888887542 3689999999999999 99 9999999999999999999999998 666778
Q ss_pred eeeeccCceeeeEEecCCCCccceeccccCCChHHHHHHHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHH
Q 004385 480 KMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 559 (757)
Q Consensus 480 ~~~~~~~~~~~~vi~~g~~~~~l~s~f~~r~~~~~~~~~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~ 559 (757)
+++++.++...++++ .++++|+.|+ +++...+++.|.++++.+|||+|||||||++|+++++.|+. +
T Consensus 405 ~spf~~~~~~~~~~~------~~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~------~ 471 (620)
T 4a15_A 405 GEIFPPENRYIAYYD------GVSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF------E 471 (620)
T ss_dssp CCCSCGGGEEEEEEC------CC-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS------C
T ss_pred CCCCCHHHeEEEEeC------CCCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh------c
Confidence 888887777655432 3677787775 46778999999999999999999999999999999999872 1
Q ss_pred hcCccEEEeCCCc--hhHHHHHHHHHHhccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHH
Q 004385 560 MQHKLVFIETQDV--VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEY 637 (757)
Q Consensus 560 ~~~k~if~E~~~~--~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~ 637 (757)
..+ |.++. .++..++++|+ ++++|||||+||||||||||+|+.+|+|||+|||||+| ||.+++|++|
T Consensus 472 -~~~----~~q~~~~~~~~~ll~~f~-----~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~ 540 (620)
T 4a15_A 472 -HMK----EYRGIDQKELYSMLKKFR-----RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDY 540 (620)
T ss_dssp -CEE----CCTTCCSHHHHHHHHHHT-----TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHH
T ss_pred -chh----ccCCCChhHHHHHHHHhc-----cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHH
Confidence 112 66663 46778899998 47899999999999999999999999999999999999 6999999999
Q ss_pred HHHhcCCCccch-hHHHHHHHHHHhcccccccCCCeeEEEEeecccCCccccCCCcHHHHhhccccccCCCHHHHHHHHH
Q 004385 638 LRDTFQIKEGDF-LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 716 (757)
Q Consensus 638 l~~~~~~~~~~~-~~~~a~~~~~Q~iGR~IR~~~D~G~villD~R~~~~~~~~~lp~w~~~~~~~~~~~~~~~~~~~~~~ 716 (757)
++++++ .++.| |..+|+++++||+||+|||++|||+|+|+|+|| +.+++.||+ ++.... ....+.
T Consensus 541 ~~~~~g-~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~--~~~~~~LP~-~~~~~~----------~~~~~~ 606 (620)
T 4a15_A 541 YERKYG-KGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA--GQFRKFIPD-MKKTSD----------PASDIY 606 (620)
T ss_dssp HHHHHS-CHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG--GGGGGGSTT-CEEESC----------HHHHHH
T ss_pred HHHhhC-CCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch--HHHHHhCCc-hhhhcC----------cHHHHH
Confidence 999876 22332 555699999999999999999999999999999 779999999 765332 135678
Q ss_pred HHHHHhcC
Q 004385 717 EFLRKMAQ 724 (757)
Q Consensus 717 ~Ff~~~~~ 724 (757)
+||+....
T Consensus 607 ~f~~~~~~ 614 (620)
T 4a15_A 607 NFFISAQA 614 (620)
T ss_dssp HHHHHHHT
T ss_pred HHHhChhh
Confidence 99987643
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=3.4e-78 Score=695.16 Aligned_cols=528 Identities=20% Similarity=0.277 Sum_probs=381.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhhhh
Q 004385 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~~ 93 (757)
|+ +||+|.+||.+|++++.+++++++|||||||||++||+|++.. +. +|+|+|||++|++|+.+|++++..
T Consensus 2 ~~-~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~-~v~i~~pt~~l~~q~~~~~~~l~~- 72 (551)
T 3crv_A 2 VK-LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KP-KVLFVVRTHNEFYPIYRDLTKIRE- 72 (551)
T ss_dssp CS-CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CS-EEEEEESSGGGHHHHHHHHTTCCC-
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CC-eEEEEcCCHHHHHHHHHHHHHHhh-
Confidence 55 4999999999999999999999999999999999999999872 45 999999999999999999998743
Q ss_pred ccccCCCccceEEEEecCCcccccchHHhhhcCcccHHHHHHHhhhHHHHHhhhcCCCCCCCcCccchHHhhhcCCCCCC
Q 004385 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG 173 (757)
Q Consensus 94 ~~~~~~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~c~~l~~~w~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~ 173 (757)
..+++++.++||+|+|+++.+. .. +... .| ..|+||.+..... .
T Consensus 73 -------~~~~~~~~l~gr~~~c~~~~~~-~~-~~~~--~c------------------~~c~~~~~~~~~g-------~ 116 (551)
T 3crv_A 73 -------KRNITFSFLVGKPSSCLYAEKG-AE-SEDI--PC------------------KYCELKGSIVEVK-------T 116 (551)
T ss_dssp -------SSCCCEEECCCHHHHCTTBCTT-CC-GGGC--CG------------------GGCTTTTCCCCCC-------C
T ss_pred -------hcCccEEEEccccccCcCchhc-CC-Cccc--cc------------------CCCCCcccccccc-------c
Confidence 2357889999999999998765 32 1111 34 2588876543211 1
Q ss_pred CCCHHHHHHh----cccCCCCchHHHHhccccCeEEEecCccccCHHHHhHhhhccCCCcEEEEcCCcChhHHHHhhccc
Q 004385 174 VYTLQDLRAF----GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSV 249 (757)
Q Consensus 174 ~~~ie~l~~~----~~~~~~CpY~~ar~~~~~adiiv~ny~yll~~~~~~~~~~~l~~~~ilI~DEAHnl~~~~~~~~s~ 249 (757)
..+++++.+. |..++.|||+.+|+.+..|||||+||+||+++..+..+. ..++..++||||||||++ |++++|.
T Consensus 117 ~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~-~~~~~~~vIiDEAHnl~d-~~~~~s~ 194 (551)
T 3crv_A 117 DDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID-IDLREYMIVIDEAHNLDK-VNELEER 194 (551)
T ss_dssp CSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC-CCSTTEEEEETTGGGGGG-GGGGGCE
T ss_pred cCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC-CCcCCeEEEEecccchHH-HHHhhce
Confidence 3445554433 347899999999999999999999999999998766432 235789999999999999 9999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHhcCCCccccccCCCCChhhhhhccCcchhchhhHHH
Q 004385 250 SVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPNAWLSNPALPSDILKEAVPGNIRRAEHFLH 329 (757)
Q Consensus 250 ~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 329 (757)
+|+..++..+.+.+..... . +.+.++...+.........+...+.. .+.+.+
T Consensus 195 ~ls~~~l~~~~~~l~~~~~----------~---~~l~~l~~~l~~~~~~~~~~~~~~~~---------------~~~~~~ 246 (551)
T 3crv_A 195 SLSEITIQMAIKQSKSEES----------R---RILSKLLNQLREVVLPDEKYIKVENV---------------PKLSKE 246 (551)
T ss_dssp EEEHHHHHHHHHHCSCHHH----------H---HHHHHHHHHHTTSCCSCSSCEECSCC---------------CCCCHH
T ss_pred ecCHHHHHHHHHHHHHHHH----------H---HHHHHHHHHHHHHhhccccccccccC---------------hHHHHH
Confidence 9999999988776543311 0 11223333332200000000000000 011112
Q ss_pred HHHHHHHHHHhhhhcccccccChhHHHHHHHhhhccccchhhhhHHHHHHHHHHhhccCCCccchhHhHHHHHHHhcccC
Q 004385 330 VLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYT 409 (757)
Q Consensus 330 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rl~~~~~~l~~~~~~~~~~l~~i~~f~~~~~~~~ 409 (757)
.+..+.+.+.... ...... .......+..+.+|...+.. +
T Consensus 247 ~l~~l~~~l~~~~--------------~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~-~ 286 (551)
T 3crv_A 247 ELEILADDYEDIR--------------KDSLKQ-------------------------GKVNKIHIGSILRFFSLLSI-G 286 (551)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHT-------------------------TCBCCCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHH--------------Hhhhhc-------------------------CCcccchHHHHHHHHHHHhc-c
Confidence 2222222111100 000000 00001112233333322212 3
Q ss_pred CCeEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhcc-CeEEEeccCCCCCcchhhhhCCC-Ccc----cccceeee
Q 004385 410 RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLNFH-PVV----SRSFKMSL 483 (757)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~l~~~~ld~s~~~~~l~~~~-~svIltSgTL~p~~~~~~~Lg~~-~~~----~~~~~~~~ 483 (757)
++++ .+. .+ .++++|+||+..|+ +++++ +++|||||||+|.++|.+.||++ +.. ...+++++
T Consensus 287 ~~~v--~~~--------~~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf 354 (551)
T 3crv_A 287 SFIP--FSY--------SK-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV 354 (551)
T ss_dssp SCEE--EEE--------TT-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC
T ss_pred CCeE--ecc--------CC-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC
Confidence 3442 221 13 89999999999999 99998 99999999999999999999998 332 44566777
Q ss_pred ccCceeeeEEecCCCCccceeccccCCChHHHHHHHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCc
Q 004385 484 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 563 (757)
Q Consensus 484 ~~~~~~~~vi~~g~~~~~l~s~f~~r~~~~~~~~~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k 563 (757)
+++.. ++++. .++++|+.|+ +++...+++.|.++++.+|||+|||||||++|+++++. ..+
T Consensus 355 -~~~~~-l~v~~-----~~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~-----------~~~ 415 (551)
T 3crv_A 355 -SGSYE-CYIGV-----DVTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR-----------ISL 415 (551)
T ss_dssp -SCEEE-EEEEC-----SCCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-----------CCS
T ss_pred -CCceE-EEEeC-----CCCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-----------cCC
Confidence 55554 34443 4677888776 56789999999999999999999999999999999862 136
Q ss_pred cEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccCC---CCCceEEEEeccCCcccCcHHHHHHHHHHHH
Q 004385 564 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD---RHYGRLVIMFGVPFQYTLSKILLARLEYLRD 640 (757)
Q Consensus 564 ~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf~---~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~ 640 (757)
+||+|+++. +...+++.|++ ..++|||||+||+|||||||+ |+.||+|||+|||||+| ||.+++|++|+++
T Consensus 416 ~v~~q~~~~-~~~~~~~~~~~----~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~ 489 (551)
T 3crv_A 416 PKYVESEDS-SVEDLYSAISA----NNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSL 489 (551)
T ss_dssp SEEECCSSC-CHHHHHHHTTS----SSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTC
T ss_pred cEEEcCCCC-CHHHHHHHHHh----cCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHH
Confidence 799999874 34667888873 356999999999999999999 99999999999999999 9999999999996
Q ss_pred hcCCCcc-chhHHHHHHHHHHhcccccccCCCeeEEEEeecccCCccccCCCcHHHHhhccc
Q 004385 641 TFQIKEG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 701 (757)
Q Consensus 641 ~~~~~~~-~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD~R~~~~~~~~~lp~w~~~~~~~ 701 (757)
+.+..++ .+|..+|+++++||+||+|||++|||+|+|+|+||.+ +|+++.++.
T Consensus 490 ~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~--------~~~~~~~~~ 543 (551)
T 3crv_A 490 KMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFES--------LYWKKNLKC 543 (551)
T ss_dssp CSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGS--------HHHHHHTTC
T ss_pred hhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhccc--------chhhhhcee
Confidence 6543222 2265569999999999999999999999999999986 667666554
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.8e-71 Score=634.15 Aligned_cols=518 Identities=18% Similarity=0.250 Sum_probs=315.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
.+|+ +||.|.+||.+|.+++.+++++++|||||||||++||+|++.+ ++ +|+|+|+|+++++|++++++++
T Consensus 4 ~~~~-~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~-~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKLQ-LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK-KVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC-EEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC-cEEEEcCCHHHHHHHHHHHHhc-
Confidence 4575 5999999999999999999999999999999999999998864 35 9999999999999999999874
Q ss_pred hhccccCCCccceEEEEecCCcccccchHHhhhcCcccHHHHHHHhhhHHHHHhhhcCCCCCCCcCccchHHhhhcCCCC
Q 004385 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171 (757)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~c~~l~~~w~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~ 171 (757)
+++++.++||+++|+++...... + +..| ..|+++++.....+.
T Consensus 75 -----------~~~~~~l~gr~~lC~~~~~~~~~--~--~~~c------------------~~c~~~~~~~~~gd~---- 117 (540)
T 2vl7_A 75 -----------GLKTGFLIGKSASCIYAQGDEEP--D--EINC------------------SKCRLKDKIKTIEDK---- 117 (540)
T ss_dssp -----------TCCEEEC--------------------------------------------------------------
T ss_pred -----------CCcEEEecCCccccCCchhcccc--c--ccCC------------------CCCCchhcccccccC----
Confidence 25678899999999998654321 1 1123 235555543221111
Q ss_pred CCCCCHHHHHHhcccCCCCchHHHHhccccCeEEEecCccccCHHHHhHhh-----hccCCCcEEEEcCCcChhHHHHhh
Q 004385 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS-----KEMQKESVVVFDEAHNIDNVCIEA 246 (757)
Q Consensus 172 ~~~~~ie~l~~~~~~~~~CpY~~ar~~~~~adiiv~ny~yll~~~~~~~~~-----~~l~~~~ilI~DEAHnl~~~~~~~ 246 (757)
++.+.+...+..++.|||+.+|+.+..|||||+||+||+++..++.+. ..+++.+++|||||||+++ ++++
T Consensus 118 ---~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~ 193 (540)
T 2vl7_A 118 ---EPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKW 193 (540)
T ss_dssp ------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGG
T ss_pred ---CcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH-HHHH
Confidence 111222345667899999999999999999999999999998876543 1356889999999999966 8999
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHhcCCCccccccCCCCChhhhhhccCcchhchhh
Q 004385 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPNAWLSNPALPSDILKEAVPGNIRRAEH 326 (757)
Q Consensus 247 ~s~~is~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 326 (757)
+|.+|+..++..+.+++..... ....+...+.+.+.++.+.+...... ..+... ...+.. ..+
T Consensus 194 ~s~~ls~~~l~~~~~~l~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~~-~~~~~~---------~~~~~~---~~~ 256 (540)
T 2vl7_A 194 FTRKISRKMLERALKEIEIVER----LNRIDAKKVKDYINLLIDYMSKLIKD-GRCHEL---------SLMPLP---DRE 256 (540)
T ss_dssp GCEEECHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHHHHHTSCCS-SSEEEE---------SCCCCC---CHH
T ss_pred hccccCHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHHHHHHHhhcc-ccccch---------hhcccc---cHH
Confidence 9999999999999887765321 11122333444444444444321000 000000 001100 001
Q ss_pred HHHHHHHHHHHHHhhhhcccccccChhHHHHHHHhhhccccchhhhhHHHHHHHHHHhhccCCCccchhHhHHHHHHHhc
Q 004385 327 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 406 (757)
Q Consensus 327 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~rl~~~~~~l~~~~~~~~~~l~~i~~f~~~~~ 406 (757)
.+..+..+.+.+... ..... ....+..+.+|. .
T Consensus 257 ~l~~l~~~~~~~~~~------------------------~~~~~--------------------~~~~l~~~l~~~---~ 289 (540)
T 2vl7_A 257 TNGELIVVTRAYLNI------------------------DEGPV--------------------KKSSLKSLLKFV---E 289 (540)
T ss_dssp HHHHHHHHHHHHHTT------------------------CCSSS--------------------CCCHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHh------------------------hccCc--------------------cHHHHHHHHHHH---H
Confidence 111111111111000 00000 001122222222 1
Q ss_pred ccCCCeEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhccCeEEEeccCCCCC----cchhhhhCCCCcccccceee
Q 004385 407 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI----DLYPRLLNFHPVVSRSFKMS 482 (757)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ld~s~~~~~l~~~~~svIltSgTL~p~----~~~~~~Lg~~~~~~~~~~~~ 482 (757)
. +..+.|. . ..+++.|.++...+.+.+...+++|||||||+|. +.|. .. +...
T Consensus 290 ~--~~~~~~~---~--------~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~--~~--------~~~~ 346 (540)
T 2vl7_A 290 M--KGDLYNC---N--------GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYK--IV--------VNES 346 (540)
T ss_dssp S--CCEEEEE---T--------TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEE--EE--------CCCC
T ss_pred h--CCCEEEE---C--------CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcC--Cc--------hhhe
Confidence 1 2334443 1 1566666666555544444456679999999993 2220 00 1111
Q ss_pred eccCceeeeEEecCCCCccceeccccCCChHHHHHHHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcC
Q 004385 483 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 562 (757)
Q Consensus 483 ~~~~~~~~~vi~~g~~~~~l~s~f~~r~~~~~~~~~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~ 562 (757)
+.. ...++ ...++|+|++|+++ + ..+++.|.+++...|||+|||||||+.|+++++.|+.
T Consensus 347 ~g~---~~~~~-----~~~l~s~f~~r~~~-~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~---------- 406 (540)
T 2vl7_A 347 YGR---GEYYY-----CPNVTSELRKRNSN-I-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG---------- 406 (540)
T ss_dssp -CC---CEEEE-----CTTCCCCGGGHHHH-H-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT----------
T ss_pred ecC---Cccee-----ccccCCCcccccCH-H-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc----------
Confidence 100 11111 13578999998764 5 8899999999999999999999999999999988753
Q ss_pred ccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccCCCC--CceEEEEeccCCcccCcHHHHHHHHHHHH
Q 004385 563 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH--YGRLVIMFGVPFQYTLSKILLARLEYLRD 640 (757)
Q Consensus 563 k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf~~~--~~r~Vii~glPfp~~~dp~~~~r~~~l~~ 640 (757)
+++++|+.+ .++..++++|++ .++|||||++|+|||||||+|+ .+|+|||+|||||+|.||.+++|++|+++
T Consensus 407 ~~~~~q~~~-~~~~~~l~~f~~-----~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~ 480 (540)
T 2vl7_A 407 IPVIEENKK-TRHEEVLELMKT-----GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSK 480 (540)
T ss_dssp SCEEESTTT-CCHHHHHHHHHT-----SCCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHH
T ss_pred CceEecCCC-CcHHHHHHHHhc-----CCeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 458998876 467889999985 3589999999999999999998 89999999999999999999999999999
Q ss_pred hcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEeecccCCccccCCCc
Q 004385 641 TFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLP 692 (757)
Q Consensus 641 ~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD~R~~~~~~~~~lp 692 (757)
+++.++.+|..+.++++++||+||+|||++|||+|+|+|+||.+..|...|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l~ 532 (540)
T 2vl7_A 481 LTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGIS 532 (540)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTCC
T ss_pred hhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccccCcchhhcccC
Confidence 9887777777778899999999999999999999999999999988887663
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.80 E-value=1.1e-17 Score=183.51 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||.++..|+.++++++.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCe-eEEEECCCHHHHHHHHHHHHHHH
Confidence 567778999999877655 4789999999999999999999887654433345 89999999999999999998874
No 5
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.78 E-value=2.4e-17 Score=180.75 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
+.|..|||.|.+.+..+.+. .++++++.||||+|||++|+.|++........+. +++|.+||.++..|+.++++++
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 98 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP-QAICLAPSRELARQTLEVVQEM 98 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc-cEEEECCCHHHHHHHHHHHHHH
Confidence 56777899999988776532 2389999999999999999999887655433456 8999999999999999988876
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.76 E-value=5.9e-17 Score=178.45 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=63.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
+.|..|||.|.+.+..+. +++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++++.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI-QALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCc-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 467778999999887665 5688999999999999999999987754433345 89999999999999999988863
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.76 E-value=1.1e-16 Score=173.75 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
+.|..|||.|.+.+..+. ..++++++.||||+|||++++.|++.+.... .+. +++|.+||.++..|+.++++++.
T Consensus 24 ~g~~~~~~~Q~~~i~~~~---~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~-~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 24 KGFEKPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGI-EAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp HTCCSCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSC-CEEEECSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh---CCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCC-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 467778999999876654 4447999999999999999999988776433 245 89999999999999999988863
No 8
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=1.4e-16 Score=184.22 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=65.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC----CCCcEEEEEccchhhHHHHHHH
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
.++|..|||.|.+.+..+... +++.+++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.++
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC-eEEEEcchHHHHHHHHHH
Confidence 578998899999988776521 4679999999999999999999998766542 124 899999999999999999
Q ss_pred HHhhh
Q 004385 87 LKLLH 91 (757)
Q Consensus 87 l~~l~ 91 (757)
++++.
T Consensus 115 ~~~~~ 119 (579)
T 3sqw_A 115 VKKIH 119 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.76 E-value=1.9e-16 Score=176.41 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC-----CCCcEEEEEccchhhHHHHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~-----~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
+.|..|+|.|.+.+..+. +++++++.||||+|||++|++|++......+ .+. +++|.++|.++..|+.++
T Consensus 74 ~g~~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~-~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCC-SEEEECSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCc-cEEEEecCHHHHHHHHHH
Confidence 678888999999877654 6899999999999999999999998765432 244 899999999999999999
Q ss_pred HHhhh
Q 004385 87 LKLLH 91 (757)
Q Consensus 87 l~~l~ 91 (757)
++++.
T Consensus 149 ~~~~~ 153 (434)
T 2db3_A 149 ARKFA 153 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98863
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.73 E-value=5.8e-16 Score=178.62 Aligned_cols=79 Identities=22% Similarity=0.234 Sum_probs=65.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC----CCCcEEEEEccchhhHHHHHHH
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
.++|..+||.|.+.+..+.. .+++++++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.++
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe-eEEEEcCcHHHHHHHHHH
Confidence 46888889999998876652 14679999999999999999999998876542 124 899999999999999999
Q ss_pred HHhhhh
Q 004385 87 LKLLHN 92 (757)
Q Consensus 87 l~~l~~ 92 (757)
++++..
T Consensus 166 ~~~~~~ 171 (563)
T 3i5x_A 166 VKKIHD 171 (563)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988643
No 11
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.73 E-value=2.6e-16 Score=174.26 Aligned_cols=75 Identities=23% Similarity=0.190 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC------------------CCCcEEEEE
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP------------------ENPVKLIYC 73 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~------------------~~~~kvi~~ 73 (757)
+.|..|+|.|.+.+..+ .+++++++.||||+|||++|++|++......+ .+. +++|.
T Consensus 33 ~~~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lil 107 (417)
T 2i4i_A 33 TRYTRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYP-ISLVL 107 (417)
T ss_dssp HTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCC-SEEEE
T ss_pred CCCCCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCc-cEEEE
Confidence 46777899999987654 46899999999999999999999987754321 124 79999
Q ss_pred ccchhhHHHHHHHHHhhh
Q 004385 74 TRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 74 T~T~~l~~Q~~~el~~l~ 91 (757)
+||.++..|+.++++++.
T Consensus 108 ~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 108 APTRELAVQIYEEARKFS 125 (417)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 999999999999998863
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.72 E-value=7.2e-16 Score=170.34 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||.++..|+.++++++.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRET-QALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 678878999999887765 5789999999999999999999887654333345 89999999999999999998863
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.71 E-value=4.1e-16 Score=172.12 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=64.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+.|..|+|.|.+.+..+.+. .++++++.||||+|||++|++|++........+. +++|.+||.++..|+.+.++++
T Consensus 42 ~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 42 AMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp HTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC-CEEEECCCHHHHHHHHHHHHHH
Confidence 367887899999988776542 3489999999999999999999887765444445 8999999999999999888876
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 119 ~ 119 (412)
T 3fht_A 119 G 119 (412)
T ss_dssp T
T ss_pred H
Confidence 3
No 14
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.70 E-value=3.9e-15 Score=171.38 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=61.2
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
-.|+|..+||.|.+.+..+. +++++++.||||+|||++|++|++. ..+ +++|.+||.++..|.++.++.
T Consensus 38 ~~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~------~~g-~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 38 NVFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC------SDG-FTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp HTSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT------SSS-EEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH------cCC-cEEEEeCHHHHHHHHHHHHHh
Confidence 35999999999999887765 4789999999999999999999874 135 899999999999999998887
Q ss_pred h
Q 004385 90 L 90 (757)
Q Consensus 90 l 90 (757)
+
T Consensus 107 ~ 107 (591)
T 2v1x_A 107 L 107 (591)
T ss_dssp H
T ss_pred c
Confidence 4
No 15
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.69 E-value=2.3e-15 Score=161.34 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=60.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.++|..+||.|.+.+..+. +++++++.||||+|||++|+.|++.. +. +++|.+||.++..|+.++++++
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GM-KSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cC-CEEEEeCCHHHHHHHHHHHHHH
Confidence 4788888999999877655 67899999999999999999997752 35 8999999999999999999876
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 80 ~ 80 (337)
T 2z0m_A 80 G 80 (337)
T ss_dssp T
T ss_pred h
Confidence 3
No 16
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.69 E-value=1.4e-15 Score=168.15 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=64.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+.|..|||.|.+.+..+. +++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++++
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-QALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce-eEEEEeChHHHHHHHHHHHHHH
Confidence 3788889999999876655 5788999999999999999999987765443456 8999999999999999998886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 132 ~ 132 (414)
T 3eiq_A 132 G 132 (414)
T ss_dssp G
T ss_pred h
Confidence 3
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.68 E-value=5.8e-15 Score=163.46 Aligned_cols=72 Identities=22% Similarity=0.122 Sum_probs=61.4
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
-.|||++ +|.|.+.+..+. +++++++.||||+|||++|+.|++.... .++ +++|.+||.++..|+.+++++
T Consensus 16 ~~~~~~~-~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~-~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 16 KKFGKDL-TGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHSSCC-CHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHH
T ss_pred HhcCCCC-CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCC-EEEEEECCHHHHHHHHHHHHH
Confidence 3578875 999999877665 5789999999999999999999876652 246 899999999999999999988
Q ss_pred h
Q 004385 90 L 90 (757)
Q Consensus 90 l 90 (757)
+
T Consensus 87 ~ 87 (414)
T 3oiy_A 87 L 87 (414)
T ss_dssp H
T ss_pred H
Confidence 6
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.67 E-value=4.9e-15 Score=168.61 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=61.2
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHH
Q 004385 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 9 ~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
.-.|+|..+||.|.+.+..+. +++++++.||||+|||++|++|++.. .+ +++|.+||.++..|.+++++
T Consensus 18 ~~~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~~------~g-~~lvi~P~~aL~~q~~~~l~ 86 (523)
T 1oyw_A 18 QETFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALLL------NG-LTVVVSPLISLMKDQVDQLQ 86 (523)
T ss_dssp HHTTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHS------SS-EEEEECSCHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHHh------CC-CEEEECChHHHHHHHHHHHH
Confidence 345999999999999877765 57899999999999999999998742 35 89999999999999999887
Q ss_pred hh
Q 004385 89 LL 90 (757)
Q Consensus 89 ~l 90 (757)
.+
T Consensus 87 ~~ 88 (523)
T 1oyw_A 87 AN 88 (523)
T ss_dssp HT
T ss_pred Hc
Confidence 63
No 19
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.64 E-value=4.8e-16 Score=176.74 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=60.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
..|..|||.|.+.+..+.+. .++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++++
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~-~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP-QAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc-eEEEEECcHHHHHHHHHHHHHh
Confidence 34555799999987666532 2489999999999999999999887655443345 8999999999999999988875
No 20
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.63 E-value=5.8e-14 Score=157.75 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
+||.|.+.+..+.+ + ++++.+|||+|||++++.+++..... .+. +++|.+||.++..|..+++.+.
T Consensus 10 l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~-~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 10 PRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG-KVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp CCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH--SCS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC-eEEEEECCHHHHHHHHHHHHHH
Confidence 59999998877653 3 99999999999999999998876652 245 8999999999999999999986
No 21
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.59 E-value=1.4e-13 Score=163.16 Aligned_cols=73 Identities=26% Similarity=0.241 Sum_probs=61.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
++|..++|.|.+.+..+ +.+++++++.||||+|||+++..+++...... +. +++|.+||+++..|+.++++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GG-KAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CS-EEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CC-eEEEEeCcHHHHHHHHHHHHHh
Confidence 78877899999987652 34589999999999999999999988765433 46 9999999999999999988654
No 22
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.55 E-value=6.8e-13 Score=163.47 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=68.0
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHH
Q 004385 9 TVYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 9 ~v~FPy~~~r~~Q~~~~~~v~~~l~~~~--~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
...|||++ +|.|.+.+..+.+.+..++ +.++.||||+|||++++.+++.... .++ +++|.+||..+..|..++
T Consensus 597 ~~~f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~-~vlvlvPt~~La~Q~~~~ 671 (1151)
T 2eyq_A 597 CDSFPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHK-QVAVLVPTTLLAQQHYDN 671 (1151)
T ss_dssp HHTCCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTC-EEEEECSSHHHHHHHHHH
T ss_pred HHhCCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCC-eEEEEechHHHHHHHHHH
Confidence 34699996 9999999999999998886 8999999999999999988876543 256 999999999999999999
Q ss_pred HHhh
Q 004385 87 LKLL 90 (757)
Q Consensus 87 l~~l 90 (757)
+++.
T Consensus 672 ~~~~ 675 (1151)
T 2eyq_A 672 FRDR 675 (1151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 23
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.55 E-value=9.8e-14 Score=164.06 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
++|..+||.|.+.+..+ .+++++++.||||+|||+++..|++..... +. +++|.+||+++..|..++++++
T Consensus 21 ~g~~~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~-~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GG-KSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp C---CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TC-CEEEEESSHHHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CC-cEEEEeCcHHHHHHHHHHHHHH
Confidence 78877899999987774 458999999999999999999998866542 45 8999999999999999988654
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.54 E-value=8.5e-13 Score=161.64 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=63.9
Q ss_pred CeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHH
Q 004385 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 7 ~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
.+.-.|||++ +|.|.+.+..+ .++.++++.||||+|||++|+.|++..... ++ +++|.+||+++..|..++
T Consensus 176 ~~~~~~~f~l-tp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~-rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 176 NEARTYPFTL-DPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ-RVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp SCSSCCSSCC-CHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TC-EEEEEESSHHHHHHHHHH
T ss_pred HHHHhCCCCC-CHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc---CC-eEEEEcCcHHHHHHHHHH
Confidence 3456789985 99999977664 678999999999999999999998876542 46 999999999999999999
Q ss_pred HHhh
Q 004385 87 LKLL 90 (757)
Q Consensus 87 l~~l 90 (757)
++..
T Consensus 247 l~~~ 250 (1108)
T 3l9o_A 247 LLAE 250 (1108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 25
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.53 E-value=2.3e-13 Score=165.23 Aligned_cols=74 Identities=16% Similarity=0.155 Sum_probs=62.0
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHH
Q 004385 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (757)
Q Consensus 8 ~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el 87 (757)
..-.|||++ +|.|.+.+..+ .+++++++.||||+|||++|+.|+...... +. +++|.+||+++..|+.+++
T Consensus 32 ~~~~~~f~l-~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~-~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 32 PARSWPFEL-DTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MT-KTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp CSCCCSSCC-CHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TC-EEEEEESCGGGHHHHHHHH
T ss_pred HHHhCCCCC-CHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CC-eEEEEeCCHHHHHHHHHHH
Confidence 445799995 99999876554 568999999999999999999987765542 46 8999999999999999988
Q ss_pred Hhh
Q 004385 88 KLL 90 (757)
Q Consensus 88 ~~l 90 (757)
+..
T Consensus 103 ~~~ 105 (997)
T 4a4z_A 103 KET 105 (997)
T ss_dssp HTT
T ss_pred HHH
Confidence 874
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.5e-12 Score=158.11 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=62.3
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHH
Q 004385 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 9 ~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
.-.|||+ ++|.|.+.+..+ .+++++++.||||+|||++|+.|++..... +. +++|.+||+++..|..+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~-rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ-RVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TC-EEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhcc---CC-eEEEECChHHHHHHHHHHHH
Confidence 4568998 599999987764 468899999999999999999887766542 46 99999999999999999988
Q ss_pred hh
Q 004385 89 LL 90 (757)
Q Consensus 89 ~l 90 (757)
..
T Consensus 151 ~~ 152 (1010)
T 2xgj_A 151 AE 152 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 27
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.49 E-value=4.6e-13 Score=158.76 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
++|..+||.|.+.+..+ +.+++++++.||||+|||+++..|++...... +. +++|.+||+++..|+.++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG-KAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS-EEEEECSSGGGHHHHHHHTGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC-EEEEEcCcHHHHHHHHHHHHHH
Confidence 78887899999987652 34589999999999999999999988665432 46 9999999999999999988654
No 28
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.49 E-value=9.8e-13 Score=149.62 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
|++ +||.|.+.+..+.+ +..+++.+|||+|||++++.++....... +. +++|.+||.++..|..+++++.
T Consensus 111 ~~~-l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIE-PHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EEC-CCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SS-EEEEEESSHHHHHHHHHHHHHT
T ss_pred CCC-CCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CC-eEEEEECcHHHHHHHHHHHHHh
Confidence 556 49999999888764 47899999999999999999887665432 35 8999999999999999999875
No 29
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.47 E-value=8e-12 Score=144.72 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEcCCCCcHHHHHHHHHHHHHHcC------CCCCcEEEEEccchhhHHHHH-HHHH
Q 004385 17 IYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTL-AELK 88 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~-~~~liEaPTGtGKTla~L~~al~~~~~~------~~~~~kvi~~T~T~~l~~Q~~-~el~ 88 (757)
+||.|.+.+..+.+++.++ +.+++.+|||+|||++++..+....... ..++ +|+|.++|.++..|.. ++++
T Consensus 179 lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~-~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 179 PRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKP-RILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCC-CEEEEEC-----------CCT
T ss_pred chHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 6999999999999999887 5689999999999999776544433322 0346 8999999999999988 5444
No 30
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.47 E-value=1.2e-13 Score=139.37 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=64.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++.+......+. +++|.++|.++..|+.++++++
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCc-eEEEEECCHHHHHHHHHHHHHH
Confidence 3578778999999877654 5789999999999999999999988765444455 8999999999999999998876
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 106 ~ 106 (224)
T 1qde_A 106 A 106 (224)
T ss_dssp T
T ss_pred h
Confidence 3
No 31
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=138.19 Aligned_cols=74 Identities=20% Similarity=0.042 Sum_probs=61.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC------CCCCcEEEEEccchhhHHHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTLA 85 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~------~~~~~kvi~~T~T~~l~~Q~~~ 85 (757)
+.|..|||.|.+.+..+. +++++++.||||+|||++|++|++...... ..+. +++|.++|.++..|+.+
T Consensus 38 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP-GMLVLTPTRELALHVEA 112 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC-SEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC-cEEEEeCCHHHHHHHHH
Confidence 567778999999876654 678999999999999999999988765432 1345 89999999999999999
Q ss_pred HHHhh
Q 004385 86 ELKLL 90 (757)
Q Consensus 86 el~~l 90 (757)
+++++
T Consensus 113 ~~~~~ 117 (228)
T 3iuy_A 113 ECSKY 117 (228)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98886
No 32
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.45 E-value=2.2e-13 Score=139.12 Aligned_cols=76 Identities=13% Similarity=0.006 Sum_probs=64.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC-----CCCcEEEEEccchhhHHHHHH
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLA 85 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~-----~~~~kvi~~T~T~~l~~Q~~~ 85 (757)
.+.|..|||.|.+.+..+. +++++++.||||+|||++|++|++......+ .+. +++|.+||+++..|+.+
T Consensus 46 ~~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~-~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 46 RQNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP-ICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp TTTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC-SEEEECSSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC-EEEEEeCcHHHHHHHHH
Confidence 3678878999999887655 6789999999999999999999998766431 245 89999999999999999
Q ss_pred HHHhhh
Q 004385 86 ELKLLH 91 (757)
Q Consensus 86 el~~l~ 91 (757)
+++++.
T Consensus 121 ~~~~~~ 126 (242)
T 3fe2_A 121 VAAEYC 126 (242)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 33
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.45 E-value=1.7e-13 Score=136.12 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=64.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.++|..+||.|.+.+..+. +++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++++
T Consensus 20 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI-QAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCe-eEEEEeCcHHHHHHHHHHHHHH
Confidence 3678888999999877654 5789999999999999999999887654433345 8999999999999999998876
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 95 ~ 95 (206)
T 1vec_A 95 S 95 (206)
T ss_dssp T
T ss_pred H
Confidence 4
No 34
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=141.02 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC-CCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~-~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
..|..|||.|.+.+..+. +++++++.||||+|||++|++|++....... .+. +++|.+||.++..|+.++++++
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 577878999999876654 5788999999999999999999988765322 244 8999999999999999999886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 122 ~ 122 (245)
T 3dkp_A 122 S 122 (245)
T ss_dssp T
T ss_pred h
Confidence 3
No 35
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.43 E-value=3.1e-13 Score=135.79 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
++|..|||.|.+.+..+. +++++++.||||+|||++|+.|++........+. +++|.++|.++..|+.++++++.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE-EEEEEeCCHHHHHHHHHHHHHHH
Confidence 678878999999887665 4688999999999999999999987754433344 89999999999999999998864
No 36
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.43 E-value=5.4e-12 Score=154.51 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=60.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+||+ |+|.|.+.+..+. +++++++.||||+|||++||.+++..+. .+. +++|.+||.++..|+.+.++.+
T Consensus 74 ~~gf~-pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~-~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCC-CCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCC-eEEEEechHHHHHHHHHHHHHh
Confidence 47887 5999999877665 4789999999999999999888776552 246 8999999999999999998885
No 37
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.43 E-value=4.1e-13 Score=136.03 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=63.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++
T Consensus 41 ~~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 3678878999999877654 5789999999999999999999887654433345 8999999999999999998876
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 116 ~ 116 (230)
T 2oxc_A 116 G 116 (230)
T ss_dssp T
T ss_pred h
Confidence 3
No 38
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.42 E-value=1.6e-12 Score=159.21 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=60.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.|+|. | |.|.+.+..+. +++++++.||||+|||+ |++|++...... +. +++|.+||.++..|+.+.++++
T Consensus 53 ~~g~~-p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~-~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK--GK-RCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SC-CEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CC-eEEEEeccHHHHHHHHHHHHHH
Confidence 57888 7 99999887765 57899999999999998 888888776543 46 8999999999999999999886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 123 ~ 123 (1054)
T 1gku_B 123 A 123 (1054)
T ss_dssp H
T ss_pred H
Confidence 4
No 39
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.42 E-value=6.2e-13 Score=136.47 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=65.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+.|..+||.|.+.+..+. +++++++.||||+|||++|+.|++......+.+. +++|.++|.++..|+.++++++
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~-~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRL-FALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 4678888999999877655 6789999999999999999999988766554445 8999999999999999998886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 135 ~ 135 (249)
T 3ber_A 135 G 135 (249)
T ss_dssp H
T ss_pred h
Confidence 4
No 40
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.42 E-value=2.8e-13 Score=136.19 Aligned_cols=76 Identities=16% Similarity=0.045 Sum_probs=64.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+.|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++
T Consensus 21 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 21 TLRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEV-QAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp HTTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCc-eEEEEcCcHHHHHHHHHHHHHH
Confidence 3677778999999987665 5689999999999999999999987765433345 8999999999999999998886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 96 ~ 96 (219)
T 1q0u_A 96 T 96 (219)
T ss_dssp H
T ss_pred h
Confidence 4
No 41
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.42 E-value=5.9e-13 Score=136.93 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=62.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC---------CCCcEEEEEccchhhHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---------ENPVKLIYCTRTVHEMEK 82 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~---------~~~~kvi~~T~T~~l~~Q 82 (757)
+.|..|||.|.+.+..+. +++++++.||||+|||++|++|++....... .+. +++|.++|+++..|
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQ 115 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC-SEEEECSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc-eEEEEECCHHHHHH
Confidence 567778999999887655 5789999999999999999999988765321 124 89999999999999
Q ss_pred HHHHHHhhh
Q 004385 83 TLAELKLLH 91 (757)
Q Consensus 83 ~~~el~~l~ 91 (757)
+.++++++.
T Consensus 116 ~~~~~~~~~ 124 (253)
T 1wrb_A 116 ILSESQKFS 124 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988863
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.41 E-value=1.6e-11 Score=155.75 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
|+.+.|.|.+....++ ..++++++.||||+|||+++.+|++......+ +. |++|.+||+++..|..++++..
T Consensus 924 f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~-kavyi~P~raLa~q~~~~~~~~ 995 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EG-RCVYITPMEALAEQVYMDWYEK 995 (1724)
T ss_dssp CSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CC-EEEEEcChHHHHHHHHHHHHHH
Confidence 4557899999766554 56789999999999999999999887665543 45 8999999999999999998764
No 43
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.40 E-value=9.1e-13 Score=133.97 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=62.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC----CCCCcEEEEEccchhhHHHHHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK----PENPVKLIYCTRTVHEMEKTLAEL 87 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~----~~~~~kvi~~T~T~~l~~Q~~~el 87 (757)
+.|..++|.|.+.+..+. +++++++.||||+|||++|+.|++...... ..+. +++|.+||.++..|+.+++
T Consensus 43 ~~~~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 43 AQYRLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL-GVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp TTCCBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 567778999999876654 678999999999999999999998775432 1245 8999999999999999998
Q ss_pred Hhh
Q 004385 88 KLL 90 (757)
Q Consensus 88 ~~l 90 (757)
+++
T Consensus 118 ~~~ 120 (236)
T 2pl3_A 118 RKV 120 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.40 E-value=1.3e-11 Score=156.56 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=63.2
Q ss_pred eCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC--------CCCCcEEEEEccchhhHH
Q 004385 11 YFP-YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--------PENPVKLIYCTRTVHEME 81 (757)
Q Consensus 11 ~FP-y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~--------~~~~~kvi~~T~T~~l~~ 81 (757)
.|| |+.+.|.|.+.... ++..++++++.||||+|||+++.+|++...... ..+. |+||.+||+++..
T Consensus 73 ~f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~-k~lyiaP~kALa~ 148 (1724)
T 4f92_B 73 GFEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF-KIIYIAPMRSLVQ 148 (1724)
T ss_dssp TCTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSC-EEEEECSSHHHHH
T ss_pred hcCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCC-EEEEECCHHHHHH
Confidence 365 88889999886543 567789999999999999999999988766532 1245 9999999999999
Q ss_pred HHHHHHHhhh
Q 004385 82 KTLAELKLLH 91 (757)
Q Consensus 82 Q~~~el~~l~ 91 (757)
|..+++++..
T Consensus 149 e~~~~l~~~~ 158 (1724)
T 4f92_B 149 EMVGSFGKRL 158 (1724)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 45
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.39 E-value=1e-12 Score=130.57 Aligned_cols=74 Identities=20% Similarity=0.135 Sum_probs=62.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC---CCCCcEEEEEccchhhHHHHHHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~---~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
+.|..|||.|.+.+..+. +++++++.||||+|||++|+.|++...... ..+. +++|.++|.++..|+.++++
T Consensus 19 ~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP-RALVLTPTRELALQVASELT 93 (207)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCC-SEEEECSSHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC-cEEEEECCHHHHHHHHHHHH
Confidence 577778999999887654 578999999999999999999988775421 2245 89999999999999999988
Q ss_pred hh
Q 004385 89 LL 90 (757)
Q Consensus 89 ~l 90 (757)
++
T Consensus 94 ~~ 95 (207)
T 2gxq_A 94 AV 95 (207)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 46
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.37 E-value=9e-13 Score=134.20 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=63.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.++|.++..|+.++++++
T Consensus 47 ~~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 47 AYGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKET-QALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp HHTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEECcHHHHHHHHHHHHHH
Confidence 3578878999999877655 5789999999999999999999987654333345 8999999999999999999886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 122 ~ 122 (237)
T 3bor_A 122 G 122 (237)
T ss_dssp T
T ss_pred h
Confidence 3
No 47
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.33 E-value=3e-12 Score=132.37 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=63.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC----CCCcEEEEEccchhhHHHHHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAEL 87 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~el 87 (757)
+.|..++|.|.+.+..+. .++++++.||||+|||++|++|++......+ .+. +++|.+||.++..|+.+++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~-~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGT-GVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 567778999999887765 4688999999999999999999997765421 245 8999999999999999999
Q ss_pred Hhhh
Q 004385 88 KLLH 91 (757)
Q Consensus 88 ~~l~ 91 (757)
+++.
T Consensus 147 ~~~~ 150 (262)
T 3ly5_A 147 KELM 150 (262)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8864
No 48
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.32 E-value=3e-12 Score=140.17 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
++|..+||.|.+.+..+. +++++++.||||+|||++|++|++........++ +++|.++|.++..|+.++++++.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCC-CEEEEcCCHHHHHHHHHHHHHHh
Confidence 577778999999877665 4789999999999999999999988765444456 89999999999999999988763
No 49
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.26 E-value=6.1e-12 Score=132.66 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
+.|..|+|.|.+.+..+... .++++++.||||+|||++|++|++........+. +++|.+||.++..|+.+.++.+.
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~-~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc-eEEEEcCcHHHHHHHHHHHHHHH
Confidence 56788899999987655421 1389999999999999999999998765544445 89999999999999999888764
No 50
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.24 E-value=1.6e-10 Score=129.03 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=76.7
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.+|||++|....+.+++.++..++ +...+ ..+ ....+++.|++ |+..||+|+. -+.+|||+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~-------~~~~l-h~~--~~~~~~~~f~~----g~~~vLVaT~--v~~~GiDi 250 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQL-SRK--TFDTEYPKTKL----TDWDFVVTTD--ISEMGANF 250 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEE-CTT--THHHHGGGGGS----SCCSEEEECG--GGGSSCCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCC-------eEEEC-CHH--HHHHHHHhhcc----CCceEEEECC--HHHhCcCC
Confidence 478999999999999999999886542 22222 222 23456666664 6778999884 89999999
Q ss_pred CCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchh----HHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 609 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFL----TFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~----~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
|+ +.||-.|+++.+..| +. ...... .|.......|.+||+=|...+.|..+++.
T Consensus 251 p~---~~VI~~~~~~~~~~d-------------~~-~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 251 RA---GRVIDPRRCLKPVIL-------------TD-GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp CC---SEEEECCEEEEEEEE-------------CS-SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CC---CEEEECCCccccccc-------------cc-ccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 98 889977765432111 00 000000 11123456799999999988556555554
No 51
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.23 E-value=2.7e-11 Score=120.77 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=57.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC---CCCCcEEEEEccchhhHHH-HHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEK-TLAEL 87 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~---~~~~~kvi~~T~T~~l~~Q-~~~el 87 (757)
+.++ +||.|.+.+..+. +++++++.||||+|||++++.+++...... ..+. +++|.++|.++.+| +.+++
T Consensus 30 ~~~~-l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~-~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQ-LRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCC-CCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCC-CEEEEESSHHHHHHHHHHTH
T ss_pred CCCC-chHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCC-cEEEEECHHHHHHHHHHHHH
Confidence 3444 6999999987765 468999999999999999999988665431 1245 89999999999999 54566
Q ss_pred Hhh
Q 004385 88 KLL 90 (757)
Q Consensus 88 ~~l 90 (757)
.++
T Consensus 104 ~~~ 106 (216)
T 3b6e_A 104 QPF 106 (216)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 52
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.21 E-value=4e-11 Score=137.34 Aligned_cols=73 Identities=19% Similarity=0.248 Sum_probs=62.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCcEEEEEccchhhHHHHHHHHHhh
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
||++ ||.|.+.+..+. +++++++.||||+|||++|++|++......+. +. +++|.+||.++..|+.++++++
T Consensus 2 ~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKP-RNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG-KVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCC-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCC-cHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence 6775 999999887764 57899999999999999999999887765431 45 8999999999999999999886
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 76 ~ 76 (555)
T 3tbk_A 76 F 76 (555)
T ss_dssp H
T ss_pred h
Confidence 4
No 53
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.17 E-value=7.1e-11 Score=135.45 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=59.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCcEEEEEccchhhHHHHHHHHHh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
.|+++ ||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.+||.++..|+.+++++
T Consensus 4 ~~~~~-~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKA-RSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----C-CHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 46664 999999877664 47899999999999999999998877765432 45 899999999999999999998
Q ss_pred hh
Q 004385 90 LH 91 (757)
Q Consensus 90 l~ 91 (757)
+.
T Consensus 78 ~~ 79 (556)
T 4a2p_A 78 HF 79 (556)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.17 E-value=8.6e-10 Score=122.32 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=79.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.++||+++....+.+++.++..+ .+...+.++ ....+++.|++ |+-.||+|+. -+.+|||+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~v~~lhg~---~r~~~~~~f~~----g~~~vLVaT~--v~e~GiDi 233 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAG-------KKVLYLNRK---TFESEYPKCKS----EKWDFVITTD--ISEMGANF 233 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTT-------CCEEEESTT---THHHHTTHHHH----SCCSEEEECG--GGGTSCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcC-------CeEEEeCCc---cHHHHHHhhcC----CCCeEEEECc--hHHcCccc
Confidence 47899999999999999999987653 233334333 45677889987 6778999884 79999999
Q ss_pred CCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 609 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
| ...||..|.++.+.-| +..+- -.+-.+.....+.|.+||+=|....-|++++++
T Consensus 234 p---~~~VI~~g~~~~~v~d----------~~~~v---i~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 234 K---ADRVIDPRKTIKPILL----------DGRVS---MQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp C---CSEEEECCEEEEEEEE----------TTEEE---EEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred C---CcEEEecCccccceec----------cccee---ecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 7 5678777766532211 00000 000011124556799999999876666666654
No 55
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.16 E-value=6.1e-10 Score=128.58 Aligned_cols=120 Identities=14% Similarity=0.019 Sum_probs=79.8
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.+|||++|....+.+++.++..+. +...+.+ ..+..++++|++ |+-.||+|+. -+.+|||+
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~~lhg---~~R~~~l~~F~~----g~~~VLVaTd--v~~rGiDi 417 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR---KTFDTEYPKTKL----TDWDFVVTTD--ISEMGANF 417 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECT---TTHHHHTTHHHH----SCCSEEEECG--GGGTTCCC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC-------cEEEECh---HHHHHHHHhhcC----CCcEEEEECc--HHHcCccc
Confidence 478999999999999999999886542 3333333 245678889986 5777999884 89999999
Q ss_pred CCCCceEEEEeccCCcccC--cHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 609 DRHYGRLVIMFGVPFQYTL--SKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~--dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
+ .+.||..|+++-+.- +. +... .-.|-.|.......|.+||.=|.....|..+++.
T Consensus 418 ~---v~~VId~g~~~~P~~~~~~---------~~~~---~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 418 R---AGRVIDPRRCLKPVILTDG---------PERV---ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp C---CSEEEECCEEEEEEEECSS---------SCEE---EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred C---ceEEEECcceecceecccC---------CCce---EEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 4 799999998654210 00 0000 0011112234556799999999966555555544
No 56
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.15 E-value=1.4e-10 Score=137.13 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCcEEEEEccchhhHHHHHHHH
Q 004385 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAEL 87 (757)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el 87 (757)
-.|+|..+||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.++|.++..|..+++
T Consensus 7 ~~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 7 NLYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp CTTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCC-CEEEECSSHHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCC-eEEEEECCHHHHHHHHHHH
Confidence 35788889999999887764 47899999999999999999999877655432 25 8999999999999999999
Q ss_pred Hhhh
Q 004385 88 KLLH 91 (757)
Q Consensus 88 ~~l~ 91 (757)
+++.
T Consensus 82 ~~~~ 85 (696)
T 2ykg_A 82 SKYF 85 (696)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9864
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.13 E-value=1.7e-10 Score=135.83 Aligned_cols=77 Identities=14% Similarity=0.100 Sum_probs=67.7
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHH
Q 004385 10 VYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (757)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~~l~~~~--~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el 87 (757)
-.+||+ ++|.|.+.+.+|.+.+..+. +.++.||||+|||++|+.|++..... +. +++|.+||..+..|..+++
T Consensus 363 ~~lpf~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~-qvlvlaPtr~La~Q~~~~l 437 (780)
T 1gm5_A 363 KSLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF-QTAFMVPTSILAIQHYRRT 437 (780)
T ss_dssp HHSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS-CEEEECSCHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC-eEEEEeCcHHHHHHHHHHH
Confidence 368995 69999999999999988764 89999999999999999998876643 45 8999999999999999999
Q ss_pred Hhhh
Q 004385 88 KLLH 91 (757)
Q Consensus 88 ~~l~ 91 (757)
+++.
T Consensus 438 ~~~~ 441 (780)
T 1gm5_A 438 VESF 441 (780)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8864
No 58
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.11 E-value=1.9e-10 Score=137.70 Aligned_cols=74 Identities=18% Similarity=0.196 Sum_probs=60.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCcEEEEEccchhhHHHHHHHHHhh
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
++..|||.|.+.+..+. +++++++.||||+|||++|+.|++......+. ++ +++|.+||.++..|+.++++++
T Consensus 245 g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp ---CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence 36668999999877664 57899999999999999999999887765431 45 8999999999999999999986
Q ss_pred h
Q 004385 91 H 91 (757)
Q Consensus 91 ~ 91 (757)
.
T Consensus 320 ~ 320 (797)
T 4a2q_A 320 F 320 (797)
T ss_dssp H
T ss_pred c
Confidence 4
No 59
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.10 E-value=5.7e-11 Score=133.92 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=62.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
+.|..|+|.|.+.+..+... .++++++.||||+|||++|+.|++........++ +++|.+||.++..|+.+.++++.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~-~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC-cEEEEeChHHHHHHHHHHHHHHH
Confidence 57788899999988776531 2489999999999999999999887654443344 89999999999999988888764
No 60
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.04 E-value=3e-10 Score=137.85 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC--CCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~--~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
+..|||.|.+.+..+. +++++++.||||+|||++|+.|++......+. +. +++|.+||.++..|+.++++++.
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~-~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHHh
Confidence 5567999999877664 57899999999999999999998766544321 45 89999999999999999999864
No 61
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=136.51 Aligned_cols=73 Identities=21% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC---CCCcEEEEEccchhhHHHH-HHHHH
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---ENPVKLIYCTRTVHEMEKT-LAELK 88 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~---~~~~kvi~~T~T~~l~~Q~-~~el~ 88 (757)
+++ +||.|.+.+..+.+ ++++++.||||+|||++|+.|++......+ .+. +++|.+||+++..|. .++++
T Consensus 5 ~~~-l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~-~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp --C-CCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCC-CBCCEESCSHHHHHHHHHTHH
T ss_pred CCC-ccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCC-eEEEEECCHHHHHHHHHHHHH
Confidence 455 59999998877664 789999999999999999999987654321 125 899999999999999 99998
Q ss_pred hhh
Q 004385 89 LLH 91 (757)
Q Consensus 89 ~l~ 91 (757)
++.
T Consensus 79 ~~~ 81 (699)
T 4gl2_A 79 PFL 81 (699)
T ss_dssp HHH
T ss_pred HHc
Confidence 863
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.02 E-value=1.1e-08 Score=121.18 Aligned_cols=146 Identities=12% Similarity=0.070 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhhhc-cCCcEEEEecChHHHHHHHHHHhhcccHHHH----h-cCccEEEeCCCc--hhHHHHHHHHHH
Q 004385 513 GVARNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEI----M-QHKLVFIETQDV--VETTLALDNYRK 584 (757)
Q Consensus 513 ~~~~~~~~~l~~~~~~-~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~----~-~~k~if~E~~~~--~~~~~~l~~f~~ 584 (757)
++.......+.++... .+|.+|||+++....+.+++.+.+.. ..+ . ..-.+..-..+. .+...+++.|+.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG--DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH--HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 3445555556665543 57899999999999999999887420 011 0 011122222222 223334444430
Q ss_pred h-ccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcc
Q 004385 585 A-CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVG 663 (757)
Q Consensus 585 ~-~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iG 663 (757)
. -..|...||+|+ ..+..|||+++ .+.||-.|+|-....||... ++.| ...+. ....+.|.+|
T Consensus 363 ~~~~~g~~kVlVAT--~iae~GidIp~--v~~VId~g~~k~~~yd~~~g--~~~L-------~~~p~---S~~s~~QR~G 426 (773)
T 2xau_A 363 SHNGRPGRKVVIST--NIAETSLTIDG--IVYVVDPGFSKQKVYNPRIR--VESL-------LVSPI---SKASAQQRAG 426 (773)
T ss_dssp CSSSSCCEEEEEEC--THHHHTCCCTT--EEEEEECSEEEEEEEETTTT--EEEE-------EEEEC---CHHHHHHHHH
T ss_pred ccCCCCceEEEEeC--cHHHhCcCcCC--eEEEEeCCCccceeeccccC--cccc-------ccccC---CHHHHHhhcc
Confidence 0 003566788877 47999999995 78899988864322222100 0000 00122 2345679999
Q ss_pred cccccCCCeeEEEEe
Q 004385 664 RVIRSKADYGMMIFA 678 (757)
Q Consensus 664 R~IR~~~D~G~vill 678 (757)
|+=|. ..|..+.+
T Consensus 427 RaGR~--~~G~~~~l 439 (773)
T 2xau_A 427 RAGRT--RPGKCFRL 439 (773)
T ss_dssp GGGSS--SSEEEEES
T ss_pred ccCCC--CCCEEEEE
Confidence 99997 45765544
No 63
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.01 E-value=1.1e-09 Score=114.21 Aligned_cols=69 Identities=14% Similarity=0.116 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
++ +||.|.+.+..+.+ ++..++.||||+|||++++.++....... .. +++|.++|.++.+|..+++.+.
T Consensus 112 ~~-l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IE-PHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CC-CCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred cC-ccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CC-eEEEEECCHHHHHHHHHHHHHh
Confidence 44 59999998877654 36678899999999999988877655432 34 8999999999999999999875
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=98.94 E-value=2.6e-09 Score=108.38 Aligned_cols=67 Identities=16% Similarity=0.142 Sum_probs=53.4
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
.|+++ +||.|.+.+..+. +++.+++.+|||+|||+.++.++... +. +++|.++|.++..|+.+++.+
T Consensus 89 ~~~~~-l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 89 DAEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCC-CCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CS-CEEEEESSHHHHHHHHHHHGG
T ss_pred cCCCC-cCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEeCCHHHHHHHHHHHHh
Confidence 34455 5999999877644 45679999999999999988765431 35 899999999999999988776
No 65
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.91 E-value=2.1e-09 Score=120.80 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=56.4
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
..||++ +||.|.+.+..+. +++.+++.+|||+|||++++.++... +. +++|.+||.++..|..+++.+
T Consensus 88 ~~~~~~-l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~-~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 88 FDAEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCCCC-BCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CS-CEEEEESSHHHHHHHHHHGGG
T ss_pred ccCCCC-cCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEECCHHHHHHHHHHHHh
Confidence 446776 4999999887654 45679999999999999999886543 35 899999999999999998776
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.87 E-value=4.2e-07 Score=105.56 Aligned_cols=69 Identities=17% Similarity=0.082 Sum_probs=55.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhhh
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~ 92 (757)
.+. |+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+.. ++ .|.|.|+|..|..|..+++..+..
T Consensus 109 G~r-P~~VQ~~~ip~Ll----~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~-~v~VvTpTreLA~Qdae~m~~l~~ 177 (922)
T 1nkt_A 109 DQR-PFDVQVMGAAALH----LGN--VAEMKTGEGKTLTCVLPAYLNALA---GN-GVHIVTVNDYLAKRDSEWMGRVHR 177 (922)
T ss_dssp SCC-CCHHHHHHHHHHH----TTE--EEECCTTSCHHHHTHHHHHHHHTT---TS-CEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHhHh----cCC--EEEecCCCccHHHHHHHHHHHHHh---CC-CeEEEeCCHHHHHHHHHHHHHHHh
Confidence 454 4899988765443 444 999999999999999998754432 45 899999999999999998888754
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.83 E-value=4.3e-07 Score=103.28 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=86.8
Q ss_pred cccchHHhhccCeEEEeccCCCCCc-chhhhhCCCCcccccceeeeccCceeeeEEecCCCCcccee-ccccCCChHHHH
Q 004385 439 SLAVKPVFDRFQSVVITSGTLSPID-LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVST-KFDMRSDPGVAR 516 (757)
Q Consensus 439 s~~~~~l~~~~~svIltSgTL~p~~-~~~~~Lg~~~~~~~~~~~~~~~~~~~~~vi~~g~~~~~l~s-~f~~r~~~~~~~ 516 (757)
+..++.+|..++.+.-+|||+.+.. .|.+..|++.+. +|.+. |. ....- ..-+....+-..
T Consensus 399 ~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~-------IPtnk---------p~-~R~d~~d~vy~t~~eK~~ 461 (822)
T 3jux_A 399 TITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVV-------IPTHK---------PM-IRKDHDDLVFRTQKEKYE 461 (822)
T ss_dssp EECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEE-------CCCSS---------CC-CCEECCCEEESSHHHHHH
T ss_pred HHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEE-------ECCCC---------Cc-ceeecCcEEEecHHHHHH
Confidence 4566899999999999999998753 556666654211 11110 00 00000 001122233334
Q ss_pred HHHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEE
Q 004385 517 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 596 (757)
Q Consensus 517 ~~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~g 596 (757)
.+.+.|.+.. ..+..+|||++|....+.+...++..|+ +.....+ +.......+-.+.- .+|+|++|
T Consensus 462 al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi-------~~~vLhg-kq~~rE~~ii~~ag----~~g~VtVA 528 (822)
T 3jux_A 462 KIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGI-------PHQVLNA-KYHEKEAEIVAKAG----QKGMVTIA 528 (822)
T ss_dssp HHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTC-------CCEEECS-CHHHHHHHHHHHHH----STTCEEEE
T ss_pred HHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCC-------CEEEeeC-CchHHHHHHHHhCC----CCCeEEEE
Confidence 4444444432 2456899999999999999999987654 1122222 22222322222221 36789998
Q ss_pred eecCcccccccCC-CC-----CceEEEEeccC
Q 004385 597 VARGKVAEGIDFD-RH-----YGRLVIMFGVP 622 (757)
Q Consensus 597 v~~G~~~EGiDf~-~~-----~~r~Vii~glP 622 (757)
+. -...|+|++ |. .+-.||-.-+|
T Consensus 529 Td--mAgRGtDI~lg~~V~~~GglhVInte~P 558 (822)
T 3jux_A 529 TN--MAGRGTDIKLGPGVAELGGLCIIGTERH 558 (822)
T ss_dssp ET--TTTTTCCCCCCTTTTTTTSCEEEESSCC
T ss_pred cc--hhhCCcCccCCcchhhcCCCEEEecCCC
Confidence 84 789999997 22 23367766665
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.71 E-value=5.7e-08 Score=109.85 Aligned_cols=71 Identities=14% Similarity=0.050 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
+||.|.+.+..+......+..+++.+|||+|||+..+..+... ....... +++|.+|+ +++.|..+|+++.
T Consensus 38 L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~-~~~~~~~-~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDA-KKENELT-PSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHH-HHTTCCS-SEEEEECS-TTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHH-HhcCCCC-CEEEEccH-HHHHHHHHHHHHH
Confidence 6999999998888777788899999999999999987654433 3333345 78888895 5889999999875
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.69 E-value=3.7e-08 Score=119.16 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHhC----------CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHH
Q 004385 17 IYPEQYSYMLELKRALDAK----------GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~----------~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
|||.|.+.+..+.+.+..+ +.+++.+|||||||+++ ++++..+...+... +|+|.|+|..|..|+.++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~-rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFID-KVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCC-EEEEEECGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCc-eEEEEeCcHHHHHHHHHH
Confidence 6999999999999988643 57999999999999998 44455444333345 999999999999999998
Q ss_pred HHhh
Q 004385 87 LKLL 90 (757)
Q Consensus 87 l~~l 90 (757)
+.++
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8864
No 70
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.49 E-value=1.5e-07 Score=114.35 Aligned_cols=72 Identities=19% Similarity=0.212 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
+++ +||.|.+.+..+.. ..+..+++.+|||+|||+.++..+....... ..+ +++|.+|| +++.|..+|+.+.
T Consensus 151 ~~~-LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~-rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 151 RTS-LIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAE-RVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SSC-CCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCC-CEEEECCT-TTHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCC-eEEEEeCH-HHHHHHHHHHHHH
Confidence 354 59999998776654 2246789999999999999987765554433 345 89999999 9999999999764
No 71
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.49 E-value=2.2e-07 Score=107.94 Aligned_cols=70 Identities=16% Similarity=0.076 Sum_probs=56.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
..|. |+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+. .++ .++|.|+|..|..|..+++..+.
T Consensus 80 lG~~-pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~-~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 80 TGMF-PFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNAL---TGK-GVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HSCC-CCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHT---TSS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHH---cCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 3564 5999998765544 455 99999999999999999885443 246 89999999999999999888875
Q ss_pred h
Q 004385 92 N 92 (757)
Q Consensus 92 ~ 92 (757)
.
T Consensus 149 ~ 149 (844)
T 1tf5_A 149 E 149 (844)
T ss_dssp H
T ss_pred h
Confidence 4
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.48 E-value=3.2e-07 Score=109.58 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+||.|.+.+..+......+..+++-.+||.|||+..++.+.......+..+ +++|.+| .+++.|..+|+.+.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~-~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG-PHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS-CEEEECC-TTTHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC-CEEEEEC-chHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999987765443322222345 7888888 67789999999886
No 73
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.46 E-value=3.2e-07 Score=106.31 Aligned_cols=66 Identities=18% Similarity=0.103 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhhh
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~~ 92 (757)
|+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+. .+. .++|.|+|..|..|+.+++..+..
T Consensus 75 p~~VQ~~~i~~ll----~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~-~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 75 HFDVQLLGGMVLN----ERC--IAEMRTGEGKTLTATLPAYLNAL---TGK-GVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp CCHHHHHHHHHHH----SSE--EEECCTTSCHHHHHHHHHHHHHT---TSS-CCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CChHHHhhccccc----CCe--eeeecCCchHHHHHHHHHHHHHH---cCC-cEEEEcCCHHHHHHHHHHHHHHHH
Confidence 4899988765443 444 99999999999999999875443 245 899999999999999999888754
No 74
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.45 E-value=3.4e-07 Score=92.60 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC-CCcEEEEEccchhhHHHHHHHHHh
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-NPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~-~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
.++.|.+.+..+ .+++++++.||||+|||..+..+++......+. ...++++..+|..+..|+.+.+..
T Consensus 62 ~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 477888766554 578999999999999999888887765443321 123899999999999998776654
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.35 E-value=9.9e-07 Score=102.16 Aligned_cols=70 Identities=16% Similarity=0.053 Sum_probs=55.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
..|. |+|.|..-+-.+ -+|+ +.||+||+|||+++++|++..+. .+. .+.|.|+|..|..|..+.+..+.
T Consensus 76 lG~~-Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~-qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGMR-HFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNAL---TGK-GVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCCC-CCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHT---TCS-CCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCC-CcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHH---hCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 4564 599999876544 3455 99999999999999999865443 245 89999999999999999888875
Q ss_pred h
Q 004385 92 N 92 (757)
Q Consensus 92 ~ 92 (757)
.
T Consensus 145 ~ 145 (997)
T 2ipc_A 145 R 145 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.32 E-value=1.3e-06 Score=101.72 Aligned_cols=74 Identities=19% Similarity=0.231 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHHH-----hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCC----CCcEEEEEccchhhHHHHHHH
Q 004385 16 NIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLITSYVLSKPE----NPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~-----~~~~~liEaPTGtGKTla~L~~al~~~~~~~~----~~~kvi~~T~T~~l~~Q~~~e 86 (757)
.+||.|++.+..+.+.+. .+..+++-.+||+|||+..++.+.......+. .+ +++|.+++ +++.|..+|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~-~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID-KVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCS-CEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCC-cEEEEecH-HHHHHHHHH
Confidence 369999999999988874 45678999999999999988776555444321 24 68888887 788999999
Q ss_pred HHhhh
Q 004385 87 LKLLH 91 (757)
Q Consensus 87 l~~l~ 91 (757)
+.+..
T Consensus 133 ~~~~~ 137 (644)
T 1z3i_X 133 VGKWL 137 (644)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99864
No 77
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.05 E-value=1.7e-05 Score=92.41 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
..-+.|++. |..+|..+...+|.+|+|||||..... ++.++... +. +|++||+|+.-.+.+++.|..
T Consensus 189 ~LN~~Q~~A---V~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--~~-~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEA---VLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--GL-KVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHH---HHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHH---HHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--CC-eEEEEcCchHHHHHHHHHHHh
Confidence 357899874 566777778999999999999987543 44444443 46 899999999999999886654
No 78
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.89 E-value=6.5e-06 Score=94.53 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=44.6
Q ss_pred HHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 28 v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
+..++.+++++++.||||+|||++++.|++. .+. +++|.++|..+..|+.+.+.+
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~-~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY-KVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC-CEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC-eEEEEcchHHHHHHHHHHHHH
Confidence 4445567789999999999999999988663 145 899999999999999875554
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.83 E-value=0.00023 Score=67.16 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=75.1
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||+++....+.+.+.+...++ +...+.+. ...++...++.|+. ++-.||+++ ..+++|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~Gld 100 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY-------PCDKIHGGMIQEDRFDVMNEFKR----GEYRYLVAT--DVAARGID 100 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC--GGGTTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEC--ChhhcCCc
Confidence 457899999999999999999876542 33334332 23456678888886 566799887 48999999
Q ss_pred CCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEe
Q 004385 608 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 678 (757)
Q Consensus 608 f~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~vill 678 (757)
+|+ ++.||..++|... ....|++||+-|...+--++.++
T Consensus 101 ~~~--~~~Vi~~~~p~~~------------------------------~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 101 IEN--ISLVINYDLPLEK------------------------------ESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp CSC--CSEEEESSCCSSH------------------------------HHHHHHTTTSSCTTCCEEEEEEE
T ss_pred hhc--CCEEEEeCCCCCH------------------------------HHHHHhccccCcCCCCceEEEEe
Confidence 997 7789998877421 12248999999986553334443
No 80
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.82 E-value=9.2e-05 Score=85.66 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
...+.|.+.+..+. .+...+|.+|+|||||..... .+.++... .+. +|++|++|+...+++.+.+..
T Consensus 180 ~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSC-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCC-eEEEEeCcHHHHHHHHHHHHh
Confidence 35789998776654 367899999999999986443 33333332 245 899999999999999887664
No 81
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.79 E-value=6.1e-06 Score=92.01 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHH
Q 004385 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 29 ~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
.+++.+++++++.||||+|||++|+.|++..+... +. +++|.+||.++..|+.++++
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RL-RTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEECchHHHHHHHHHHhc
Confidence 55677889999999999999999999998766543 45 89999999999999988654
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.78 E-value=0.00014 Score=70.64 Aligned_cols=114 Identities=23% Similarity=0.291 Sum_probs=78.5
Q ss_pred HHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004385 521 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 599 (757)
Q Consensus 521 ~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~ 599 (757)
.|.+++...++.+|||+++....+.+.+.++..++ +...+.+. ...++..+++.|+. ++-.||+++
T Consensus 45 ~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~R~~~l~~F~~----g~~~vLvaT-- 111 (191)
T 2p6n_A 45 YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV-------EAVAIHGGKDQEERTKAIEAFRE----GKKDVLVAT-- 111 (191)
T ss_dssp HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHH----TSCSEEEEC--
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhc----CCCEEEEEc--
Confidence 35556666678999999999999999999876542 33334332 23456778899986 566799887
Q ss_pred CcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 600 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 600 G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
..+++|+|+++ ++.||..++|.. +. ...|++||+-|....--++.++.
T Consensus 112 ~~~~~Gldi~~--v~~VI~~d~p~~----~~--------------------------~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 112 DVASKGLDFPA--IQHVINYDMPEE----IE--------------------------NYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp HHHHTTCCCCC--CSEEEESSCCSS----HH--------------------------HHHHHHTTSCC---CCEEEEEEC
T ss_pred CchhcCCCccc--CCEEEEeCCCCC----HH--------------------------HHHHHhCccccCCCCcEEEEEEc
Confidence 47999999987 678999887642 11 12389999999865433444544
No 83
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.77 E-value=0.00022 Score=68.16 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=75.7
Q ss_pred HHHhhhcc-CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004385 522 LVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 599 (757)
Q Consensus 522 l~~~~~~~-~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~ 599 (757)
|.++++.. ++.+|||+++....+.+...+...++ +...+.+. ....+..+++.|+. |+-.||+++
T Consensus 25 L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~R~~~~~~f~~----g~~~vLvaT-- 91 (175)
T 2rb4_A 25 LCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------QVSLLSGELTVEQRASIIQRFRD----GKEKVLITT-- 91 (175)
T ss_dssp HHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECSSCCHHHHHHHHHHHHT----TSCSEEEEC--
T ss_pred HHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEe--
Confidence 44455444 56799999999999999999886542 33333332 23456678888885 566799887
Q ss_pred CcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEE
Q 004385 600 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIF 677 (757)
Q Consensus 600 G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~vil 677 (757)
..+++|+|+|+ ++.||..++|.-+..+ + ......|.+||+-|.... |.+++
T Consensus 92 ~~~~~Gid~~~--~~~Vi~~d~p~~~~~~--------------------~----~~~~~~qr~GR~gR~g~~-g~~~~ 142 (175)
T 2rb4_A 92 NVCARGIDVKQ--VTIVVNFDLPVKQGEE--------------------P----DYETYLHRIGRTGRFGKK-GLAFN 142 (175)
T ss_dssp CSCCTTTCCTT--EEEEEESSCCC--CCS--------------------C----CHHHHHHHHCBC----CC-EEEEE
T ss_pred cchhcCCCccc--CCEEEEeCCCCCcccc--------------------C----CHHHHHHHhcccccCCCC-ceEEE
Confidence 58999999997 8889999988532110 0 123346999999997543 54443
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.74 E-value=0.00027 Score=69.81 Aligned_cols=106 Identities=20% Similarity=0.269 Sum_probs=74.9
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||+++....+.+.+.+...++ +...+.+. ....+..+++.|+. |+-.||+|+ ..+.+|||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gid 96 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDLSQGERERVLGAFRQ----GEVRVLVAT--DVAARGLD 96 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC-------CEEEECSSSCHHHHHHHHHHHHS----SSCCEEEEC--TTTTCSSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCeEEEec--ChhhcCCC
Confidence 478999999999999999998876532 32333332 23456778888885 566799887 58999999
Q ss_pred CCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeE-EEEeec
Q 004385 608 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM-MIFADK 680 (757)
Q Consensus 608 f~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~-villD~ 680 (757)
+++ ++.||..++|.. + ....|.+||.-|.... |. +.++++
T Consensus 97 i~~--v~~Vi~~~~p~~----~--------------------------~~~~qr~GR~gR~g~~-g~~~~l~~~ 137 (212)
T 3eaq_A 97 IPQ--VDLVVHYRLPDR----A--------------------------EAYQHRSGRTGRAGRG-GRVVLLYGP 137 (212)
T ss_dssp CCC--BSEEEESSCCSS----H--------------------------HHHHHHHTTBCCCC---BEEEEEECG
T ss_pred Ccc--CcEEEECCCCcC----H--------------------------HHHHHHhcccCCCCCC-CeEEEEEch
Confidence 986 778998888742 1 2235899999998655 54 444443
No 85
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.71 E-value=9.8e-06 Score=89.79 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
++.+++++++.||||+|||++|+.|++..+... +. +++|.+||..+..|+.++++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~-~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL-RTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC-eEEEEcchHHHHHHHHHHHhc
Confidence 356789999999999999999999988765543 45 899999999999999987664
No 86
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.71 E-value=0.00026 Score=66.89 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=60.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||+++....+.+...++..++ ....+.+. ...++..+++.|+. ++..||+++ ..+++|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS----GSSRILIST--DLLARGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEE--GGGTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHc----CCCEEEEEc--ChhhcCCC
Confidence 457899999999999999999876542 22333332 23456678888885 566799988 48999999
Q ss_pred CCCCCceEEEEeccCC
Q 004385 608 FDRHYGRLVIMFGVPF 623 (757)
Q Consensus 608 f~~~~~r~Vii~glPf 623 (757)
+++ ++.||..++|.
T Consensus 96 ~~~--~~~Vi~~~~p~ 109 (165)
T 1fuk_A 96 VQQ--VSLVINYDLPA 109 (165)
T ss_dssp CCS--CSEEEESSCCS
T ss_pred ccc--CCEEEEeCCCC
Confidence 996 77899988875
No 87
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.67 E-value=3.2e-06 Score=98.24 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=78.6
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.+|||++|.+..+.+++.++..++ +...+.+ .++..+++.|+. |+-.||+|+. -+.+|||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~-------~v~~lHg---~eR~~v~~~F~~----g~~~VLVaTd--v~e~GIDi 472 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK-------RVIQLNR---KSYDTEYPKCKN----GDWDFVITTD--ISEMGANF 472 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEECS---SSHHHHGGGGGT----CCCSEEEECG--GGGTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------eEEEeCh---HHHHHHHHHHHC----CCceEEEECc--hhhcceee
Confidence 578999999999999999999886532 3344444 245667777775 6777999884 79999999
Q ss_pred CCCCceEEEEeccCCccc--CcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEe
Q 004385 609 DRHYGRLVIMFGVPFQYT--LSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 678 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~--~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~vill 678 (757)
| ++.||..|.++.+. .|. +.+++. .|-.|.....+.|.+||+=|.....|..+++
T Consensus 473 p---v~~VI~~g~~~~p~vi~da---------~~r~~l---l~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 473 G---ASRVIDCRKSVKPTILDEG---------EGRVIL---SVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp C---CSEEEECCEECCEEEECST---------TCEEEE---CCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred C---CcEEEECCCcccceeeecc---------ccccee---cccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 8 68899888766421 010 000100 0111223345679999999985555655555
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.60 E-value=0.00046 Score=66.56 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=65.4
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 530 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 530 ~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
++.+|||+++....+.+...++..++ ....+.+. ...++..+++.|+. ++-.||+++ ..+++|+|+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS----GKSPILVAT--AVAARGLDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-------CEEEEC--------CHHHHHHHH----TSSSEEEEE--C------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEc--ChhhcCCCc
Confidence 56899999999999999999876542 22333322 22345668889986 566799988 489999999
Q ss_pred CCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 609 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
++ ++.||..++|.. + ....|++||+-|....--++++++
T Consensus 113 ~~--~~~VI~~d~p~s----~--------------------------~~~~Qr~GR~~R~g~~g~~~~~~~ 151 (185)
T 2jgn_A 113 SN--VKHVINFDLPSD----I--------------------------EEYVHRIGRTGRVGNLGLATSFFN 151 (185)
T ss_dssp CS--BSEEEESSCCSS----H--------------------------HHHHHHHTTBCCTTSCEEEEEEEC
T ss_pred cc--CCEEEEeCCCCC----H--------------------------HHHHHHccccCCCCCCcEEEEEEc
Confidence 96 778998877641 1 122489999999865422344443
No 89
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.53 E-value=0.00036 Score=66.46 Aligned_cols=80 Identities=11% Similarity=0.177 Sum_probs=60.1
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||+++....+.+++.+...++ +...+.+. ...++..+++.|+. ++-.||+++ ..+++|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gld 96 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT--NLFGRGMD 96 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEES--SCCSTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCcEEEEC--CchhcCcc
Confidence 346899999999999999999876542 33333332 23456678888885 567799887 58999999
Q ss_pred CCCCCceEEEEeccCC
Q 004385 608 FDRHYGRLVIMFGVPF 623 (757)
Q Consensus 608 f~~~~~r~Vii~glPf 623 (757)
+++ ++.||..++|.
T Consensus 97 i~~--~~~Vi~~d~p~ 110 (172)
T 1t5i_A 97 IER--VNIAFNYDMPE 110 (172)
T ss_dssp GGG--CSEEEESSCCS
T ss_pred hhh--CCEEEEECCCC
Confidence 986 77899988773
No 90
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.52 E-value=0.00047 Score=81.59 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
...+.|.+.+..+. .+...+|.+|+|||||.... ..+.++... .+. +|+++++|+.-.+++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSS-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCC-cEEEEcCcHHHHHHHHHHHHH
Confidence 35789988766553 36789999999999998643 334443332 245 899999999999988876654
No 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00066 Score=80.39 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
...+.|.+.+..+. .+...+|.||+|||||..... .+.++... .+. +|+++|+|+.-.+++.+.|.+
T Consensus 360 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~-~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKD-RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHH-HHHHHHHH-HCC-CEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHH-HHHHHHhC-CCC-eEEEEcCcHHHHHHHHHHHHh
Confidence 35699998776653 367899999999999986433 33333221 145 899999999999999887765
No 92
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.24 E-value=0.0022 Score=66.75 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=72.6
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||+++....+.+.+.+...++ ....+.+. ...+...+++.|+. |+..||+|+ .-+.+|||
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~-------~~~~lhg~l~~~~r~~~~~~f~~----g~~~vLVaT--~va~~Gid 93 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDMSQGERERVMGAFRQ----GEVRVLVAT--DVAARGLD 93 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTC-------CEEEECSCCCTHHHHHHHHHHHH----TSCCEEEEC--STTTCSTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhc----CCceEEEEe--chhhcCcc
Confidence 378999999999999999999876542 22333332 23456778899987 567799987 48999999
Q ss_pred CCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeE-EEEeec
Q 004385 608 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM-MIFADK 680 (757)
Q Consensus 608 f~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~-villD~ 680 (757)
+++ ++.||..++|... ....|.+||.=|.... |. +.++.+
T Consensus 94 i~~--v~~VI~~d~p~s~------------------------------~~y~Qr~GRagR~g~~-G~~i~l~~~ 134 (300)
T 3i32_A 94 IPQ--VDLVVHYRMPDRA------------------------------EAYQHRSGRTGRAGRG-GRVVLLYGP 134 (300)
T ss_dssp CCC--CSEEEESSCCSST------------------------------THHHHHHTCCC------CEEEEEECS
T ss_pred ccc--eeEEEEcCCCCCH------------------------------HHHHHHccCcCcCCCC-ceEEEEeCh
Confidence 996 6789988887521 1224899999997654 54 444443
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.15 E-value=8e-05 Score=70.87 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=57.2
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 530 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 530 ~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
++.+|||+++....+.+.+.++..++ +...+.+. ...++...++.|+. |+..||+++ ..+++|+|+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gid~ 96 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE----GRVNVLVAT--DVAARGIDI 96 (170)
Confidence 46799999999999999998876542 11222221 12345667888875 566789887 489999999
Q ss_pred CCCCceEEEEeccCC
Q 004385 609 DRHYGRLVIMFGVPF 623 (757)
Q Consensus 609 ~~~~~r~Vii~glPf 623 (757)
++ ++.||..++|.
T Consensus 97 ~~--~~~Vi~~~~p~ 109 (170)
T 2yjt_D 97 PD--VSHVFNFDMPR 109 (170)
Confidence 97 77899888774
No 94
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=97.08 E-value=0.0001 Score=79.92 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=0.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||++|....+.+++.+++.++ +...+.+. ...++..+++.|++ ++..||+++ ..+++|+|
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T--~~~~~Gld 324 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS----GSSRILIST--DLLARGID 324 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------eEEEeeCCCCHHHHHHHHHHHHC----CCCcEEEEC--ChhhcCCC
Confidence 346899999999999999998876542 11222221 22345567788875 566788887 48999999
Q ss_pred CCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 608 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 608 f~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
+|+ ++.||..+.|.. .....|++||+-|...+--++++++
T Consensus 325 i~~--~~~Vi~~~~p~s------------------------------~~~~~Qr~GR~~R~g~~g~~~~~~~ 364 (394)
T 1fuu_A 325 VQQ--VSLVINYDLPAN------------------------------KENYIHRIGRGGRFGRKGVAINFVT 364 (394)
T ss_dssp ------------------------------------------------------------------------
T ss_pred ccc--CCEEEEeCCCCC------------------------------HHHHHHHcCcccCCCCCceEEEEEc
Confidence 996 667888776532 1223699999999754422344443
No 95
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=96.92 E-value=0.0026 Score=70.11 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=50.7
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.++||++|....+.+++.++..++ +...+.+ .++..+++.|++ |+-.||+|+. -+..|||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg---~~R~~~~~~F~~----g~~~vLVaT~--v~e~GiDi 239 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGK-------SVVVLNR---KTFEREYPTIKQ----KKPDFILATD--IAEMGANL 239 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEECCS---SSCC------------CCCSEEEESS--STTCCTTC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCC-------CEEEecc---hhHHHHHhhhcC----CCceEEEECC--hhheeecc
Confidence 378999999999999999999886532 3333333 234567888876 6777999874 79999999
Q ss_pred CCCCceEEEEeccCC
Q 004385 609 DRHYGRLVIMFGVPF 623 (757)
Q Consensus 609 ~~~~~r~Vii~glPf 623 (757)
| ++.||..|..+
T Consensus 240 p---v~~VI~~g~~~ 251 (440)
T 1yks_A 240 C---VERVLDCRTAF 251 (440)
T ss_dssp C---CSEEEECCEEE
T ss_pred C---ceEEEeCCccc
Confidence 8 67888766543
No 96
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.90 E-value=0.00022 Score=79.78 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHhhhc-cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeC-CCchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004385 522 LVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSVAR 599 (757)
Q Consensus 522 l~~~~~~-~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~-~~~~~~~~~l~~f~~~~~~~~~avL~gv~~ 599 (757)
+.+++.. ..+.+|||++|....+.++..+...+. ...++.+ .....+..+++.|+. |+..||+|+.
T Consensus 324 l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~-------~v~~lh~~~~~~~R~~~~~~f~~----g~~~iLv~T~- 391 (479)
T 3fmp_B 324 LCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH-------QVALLSGEMMVEQRAAVIERFRE----GKEKVLVTTN- 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCc-------cEEEecCCCCHHHHHHHHHHHHc----CCCcEEEEcc-
Confidence 3334433 347899999999999999988876532 1112211 122345667888876 5667999884
Q ss_pred CcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEee
Q 004385 600 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 679 (757)
Q Consensus 600 G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD 679 (757)
.+++|||||+ ++.||..++|..... + ..+....|.+||.-|....--++++++
T Consensus 392 -~~~~GlDip~--v~~VI~~d~p~~~~~---------------------~---~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 392 -VCARGIDVEQ--VSVVINFDLPVDKDG---------------------N---PDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccccCCcccc--CCEEEEecCCCCCcc---------------------C---CCHHHHHHHhcccccCCCCceEEEEEc
Confidence 8999999997 667887787643211 0 123445799999999765433555555
Q ss_pred cc
Q 004385 680 KR 681 (757)
Q Consensus 680 ~R 681 (757)
+.
T Consensus 445 ~~ 446 (479)
T 3fmp_B 445 SK 446 (479)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 97
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=96.85 E-value=0.00072 Score=78.35 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=79.1
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCC-chhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 530 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 530 ~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
+.|.+|||.|.+..+.+.+.+...+ .+...+.+.- ...+...++.|+. ..|+-.||+|+. .+..|||+
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g-------~~v~~lHG~L~~~~R~~~~~~F~~--~~g~~~VLVATd--i~e~GlDi 388 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRG-------LESAVIYGSLPPGTKLAQAKKFND--PNDPCKILVATD--AIGMGLNL 388 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHC--TTSSCCEEEECG--GGGSSCCC
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcC-------CCeeeeeccCCHHHHHHHHHHHHc--cCCCeEEEEeCc--HHHCCcCc
Confidence 4566888999999999998887643 2333443332 2345567788875 124457898874 89999999
Q ss_pred CCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCC--eeEEEEeecc
Q 004385 609 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD--YGMMIFADKR 681 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D--~G~villD~R 681 (757)
+ ++.||..|+|... .||.-.. . +.+.....+.|.+||+=|...+ .|.++++...
T Consensus 389 -~--v~~VI~~~~~k~~-~~~~G~~--------------~-~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 389 -S--IRRIIFYSLIKPS-INEKGER--------------E-LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -C--BSEEEESCSBC---------------------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred -C--ccEEEECCccccc-cccCCcc--------------c-cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 4 8999999998651 2322100 0 1112345667999999999876 6888887543
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.74 E-value=0.0042 Score=68.93 Aligned_cols=68 Identities=21% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEK 82 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~-~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q 82 (757)
.||..+.+.|++.+..+...+..++ +++|.||.|||||.. +...+.++.... .. +|+++|+|......
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~-~~-~il~~a~T~~Aa~~ 89 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG-ET-GIILAAPTHAAKKI 89 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT-CC-CEEEEESSHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC-Cc-eEEEecCcHHHHHH
Confidence 4566678999999999999998876 999999999999964 344555555442 23 69999999876543
No 99
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.49 E-value=0.0054 Score=71.84 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=57.8
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC---------CchhHHHHHHHHHHhccCCCCeEEEEeecC
Q 004385 530 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ---------DVVETTLALDNYRKACDCGRGAVFFSVARG 600 (757)
Q Consensus 530 ~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~---------~~~~~~~~l~~f~~~~~~~~~avL~gv~~G 600 (757)
++.+|||+++....+.+.+.++....+... ..+...+.+. ...++..+++.|+. |+..||+|+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~-g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~----g~~~VLVaT~-- 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEV-GVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT----GKINLLIATT-- 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-------CCSEEEC--
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccccc-CcceEEEECCCCccCCCCCCHHHHHHHHHHHhc----CCCcEEEEcc--
Confidence 589999999999999999998764110000 1123333332 23456678888875 5667999884
Q ss_pred cccccccCCCCCceEEEEeccCC
Q 004385 601 KVAEGIDFDRHYGRLVIMFGVPF 623 (757)
Q Consensus 601 ~~~EGiDf~~~~~r~Vii~glPf 623 (757)
.++||||+| .++.||..++|.
T Consensus 473 ~~~~GIDip--~v~~VI~~d~p~ 493 (699)
T 4gl2_A 473 VAEEGLDIK--ECNIVIRYGLVT 493 (699)
T ss_dssp SCCTTSCCC--SCCCCEEESCCC
T ss_pred ccccCCccc--cCCEEEEeCCCC
Confidence 899999999 578899888774
No 100
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.29 E-value=0.0051 Score=68.40 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=68.1
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.+|||+++...++.+.+.+... ++--..+..++..+++.|++ |+..||+|+ ..+.+|+|+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~-----------~~~g~~~~~~R~~~~~~F~~----g~~~vLv~T--~~~~~Gldl 410 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIP-----------AITHRTSREEREEILEGFRT----GRFRAIVSS--QVLDEGIDV 410 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCC-----------BCCSSSCSHHHHTHHHHHHH----SSCSBCBCS--SCCCSSSCS
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcc-----------eeeCCCCHHHHHHHHHHHhC----CCCCEEEEc--CchhcCccc
Confidence 4678999999999998888776421 11111223456778899987 566788877 589999999
Q ss_pred CCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCC
Q 004385 609 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD 671 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D 671 (757)
|+ +..||+.+.|.. + ..+.|++||+-|....
T Consensus 411 p~--~~~Vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 411 PD--ANVGVIMSGSGS-A-----------------------------REYIQRLGRILRPSKG 441 (472)
T ss_dssp CC--BSEEEEECCSSC-C-----------------------------HHHHHHHHHSBCCCTT
T ss_pred cc--CcEEEEECCCCC-H-----------------------------HHHHHHHhhccCCCCC
Confidence 86 678998886632 1 2345999999998865
No 101
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.19 E-value=0.0062 Score=67.51 Aligned_cols=122 Identities=17% Similarity=0.110 Sum_probs=72.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.+|||++|....+.+++.++..++ +...+.+. ++..+++.|+. |+..||+|+. -+.+|||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~-------~v~~lh~~---~R~~~~~~f~~----g~~~iLVaT~--v~~~GiDi 252 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK-------KVIQLNRK---SYDTEYPKCKN----GDWDFVITTD--ISEMGANF 252 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEEESTT---CCCCCGGGSSS----CCCSEEEESS--CC---CCC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC-------cEEecCHH---HHHHHHhhccC----CCceEEEECC--hHHhCeec
Confidence 478999999999999999999886542 22233332 22344555553 6778999884 89999999
Q ss_pred CCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccc-hhHHHHHHHHHHhcccccccCCCee-EEEEeec
Q 004385 609 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGD-FLTFDALRQAAQCVGRVIRSKADYG-MMIFADK 680 (757)
Q Consensus 609 ~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~-~~~~~a~~~~~Q~iGR~IR~~~D~G-~villD~ 680 (757)
|+ +.||-.|..+.+..+ ++... .... |-.|.......|.+||+=|.....| +++++..
T Consensus 253 p~---~~VI~~G~~~~~~~~---------~~~~~--~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 253 GA---SRVIDCRKSVKPTIL---------EEGEG--RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp SC---SEEEECCEECCEEEE---------CSSSC--EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CC---CEEEECCcccccccc---------ccccc--ccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 97 889988855433211 00000 0000 1011223556799999999875334 4555544
No 102
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.11 E-value=0.036 Score=64.19 Aligned_cols=76 Identities=18% Similarity=0.134 Sum_probs=61.1
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHH
Q 004385 8 VTVYFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 8 ~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~-~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
..+.=||+| +.-|.+.+.++.+.+..+. +.++-+.||+|||+.. +.+.. .. ++ +++|.|++..+..|+.+|
T Consensus 5 ~~~~~~~~p-~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~--a~~~~-~~---~~-~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 5 FELVSKYQP-QGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV--SNLIK-EV---NK-PTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCCCSCCC-CTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH--HHHHH-HH---CC-CEEEECSSHHHHHHHHHH
T ss_pred ceeecCCCC-CCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH--HHHHH-Hh---CC-CEEEEECCHHHHHHHHHH
Confidence 456678986 9999999999999998885 5778899999999853 33322 21 35 799999999999999999
Q ss_pred HHhhh
Q 004385 87 LKLLH 91 (757)
Q Consensus 87 l~~l~ 91 (757)
|+.+.
T Consensus 77 l~~~~ 81 (661)
T 2d7d_A 77 FKEFF 81 (661)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 99873
No 103
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.00 E-value=0.18 Score=58.19 Aligned_cols=151 Identities=11% Similarity=0.126 Sum_probs=98.6
Q ss_pred ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCC-chhHHHHHHHHHHhccCCCC---eEEEEeecCccc
Q 004385 528 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG---AVFFSVARGKVA 603 (757)
Q Consensus 528 ~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~---avL~gv~~G~~~ 603 (757)
..+..+|||..+-..++.+...+...++ +.+.+.+.. ..++..++++|+. ++. .+|+++ ....
T Consensus 414 ~~~~k~lIFs~~~~~~~~l~~~l~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~----~~~~~~v~L~st--~a~g 480 (644)
T 1z3i_X 414 TTSDKVVLVSNYTQTLDLFEKLCRNRRY-------LYVRLDGTMSIKKRAKIVERFNN----PSSPEFIFMLSS--KAGG 480 (644)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTC-------CEEEECSSCCHHHHHHHHHHHHS----TTCCCCEEEEEG--GGSC
T ss_pred cCCCEEEEEEccHHHHHHHHHHHHHCCC-------CEEEEeCCCCHHHHHHHHHHhcC----CCCCcEEEEEec--cccc
Confidence 3456888888888888888887765442 334454432 3457788999986 332 255555 4789
Q ss_pred ccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEeecccC
Q 004385 604 EGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYS 683 (757)
Q Consensus 604 EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~villD~R~~ 683 (757)
+|+|+++ +..||+...|+- |. ...|++||+-|-....-+.|. |+.
T Consensus 481 ~Glnl~~--a~~Vi~~d~~wn----p~--------------------------~~~Qa~gR~~R~Gq~~~v~v~---~lv 525 (644)
T 1z3i_X 481 CGLNLIG--ANRLVMFDPDWN----PA--------------------------NDEQAMARVWRDGQKKTCYIY---RLL 525 (644)
T ss_dssp TTCCCTT--EEEEEECSCCSS----HH--------------------------HHHHHHTTSSSTTCCSCEEEE---EEE
T ss_pred CCccccc--CCEEEEECCCCC----cc--------------------------HHHHHHHhhhhcCCCCceEEE---EEE
Confidence 9999986 889999887642 21 124999999997766544432 111
Q ss_pred CccccCCCcHHHHhhccccccCCCHHHHHHHHHHHHHHhcCCCCcCCcccccccccHHHHHhhh
Q 004385 684 RHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREFLRKMAQPYDKAGSIGRKTLLSQADLEKMT 747 (757)
Q Consensus 684 ~~~~~~~lp~w~~~~~~~~~~~~~~~~~~~~~~~Ff~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (757)
. ..|+|+-+-.....=+.+.......++ ...+-||.++|...+
T Consensus 526 ~--------------------~~tiEe~i~~~~~~K~~l~~~v~~~~~-~~~~~~~~~~l~~Lf 568 (644)
T 1z3i_X 526 S--------------------TGTIEEKILQRQAHKKALSSCVVDEEQ-DVERHFSLGELRELF 568 (644)
T ss_dssp E--------------------TTSHHHHHHHHHHHHHHTSCCCCSCSS-SCCCSSCHHHHHHHT
T ss_pred E--------------------CCCHHHHHHHHHHHHHHHHHHHhcCcc-hhhcCCCHHHHHHHh
Confidence 1 125677666666666677766665554 345678888887663
No 104
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.99 E-value=0.013 Score=67.37 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHH--HHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKT--la~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
-+.|++.+..+. .++.+++.+|+||||| ++++++++.-... ..+. +|+++++|.....++-+.+...
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~-~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERC-RIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCC-CEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCC-eEEEEeCChhHHHHHHHHHHHH
Confidence 467888765543 5789999999999999 6777776543211 1234 8999999999998887766553
No 105
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.89 E-value=0.019 Score=64.81 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhhc-cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeC---------CCchhHHHHHHHHHHh
Q 004385 516 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 585 (757)
Q Consensus 516 ~~~~~~l~~~~~~-~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~---------~~~~~~~~~l~~f~~~ 585 (757)
..+.+.|.+.... .++.+|||+++....+.+.+.++..+....+ +..++-+ ....++..++++|+..
T Consensus 374 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL---KPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC---CEEECCC-------------------------
T ss_pred HHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce---eeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4555666555443 4589999999999999999999876432211 1111111 1113456678888862
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCCc
Q 004385 586 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 624 (757)
Q Consensus 586 ~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPfp 624 (757)
|+-.||+|+ ..+++|||+| .++.||..++|.-
T Consensus 451 ---g~~~vLvaT--~~~~~GlDlp--~v~~VI~~d~p~s 482 (555)
T 3tbk_A 451 ---GDNNILIAT--SVADEGIDIA--ECNLVILYEYVGN 482 (555)
T ss_dssp ----CCSEEEEC--CCTTCCEETT--SCSEEEEESCCSS
T ss_pred ---CCeeEEEEc--chhhcCCccc--cCCEEEEeCCCCC
Confidence 455699877 4899999999 5889999998753
No 106
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.80 E-value=0.044 Score=63.57 Aligned_cols=70 Identities=20% Similarity=0.070 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~-~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
||+ |++.|.+.+.++.+.+..+. +.++.+.||+|||+.+. .+.. .. ++ +++|.|++..+..|+.+||+.+
T Consensus 6 ~~~-~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a--~~~~-~~---~~-~~lvv~~~~~~A~ql~~el~~~ 76 (664)
T 1c4o_A 6 GPS-PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA--KVIE-AL---GR-PALVLAPNKILAAQLAAEFREL 76 (664)
T ss_dssp SCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH--HHHH-HH---TC-CEEEEESSHHHHHHHHHHHHHH
T ss_pred CCC-CCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH--HHHH-Hh---CC-CEEEEecCHHHHHHHHHHHHHH
Confidence 564 59999999999999998885 57788999999998643 2222 11 35 7999999999999999999987
No 107
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.78 E-value=0.03 Score=64.84 Aligned_cols=70 Identities=19% Similarity=0.266 Sum_probs=47.3
Q ss_pred eCCCCCCCHHHHHHHHHH---------HHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHH
Q 004385 11 YFPYDNIYPEQYSYMLEL---------KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEME 81 (757)
Q Consensus 11 ~FPy~~~r~~Q~~~~~~v---------~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~ 81 (757)
.|||.. .+.|..-+.++ ..++ +++++++.||||+|||+..| ..+... + +.+|++||..+..
T Consensus 124 ~fp~~e-~~d~l~~i~dl~~p~~~~p~ar~l-~rk~vlv~apTGSGKT~~al----~~l~~~---~-~gl~l~PtR~LA~ 193 (677)
T 3rc3_A 124 IFPVLD-CKDDLRKISDLRIPPNWYPDARAM-QRKIIFHSGPTNSGKTYHAI----QKYFSA---K-SGVYCGPLKLLAH 193 (677)
T ss_dssp HCGGGG-CHHHHHHHTBCCCGGGGCHHHHTS-CCEEEEEECCTTSSHHHHHH----HHHHHS---S-SEEEEESSHHHHH
T ss_pred hCCCcC-CHHHHHHHhhccChhhhCHHHHhc-CCCEEEEEcCCCCCHHHHHH----HHHHhc---C-CeEEEeCHHHHHH
Confidence 477665 56665544332 1112 46789999999999998333 333222 3 5689999999999
Q ss_pred HHHHHHHhh
Q 004385 82 KTLAELKLL 90 (757)
Q Consensus 82 Q~~~el~~l 90 (757)
|+.+.++..
T Consensus 194 Qi~~~l~~~ 202 (677)
T 3rc3_A 194 EIFEKSNAA 202 (677)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999987763
No 108
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.77 E-value=0.019 Score=64.99 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhh-ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeC---------CCchhHHHHHHHHHHh
Q 004385 516 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 585 (757)
Q Consensus 516 ~~~~~~l~~~~~-~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~---------~~~~~~~~~l~~f~~~ 585 (757)
..+.+.|.+... ..++.+|||+++....+.+.+.++.......+ +...+-+ ....++..++++|+..
T Consensus 375 ~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 375 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSC---CEEC----------------------------
T ss_pred HHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCccee---eeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 455555555443 34679999999999999999998764211111 1111111 1123456678888862
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCC
Q 004385 586 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 623 (757)
Q Consensus 586 ~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPf 623 (757)
|+-.||+|+. .+++|||+|+ +..||...+|.
T Consensus 452 ---g~~~vLvaT~--~~~~GiDip~--v~~VI~~d~p~ 482 (556)
T 4a2p_A 452 ---KDNRLLIATS--VADEGIDIVQ--CNLVVLYEYSG 482 (556)
T ss_dssp -----CCEEEEEC---------------CEEEEETCCS
T ss_pred ---CceEEEEEcC--chhcCCCchh--CCEEEEeCCCC
Confidence 4556999884 7999999997 88999988763
No 109
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.35 E-value=0.036 Score=64.73 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhc-cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeC---------CCchhHHHHHHHHHHh
Q 004385 516 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 585 (757)
Q Consensus 516 ~~~~~~l~~~~~~-~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~---------~~~~~~~~~l~~f~~~ 585 (757)
..+.+.|.+.... .++.+|||+++....+.+.+.++..+.... .+...+-+ ....++..++++|+..
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~---~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~ 459 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF---LKPGILTGRGKTNQNTGMTLPAQKCILDAFKAS 459 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCS---CCEEC----------------------------
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccc---cceeEEEccCCCccccCCCHHHHHHHHHHHHhc
Confidence 4455555544332 346799999999999999999987642111 12222211 1113455677888751
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCC
Q 004385 586 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 623 (757)
Q Consensus 586 ~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPf 623 (757)
|+-.||+|+. -+.+|||+|+ ++.||..++|.
T Consensus 460 ---g~~~vLVaT~--v~~~GiDip~--v~~VI~~d~p~ 490 (696)
T 2ykg_A 460 ---GDHNILIATS--VADEGIDIAQ--CNLVILYEYVG 490 (696)
T ss_dssp ----CCSCSEEEE--SSCCC---CC--CSEEEEESCC-
T ss_pred ---CCccEEEEec--hhhcCCcCcc--CCEEEEeCCCC
Confidence 4567899885 7999999997 88999999873
No 110
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=95.28 E-value=0.056 Score=62.60 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCCHHHH-----HHHHHHH--HHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHH
Q 004385 16 NIYPEQY-----SYMLELK--RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 16 ~~r~~Q~-----~~~~~v~--~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
.|+|.|. +.+..+. +.+.+++++++.||||+|||++|+.|++..+... +. +++|.+||..+..|+.+.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~-~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RL-RTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEccHHHHHHHHHHHHh
Confidence 3567777 4443333 3445789999999999999999999988765543 45 89999999999999988665
Q ss_pred h
Q 004385 89 L 89 (757)
Q Consensus 89 ~ 89 (757)
.
T Consensus 292 ~ 292 (673)
T 2wv9_A 292 G 292 (673)
T ss_dssp T
T ss_pred c
Confidence 4
No 111
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=95.23 E-value=0.17 Score=51.51 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhc-ccHHHHhcCccEEEeCCC-chhHHHHHHHHHHhccCCCCe-E
Q 004385 517 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGA-V 593 (757)
Q Consensus 517 ~~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~-~~~~~~~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~a-v 593 (757)
.+.+.|.++.. .+..+|||..+-..++.+...+... + .+...+.+.. ..++..++++|+.. .... +
T Consensus 100 ~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g-------~~~~~l~G~~~~~~R~~~i~~F~~~---~~~~v~ 168 (271)
T 1z5z_A 100 RTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELN-------TEVPFLYGELSKKERDDIISKFQNN---PSVKFI 168 (271)
T ss_dssp HHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHC-------SCCCEECTTSCHHHHHHHHHHHHHC---TTCCEE
T ss_pred HHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcC-------CcEEEEECCCCHHHHHHHHHHhcCC---CCCCEE
Confidence 34444544432 4678999999999998888887653 3 1333444432 34577889999872 1333 5
Q ss_pred EEEeecCcccccccCCCCCceEEEEeccCCc
Q 004385 594 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 624 (757)
Q Consensus 594 L~gv~~G~~~EGiDf~~~~~r~Vii~glPfp 624 (757)
|++. ...++|+|+++ +..||+..+|+-
T Consensus 169 L~st--~~~g~Glnl~~--a~~VI~~d~~wn 195 (271)
T 1z5z_A 169 VLSV--KAGGFGINLTS--ANRVIHFDRWWN 195 (271)
T ss_dssp EEEC--CTTCCCCCCTT--CSEEEECSCCSC
T ss_pred EEeh--hhhcCCcCccc--CCEEEEECCCCC
Confidence 5554 47899999986 789999998864
No 112
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.13 E-value=0.047 Score=63.31 Aligned_cols=109 Identities=17% Similarity=0.314 Sum_probs=76.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||++|....+.+.+.+.+.++ +..++.+. +..++..+++.|+. |+-.||+|+ ..+.+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~----g~~~VLvaT--~~l~~GlD 504 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRL----GHYDCLVGI--NLLREGLD 504 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHT----TSCSEEEES--CCCCTTCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhc----CCceEEEcc--ChhhcCcc
Confidence 467899999999999999999987653 22333322 23456678888875 566799887 47999999
Q ss_pred CCCCCceEEEEeccCCcc-cCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeE-EEEeec
Q 004385 608 FDRHYGRLVIMFGVPFQY-TLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM-MIFADK 680 (757)
Q Consensus 608 f~~~~~r~Vii~glPfp~-~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~-villD~ 680 (757)
+|+ ++.||+.+.+... |. ......|.+||.=|.. .|. ++++|+
T Consensus 505 ip~--v~lVI~~d~d~~G~p~--------------------------s~~~~iQr~GRagR~~--~G~~i~~~~~ 549 (664)
T 1c4o_A 505 IPE--VSLVAILDADKEGFLR--------------------------SERSLIQTIGRAARNA--RGEVWLYADR 549 (664)
T ss_dssp CTT--EEEEEETTTTSCSGGG--------------------------SHHHHHHHHGGGTTST--TCEEEEECSS
T ss_pred CCC--CCEEEEeCCcccCCCC--------------------------CHHHHHHHHCccCcCC--CCEEEEEEcC
Confidence 996 8899999875321 11 1234569999999984 354 444444
No 113
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.03 E-value=0.064 Score=64.81 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhh-ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeC---------CCchhHHHHHHHHHHh
Q 004385 516 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 585 (757)
Q Consensus 516 ~~~~~~l~~~~~-~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~---------~~~~~~~~~l~~f~~~ 585 (757)
..+.+.|.+... ..++.+|||+++...++.+.+.++....+..+ +..++-+ ....++..++++|+..
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i---k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~ 692 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC---CCEEC---------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc---ceeEEecCCCcccCCCCCHHHHHHHHHHhhcc
Confidence 455555655443 34579999999999999999998864211000 1111101 1123456778888862
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCC
Q 004385 586 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 623 (757)
Q Consensus 586 ~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPf 623 (757)
|+-.||+|+. -+.||||+|+ ++.||..++|.
T Consensus 693 ---g~~~VLVaT~--~~~eGIDlp~--v~~VI~yD~p~ 723 (936)
T 4a2w_A 693 ---KDNRLLIATS--VADEGIDIVQ--CNLVVLYEYSG 723 (936)
T ss_dssp ----CCSEEEEEC--C------CCC--CSEEEEESCCS
T ss_pred ---CCeeEEEEeC--chhcCCcchh--CCEEEEeCCCC
Confidence 4556999884 7999999997 89999998864
No 114
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.01 E-value=0.13 Score=57.27 Aligned_cols=114 Identities=16% Similarity=0.117 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhc-ccHHHHhcCccEEEeCCC-chhHHHHHHHHHHhccCCCC-eE
Q 004385 517 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG-AV 593 (757)
Q Consensus 517 ~~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~-~~~~~~~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~-av 593 (757)
.+.+.+.+.. ..+..++||..+-..++.+...+... + .+..++.+.. ..++..++++|++. +.. .+
T Consensus 329 ~l~~~l~~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~~~-------~~~~~~~g~~~~~~R~~~~~~F~~~---~~~~vi 397 (500)
T 1z63_A 329 RTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELN-------TEVPFLYGELSKKERDDIISKFQNN---PSVKFI 397 (500)
T ss_dssp HHHHHHHHHH-TTTCCEEEECSCHHHHHHHHHHHHHHHT-------CCCCEEETTSCHHHHHHHHHHHHHC---TTCCCC
T ss_pred HHHHHHHHHH-ccCCcEEEEEehHHHHHHHHHHHHHhhC-------CCeEEEECCCCHHHHHHHHHHhcCC---CCCCEE
Confidence 3444444443 24578999999999988888887653 2 2334444443 34677889999872 122 36
Q ss_pred EEEeecCcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCee
Q 004385 594 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYG 673 (757)
Q Consensus 594 L~gv~~G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G 673 (757)
|+++ ....||+|+++ +..||+...|+-+. ...|++||+.|-....-
T Consensus 398 l~st--~~~~~Glnl~~--~~~vi~~d~~~~~~------------------------------~~~Q~~gR~~R~Gq~~~ 443 (500)
T 1z63_A 398 VLSV--KAGGFGINLTS--ANRVIHFDRWWNPA------------------------------VEDQATDRVYRIGQTRN 443 (500)
T ss_dssp EEEC--CCC-CCCCCTT--CSEEEESSCCSCC---------------------------------CHHHHTTTTTTTTSC
T ss_pred EEec--ccccCCCchhh--CCEEEEeCCCCCcc------------------------------hHHHHHHHHHHcCCCCe
Confidence 6665 47899999985 88999998775321 12489999999776655
Q ss_pred EE
Q 004385 674 MM 675 (757)
Q Consensus 674 ~v 675 (757)
+.
T Consensus 444 v~ 445 (500)
T 1z63_A 444 VI 445 (500)
T ss_dssp EE
T ss_pred eE
Confidence 43
No 115
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.61 E-value=0.053 Score=62.72 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC-C-CCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~-~-~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
...|.|++.+. ..+++++|.||.|||||..++.- ++|.... + ... +|+++|.|+.....+.+.+..+.
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~r-i~~l~~~~~~~~~-~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHR-IAWLMSVENCSPY-SIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHH-HHHHHHTSCCCGG-GEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHH-HHHHHHhCCCChh-hEEEEeccHHHHHHHHHHHHHHh
Confidence 35789998775 23689999999999999886554 3444432 1 124 89999999999988888777653
No 116
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.56 E-value=0.083 Score=62.75 Aligned_cols=98 Identities=14% Similarity=0.183 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhh-ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeC---------CCchhHHHHHHHHHHh
Q 004385 516 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 585 (757)
Q Consensus 516 ~~~~~~l~~~~~-~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~---------~~~~~~~~~l~~f~~~ 585 (757)
..+.+.|.+... ..++.+|||+++...++.+...++.......+ +...+-+ ....++..++++|+..
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~---~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~ 692 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 692 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSC---CCEEC---------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccc---cceEEEecCCcccCCCCCHHHHHHHHHHhhcc
Confidence 445555555433 44589999999999999999998764211000 1111101 1123456778888862
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEeccCC
Q 004385 586 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 623 (757)
Q Consensus 586 ~~~~~~avL~gv~~G~~~EGiDf~~~~~r~Vii~glPf 623 (757)
|+-.||+|+. -+.+|||+|+ ++.||..+.|.
T Consensus 693 ---g~~~vLVaT~--~~~~GIDlp~--v~~VI~yd~p~ 723 (797)
T 4a2q_A 693 ---KDNRLLIATS--VADEGIDIVQ--CNLVVLYEYSG 723 (797)
T ss_dssp ----CCSEEEEEC--C-------CC--CSEEEEESCCS
T ss_pred ---CCceEEEEcC--chhcCCCchh--CCEEEEeCCCC
Confidence 4556999884 7999999997 89999988764
No 117
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=94.45 E-value=0.14 Score=60.74 Aligned_cols=105 Identities=13% Similarity=0.217 Sum_probs=72.1
Q ss_pred ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCC-chhHHHHHHHHHHhccCCCC--eEEEEeecCcccc
Q 004385 528 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG--AVFFSVARGKVAE 604 (757)
Q Consensus 528 ~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~-~~~~~~~l~~f~~~~~~~~~--avL~gv~~G~~~E 604 (757)
..+..+|||...-..++.+...+...++ +...+.+.. ..++..++++|+.. +.+ .+|+++ ....+
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~-------~~~~i~G~~~~~eR~~~i~~F~~~---~~~~~v~LlSt--~agg~ 637 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIKGI-------NFQRLDGTVPSAQRRISIDHFNSP---DSNDFVFLLST--RAGGL 637 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHTC-------CCEEESTTSCHHHHHHHHHTTSST---TCSCCCEEEEH--HHHTT
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhCC---CCCceEEEEec--ccccC
Confidence 3466899999999999999888875542 334554442 34566778888752 122 366655 37899
Q ss_pred cccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEE
Q 004385 605 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMI 676 (757)
Q Consensus 605 GiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~vi 676 (757)
|||++. +..||+...|+- | ....|++||+.|-....-|.|
T Consensus 638 GlNL~~--a~~VI~~D~~wn-p-----------------------------~~~~Qa~gR~~RiGQ~k~V~V 677 (800)
T 3mwy_W 638 GINLMT--ADTVVIFDSDWN-P-----------------------------QADLQAMARAHRIGQKNHVMV 677 (800)
T ss_dssp TCCCTT--CCEEEESSCCSC-S-----------------------------HHHHHHHTTTSCSSCCSCEEE
T ss_pred CCCccc--cceEEEecCCCC-h-----------------------------hhHHHHHHHHHhcCCCceEEE
Confidence 999987 889999987752 2 122489999999766555544
No 118
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.43 E-value=0.17 Score=61.37 Aligned_cols=100 Identities=15% Similarity=0.234 Sum_probs=72.8
Q ss_pred ccCCcEEEEecChHHHHHHHHHHhhc-ccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCC--CeEEEEeecCccc
Q 004385 528 IVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGR--GAVFFSVARGKVA 603 (757)
Q Consensus 528 ~~~gg~Lv~f~Sy~~l~~v~~~~~~~-~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~--~avL~gv~~G~~~ 603 (757)
..++.++||+++....+.+...++.. | .+...+.+. ...++..+++.|+. ++ -.||+++ ...+
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g-------~~~~~lhG~~~~~~R~~~l~~F~~----g~~~~~vLvaT--~v~~ 567 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREG-------IRAAVFHEGMSIIERDRAAAWFAE----EDTGAQVLLCS--EIGS 567 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTC-------CCEEEECTTSCTTHHHHHHHHHHS----TTSSCEEEECS--CCTT
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhC----CCCcccEEEec--chhh
Confidence 35679999999999999999988742 3 233444433 23457788999986 44 5688766 5899
Q ss_pred ccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCe
Q 004385 604 EGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADY 672 (757)
Q Consensus 604 EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~ 672 (757)
+|||+++ +..||+..+|+- | ....|++||+-|.....
T Consensus 568 ~GlDl~~--~~~VI~~d~p~~----~--------------------------~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 568 EGRNFQF--ASHMVMFDLPFN----P--------------------------DLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp CSSCCTT--CCEEECSSCCSS----H--------------------------HHHHHHHHTTSCSSSCS
T ss_pred cCCCccc--CcEEEEecCCCC----H--------------------------HHHHHHhhccccCCCCc
Confidence 9999997 788999888742 1 12359999999976654
No 119
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.37 E-value=0.035 Score=65.27 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=64.9
Q ss_pred cCCcEEEEecChHH--------HHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004385 529 VPDGIVCFFVSYSY--------MDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 599 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~--------l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~ 599 (757)
.++.++||+|+... .+.+++.++... +...+..++.++ ...+...+++.|++ |+-.||+|+.
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~----~~~~~v~~lHG~m~~~eR~~v~~~F~~----G~~~ILVaT~- 647 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV----FPEFKLGLMHGRLSQEEKDRVMLEFAE----GRYDILVSTT- 647 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSC----C---CBCCCCSSSCCSCSHHHHHHHTT----TSSSBCCCSS-
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh----cCCCcEEEEeCCCCHHHHHHHHHHHHC----CCCeEEEECC-
Confidence 45678999986543 444555544300 001122222222 22456778899985 5677998874
Q ss_pred CcccccccCCCCCceEEEEeccCCcccCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEEEEe
Q 004385 600 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 678 (757)
Q Consensus 600 G~~~EGiDf~~~~~r~Vii~glPfp~~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~vill 678 (757)
.+.+|||+|+ ++.||+.+.|--. ...+.|.+||+=|.... |..+++
T Consensus 648 -vie~GIDiP~--v~~VIi~d~~r~~-----------------------------l~~l~Qr~GRaGR~g~~-g~~ill 693 (780)
T 1gm5_A 648 -VIEVGIDVPR--ANVMVIENPERFG-----------------------------LAQLHQLRGRVGRGGQE-AYCFLV 693 (780)
T ss_dssp -CCCSCSCCTT--CCEEEBCSCSSSC-----------------------------TTHHHHHHHTSCCSSTT-CEEECC
T ss_pred -CCCccccCCC--CCEEEEeCCCCCC-----------------------------HHHHHHHhcccCcCCCC-CEEEEE
Confidence 8999999998 7788887755210 12345999999997654 544443
No 120
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=93.61 E-value=0.17 Score=58.66 Aligned_cols=109 Identities=20% Similarity=0.350 Sum_probs=76.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 607 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~-~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiD 607 (757)
.++.+|||++|....+.+.+.+++.++ +..++.+. +..++..+++.|+. |+-.||+|+ +.+.+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~----g~~~VLVaT--~~l~~GlD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRL----GKYDVLVGI--NLLREGLD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHH----TSCSEEEES--CCCSTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhc----CCeEEEEec--chhhCCcc
Confidence 356899999999999999999987653 22333322 23456778888986 566799887 47999999
Q ss_pred CCCCCceEEEEeccCCcc-cCcHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhcccccccCCCeeEE-EEeec
Q 004385 608 FDRHYGRLVIMFGVPFQY-TLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMM-IFADK 680 (757)
Q Consensus 608 f~~~~~r~Vii~glPfp~-~~dp~~~~r~~~l~~~~~~~~~~~~~~~a~~~~~Q~iGR~IR~~~D~G~v-illD~ 680 (757)
+|+ ++.||+.+.+... |.+ .....|.+||+=|.. .|.+ +++|+
T Consensus 511 ip~--v~lVi~~d~d~~G~p~s--------------------------~~~~iQr~GRagR~~--~G~~i~~~~~ 555 (661)
T 2d7d_A 511 IPE--VSLVAILDADKEGFLRS--------------------------ERSLIQTIGRAARNA--EGRVIMYADK 555 (661)
T ss_dssp CTT--EEEEEETTTTCCTTTTS--------------------------HHHHHHHHHTTTTST--TCEEEEECSS
T ss_pred cCC--CCEEEEeCcccccCCCC--------------------------HHHHHHHhCcccCCC--CCEEEEEEeC
Confidence 996 8999999975321 111 233569999999983 3544 44444
No 121
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.90 E-value=0.23 Score=56.41 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHH
Q 004385 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (757)
Q Consensus 13 Py~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (757)
++. ..+.|++.+..+. .+++.+|.+|.|||||...- ..+..+... +. +|+++++|......+-+
T Consensus 187 ~~~-L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~-~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTK-AVADLAESL--GL-EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTT-CCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TC-CEEEEESSHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CC-eEEEecCcHHHHHHhHh
Confidence 444 4789998776654 57899999999999996533 233333332 45 89999999987655443
No 122
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=92.12 E-value=0.18 Score=58.57 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC-CCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~-~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
+.|.|++.+.. .+++++|.|+.|||||..+..-+.......+ ... +|++.|-|+.....+-+.+..+
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~-~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR-HIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 46889887653 3689999999999999986654333332211 234 8999999999888777766654
No 123
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.97 E-value=0.32 Score=46.75 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhC------CcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDAK------GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~------~~~liEaPTGtGKTla~ 52 (757)
+.|.+.+..+.+.+... .++++.+|+|||||...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 47777888888887765 78999999999999743
No 124
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=91.66 E-value=0.3 Score=57.13 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcC-C-CCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 16 ~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~-~-~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
.+.|.|++.+.. .+++++|.|+.|||||.++..- ++|+... + ... +|++.|-|+.....+-+.+..+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~~~~p~-~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEKHVAPW-NILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHH-HHHHHHTTCCCGG-GEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHHh
Confidence 357899886643 3689999999999999986544 4444432 2 224 89999999988777766666543
No 125
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=91.53 E-value=0.62 Score=49.81 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=55.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
.|+.. .|.|+.++..+. ..+.++++.|-+.|||.....-++.++... .+. +|+++.+|..|...++++++.+.
T Consensus 160 ~p~~L-~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~-~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQL-RDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDK-AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECCC-CHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCC-CHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCC-eEEEEeCCHHHHHHHHHHHHHHH
Confidence 56764 999999987663 457799999999999987655544434443 245 89999999999988888777654
No 126
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=91.18 E-value=0.62 Score=53.09 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=56.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhhh
Q 004385 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l~ 91 (757)
.|+.. +|.|+.++..+ ......++++|-|+|||.....-++.++...+ +. +|+++.+|..|...++++++.+.
T Consensus 160 ~~~~l-~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~-~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQL-RDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCCC-CHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCcC-CHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CC-eEEEEECCHHHHHHHHHHHHHHH
Confidence 57764 99999998876 34578999999999999876544444444333 45 89999999999999988777653
No 127
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.12 E-value=0.15 Score=46.39 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 24 ~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.+..+...+.++++.+|+|||||..
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHH
Confidence 3334444455568999999999999963
No 128
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=91.06 E-value=1.3 Score=50.89 Aligned_cols=72 Identities=18% Similarity=0.034 Sum_probs=50.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004385 529 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 608 (757)
Q Consensus 529 ~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~~G~~~EGiDf 608 (757)
.++.+|||+++.+..+.+++.++..++ +...+.+ +... . +|+ .+...||+|+. -+..|||+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~-------~v~~lHG-~l~q-~----er~----~~~~~VLVATd--VaerGIDI 455 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI-------NAVAYYR-GLDV-S----VIP----TIGDVVVVATD--ALMTGYTG 455 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECT-TSCG-G----GSC----SSSCEEEEECT--THHHHCCC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC-------cEEEecC-CCCH-H----HHH----hCCCcEEEECC--hHHccCCC
Confidence 578999999999999999999987542 3233333 2211 1 122 23447999874 89999998
Q ss_pred CCCCceEEEEeccC
Q 004385 609 DRHYGRLVIMFGVP 622 (757)
Q Consensus 609 ~~~~~r~Vii~glP 622 (757)
+ .+.||..|+.
T Consensus 456 d---V~~VI~~Gl~ 466 (666)
T 3o8b_A 456 D---FDSVIDCNTC 466 (666)
T ss_dssp C---BSEEEECCEE
T ss_pred C---CcEEEecCcc
Confidence 3 8999987743
No 129
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.99 E-value=0.18 Score=45.87 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 23 ~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
++...+..+...+.++++.+|+|||||..
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 33444444445668999999999999974
No 130
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.97 E-value=0.39 Score=45.22 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHH-----hCCcEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~-----~~~~~liEaPTGtGKTla~ 52 (757)
.+.|.+....+.+.+. .+..+++-+|+|||||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4688888888777664 4678999999999999743
No 131
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.21 E-value=0.16 Score=56.50 Aligned_cols=34 Identities=18% Similarity=0.063 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.-+|.+.+..+..++..++++++++|+|||||..
T Consensus 24 ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 24 LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 3467888899999999999999999999999974
No 132
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.12 E-value=0.18 Score=52.75 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~ 52 (757)
..+|.+.+..+..++..++++++.+|+|||||...
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 45788888999999999999999999999999743
No 133
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=90.05 E-value=2.5 Score=49.34 Aligned_cols=139 Identities=12% Similarity=0.115 Sum_probs=76.4
Q ss_pred ccchHHhhccCeEEEeccCCCCCc-chhhhhCCCCcccccceeeeccCceeeeEEecCCCCccceec-cccCCChHHHHH
Q 004385 440 LAVKPVFDRFQSVVITSGTLSPID-LYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK-FDMRSDPGVARN 517 (757)
Q Consensus 440 ~~~~~l~~~~~svIltSgTL~p~~-~~~~~Lg~~~~~~~~~~~~~~~~~~~~~vi~~g~~~~~l~s~-f~~r~~~~~~~~ 517 (757)
..++.+|..+..+.-++||..... .|.+..|++.+ .+|.+. . . ....-+ +-+....+-...
T Consensus 367 It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv-------~IPtn~-p-~--------~R~d~~d~v~~~~~~K~~a 429 (853)
T 2fsf_A 367 ITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTV-------VVPTNR-P-M--------IRKDLPDLVYMTEAEKIQA 429 (853)
T ss_dssp EEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEE-------ECCCSS-C-C--------CCEECCCEEESSHHHHHHH
T ss_pred eehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEE-------EcCCCC-C-c--------eeecCCcEEEeCHHHHHHH
Confidence 344678888889999999997643 45555565421 111110 0 0 000000 011222233344
Q ss_pred HHHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEe
Q 004385 518 YGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSV 597 (757)
Q Consensus 518 ~~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv 597 (757)
+.+.|.+.. ..+..+|||+.|...-+.+...++..|+ +....-+. .......+ -.++ ...|+|++|+
T Consensus 430 l~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi-------~~~vLnak-~~~rEa~i--ia~a--gr~G~VtIAT 496 (853)
T 2fsf_A 430 IIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGI-------KHNVLNAK-FHANEAAI--VAQA--GYPAAVTIAT 496 (853)
T ss_dssp HHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTC-------CCEECCTT-CHHHHHHH--HHTT--TSTTCEEEEE
T ss_pred HHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCC-------CEEEecCC-hhHHHHHH--HHhc--CCCCeEEEec
Confidence 444443322 2456799999999999999999987764 11122222 12222211 1122 2356899988
Q ss_pred ecCcccccccCCC
Q 004385 598 ARGKVAEGIDFDR 610 (757)
Q Consensus 598 ~~G~~~EGiDf~~ 610 (757)
. -...|+|++.
T Consensus 497 n--mAgRGtDI~l 507 (853)
T 2fsf_A 497 N--MAGRGTDIVL 507 (853)
T ss_dssp S--CCSSCSCCCT
T ss_pred c--cccCCcCccC
Confidence 4 7899999986
No 134
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.99 E-value=0.94 Score=46.88 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHh-----CCcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDA-----KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~-----~~~~liEaPTGtGKTla~ 52 (757)
+.+.+....+.+.+.. +.++++-+|||||||..+
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 131 ASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 3566666666667765 578999999999999743
No 135
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.87 E-value=0.41 Score=50.29 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHhCC--c-EEEEcCCCCcHHHHHH
Q 004385 17 IYPEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~--~-~liEaPTGtGKTla~L 53 (757)
+||.|.+.+..+..++.+++ | .++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 48999999999999999875 4 8899999999997654
No 136
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=88.35 E-value=6.7 Score=45.84 Aligned_cols=150 Identities=13% Similarity=0.146 Sum_probs=81.9
Q ss_pred cchHHhhccCeEEEeccCCCCC-cchhhhhCCCCcccccceeeeccCceeeeEEecCCCCccceec-cccCCChHHHHHH
Q 004385 441 AVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTK-FDMRSDPGVARNY 518 (757)
Q Consensus 441 ~~~~l~~~~~svIltSgTL~p~-~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~vi~~g~~~~~l~s~-f~~r~~~~~~~~~ 518 (757)
.++.+|..+..+.-++||..+. ..|....|++.+. +|.+ .. . ....-+ +-+....+-...+
T Consensus 359 t~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~-------IPtn-~p-~--------~r~d~~d~v~~~~~~K~~al 421 (844)
T 1tf5_A 359 TFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT-------IPTN-RP-V--------VRDDRPDLIYRTMEGKFKAV 421 (844)
T ss_dssp EHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE-------CCCS-SC-C--------CCEECCCEEESSHHHHHHHH
T ss_pred eHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE-------ecCC-CC-c--------ccccCCcEEEeCHHHHHHHH
Confidence 4467788888899999999764 3455555654211 1111 00 0 000000 0111222223444
Q ss_pred HHHHHHhhhccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCccEEEeCCCchhHHHHHHHHHHhccCCCCeEEEEee
Q 004385 519 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 598 (757)
Q Consensus 519 ~~~l~~~~~~~~gg~Lv~f~Sy~~l~~v~~~~~~~~~~~~~~~~k~if~E~~~~~~~~~~l~~f~~~~~~~~~avL~gv~ 598 (757)
.+.|.+.. ..+..+|||+.|....+.+...++..|+ +...+.+. .......+- .++ ..+|+|++|+.
T Consensus 422 ~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi-------~~~vLhg~-~~~rEr~ii--~~a--g~~g~VlIATd 488 (844)
T 1tf5_A 422 AEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGI-------PHQVLNAK-NHEREAQII--EEA--GQKGAVTIATN 488 (844)
T ss_dssp HHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTC-------CCEEECSS-CHHHHHHHH--TTT--TSTTCEEEEET
T ss_pred HHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCC-------CEEEeeCC-ccHHHHHHH--HHc--CCCCeEEEeCC
Confidence 44443332 2456799999999999999999987764 22222222 222222111 111 23578999884
Q ss_pred cCcccccccCCC-C-----CceEEEEeccC
Q 004385 599 RGKVAEGIDFDR-H-----YGRLVIMFGVP 622 (757)
Q Consensus 599 ~G~~~EGiDf~~-~-----~~r~Vii~glP 622 (757)
-.+.|+|++- + .+..||-.-+|
T Consensus 489 --mAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 489 --MAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp --TSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred --ccccCcCccccchhhhcCCcEEEEecCC
Confidence 7899999982 2 24466666665
No 137
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=88.34 E-value=2.2 Score=51.58 Aligned_cols=23 Identities=13% Similarity=-0.045 Sum_probs=19.8
Q ss_pred CcEEEEecChHHHHHHHHHHhhc
Q 004385 531 DGIVCFFVSYSYMDEIIATWNDS 553 (757)
Q Consensus 531 gg~Lv~f~Sy~~l~~v~~~~~~~ 553 (757)
+.++||++|......+++.++..
T Consensus 538 ~kamVf~~S~~~A~~~~~~l~~~ 560 (1038)
T 2w00_A 538 FNAMLAVSSVDAAKAYYATFKRL 560 (1038)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHhh
Confidence 46999999999999999888754
No 138
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=87.00 E-value=0.75 Score=57.22 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCC----CCCcEEEEEccchhhHHHHHHHHHh
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~----~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
+.|.|.+.+.. .+++++|.|+.|||||.+++-- +.+..... ... +|++.|-|++....+-+.+..
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~r-i~~ll~~~~~~~~~~-~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVER-MIRKITAEENPIDVD-RLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHH-HHHHHSCSSSCCCGG-GEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHH-HHHHHhcCCCCCCcc-ceEEEeccHHHHHHHHHHHHH
Confidence 47899987653 4789999999999999986554 34444332 234 899999998877776665444
No 139
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=86.96 E-value=0.37 Score=51.23 Aligned_cols=32 Identities=38% Similarity=0.344 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHH-----------------hCCcEEEEcCCCCcHHHH
Q 004385 20 EQYSYMLELKRALD-----------------AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~-----------------~~~~~liEaPTGtGKTla 51 (757)
+|.+.+..+..++. ...++++.+|+|||||..
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHH
Confidence 56667777777773 346899999999999984
No 140
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.90 E-value=0.39 Score=49.38 Aligned_cols=34 Identities=29% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHh----------------CCcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~----------------~~~~liEaPTGtGKTla~ 52 (757)
.+|.+.+..+..++.. ..++++.+|+|||||...
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHH
Confidence 3566666677666654 468999999999999743
No 141
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.69 E-value=0.48 Score=44.35 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~liEaPTGtGKTla~ 52 (757)
.++.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34556667777777655 68999999999999753
No 142
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.49 E-value=0.55 Score=48.84 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=24.5
Q ss_pred CHHHHHHHH-HHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYML-ELKRALDAK--GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~-~v~~~l~~~--~~~liEaPTGtGKTla~L 53 (757)
|..|.+-+. .+..++..+ .+++|-+|+|||||...-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 444444443 555666554 589999999999997643
No 143
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.38 E-value=1.4 Score=42.07 Aligned_cols=33 Identities=36% Similarity=0.444 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~--~~~liEaPTGtGKTla~ 52 (757)
++.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 4666777888888776 46999999999999753
No 144
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.22 E-value=0.46 Score=46.39 Aligned_cols=32 Identities=25% Similarity=0.237 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhCC---cEEEEcCCCCcHHHH
Q 004385 20 EQYSYMLELKRALDAKG---HCLLEMPTGTGKTIA 51 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~---~~liEaPTGtGKTla 51 (757)
++.+.+..+.+.+..++ .++|.+|+|+|||..
T Consensus 27 g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSI 61 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 46677778888888876 689999999999964
No 145
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.89 E-value=0.47 Score=44.30 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~liEaPTGtGKTla~ 52 (757)
.++.+.+..+.+.+.. ..++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 3455666677777765 468999999999999753
No 146
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.31 E-value=0.72 Score=45.31 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
..+...++.+|+|+|||.++|-.+..+..+ +. +|+|.++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~-kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DV-KYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC-EEEEEEecc
Confidence 445678889999999999888776665542 45 788876654
No 147
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.25 E-value=0.62 Score=46.86 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 22 ~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.++...+..+...+.+++|.+|+|||||..
T Consensus 16 ~~~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 16 LEVLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 334444444455568999999999999964
No 148
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=84.96 E-value=0.66 Score=47.98 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
.+|.+.+..+...+..+. ++++.+|+|||||...-
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 467888888888888875 89999999999997543
No 149
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.41 E-value=2.1 Score=41.67 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~--~~~~liEaPTGtGKTla~ 52 (757)
.+.+....+...+.. +.++++.+|+|||||...
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 346666777776664 578999999999999754
No 150
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.36 E-value=0.53 Score=48.49 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-----------~~~liEaPTGtGKTla~L 53 (757)
.+|...+..+..++... .++++.+|+|||||...-
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHH
Confidence 46777777777777664 479999999999997543
No 151
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=82.94 E-value=3.3 Score=42.68 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHHHH
Q 004385 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSL 55 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~liEaPTGtGKTla~L~~ 55 (757)
+|.+.+..+..++.+++ +.++.+|.|+|||....+-
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLEL 38 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHH
Confidence 58888999999999876 6889999999998765543
No 152
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.87 E-value=3.3 Score=42.84 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=34.4
Q ss_pred eeeCCCCCCC--HHHHHHHHHHHHHHHhC----CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 9 TVYFPYDNIY--PEQYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 9 ~v~FPy~~~r--~~Q~~~~~~v~~~l~~~----~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
.-.+.|+.+. +.+......+...+... .++++.+|+|||||..+- +++...... +. ++++.+..
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~--~i~~~~~~~-~~-~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQ--AAGNEAKKR-GY-RVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHH--HHHHHHHHT-TC-CEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHH--HHHHHHHHC-CC-EEEEEEHH
Confidence 3345555533 23444444444444443 489999999999997533 232211111 34 67776543
No 153
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.86 E-value=0.94 Score=47.48 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhCCc--EEEEcCCCCcHHHHHHH
Q 004385 20 EQYSYMLELKRALDAKGH--CLLEMPTGTGKTIALLS 54 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~~--~liEaPTGtGKTla~L~ 54 (757)
+|.+.+..+...+..++. +++.+|+|||||....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 578888899999998864 99999999999976554
No 154
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.67 E-value=0.66 Score=48.50 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhC-------CcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~-------~~~liEaPTGtGKTla~ 52 (757)
-+|.+.+..+...+... .+++|.+|+|||||...
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 35666666666666542 48999999999999754
No 155
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.62 E-value=1.6 Score=46.00 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHhCC----cEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDAKG----HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~----~~liEaPTGtGKTla~L 53 (757)
+.+++.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 445555556777777653 69999999999998544
No 156
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=82.52 E-value=1.7 Score=44.46 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCcHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L 53 (757)
.++++.+|+|||||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997543
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.83 E-value=2.8 Score=44.25 Aligned_cols=19 Identities=42% Similarity=0.251 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L 53 (757)
..+++|.+|+|||||...-
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 158
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.80 E-value=0.48 Score=49.71 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~liEaPTGtGKTla~L 53 (757)
-+|.+.+..+..++..+ .++++.+|+|||||...-
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 35677788888888888 689999999999997543
No 159
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.85 E-value=1.1 Score=46.39 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 23 ~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
++...+..+.....+++|.+|||||||..
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 33444444444568999999999999974
No 160
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.69 E-value=0.65 Score=48.68 Aligned_cols=39 Identities=31% Similarity=0.335 Sum_probs=25.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEcCCCCcHHHH
Q 004385 12 FPYDNIYPEQYSYMLELKRALD--AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 12 FPy~~~r~~Q~~~~~~v~~~l~--~~~~~liEaPTGtGKTla 51 (757)
++|.. -.+|..+...+..++. ..+++++.+|+|||||..
T Consensus 21 ~~f~~-i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 21 FPFSA-IVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp CCGGG-SCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHH
T ss_pred CCchh-ccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHH
Confidence 34443 2455555555444443 357899999999999974
No 161
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=79.67 E-value=1.2 Score=45.57 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (757)
...+++.+|+|||||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999753
No 162
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.16 E-value=0.91 Score=46.05 Aligned_cols=18 Identities=44% Similarity=0.503 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (757)
...+++.+|+|||||...
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999743
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=77.76 E-value=1.7 Score=45.80 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhCC--c-EEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~--~-~liEaPTGtGKTla~ 52 (757)
-+|.+.+..+..++..++ + +++.+|+|||||...
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHH
Confidence 457788888888888875 3 689999999999754
No 164
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=77.49 E-value=1.9 Score=42.43 Aligned_cols=50 Identities=22% Similarity=0.107 Sum_probs=29.8
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~e 86 (757)
..|...+|.|++|+|||.-.+--+...+... +. +++|.|-..+ .+++++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~-~v~~~s~E~~-~~~~~~~ 77 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE-PGVFVTLEER-ARDLRRE 77 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC-CEEEEESSSC-HHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC-CceeecccCC-HHHHHHH
Confidence 3456899999999999976554333333322 34 6766654433 2344443
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=77.16 E-value=1.1 Score=46.08 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
+|.+.+..+.+.+..+. ++++.+|+|||||...-
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 57778888888887764 79999999999997543
No 166
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.97 E-value=2.1 Score=42.63 Aligned_cols=34 Identities=32% Similarity=0.343 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~liEaPTGtGKTla 51 (757)
.+.+++-+..+.+.+.. ...+++.+|+|||||..
T Consensus 17 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 17 CDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHH
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHH
Confidence 34455555555444432 35789999999999964
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=76.91 E-value=1.2 Score=48.61 Aligned_cols=35 Identities=37% Similarity=0.432 Sum_probs=28.7
Q ss_pred CHHHHHHH---HHHHHHHHhCC--cEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYM---LELKRALDAKG--HCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~---~~v~~~l~~~~--~~liEaPTGtGKTla~ 52 (757)
.-+|...+ ..+..++..+. ++++.+|+|||||...
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 35777887 78888888886 5999999999999754
No 168
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=76.66 E-value=1.2 Score=46.14 Aligned_cols=33 Identities=33% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHH-------hCCcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALD-------AKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~-------~~~~~liEaPTGtGKTla~ 52 (757)
+|...+..+.+.+. ...+++|.+|+|||||...
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 34445555555443 2268999999999999753
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=76.44 E-value=2.6 Score=41.85 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~liEaPTGtGKTla~ 52 (757)
...+++.+.++...+.. ...+++.+|+|||||...
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHH
Confidence 34455555555554432 246899999999999743
No 170
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=76.18 E-value=2.9 Score=45.71 Aligned_cols=33 Identities=30% Similarity=0.297 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhC----CcEEEEcCCCCcHHHHHH
Q 004385 21 QYSYMLELKRALDAK----GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 21 Q~~~~~~v~~~l~~~----~~~liEaPTGtGKTla~L 53 (757)
.++.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 45 ~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 45 AREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 333344455556554 479999999999997543
No 171
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=76.03 E-value=2 Score=45.65 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (757)
..++++.+|+|||||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 358999999999999743
No 172
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=75.40 E-value=2.7 Score=41.15 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=26.1
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
+..|...+|.+|+|+|||.-.+.-+...+.. +. +++|.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~-~v~~~~ 58 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE-PGIYVA 58 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC-eEEEEE
Confidence 4556789999999999998755444444432 34 555554
No 173
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.29 E-value=2 Score=48.88 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L 53 (757)
-+|...+..+..++..+.++++.+|+|||||..+-
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 36788899999999999999999999999997543
No 174
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.04 E-value=1.7 Score=47.85 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~~~~liEaPTGtGKTla~L 53 (757)
-+|.+.+..+.+.+.. ..++++.+|+|||||...-
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4667777788888854 4689999999999998543
No 175
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.96 E-value=1.9 Score=45.55 Aligned_cols=33 Identities=27% Similarity=0.116 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHh--------------CCcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALDA--------------KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~--------------~~~~liEaPTGtGKTla~ 52 (757)
+|.+.+..+.+.+.. ...+++.+|+|||||...
T Consensus 88 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 88 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 455555666665532 367999999999999753
No 176
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.81 E-value=2.3 Score=43.65 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (757)
+..+++.+|+|||||...
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 467999999999999743
No 177
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.12 E-value=1.8 Score=50.79 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhCC-----------cEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELKRALDAKG-----------HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-----------~~liEaPTGtGKTla~L 53 (757)
+|.+.+..+.+++.... ++++.+|||||||...-
T Consensus 495 Gq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 495 GQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR 539 (758)
T ss_dssp SCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH
Confidence 57788888888887532 69999999999997543
No 178
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=74.11 E-value=3 Score=39.79 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
+...++.+|.|+|||.++|--+..+..+ +. +|++.+++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~-kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIA---KQ-KIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 4678889999999999888766665432 45 888887763
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.24 E-value=2.3 Score=44.42 Aligned_cols=33 Identities=39% Similarity=0.431 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhC-------CcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-------~~~liEaPTGtGKTla~ 52 (757)
+|......+..++..+ .++++.+|+|+|||..+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 4666667777666654 78999999999999743
No 180
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.22 E-value=3.4 Score=39.80 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=20.2
Q ss_pred HHHHHHHHHh---CCcEEEEcCCCCcHHHHHHH
Q 004385 25 MLELKRALDA---KGHCLLEMPTGTGKTIALLS 54 (757)
Q Consensus 25 ~~~v~~~l~~---~~~~liEaPTGtGKTla~L~ 54 (757)
+..+...+.+ ++++++-+|+|||||...++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 4444444443 23689999999999976543
No 181
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.09 E-value=1.9 Score=44.69 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHH----------h----CCcEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELKRALD----------A----KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~----------~----~~~~liEaPTGtGKTla~ 52 (757)
-.+|.+.+..+.+++. . ..++++.+|+|||||...
T Consensus 20 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 20 VAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp SCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred hcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3456666666666652 1 246999999999999753
No 182
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=72.85 E-value=2.6 Score=43.69 Aligned_cols=42 Identities=12% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 30 RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 30 ~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
..+..|...+|.|++|+|||.-.+--+...+.. +. +|+|.+-
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~-~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC-EEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC-eEEEEEC
Confidence 344556789999999999997666555554432 35 6766653
No 183
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=72.63 E-value=1.9 Score=46.03 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHH--------------hCCcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~--------------~~~~~liEaPTGtGKTla~ 52 (757)
-+|...+..+.+.+. ...+++|.+|+|||||...
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 466666667766652 1368999999999999753
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=72.47 E-value=7.1 Score=42.40 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
.++++.+|+|+|||..+-+-+-......+ +. +++|.+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~-~~-~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEP-DL-RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCC-SS-CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCC-CC-eEEEeeHH
Confidence 58999999999999754322211122222 23 67766543
No 185
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=72.30 E-value=4.4 Score=38.23 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
+...++.+|.|+|||..++--+..+... +. ++++.++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~-~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KK-KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TC-EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeecc
Confidence 5678899999999999877555544432 45 788877664
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.06 E-value=2.5 Score=43.31 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
+|.+.+..+.+.+..+. ++++.+|+|+|||...-
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 47777888888888764 69999999999997543
No 187
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.83 E-value=1.8 Score=45.76 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHh---C---C--cEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALDA---K---G--HCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~---~---~--~~liEaPTGtGKTla~ 52 (757)
.++.+-+..+.+.+.. + . +++|.+|+|||||...
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3444444455554443 2 4 7999999999999754
No 188
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=71.35 E-value=2.3 Score=44.40 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004385 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 24 ~~~~v~~~l~~~~~~liEaPTGtGKTl 50 (757)
+...+.-.+..|+.++|-+|||+|||-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 566777788899999999999999996
No 189
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.27 E-value=2.9 Score=46.61 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHh-------------------CCcEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELKRALDA-------------------KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~-------------------~~~~liEaPTGtGKTla~L 53 (757)
+|.+.+..+.+.+.. ...+++.+|+|||||...-
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHH
Confidence 455666666666654 2589999999999997543
No 190
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.06 E-value=2.8 Score=45.72 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
.|..|...+|-|++|+|||.-.|--+...+.. +. +|+|.|--
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~-~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC-EEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC-EEEEEECC
Confidence 44556789999999999998777766666553 45 77776543
No 191
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=70.92 E-value=1.4 Score=46.53 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHH------hCCcEEEEcCCCCcHHHHH
Q 004385 19 PEQYSYMLELKRALD------AKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~------~~~~~liEaPTGtGKTla~ 52 (757)
.++.+-+..+...+. .+.+++|.+|+|||||...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455555666666652 3468999999999999753
No 192
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.53 E-value=4.5 Score=42.74 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004385 25 MLELKRALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 25 ~~~v~~~l~~~~~~liEaPTGtGKTl 50 (757)
...+.-++..|+.++|-+|||+|||-
T Consensus 165 ~~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 165 MSFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHHhcCCEEEEECCCCCCHHH
Confidence 37777788899999999999999996
No 193
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=70.14 E-value=3.2 Score=43.36 Aligned_cols=46 Identities=9% Similarity=0.190 Sum_probs=32.2
Q ss_pred HHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 27 ~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
.+...|..|...+|-|++|+|||.-.+--+...+. .+. +|+|.+--
T Consensus 38 ~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~-~Vl~fSlE 83 (338)
T 4a1f_A 38 NYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDR-GVAVFSLE 83 (338)
T ss_dssp HHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTC-EEEEEESS
T ss_pred HHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCC-eEEEEeCC
Confidence 33345566778999999999999877766665554 245 77766543
No 194
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=69.89 E-value=4.1 Score=40.83 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004385 36 GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (757)
.++++.+|+|||||...
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999754
No 195
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=69.76 E-value=3 Score=45.32 Aligned_cols=32 Identities=31% Similarity=0.249 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHh----------------CCcEEEEcCCCCcHHHH
Q 004385 20 EQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~----------------~~~~liEaPTGtGKTla 51 (757)
+|.+.-..+..++.. .+++++.+|+|||||..
T Consensus 19 Gqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHH
Confidence 456666666665532 36899999999999974
No 196
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=69.43 E-value=3 Score=43.26 Aligned_cols=16 Identities=44% Similarity=0.486 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
+.+++.+|+|||||..
T Consensus 46 ~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYL 61 (322)
T ss_dssp SEEEEESSSSSCHHHH
T ss_pred ceEEEECCCCccHHHH
Confidence 5689999999999974
No 197
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.36 E-value=5 Score=42.12 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHh------CCcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDA------KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~------~~~~liEaPTGtGKTla~L 53 (757)
.++.+-+..+.+.+.. +..++|.+|+|||||...-
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHH
Confidence 3444445555555543 4689999999999997543
No 198
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.09 E-value=2.3 Score=49.89 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-----------~~~liEaPTGtGKTla~ 52 (757)
+|.+.+..+..++... .++++.+|||||||...
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 5667777777776542 26999999999999754
No 199
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=69.04 E-value=3 Score=45.51 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=30.6
Q ss_pred HHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 27 ~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
.+...+..|...+|-||+|+|||.-.+--+...+... +. +|+|.+-
T Consensus 192 ~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~-~vl~~sl 237 (444)
T 2q6t_A 192 QLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GV-GVGIYSL 237 (444)
T ss_dssp HHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CC-CEEEEES
T ss_pred hhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEEC
Confidence 3333455667899999999999987776666555432 34 5666544
No 200
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=68.99 E-value=5.3 Score=44.24 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=28.8
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
++.|++|-++||+|||..+-+-+++.+.....+.++++..=...
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 35799999999999998765444333333322445777765553
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.96 E-value=4.6 Score=43.77 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=17.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~ 59 (757)
+-+++.+|+|||||+. +-|++.
T Consensus 216 rGvLL~GPPGtGKTll--AkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLL--AKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHH--HHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHH
Confidence 5689999999999974 445544
No 202
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.86 E-value=2.4 Score=44.76 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004385 36 GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (757)
..+++.+|+|||||...
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999753
No 203
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.83 E-value=3.3 Score=42.79 Aligned_cols=52 Identities=17% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhCC--c-EEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 19 PEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~~--~-~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
.+|.+.+..+.+.+..+. + +++.+|+|||||...-. ++ ... +. ++++...+.
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~--la--~~l--~~-~~~~i~~~~ 83 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKA--LC--HDV--NA-DMMFVNGSD 83 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHH--HH--HHT--TE-EEEEEETTT
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHH--HH--HHh--CC-CEEEEcccc
Confidence 467777888888888774 4 46677799999976443 32 222 23 666665443
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=68.58 E-value=5.2 Score=43.16 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.+.+...+..+. ...++.++|-+|||+|||-.
T Consensus 152 ~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHH
Confidence 356666666662 24567889999999999964
No 205
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.54 E-value=4.6 Score=43.68 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=16.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~ 59 (757)
+-+++.+|+|||||+. +-|++.
T Consensus 207 rGiLL~GPPGtGKT~l--akAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML--VKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHH--HHHHHH
T ss_pred ceEEEECCCCCCHHHH--HHHHHH
Confidence 3589999999999974 445554
No 206
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=68.43 E-value=3.2 Score=45.37 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHH
Q 004385 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (757)
Q Consensus 28 v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (757)
+...+..|...+|-||+|+|||.-.+.-+...+... +. +|+|.+--.+- +|+..
T Consensus 196 ~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~-~Vl~~s~E~s~-~~l~~ 249 (454)
T 2r6a_A 196 MTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NE-NVAIFSLEMSA-QQLVM 249 (454)
T ss_dssp HHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SC-CEEEEESSSCH-HHHHH
T ss_pred hcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEECCCCH-HHHHH
Confidence 333445567899999999999987766555555432 44 66666543332 34443
No 207
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=68.10 E-value=1.5 Score=49.97 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhCC-------------cEEEEcCCCCcHHHH
Q 004385 20 EQYSYMLELKRALDAKG-------------HCLLEMPTGTGKTIA 51 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-------------~~liEaPTGtGKTla 51 (757)
+|...-..+..++..+. ++++.+|+|||||..
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQM 343 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHH
Confidence 44555555555555554 899999999999973
No 208
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.82 E-value=2.9 Score=49.03 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~--~~~liEaPTGtGKTla~L 53 (757)
--+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 182 iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 182 VIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred ccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 346777888888888654 699999999999998543
No 209
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.59 E-value=2.6 Score=42.22 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004385 36 GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (757)
..+++.+|+|||||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46889999999999743
No 210
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=67.46 E-value=2.1 Score=51.03 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhC-----------CcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~-----------~~~liEaPTGtGKTla~ 52 (757)
+|.+.+..+..++... .++++.+|||||||...
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 5667777777777543 37899999999999743
No 211
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=67.31 E-value=5 Score=40.94 Aligned_cols=23 Identities=13% Similarity=-0.091 Sum_probs=16.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYV 60 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~ 60 (757)
..+++.+|+|||||.. +-+++..
T Consensus 37 ~~lLl~GppGtGKT~l--a~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ--CELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHH--HHHHHHH
T ss_pred eEEEEECCCCCCHHHH--HHHHHHH
Confidence 3678899999999974 4445443
No 212
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=67.02 E-value=4.2 Score=45.13 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 23 ~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+++..+..++..+.+++|-+|||+|||-.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34556666778899999999999999964
No 213
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=66.34 E-value=5.1 Score=43.40 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCCcHHHHH--HHHHHHHHHcCCCCCcEEEEEccchhh
Q 004385 35 KGHCLLEMPTGTGKTIAL--LSLITSYVLSKPENPVKLIYCTRTVHE 79 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~--L~~al~~~~~~~~~~~kvi~~T~T~~l 79 (757)
..|++|-||||+|||.++ +++.+ ... +. ++||.=+.-..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~---~~~--g~-~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG---LLR--GD-RMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH---HHT--TC-EEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH---HHC--CC-cEEEEeCCCch
Confidence 479999999999999985 44322 222 45 77777665544
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=66.30 E-value=2.6 Score=46.57 Aligned_cols=17 Identities=47% Similarity=0.554 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004385 36 GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (757)
..++|.+|+|||||+..
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 57999999999999853
No 215
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=65.66 E-value=4 Score=41.53 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=31.9
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 25 ~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
...+.-.+..|...+|-+|+|+|||.-++.-+...+.. .+. +|+|.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~-~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGK-KVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCC-CEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCC-eEEEEeC
Confidence 44555566778899999999999998666544444332 244 5665543
No 216
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.73 E-value=4.1 Score=44.42 Aligned_cols=33 Identities=30% Similarity=0.162 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHH--------------hCCcEEEEcCCCCcHHHHH
Q 004385 20 EQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~--------------~~~~~liEaPTGtGKTla~ 52 (757)
+|.+....+.+++. ....+++.+|+|||||...
T Consensus 138 G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 138 GLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 45566666666552 1257899999999999743
No 217
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=64.49 E-value=5 Score=43.48 Aligned_cols=44 Identities=20% Similarity=0.102 Sum_probs=32.3
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
+..++.||.|+|||....-- +. .. +++|.|+|+++.+.+.+.++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~----~~----~~-~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSR----VN----FE-EDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHH----CC----TT-TCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHH----hc----cC-CeEEEeCCHHHHHHHHHHhh
Confidence 46789999999999865321 11 24 68999999999877666543
No 218
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=63.76 E-value=4.8 Score=41.65 Aligned_cols=28 Identities=21% Similarity=0.099 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 24 ~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.+..+.+++..+..++|.+|.|+|||..
T Consensus 20 el~~L~~~l~~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 20 ESRKLEESLENYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HHHHHHHHHHHCSEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCcCCHHHH
Confidence 3445566666678999999999999974
No 219
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.47 E-value=7.3 Score=39.13 Aligned_cols=17 Identities=35% Similarity=0.175 Sum_probs=14.8
Q ss_pred cEEEEcCCCCcHHHHHH
Q 004385 37 HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L 53 (757)
++++-+|+|||||+...
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999998654
No 220
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=62.67 E-value=3.3 Score=45.89 Aligned_cols=42 Identities=5% Similarity=-0.069 Sum_probs=28.2
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
.+..|...+|.||+|+|||.-.+--+...+... +. +|+|.+-
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~-~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GK-KVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CC-CEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CC-cEEEEec
Confidence 455667899999999999987666555544321 44 5655543
No 221
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=62.43 E-value=7.8 Score=37.26 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=25.1
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
.+..|...+|-+|+|+|||.-...-+...+.. +. +|+|.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~-~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GD-PCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TC-CEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CC-eEEEEE
Confidence 34567789999999999996544433233322 34 566554
No 222
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=62.36 E-value=6.2 Score=35.71 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=16.0
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.++.+++-+|+|+|||.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678999999999999864
No 223
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=62.25 E-value=7.9 Score=38.21 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~liEaPTGtGKTla 51 (757)
.+.+.+-+..+...+.. ...+++.+|+|||||..
T Consensus 21 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 21 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred cHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 34555555555554432 23489999999999964
No 224
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.10 E-value=6.4 Score=52.33 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.+.-..+..-+..++..++++++.+|||||||+.
T Consensus 1250 T~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1250 TIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHH
T ss_pred ccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHH
Confidence 4555666667777888999999999999999974
No 225
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.09 E-value=3.6 Score=43.89 Aligned_cols=35 Identities=14% Similarity=0.059 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHH-HHHH-----hCCcEEE--EcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELK-RALD-----AKGHCLL--EMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~-~~l~-----~~~~~li--EaPTGtGKTla~ 52 (757)
|..+.+.+.... .... .+.+++| .+|+|+|||...
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555554444 3332 2347888 999999999743
No 226
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=61.10 E-value=4.1 Score=39.06 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=18.8
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~ 54 (757)
.+..|...+|-+|+|+|||.-.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHH
Confidence 344567899999999999975544
No 227
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=61.05 E-value=5.9 Score=38.58 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=19.4
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTIALLSLI 56 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~a 56 (757)
+..|...+|-+|+|+|||.-.+.-+
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHH
Confidence 3456789999999999998665543
No 228
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=59.98 E-value=4.6 Score=46.08 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHH
Q 004385 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (757)
Q Consensus 17 ~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~ 83 (757)
+.+.|.+....+.++. .++.+|.|+-|.|||. ++--+++.+. . +++|+.||+.-...+
T Consensus 176 ~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa-~lG~~~a~~~-----~-~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 176 PQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSA-LAGQLISRIA-----G-RAIVTAPAKASTDVL 233 (671)
T ss_dssp CCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHH-HHHHHHHHSS-----S-CEEEECSSCCSCHHH
T ss_pred CCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHH-HHHHHHHHHH-----h-CcEEECCCHHHHHHH
Confidence 4678888877666654 3678999999999994 3444444332 3 579999998765443
No 229
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.83 E-value=4.8 Score=43.60 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~ 59 (757)
+.+++-+|+|||||+. +-|++.
T Consensus 216 rGvLLyGPPGTGKTll--AkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLL--ARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHH--HHHHHH
T ss_pred CeeEEECcCCCCHHHH--HHHHHH
Confidence 5689999999999974 445554
No 230
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=59.69 E-value=10 Score=42.49 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
..|++|-+.||+|||.++-.-+++.+..+....+++++.=+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4699999999999998765544444433322344788776664
No 231
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.64 E-value=3.4 Score=43.15 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHH-HhC--CcEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELKRAL-DAK--GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~~~l-~~~--~~~liEaPTGtGKTla~L 53 (757)
+|.+.+..+..++ ..+ .++++.+|+|+|||...-
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 5777777887777 554 469999999999997544
No 232
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=59.59 E-value=10 Score=36.20 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=29.4
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~ 73 (757)
+=.+++.+++-.|+|.|||-+.+.-++..+.+ +. ||.+.
T Consensus 24 ~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~-rV~~v 62 (196)
T 1g5t_A 24 AQEERGIIIVFTGNGKGKTTAAFGTAARAVGH---GK-NVGVV 62 (196)
T ss_dssp ---CCCCEEEEESSSSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEE
Confidence 33456799999999999999999888776642 45 78887
No 233
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.26 E-value=5.2 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~ 59 (757)
+.+++-+|+|||||+. +-|++.
T Consensus 183 rGvLL~GPPGTGKTll--AkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLL--ARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHH--HHHHHH
T ss_pred CceEEeCCCCCCHHHH--HHHHHH
Confidence 5799999999999974 445543
No 234
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=58.30 E-value=9.9 Score=36.76 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.6
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
|...++.+|-|+|||.++|--+..+..+ +. +|++.++.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~-kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQ-HAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 3466788999999999988777766543 45 788877654
No 235
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=58.00 E-value=6.4 Score=37.68 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=14.7
Q ss_pred cEEEEcCCCCcHHHHHHH
Q 004385 37 HCLLEMPTGTGKTIALLS 54 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~ 54 (757)
..++.+|.|||||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 568999999999986543
No 236
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=57.74 E-value=4.5 Score=38.08 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=18.6
Q ss_pred HHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 28 LKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 28 v~~~l~~~~~~liEaPTGtGKTla 51 (757)
....+..+..+++++|+|+|||-.
T Consensus 5 ~~~~~~~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 5 FMEDLRKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHHHHHHSCEEEEEECTTSSHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHH
Confidence 334455678899999999999963
No 237
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=57.72 E-value=9.1 Score=41.97 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004385 36 GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (757)
+.+++.+|+|||||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46899999999999743
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=57.50 E-value=4.2 Score=37.98 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.|+.++|.+|+|+|||-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 357889999999999963
No 239
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=57.37 E-value=12 Score=36.06 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=25.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHH
Q 004385 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~ 52 (757)
..|-..+|...... +..|+...|-+|.|+|||.-+
T Consensus 5 i~pk~~g~~~~l~~----i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDA----IDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHH----HHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHh----ccCCCEEEEECCCCCCHHHHH
Confidence 34445667655444 578999999999999998643
No 240
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.00 E-value=18 Score=48.09 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL 55 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~ 55 (757)
-+.+..-+..+++++.....+++.+|||+|||.++=+-
T Consensus 906 ~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHH
Confidence 56666667777888888888999999999999975443
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=56.82 E-value=10 Score=38.65 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
++.+++-+|+|+|||-....-+..+... .+. +|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~-~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE--KHK-KIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT--TCC-CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCC-EEEEEe
Confidence 4578889999999997554433333321 244 565553
No 242
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.77 E-value=4.1 Score=38.62 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.2
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..|..+.|.+|+|+|||-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 4578899999999999963
No 243
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.52 E-value=15 Score=36.83 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~liEaPTGtGKTla 51 (757)
.+.+++-+..+...+.. ...++|.+|+|||||..
T Consensus 45 ~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 45 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred hHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 34555555555555432 13489999999999964
No 244
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=55.50 E-value=18 Score=36.30 Aligned_cols=27 Identities=30% Similarity=0.358 Sum_probs=20.8
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTIALLSLITS 58 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~al~ 58 (757)
+..|...+|-+|+|+|||.-.+.-+..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 445678999999999999876655443
No 245
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.41 E-value=8.7 Score=51.70 Aligned_cols=34 Identities=24% Similarity=0.235 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
...=..+..-+...+..++++++.+|||||||..
T Consensus 1287 T~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1287 TVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred chHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 4444556666677788899999999999999953
No 246
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=55.30 E-value=4.8 Score=38.64 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..++|.+|+|+|||-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 467889999999999963
No 247
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=55.14 E-value=9.2 Score=40.24 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=26.1
Q ss_pred CHHHHHHHHHH-----HHHHHhCCc--EEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLEL-----KRALDAKGH--CLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v-----~~~l~~~~~--~liEaPTGtGKTla~L 53 (757)
...|.++.+.+ ..+++.|.+ ++.=+.||+|||..+.
T Consensus 61 ~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 45788877763 345556665 5778999999998864
No 248
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=54.39 E-value=8.6 Score=39.78 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=18.5
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al 57 (757)
.|...+|.+|+|+|||.-.+.-+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 356889999999999986655443
No 249
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.13 E-value=6.8 Score=42.18 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHH-HHh-----------CCcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 18 YPEQYSYMLELKRA-LDA-----------KGHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 18 r~~Q~~~~~~v~~~-l~~-----------~~~~liEaPTGtGKTla~L~~al~~ 59 (757)
...|++-+.+.... +.. .+-+++.+|+|||||+. +-|++.
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlL--AkAiA~ 238 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLL--AKAVAN 238 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHH--HHHHHH
Confidence 35666665555443 221 25689999999999974 445543
No 250
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=53.96 E-value=5.3 Score=38.22 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=15.0
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004385 34 AKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (757)
.++.++|.+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 46788999999999996
No 251
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=53.48 E-value=6.9 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~--~~~~liEaPTGtGKTla~L 53 (757)
+|.+.+..+.+.+.. +.++++.+|+|||||...-
T Consensus 190 Gr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 190 GREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 455667777777765 4689999999999997543
No 252
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=53.19 E-value=5.4 Score=37.84 Aligned_cols=33 Identities=21% Similarity=0.076 Sum_probs=16.1
Q ss_pred HHHHHHHH-HHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 19 PEQYSYML-ELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 19 ~~Q~~~~~-~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
|++..+.. .|--.+..+..++|.+|+|+|||-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHH
Confidence 44444433 2333455678999999999999974
No 253
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=52.99 E-value=4.2 Score=38.86 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.6
Q ss_pred HHHhCCcEEEEcCCCCcHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTl 50 (757)
.+..+..+++.+|+|+|||-
T Consensus 8 ~~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHH
T ss_pred ccccCCEEEEECCCCCCHHH
Confidence 44567889999999999996
No 254
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.93 E-value=3.3 Score=42.97 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~ 52 (757)
|..+.+. +.+ +.. ..++|.+|.|+|||...
T Consensus 18 R~~el~~---L~~-l~~-~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEK---LKG-LRA-PITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHH---HHH-TCS-SEEEEEESTTSSHHHHH
T ss_pred hHHHHHH---HHH-hcC-CcEEEECCCCCCHHHHH
Confidence 5555544 444 444 69999999999999743
No 255
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=52.56 E-value=5 Score=38.02 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.7
Q ss_pred HhCCcEEEEcCCCCcHHH
Q 004385 33 DAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTl 50 (757)
..+..++|.+|+|+|||-
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457789999999999986
No 256
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.55 E-value=6.5 Score=42.76 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=17.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~ 59 (757)
+-+++.+|+|||||+. +-|++.
T Consensus 244 rGILLyGPPGTGKTlL--AkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLC--ARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHHH--HHHHHH
T ss_pred CceEeeCCCCCcHHHH--HHHHHh
Confidence 5789999999999974 445554
No 257
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=52.43 E-value=4 Score=40.99 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=17.4
Q ss_pred HHhCCcEEEEcCCCCcHHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla 51 (757)
+..|+.++|-+|||+|||-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 66778999999999999964
No 258
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=52.22 E-value=6.9 Score=40.74 Aligned_cols=16 Identities=38% Similarity=0.322 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|-+|||+|||-.
T Consensus 41 ~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRL 56 (339)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4789999999999964
No 259
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=52.09 E-value=19 Score=35.06 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=24.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEE-EEEccch
Q 004385 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRTV 77 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kv-i~~T~T~ 77 (757)
++++-++.|+|||...+.-+...+.. +. +| ++.+-+|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~---G~-~V~v~d~D~q 45 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ---GV-RVMAGVVETH 45 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT---TC-CEEEEECCCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CC-CEEEEEeCCC
Confidence 58889999999999877665554432 33 45 4444443
No 260
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=51.38 E-value=6.1 Score=37.60 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.++.++|-+|+|+|||-.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999963
No 261
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=50.79 E-value=14 Score=35.09 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
++..++-+|.|+|||.-+|-.+-.|..+ +. +|+|.|+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~-kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY-KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC-eEEEEccc
Confidence 5678999999999997766655444432 35 78888765
No 262
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=50.77 E-value=5.9 Score=36.09 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
.+++.+|+|+|||-
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 263
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=50.72 E-value=7.6 Score=40.00 Aligned_cols=17 Identities=29% Similarity=0.311 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..++|-+|||+|||-.
T Consensus 3 ~~~i~i~GptgsGKt~l 19 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKT 19 (322)
T ss_dssp CEEEEEECCTTSCHHHH
T ss_pred CcEEEEECCCcCCHHHH
Confidence 34678899999999964
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=50.65 E-value=7.8 Score=37.09 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|.+|||+|||-.
T Consensus 35 ~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 35 LGVLITGDSGVGKSET 50 (205)
T ss_dssp EEEEEECCCTTTTHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 4578999999999853
No 265
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.31 E-value=15 Score=40.55 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHh-----------CCcEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~-----------~~~~liEaPTGtGKTla~ 52 (757)
...+++-+..+...+.. .+.++|.+|+|||||..+
T Consensus 36 ~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 36 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 34555555566555543 134899999999999743
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.65 E-value=6.8 Score=36.46 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..+++++|+|+|||-.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 46789999999999963
No 267
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=49.57 E-value=19 Score=44.36 Aligned_cols=48 Identities=29% Similarity=0.383 Sum_probs=32.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcC--------C-CCCcEEEEEccchhhHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSK--------P-ENPVKLIYCTRTVHEMEKTL 84 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~--------~-~~~~kvi~~T~T~~l~~Q~~ 84 (757)
+..+|+|+-|||||.++-.=.+...... + ... +|++.|=|+.-...+-
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~-~ILvvTFT~aAA~EMr 73 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVE-ELLVVTFTEAATAELR 73 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGG-GEEEEESCHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHH-HEEEEeccHHHHHHHH
Confidence 5669999999999987554444433321 1 124 7999999986544443
No 268
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=49.34 E-value=15 Score=37.70 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIALLSLIT 57 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al 57 (757)
+...+|.+|+|+|||.-.+--+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999986655443
No 269
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=49.28 E-value=20 Score=37.66 Aligned_cols=41 Identities=15% Similarity=0.096 Sum_probs=27.6
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
.+...+|.+|+|+|||.-.+.-+...+.. +. +++|.+--++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyid~E~s 102 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAEHA 102 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeCCCC
Confidence 45688999999999998776655554432 34 5665554443
No 270
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=49.23 E-value=15 Score=38.34 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
..+...+|.+|+|+|||.-.+.-+...+.. +. +++|.+--+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyi~~E~ 99 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAA---GG-IAAFIDAEH 99 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC-eEEEEECCC
Confidence 356789999999999998766655544432 34 555554433
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.02 E-value=14 Score=38.63 Aligned_cols=24 Identities=21% Similarity=-0.074 Sum_probs=18.4
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al 57 (757)
.|...+|-+|+|+|||.-.+.-+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999986665444
No 272
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=48.79 E-value=7.2 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
..++++.+|+|+|||-.
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56889999999999964
No 273
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=48.06 E-value=8.3 Score=38.36 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHh---CCcEEEEcCCCCcHHHH
Q 004385 22 YSYMLELKRALDA---KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 22 ~~~~~~v~~~l~~---~~~~liEaPTGtGKTla 51 (757)
......+--.+.. +..++|-+|+|+|||-.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHH
Confidence 3467777777777 99999999999999974
No 274
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=47.89 E-value=32 Score=32.28 Aligned_cols=70 Identities=6% Similarity=0.051 Sum_probs=48.9
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHH
Q 004385 10 VYFPYDNIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (757)
Q Consensus 10 v~FPy~~~r~~Q~~~~~~v~~~l~~~-~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~ 83 (757)
+.||-.+ -|-+..+..++...+... ...+|.++-|++||-..+...+..++.. |+ +|.+.++|..-...+
T Consensus 26 ~~~~~~~-~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr-~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 26 TVHPEKS-VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GR-EVQIIAADRRSQMNM 96 (189)
T ss_dssp CCCGGGC-CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TC-CEEEECSTTHHHHHH
T ss_pred ccCCcCc-cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--Ce-EEEEEcCchHHHHHH
Confidence 4577654 344555555665555444 6889999999999999766655555544 67 999999999855443
No 275
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=47.87 E-value=18 Score=37.98 Aligned_cols=41 Identities=12% Similarity=-0.048 Sum_probs=27.3
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
.|...+|-+|+|+|||.-.+..+...+. .+. +|+|.+.-++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg-~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGG-VAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTC-CEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCC-eEEEEecccc
Confidence 4567899999999999876665544443 234 6666654444
No 276
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=47.80 E-value=7.6 Score=36.72 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.3
Q ss_pred CcEEEEcCCCCcHHH
Q 004385 36 GHCLLEMPTGTGKTI 50 (757)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (757)
+.++|.+|+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999996
No 277
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=47.76 E-value=17 Score=38.36 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.1
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
.+...+|-+|+|+|||.-.+.-+...+.. +. +|+|.+--+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~-~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG-TCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC-eEEEEECCC
Confidence 45678889999999998766555444432 34 555554444
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=47.61 E-value=9 Score=35.79 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHhCCcEEEEcCCCCcHHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla 51 (757)
+..+..+++++|+|+|||-.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999963
No 279
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=47.39 E-value=6.1 Score=37.80 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.4
Q ss_pred CCcEEEEcCCcChh
Q 004385 227 KESVVVFDEAHNID 240 (757)
Q Consensus 227 ~~~ilI~DEAHnl~ 240 (757)
+..+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 48999999999983
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=47.37 E-value=7.8 Score=37.47 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.9
Q ss_pred HHHHHHHhCCcEEEEcCCCCcHHH
Q 004385 27 ELKRALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 27 ~v~~~l~~~~~~liEaPTGtGKTl 50 (757)
.|--.+..|+.+.|-+|+|+|||-
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -------CCCCEEEECSTTSSHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHH
Confidence 444456778999999999999996
No 281
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=47.33 E-value=11 Score=44.88 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~~--~~~liEaPTGtGKTla~L 53 (757)
-+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 45667778888888765 589999999999997543
No 282
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=47.00 E-value=20 Score=36.99 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=29.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhh
Q 004385 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l 79 (757)
..+|-+|+|+|||.-.|-.+...++.. .+. +++|.+.-++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-~g~-~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-PDA-VCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-TTC-EEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-CCc-eEEEEeccchh
Confidence 678899999999987777666655432 145 77777766654
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=46.81 E-value=7.8 Score=35.29 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.0
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.++|++|.|+|||-.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 284
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=45.82 E-value=27 Score=38.32 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=39.2
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHhh
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~l 90 (757)
.+....+.+-||+|||+. ++.+. . .. ++ +++|.|++..+..|+.+||+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~-~-~~--~~-p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA-E-RH--AG-PVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH-H-HS--SS-CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH-H-Hh--CC-CEEEEeCCHHHHHHHHHHHHhh
Confidence 456889999999999975 33332 2 22 35 7999999999999999999976
No 285
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=45.44 E-value=15 Score=39.08 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=30.2
Q ss_pred EcCeeeeCCCCCCCHH-----HHHHHHHHHHH---HHhCCcEEEEcCCCCcHHHHH
Q 004385 5 LEDVTVYFPYDNIYPE-----QYSYMLELKRA---LDAKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 5 i~~~~v~FPy~~~r~~-----Q~~~~~~v~~~---l~~~~~~liEaPTGtGKTla~ 52 (757)
.++++..||-+.++.. -.+.--.+.+. +..|+.+.|-+|+|+|||.-.
T Consensus 136 Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 136 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred eccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 3566667776643333 12222233333 345789999999999999754
No 286
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=45.37 E-value=6.5 Score=36.57 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.9
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..+++++|.|+|||-.
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 355789999999999963
No 287
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=45.33 E-value=8.5 Score=39.51 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 24 ~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
....|--.+..|+.+.|-+|+|+|||.-
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHH
Confidence 4555555667789999999999999863
No 288
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=45.12 E-value=16 Score=45.01 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 38 ~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
-+|-|+.|||||..++.-+.......+.+. +|++.+|.+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~-~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGK-PIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSS-CEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCC-cEEEEecCcc
Confidence 478999999999987765433333444446 8999955543
No 289
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.05 E-value=8.6 Score=37.32 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=16.3
Q ss_pred HHHHhCCcEEEEcCCCCcHHHH
Q 004385 30 RALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 30 ~~l~~~~~~liEaPTGtGKTla 51 (757)
..+..|..++|-+|+|+|||--
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHH
T ss_pred ccCCCCcEEEEECCCCCCHHHH
Confidence 3566788999999999999973
No 290
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=44.59 E-value=12 Score=38.46 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|.+|||+|||-.
T Consensus 11 ~~i~i~GptgsGKt~l 26 (316)
T 3foz_A 11 KAIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCccCHHHH
Confidence 3578899999999964
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=44.18 E-value=11 Score=34.73 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+.++++.+|+|+|||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 356899999999999974
No 292
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.14 E-value=8.5 Score=37.28 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=14.8
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
.....+++++|+|+|||-.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp --CCEEEEEECTTSSHHHH
T ss_pred ccCcEEEEECCCCCCHHHH
Confidence 3456799999999999973
No 293
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.87 E-value=9.2 Score=36.04 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..+++++|.|+|||-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 356789999999999963
No 294
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=43.45 E-value=21 Score=37.81 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=26.7
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
.+.|.+|-+|||+|||...-.-+... .. .+. +|++.-+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~--~~~-~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM--QGS-RVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT--TTC-CEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH--CCC-EEEEEeCCcC
Confidence 46799999999999997544332222 22 245 7877765543
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=43.44 E-value=10 Score=34.73 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.7
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004385 34 AKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (757)
.+..++|.+|.|+|||-
T Consensus 3 ~~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCCEEEECCTTSCHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 35689999999999996
No 296
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=43.31 E-value=11 Score=37.04 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|.+|.|+|||-.
T Consensus 30 ~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4689999999999963
No 297
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=42.99 E-value=8.4 Score=37.16 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=14.6
Q ss_pred hCCcEEEEcCCCCcHHH
Q 004385 34 AKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTl 50 (757)
....+++++|.|+|||-
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34678999999999996
No 298
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=42.74 E-value=22 Score=34.48 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=20.0
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSL 55 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~ 55 (757)
.+..|+...|-+|+|+|||.-+.+-
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 4567889999999999999755443
No 299
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=42.58 E-value=11 Score=37.99 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.3
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+++.+|+|||||..
T Consensus 46 GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEEESSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 489999999999974
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=42.41 E-value=9.8 Score=40.02 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=15.9
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..++.++|-+|||+|||-.
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4457899999999999964
No 301
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=41.86 E-value=9.7 Score=35.79 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
.++|++|+|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999996
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=41.71 E-value=9.8 Score=34.89 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.0
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+++.+|+|+|||-.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578999999999963
No 303
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=41.34 E-value=11 Score=39.90 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.4
Q ss_pred HHHhCCcEEEEcCCCCcHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTl 50 (757)
.+..+..+++.+|+|+|||.
T Consensus 165 ~i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHH
T ss_pred ccCCCCEEEEECCCCCCHHH
Confidence 34456789999999999986
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=41.09 E-value=9.5 Score=35.44 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
.++|++|.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999996
No 305
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=41.02 E-value=39 Score=36.48 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEE-EEEccc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kv-i~~T~T 76 (757)
..+++-+|+|+|||-....-|..++ . .+. +| ++++-|
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~--~-~G~-kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ--K-RGY-KVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH--T-TTC-CEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH--H-CCC-eEEEEeCCC
Confidence 3678899999999986554433332 2 244 44 555444
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=40.86 E-value=12 Score=35.01 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
+.+.|-+|+|+|||-.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5678999999999963
No 307
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=40.70 E-value=11 Score=34.51 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..+++.+|+|+|||-.
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45788999999999963
No 308
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.59 E-value=17 Score=32.75 Aligned_cols=24 Identities=25% Similarity=0.140 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~ 61 (757)
+..+|-+|+|+|||-. +-|+.|+.
T Consensus 24 g~~~I~G~NGsGKSti--l~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL--LDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHH
Confidence 4678999999999974 45666655
No 309
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.49 E-value=11 Score=35.83 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=16.4
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla 51 (757)
.+..|+.+.|-+|+|+|||-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 567889999999999999964
No 310
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=40.32 E-value=6.7 Score=36.23 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.9
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..|+.+.+-+|+|+|||--
T Consensus 7 ~~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp ESSEEEEEECCTTSCHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3567889999999999964
No 311
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=40.30 E-value=25 Score=33.96 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=28.7
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
..|..-++.+|-|+|||..+|-.+..+..+ +. ++++.++...
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~-kvli~kp~~D 67 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA---KQ-KVVVFKPAID 67 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEEC--
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc---CC-ceEEEEeccC
Confidence 456778899999999998777665555432 35 7888877654
No 312
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=40.06 E-value=6.9 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.2
Q ss_pred HHhCCcEEEEcCCCCcHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTl 50 (757)
+..|..++|-+|+|+|||-
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 4467789999999999996
No 313
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=39.65 E-value=10 Score=35.96 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..+++++|.|+|||-.
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45789999999999973
No 314
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=39.52 E-value=19 Score=37.58 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHHH---hCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKRALD---AKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~---~~~--~~liEaPTGtGKTla~L 53 (757)
-..|.++.+.|...++ +|- .++.=+.||+|||..++
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4568888887765443 343 45668999999999874
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=39.28 E-value=10 Score=36.72 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=12.0
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..|..+.|-+|+|+|||-.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567889999999999964
No 316
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=39.20 E-value=16 Score=40.82 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L 53 (757)
+.++++.+|+|||||...-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 317
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.17 E-value=5.6 Score=38.10 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.5
Q ss_pred HHHHHHHHHHH----hCCcEEEEcCCCCcHHH
Q 004385 23 SYMLELKRALD----AKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 23 ~~~~~v~~~l~----~~~~~liEaPTGtGKTl 50 (757)
+++.++.+.+. .+..+.|-+|+|+|||-
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 34555555443 34578899999999985
No 318
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=39.16 E-value=9.7 Score=35.47 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..+++++|.|+|||-.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999973
No 319
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=38.88 E-value=12 Score=35.28 Aligned_cols=19 Identities=26% Similarity=0.438 Sum_probs=15.6
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..+..++|.+|.|+|||-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3467899999999999963
No 320
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=38.75 E-value=32 Score=35.84 Aligned_cols=35 Identities=26% Similarity=0.111 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~ 52 (757)
.-.|.++.+.+. +.+-+|- .++.=+.||+|||..+
T Consensus 72 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 72 TISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 567888776643 3334454 4566799999999985
No 321
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=38.32 E-value=54 Score=31.40 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.1
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.|..+++|+|.|+|||-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CceEEEEEcCCCCCHHHH
Confidence 356789999999999864
No 322
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=38.21 E-value=12 Score=35.46 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..+++++|.|+|||-.
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 356789999999999973
No 323
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=37.99 E-value=11 Score=35.87 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..++|++|.|+|||-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999963
No 324
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=37.90 E-value=12 Score=34.85 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+++++|.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468999999999863
No 325
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=37.78 E-value=11 Score=40.03 Aligned_cols=20 Identities=35% Similarity=0.522 Sum_probs=16.7
Q ss_pred HHhCCcEEEEcCCCCcHHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla 51 (757)
+..++.++|-+|||+|||-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 45567899999999999964
No 326
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=37.58 E-value=13 Score=35.64 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
+..+++++|.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4578999999999996
No 327
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=37.57 E-value=14 Score=34.45 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+.+++|.+|+|+|||..
T Consensus 10 ~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 10 GINILITGTPGTGKTSM 26 (184)
T ss_dssp SCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999964
No 328
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=37.53 E-value=12 Score=37.05 Aligned_cols=15 Identities=40% Similarity=0.330 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.++|-+|||+|||-.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 468899999999963
No 329
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=37.50 E-value=21 Score=37.82 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.7
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
.....+++.+++|||||+.
T Consensus 158 ~~~~~vli~Ge~GtGK~~l 176 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVV 176 (387)
T ss_dssp TCCSCEEEECSTTSSHHHH
T ss_pred CCCCCeEEecCCCcCHHHH
Confidence 3456889999999999974
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.48 E-value=12 Score=34.89 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..+++++|+|+|||-.
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688999999999963
No 331
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=37.44 E-value=24 Score=37.07 Aligned_cols=36 Identities=19% Similarity=0.026 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+.. .+-+|- .++.=+.||+|||..+.
T Consensus 62 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 62 NASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 5678887766543 333454 45668999999999863
No 332
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=37.11 E-value=30 Score=37.23 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEE-EEEccc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kv-i~~T~T 76 (757)
..+++-+|+|+|||-....-|..+.. .+. +| ++++.|
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~---~G~-kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKK---RGY-KVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHH---TTC-CEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEecCc
Confidence 36778899999999865544433332 234 55 445444
No 333
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=37.10 E-value=13 Score=43.64 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+.+++|.+|+|||||..
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46899999999999964
No 334
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=37.07 E-value=12 Score=36.48 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
|..+.|++|.|+|||-
T Consensus 20 g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CEEEEEECSTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4578999999999996
No 335
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=37.05 E-value=10 Score=37.14 Aligned_cols=19 Identities=26% Similarity=0.212 Sum_probs=13.0
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..|..+++|+|.|+|||-.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~ 41 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTH 41 (227)
T ss_dssp CCCCEEEEECCC---CHHH
T ss_pred cCCeEEEEECCCCCCHHHH
Confidence 4567899999999999863
No 336
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=37.01 E-value=13 Score=36.04 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.6
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.|..+++|+|.|+|||-.
T Consensus 4 ~g~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CCCEEEEEECSSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467899999999999963
No 337
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=36.83 E-value=14 Score=35.20 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=15.6
Q ss_pred HHhCCcEEEEcCCCCcHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTl 50 (757)
+..+..+++++|.|+|||-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3455688999999999986
No 338
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=36.76 E-value=22 Score=32.76 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~ 61 (757)
+..+|-+|+|+|||- |+-|+.++.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 477899999999996 445666654
No 339
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=36.73 E-value=22 Score=37.49 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHH---hCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKRALD---AKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~---~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.|...++ +|- .++.=+.||+|||..+.
T Consensus 94 ~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 94 GSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred cccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 5678888887765443 343 45668999999998764
No 340
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=36.64 E-value=21 Score=37.27 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHHHHh---CC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~---~~--~~liEaPTGtGKTla~L 53 (757)
--.|.+.-++|...++. |- .++.=+.||+|||..+.
T Consensus 64 ~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 64 SHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 55788887777654433 43 45668999999999874
No 341
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=36.62 E-value=23 Score=37.87 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHH---HhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKRAL---DAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l---~~~~--~~liEaPTGtGKTla~L 53 (757)
--.|.++.+.|...+ -+|. .++.=+.||+|||..++
T Consensus 119 ~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 456777766654433 3453 45667999999999874
No 342
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=36.46 E-value=70 Score=30.60 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
|..+++|+|.|+|||-.
T Consensus 3 g~~i~~eG~~gsGKsT~ 19 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTA 19 (213)
T ss_dssp CCEEEEEECTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 67889999999999964
No 343
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=36.11 E-value=27 Score=36.11 Aligned_cols=36 Identities=14% Similarity=-0.013 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
.-.|.++-+.+. +.+-+|- .++.=+.||+|||..+.
T Consensus 55 ~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 55 STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 557888776653 3334454 45668999999999864
No 344
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=36.04 E-value=12 Score=36.42 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..+++|+|.|+|||--
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 356889999999999863
No 345
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=35.87 E-value=19 Score=38.37 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHHH
Q 004385 36 GHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~ 52 (757)
..++|-+|||+|||-..
T Consensus 3 ~~i~i~GptgsGKttla 19 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEEECSSSSHHHHH
T ss_pred cEEEEECcchhhHHHHH
Confidence 35788999999999643
No 346
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=35.80 E-value=19 Score=37.92 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
..|.++.+.+.+ .+-+|. .++.=+.||+|||..+.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 568888776543 333454 45668999999998753
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=35.66 E-value=28 Score=32.85 Aligned_cols=28 Identities=18% Similarity=0.016 Sum_probs=20.0
Q ss_pred HHHHHHHHHHh-----CCcEEEEcCCCCcHHHH
Q 004385 24 YMLELKRALDA-----KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 24 ~~~~v~~~l~~-----~~~~liEaPTGtGKTla 51 (757)
.+.++.+.+.. +..+.|.+|+|+|||..
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHH
Confidence 45556665543 34688899999999964
No 348
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.62 E-value=20 Score=37.08 Aligned_cols=16 Identities=38% Similarity=0.324 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|-+|||+|||-.
T Consensus 6 ~~i~i~GptGsGKTtl 21 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999964
No 349
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=35.61 E-value=13 Score=33.97 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..++|.+|.|+|||..
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45789999999999963
No 350
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=35.55 E-value=15 Score=33.41 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
++++|.++.|+|||-.
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 6899999999999963
No 351
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=35.48 E-value=13 Score=34.32 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.8
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..++++++.|+|||-.
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356788999999999863
No 352
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=35.27 E-value=38 Score=34.49 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=22.7
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
+..+.+-+|+|+|||-..-+ |+.... +.++ +|.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~--Lagll~-~~~g-~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK--LGRYYQ-NLGK-KVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH--HHHHHH-TTTC-CEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHH--HHHHHH-hcCC-EEEEEee
Confidence 46788889999999974333 332222 2345 6666543
No 353
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=34.89 E-value=14 Score=35.11 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.++|.+|+|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368899999999963
No 354
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=34.89 E-value=16 Score=33.43 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.9
Q ss_pred HhCCcEEEEcCCCCcHHH
Q 004385 33 DAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTl 50 (757)
..|..+.+.+|.|+|||-
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 567789999999999996
No 355
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=34.84 E-value=35 Score=33.30 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=29.3
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
.+...++-+|-|+|||-++|=-+..+.. .+. +|++.++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~-kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQY-KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTC-CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-eEEEEeecC
Confidence 3667788899999999988876666543 245 788876554
No 356
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=34.69 E-value=15 Score=35.11 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.++|.+|+|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999963
No 357
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=34.37 E-value=14 Score=34.38 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..++++++.|+|||-.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45788999999999963
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=34.32 E-value=13 Score=35.66 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~ 54 (757)
.+..|+...|-+|+|+|||.-+.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHH
Confidence 344567899999999999975544
No 359
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=34.14 E-value=20 Score=37.81 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~ 62 (757)
+.-+|.+|||.|||. |+=|+.|+..
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 678999999999997 4567777543
No 360
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=34.12 E-value=16 Score=35.47 Aligned_cols=15 Identities=33% Similarity=0.452 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHH
Q 004385 36 GHCLLEMPTGTGKTI 50 (757)
Q Consensus 36 ~~~liEaPTGtGKTl 50 (757)
..+++++|+|+|||-
T Consensus 17 ~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGT 31 (233)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 578999999999996
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.11 E-value=16 Score=34.33 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+++++|+|+|||-.
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999973
No 362
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=34.08 E-value=15 Score=34.53 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+++++|.|+|||-.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999963
No 363
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=34.06 E-value=17 Score=33.09 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+++.+|+|+|||-.
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4688999999999963
No 364
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=33.95 E-value=44 Score=34.13 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
+.+++-+|+|+|||-..-.-|..+.. .++ +|.+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~-kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD---EGK-SVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh---cCC-EEEEEc
Confidence 46788999999999754443333332 244 565543
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=33.91 E-value=16 Score=33.97 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=12.8
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+++++|.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 366
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=33.89 E-value=60 Score=43.96 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHH
Q 004385 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL 55 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~ 55 (757)
-|.|..=+-.+++++....-+++-+|||+|||.++=+-
T Consensus 889 ~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L 926 (3245)
T 3vkg_A 889 KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVY 926 (3245)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHH
Confidence 45666666666677766666889999999999987543
No 367
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.71 E-value=17 Score=34.31 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|.+|.|+|||-.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4799999999999963
No 368
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=33.62 E-value=9.9 Score=36.16 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.4
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
.++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 47899999999995
No 369
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=33.42 E-value=34 Score=35.18 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=20.7
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 004385 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~ 73 (757)
.+++-+|+|+|||-....-|..++. .++ +|++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~---~g~-kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE---LGY-KVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH---TTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEE
Confidence 5777899999999755444433332 234 55554
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=33.31 E-value=15 Score=34.00 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+++++|+|+|||..
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999973
No 371
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=33.22 E-value=31 Score=35.55 Aligned_cols=31 Identities=10% Similarity=0.003 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhCC------cEEEEcCCCCcHHHH
Q 004385 21 QYSYMLELKRALDAKG------HCLLEMPTGTGKTIA 51 (757)
Q Consensus 21 Q~~~~~~v~~~l~~~~------~~liEaPTGtGKTla 51 (757)
..+-...+...+-++. .+.|-+|+|+|||-.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTT 108 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHH
Confidence 3444555555555554 678899999999964
No 372
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=33.04 E-value=16 Score=35.24 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.5
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999996
No 373
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=32.99 E-value=24 Score=36.47 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCcHHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L 53 (757)
+...+|.+|+|+|||.-.+
T Consensus 123 gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp SEEEEEECSCSSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4567899999999997544
No 374
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=32.86 E-value=18 Score=34.11 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.5
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..+..++|-+|+|+|||-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3467888999999999963
No 375
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=32.77 E-value=22 Score=37.38 Aligned_cols=36 Identities=19% Similarity=0.069 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 66 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred cCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 5578887776543 333454 45668999999998764
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=32.55 E-value=50 Score=30.42 Aligned_cols=39 Identities=10% Similarity=-0.021 Sum_probs=23.0
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
..+.+-+|+|+|||-.. ...+.+.... +. +|-+....+.
T Consensus 5 ~~i~i~G~sGsGKTTl~-~~L~~~l~~~--g~-~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM-EKWVAAAVRE--GW-RVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHH-HHHHHHHHHT--TC-CEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHH-HHHHHhhHhc--CC-eeeEEEeCCC
Confidence 45778899999999643 2223333322 33 6766666554
No 377
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=32.54 E-value=17 Score=35.74 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..+++|+|.|+|||-.
T Consensus 26 ~~~~i~~eG~~GsGKsT~ 43 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTA 43 (236)
T ss_dssp CCCEEEEEESTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 367899999999999963
No 378
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=32.43 E-value=15 Score=36.47 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
...+++++++|+|||-.
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 34688999999999963
No 379
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.30 E-value=16 Score=34.92 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.8
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+++++|+|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 380
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=32.23 E-value=26 Score=33.29 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=20.2
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcC
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~ 63 (757)
+..+|-+|+|+|||-. +-|+.|+...
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 5778999999999963 5567777653
No 381
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=32.20 E-value=19 Score=42.14 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITS 58 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~ 58 (757)
+.+++.+|+|||||+. +=+++
T Consensus 239 ~GILL~GPPGTGKT~L--AraiA 259 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI--ARAVA 259 (806)
T ss_dssp CEEEEECCTTSCHHHH--HHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHH
Confidence 4689999999999974 34443
No 382
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=32.02 E-value=18 Score=32.78 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=12.9
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.++++++.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999963
No 383
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=31.78 E-value=16 Score=36.30 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
+..+++|++.|+|||-
T Consensus 24 ~~~I~ieG~~GsGKST 39 (263)
T 1p5z_B 24 IKKISIEGNIAAGKST 39 (263)
T ss_dssp CEEEEEECSTTSSHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3578999999999996
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=31.67 E-value=34 Score=34.88 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
..+.+-+|+|+|||-..-. |+.... +.++ +|.+...
T Consensus 101 ~vi~lvG~nGsGKTTll~~--Lag~l~-~~~g-~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGK--LAHRLK-NEGT-KVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHHHH--HHHHHH-HTTC-CEEEECC
T ss_pred cEEEEEcCCCCCHHHHHHH--HHHHHH-HcCC-eEEEEee
Confidence 4678899999999974332 332222 2245 6777654
No 385
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=31.58 E-value=25 Score=36.83 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=23.1
Q ss_pred HHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 20 EQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 20 ~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
.|.++-+.+. +.+-+|- .++.=+.||+|||..+.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 5777766653 3333453 45668999999998864
No 386
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.42 E-value=19 Score=34.51 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+++++|.|+|||-.
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999963
No 387
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=31.23 E-value=19 Score=37.27 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=27.1
Q ss_pred eCCCCC---CCHHHHHHHHHHHH---HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 11 YFPYDN---IYPEQYSYMLELKR---ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 11 ~FPy~~---~r~~Q~~~~~~v~~---~l~~~~--~~liEaPTGtGKTla~L 53 (757)
.|.|.. +...|.+..+.|.. .+-+|. .++.=+.||+|||..+.
T Consensus 49 ~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 49 SFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp EEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred EEecCeEeCCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 455542 35568777665432 333454 45668999999998763
No 388
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=30.96 E-value=33 Score=36.57 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=18.0
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLI 56 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~a 56 (757)
.|....|-+|+|+|||.-.+.-+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 35689999999999998665433
No 389
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=30.78 E-value=14 Score=36.15 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTl 50 (757)
+.++++.+.|+-.. ++ ....|--.+..|+...|-+|+|+|||-
T Consensus 4 l~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 4 ITVRNATFTWARSD-PP----TLNGITFSIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EEEEEEEEESCTTS-CC----SEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCC-Cc----eeeeeEEEECCCCEEEEECCCCCCHHH
Confidence 67788888775311 11 122222244567899999999999996
No 390
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=30.78 E-value=31 Score=35.87 Aligned_cols=35 Identities=20% Similarity=0.054 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~ 52 (757)
.-.|.++-+.+. +.+-+|. .++.-++||+|||..+
T Consensus 61 ~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 61 DAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 567887776643 3334454 4566899999999885
No 391
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=30.62 E-value=15 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=17.0
Q ss_pred HHHhCCcEEEEcCCCCcHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTl 50 (757)
.+..|+...|-+|+|+|||-
T Consensus 27 ~i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp EECTTCEEEEECSTTSSHHH
T ss_pred EEcCCCEEEEECCCCCcHHH
Confidence 34568899999999999995
No 392
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=30.54 E-value=44 Score=35.08 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 22 ~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.++...+...-.....+++.+++||||++.
T Consensus 139 ~~~~~~~~~~a~~~~~vli~GesGtGKe~l 168 (368)
T 3dzd_A 139 LEIKRLIPKIAKSKAPVLITGESGTGKEIV 168 (368)
T ss_dssp HHHHHHHHHHHTSCSCEEEECCTTSSHHHH
T ss_pred HHHHhhhhhhhccchhheEEeCCCchHHHH
Confidence 333333444444456899999999999964
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=30.39 E-value=27 Score=36.32 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|-+|||+|||-.
T Consensus 8 ~lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 8 FLIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred ceEEEECCCcCcHHHH
Confidence 4688999999999964
No 394
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=30.16 E-value=22 Score=37.50 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+. +.+-+|- .++.=+.||+|||..+.
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 457888776643 3334454 45668999999998764
No 395
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=30.14 E-value=25 Score=37.15 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
-..|.++.+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 4568777766433 333453 45668999999998764
No 396
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=30.06 E-value=36 Score=35.61 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
+-.|.++.+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 456887766553 3344554 35667999999999863
No 397
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=29.93 E-value=42 Score=34.61 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCcHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~ 52 (757)
+..+.+-+|+|+|||-..
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 457889999999999743
No 398
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=29.60 E-value=15 Score=33.73 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=10.4
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..++++++.|+|||-.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999963
No 399
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=29.53 E-value=17 Score=34.42 Aligned_cols=18 Identities=22% Similarity=-0.016 Sum_probs=14.7
Q ss_pred hCCcEEEEcCCCCcHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla 51 (757)
.+..+.|-+|+|+|||-.
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 455788999999999963
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=29.53 E-value=27 Score=35.22 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
.+++-+|+|+|||-
T Consensus 35 livl~G~sGsGKST 48 (287)
T 1gvn_B 35 AFLLGGQPGSGKTS 48 (287)
T ss_dssp EEEEECCTTSCTHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999996
No 401
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=29.39 E-value=17 Score=33.80 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.4
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+++-+|+|+|||-.
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4678899999999963
No 402
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=29.21 E-value=51 Score=36.44 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=29.8
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~ 85 (757)
.+..|...+|-+|+|+|||.-...-+- ... +.+. +++|.+...+ ..|+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g--~~~-~~G~-~vi~~~~ee~-~~~l~~ 326 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVE--NAC-ANKE-RAILFAYEES-RAQLLR 326 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHH--HHH-TTTC-CEEEEESSSC-HHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH--HHH-hCCC-CEEEEEEeCC-HHHHHH
Confidence 345667899999999999975554332 222 2355 6666554333 234443
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=29.12 E-value=31 Score=44.52 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=28.0
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
.+.++++-+|+|||||.-.+.-+...+. .+. +++|.+..++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~-~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCC-cEEEEEcccc
Confidence 5678999999999999866554443332 245 6666665543
No 404
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=28.99 E-value=19 Score=34.36 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
++.+++|++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 4578999999999996
No 405
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=28.97 E-value=29 Score=36.20 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=18.4
Q ss_pred hCCcEEEEcCCCCcHHHHHHHHHH
Q 004385 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (757)
Q Consensus 34 ~~~~~liEaPTGtGKTla~L~~al 57 (757)
.|....|.+|+|+|||.-.+.-+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999986655443
No 406
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=28.71 E-value=26 Score=36.73 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 4568777765433 333454 45668999999998764
No 407
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=28.50 E-value=23 Score=34.62 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
...++|.+|.|+|||-
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3689999999999996
No 408
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=28.39 E-value=17 Score=35.07 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla 51 (757)
.+..|+...|-+|.|+|||--
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 345688999999999999964
No 409
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=28.24 E-value=47 Score=42.16 Aligned_cols=41 Identities=17% Similarity=0.145 Sum_probs=27.8
Q ss_pred HHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
+..+.+.+|.+|+|||||.-.+.-+...+.. +. +++|.|-.
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~-~vlYI~te 71 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAE 71 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECTT
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CC-ceEEEEec
Confidence 4456789999999999998766655555542 34 55555443
No 410
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=28.22 E-value=17 Score=35.48 Aligned_cols=44 Identities=20% Similarity=0.326 Sum_probs=26.9
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++...|+-.. ++ ....|--.+..|+...|-+|.|+|||--
T Consensus 7 l~~~~l~~~y~~~~-~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 7 VVMENVTAFWEEGG-TP----VLKDINFKIERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EEEEEEEECSSTTS-CC----SEEEEEEEEETTCEEEEECCTTSSHHHH
T ss_pred EEEEEEEEEeCCCC-ce----eeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 56677776664211 11 1122222345678999999999999963
No 411
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=28.19 E-value=23 Score=37.16 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 456888776553 3333454 45668999999999864
No 412
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=28.17 E-value=37 Score=36.64 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
+..|.++.+.+.. .+-+|- .++.=+.||+|||..+.
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 4578887776643 333453 45668999999998864
No 413
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=28.14 E-value=22 Score=37.19 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+. +.+-+|. .++.=++||+|||..+.
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 457888877653 3344454 45668999999998763
No 414
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=27.84 E-value=19 Score=35.13 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
+..+++|++.|+|||-
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 3468899999999996
No 415
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=27.79 E-value=17 Score=35.88 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=27.4
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.++++.+.||-.. . .....|-=.+..|+...|-+|.|+|||--
T Consensus 8 ~~~~~l~~~y~~~~-~----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 8 ITFRNIRFRYKPDS-P----VILDNINLSIKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EEEEEEEEESSTTS-C----EEEEEEEEEEETTCEEEEECSTTSSHHHH
T ss_pred eeEEEEEEEeCCCC-c----ceeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 56677777764111 1 11222222445688999999999999974
No 416
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=27.65 E-value=32 Score=36.14 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=18.7
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~ 62 (757)
+..+|.+|||+|||- |+-|+.|+..
T Consensus 24 g~~~i~G~NGaGKTT--ll~ai~~al~ 48 (365)
T 3qf7_A 24 GITVVEGPNGAGKSS--LFEAISFALF 48 (365)
T ss_dssp EEEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHhc
Confidence 367799999999995 3456777654
No 417
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=27.63 E-value=24 Score=36.92 Aligned_cols=35 Identities=20% Similarity=0.095 Sum_probs=24.0
Q ss_pred CHHHHHHHHHH----HHHHHhCC--cEEEEcCCCCcHHHHH
Q 004385 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIAL 52 (757)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~liEaPTGtGKTla~ 52 (757)
...|.++-+.+ .+.+-+|- .++.=+.||+|||..+
T Consensus 67 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 67 TSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 55788776654 33344454 4566899999999876
No 418
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=27.60 E-value=28 Score=36.91 Aligned_cols=36 Identities=31% Similarity=0.245 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~----~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+. +.+-+|. .++.=+.||+|||..++
T Consensus 76 ~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 76 RSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 567888777543 3344454 45668999999998764
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=27.60 E-value=43 Score=35.04 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=22.3
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcc
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~ 75 (757)
+..+.+-+|+|+|||-..-. |+.... +.++ +|.+...
T Consensus 157 g~vi~lvG~nGsGKTTll~~--Lag~l~-~~~G-~V~l~g~ 193 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGK--LAHRLK-NEGT-KVLMAAG 193 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHH--HHHHHH-HTTC-CEEEECC
T ss_pred CeEEEEEcCCCChHHHHHHH--HHhhcc-ccCC-EEEEecc
Confidence 34688899999999974332 222222 2245 6766653
No 420
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.58 E-value=16 Score=35.43 Aligned_cols=41 Identities=10% Similarity=0.158 Sum_probs=26.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTl 50 (757)
+.++++.+.|+-. .....|-=.+..|+...|-+|.|+|||-
T Consensus 5 l~~~~l~~~y~~~-------~~l~~vsl~i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 5 LRAENIKKVIRGY-------EILKGISLSVKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EEEEEEEEEETTE-------EEEEEEEEEEETTCEEEEEECTTSCHHH
T ss_pred EEEEeEEEEECCE-------eeEeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 5666776665321 1122222244568899999999999995
No 421
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=27.28 E-value=24 Score=37.73 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=24.6
Q ss_pred CHHHHHHHHHH----HHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+ .+.+-+|. .++.=+.||+|||..+.
T Consensus 132 ~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred CCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 55788776654 33444454 45667999999998864
No 422
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=27.12 E-value=18 Score=35.99 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=28.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|+-...+ .....|--.+..|+...|-+|+|+|||--
T Consensus 18 l~i~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 18 IEFSDVNFSYPKQTNH----RTLKSINFFIPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp EEEEEEEECCTTCCSS----CSEEEEEEEECTTCEEEEECSTTSSHHHH
T ss_pred EEEEEEEEEeCCCCcC----ceeEeeEEEECCCCEEEEECCCCCCHHHH
Confidence 5677777766532100 01222222445688999999999999974
No 423
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=27.00 E-value=38 Score=34.23 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=12.6
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+.|.+|+|+|||-.
T Consensus 33 ii~I~G~sGsGKSTl 47 (290)
T 1odf_A 33 FIFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567899999999863
No 424
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.60 E-value=25 Score=32.69 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
++.|-+|.|+|||--
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999974
No 425
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=26.53 E-value=39 Score=35.38 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH----HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~----~l~~~~--~~liEaPTGtGKTla~L 53 (757)
..|.+..+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 457777666543 334454 35567999999998754
No 426
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=26.49 E-value=29 Score=32.67 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
|..+.+-+|+|+|||-.
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 45678999999999964
No 427
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=26.19 E-value=45 Score=35.69 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhCC--------------------cEEEEcCCCCcHHH
Q 004385 23 SYMLELKRALDAKG--------------------HCLLEMPTGTGKTI 50 (757)
Q Consensus 23 ~~~~~v~~~l~~~~--------------------~~liEaPTGtGKTl 50 (757)
.....|--.+..|+ .+.|-+|+|+|||-
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKST 84 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 84 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHH
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHH
Confidence 45566666677776 89999999999996
No 428
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=26.09 E-value=17 Score=35.84 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=26.9
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|| .. .+ ....|--.+..|+...|-+|+|+|||--
T Consensus 2 l~~~~l~~~y~-~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 2 LSARHVDFAYD-DS-EQ----ILRDISFEAQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp EEEEEEEECSS-SS-SC----SEEEEEEEECTTEEEEEECCTTSSHHHH
T ss_pred EEEEEEEEEeC-CC-Cc----eEEEeEEEEcCCCEEEEECCCCCCHHHH
Confidence 55677776664 11 11 1222222445678899999999999964
No 429
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=26.02 E-value=55 Score=30.50 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccch
Q 004385 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (757)
Q Consensus 38 ~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~ 77 (757)
.+|-+|+|+|||--.. .++.. ..+ .++++|...
T Consensus 2 ilV~Gg~~SGKS~~A~----~la~~--~~~-~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE----ALIGD--APQ-VLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHH----HHHCS--CSS-EEEEECCCC
T ss_pred EEEECCCCCcHHHHHH----HHHhc--CCC-eEEEecCCC
Confidence 5788999999996432 22322 234 677777653
No 430
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=26.01 E-value=23 Score=34.36 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCcHHHH
Q 004385 35 KGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla 51 (757)
+..+++|++.|+|||-.
T Consensus 21 ~~~i~~~G~~g~GKst~ 37 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQ 37 (223)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999964
No 431
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.96 E-value=19 Score=35.70 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=26.8
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.++++.+.|+-. .....|--.+..|+...|-+|.|+|||--
T Consensus 8 l~i~~l~~~y~~~-------~vl~~vsl~i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 8 LRTENIVKYFGEF-------KALDGVSISVNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EEEEEEEEEETTE-------EEEEEECCEEETTCEEEEECSTTSSHHHH
T ss_pred EEEeeeEEEECCE-------eeEeeeEEEEeCCCEEEEECCCCCCHHHH
Confidence 5667777666411 11222223455688999999999999963
No 432
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.46 E-value=20 Score=35.17 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=26.3
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.++++.+.|+-. + ....|-=.+..|+...|-+|.|+|||--
T Consensus 7 l~~~~l~~~y~~~---~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 7 LEVQSLHVYYGAI---H----AIKGIDLKVPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EEEEEEEEEETTE---E----EEEEEEEEEETTCEEEEECSTTSSHHHH
T ss_pred EEEEeEEEEECCe---e----EEeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 5566666665421 1 1222222345678999999999999963
No 433
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=25.43 E-value=20 Score=35.47 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=16.9
Q ss_pred HHhCCcEEEEcCCCCcHHHH
Q 004385 32 LDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 32 l~~~~~~liEaPTGtGKTla 51 (757)
+..|+...|-+|.|+|||--
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45678999999999999963
No 434
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=25.41 E-value=64 Score=34.70 Aligned_cols=25 Identities=24% Similarity=0.115 Sum_probs=17.2
Q ss_pred cEEEEcCCCCcHHHHHHHHHHHHHH
Q 004385 37 HCLLEMPTGTGKTIALLSLITSYVL 61 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~~al~~~~ 61 (757)
.+++-+++|+|||-...--|..++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5666799999999865554444443
No 435
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=25.39 E-value=20 Score=35.41 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=26.9
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|+-. + ....|-=.+..|+...|-+|.|+|||--
T Consensus 4 l~~~~l~~~y~~~---~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 4 LEIRDLWASIDGE---T----ILKGVNLVVPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EEEEEEEEEETTE---E----EEEEEEEEEETTCEEEEECSTTSSHHHH
T ss_pred EEEEeEEEEECCE---E----EEeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 5667777666411 1 1222222345688999999999999974
No 436
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=25.30 E-value=61 Score=32.77 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=20.9
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
+.+.+-+|+|+|||-....-+..++.. +. +|.+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~---~~-~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK---GR-RPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CC-eEEEec
Confidence 456667999999997544444333322 34 555543
No 437
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.29 E-value=21 Score=35.55 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=17.4
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla 51 (757)
.+..|+...|-+|.|+|||--
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHH
T ss_pred EEcCCcEEEEECCCCCCHHHH
Confidence 345678999999999999964
No 438
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=25.14 E-value=31 Score=40.30 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.8
Q ss_pred CcEEEEcCCCCcHHHHHHHHHHHH
Q 004385 36 GHCLLEMPTGTGKTIALLSLITSY 59 (757)
Q Consensus 36 ~~~liEaPTGtGKTla~L~~al~~ 59 (757)
+.+++.+|+|||||+ |+-+++.
T Consensus 512 ~gvLl~GPPGtGKT~--lAkaiA~ 533 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTL--LAKAIAN 533 (806)
T ss_dssp SCCEEESSTTSSHHH--HHHHHHH
T ss_pred ceEEEecCCCCCchH--HHHHHHH
Confidence 468999999999996 4555543
No 439
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=25.11 E-value=28 Score=36.89 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=24.7
Q ss_pred CHHHHHHHHHH----HHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v----~~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.++.+.+ .+.+-+|. .++.=+.||+|||..+.
T Consensus 112 ~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp TCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred CCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 55788777654 33444454 45668999999998864
No 440
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=24.93 E-value=23 Score=33.40 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
+..+.|.+|+|+|||.
T Consensus 21 ~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT 36 (207)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4567899999999996
No 441
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.79 E-value=21 Score=35.66 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=17.6
Q ss_pred HHHhCCcEEEEcCCCCcHHHH
Q 004385 31 ALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla 51 (757)
.+..|+...|-+|.|+|||--
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 345688999999999999964
No 442
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=24.72 E-value=30 Score=31.52 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=12.7
Q ss_pred cEEEEcCCCCcHHH
Q 004385 37 HCLLEMPTGTGKTI 50 (757)
Q Consensus 37 ~~liEaPTGtGKTl 50 (757)
+++|.+|.|+|||-
T Consensus 6 ~i~i~G~~GsGKsT 19 (175)
T 1via_A 6 NIVFIGFMGSGKST 19 (175)
T ss_dssp CEEEECCTTSCHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 68899999999986
No 443
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=24.69 E-value=21 Score=35.38 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=27.4
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|+- . ++ ....|--.+..|+...|-+|.|+|||--
T Consensus 5 l~i~~l~~~y~~-~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 5 LSVENLGFYYQA-E-NF----LFQQLNFDLNKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp EEEEEEEEEETT-T-TE----EEEEEEEEEETTCEEEEECCSSSSHHHH
T ss_pred EEEeeEEEEeCC-C-Ce----EEEEEEEEECCCCEEEEECCCCCCHHHH
Confidence 667777777641 1 11 1222222345678999999999999963
No 444
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.59 E-value=22 Score=35.56 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=29.5
Q ss_pred CEEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 1 m~~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
|-+.++++.+.|+..... +......|--.+..|+...|-+|.|+|||--
T Consensus 1 ~~l~~~~l~~~y~~~~~~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTPL--EKKALENVSLVINEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CCEEEEEEEEEESTTSTT--CEEEEEEEEEEECTTCEEEEECSTTSSHHHH
T ss_pred CEEEEEEEEEEecCCCcc--ccceeeeeEEEEcCCCEEEEECCCCCcHHHH
Confidence 456788888777521100 0011222222445678999999999999963
No 445
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.58 E-value=22 Score=35.69 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=26.9
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTl 50 (757)
+.+.++.+.|+-...+ .....|-=.+..|+...|-+|.|+|||-
T Consensus 17 l~~~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNV----QVLQGLTFTLYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp EEEEEEEECCTTCTTS----CCEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCCCc----eeeEeeEEEECCCCEEEEECCCCCCHHH
Confidence 5667777666431000 1122222245567899999999999996
No 446
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=24.56 E-value=30 Score=32.98 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCCcHHH
Q 004385 35 KGHCLLEMPTGTGKTI 50 (757)
Q Consensus 35 ~~~~liEaPTGtGKTl 50 (757)
+..+.|-+|+|+|||-
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3578899999999986
No 447
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=24.55 E-value=27 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..+.|++|.|+|||..
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999963
No 448
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=24.27 E-value=21 Score=35.89 Aligned_cols=43 Identities=12% Similarity=0.182 Sum_probs=29.2
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|+-.. + ....|-=.+..|+...|-+|.|+|||--
T Consensus 8 l~i~~ls~~y~~~~--~----~L~~isl~i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 8 LKVEELNYNYSDGT--H----ALKGINMNIKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EEEEEEEEECTTSC--E----EEEEEEEEEETTSEEEEECCTTSSHHHH
T ss_pred EEEEEEEEEECCCC--e----EEEeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 67788888776432 1 2222223456688999999999999963
No 449
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.17 E-value=30 Score=36.98 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHH---HHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLELKR---ALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v~~---~l~~~~--~~liEaPTGtGKTla~L 53 (757)
--.|.++.+.|.. .+-+|. .++.-+.||+|||..+.
T Consensus 117 ~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 117 LSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 4567766655432 333453 45667999999998863
No 450
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=24.13 E-value=33 Score=31.51 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCcHHHH
Q 004385 36 GHCLLEMPTGTGKTIA 51 (757)
Q Consensus 36 ~~~liEaPTGtGKTla 51 (757)
..++|.+|+|+|||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4688999999999964
No 451
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=24.05 E-value=25 Score=36.95 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=24.1
Q ss_pred CHHHHHHHHHH---HHHHHhCC--cEEEEcCCCCcHHHHHH
Q 004385 18 YPEQYSYMLEL---KRALDAKG--HCLLEMPTGTGKTIALL 53 (757)
Q Consensus 18 r~~Q~~~~~~v---~~~l~~~~--~~liEaPTGtGKTla~L 53 (757)
...|.+..+.+ .+.+-+|. .++.=+.||+|||..+.
T Consensus 58 ~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 58 NATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred CCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 55788776654 33333454 45567999999998863
No 452
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=24.02 E-value=22 Score=35.37 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=26.7
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|+-. .....|--.+..|+...|-+|.|+|||--
T Consensus 7 l~i~~l~~~y~~~-------~vl~~vsl~i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 7 LHVIDLHKRYGGH-------EVLKGVSLQARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp EEEEEEEEEETTE-------EEEEEEEEEECTTCEEEEECCTTSSHHHH
T ss_pred EEEeeEEEEECCE-------EEEEeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 5667777666311 11222222445678999999999999963
No 453
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=23.97 E-value=28 Score=34.02 Aligned_cols=30 Identities=13% Similarity=-0.215 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 22 ~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
......|--.+..+..+.|-+|.|+|||-.
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHH
Confidence 344555555666777888999999999964
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=23.95 E-value=19 Score=40.51 Aligned_cols=62 Identities=11% Similarity=0.113 Sum_probs=36.0
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~ 73 (757)
+.++++...||-.. ....+.|--.+..|+...|-+|+|+|||--.- ++.-. ..+..+ +|.+-
T Consensus 342 i~~~~v~~~y~~~~-----~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~--~l~g~-~~p~~G-~i~~~ 403 (582)
T 3b5x_A 342 VDVKDVTFTYQGKE-----KPALSHVSFSIPQGKTVALVGRSGSGKSTIAN--LFTRF-YDVDSG-SICLD 403 (582)
T ss_pred EEEEEEEEEcCCCC-----ccccccceEEECCCCEEEEECCCCCCHHHHHH--HHhcC-CCCCCC-EEEEC
Confidence 45566665554211 12344555566788999999999999996322 22211 223445 67664
No 455
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=23.66 E-value=65 Score=41.63 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=29.6
Q ss_pred HhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchh
Q 004385 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~ 78 (757)
..+.++++.+|+|||||.-.+.-+...++ .+. +++|.|-.++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge-~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1120 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEEcccc
Confidence 35578999999999999866654444332 256 7888876654
No 456
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=23.53 E-value=53 Score=32.60 Aligned_cols=49 Identities=8% Similarity=-0.037 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCcHH-HHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHHh
Q 004385 35 KGHCLLEMPTGTGKT-IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (757)
Q Consensus 35 ~~~~liEaPTGtGKT-la~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~~ 89 (757)
+...+|.+++|+||| +++-.. .+-+ . .+. +++|.|-..+. +++++..+.
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl-~~g~-~--~Ge-~~~~~~~~e~~-~~l~~~~~~ 70 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYIL-SRKL-K--SDN-LVGMFSISYPL-QLIIRILSR 70 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHH-HHHH-H--TTC-EEEEEECSSCH-HHHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHHH-HHHH-H--CCC-cEEEEEEeCCH-HHHHHHHHH
Confidence 346777755555555 443332 2222 2 256 77777655443 455554443
No 457
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=23.44 E-value=56 Score=30.79 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHhC--CcEEEEcCCCCcHHH
Q 004385 18 YPEQYSYMLELKRALDAK--GHCLLEMPTGTGKTI 50 (757)
Q Consensus 18 r~~Q~~~~~~v~~~l~~~--~~~liEaPTGtGKTl 50 (757)
-+...+.+..+...+..+ ..+++-+++|+|||-
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTT 45 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTL 45 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHH
Confidence 455666777776666544 367788999999995
No 458
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=23.33 E-value=42 Score=37.50 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHh----CCcEEEEcCCCCcHHHHH
Q 004385 23 SYMLELKRALDA----KGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 23 ~~~~~v~~~l~~----~~~~liEaPTGtGKTla~ 52 (757)
..+..+.+.+.. ...++|.+|.|+|||-.+
T Consensus 131 ~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 131 KLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp HHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHH
Confidence 344456666652 357889999999999743
No 459
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.09 E-value=23 Score=35.32 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 31 ~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
.+..|+...|-+|.|+|||-- +-+++-. ..+... .|.+.-
T Consensus 33 ~i~~Ge~~~liG~nGsGKSTL--l~~l~Gl-~~p~~G-~I~~~g 72 (266)
T 4g1u_C 33 HIASGEMVAIIGPNGAGKSTL--LRLLTGY-LSPSHG-ECHLLG 72 (266)
T ss_dssp EEETTCEEEEECCTTSCHHHH--HHHHTSS-SCCSSC-EEEETT
T ss_pred EEcCCCEEEEECCCCCcHHHH--HHHHhcC-CCCCCc-EEEECC
Confidence 345688999999999999963 2233211 123345 677653
No 460
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=22.89 E-value=50 Score=35.50 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=14.5
Q ss_pred cEEEEcCCCCcHHHHHHH
Q 004385 37 HCLLEMPTGTGKTIALLS 54 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~ 54 (757)
++++-+|+|+|||-....
T Consensus 101 vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CEEEECCSSSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 688899999999975443
No 461
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.82 E-value=24 Score=35.15 Aligned_cols=42 Identities=12% Similarity=0.222 Sum_probs=26.1
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.|+- + .....|-=.+..|+...|-+|.|+|||--
T Consensus 25 l~i~~l~~~y~~---~----~vL~~vsl~i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 25 IDVHQLKKSFGS---L----EVLKGINVHIREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp EEEEEEEEEETT---E----EEEEEEEEEECTTCEEEEECCTTSSHHHH
T ss_pred EEEEeEEEEECC---E----EEEEeeEEEEcCCCEEEEEcCCCCcHHHH
Confidence 566666666531 1 11222222345678999999999999964
No 462
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=22.73 E-value=33 Score=37.39 Aligned_cols=31 Identities=16% Similarity=-0.181 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhCC-------cEEEEcCCCCcHHHH
Q 004385 20 EQYSYMLELKRALDAKG-------HCLLEMPTGTGKTIA 51 (757)
Q Consensus 20 ~Q~~~~~~v~~~l~~~~-------~~liEaPTGtGKTla 51 (757)
+|...-..+.-++..|. |+++++++|| ||+.
T Consensus 217 G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~L 254 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEI 254 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHH
T ss_pred CCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHH
Confidence 44444444455555555 9999999999 9984
No 463
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.70 E-value=24 Score=35.54 Aligned_cols=43 Identities=14% Similarity=0.209 Sum_probs=27.3
Q ss_pred EEEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 2 ~~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
.+.+.++.+.|+-. .....|-=.+..|+...|-+|.|+|||--
T Consensus 21 ~l~~~~l~~~y~~~-------~vL~~isl~i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 21 LIQLDQIGRMKQGK-------TILKKISWQIAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EEEEEEEEEEETTE-------EEEEEEEEEEETTCEEEEECCTTSSHHHH
T ss_pred eEEEEeEEEEECCE-------EEEEeeeEEEcCCCEEEEECCCCCcHHHH
Confidence 35667777666421 11222222445688999999999999963
No 464
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=22.65 E-value=57 Score=33.14 Aligned_cols=19 Identities=11% Similarity=0.010 Sum_probs=15.0
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..+..+.|-+|+|+|||-.
T Consensus 78 ~~g~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTT 96 (308)
T ss_dssp CCCEEEEEEECTTSSHHHH
T ss_pred CCCEEEEEECCCCCCHHHH
Confidence 3445788899999999964
No 465
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=22.42 E-value=21 Score=36.53 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=27.1
Q ss_pred EEEcCeeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCCcHHHH
Q 004385 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 3 ~~i~~~~v~FPy~~~r~~Q~~~~~~v~~~l~~~~~~liEaPTGtGKTla 51 (757)
+.+.++.+.||-.. + ....|--.+..|+.+.|-+|+|+|||--
T Consensus 54 i~~~~vs~~y~~~~--~----vL~~isl~i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 54 IEFENVHFSYADGR--E----TLQDVSFTVMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp EEEEEEEEESSTTC--E----EEEEEEEEECTTCEEEEESSSCHHHHHH
T ss_pred EEEEEEEEEcCCCC--c----eeeeeeEEEcCCCEEEEECCCCchHHHH
Confidence 45667776665221 1 1222222445688999999999999964
No 466
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=22.37 E-value=52 Score=41.77 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=24.9
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T 74 (757)
+...+|-+|+|+|||.-.+.-+...+.. +. +|+|.+
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~-~VlyiS 767 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFID 767 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEC
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc---CC-CeEEEe
Confidence 4578999999999998776655554432 34 566544
No 467
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=22.36 E-value=75 Score=35.55 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEE-EEccc
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI-YCTRT 76 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi-~~T~T 76 (757)
.+.+++.+..|+|||.....-|...++. ++ ||+ |.+-.
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~-rVLlvd~D~ 46 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ---GK-RVLLVSTDP 46 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEECCT
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC---CC-cEEEEECCC
Confidence 3578889999999998776666666643 44 554 44443
No 468
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=22.02 E-value=66 Score=34.11 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=27.5
Q ss_pred eCCCCCCCHH--HHHHHHHHHHHH---HhCCcEEEEcCCCCcHHHHH
Q 004385 11 YFPYDNIYPE--QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIAL 52 (757)
Q Consensus 11 ~FPy~~~r~~--Q~~~~~~v~~~l---~~~~~~liEaPTGtGKTla~ 52 (757)
.+|.+..++. ..+.--.+.++| -.|+.++|-||.|+|||.-+
T Consensus 146 i~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 146 DYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp ECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred CCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 4666544443 223333555555 45789999999999999754
No 469
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=21.83 E-value=1.4e+02 Score=30.71 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHh--C--CcEEEEcCCCCcHHHHHH
Q 004385 19 PEQYSYMLELKRALDA--K--GHCLLEMPTGTGKTIALL 53 (757)
Q Consensus 19 ~~Q~~~~~~v~~~l~~--~--~~~liEaPTGtGKTla~L 53 (757)
+...+.+..+.+.+.. + ..+++-+++|+|||-..-
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 59 PDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIE 97 (355)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHH
T ss_pred hhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHH
Confidence 4444556666666642 2 267889999999997543
No 470
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=21.80 E-value=25 Score=35.70 Aligned_cols=19 Identities=26% Similarity=0.232 Sum_probs=15.8
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..|+...|-+|.|+|||--
T Consensus 62 ~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp CTTCEEEEEESTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3467889999999999974
No 471
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=21.46 E-value=1.3e+02 Score=29.99 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHh-CCcEEE-E--cCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 004385 23 SYMLELKRALDA-KGHCLL-E--MPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (757)
Q Consensus 23 ~~~~~v~~~l~~-~~~~li-E--aPTGtGKTla~L~~al~~~~~~~~~~~kvi~~ 73 (757)
+.+..+.+.+.. ++.+.+ - +--|+|||.....-|...+.. +. ||++.
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~---G~-rVlli 71 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL---NL-KVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhC---CC-eEEEE
Confidence 334444444443 344444 4 478999998666555444432 45 66653
No 472
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.27 E-value=1.8e+02 Score=29.23 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=22.4
Q ss_pred CcEEEEcC-CCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 004385 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (757)
Q Consensus 36 ~~~liEaP-TGtGKTla~L~~al~~~~~~~~~~~kvi~~ 73 (757)
+.+++-++ .|+|||.....-|.+++.. ++ ||++.
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~---G~-rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQS---DQ-KVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhC---CC-cEEEE
Confidence 45666665 6999998766666666542 45 66655
No 473
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=21.26 E-value=33 Score=32.12 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.8
Q ss_pred cEEEEcCCCCcHHHH
Q 004385 37 HCLLEMPTGTGKTIA 51 (757)
Q Consensus 37 ~~liEaPTGtGKTla 51 (757)
.+.|.+|.|+|||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 478899999999963
No 474
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=21.25 E-value=41 Score=37.18 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHHHHHH-HHHhCCcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccc
Q 004385 24 YMLELKR-ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (757)
Q Consensus 24 ~~~~v~~-~l~~~~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T 76 (757)
....|.- .+..|...+|.+|+|+|||.-..+-+++-+.. +..+ .|+|....
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-~~~g-~i~v~g~~ 78 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-FDEP-GVFVTFEE 78 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-HCCC-EEEEESSS
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCC-EEEEEEeC
Confidence 3555555 56678899999999999998655422222222 1234 56666443
No 475
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=21.16 E-value=39 Score=33.18 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.6
Q ss_pred HhCCcEEEEcCCCCcHHHH
Q 004385 33 DAKGHCLLEMPTGTGKTIA 51 (757)
Q Consensus 33 ~~~~~~liEaPTGtGKTla 51 (757)
..+..+.|-+|+|+|||-.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TTSCEEEEECCTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 3457889999999999963
No 476
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=21.02 E-value=29 Score=40.77 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHH
Q 004385 35 KGHCLLEMPTGTGKTIALLSLITSYV 60 (757)
Q Consensus 35 ~~~~liEaPTGtGKTla~L~~al~~~ 60 (757)
++++++.+|+|||||.. +-+++..
T Consensus 511 ~~~vLL~GppGtGKT~L--akala~~ 534 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLL--AKAIANE 534 (806)
T ss_dssp CCCCCCBCCTTSSHHHH--HHHHHHH
T ss_pred CceeEEECCCCCCHHHH--HHHHHHH
Confidence 46799999999999984 4444443
No 477
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=20.71 E-value=2e+02 Score=28.29 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=22.3
Q ss_pred CcEEEEcC-CCCcHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 004385 36 GHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (757)
Q Consensus 36 ~~~liEaP-TGtGKTla~L~~al~~~~~~~~~~~kvi~~ 73 (757)
+.+++-++ .|+|||.....-|.+++.. ++ ||++.
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~---G~-rVLLI 117 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQA---GY-KTLIV 117 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhC---CC-eEEEE
Confidence 45666655 6999998766666666642 45 66654
No 478
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=20.52 E-value=2.7e+02 Score=26.31 Aligned_cols=68 Identities=7% Similarity=-0.001 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CcEEEEcCCCCcHHHHHHHHHHHHHHcCCCCCcEEEEEccchhhHHHHHHHHH
Q 004385 14 YDNIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (757)
Q Consensus 14 y~~~r~~Q~~~~~~v~~~l~~~-~~~liEaPTGtGKTla~L~~al~~~~~~~~~~~kvi~~T~T~~l~~Q~~~el~ 88 (757)
...+.|.+.+++..+......+ +.-++|.+||+|-+..+|+.+ .+.+. +|+-.=.....++..-+.++
T Consensus 34 ~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~------~~~~~-~v~~vD~~~~~~~~a~~~~~ 102 (221)
T 3dr5_A 34 LPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNG------LADNT-TLTCIDPESEHQRQAKALFR 102 (221)
T ss_dssp CCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHH------SCTTS-EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHh------CCCCC-EEEEEECCHHHHHHHHHHHH
Confidence 3346899999988887655432 336779999999776655432 23234 56554444444444333333
No 479
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=20.18 E-value=79 Score=30.52 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=17.9
Q ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHcCCCCCcEEEE
Q 004385 38 CLLE-MPTGTGKTIALLSLITSYVLSKPENPVKLIY 72 (757)
Q Consensus 38 ~liE-aPTGtGKTla~L~~al~~~~~~~~~~~kvi~ 72 (757)
++|- ..||+|||...+.-+-++++ .+. +|.|
T Consensus 7 i~Itgt~t~vGKT~vt~~L~~~l~~---~G~-~V~~ 38 (228)
T 3of5_A 7 FFIIGTDTEVGKTYISTKLIEVCEH---QNI-KSLC 38 (228)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHH---TTC-CEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH---CCC-eeEE
Confidence 4444 45899999875543333332 134 6766
No 480
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=20.05 E-value=1e+02 Score=33.04 Aligned_cols=21 Identities=29% Similarity=0.246 Sum_probs=15.3
Q ss_pred cEEEEcCCCCcHHHHHHHHHH
Q 004385 37 HCLLEMPTGTGKTIALLSLIT 57 (757)
Q Consensus 37 ~~liEaPTGtGKTla~L~~al 57 (757)
.+++-+|+|+|||.....-+.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 566779999999976554433
Done!