Query 004387
Match_columns 757
No_of_seqs 338 out of 2027
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 22:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02791 Nudix hydrolase homol 100.0 1E-168 3E-173 1457.1 69.7 747 6-756 1-769 (770)
2 PF03571 Peptidase_M49: Peptid 100.0 2E-104 3E-109 890.5 29.7 399 322-730 20-500 (549)
3 KOG3675 Dipeptidyl peptidase I 100.0 1.4E-60 3.1E-65 494.0 9.6 302 400-737 10-361 (417)
4 cd02885 IPP_Isomerase Isopente 99.9 4.7E-25 1E-29 217.5 16.3 158 8-174 1-159 (165)
5 PLN02552 isopentenyl-diphospha 99.9 9.4E-25 2E-29 226.8 19.0 167 3-174 17-215 (247)
6 cd03676 Nudix_hydrolase_3 Memb 99.9 9E-25 1.9E-29 218.5 18.1 173 5-189 1-178 (180)
7 PRK03759 isopentenyl-diphospha 99.9 2.2E-24 4.7E-29 216.6 16.9 161 6-175 3-164 (184)
8 TIGR02150 IPP_isom_1 isopenten 99.9 5E-24 1.1E-28 208.9 16.5 153 11-175 1-154 (158)
9 COG1443 Idi Isopentenyldiphosp 99.9 5.5E-23 1.2E-27 196.9 11.2 162 6-175 1-165 (185)
10 PRK15393 NUDIX hydrolase YfcD; 99.9 3.7E-21 8E-26 192.6 17.7 148 2-164 3-150 (180)
11 cd04692 Nudix_Hydrolase_33 Mem 99.8 1.3E-20 2.7E-25 181.6 15.3 137 36-175 1-139 (144)
12 PLN02839 nudix hydrolase 99.8 2.5E-18 5.4E-23 184.9 17.7 192 5-208 171-368 (372)
13 KOG0142 Isopentenyl pyrophosph 99.8 9.3E-19 2E-23 170.7 8.4 160 7-174 18-194 (225)
14 cd04693 Nudix_Hydrolase_34 Mem 99.7 1.5E-17 3.1E-22 156.6 13.8 122 38-174 1-122 (127)
15 cd04697 Nudix_Hydrolase_38 Mem 99.7 3E-17 6.6E-22 154.5 14.3 120 38-173 1-120 (126)
16 cd04682 Nudix_Hydrolase_23 Mem 99.7 3.6E-16 7.8E-21 146.1 12.7 113 37-163 1-114 (122)
17 PRK15434 GDP-mannose mannosyl 99.7 1.4E-15 3.1E-20 149.1 14.9 119 37-163 17-137 (159)
18 cd03430 GDPMH GDP-mannose glyc 99.7 1.9E-15 4.2E-20 145.9 14.8 118 38-163 13-132 (144)
19 PRK15472 nucleoside triphospha 99.6 1.2E-15 2.5E-20 146.4 13.0 121 36-163 2-125 (141)
20 cd04679 Nudix_Hydrolase_20 Mem 99.6 3.9E-15 8.5E-20 139.5 14.0 115 37-164 2-116 (125)
21 cd04683 Nudix_Hydrolase_24 Mem 99.6 4E-15 8.7E-20 138.2 13.9 114 39-164 2-115 (120)
22 PF00293 NUDIX: NUDIX domain; 99.6 4.6E-15 1E-19 139.2 12.4 122 36-166 1-122 (134)
23 cd04684 Nudix_Hydrolase_25 Con 99.6 1.1E-14 2.4E-19 136.2 14.5 116 39-163 2-117 (128)
24 cd04673 Nudix_Hydrolase_15 Mem 99.6 1E-14 2.2E-19 135.4 14.0 113 39-163 2-114 (122)
25 cd03426 CoAse Coenzyme A pyrop 99.6 6.6E-15 1.4E-19 144.2 13.0 115 37-163 2-118 (157)
26 cd04700 DR1025_like DR1025 fro 99.6 1.7E-14 3.7E-19 138.9 15.4 124 30-167 6-129 (142)
27 cd04694 Nudix_Hydrolase_35 Mem 99.6 1.6E-14 3.5E-19 139.3 15.0 127 38-167 2-135 (143)
28 cd04678 Nudix_Hydrolase_19 Mem 99.6 1.3E-14 2.9E-19 136.6 13.8 122 37-173 2-123 (129)
29 cd03671 Ap4A_hydrolase_plant_l 99.6 3.3E-14 7.1E-19 137.6 15.9 121 36-164 2-132 (147)
30 cd04696 Nudix_Hydrolase_37 Mem 99.6 1.9E-14 4.1E-19 135.0 13.7 112 38-163 3-114 (125)
31 cd04681 Nudix_Hydrolase_22 Mem 99.6 1.6E-14 3.6E-19 136.0 13.1 111 39-161 3-113 (130)
32 cd04691 Nudix_Hydrolase_32 Mem 99.6 2.3E-14 5.1E-19 133.2 13.8 110 37-165 1-110 (117)
33 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 2.7E-14 5.8E-19 135.9 14.0 118 37-167 2-119 (137)
34 cd04664 Nudix_Hydrolase_7 Memb 99.6 1.8E-14 4E-19 135.7 12.6 115 38-165 2-120 (129)
35 cd04687 Nudix_Hydrolase_28 Mem 99.6 4E-14 8.6E-19 133.4 14.5 120 38-163 2-121 (128)
36 PRK09438 nudB dihydroneopterin 99.6 4.1E-14 8.9E-19 136.8 14.2 116 36-164 6-130 (148)
37 cd03674 Nudix_Hydrolase_1 Memb 99.6 5.6E-14 1.2E-18 134.5 14.0 114 37-162 2-122 (138)
38 cd03673 Ap6A_hydrolase Diadeno 99.5 7.2E-14 1.6E-18 131.2 13.4 113 38-164 2-117 (131)
39 cd04677 Nudix_Hydrolase_18 Mem 99.5 6.6E-14 1.4E-18 132.0 12.0 115 36-164 6-123 (132)
40 PLN02325 nudix hydrolase 99.5 1.3E-13 2.9E-18 133.1 14.2 118 36-163 8-125 (144)
41 cd04680 Nudix_Hydrolase_21 Mem 99.5 6E-14 1.3E-18 129.9 11.2 107 39-163 2-108 (120)
42 cd03427 MTH1 MutT homolog-1 (M 99.5 8.8E-14 1.9E-18 132.3 12.5 110 38-163 2-111 (137)
43 cd04689 Nudix_Hydrolase_30 Mem 99.5 1.8E-13 3.9E-18 128.3 14.3 112 37-161 1-112 (125)
44 cd04699 Nudix_Hydrolase_39 Mem 99.5 1.5E-13 3.2E-18 128.7 13.6 113 39-164 3-115 (129)
45 cd04670 Nudix_Hydrolase_12 Mem 99.5 2.5E-13 5.5E-18 127.6 13.9 110 38-162 3-112 (127)
46 cd04688 Nudix_Hydrolase_29 Mem 99.5 2.5E-13 5.5E-18 127.5 13.8 113 37-162 2-117 (126)
47 cd03429 NADH_pyrophosphatase N 99.5 2.7E-13 5.9E-18 128.7 14.0 106 39-163 2-107 (131)
48 PRK00714 RNA pyrophosphohydrol 99.5 4.6E-13 1E-17 131.1 15.3 118 36-164 7-136 (156)
49 cd03675 Nudix_Hydrolase_2 Cont 99.5 4.4E-13 9.5E-18 127.1 14.5 112 39-165 2-113 (134)
50 cd04690 Nudix_Hydrolase_31 Mem 99.5 3.4E-13 7.3E-18 124.8 13.1 107 40-162 3-109 (118)
51 cd04671 Nudix_Hydrolase_13 Mem 99.5 3.1E-13 6.7E-18 127.0 12.6 107 39-161 2-108 (123)
52 cd04695 Nudix_Hydrolase_36 Mem 99.5 9.8E-13 2.1E-17 124.6 15.0 102 48-164 12-115 (131)
53 cd03428 Ap4A_hydrolase_human_l 99.5 5.1E-13 1.1E-17 125.8 12.9 113 38-165 3-117 (130)
54 cd04676 Nudix_Hydrolase_17 Mem 99.5 5E-13 1.1E-17 124.7 12.3 111 39-163 4-117 (129)
55 cd04672 Nudix_Hydrolase_14 Mem 99.5 5.1E-13 1.1E-17 125.0 12.1 110 38-163 3-112 (123)
56 cd04685 Nudix_Hydrolase_26 Mem 99.5 8.3E-13 1.8E-17 125.9 13.7 120 38-163 1-123 (133)
57 COG1051 ADP-ribose pyrophospha 99.5 6.4E-13 1.4E-17 128.6 12.7 114 36-163 9-122 (145)
58 cd04666 Nudix_Hydrolase_9 Memb 99.5 1.6E-12 3.4E-17 122.2 14.9 114 39-165 2-117 (122)
59 PRK10546 pyrimidine (deoxy)nuc 99.4 1.4E-12 3.1E-17 123.6 14.2 100 48-163 13-112 (135)
60 cd03672 Dcp2p mRNA decapping e 99.4 1.1E-12 2.3E-17 127.0 12.6 111 39-166 3-114 (145)
61 cd04669 Nudix_Hydrolase_11 Mem 99.4 1.4E-12 3E-17 122.1 12.1 107 40-163 3-114 (121)
62 KOG4313 Thiamine pyrophosphoki 99.4 4.5E-13 9.8E-18 134.7 9.1 199 4-215 100-305 (306)
63 cd04667 Nudix_Hydrolase_10 Mem 99.4 1.9E-12 4.2E-17 119.1 12.7 92 49-163 10-101 (112)
64 PRK10776 nucleoside triphospha 99.4 2.8E-12 6E-17 119.9 13.4 106 40-162 7-112 (129)
65 cd03425 MutT_pyrophosphohydrol 99.4 2.7E-12 5.9E-17 118.5 12.8 106 40-162 4-109 (124)
66 PRK00241 nudC NADH pyrophospha 99.4 1.5E-12 3.3E-17 137.3 12.4 116 27-162 117-237 (256)
67 cd04686 Nudix_Hydrolase_27 Mem 99.4 5.4E-12 1.2E-16 119.8 14.6 113 39-163 2-119 (131)
68 cd04511 Nudix_Hydrolase_4 Memb 99.4 2.8E-12 6.1E-17 121.3 12.4 104 38-161 14-117 (130)
69 cd02883 Nudix_Hydrolase Nudix 99.4 5.1E-12 1.1E-16 115.7 13.1 110 39-162 2-111 (123)
70 PRK05379 bifunctional nicotina 99.4 5.1E-12 1.1E-16 138.8 15.4 120 37-163 203-322 (340)
71 cd04661 MRP_L46 Mitochondrial 99.4 4.1E-12 8.9E-17 120.8 11.4 106 49-165 12-122 (132)
72 TIGR00586 mutt mutator mutT pr 99.3 1.3E-11 2.9E-16 115.6 13.7 107 39-162 6-112 (128)
73 PRK10707 putative NUDIX hydrol 99.3 1.8E-11 3.8E-16 123.7 15.0 113 39-163 32-146 (190)
74 PRK11762 nudE adenosine nucleo 99.3 4.8E-11 1E-15 120.1 15.3 115 39-167 49-163 (185)
75 TIGR00052 nudix-type nucleosid 99.3 2.6E-11 5.5E-16 122.1 13.1 129 26-167 37-169 (185)
76 cd04662 Nudix_Hydrolase_5 Memb 99.3 4.5E-11 9.7E-16 112.4 12.1 109 39-157 2-126 (126)
77 PLN02709 nudix hydrolase 99.3 6.3E-11 1.4E-15 121.4 14.1 120 34-163 30-155 (222)
78 TIGR02705 nudix_YtkD nucleosid 99.2 2.2E-10 4.7E-15 111.8 16.5 125 39-188 26-151 (156)
79 PRK10729 nudF ADP-ribose pyrop 99.2 3.3E-10 7.1E-15 115.6 15.5 128 26-167 42-175 (202)
80 PRK08999 hypothetical protein; 99.2 3.2E-10 6.8E-15 123.2 13.8 107 39-162 7-113 (312)
81 cd04665 Nudix_Hydrolase_8 Memb 99.1 4.6E-10 1E-14 104.9 12.6 100 40-160 3-102 (118)
82 PRK15009 GDP-mannose pyrophosp 99.1 1.3E-09 2.8E-14 110.3 16.5 127 26-167 38-170 (191)
83 COG2816 NPY1 NTP pyrophosphohy 99.1 8.8E-11 1.9E-15 122.8 7.0 119 27-165 129-252 (279)
84 cd04674 Nudix_Hydrolase_16 Mem 99.0 2.9E-09 6.4E-14 99.4 12.6 53 51-106 16-68 (118)
85 KOG3084 NADH pyrophosphatase I 98.9 2.5E-09 5.4E-14 112.1 6.6 134 39-192 189-332 (345)
86 cd03670 ADPRase_NUDT9 ADP-ribo 98.9 1.1E-08 2.5E-13 102.6 11.1 42 51-98 50-91 (186)
87 COG0494 MutT NTP pyrophosphohy 98.8 3.7E-08 8E-13 92.2 11.2 118 39-163 13-134 (161)
88 cd04663 Nudix_Hydrolase_6 Memb 98.8 6.5E-08 1.4E-12 91.3 11.9 51 40-98 3-55 (126)
89 PLN03143 nudix hydrolase; Prov 98.7 1.7E-07 3.6E-12 100.2 14.0 148 14-165 95-267 (291)
90 KOG3069 Peroxisomal NUDIX hydr 98.7 5.9E-08 1.3E-12 98.4 9.2 118 36-162 42-162 (246)
91 KOG2839 Diadenosine and diphos 98.6 1.5E-07 3.3E-12 89.0 9.0 117 36-165 8-127 (145)
92 KOG0648 Predicted NUDIX hydrol 98.6 1.9E-08 4.1E-13 105.9 2.8 116 38-164 116-232 (295)
93 cd03431 DNA_Glycosylase_C DNA 98.4 5.1E-06 1.1E-10 76.2 13.1 102 38-162 3-104 (118)
94 KOG3041 Nucleoside diphosphate 97.9 0.00019 4.2E-09 71.2 13.4 117 40-165 76-196 (225)
95 COG4119 Predicted NTP pyrophos 97.9 5E-05 1.1E-09 70.0 8.0 89 65-168 35-140 (161)
96 PF14815 NUDIX_4: NUDIX domain 97.3 0.00055 1.2E-08 63.2 7.1 101 42-162 2-102 (114)
97 COG4112 Predicted phosphoester 96.6 0.017 3.7E-07 55.9 10.0 128 25-162 48-186 (203)
98 KOG4195 Transient receptor pot 94.8 0.055 1.2E-06 54.9 6.0 39 51-95 140-178 (275)
99 COG4227 Antirestriction protei 92.0 0.19 4E-06 52.6 4.5 65 570-642 201-265 (316)
100 PF13869 NUDIX_2: Nucleotide h 91.5 0.94 2E-05 45.7 8.6 118 32-162 39-169 (188)
101 KOG4432 Uncharacterized NUDIX 91.3 0.81 1.8E-05 48.6 8.2 126 36-168 228-381 (405)
102 KOG2937 Decapping enzyme compl 88.5 0.091 2E-06 56.6 -1.3 108 40-164 85-193 (348)
103 KOG4432 Uncharacterized NUDIX 87.8 0.79 1.7E-05 48.7 5.0 60 69-135 82-141 (405)
104 PRK10880 adenine DNA glycosyla 87.2 3.2 7E-05 46.2 9.7 50 38-97 231-280 (350)
105 cd04278 ZnMc_MMP Zinc-dependen 78.2 0.83 1.8E-05 44.6 0.6 18 571-588 106-123 (157)
106 cd04279 ZnMc_MMP_like_1 Zinc-d 77.6 0.8 1.7E-05 44.6 0.3 17 572-588 104-120 (156)
107 cd04268 ZnMc_MMP_like Zinc-dep 77.0 0.74 1.6E-05 44.9 -0.1 19 570-588 92-110 (165)
108 PF14443 DBC1: DBC1 75.5 9.6 0.00021 36.1 6.7 68 65-132 23-93 (126)
109 cd04277 ZnMc_serralysin_like Z 73.7 1 2.3E-05 45.2 -0.1 19 570-588 111-129 (186)
110 PF00413 Peptidase_M10: Matrix 73.7 0.98 2.1E-05 43.5 -0.3 19 570-588 103-121 (154)
111 KOG1689 mRNA cleavage factor I 70.5 9.9 0.00021 37.5 5.7 57 32-95 65-122 (221)
112 KOG4548 Mitochondrial ribosoma 68.1 21 0.00046 37.6 7.9 42 52-97 141-183 (263)
113 smart00235 ZnMc Zinc-dependent 67.7 1.6 3.4E-05 41.6 -0.3 15 574-588 88-102 (140)
114 cd00203 ZnMc Zinc-dependent me 66.3 1.9 4.2E-05 42.0 -0.0 19 570-588 94-112 (167)
115 cd04327 ZnMc_MMP_like_3 Zinc-d 58.9 2.9 6.4E-05 42.6 -0.2 18 571-588 91-108 (198)
116 PF09471 Peptidase_M64: IgA Pe 58.6 3 6.5E-05 44.6 -0.2 16 571-586 215-230 (264)
117 PF13688 Reprolysin_5: Metallo 56.4 3.4 7.3E-05 41.6 -0.3 18 570-587 140-157 (196)
118 PF13582 Reprolysin_3: Metallo 55.0 3.6 7.8E-05 38.1 -0.3 14 573-586 108-121 (124)
119 TIGR01084 mutY A/G-specific ad 54.1 25 0.00055 37.9 5.9 34 37-71 226-259 (275)
120 cd04271 ZnMc_ADAM_fungal Zinc- 52.1 4.9 0.00011 42.1 0.1 14 574-587 147-160 (228)
121 cd04270 ZnMc_TACE_like Zinc-de 49.2 5.9 0.00013 41.9 0.1 16 571-586 166-181 (244)
122 PRK13910 DNA glycosylase MutY; 46.7 24 0.00051 38.4 4.3 29 39-71 188-216 (289)
123 cd04276 ZnMc_MMP_like_2 Zinc-d 46.4 6.5 0.00014 40.2 -0.0 17 572-588 116-132 (197)
124 PF13583 Reprolysin_4: Metallo 45.5 6.8 0.00015 40.2 -0.1 16 573-588 138-153 (206)
125 PF12388 Peptidase_M57: Dual-a 43.7 8.5 0.00018 39.7 0.3 16 572-587 133-148 (211)
126 PF13574 Reprolysin_2: Metallo 42.7 6.4 0.00014 39.2 -0.7 19 570-588 109-127 (173)
127 cd04267 ZnMc_ADAM_like Zinc-de 42.2 8.9 0.00019 38.5 0.2 17 572-588 133-149 (192)
128 cd04280 ZnMc_astacin_like Zinc 39.6 8.7 0.00019 38.6 -0.3 18 571-588 73-90 (180)
129 cd04283 ZnMc_hatching_enzyme Z 37.9 9.6 0.00021 38.5 -0.3 18 572-589 77-94 (182)
130 PF02031 Peptidase_M7: Strepto 35.1 9.8 0.00021 36.1 -0.7 14 573-586 78-91 (132)
131 cd04273 ZnMc_ADAMTS_like Zinc- 34.5 12 0.00025 38.3 -0.4 15 572-586 140-154 (207)
132 cd04269 ZnMc_adamalysin_II_lik 34.4 15 0.00031 37.1 0.3 15 572-586 131-145 (194)
133 PF01400 Astacin: Astacin (Pep 34.2 11 0.00023 38.3 -0.7 18 572-589 79-96 (191)
134 cd04281 ZnMc_BMP1_TLD Zinc-dep 33.6 13 0.00028 38.2 -0.2 18 572-589 87-104 (200)
135 PF05572 Peptidase_M43: Pregna 33.6 12 0.00027 36.6 -0.3 18 571-588 68-85 (154)
136 KOG3675 Dipeptidyl peptidase I 32.5 22 0.00049 39.1 1.3 36 217-252 22-60 (417)
137 PF03487 IL13: Interleukin-13; 32.1 39 0.00084 25.5 2.1 22 73-94 15-36 (43)
138 PF11350 DUF3152: Protein of u 31.1 18 0.00038 37.1 0.3 19 572-590 139-157 (203)
139 COG3824 Predicted Zn-dependent 29.9 20 0.00043 33.6 0.4 14 573-586 110-123 (136)
140 smart00685 DM14 Repeats in fly 28.8 2.8E+02 0.0061 22.9 6.8 45 697-746 9-53 (59)
141 cd04282 ZnMc_meprin Zinc-depen 28.7 17 0.00037 38.2 -0.3 18 572-589 120-137 (230)
142 cd04272 ZnMc_salivary_gland_MP 27.3 20 0.00043 37.1 -0.2 15 573-587 146-160 (220)
143 cd06461 M2_ACE Peptidase famil 26.7 3.9E+02 0.0084 31.3 10.2 54 573-634 248-305 (477)
144 COG5549 Predicted Zn-dependent 26.6 25 0.00054 36.1 0.4 15 572-586 187-201 (236)
145 PF01421 Reprolysin: Reprolysi 25.8 21 0.00046 36.1 -0.3 15 572-586 131-145 (199)
146 PHA02943 hypothetical protein; 25.2 4.6E+02 0.01 25.9 8.6 72 656-728 34-123 (165)
147 PRK06393 rpoE DNA-directed RNA 24.9 42 0.00091 28.1 1.4 17 452-468 30-46 (64)
148 PF02128 Peptidase_M36: Fungal 24.5 35 0.00075 38.4 1.1 49 570-623 183-232 (378)
149 PF05548 Peptidase_M11: Gameto 22.8 31 0.00067 37.9 0.3 15 574-588 152-166 (314)
150 cd04275 ZnMc_pappalysin_like Z 22.6 24 0.00052 36.9 -0.6 17 572-588 137-153 (225)
151 KOG1565 Gelatinase A and relat 22.2 35 0.00075 39.7 0.6 18 571-588 210-227 (469)
152 cd02641 R3H_Smubp-2_like R3H d 21.4 1.5E+02 0.0033 24.3 4.0 36 202-237 4-42 (60)
153 cd06457 M3A_MIP Peptidase M3 m 21.0 28 0.00061 40.3 -0.5 37 573-612 249-290 (458)
154 TIGR02289 M3_not_pepF oligoend 20.4 33 0.00071 40.6 -0.1 47 695-744 480-528 (549)
155 PF04298 Zn_peptidase_2: Putat 20.3 37 0.00081 35.4 0.3 14 573-586 90-103 (222)
156 PF06114 DUF955: Domain of unk 20.3 31 0.00068 30.8 -0.3 44 573-623 43-86 (122)
No 1
>PLN02791 Nudix hydrolase homolog
Probab=100.00 E-value=1.4e-168 Score=1457.13 Aligned_cols=747 Identities=78% Similarity=1.220 Sum_probs=702.7
Q ss_pred cccccEEEEcCCCCcccccccccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHH
Q 004387 6 VQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLIS 85 (757)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eA 85 (757)
|++|+|+|||++++++|.+++|..+|..|.+|++|+|+|++.++++|||+||+..|.+|||+|+++||||++.|||+.+|
T Consensus 1 ~~eE~~DI~De~g~~~G~~~~R~evH~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eA 80 (770)
T PLN02791 1 MMEEHLDVLTAAGEKTGVSKPRGEVHRDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLS 80 (770)
T ss_pred CCceEEEEECCCCCCCCccccHHhhccCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHH
Confidence 67899999999999999878999999999999999999999546899999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 86 AQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 86 AiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
|+||+.||+||.+....+..++.+.+......+.+++++++++|.+....+.+..+++++++||++++|++++|+.+++.
T Consensus 81 A~REL~EELGI~l~~~~l~~l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 81 AQRELEEELGIILPKDAFELLFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred HHHHHHHHhCCCCChhheeeeeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHHh
Confidence 99999999999876666778887766544445557788999999987655555556789999999999999999999998
Q ss_pred cCCCCcccCCCCCchHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhccccchhccCCCHHHHHHHHHHHHHHhhhchheee
Q 004387 166 KDDPSFVPYDVNGGYGQLFNIISQRYKENTMERSLTLQKQLRRYAHVSLNAELAGLSDADKEALVLVIKAATVMDEIFYL 245 (757)
Q Consensus 166 ~~~~~f~p~~~~~~~~~~f~~l~~~~~~~~~~r~~~L~~rl~r~~pv~l~~df~~Ls~~Ek~y~~~l~~Aa~~~~~i~~~ 245 (757)
..+..|+||..++.+..+|+.+.+++..+...|..+|++++++|+||.++.|+++||++||+++.+|++||++||+|||+
T Consensus 161 ~~~~~fvP~~~~~~~~~~f~~i~~~~~~~~~~r~~~l~~~l~~~~~~~l~~d~~~l~~~~~~~l~~l~~aa~~~d~~f~~ 240 (770)
T PLN02791 161 KEDPAYVPYDVNGEYGQLFSIIEKRYKVNTEARSLTLQKQLNRYAPVNLEAELTGLSEGDRKALSYIIKAAKILDDIFYE 240 (770)
T ss_pred cCCCceeeccccchHHHHHHHHHHHHhcccHHHHHHHHHHhhCcceeEeeeccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999987788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCChhHHHHHHhccccchhhHHhHHHHHhcCCCCCCCCCCCcCccCcchhhhhcCCCCCCcCccccccccccCCCCC
Q 004387 246 QVWYSNPVLRDWLKEHADASELDKLKWMYYLINKSPWSSLDENEAFLTTADSAVKLLPDATKPVNGWKGLEYKASFPLPK 325 (757)
Q Consensus 246 Q~~~e~~~i~~~i~~~~~~~~~~~~~~~~f~~n~Gn~~~~~gd~kFip~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 325 (757)
|+++.++.+++.|...+..++++..++.||++|+|||++++||++|+++.|++|+.|.+.++....|++++|+..++..+
T Consensus 241 q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~in~gpW~~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (770)
T PLN02791 241 QVWNSNPALRDWLKAHAEASELDKLKWAYYSINKSPWSCLDENEAFLTTADSAVKLLPGATKSVSGWKGLEYRAAFPVEK 320 (770)
T ss_pred HhccCCHHHHHhhhcccccCccchHHHHHHHHhcCcccccCCCCCCcCCcchhhhcccccccccccccccchhccccCCC
Confidence 99999999999999887777777888999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhccHhhhhhccCCceEEEecCCcccccCccccccccCCCccccCCceEEeecccccHHH
Q 004387 326 PPGANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSY 405 (757)
Q Consensus 326 ~~gs~yYp~~it~~e~~~~~~~~~~~~~~~~~~~~t~i~r~~~~~l~as~~~~~~~~~~~~~~~~g~~~~~~y~g~y~~~ 405 (757)
|+|+||||+|||++||++|.+.|++.+++.+.++||+|||+++.+|.+|...+. . ...+..|+|++||||++|+++
T Consensus 321 p~ga~~YP~d~~~~ef~~~~~~~~~~~~~~~~~~~t~i~r~~~~~~~~~~~~~~---~-~~~~~~~~L~~vpys~~Y~~~ 396 (770)
T PLN02791 321 PPGANFYPPDMDKMEFELWKSGLTEKEQEDATGFFTVIKRHSELSLDASDQLDG---S-TQTDTSHDLFSVPYSEEYKPF 396 (770)
T ss_pred CCCCCcCCCCCCHHHHHHHHhhCChhhHHhhcCCeEEEEecccccccccccccc---c-cccCCCCCEEEecccHHHHHH
Confidence 999999999999999999999999989999999999999997666666643332 1 112236899999999999999
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcccCchhhhhHHHhhc----------------------CCceeEeeeeCh
Q 004387 406 LTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIEL----------------------ATFEAFIGIRDD 463 (757)
Q Consensus 406 l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~~~s~~~Wv~d----------------------a~~E~~V~i~d~ 463 (757)
|++|+.+|++|++||+|++|++||.+||++|+|++|++||++||++ |+|||||+|+|+
T Consensus 397 l~~i~~~L~~A~~~a~n~~q~~~L~~~a~~F~t~~~~~s~~~Wvk~~~~ve~~iGfiEtY~Dpl~G~ka~fE~fV~i~d~ 476 (770)
T PLN02791 397 LKKAAELLHKAGDCADSPSLKRLLKSKAEAFLSNDYYESDIAWMELDSKLDVTIGPYETYEDGLFGYKATFEAFIGIRDD 476 (770)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhccchHHHHHHHHhcCCceeEeeCCceeccCcccCcceeeEEEEEEeCH
Confidence 9999999999999999999999999999999999999999999998 999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHhCCCCcccccCCCCCCCcceehhhhhcCCCCCCceeeecCCCchhHHhccceeEEEeccchh
Q 004387 464 KATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSE 543 (757)
Q Consensus 464 ~~s~k~~~l~~~a~~~~~~LPw~~~~ek~~~~~~~~~~~~vl~~ag~~~~~~~~giNlPN~~~ir~~~G~Knv~l~N~~~ 543 (757)
++|+||++|+++||+||++|||+++|||++|..|||+||+|+++|||+.|++||||||||||+||+++|||||||+|||+
T Consensus 477 e~t~k~~~~~~~a~~~e~~LP~~~~~~k~~~~~~~~~~i~v~~~aGd~~~~~pigiNLPN~d~Ir~~~G~K~V~L~Nv~~ 556 (770)
T PLN02791 477 KATAQLKLFGDNLQTLEDNLPLDDVYKSTNVSAAPIRVIQLLYNSGDVKGPQTVAFNLPNDERIVKERGTSMVMLKNVSE 556 (770)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhcccccCCCCCceeehhhhccccCCCCCceeECCCcHHHHhhcCceEeeecchhh
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred hccccccccccccccCHhhHHhhhcccchhhhhhhhcccCCCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHH
Q 004387 544 AKFKNILRPIADVCIRKEQQELVDFDSFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWAL 623 (757)
Q Consensus 544 a~~~~~~~~~~~~~i~~~~~~~~~~~af~~~v~lHElgHg~Gk~~~~~~~g~~~t~~~~~~~~~s~~EE~rAd~vglyl~ 623 (757)
|++++++.|++++|++++|++++++++||+||++|||||||||+++.+++|++.||+.+||+++|||||||||+||||++
T Consensus 557 A~~~~~~~~i~e~~i~~~~~~~~~~~af~~~v~lHElgHGsG~~~~~~~~g~~~t~~~~l~~~~s~lEE~RAD~vgLy~l 636 (770)
T PLN02791 557 AKFKHILKPIAEVCISEEQKGYVDFESFFTHTICHECCHGIGPHTITLPDGQKSTVRLELQEVHSALEEAKADIVGLWAL 636 (770)
T ss_pred hhccccccchhhhcCCHHHHHhhccccHHHHHHHHHhhccccccceecCCCCcCcHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999999999999887778777899999999999999999999999999
Q ss_pred HHHHhcCCCChhhhhHHHHHHHHHHHhhcccCccchhhhHHHHHHHHHHhcCCeEEccCCcEEEeHhhHHHHHHHHHHHH
Q 004387 624 KFLIGRDLLPKSLVKSMYVSFLAGCFRSVRFGLEESHGKGQALQFNWLFEKEAFILHSDDTFSVDFDKVEGAVESLSTEI 703 (757)
Q Consensus 624 ~~ll~~G~~~~~~~~~~y~~~l~~~~~~l~~~~~qaH~~a~~~i~~~~~e~g~~~~~~~g~~~vd~~k~~~av~~ll~~l 703 (757)
.+|+++|++++...+.+|++||+|++|+||||..|||||||++|+|||+|+|+|+.++||+|+||++||+.||++||++|
T Consensus 637 ~~l~~~g~l~~~~~~~~Y~~~l~~~~~~vR~GleqAH~~ar~~i~~~~le~G~~~~~~dg~~~vD~~Ki~~av~~ll~~l 716 (770)
T PLN02791 637 HFLIDKGLLSKSLEKSMYVSFLAGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGTFSVDFAKVEDAVESLSREI 716 (770)
T ss_pred HHhhhcCCCCcHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHcCCEEEcCCceEEEcHHHHHHHHHHHHHHH
Confidence 99999999988888999999999999999999999999999999999999999887778999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHhcCCCHHHHHHHHHhhcCCCCcccccchhhHhhhh
Q 004387 704 LTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIAPTFTAVNKLL 756 (757)
Q Consensus 704 ~~~k~~gD~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~p~di~~~~~~~~~~~ 756 (757)
|+|||+||+++|++||++|++|+|+++.+|+++++++|||||+|+|+++++++
T Consensus 717 ~~iks~GD~~aa~~l~e~y~~v~~~~~~~l~~~~~~~~pvdi~~~~~~~~~~~ 769 (770)
T PLN02791 717 LTIQAKGDKAAAISLLQKYATLTPPLRVALEKLEDVQVPVDIVPTFPTAEKLL 769 (770)
T ss_pred HeeecccCHHHHHHHHHHhccCCHHHHHHHHHhhhCCCCCCccccccchhhhc
Confidence 99999999999999999999999999999999999999999999999999886
No 2
>PF03571 Peptidase_M49: Peptidase family M49; InterPro: IPR005317 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M49 (dipeptidyl-peptidase III family, clan M-). The predicted active site residues occur in the motif HEXXXH which is unlike that in any other family. The dipeptidyl peptidase III aminopeptidases cleave dipeptides from the N-terminal of peptides consisting of four or more amino acids and have a broad specificity.; GO: 0008239 dipeptidyl-peptidase activity, 0006508 proteolysis, 0005737 cytoplasm; PDB: 3T6B_A 3FVY_A 3T6J_A 3CSK_A.
Probab=100.00 E-value=1.6e-104 Score=890.53 Aligned_cols=399 Identities=24% Similarity=0.321 Sum_probs=320.7
Q ss_pred CCCCCCC--CCCCCCCCCHHHHHHHHhhccHhhhhhccCCceEEEecCCcc---cccCccccccccCCCccccCCceEEe
Q 004387 322 PLPKPPG--ANFYPPDMDKMEFELWKSSLTEKQQEDATSFFTVIKRRSEFN---LDSSLSGHIVDATNHSVGSIYDLYSV 396 (757)
Q Consensus 322 ~~~~~~g--s~yYp~~it~~e~~~~~~~~~~~~~~~~~~~~t~i~r~~~~~---l~as~~~~~~~~~~~~~~~~g~~~~~ 396 (757)
+|.|++| |+|||++||++||+.|++.| +.+++.++||||+|.++.. ++||+++............+|..+.+
T Consensus 20 LG~p~~~~~s~YY~~~itk~ei~~v~~~l---~~~~i~~eNTRl~K~~~~~yei~~AS~~~~~~~~~~~~~~~~g~~v~~ 96 (549)
T PF03571_consen 20 LGFPSDGGQSTYYSSNITKEEIEAVQKFL---EKKGISPENTRLFKDGDGTYEILVASVETSEPPEYTPKGEFEGKKVKL 96 (549)
T ss_dssp BSSGCCTSB-TTEETT--HHHHHHHHHCH---HHCT--STTEEEEECCTCEEEEEEE-SSSSSS-TTTTCECCTTEEEEE
T ss_pred ccccCCCCeeeecCCCCCHHHHHHHHHHH---HhcCCchhhceEEecCCCcEEEEecccccCCCCccccccccCCcEEEe
Confidence 4555555 99999999999999999999 5789999999999986643 99999887533222123346888999
Q ss_pred ecccccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcccC---chhhhhHHHhhc----------------------
Q 004387 397 PYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSN---NYYDSDIAWIEL---------------------- 451 (757)
Q Consensus 397 ~y~g~y~~~l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg---~~~~s~~~Wv~d---------------------- 451 (757)
+| |||+++|++||.+|++|++||+|++|++||..||++|+|| +|++||++||+|
T Consensus 97 ~~-Gdy~~~l~~i~~~L~~A~~~a~N~~q~~~L~~yi~~F~tGs~~~~~~s~~~Wv~D~~p~VE~~iGFiEtYrDp~G~r 175 (549)
T PF03571_consen 97 TY-GDYSPELKKIVEHLEKAAKYAANETQKKMLEKYIESFQTGSLDAHKESQRAWVKDKGPRVETNIGFIETYRDPFGVR 175 (549)
T ss_dssp EE-EETHHHHHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHCS-S-SEEEEEEEEE-TTSTTS-S
T ss_pred CC-CchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeeeecCceeccCCCCCc
Confidence 96 9999999999999999999999999999999999999998 889999999998
Q ss_pred CCceeEeeeeChHHHHHHHHHhhhHHHHHHhCCCCcccccCCCCCCCcceehhhhhcCCCCCCceeeecCCCchhHHhcc
Q 004387 452 ATFEAFIGIRDDKATAQVKLFGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDR 531 (757)
Q Consensus 452 a~~E~~V~i~d~~~s~k~~~l~~~a~~~~~~LPw~~~~ek~~~~~~~~~~~~vl~~ag~~~~~~~~giNlPN~~~ir~~~ 531 (757)
|||||||+|+|+++|+||++||++|++|+++|||+++|||++|.+||||||+||+|||| ++|+|||||||||||+++
T Consensus 176 ae~EgfVai~d~e~s~k~~~lv~~a~~f~~~LPw~~~fekd~f~~pdftsl~vl~fags---~ip~GINlPNyd~IR~~~ 252 (549)
T PF03571_consen 176 AEFEGFVAIVDKEESKKLSKLVDNAQEFIDHLPWPKEFEKDKFLAPDFTSLDVLTFAGS---GIPAGINLPNYDDIRQEE 252 (549)
T ss_dssp -EEEEEEEEEEHCCHHHHHHHHHTHHHHHHHSSS-GGGS-SS-----EEEEEEEEEESS------SEEEE-S-HHHHHHT
T ss_pred cccceeeeccCHHHHHHHHHHHHHHHHHHhcCCCChhhccccCCCCCceEEEEEEecCC---CCccceeCCChHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 589999999999999999
Q ss_pred ceeEEEeccchhhccccccccccccccCHhhHHhhhcc---cchhhhhhhhc-ccCCCCCCcccCCc-------------
Q 004387 532 GTSMVMLKNVSEAKFKNILRPIADVCIRKEQQELVDFD---SFFTHNICHEC-CHGIGPHSITLPDG------------- 594 (757)
Q Consensus 532 G~Knv~l~N~~~a~~~~~~~~~~~~~i~~~~~~~~~~~---af~~~v~lHEl-gHg~Gk~~~~~~~g------------- 594 (757)
|||||+|+|||+|+++... | ..||++++++++.++ +||+||++||| ||||||++.-..+|
T Consensus 253 GfKnV~L~Nv~~A~~~~~~-~--~~fi~~~d~~~~~~~~~~af~~~v~lHEllGHGsGkll~~~~~g~~Nfd~~~~~~pl 329 (549)
T PF03571_consen 253 GFKNVSLGNVLSAKFKAIR-P--ITFIDEEDQELFKKYRFDAFFVQVGLHELLGHGSGKLLQETADGTFNFDKENPINPL 329 (549)
T ss_dssp --EEEEEHHHHCCCCHTSG-G---TTC-CCCHHHHHHHHHHHHHHHHHHHHHCCCCS----BEETTC-ESS-TTT-BBTT
T ss_pred cceeEEEechhhhhhccCC-C--CcccchhHHHHHHHhcCchHhhhhhHHhhccCcCcceeecCCCCcccCCcCCCCCCC
Confidence 9999999999999998764 1 368999999988776 89999999999 99999943221111
Q ss_pred ----------ccccccchhhcccchHHhHHHHHHHHHHH--HHHHhc-CCCCh-hhhhHHHHHHHHH---HHhhccc---
Q 004387 595 ----------RQSTVRLELQELHSAMEEAKADIVGLWAL--KFLIGR-DLLPK-SLVKSMYVSFLAG---CFRSVRF--- 654 (757)
Q Consensus 595 ----------~~~t~~~~~~~~~s~~EE~rAd~vglyl~--~~ll~~-G~~~~-~~~~~~y~~~l~~---~~~~l~~--- 654 (757)
+||||+|+||++||||||||||+|||||| ++||++ |+.+. +++++.|++||.| +|++|+|
T Consensus 330 tg~~i~s~Y~~geTw~s~Fg~~ast~EECRAe~vglYL~~~~~vLeifg~~~~~~~~dv~y~~~l~~~~~GL~~Le~y~p 409 (549)
T PF03571_consen 330 TGKPITSWYKPGETWDSVFGSLASTYEECRAELVGLYLIADPEVLEIFGYTDKEEADDVIYANWLSMLRAGLRALEFYNP 409 (549)
T ss_dssp TSSB----B-TT--HHHHHCCCHHHHHHHHHHHHHHHHTTSHHHHHHTT--TCHCHHHHHHHHHHHHHHHHHHGGGGEET
T ss_pred CCCCcceeCCCCCcccchhhcccchHHHHHHHHHHhHHhCCHhHHHHcCCCCcccHHHHHHHHHHHHHHHHhhhheeeCC
Confidence 69999999999999999999999999999 899998 77666 5889999999997 7888988
Q ss_pred ---CccchhhhHHHHHHHHHHhcCC--eE--EccC-C---cEEEeHhhH----HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 004387 655 ---GLEESHGKGQALQFNWLFEKEA--FI--LHSD-D---TFSVDFDKV----EGAVESLSTEILTIQARGDKEAASLLL 719 (757)
Q Consensus 655 ---~~~qaH~~a~~~i~~~~~e~g~--~~--~~~~-g---~~~vd~~k~----~~av~~ll~~l~~~k~~gD~~~~~~~~ 719 (757)
.|+||||||||+|++||+++|. ++ ...+ + .+++|++|| ++|||+||++||+||||||+++|++||
T Consensus 410 ~~kkW~QAHmqaRf~Il~~lle~g~~~v~i~~~~~~~~~l~V~~Drski~t~Gr~aig~~L~~LqvyKstaD~~~g~~ly 489 (549)
T PF03571_consen 410 ETKKWGQAHMQARFAILRVLLEAGKGFVTIEETKDDKPDLTVKLDRSKIETVGRPAIGEFLLKLQVYKSTADVEAGRELY 489 (549)
T ss_dssp TTTEES-HHHHHHHHHHHHHHHCSTTSEEEEEECTTSCEEEEEE-GCGTTTCHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCCchhHHhhHHHHHHHHHHHHcCCCeEEEEEecCCCCeEEEEEeHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 2999999999999999999655 33 3322 2 358899999 999999999999999999999999999
Q ss_pred HHhcCCCHHHH
Q 004387 720 QKYCTMTQPLK 730 (757)
Q Consensus 720 ~~~~~v~~~~~ 730 (757)
++|+.|++++.
T Consensus 490 e~ys~Vd~~~~ 500 (549)
T PF03571_consen 490 EKYSAVDPEFL 500 (549)
T ss_dssp HHHT---HHHH
T ss_pred hhccCCCHHHH
Confidence 99999999983
No 3
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=100.00 E-value=1.4e-60 Score=493.97 Aligned_cols=302 Identities=20% Similarity=0.283 Sum_probs=264.8
Q ss_pred cccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcccCchhhhhHHHhhc--------CCceeEeeeeChHHHHHHHH
Q 004387 400 EEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIEL--------ATFEAFIGIRDDKATAQVKL 471 (757)
Q Consensus 400 g~y~~~l~~i~~~L~~A~~~a~n~~q~~~L~~~~~~f~tg~~~~s~~~Wv~d--------a~~E~~V~i~d~~~s~k~~~ 471 (757)
|||.-.|..++++|..|.++|+|+ ..|+.||.+|-+.++-+-.++- |||||||+|+||++|+||+.
T Consensus 10 ~D~~~~~~d~~e~l~~~~p~aan~------~~Y~~hf~kgP~~e~~igFIqtyrdp~G~r~efEgfVA~vNKe~saKF~~ 83 (417)
T KOG3675|consen 10 NDIGVSSLDCAEALKLLSPTAANK------MKYVHHFSKGPWYEGLIGFIQTYRDPAGSRGEFEGFVAVVNKEMSAKFSW 83 (417)
T ss_pred cchhHHHHHHHHHHHHhChhhhhh------hhhhhhhhcCchhhhhhhhhhhccccccccchhhhhhhhhhhhhhhhHHH
Confidence 999999999999999999999999 7899999999888888888876 99999999999999999999
Q ss_pred HhhhHHHHHHhCCCCcccccCCCCCCCcceehhhhhcCCCCCCceeeecCCCchhHHhccceeEEEeccchhhccccccc
Q 004387 472 FGDNLQVLEQNLPMDNAYKSKDVIAAPIRVIQLIYNSGDVKGPQTVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKNILR 551 (757)
Q Consensus 472 l~~~a~~~~~~LPw~~~~ek~~~~~~~~~~~~vl~~ag~~~~~~~~giNlPN~~~ir~~~G~Knv~l~N~~~a~~~~~~~ 551 (757)
||.+|++|++.|||..+|+|+.|.+||||++||++|||+ |+|+|||||||+|||++.|||||
T Consensus 84 LV~~AE~~l~~lPw~~~~ekd~Fl~pDftsLdvlafags---GipAGINIpNy~dirq~egfKnv--------------- 145 (417)
T KOG3675|consen 84 LVNNAEQLLPELPWIYALEKDLFLAPDFTQLDVLAFAGS---GIPAGINIPNYTDIRQQEGFKNV--------------- 145 (417)
T ss_pred HhhhHhhhhhcCCcchhhhhhhccCCChhHHHHHHhhcC---CcccccCCCCccHHHHHHHHHHH---------------
Confidence 999999999999999999999999999999999999999 58999999999999999999998
Q ss_pred cccccccCHhhHHhhhcccchhhhhhhhc-ccCCCCCCccc--CC---------cccccccchhhcccchHHhHHHHHHH
Q 004387 552 PIADVCIRKEQQELVDFDSFFTHNICHEC-CHGIGPHSITL--PD---------GRQSTVRLELQELHSAMEEAKADIVG 619 (757)
Q Consensus 552 ~~~~~~i~~~~~~~~~~~af~~~v~lHEl-gHg~Gk~~~~~--~~---------g~~~t~~~~~~~~~s~~EE~rAd~vg 619 (757)
.+-+..++|..+++.|++ |||+=-. +.. |. .+|+||++.|+.+.|++||||||.+|
T Consensus 146 -----------~~~y~~~~f~~~~g~~kl~~~~s~t~-~~~~epe~~~~i~s~yk~~et~~skf~~~~s~~eec~ae~~~ 213 (417)
T KOG3675|consen 146 -----------AAVYSNMGFYKQFGDTKLLGEGSTTT-VPNFEPEIPKEITSRYKSGETLGSKFGQIHSSEEECLAESVG 213 (417)
T ss_pred -----------HHHHhhhhhHhhcCcceecccccccc-cCCcCccchHhhhhhhccceeccchhhhccChHHHHHHHHhh
Confidence 345566799999999999 9998321 111 11 16899999999999999999999999
Q ss_pred HHHH--HHHHhcCCCCh-hhhhHHHHHHHHH--HHhhccc------CccchhhhHHHHHHHHHHhcCC-eE-Ecc-----
Q 004387 620 LWAL--KFLIGRDLLPK-SLVKSMYVSFLAG--CFRSVRF------GLEESHGKGQALQFNWLFEKEA-FI-LHS----- 681 (757)
Q Consensus 620 lyl~--~~ll~~G~~~~-~~~~~~y~~~l~~--~~~~l~~------~~~qaH~~a~~~i~~~~~e~g~-~~-~~~----- 681 (757)
|||+ +.++..|..+. +++++.|++||.+ ...+|+| .|+||||+|||+|+++++|+|. ++ ..+
T Consensus 214 l~l~l~~~vL~~~~~~~~~~~~vi~vnwl~~~~aglALE~~npe~~~W~QaH~~ARfvi~kv~lEageglvkie~T~g~D 293 (417)
T KOG3675|consen 214 LLLLLLRPVLIFFGLGKEEADEVISVNWLSEDRAGLALEFYNPEQKKWGQAHMRARFVIMKVLLEAGEGLVKIEPTTGSD 293 (417)
T ss_pred HHHhhcccceeeeccchhhcceeEeeehhhhhhhhhhhhhcCcccccccchhhhhhhhhhhhHHHhcCCeeEeeccCCCc
Confidence 9999 55665555544 5889999999996 2246777 3999999999999999999886 33 222
Q ss_pred CCcEEEeHhhH----HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHH-------HHH-HHHHhh
Q 004387 682 DDTFSVDFDKV----EGAVESLSTEILTIQARGDKEAASLLLQKYCTMTQP-------LKV-ALQKLE 737 (757)
Q Consensus 682 ~g~~~vd~~k~----~~av~~ll~~l~~~k~~gD~~~~~~~~~~~~~v~~~-------~~~-~l~~~~ 737 (757)
|-.+++|+||| ++|+++||++||+||||||+++|+++|+.|++|++. |++ +|.|.+
T Consensus 294 d~~vrLDrSkI~svG~pal~~FL~rLqvykstgDve~G~~lye~y~tV~d~p~e~~ltlRDivl~rk~ 361 (417)
T KOG3675|consen 294 DARVRLDRSKIDSVGRPALEDFLRRLQVYKSTGDVEGGSKLYEGYATVTDAPPECFLTLRDIVLLRKE 361 (417)
T ss_pred ceeeeecHhhhhhcccHhHHHHHHHHHhhcccccccccceeeeccccccCCCccchhhHHHHHHhhcc
Confidence 23579999999 799999999999999999999999999999999873 344 776665
No 4
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.93 E-value=4.7e-25 Score=217.54 Aligned_cols=158 Identities=28% Similarity=0.456 Sum_probs=131.3
Q ss_pred cccEEEEcCCCCcccccccccccccCCce-eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHH
Q 004387 8 EEHLDVLTMTGQKTGITKPRSEVHRVGDY-HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISA 86 (757)
Q Consensus 8 ~E~~~vvd~~~~~~G~~~~R~~~h~~g~~-hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAA 86 (757)
+|+++|||.+++++|. ++|..+|..|.. |++|+++|++ .+++|||+||+..+..+||.|++|+||++++|||+++||
T Consensus 1 ~e~~~~~d~~~~~~g~-~~r~~~~~~~~~~~~~v~v~i~~-~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa 78 (165)
T cd02885 1 EELVILVDEDDNPIGT-AEKLEAHLKGTLLHRAFSVFLFN-SKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAA 78 (165)
T ss_pred CcEEEEECCCCCCccc-cCHHHHhhcCCcceeEEEEEEEc-CCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHH
Confidence 5899999999999996 889999999998 9999999999 578999999999888999999998899999999999999
Q ss_pred HHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhc
Q 004387 87 QRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAK 166 (757)
Q Consensus 87 iREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~ 166 (757)
+||++||||+.+....+. +..+.|......+ ...+.+.++|.+..... ..++++|+.+++|++++++.+++..
T Consensus 79 ~REl~EEtGl~~~~~~~~-~~~~~~~~~~~~~-~~~~~i~~~f~~~~~~~-----~~~~~~Ev~~~~w~~~~el~~~~~~ 151 (165)
T cd02885 79 QRRLREELGITGDLLELV-LPRFRYRAPDDGG-LVEHEIDHVFFARADVT-----LIPNPDEVSEYRWVSLEDLKELVAA 151 (165)
T ss_pred HHHHHHHhCCCccchhhc-cceEEEEEEcCCC-ceeeEEEEEEEEEeCCC-----CCCCccceeEEEEECHHHHHHHHHh
Confidence 999999999997643332 2444443322222 23456778887775432 2457789999999999999999999
Q ss_pred CCCCcccC
Q 004387 167 DDPSFVPY 174 (757)
Q Consensus 167 ~~~~f~p~ 174 (757)
+++.++||
T Consensus 152 ~~~~~~~~ 159 (165)
T cd02885 152 APEAFTPW 159 (165)
T ss_pred CchhcCHH
Confidence 98999999
No 5
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.93 E-value=9.4e-25 Score=226.84 Aligned_cols=167 Identities=26% Similarity=0.421 Sum_probs=136.6
Q ss_pred ccccccccEEEEcCCCCccccccccccccc------CCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeecccccc
Q 004387 3 ESVVQEEHLDVLTMTGQKTGITKPRSEVHR------VGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHI 76 (757)
Q Consensus 3 ~~~~~~E~~~vvd~~~~~~G~~~~R~~~h~------~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~v 76 (757)
.+.|.+|.++|||++++++|. ++|..+|. .|.+||+++|+|+| ++|+||||||+..|..|||+|+++||||+
T Consensus 17 ~~~~~~e~v~lvDe~d~~~G~-~~r~~~H~~~~~~~~gl~Hra~~v~i~n-~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp 94 (247)
T PLN02552 17 RRLMFEDECILVDENDNVVGH-DSKYNCHLFEKIEPRGLLHRAFSVFLFN-SKYELLLQQRAATKVTFPLVWTNTCCSHP 94 (247)
T ss_pred HhhhhcCeEEEEcCCCCEEee-eEHhhhhccccccCCCceEEEEEEEEEc-CCCeEEEEEecCCCCCCCcceecccCCcc
Confidence 456668999999999999997 78999995 89999999999999 58999999999999999999999999999
Q ss_pred CCCCC-----------------HHHHHHHHHHHHhCCccC---CCceEEEEEEEeeeecC-----CCcccceEEEEEEEE
Q 004387 77 SAGDS-----------------SLISAQRELQEELGINLP---KDAFEFVFTFLQQNVIN-----DGKFINNEFADVYLV 131 (757)
Q Consensus 77 e~GEt-----------------~~eAAiREl~EEtGI~v~---~~~L~~v~~~~~~~~~~-----~g~~~~~ei~~vy~~ 131 (757)
..||+ +.+||+||++|||||.+. ..++..++.+.|..... ++.+.++++.++|+.
T Consensus 95 ~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~ 174 (247)
T PLN02552 95 LYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFI 174 (247)
T ss_pred ccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeEEEEecccccccccCCCccceEEEEEEEE
Confidence 88744 578999999999999853 34577777777654321 244556788888765
Q ss_pred EEeCCCCCccccCCccccccEEEEcHHHHHHHHh-cCCCCcccC
Q 004387 132 TTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA-KDDPSFVPY 174 (757)
Q Consensus 132 ~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~-~~~~~f~p~ 174 (757)
..... ..+.++++|+.+++|++++++.+++. ..+..|+||
T Consensus 175 ~~~~~---~~l~lq~eEV~~~~wvs~~el~~~~~~~~~~~~tpw 215 (247)
T PLN02552 175 RPVRD---VKVNPNPDEVADVKYVNREELKEMMRKESGLKLSPW 215 (247)
T ss_pred EecCC---CcccCCHHHhheEEEEeHHHHHHHHhhcCCcccCHH
Confidence 33222 23588999999999999999999887 456788999
No 6
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.93 E-value=9e-25 Score=218.51 Aligned_cols=173 Identities=19% Similarity=0.146 Sum_probs=136.5
Q ss_pred ccccccEEEEcCCCCcccccccccccccCCceeEEEEEEE--EecCC--CEEEEEEeCCCCCCCCCCeeeccccccCCCC
Q 004387 5 VVQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWI--FAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGD 80 (757)
Q Consensus 5 ~~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hrav~viV--~n~~~--g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GE 80 (757)
.+++|+++|||++++++|. ++|..+|+.|.+|++|++++ .| ++ ++||++||+..|..+||+|+..||||+++||
T Consensus 1 ~~~~E~~~v~d~~~~~~~~-~~r~~~~~~g~~h~~v~~~~~~~~-~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE 78 (180)
T cd03676 1 GWRNELYAVYGPFGEPLFE-IERAASRLFGLVTYGVHLNGYVRD-EDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGE 78 (180)
T ss_pred CCcCcceeeECCCCCEeEE-EEecccccCCceEEEEEEEEEEEc-CCCCeEEEEEeccCCCCCCCCceeeecccCCCCCC
Confidence 3689999999999999996 89999999999999999764 45 34 7899999999999999999877799999999
Q ss_pred CHHHHHHHHHHHHhCCccCCCc-eEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHH
Q 004387 81 SSLISAQRELQEELGINLPKDA-FEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEE 159 (757)
Q Consensus 81 t~~eAAiREl~EEtGI~v~~~~-L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~E 159 (757)
|+.+||+||++||||+++.... +..++.+.+......+ ...+++.++|.+.+..+. ...++++|+.++.|++++|
T Consensus 79 ~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~-~~~~e~~~~f~~~~~~~~---~~~~~~~Ev~~~~~~~~~e 154 (180)
T cd03676 79 GPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAG-GLQPEVEYVYDLELPPDF---IPAPQDGEVESFRLLTIDE 154 (180)
T ss_pred CHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCC-cEeeeEEEEEEEEcCCCC---eeCCCCCcEeEEEEECHHH
Confidence 9999999999999999865322 5555544443321121 235678888887753322 2356788999999999999
Q ss_pred HHHHHhcCCCCcccCCCCCchHHHHHHHHH
Q 004387 160 YKNLLAKDDPSFVPYDVNGGYGQLFNIISQ 189 (757)
Q Consensus 160 L~~~l~~~~~~f~p~~~~~~~~~~f~~l~~ 189 (757)
+.+++.. +.|+|++ .-.+++++.+
T Consensus 155 l~~~l~~--g~~~~~~----~lv~~~~~~~ 178 (180)
T cd03676 155 VLRALKE--GEFKPNC----ALVTLDFLIR 178 (180)
T ss_pred HHHHHHc--CCCCccc----HhHHHHHHhh
Confidence 9999985 5689984 3455777664
No 7
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.92 E-value=2.2e-24 Score=216.64 Aligned_cols=161 Identities=24% Similarity=0.394 Sum_probs=131.1
Q ss_pred cccccEEEEcCCCCccccccccccccc-CCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHH
Q 004387 6 VQEEHLDVLTMTGQKTGITKPRSEVHR-VGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI 84 (757)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~-~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~e 84 (757)
+.+|+|++||++++++|. ++|..+|. .|.+|++++++|++ ++|+|||+||+..+..+||.|++|+||++++|||+++
T Consensus 3 ~~~E~~~~vd~~~~~~g~-~~r~~~~~~~~~~h~av~v~i~~-~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~ 80 (184)
T PRK03759 3 METELVVLLDEQGVPTGT-AEKAAAHTADTPLHLAFSCYLFD-ADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLED 80 (184)
T ss_pred CCceeEEEECCCCCCccc-ccHHHHHhcCCCeeeEEEEEEEc-CCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHH
Confidence 457999999999999996 88999994 89999999999999 5789999999988888999999999999999999999
Q ss_pred HHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 85 SAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 85 AAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
||+||+.||||+++... ...++.+.+....+.+ ...+++.++|.+...+ .+.++++|+.+++|++++++.+++
T Consensus 81 aa~REl~EEtGl~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~vf~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 81 AVIRRCREELGVEITDL-ELVLPDFRYRATDPNG-IVENEVCPVFAARVTS-----ALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred HHHHHHHHHhCCCcccc-ccccceEEEEEecCCC-ceeeEEEEEEEEEECC-----CCCCChhHeeeEEEECHHHHHHHH
Confidence 99999999999986421 1123334333222222 2345677888887642 236677899999999999999999
Q ss_pred hcCCCCcccCC
Q 004387 165 AKDDPSFVPYD 175 (757)
Q Consensus 165 ~~~~~~f~p~~ 175 (757)
..++..|+||.
T Consensus 154 ~~~~~~~~~~l 164 (184)
T PRK03759 154 DATPWAFSPWM 164 (184)
T ss_pred HhCCcccChHH
Confidence 99888999994
No 8
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.91 E-value=5e-24 Score=208.87 Aligned_cols=153 Identities=28% Similarity=0.460 Sum_probs=126.7
Q ss_pred EEEEcCCCCcccccccccccc-cCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHH
Q 004387 11 LDVLTMTGQKTGITKPRSEVH-RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRE 89 (757)
Q Consensus 11 ~~vvd~~~~~~G~~~~R~~~h-~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiRE 89 (757)
++|||++++++|. +.|..+| ..|.+|++++++|++ .+|+|||+||+..+..+||+|++|+||+++.|| .+||+||
T Consensus 1 ~~~~d~~~~~~g~-~~r~~~~~~~g~~h~~v~v~v~~-~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~RE 76 (158)
T TIGR02150 1 VILVDENDNPIGT-ASKAEVHLQETPLHRAFSVFLFN-EEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRR 76 (158)
T ss_pred CEEECCCCCEeee-eeHHHhhhcCCCeEEEEEEEEEc-CCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHH
Confidence 4799999999997 7899999 579999999999998 578999999999988999999999999999999 4999999
Q ss_pred HHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcCCC
Q 004387 90 LQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDP 169 (757)
Q Consensus 90 l~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~~~ 169 (757)
++|||||++....+..++.+.+......+ .+++.++|.+.... .+.++++|+++++|++++++.+++..++.
T Consensus 77 l~EE~Gl~~~~~~l~~~~~~~~~~~~~~g---~~~~~~~f~~~~~~-----~~~~~~~Ev~~~~W~~~~el~~~~~~~~~ 148 (158)
T TIGR02150 77 LREELGIPADDVPLTVLPRFSYRARDAWG---EHELCPVFFARAPV-----PLNPNPEEVAEYRWVSLEELKEILKAPWA 148 (158)
T ss_pred HHHHHCCCccccceEEcceEEEEEecCCC---cEEEEEEEEEecCC-----cccCChhHeeeEEEeCHHHHHHHHhcCcc
Confidence 99999998765444455555544332222 35677888877543 23667789999999999999999998888
Q ss_pred CcccCC
Q 004387 170 SFVPYD 175 (757)
Q Consensus 170 ~f~p~~ 175 (757)
.|+||.
T Consensus 149 ~~~p~~ 154 (158)
T TIGR02150 149 GFSPWF 154 (158)
T ss_pred ccCHhh
Confidence 999983
No 9
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.89 E-value=5.5e-23 Score=196.94 Aligned_cols=162 Identities=27% Similarity=0.415 Sum_probs=143.5
Q ss_pred cccccEEEEcCCCCccccccccccccc-CCc-eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHH
Q 004387 6 VQEEHLDVLTMTGQKTGITKPRSEVHR-VGD-YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSL 83 (757)
Q Consensus 6 ~~~E~~~vvd~~~~~~G~~~~R~~~h~-~g~-~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~ 83 (757)
++.|.+.++|.++.++|. .+|..+|. .+. +|++++++|+| .+|++||+||+..|.+|||.|+++|+||.-+|||..
T Consensus 1 ~~~e~vill~~~d~~~G~-~~k~~~Ht~d~~~LHrAFS~~lFn-e~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~ 78 (185)
T COG1443 1 NMTEDVILLNDDDVPTGT-AEKLAAHTGDTPRLHRAFSSFLFN-ERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNE 78 (185)
T ss_pred CCceeEEEECCCCCcccc-chhhhhhccccHHHHhhhheeEEC-CCCceeeehhhhhcccCcccccccccCCCcCCCchH
Confidence 578999999999999996 89999995 555 69999999999 689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccC-CCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 84 ISAQRELQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 84 eAAiREl~EEtGI~v~-~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
+|++|.+.+|+||... .+.+.++..|.|....++| +.+++++.|+.++..+. +.++++||.+++|++++++.+
T Consensus 79 ~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~~~-~~E~Eic~V~~~~~~~~-----~~~npdEV~~~~wv~~e~l~~ 152 (185)
T COG1443 79 DAARRRLAYELGIEPDQYDKLEILPRFRYRAADPDG-IVENEICPVLAARLDSA-----LDPNPDEVMDYRWVSPEDLKE 152 (185)
T ss_pred HHHHHHHHHHhCCCCcccCccccccceEEeccCCCC-cceeeeeeEEEEeecCC-----CCCChHHhhheeccCHHHHHH
Confidence 9999999999999864 2456777788888765554 67999999999987652 478889999999999999999
Q ss_pred HHhcCCCCcccCC
Q 004387 163 LLAKDDPSFVPYD 175 (757)
Q Consensus 163 ~l~~~~~~f~p~~ 175 (757)
+....+..|+||+
T Consensus 153 ~~~~~~~~fsPW~ 165 (185)
T COG1443 153 MVDATPWAFSPWF 165 (185)
T ss_pred hhcCCceeeChHH
Confidence 9988888899993
No 10
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.87 E-value=3.7e-21 Score=192.58 Aligned_cols=148 Identities=26% Similarity=0.363 Sum_probs=119.2
Q ss_pred CccccccccEEEEcCCCCcccccccccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCC
Q 004387 2 AESVVQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDS 81 (757)
Q Consensus 2 ~~~~~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt 81 (757)
+.+.+..|+|+|||.+++++|. ++|..+|.+++.|+++.++|++ ++|+|||++|+..+..+||.|+.++||++++|||
T Consensus 3 ~~~~~~~e~~~~~d~~~~~~g~-~~~~~~~~~~~~h~~~~v~v~~-~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs 80 (180)
T PRK15393 3 QRRLASTEWVDIVNENNEVIAQ-ASREQMRAQCLRHRATYIVVHD-GMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQ 80 (180)
T ss_pred CCCCCCceEEEEECCCCCEeeE-EEHHHHhhCCCceEEEEEEEEC-CCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCC
Confidence 4567889999999999999998 6899999999999999999998 5789999999988888899998666999999999
Q ss_pred HHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHH
Q 004387 82 SLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (757)
Q Consensus 82 ~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~ 161 (757)
+.+||+||++||||+.+. .+..++.+.+.. . ..+...++|.+.... ...++++|+.+++|++++++.
T Consensus 81 ~~eAA~REL~EEtGl~~~--~~~~~~~~~~~~----~--~~~~~~~~f~~~~~~-----~~~~~~~E~~~~~W~~~~el~ 147 (180)
T PRK15393 81 LLESARREAEEELGIAGV--PFAEHGQFYFED----E--NCRVWGALFSCVSHG-----PFALQEEEVSEVCWMTPEEIT 147 (180)
T ss_pred HHHHHHHHHHHHHCCCCc--cceeceeEEecC----C--CceEEEEEEEEEeCC-----CCCCChHHeeEEEECCHHHHh
Confidence 999999999999999843 344455554421 1 112344566554321 235677899999999999998
Q ss_pred HHH
Q 004387 162 NLL 164 (757)
Q Consensus 162 ~~l 164 (757)
++.
T Consensus 148 ~~~ 150 (180)
T PRK15393 148 ARC 150 (180)
T ss_pred hhh
Confidence 865
No 11
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.85 E-value=1.3e-20 Score=181.64 Aligned_cols=137 Identities=42% Similarity=0.717 Sum_probs=109.9
Q ss_pred eeEEEEEEEEecCC--CEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeee
Q 004387 36 YHRTVNAWIFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQN 113 (757)
Q Consensus 36 ~hrav~viV~n~~~--g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~ 113 (757)
+|++|+|+|+++.+ ++||+++|+..+..+||.|++|+||++++|||+.+||+||++||||+.+....+..++.+.+..
T Consensus 1 ~h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~ 80 (144)
T cd04692 1 WHRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEY 80 (144)
T ss_pred CceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEec
Confidence 69999999999532 7899999999888999999997799999999999999999999999987656677777765533
Q ss_pred ecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcCCCCcccCC
Q 004387 114 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPYD 175 (757)
Q Consensus 114 ~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~~~~f~p~~ 175 (757)
.. .+....+.+.++|.+...... ..+.++++|+.+++|++++++.+++...+..|+||.
T Consensus 81 ~~-~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~ 139 (144)
T cd04692 81 DH-IGKLIDREFHHVYLYELKVPL--EEFTLQKEEVAGVVLIPLDEFAELLEEEDHKYQYYD 139 (144)
T ss_pred cc-cCCCccceEEEEEEEeccCCh--hhcCCChhHhheEEEECHHHHHHHHHcCCCCCCccc
Confidence 21 122223456678888764321 224567789999999999999999999999999995
No 12
>PLN02839 nudix hydrolase
Probab=99.79 E-value=2.5e-18 Score=184.89 Aligned_cols=192 Identities=19% Similarity=0.144 Sum_probs=156.6
Q ss_pred ccccccEEEEcCCC-CcccccccccccccCCceeEEEEEEEEecCC--CEEEEEEeCCCCCCCCCCeeeccccccCCCCC
Q 004387 5 VVQEEHLDVLTMTG-QKTGITKPRSEVHRVGDYHRTVNAWIFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDS 81 (757)
Q Consensus 5 ~~~~E~~~vvd~~~-~~~G~~~~R~~~h~~g~~hrav~viV~n~~~--g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt 81 (757)
.+++|+++|+...+ .+.. .++|+.+..+|+...+||+-.+...+ .++|++||+.+|.+|||+||+.+||++..||+
T Consensus 171 gWRnE~y~V~~~~~~~~l~-~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGes 249 (372)
T PLN02839 171 GIRNELYPVKPSFNAPVFF-SLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGIS 249 (372)
T ss_pred CcccCccccccCCCCcceE-EEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCC
Confidence 48999999997644 4665 48999999999999999998775333 36999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCccC-CCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHH
Q 004387 82 SLISAQRELQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEY 160 (757)
Q Consensus 82 ~~eAAiREl~EEtGI~v~-~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL 160 (757)
+.+|++||+.||+||+.. ...+..+|.+.|......+ ..++..++|.+.++.+.. ..++++||+++.+++++|+
T Consensus 250 p~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g--~~~evly~YDLeLP~df~---P~~qDGEVe~F~Lm~v~EV 324 (372)
T PLN02839 250 CGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYC--FKRDVLFCYDLELPQDFV---PKNQDGEVESFKLIPVAQV 324 (372)
T ss_pred HHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCc--cccCEEEEeeeecCCccc---cCCCccceeEEEEecHHHH
Confidence 999999999999999743 2357788888876543333 356777889998866542 3678899999999999999
Q ss_pred HHHHhcCCCCcccCCCCCchHHHHHHHHHH--hhhhhhhhHHHHHHHHhh
Q 004387 161 KNLLAKDDPSFVPYDVNGGYGQLFNIISQR--YKENTMERSLTLQKQLRR 208 (757)
Q Consensus 161 ~~~l~~~~~~f~p~~~~~~~~~~f~~l~~~--~~~~~~~r~~~L~~rl~r 208 (757)
.+.+.+ .+.|+|.| .-.++|++.++ +++. .+.+.+|..|+++
T Consensus 325 ~~~l~~-~~~fKpn~----aLViiDFLiRhG~Itpe-~p~y~ei~~rlh~ 368 (372)
T PLN02839 325 ANVIRK-TSFFKANC----SLVIIDFLFRHGFIRPE-SSGYLDLYRRLRN 368 (372)
T ss_pred HHHHHc-CCCCCccc----HHHHHHHHHHcCCCCCC-CCCHHHHHHHhhc
Confidence 998875 24689986 35779999998 5555 5789999999986
No 13
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.76 E-value=9.3e-19 Score=170.70 Aligned_cols=160 Identities=30% Similarity=0.539 Sum_probs=137.5
Q ss_pred ccccEEEEcCCCCcccccccccccc-----cCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccC--CC
Q 004387 7 QEEHLDVLTMTGQKTGITKPRSEVH-----RVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHIS--AG 79 (757)
Q Consensus 7 ~~E~~~vvd~~~~~~G~~~~R~~~h-----~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve--~G 79 (757)
+.|.+.+||++++++|. .++..|| ..|..||+++|+++| +++++||+||+..|-+|||.|+.+|++|.- ++
T Consensus 18 l~e~ci~VDenD~~IG~-~tk~~cHl~eni~kglLHRaFSVFlFn-s~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~ 95 (225)
T KOG0142|consen 18 LAENCILVDENDNVIGA-GTKKNCHLMENIEKGLLHRAFSVFLFN-SKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPG 95 (225)
T ss_pred HhhheEeeccccccccc-hhhhhhhcchhHHhhhhhheeeEEEec-CcchHHHhhhccccccccchhhhhhhcCcCCChh
Confidence 45689999999999997 6789999 788999999999999 789999999999999999999999999985 33
Q ss_pred C-------CHHHHHHHHHHHHhCCcc---CCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCcccc
Q 004387 80 D-------SSLISAQRELQEELGINL---PKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEV 149 (757)
Q Consensus 80 E-------t~~eAAiREl~EEtGI~v---~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev 149 (757)
| ....||.|.+.-|+||+. +++++.+++.+.|.... +|.|.+|++.++.++.- +.+ +.++++||
T Consensus 96 el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~s-dg~wGEhEiDYiL~~~~--~~~---~nPnpnEv 169 (225)
T KOG0142|consen 96 ELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPS-DGIWGEHEIDYILFLVK--DVT---LNPNPNEV 169 (225)
T ss_pred hhccCchHHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCC-CCCcccceeeEEEEEec--cCC---CCCChhhh
Confidence 2 356899999999999983 45689999999997654 46788999987777654 332 47788999
Q ss_pred ccEEEEcHHHHHHHHhcCCCCcccC
Q 004387 150 SAVKYIAYEEYKNLLAKDDPSFVPY 174 (757)
Q Consensus 150 ~e~~Wvs~~EL~~~l~~~~~~f~p~ 174 (757)
.+++|++.+||.+++......|+||
T Consensus 170 ~e~ryvs~eelkel~~~~~~~~TPW 194 (225)
T KOG0142|consen 170 SEIRYVSREELKELVAKASAGFTPW 194 (225)
T ss_pred hHhheecHHHHHHHHhccccCCChH
Confidence 9999999999999998877789999
No 14
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.5e-17 Score=156.57 Aligned_cols=122 Identities=37% Similarity=0.669 Sum_probs=92.4
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
++|.+++++ .+|+|||+||+..+..+||.|++|+||++++|||+ +||+||++||||+.+....+..++.+.+...
T Consensus 1 ~~v~v~~~~-~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~--- 75 (127)
T cd04693 1 LVVHVCIFN-SKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE--- 75 (127)
T ss_pred CeEEEEEEe-CCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---
Confidence 367888888 57899999999888889999999889999999999 9999999999999976556666666544221
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcCCCCcccC
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVPY 174 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~~~~f~p~ 174 (757)
+ +...++|.+.... ....++++|+.+++|++++++.+++.. +.++||
T Consensus 76 ~----~~~~~~~~~~~~~----~~~~~~~~E~~~~~w~~~~el~~~~~~--~~~~~~ 122 (127)
T cd04693 76 G----FDDYYLFYADVEI----GKLILQKEEVDEVKFVSKDEIDGLIGH--GEFTPY 122 (127)
T ss_pred C----eEEEEEEEecCcc----cccccCHHHhhhEEEeCHHHHHHHHhc--CCcccc
Confidence 1 1222334333221 123567789999999999999999876 446776
No 15
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=3e-17 Score=154.53 Aligned_cols=120 Identities=31% Similarity=0.498 Sum_probs=94.3
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
++++|++++ .+|+|||++|+..+..+||+|++|+||++++||++.+||+||++||||+++. .+..++.+.+... .
T Consensus 1 ~~~~v~i~~-~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~--~l~~~~~~~~~~~--~ 75 (126)
T cd04697 1 RATYIFVFN-SEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGV--QLTPLGLFYYDTD--G 75 (126)
T ss_pred CeEEEEEEc-CCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCcc--ccEEeeEEEecCC--C
Confidence 478999999 5889999999988888899999977999999999999999999999999864 5666676655321 1
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcCCCCccc
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVP 173 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~~~~f~p 173 (757)
.....++|.+..... +.++++|+.+++|++++++.+++..+ .|.|
T Consensus 76 ----~~~~~~~f~~~~~~~-----~~~~~~E~~~~~w~~~~el~~~~~~~--~~~~ 120 (126)
T cd04697 76 ----NRVWGKVFSCVYDGP-----LKLQEEEVEEITWLSINEILQFKEGE--NITP 120 (126)
T ss_pred ----ceEEEEEEEEEECCC-----CCCCHhHhhheEEcCHHHHHHHhhcC--cccC
Confidence 233456777765322 35677899999999999999987653 3555
No 16
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=3.6e-16 Score=146.13 Aligned_cols=113 Identities=27% Similarity=0.418 Sum_probs=86.1
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCC-CCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeec
Q 004387 37 HRTVNAWIFAESTQELLLQRRADF-KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~-k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~ 115 (757)
|.++.+++++ +|+|||++|+.. +..+||.|++| ||+++.|||+++||+||++||||+++....+.....+...
T Consensus 1 ~~v~~~~~~~--~g~vLl~~r~~~~~~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~--- 74 (122)
T cd04682 1 SGVALALLIG--DGRLLLQLRDDKPGIPYPGHWDLP-GGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSA--- 74 (122)
T ss_pred CceEEEEEEc--CCEEEEEEccCCCCCCCCCcEeCC-CccccCCCCHHHHHHHHHHHHhCCcccccccceeEecccC---
Confidence 4567777776 489999999876 67899999998 9999999999999999999999999754333333333221
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
. .....++|.+....... ...+++|+.+++|++++++.+.
T Consensus 75 -~----~~~~~~~f~~~~~~~~~---~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 75 -S----PPGTEHVFVVPLTARED---AILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred -C----CCceEEEEEEEEecCCC---ccccCchhheeecccHHHHhhc
Confidence 1 23467888887754431 2566789999999999999765
No 17
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.66 E-value=1.4e-15 Score=149.10 Aligned_cols=119 Identities=15% Similarity=0.232 Sum_probs=86.0
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEE--eeee
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--QQNV 114 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~--~~~~ 114 (757)
+.+|.++|++ .+++|||+||+.. ..+|.|++| ||++++|||+.+||+||++||||+.+.......++.+. +...
T Consensus 17 ~~~v~~vI~~-~~g~VLL~kR~~~--~~~g~W~lP-GG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~ 92 (159)
T PRK15434 17 LISLDFIVEN-SRGEFLLGKRTNR--PAQGYWFVP-GGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDN 92 (159)
T ss_pred eEEEEEEEEC-CCCEEEEEEccCC--CCCCcEECC-ceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccc
Confidence 4588898988 4689999999853 468999998 99999999999999999999999986432223333222 2211
Q ss_pred cCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 115 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 115 ~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.++..+..+.+..+|.++...+ .+.++++|+.+++|++++++.+.
T Consensus 93 ~~~~~~~~~~i~~~f~~~~~~g----~~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 93 FSGTDFTTHYVVLGFRLRVAEE----DLLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred cCCCccceEEEEEEEEEEecCC----cccCChHHeeEEEEEeHHHhhhc
Confidence 1111222356777888876543 23556679999999999999764
No 18
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.65 E-value=1.9e-15 Score=145.89 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=86.0
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeee--c
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV--I 115 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~--~ 115 (757)
.+|+++|+| .+|+|||+||... .++|.|.+| ||+++.|||+.+||+||++||||+.+....++.++.+.+... .
T Consensus 13 v~v~~vI~~-~~g~vLl~~R~~~--p~~g~w~lP-GG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~ 88 (144)
T cd03430 13 VSIDLIVEN-EDGQYLLGKRTNR--PAQGYWFVP-GGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNF 88 (144)
T ss_pred EEEEEEEEe-CCCeEEEEEccCC--CCCCcEECC-CceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEecccc
Confidence 478899998 4789999999763 468999998 999999999999999999999999976553344444432211 1
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.......+.+..+|.+...... +..+++|+.+++|++++++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 89 FGDDFSTHYVVLGYVLKLSSNE----LLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred ccCCCccEEEEEEEEEEEcCCc----ccCCchhccEeEEecHHHHhcC
Confidence 1111123556677777664332 2456689999999999999764
No 19
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.65 E-value=1.2e-15 Score=146.44 Aligned_cols=121 Identities=23% Similarity=0.372 Sum_probs=79.2
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEE--e-e
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL--Q-Q 112 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~--~-~ 112 (757)
.++++.|.+++ .+|+|||+||+..+..+||.|++| ||++++|||+.+||+||++||||+.+....+... .+. . .
T Consensus 2 ~~r~~~~~ii~-~~~~vLl~~R~~~~~~~~g~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~-~~~~~~~~ 78 (141)
T PRK15472 2 RQRTIVCPLIQ-NDGAYLLCKMADDRGVFPGQWALS-GGGVEPGERIEEALRREIREELGEQLLLTEITPW-TFRDDIRT 78 (141)
T ss_pred cceeEEEEEEe-cCCEEEEEEecccCCCCCCceeCC-cccCCCCCCHHHHHHHHHHHHHCCceeeeeeccc-ccccccee
Confidence 35678888887 478999999998788899999999 9999999999999999999999998643222110 010 0 0
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 113 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 113 ~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
...+.+. ...+.++|.+....... ..+.+ .+|+.+++|++++++.++
T Consensus 79 ~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~-~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 79 KTYADGR--KEEIYMIYLIFDCVSAN-RDVKI-NEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred EEecCCC--ceeEEEEEEEEEeecCC-CcccC-ChhhheEEEccHHHhccc
Confidence 0111221 12233333222111111 11233 379999999999999764
No 20
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3.9e-15 Score=139.54 Aligned_cols=115 Identities=19% Similarity=0.265 Sum_probs=84.3
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
+.+|+++|++ .++++||++|... ..+|.|++| ||++++|||+.+||+||++||||+.+... ..++.+.+.....
T Consensus 2 ~~~~~~~i~~-~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~eaa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~ 75 (125)
T cd04679 2 RVGCGAAILR-DDGKLLLVKRLRA--PEAGHWGIP-GGKVDWMEAVEDAVVREIEEETGLSIHST--RLLCVVDHIIEEP 75 (125)
T ss_pred ceEEEEEEEC-CCCEEEEEEecCC--CCCCeEeCC-eeeccCCCCHHHHHHHHHHHHHCCCcccc--eEEEEEeecccCC
Confidence 4678899998 4689999999753 347999998 99999999999999999999999997543 3444333221111
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
..+.+..+|.+......+ ...+++|+.+++|++++++.+.+
T Consensus 76 ----~~~~~~~~f~~~~~~~~~---~~~~~~E~~~~~W~~~~~l~~~l 116 (125)
T cd04679 76 ----PQHWVAPVYLAENFSGEP---RLMEPDKLLELGWFALDALPQPL 116 (125)
T ss_pred ----CCeEEEEEEEEeecCCcc---ccCCCccccEEEEeCHHHCCchh
Confidence 135567778887644322 13455799999999999996543
No 21
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=4e-15 Score=138.23 Aligned_cols=114 Identities=23% Similarity=0.445 Sum_probs=83.2
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+|.++|++ +|+|||+||...+ .++|.|++| ||++++|||+.+||+||++||||+.+....+..++.+.... ..
T Consensus 2 ~v~~vi~~--~~~vLL~~r~~~~-~~~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~--~~- 74 (120)
T cd04683 2 AVYVLLRR--DDEVLLQRRANTG-YMDGQWALP-AGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRT--ED- 74 (120)
T ss_pred cEEEEEEE--CCEEEEEEccCCC-CCCCeEeCC-ccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecC--CC-
Confidence 46777776 6899999997653 458999998 99999999999999999999999987655566666554322 11
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
..+.+..+|.+......+ ...+++|+.+++|++++++...+
T Consensus 75 --~~~~~~~~f~~~~~~~~~---~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 75 --IESRIGLFFTVRRWSGEP---RNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred --CceEEEEEEEEEeecCcc---ccCCCCcEeeEEEEchHHCcchh
Confidence 124455566665433322 13355789999999999997654
No 22
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.61 E-value=4.6e-15 Score=139.22 Aligned_cols=122 Identities=27% Similarity=0.473 Sum_probs=91.1
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeec
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~ 115 (757)
+|++|+++|++ .++++||.||...+...+|.|.+| ||++++|||+.+||+||+.||||+.+.. ....+.+.+....
T Consensus 1 ~~~~v~~ii~~-~~~~vLl~~r~~~~~~~~~~~~~p-gG~i~~~E~~~~aa~REl~EE~g~~~~~--~~~~~~~~~~~~~ 76 (134)
T PF00293_consen 1 WRRAVGVIIFN-EDGKVLLIKRSRSPITFPGYWELP-GGGIEPGESPEEAARRELKEETGLDVSP--LELLGLFSYPSPS 76 (134)
T ss_dssp EEEEEEEEEEE-TTTEEEEEEESTTSSSSTTEEESS-EEEECTTSHHHHHHHHHHHHHHSEEEEE--EEEEEEEEEEETT
T ss_pred CCCEEEEEEEe-CCcEEEEEEecCCCCCCCCeEecc-eeeEEcCCchhhhHHhhhhhcccceecc--cccceeeeecccC
Confidence 58999999999 467999999998766678999998 9999999999999999999999999633 3334444433321
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhc
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAK 166 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~ 166 (757)
..+ .....++|.+.+..... ....+..|+.+++|++++++.++...
T Consensus 77 ~~~---~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~W~~~~el~~~~~~ 122 (134)
T PF00293_consen 77 GDP---EGEIVIFFIAELPSEQS--EIQPQDEEISEVKWVPPDELLELLLN 122 (134)
T ss_dssp TES---SEEEEEEEEEEEEEEES--ECHTTTTTEEEEEEEEHHHHHHHHHT
T ss_pred CCc---ccEEEEEEEEEEeCCcc--ccCCCCccEEEEEEEEHHHhhhchhC
Confidence 111 23456667776644331 23455569999999999999987653
No 23
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.61 E-value=1.1e-14 Score=136.16 Aligned_cols=116 Identities=18% Similarity=0.216 Sum_probs=83.9
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
++.++|++ ++++||++|...+ ++|.|.+| ||+++.|||+.+||+||++||||+.+.. +..++.+.+....+.+
T Consensus 2 ~~~~ii~~--~~~vLl~~~~~~~--~~~~w~lP-gG~ve~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~ 74 (128)
T cd04684 2 GAYAVIPR--DGKLLLIQKNGGP--YEGRWDLP-GGGIEPGESPEEALHREVLEETGLTVEI--GRRLGSASRYFYSPDG 74 (128)
T ss_pred eeEEEEEe--CCEEEEEEccCCC--CCCeEECC-CcccCCCCCHHHHHHHHHHHHhCcEeec--ceeeeEEEEEEECCCC
Confidence 46677777 4899999998754 68999998 9999999999999999999999998654 4445544332222222
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
....+.+.++|.+........ .....+|+.+++|++++++.+.
T Consensus 75 ~~~~~~~~~~f~~~~~~~~~~--~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 75 DYDAHHLCVFYDARVVGGALP--VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred CeeccEEEEEEEEEEecCccc--cCCCCCCceeeEEECHHHhhcc
Confidence 112356778888887554321 1344578899999999999754
No 24
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=1e-14 Score=135.38 Aligned_cols=113 Identities=21% Similarity=0.288 Sum_probs=81.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+++++|++ ++++||++|... .++|.|.+| ||++++|||+++||+||++||||+++.. +..++.+.+....+.+
T Consensus 2 ~v~~ii~~--~~~vLl~~r~~~--~~~~~w~~P-gG~ie~gE~~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~~~ 74 (122)
T cd04673 2 AVGAVVFR--GGRVLLVRRANP--PDAGLWSFP-GGKVELGETLEQAALRELLEETGLEAEV--GRLLTVVDVIERDAAG 74 (122)
T ss_pred cEEEEEEE--CCEEEEEEEcCC--CCCCeEECC-CcccCCCCCHHHHHHHHHHHhhCcEeee--ceeEEEEEEeeccCCC
Confidence 46777777 579999999753 468999998 9999999999999999999999998653 3444444433222222
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
....+.+.++|.+....+. ..+++|+.+++|++++++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-----~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 75 RVEFHYVLIDFLCRYLGGE-----PVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred ccceEEEEEEEEEEeCCCc-----ccCCcccceeEEECHHHHhhC
Confidence 2223556677777654332 234578999999999999764
No 25
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.60 E-value=6.6e-15 Score=144.17 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=86.2
Q ss_pred eEEEEEEEEecC-CCEEEEEEeCCCCCCCCCCeeeccccccCCC-CCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeee
Q 004387 37 HRTVNAWIFAES-TQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 114 (757)
Q Consensus 37 hrav~viV~n~~-~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~G-Et~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~ 114 (757)
|.+|.+++.+.. +++|||+||+..+..+||.|++| ||++++| ||+.+||+||++||||+++. .+..++.+.....
T Consensus 2 ~~av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lP-GG~ve~gdEs~~eaa~REl~EEtGl~~~--~~~~l~~~~~~~~ 78 (157)
T cd03426 2 RAAVLVLLVEREGELRVLLTKRASHLRSHPGQVAFP-GGKVDPGDEDPVATALREAEEEIGLPPD--SVEVLGRLPPYYT 78 (157)
T ss_pred ceEEEEEEEeCCCceEEEEEEcccccccCCCcEECC-CCCcCCCcCCHHHHHHHHHHHHhCCCcc--ceEEEEECCCccc
Confidence 567888888743 25899999998877789999998 9999999 99999999999999999864 3555554432111
Q ss_pred cCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 115 INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 115 ~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
. ....+++|.+....+. .+.++++|+.+++|++++++.+.
T Consensus 79 ~------~~~~v~~~~~~~~~~~---~~~~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 79 R------SGFVVTPVVGLVPPPL---PLVLNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred c------CCCEEEEEEEEECCCC---CCCCCHHHhheeEEEcHHHHhCc
Confidence 1 1224556666654321 24677789999999999999764
No 26
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.60 E-value=1.7e-14 Score=138.88 Aligned_cols=124 Identities=24% Similarity=0.356 Sum_probs=90.2
Q ss_pred cccCCceeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEE
Q 004387 30 VHRVGDYHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF 109 (757)
Q Consensus 30 ~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~ 109 (757)
-|+....-++++++|++ .++++||++|... ..+|.|++| ||++++|||+++||+||++||||+++.. +..++.+
T Consensus 6 ~~~~~~~~~av~~vv~~-~~~~vLL~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~~~~~ 79 (142)
T cd04700 6 RHHVEVEARAAGAVILN-ERNDVLLVQEKGG--PKKGLWHIP-SGAVEDGEFPQDAAVREACEETGLRVRP--VKFLGTY 79 (142)
T ss_pred ccCcceeeeeEEEEEEe-CCCcEEEEEEcCC--CCCCeEECC-ceecCCCCCHHHHHHHHHHHhhCceeec--cEEEEEE
Confidence 35566677899999998 5778999887653 357999999 9999999999999999999999998653 4555554
Q ss_pred EeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 110 LQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 110 ~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
.+.. +.+ .....++|.+....... . ....+|+.+++|++++++.+++..+
T Consensus 80 ~~~~--~~~---~~~~~~~f~~~~~~~~~--~-~~~~~E~~~~~w~~~~el~~~~~~g 129 (142)
T cd04700 80 LGRF--DDG---VLVLRHVWLAEPEGQTL--A-PKFTDEIAEASFFSREDVAQLYAQG 129 (142)
T ss_pred EEEc--CCC---cEEEEEEEEEEecCCcc--c-cCCCCCEEEEEEECHHHhhhccccc
Confidence 4322 222 23456778777643211 1 1223799999999999999887653
No 27
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.6e-14 Score=139.34 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=86.6
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCc--eEEEEEEE--eee
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDA--FEFVFTFL--QQN 113 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~--L~~v~~~~--~~~ 113 (757)
.+|++++++ .+++|||+||+..+..+||+|++| |||+++||++.+||+||+.||+|+.+.... ++.++.+. +..
T Consensus 2 ~~v~viv~~-~~~~vLl~rr~~~~~~~~g~w~~P-gG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~ 79 (143)
T cd04694 2 VGVAVLLQS-SDQKLLLTRRASSLRIFPNVWVPP-GGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPP 79 (143)
T ss_pred cEEEEEEEc-CCCEEEEEEECCCCCCCCCeEECc-ccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccc
Confidence 368888888 578999999998777899999998 999999999999999999999999865321 24444332 221
Q ss_pred ecCCCcccceEEEEEEEEEEeCCC---CCccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 114 VINDGKFINNEFADVYLVTTLNPI---PLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 114 ~~~~g~~~~~ei~~vy~~~~~~~~---~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
..+.+ ........+|++...... ....+.++++|+.+++|++++++.+.+...
T Consensus 80 ~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~~~~ 135 (143)
T cd04694 80 LLSRG-LPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVVSAE 135 (143)
T ss_pred ccCCC-cccceeEEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHHHhh
Confidence 11111 111122333333222111 111235677899999999999999887643
No 28
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.59 E-value=1.3e-14 Score=136.60 Aligned_cols=122 Identities=19% Similarity=0.327 Sum_probs=86.9
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
+.+++++|++ .+|+|||++|... .++|.|.+| ||+++.|||+.+||+||++||||+++.. +..++.+.... .
T Consensus 2 ~~~v~~ii~~-~~~~iLl~~r~~~--~~~~~w~~P-GG~ve~gEt~~~Aa~REl~EE~Gl~~~~--~~~~~~~~~~~--~ 73 (129)
T cd04678 2 RVGVGVFVLN-PKGKVLLGKRKGS--HGAGTWALP-GGHLEFGESFEECAAREVLEETGLHIEN--VQFLTVTNDVF--E 73 (129)
T ss_pred ceEEEEEEEC-CCCeEEEEeccCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCcccc--eEEEEEEeEEe--C
Confidence 4578999998 4689999999864 468999998 9999999999999999999999998643 44444333211 1
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcCCCCccc
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKDDPSFVP 173 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~~~~f~p 173 (757)
.. ..+.+..+|.+....+... ....+++|+.+++|++++++.++ +..|+|
T Consensus 74 ~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~~----~~~~~~ 123 (129)
T cd04678 74 EE--GKHYVTIFVKAEVDDGEAE-PNKMEPEKCEGWEWFDWEELPSV----DPLFLP 123 (129)
T ss_pred CC--CcEEEEEEEEEEeCCCCcc-cCCCCCceeCceEEeCHHHCCCc----chhhHH
Confidence 11 1345667777776543221 01125678999999999999764 345555
No 29
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.58 E-value=3.3e-14 Score=137.58 Aligned_cols=121 Identities=20% Similarity=0.346 Sum_probs=82.7
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEE----EEe
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFT----FLQ 111 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~----~~~ 111 (757)
.|.++++++++ .++++||+||+..+ |.|++| ||++++||++.+||+||++||||+.+.. +..++. +.|
T Consensus 2 ~~~~v~~ii~~-~~~~vLL~~r~~~~----~~W~~P-gG~~e~gE~~~~aA~REv~EEtGl~~~~--~~~l~~~~~~~~y 73 (147)
T cd03671 2 YRPNVGVVLFN-EDGKVFVGRRIDTP----GAWQFP-QGGIDEGEDPEQAALRELEEETGLDPDS--VEIIAEIPDWLRY 73 (147)
T ss_pred CCceEEEEEEe-CCCEEEEEEEcCCC----CCEECC-cCCCCCCcCHHHHHHHHHHHHHCCCcCc--eEEEEEcCCeeEe
Confidence 35688999998 47899999998753 899998 9999999999999999999999998654 333332 222
Q ss_pred eee--cCCCcc---cceEEEEEEEEEEeCCCCCccccC-CccccccEEEEcHHHHHHHH
Q 004387 112 QNV--INDGKF---INNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 112 ~~~--~~~g~~---~~~ei~~vy~~~~~~~~~~~~i~~-~~~Ev~e~~Wvs~~EL~~~l 164 (757)
... ...+.+ ......++|.+.+........+.. .++|+.+++|++++++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~ 132 (147)
T cd03671 74 DLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLI 132 (147)
T ss_pred eChhhhhccccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhc
Confidence 211 000101 013345677776654211111223 25799999999999998764
No 30
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.9e-14 Score=134.99 Aligned_cols=112 Identities=23% Similarity=0.382 Sum_probs=78.2
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
.+++++|++ .+|+|||+||.. ++|.|.+| ||+++.|||+.+||+||++||||+++....+..+..+.+......
T Consensus 3 ~~v~~~i~~-~~~~iLL~r~~~----~~~~w~lP-GG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~ 76 (125)
T cd04696 3 VTVGALIYA-PDGRILLVRTTK----WRGLWGVP-GGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHK 76 (125)
T ss_pred cEEEEEEEC-CCCCEEEEEccC----CCCcEeCC-ceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCC
Confidence 367888888 578999998753 47999998 999999999999999999999999875433332222222111111
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
..+.+...|.+..... .+.. .+|+.+++|++++++.++
T Consensus 77 ---~~~~~~~~~~~~~~~~----~~~~-~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 77 ---PAHFVLFDFFARTDGT----EVTP-NEEIVEWEWVTPEEALDY 114 (125)
T ss_pred ---ccEEEEEEEEEEecCC----cccC-CcccceeEEECHHHHhcC
Confidence 1344556676665332 1233 368999999999999663
No 31
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.6e-14 Score=136.03 Aligned_cols=111 Identities=19% Similarity=0.348 Sum_probs=80.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+|.++|++ +++++||++|...+ ++|.|++| ||+++.|||+.+||.||++||||+++. .+..++.+.......
T Consensus 3 av~~~i~~-~~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~--~~~~~~~~~~~~~~~-- 74 (130)
T cd04681 3 AVGVLILN-EDGELLVVRRAREP--GKGTLDLP-GGFVDPGESAEEALIREIREETGLKVT--ELSYLFSLPNTYPYG-- 74 (130)
T ss_pred eEEEEEEc-CCCcEEEEEecCCC--CCCcEeCC-ceeecCCCCHHHHHHHHHHHHhCCccc--ceeEEEeecceeeeC--
Confidence 68888888 57899999997653 58999998 999999999999999999999999864 355555543222111
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~ 161 (757)
+...+.+..+|.+.+.... ...+.+|+.+++|++++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 75 GMEYDTLDLFFVCQVDDKP----IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred CceeEEEEEEEEEEeCCCC----CcCChHHhheeEEecHHHCC
Confidence 1222344455666654322 24556799999999999983
No 32
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=2.3e-14 Score=133.23 Aligned_cols=110 Identities=26% Similarity=0.456 Sum_probs=80.1
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
|.++++ +++ +++|||+||...+..++|.|++| ||++++|||+.+||+||++||||+++. .+..++.+.+.
T Consensus 1 ~~v~~v-i~~--~~~vLL~rR~~~~~~~~g~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~--~~~~l~~~~~~---- 70 (117)
T cd04691 1 HGVVGV-LFS--DDKVLLERRSLTKNADPGKLNIP-GGHIEAGESQEEALLREVQEELGVDPL--SYTYLCSLYHP---- 70 (117)
T ss_pred CeEEEE-EEE--CCEEEEEEeCCCCCCCCCeEECc-ceeecCCCCHHHHHHHHHHHHHCCCcc--cceEEEEEecc----
Confidence 334444 445 48999999987766689999998 999999999999999999999999852 34555544331
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
.+ .....++|.+....+. +..+|+.+++|++++++...+.
T Consensus 71 ~~---~~~~~~~~~~~~~~~~------~~~~E~~~~~W~~~~~l~~~~~ 110 (117)
T cd04691 71 TS---ELQLLHYYVVTFWQGE------IPAQEAAEVHWMTANDIVLASE 110 (117)
T ss_pred CC---CeEEEEEEEEEEecCC------CCcccccccEEcCHHHcchhhh
Confidence 11 1345667777654332 2337999999999999987653
No 33
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.58 E-value=2.7e-14 Score=135.94 Aligned_cols=118 Identities=24% Similarity=0.298 Sum_probs=89.0
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
|++|.+++++ .++++||++|...+ ..++.|++| ||+++.|||+.+||+||++||||+.+. .+..++.+.+..
T Consensus 2 ~~~v~v~~~~-~~~~iLl~~~~~~~-~~~~~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~--~~~~~~~~~~~~--- 73 (137)
T cd03424 2 PDAVAVLPYD-DDGKVVLVRQYRPP-VGGWLLELP-AGLIDPGEDPEEAARRELEEETGYEAG--DLEKLGSFYPSP--- 73 (137)
T ss_pred CCEEEEEEEc-CCCeEEEEEeeecC-CCCEEEEeC-CccCCCCCCHHHHHHHHHHHHHCCCcc--ceEEEeeEecCC---
Confidence 6789999999 46899998775442 357899998 999999999999999999999999864 456666554321
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
+ ..+...++|.+....... ....+++|+.+++|++++++.+.+..+
T Consensus 74 -~--~~~~~~~~~~~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~~~~~ 119 (137)
T cd03424 74 -G--FSDERIHLFLAEDLSPGE--EGLLDEGEDIEVVLVPLDEALELLADG 119 (137)
T ss_pred -c--ccCccEEEEEEEcccccc--cCCCCCCCeeEEEEecHHHHHHHHHcC
Confidence 1 123356777776644321 135667899999999999999988753
No 34
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=1.8e-14 Score=135.74 Aligned_cols=115 Identities=23% Similarity=0.284 Sum_probs=82.6
Q ss_pred EEEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEe--ee
Q 004387 38 RTVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ--QN 113 (757)
Q Consensus 38 rav~viV~n~~--~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~--~~ 113 (757)
|.+.+++++ . ++++||+||+.. ++|.|++| ||+++.|||+.+||+||++||||+.+.. +..+..... ..
T Consensus 2 ~~~~v~~~~-~~~~~~vLL~~r~~~---~~~~w~~P-gG~ve~~Es~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~~~~~ 74 (129)
T cd04664 2 RSVLVVPYR-LTGEGRVLLLRRSDK---YAGFWQSV-TGGIEDGESPAEAARREVAEETGLDPER--LTLLDRGASIAFV 74 (129)
T ss_pred cEEEEEEEE-eCCCCEEEEEEeCCC---CCCccccc-CcccCCCCCHHHHHHHHHHHHHCCChhh--eEEEeeccccccc
Confidence 578888888 5 679999999875 78999998 9999999999999999999999998642 333332210 00
Q ss_pred ecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 114 VINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 114 ~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
.....+ .+...++|.+.+.... ....++|+.+++|++++++.+++.
T Consensus 75 ~~~~~~--~~~~~~~f~~~~~~~~----~~~~~~E~~~~~W~~~~e~~~~~~ 120 (129)
T cd04664 75 EFTDNG--RVWTEHPFAFHLPSDA----VVTLDWEHDAFEWVPPEEAAALLL 120 (129)
T ss_pred ccCCCc--eEEEEeEEEEEcCCCC----cccCCccccccEecCHHHHHHHHc
Confidence 111111 2456678888764432 133457899999999999987653
No 35
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=4e-14 Score=133.37 Aligned_cols=120 Identities=17% Similarity=0.230 Sum_probs=81.3
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
.++.++|++ +++|||+||... .++.|.+| ||+++.|||+.+||+||+.||||+.+...++..+..+........
T Consensus 2 ~~a~~iv~~--~~~vLl~~r~~~---~~~~~~lP-GG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd04687 2 NSAKAVIIK--NDKILLIKHHDD---GGVWYILP-GGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSE 75 (128)
T ss_pred cEEEEEEEE--CCEEEEEEEEcC---CCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCcccc
Confidence 356677776 689999998643 24789998 999999999999999999999999986655555544432210111
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.....+.+.++|.+....+.........++|..+++|++++++.++
T Consensus 76 ~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 76 LPGHFHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred CCCceeEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 1112466778888887544321000112245568999999999654
No 36
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.56 E-value=4.1e-14 Score=136.83 Aligned_cols=116 Identities=20% Similarity=0.314 Sum_probs=81.2
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEE-----EEE
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF-----TFL 110 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~-----~~~ 110 (757)
.+.+|.+++++ .+|+|||+||... ||.|++| ||++++|||+.+||+||++||||+.+....+..+. .+.
T Consensus 6 ~~~~v~~vi~~-~~~~vLl~~r~~~----~~~W~lP-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~ 79 (148)
T PRK09438 6 RPVSVLVVIYT-PDLGVLMLQRADD----PDFWQSV-TGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYE 79 (148)
T ss_pred CceEEEEEEEe-CCCeEEEEEecCC----CCcEeCC-cccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccc
Confidence 34578888888 4789999988642 6899998 99999999999999999999999987333333221 110
Q ss_pred ee----eecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 111 QQ----NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 111 ~~----~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
+. .....+ ..+...++|.+...... .+..+|+.+++|++++++.++.
T Consensus 80 ~~~~~~~~~~~~--~~~~~~~~f~~~~~~~~-----~~~~~E~~~~~W~~~~e~~~~~ 130 (148)
T PRK09438 80 IFPHWRHRYAPG--VTRNTEHWFCLALPHER-----PVVLTEHLAYQWLDAREAAALT 130 (148)
T ss_pred cchhhhhccccc--cCCceeEEEEEecCCCC-----ccccCcccceeeCCHHHHHHHh
Confidence 00 000111 13456788888754321 2334599999999999998864
No 37
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.55 E-value=5.6e-14 Score=134.48 Aligned_cols=114 Identities=24% Similarity=0.291 Sum_probs=78.2
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEE-----EEEe
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF-----TFLQ 111 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~-----~~~~ 111 (757)
|.++++++++..+++|||+||.. .|.|.+| ||++++|||+.+||+||++||||+.+.. +...+ .+..
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~-----~~~w~lP-gG~ve~gE~~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~~ 73 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK-----LGSWLQP-GGHIDPDESLLEAALRELREETGIELLG--LRPLSVLVDLDVHP 73 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC-----CCcEECC-ceecCCCCCHHHHHHHHHHHHHCCCccc--ceeccccccceeEe
Confidence 88999999994228999998865 4899998 9999999999999999999999998643 22221 1111
Q ss_pred e-eecCCCcccceEEEEEEEEEEeCCCCCcccc-CCccccccEEEEcHHHHHH
Q 004387 112 Q-NVINDGKFINNEFADVYLVTTLNPIPLEAFT-LQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 112 ~-~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~-~~~~Ev~e~~Wvs~~EL~~ 162 (757)
. .....+....+.+..+|.+....... . .+++|+.+++|++++++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~----~~~~~~E~~~~~W~~~~el~~ 122 (138)
T cd03674 74 IDGHPKRGVPGHLHLDLRFLAVAPADDV----APPKSDESDAVRWFPLDELAS 122 (138)
T ss_pred ecCCCCCCCCCcEEEEEEEEEEccCccc----cCCCCCcccccEEEcHHHhhh
Confidence 0 00000000122345667777543321 2 3667999999999999965
No 38
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.54 E-value=7.2e-14 Score=131.19 Aligned_cols=113 Identities=22% Similarity=0.256 Sum_probs=81.1
Q ss_pred EEEEEEEEecCC--CEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeec
Q 004387 38 RTVNAWIFAEST--QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (757)
Q Consensus 38 rav~viV~n~~~--g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~ 115 (757)
.++++++++..+ ++|||++|... |.|.+| ||++++|||+.+||.||++||||+.+.. +..++.+.+....
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~-----~~w~~P-gG~v~~gEs~~~aa~REl~EEtGl~~~~--~~~~~~~~~~~~~ 73 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRG-----DDWSLP-KGKLEPGETPPEAAVREVEEETGIRAEV--GDPLGTIRYWFSS 73 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCC-----CcccCC-CCccCCCCCHHHHHHHHHhhhhCCceEe--cceEEEEEEeccC
Confidence 356777777422 78999998653 899998 9999999999999999999999998653 3455555443222
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccC-CccccccEEEEcHHHHHHHH
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~-~~~Ev~e~~Wvs~~EL~~~l 164 (757)
+.+ ..+...++|.+....... .. +++|+.+++|++++++.+.+
T Consensus 74 ~~~--~~~~~~~~~~~~~~~~~~----~~~~~~E~~~~~W~~~~el~~~~ 117 (131)
T cd03673 74 SGK--RVHKTVHWWLMRALGGEF----TPQPDEEVDEVRWLPPDEARDRL 117 (131)
T ss_pred CCC--CcceEEEEEEEEEcCCCc----ccCCCCcEEEEEEcCHHHHHHHc
Confidence 111 234566777776644321 32 56799999999999998754
No 39
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=6.6e-14 Score=132.03 Aligned_cols=115 Identities=24% Similarity=0.409 Sum_probs=78.6
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEee--e
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQ--N 113 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~--~ 113 (757)
.+.++++++++ .++++||++|+.. |.|++| ||++++|||+.+||+||++||||+.+.. +..++.+... .
T Consensus 6 ~~~~~~~~v~~-~~~~vLL~~r~~~-----~~w~~P-gG~v~~gEt~~~aa~REl~EE~Gi~~~~--~~~~~~~~~~~~~ 76 (132)
T cd04677 6 ILVGAGVILLN-EQGEVLLQKRSDT-----GDWGLP-GGAMELGESLEETARRELKEETGLEVEE--LELLGVYSGKEFY 76 (132)
T ss_pred cccceEEEEEe-CCCCEEEEEecCC-----CcEECC-eeecCCCCCHHHHHHHHHHHHhCCeeee--eEEEEEecCCcee
Confidence 46678888888 4689999998753 789998 9999999999999999999999998654 3333322110 1
Q ss_pred e-cCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 114 V-INDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 114 ~-~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
. ...+. .+....+|++...... .+..+.+|+.+++|++++++.+++
T Consensus 77 ~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 77 VKPNGDD--EQYIVTLYYVTKVFGG---KLVPDGDETLELKFFSLDELPELI 123 (132)
T ss_pred ecCCCCc--EEEEEEEEEEEeccCC---cccCCCCceeeEEEEChhHCccch
Confidence 0 11221 2234444544432221 124566799999999999997654
No 40
>PLN02325 nudix hydrolase
Probab=99.52 E-value=1.3e-13 Score=133.11 Aligned_cols=118 Identities=16% Similarity=0.205 Sum_probs=80.8
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeec
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~ 115 (757)
.+.++.++|++ +++|||+||...+ ..|.|.+| ||+++.|||+.+||+||++||||+++.. +..++.+.+....
T Consensus 8 p~~~v~~vi~~--~~~vLL~rr~~~~--~~g~W~lP-GG~ve~gEs~~~aa~REv~EEtGl~v~~--~~~l~~~~~~~~~ 80 (144)
T PLN02325 8 PRVAVVVFLLK--GNSVLLGRRRSSI--GDSTFALP-GGHLEFGESFEECAAREVKEETGLEIEK--IELLTVTNNVFLE 80 (144)
T ss_pred CeEEEEEEEEc--CCEEEEEEecCCC--CCCeEECC-ceeCCCCCCHHHHHHHHHHHHHCCCCcc--eEEEEEecceeec
Confidence 35567787877 5799999998642 35899999 9999999999999999999999998754 3444433221111
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.. ...+.+..+|.+...+... .....+++|+.+++|+++++|...
T Consensus 81 ~~--~~~~~i~~~f~~~~~~~~~-~~~~~e~~e~~~~~W~~~d~Lp~~ 125 (144)
T PLN02325 81 EP--KPSHYVTVFMRAVLADPSQ-VPQNLEPEKCYGWDWYEWDNLPEP 125 (144)
T ss_pred CC--CCcEEEEEEEEEEECCCCC-CCCcCCchhcCceEEEChHHCChh
Confidence 11 1235566666666533211 112345567889999999999753
No 41
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=6e-14 Score=129.94 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=79.1
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
++++++++ .+|++||+||+.. +.|.+| ||++++|||+.+||+||++||||+.+. ..+..++.+.+... +
T Consensus 2 ~~~~~i~~-~~~~vLL~~r~~~-----~~w~~P-gG~ve~gEt~~~aa~REl~EEtG~~~~-~~~~~~~~~~~~~~---~ 70 (120)
T cd04680 2 GARAVVTD-ADGRVLLVRHTYG-----PGWYLP-GGGLERGETFAEAARRELLEELGIRLA-VVAELLGVYYHSAS---G 70 (120)
T ss_pred ceEEEEEC-CCCeEEEEEECCC-----CcEeCC-CCcCCCCCCHHHHHHHHHHHHHCCccc-cccceEEEEecCCC---C
Confidence 46788888 4789999998653 489998 999999999999999999999999875 13445555443221 1
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.+...++|.+...... ...+++|+.+++|++++++.+.
T Consensus 71 ---~~~~~~~f~~~~~~~~----~~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 71 ---SWDHVIVFRARADTQP----VIRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred ---CceEEEEEEecccCCC----ccCCcccEEEEEEECHHHCccc
Confidence 2345677877654332 1456679999999999999653
No 42
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.52 E-value=8.8e-14 Score=132.26 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=80.0
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
+++.+++.+ ++++||++|+..+ ++|.|.+| ||+++.|||+.+||+||++||||+.+.. +..++.+.+... .
T Consensus 2 ~~~~~~i~~--~~~vLL~~r~~~~--~~~~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~--~ 72 (137)
T cd03427 2 LTTLCFIKD--PDKVLLLNRKKGP--GWGGWNGP-GGKVEPGETPEECAIRELKEETGLTIDN--LKLVGIIKFPFP--G 72 (137)
T ss_pred eEEEEEEEE--CCEEEEEEecCCC--CCCeEeCC-ceeCCCCCCHHHHHHHHHHHhhCeEeec--ceEEEEEEEEcC--C
Confidence 466777777 5899999998764 78999998 9999999999999999999999998754 344455544321 1
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
. ..+...++|.+....+. .. .++|..+++|++++++.+.
T Consensus 73 ~--~~~~~~~~f~~~~~~~~----~~-~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 73 E--EERYGVFVFLATEFEGE----PL-KESEEGILDWFDIDDLPLL 111 (137)
T ss_pred C--CcEEEEEEEEECCcccc----cC-CCCccccceEEcHhhcccc
Confidence 0 13456777777653332 12 3456678999999999654
No 43
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.52 E-value=1.8e-13 Score=128.30 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=79.7
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
|..|.++|++ ++++||++|.. .+.|.+| ||++++|||+.+||+||++||||+++.. ...++.+.+....+
T Consensus 1 ~~~~~~vi~~--~~~vLlv~~~~-----~~~~~lP-GG~ve~gEt~~~aa~REl~EEtGl~~~~--~~~l~~~~~~~~~~ 70 (125)
T cd04689 1 HLRARAIVRA--GNKVLLARVIG-----QPHYFLP-GGHVEPGETAENALRRELQEELGVAVSD--GRFLGAIENQWHEK 70 (125)
T ss_pred CeEEEEEEEe--CCEEEEEEecC-----CCCEECC-CCcCCCCCCHHHHHHHHHHHHhCceeec--cEEEEEEeeeeccC
Confidence 5677888876 68999998853 3689998 9999999999999999999999998653 44445443322212
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~ 161 (757)
++ ..+.+.++|.+........ .....++|+.+++|++++++.
T Consensus 71 ~~--~~~~~~~~f~~~~~~~~~~-~~~~~~~e~~~~~W~~~~el~ 112 (125)
T cd04689 71 GV--RTHEINHIFAVESSWLASD-GPPQADEDHLSFSWVPVSDLS 112 (125)
T ss_pred Cc--eEEEEEEEEEEEccccccc-CCccCccceEEEEEccHHHcc
Confidence 21 2456778888876433211 112345678999999999973
No 44
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.52 E-value=1.5e-13 Score=128.73 Aligned_cols=113 Identities=20% Similarity=0.304 Sum_probs=78.0
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
++.++|++ ++|++||+||...+..++|+|++| ||++++|||+.+||+||++||||+++... ..++...+ ... .+
T Consensus 3 ~v~~vv~~-~~~~iLl~kr~~~~~~~~g~w~~P-gG~ve~gEs~~~aa~RE~~EE~Gl~~~~~--~~~~~~~~-~~~-~~ 76 (129)
T cd04699 3 AVAALIVK-DVGRILILKRSKDERTAPGKWELP-GGKVEEGETFEEALKREVYEETGLTVTPF--LRYPSTVT-HED-SG 76 (129)
T ss_pred eEEEEEEC-CCCcEEEEEecCCCCCCCCcCcCC-ccCccCCCCHHHHHHHHHHHhhCcEEEee--eeeeEEEE-EcC-CC
Confidence 56677777 458999999988766679999998 99999999999999999999999986432 22221211 111 11
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
..+.+..+|.+..... ....++|+.+++|++++++..+.
T Consensus 77 --~~~~~~~~~~~~~~~~-----~~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 77 --VYNVIYLVFVCEALSG-----AVKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred --EEEEEEEEEEeeecCC-----cccCChhheEEEEecHHHhhhhh
Confidence 1233445555543222 13345688999999999996543
No 45
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.5e-13 Score=127.61 Aligned_cols=110 Identities=20% Similarity=0.313 Sum_probs=74.7
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
.+++++|++ .+++|||+||... ++|.|.+| ||+++.|||+.+||+||++||||+.+.. ...++...+ .. .
T Consensus 3 ~~~~~~v~~-~~~~vLl~~r~~~---~~~~w~~P-GG~ve~gEt~~~aa~RE~~EE~Gl~~~~--~~~~~~~~~-~~--~ 72 (127)
T cd04670 3 VGVGGLVLN-EKNEVLVVQERNK---TPNGWKLP-GGLVDPGEDIFDGAVREVLEETGIDTEF--VSVVGFRHA-HP--G 72 (127)
T ss_pred eEEEEEEEc-CCCeEEEEEccCC---CCCcEECC-CccCCCCCCHHHHHHHHHHHHHCCCcce--eEEEEEEec-CC--C
Confidence 457888888 4689999987653 68999998 9999999999999999999999998643 222222221 11 1
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
. + +.....|.+.+... . ..+.++++|+.+++|++++++.+
T Consensus 73 ~-~--~~~~~~~~~~~~~~-~-~~~~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 73 A-F--GKSDLYFICRLKPL-S-FDINFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred C-c--CceeEEEEEEEccC-c-CcCCCChhhhheeEEEcHHHHhc
Confidence 1 1 11222344443211 1 12355678999999999999954
No 46
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.50 E-value=2.5e-13 Score=127.45 Aligned_cols=113 Identities=26% Similarity=0.322 Sum_probs=79.2
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
|++.++++. +++|||+||.. .+.|.+| ||+++.|||+.+||+||++||||+.+.. ...++.+.......
T Consensus 2 ~~v~~vi~~---~~~vLl~~~~~-----~~~w~lP-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~~ 70 (126)
T cd04688 2 VRAAAIIIH---NGKLLVQKNPD-----ETFYRPP-GGGIEFGESSEEALIREFKEELGLKIEI--TRLLGVVENIFTYN 70 (126)
T ss_pred eEEEEEEEE---CCEEEEEEeCC-----CCeEECC-CccccCCCCHHHHHHHHHHHHhCCceec--ceeeEEEEEeeccC
Confidence 667777664 35999998865 4899998 9999999999999999999999998654 33444333211111
Q ss_pred CCcccceEEEEEEEEEEeCCCCCc---cccCCccccccEEEEcHHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLE---AFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~---~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
+ ...+.+.++|.+.+..+.... ....+++|+.++.|++++++..
T Consensus 71 -~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~ 117 (126)
T cd04688 71 -G-KPGHEIEFYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKE 117 (126)
T ss_pred -C-cccEEEEEEEEEEeCCCcccccccceeccCCCEEEEEEeeHHHccc
Confidence 1 224667888988875543210 0012457899999999999964
No 47
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.50 E-value=2.7e-13 Score=128.70 Aligned_cols=106 Identities=20% Similarity=0.353 Sum_probs=80.0
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+|.+++++ .++++||+||... .+|.|++| ||+++.|||+.+||+||++||||+++. .+..++.+.+..
T Consensus 2 ~v~i~l~~-~~~~vLL~~r~~~---~~~~w~lP-gG~ie~gEt~~~aA~REl~EEtGl~~~--~~~~l~~~~~~~----- 69 (131)
T cd03429 2 AVIVLVID-GGDRILLARQPRF---PPGMYSLL-AGFVEPGESLEEAVRREVKEEVGIRVK--NIRYVGSQPWPF----- 69 (131)
T ss_pred eEEEEEEe-CCCEEEEEEecCC---CCCcCcCC-cccccCCCCHHHHHhhhhhhccCceee--eeEEEeecCCCC-----
Confidence 46677777 4589999998653 26999998 999999999999999999999999864 355554432211
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.+.+..+|.+..... .+..+++|+.+++|++++++.+.
T Consensus 70 ---~~~~~~~f~~~~~~~----~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 70 ---PSSLMLGFTAEADSG----EIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred ---CceEEEEEEEEEcCC----cccCCchhhhccEeecHHHHhhc
Confidence 134566777776432 24567789999999999999886
No 48
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.49 E-value=4.6e-13 Score=131.10 Aligned_cols=118 Identities=18% Similarity=0.280 Sum_probs=81.8
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEE----Ee
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTF----LQ 111 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~----~~ 111 (757)
+|.++++++++ .+|+|||+||... +|.|++| ||++++|||+.+||.||++||||+.+.. +..++.+ .|
T Consensus 7 ~~~~v~~~i~~-~~g~vLL~~r~~~----~~~w~~P-~G~~~~gE~~~~aa~REl~EEtG~~~~~--~~~~~~~~~~~~y 78 (156)
T PRK00714 7 YRPNVGIILLN-RQGQVFWGRRIGQ----GHSWQFP-QGGIDPGETPEQAMYRELYEEVGLRPED--VEILAETRDWLRY 78 (156)
T ss_pred CCCeEEEEEEe-cCCEEEEEEEcCC----CCeEECC-cccCCCCcCHHHHHHHHHHHHhCCCccc--eEEEEEcCCeEEe
Confidence 56789999998 5789999999742 5899999 9999999999999999999999998642 3444432 22
Q ss_pred eeec-----CCCcccceEEEEEEEEEEeCCCCCccccC---CccccccEEEEcHHHHHHHH
Q 004387 112 QNVI-----NDGKFINNEFADVYLVTTLNPIPLEAFTL---QQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 112 ~~~~-----~~g~~~~~ei~~vy~~~~~~~~~~~~i~~---~~~Ev~e~~Wvs~~EL~~~l 164 (757)
..+. ....+.. ...++|.+....... .+.+ .++|+.+++|++++++.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~fl~~~~~~~~--~~~l~~~~~~E~~~~~W~~~del~~~~ 136 (156)
T PRK00714 79 DLPKRLVRRSKGVYRG-QKQKWFLLRLTGDDS--EINLNTTSHPEFDAWRWVSYWYPLDQV 136 (156)
T ss_pred cCcHHHhhccCCcccC-cEEEEEEEEecCCCc--cccCCCCCCCCeeeeEeCCHHHHHHhc
Confidence 1110 0111111 245677776633211 1222 33699999999999998754
No 49
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.49 E-value=4.4e-13 Score=127.09 Aligned_cols=112 Identities=21% Similarity=0.216 Sum_probs=78.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+|++++.+ ++++||.+|... .++.|.+| ||++++|||+.+||.||++||||+++.... .++.+.+.... .+
T Consensus 2 ~v~~ii~~--~~~vLlv~r~~~---~~~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~-~~ 72 (134)
T cd03675 2 TVAAVVER--DGRFLLVEEETD---GGLVFNQP-AGHLEPGESLIEAAVRETLEETGWHVEPTA--LLGIYQWTAPD-SD 72 (134)
T ss_pred eEEEEEEE--CCEEEEEEEccC---CCceEECC-CccCCCCCCHHHHHHHHHHHHHCcccccce--EEEEEEeecCC-CC
Confidence 45666665 689999998764 46899998 999999999999999999999999975433 33333332211 11
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
.....++|.+....... ....++|+.++.|++++++.++..
T Consensus 73 ---~~~~~~~f~~~~~~~~~---~~~~~~e~~~~~w~~~~el~~~~~ 113 (134)
T cd03675 73 ---TTYLRFAFAAELLEHLP---DQPLDSGIVRAHWLTLEEILALAA 113 (134)
T ss_pred ---eeEEEEEEEEEECCCCC---CCCCCCCceeeEEEeHHHHHhhhh
Confidence 22345667777644321 123446899999999999988653
No 50
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.49 E-value=3.4e-13 Score=124.79 Aligned_cols=107 Identities=26% Similarity=0.488 Sum_probs=78.3
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCc
Q 004387 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (757)
Q Consensus 40 v~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~ 119 (757)
+.+++++ .++++||+||.. .|.|.+| ||++++|||+.+||+||++||||+.+....+..++.+.+......+
T Consensus 3 ~~~~v~~-~~~~vLl~~r~~-----~~~w~~P-gG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~- 74 (118)
T cd04690 3 AAALILV-RDGRVLLVRKRG-----TDVFYLP-GGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPG- 74 (118)
T ss_pred EEEEEEe-cCCeEEEEEECC-----CCcEECC-CCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCC-
Confidence 4555666 478999998864 3789998 9999999999999999999999998654447777776643221111
Q ss_pred ccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 120 ~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+...++|.+.... . ....+|+.+++|++++++..
T Consensus 75 --~~~~~~~f~~~~~~--~----~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 75 --VDVRATVYVAELTG--E----PVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred --cEEEEEEEEEcccC--C----cCCCchhhccEEecHHHccc
Confidence 24567778776543 1 22346999999999999843
No 51
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=3.1e-13 Score=127.04 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=76.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
++++++++ .+++|||++|... .++|.|.+| ||+++.|||+.+||+||++||||+++... ..++.... .
T Consensus 2 ~~~~vv~~-~~~~vLl~~r~~~--~~~~~w~lP-gG~ve~gEt~~~aa~REl~EEtG~~~~~~--~~~~~~~~-----~- 69 (123)
T cd04671 2 IVAAVILN-NQGEVLLIQEAKR--SCRGKWYLP-AGRMEPGETIEEAVKREVKEETGLDCEPT--TLLSVEEQ-----G- 69 (123)
T ss_pred EEEEEEEc-CCCEEEEEEecCC--CCCCeEECc-eeecCCCCCHHHHHHHHHHHHHCCeeecc--eEEEEEcc-----C-
Confidence 56777887 4789999998753 358999999 99999999999999999999999987543 23322111 1
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~ 161 (757)
.+.+.++|.+...++... ....++.|+.+++|++++++.
T Consensus 70 ---~~~~~~~f~a~~~~g~~~-~~~~~~~e~~~~~W~~~~el~ 108 (123)
T cd04671 70 ---GSWFRFVFTGNITGGDLK-TEKEADSESLQARWYSNKDLP 108 (123)
T ss_pred ---CeEEEEEEEEEEeCCeEc-cCCCCCcceEEEEEECHHHCC
Confidence 234567787776543210 001234678899999999993
No 52
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=9.8e-13 Score=124.63 Aligned_cols=102 Identities=25% Similarity=0.338 Sum_probs=70.9
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEE--EEEeeeecCCCcccceEE
Q 004387 48 STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVF--TFLQQNVINDGKFINNEF 125 (757)
Q Consensus 48 ~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~--~~~~~~~~~~g~~~~~ei 125 (757)
.++++||.+|+.. ++|.|.+| ||++++|||+.+||+||++||||+++.. +.... ...+.. + + .....
T Consensus 12 ~~~~vLl~~r~~~---~~g~w~~P-gG~ve~gEs~~~aa~RE~~EEtGl~~~~--~~~~~~~~~~~~~--~-~--~~~~~ 80 (131)
T cd04695 12 KETKVLLLKRVKT---LGGFWCHV-AGGVEAGETAWQAALRELKEETGISLPE--LYNADYLEQFYEA--N-D--NRILM 80 (131)
T ss_pred CCCEEEEEEecCC---CCCcEECC-cccccCCCCHHHHHHHHHHHHhCCCccc--cccccceeeEeec--C-C--ceEEE
Confidence 4568999999864 68999998 9999999999999999999999998643 21111 111211 1 1 12234
Q ss_pred EEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 126 ADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 126 ~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
..+|.+....... ...++|+.+++|++++++.++.
T Consensus 81 ~~~f~~~~~~~~~----~~~~~E~~~~~W~~~~e~~~~~ 115 (131)
T cd04695 81 APVFVGFVPPHQE----VVLNHEHTEYRWCSFAEALELA 115 (131)
T ss_pred EEEEEEEecCCCc----cccCchhcccEecCHHHHHHhc
Confidence 5667666533211 2233799999999999998764
No 53
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.47 E-value=5.1e-13 Score=125.76 Aligned_cols=113 Identities=27% Similarity=0.398 Sum_probs=77.8
Q ss_pred EEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeec
Q 004387 38 RTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (757)
Q Consensus 38 rav~viV~n~~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~ 115 (757)
+++++++++..++ ++||.||+. |.|.+| ||++++|||+.+||+||++||||+.+.... .++.+......
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~------~~w~~P-gG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~ 73 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY------GHWDFP-KGHVEPGEDDLEAALRETEEETGITAEQLF--IVLGFKETLNY 73 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC------CcCcCC-cCCCCCCCCHHHHHHHHHHHHHCCChhhhh--hhccceeEEEc
Confidence 4677777774332 689998874 889998 999999999999999999999999865432 22222111111
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
... ..+..+++|.+....+. .+.++ +|+.++.|++++++.+++.
T Consensus 74 ~~~--~~~~~~~~f~~~~~~~~---~~~~~-~E~~~~~W~~~~e~~~~~~ 117 (130)
T cd03428 74 QVR--GKLKTVTYFLAELRPDV---EVKLS-EEHQDYRWLPYEEALKLLT 117 (130)
T ss_pred ccc--CcceEEEEEEEEeCCCC---ccccc-cceeeEEeecHHHHHHHcC
Confidence 100 12456677877764221 23444 7999999999999987653
No 54
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=5e-13 Score=124.69 Aligned_cols=111 Identities=21% Similarity=0.352 Sum_probs=76.5
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEE---eeeec
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL---QQNVI 115 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~---~~~~~ 115 (757)
++.+++++ .++++||+||+.. |.|++| ||+++.|||+.+||.||++||||+++... ..++.+. +....
T Consensus 4 ~v~~ii~~-~~~~vLl~~r~~~-----~~w~lP-gG~v~~~E~~~~aa~REl~EE~Gl~~~~~--~~~~~~~~~~~~~~~ 74 (129)
T cd04676 4 GVTAVVRD-DEGRVLLIRRSDN-----GLWALP-GGAVEPGESPADTAVREVREETGLDVEVT--GLVGIYTGPVHVVTY 74 (129)
T ss_pred eEEEEEEC-CCCeEEEEEecCC-----CcEECC-eeccCCCCCHHHHHHHHHHHHhCceeEee--EEEEEeecccceeec
Confidence 57777777 4689999999763 899998 99999999999999999999999986432 2222211 11111
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
+.+. ..+.+..+|.+...... .....+|+.+++|++++++.+.
T Consensus 75 ~~~~-~~~~~~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 75 PNGD-VRQYLDITFRCRVVGGE----LRVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred CCCC-cEEEEEEEEEEEeeCCe----ecCCCCceeEEEEEChhhCccc
Confidence 1221 12455666766554332 1245578899999999999653
No 55
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=5.1e-13 Score=125.05 Aligned_cols=110 Identities=22% Similarity=0.325 Sum_probs=75.8
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
..|.++|++ ++++||.+|.. .|.|.+| ||++++|||+.+||+||++||||+.+...++ ++.+........
T Consensus 3 ~~v~~~i~~--~~~vLL~~~~~-----~~~w~~P-GG~ve~gEs~~~aa~REl~EEtG~~~~~~~~--~~~~~~~~~~~~ 72 (123)
T cd04672 3 VDVRAAIFK--DGKILLVREKS-----DGLWSLP-GGWADVGLSPAENVVKEVKEETGLDVKVRKL--AAVDDRNKHHPP 72 (123)
T ss_pred ceEEEEEEE--CCEEEEEEEcC-----CCcEeCC-ccccCCCCCHHHHHHHHHHHHhCCeeeEeEE--EEEeccccccCC
Confidence 357788888 48999988864 4899998 9999999999999999999999998643322 222221111111
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
....+.+..+|.+..... .+..+ +|+.+++|++++++.++
T Consensus 73 -~~~~~~~~~~f~~~~~~~----~~~~~-~E~~~~~W~~~~el~~l 112 (123)
T cd04672 73 -PQPYQVYKLFFLCEILGG----EFKPN-IETSEVGFFALDDLPPL 112 (123)
T ss_pred -CCceEEEEEEEEEEecCC----cccCC-CceeeeEEECHHHCccc
Confidence 012344556666665332 12344 78999999999999664
No 56
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.46 E-value=8.3e-13 Score=125.95 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=80.5
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCcc-CCCceEEEEEEEeeeecC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL-PKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v-~~~~L~~v~~~~~~~~~~ 116 (757)
|++++++++ .+|+|||++|...+..+++.|.+| ||+++.|||+.+||.||++||||+.+ ....+.....+.+.. .
T Consensus 1 ~~~~~~i~~-~~g~vLl~r~~~~~~~~~~~w~~P-gG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~--~ 76 (133)
T cd04685 1 RAARVVLLD-PDDRVLLLRGDDPDSPGPDWWFTP-GGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTF--L 76 (133)
T ss_pred CeEEEEEEc-CCCeEEEEEEeCCCCCCCCEEECC-cCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEe--c
Confidence 578999998 588999998876544568899998 99999999999999999999999987 433332222222221 1
Q ss_pred CCcccceEEEEEEEEEEeCCCCCc-cccCC-ccccccEEEEcHHHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLE-AFTLQ-QTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~-~i~~~-~~Ev~e~~Wvs~~EL~~~ 163 (757)
+.. .+...++|.+......... ..... ..++.+++|+++++|.+.
T Consensus 77 ~~~--~~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 77 GVD--GRQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred Ccc--ceeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 111 2334567777664322110 11111 235678999999999763
No 57
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.45 E-value=6.4e-13 Score=128.58 Aligned_cols=114 Identities=21% Similarity=0.326 Sum_probs=81.2
Q ss_pred eeEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeec
Q 004387 36 YHRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVI 115 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~ 115 (757)
...+++++++. +++|||+||... .+.|.|++| ||+++.|||+++||+||++||||+++.. +..++.+....+.
T Consensus 9 p~~~v~~~i~~--~~~iLLvrR~~~--p~~g~WalP-GG~ve~GEt~eeaa~REl~EETgL~~~~--~~~~~v~~~~~rd 81 (145)
T COG1051 9 PLVAVGALIVR--NGRILLVRRANE--PGAGYWALP-GGFVEIGETLEEAARRELKEETGLRVRV--LELLAVFDDPGRD 81 (145)
T ss_pred cceeeeEEEEe--CCEEEEEEecCC--CCCCcEeCC-CccCCCCCCHHHHHHHHHHHHhCCcccc--eeEEEEecCCCCC
Confidence 45678888877 569999999875 457999999 9999999999999999999999999543 4555555433222
Q ss_pred CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 116 NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 116 ~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
+ ..+.++++|++....+.. .....++..++.|++++++...
T Consensus 82 ~----r~~~v~~~~~~~~~~g~~---~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 82 P----RGHHVSFLFFAAEPEGEL---LAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred C----ceeEEEEEEEEEecCCCc---ccCChhhHhhcceecHhHcccc
Confidence 1 124556666665532211 1223257888999999999653
No 58
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.45 E-value=1.6e-12 Score=122.18 Aligned_cols=114 Identities=18% Similarity=0.158 Sum_probs=79.1
Q ss_pred EEEEEEEecC--CCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 39 TVNAWIFAES--TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 39 av~viV~n~~--~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
+++++++... .+++||.+|... |.|.+| ||+++.|||+.+||+||++||||+.+... +..++.+.+..+..
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~-----~~w~~P-gG~ve~~E~~~~aa~RE~~EEtG~~~~~~-~~~l~~~~~~~~~~ 74 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRT-----GRWIVP-KGGPEKDESPAEAAAREAWEEAGVRGKIG-KRPLGRFEYRKRSK 74 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCC-----CeEECC-CCCcCCCCCHHHHHHHHHHHHhCCccccc-ceEEEEEEeeecCC
Confidence 4566666633 257999887642 899998 99999999999999999999999986432 25667666543211
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
. ...+..+++|.+....... .....|+.+++|++++++.+++.
T Consensus 75 ~--~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~W~~~~ea~~~~~ 117 (122)
T cd04666 75 N--RPPRCEVAVFPLEVTEELD----EWPEMHQRKRKWFSPEEAALLVE 117 (122)
T ss_pred C--CCceEEEEEEEEEEecccc----CCcccCceEEEEecHHHHHHhcC
Confidence 1 1124456677776543221 22335778999999999987654
No 59
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.44 E-value=1.4e-12 Score=123.61 Aligned_cols=100 Identities=24% Similarity=0.421 Sum_probs=70.2
Q ss_pred CCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEE
Q 004387 48 STQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFAD 127 (757)
Q Consensus 48 ~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~ 127 (757)
.+|+|||+||+.. ..++|+|.+| ||+++.|||+.+|++||+.||||+.+.... .++.+.+. .+. .+...+
T Consensus 13 ~~~~vLL~~R~~~-~~~~g~w~~P-gG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~--~~~~~~~~--~~~----~~~~~~ 82 (135)
T PRK10546 13 RDGKILLAQRPAH-SDQAGLWEFA-GGKVEPGESQPQALIRELREELGIEATVGE--YVASHQRE--VSG----RRIHLH 82 (135)
T ss_pred cCCEEEEEEccCC-CCCCCcEECC-cccCCCCCCHHHHHHHHHHHHHCCccccce--eEEEEEEe--cCC----cEEEEE
Confidence 3689999999765 4578999998 999999999999999999999999875433 33333321 111 122345
Q ss_pred EEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 128 VYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 128 vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
+|.+....+ .+.+.|..+++|++++++.++
T Consensus 83 ~~~~~~~~~------~~~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 83 AWHVPDFHG------ELQAHEHQALVWCTPEEALRY 112 (135)
T ss_pred EEEEEEecC------cccccccceeEEcCHHHcccC
Confidence 565554322 122346788999999999653
No 60
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.43 E-value=1.1e-12 Score=127.01 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=74.5
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
++++++++.+++++||+||.. ++.|++| ||++++|||+.+||+||++||||+.+.. +.....+. ....
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~-----~~~W~lP-GG~ve~gEs~~~AA~REl~EETGl~v~~--~~~~~~~~--~~~~-- 70 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWK-----SKSWSFP-KGKINKDEDDHDCAIREVYEETGFDISK--YIDKDDYI--ELII-- 70 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecC-----CCCEECC-CccCCCCcCHHHHHHHHHHHhhCcccee--ccccceee--eccc--
Confidence 567788884346999998853 3589998 9999999999999999999999998642 11111111 1111
Q ss_pred cccceEEEEEEEEEEeCCCCCccccC-CccccccEEEEcHHHHHHHHhc
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLLAK 166 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~-~~~Ev~e~~Wvs~~EL~~~l~~ 166 (757)
.....++|++....... ...+ .++|+.+++|++++++.+++..
T Consensus 71 ---~~~~~~~f~~~~~~~~~--~~~~~~~~E~~~~~Wv~~~el~~~~~~ 114 (145)
T cd03672 71 ---RGQNVKLYIVPGVPEDT--PFEPKTRKEISKIEWFDIKDLPTKKNK 114 (145)
T ss_pred ---CCcEEEEEEEecCCCCc--ccCcCChhhhheEEEeeHHHhhhhhhh
Confidence 11234566554322111 1123 3479999999999999988764
No 61
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.4e-12 Score=122.07 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=72.1
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCc
Q 004387 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (757)
Q Consensus 40 v~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~ 119 (757)
+++++++ .+|++||++|.... .+.|.+| ||+++.|||+.+||+||++||||+++.... .++.+.+ .+
T Consensus 3 ~~~ii~~-~~~~vLL~~r~~~~---~~~w~lP-GG~ve~gEs~~~a~~REl~EEtGl~~~~~~--~~~~~~~----~~-- 69 (121)
T cd04669 3 ASIVIIN-DQGEILLIRRIKPG---KTYYVFP-GGGIEEGETPEEAAKREALEELGLDVRVEE--IFLIVNQ----NG-- 69 (121)
T ss_pred eEEEEEe-CCCEEEEEEEecCC---CCcEECC-ceeccCCCCHHHHHHHHHHHhhCeeEeeee--EEEEEee----CC--
Confidence 4555666 35899999986532 5899998 999999999999999999999999974422 2222222 11
Q ss_pred ccceEEEEEEEEEEeCCCCC----cccc-CCccccccEEEEcHHHHHHH
Q 004387 120 FINNEFADVYLVTTLNPIPL----EAFT-LQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 120 ~~~~ei~~vy~~~~~~~~~~----~~i~-~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
...++|.+...++... .... .+++++.+++|++++++.++
T Consensus 70 ----~~~~~f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 70 ----RTEHYFLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred ----cEEEEEEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 2356777776543210 0001 11345667999999999764
No 62
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=99.42 E-value=4.5e-13 Score=134.66 Aligned_cols=199 Identities=16% Similarity=0.116 Sum_probs=155.9
Q ss_pred cccccccEEEEcCCCCcccccccccccccCCceeEEEEEEEEec--CCC--EEEEEEeCCCCCCCCCCeeeccccccCCC
Q 004387 4 SVVQEEHLDVLTMTGQKTGITKPRSEVHRVGDYHRTVNAWIFAE--STQ--ELLLQRRADFKDSWPGMWDISSAGHISAG 79 (757)
Q Consensus 4 ~~~~~E~~~vvd~~~~~~G~~~~R~~~h~~g~~hrav~viV~n~--~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~G 79 (757)
.++++|...++ .+-+++= .++|+....+|.+.-.++|--+-+ ..+ ++|++||+.+|.+|||+|++.+||++..|
T Consensus 100 ~qwrne~Y~v~-~~kkp~l-~vERa~~~lfGv~~yGvhingYV~~pk~~~l~iWvprRS~TKqTWP~~lDN~vaGGl~~g 177 (306)
T KOG4313|consen 100 DQWRNELYTVY-KSKKPVL-AVERAATPLFGVRKYGVHINGYVRHPKLGPLCIWVPRRSNTKQTWPGKLDNMVAGGLSVG 177 (306)
T ss_pred hcccceeeEEE-ecCccee-EeeecccceeeEEEeeeeeeeeecCCCcCceEEEecccCCccccCcchhhhhhccccccC
Confidence 35678888888 5555553 379999999999888888755442 223 69999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhCCccC-CCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHH
Q 004387 80 DSSLISAQRELQEELGINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYE 158 (757)
Q Consensus 80 Et~~eAAiREl~EEtGI~v~-~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~ 158 (757)
-.+-++|+.|..||+.++.+ ...|...|+..|..-.+. .+...+..++|.+.++.+.- .++++.|++++..+++.
T Consensus 178 ~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr-~~~~pe~qYVfDL~l~~d~i---P~~nDGEV~~F~Lltl~ 253 (306)
T KOG4313|consen 178 FGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESR-QGLFPETQYVFDLELPLDFI---PQNNDGEVQAFELLTLK 253 (306)
T ss_pred chHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehh-hccCccceEEEeccCchhhc---CCCCCCceeeEeeecHH
Confidence 99999999999999999863 345777777666422111 12356788999998865542 26678999999999999
Q ss_pred HHHHHHhcCCCCcccCCCCCchHHHHHHHHHH--hhhhhhhhHHHHHHHHhhhhccccc
Q 004387 159 EYKNLLAKDDPSFVPYDVNGGYGQLFNIISQR--YKENTMERSLTLQKQLRRYAHVSLN 215 (757)
Q Consensus 159 EL~~~l~~~~~~f~p~~~~~~~~~~f~~l~~~--~~~~~~~r~~~L~~rl~r~~pv~l~ 215 (757)
|..+.+.. ..|+|.|. ..++|++.++ +++ ..+.+-+.-.|++|-+|++..
T Consensus 254 ~~v~~l~~--k~FKpncA----lV~iDflirHg~itp-~~p~yl~~l~rihr~lp~p~~ 305 (306)
T KOG4313|consen 254 DCVERLFT--KDFKPNCA----LVVIDFLIRHGTITP-QHPQYLQTLERIHRPLPVPVG 305 (306)
T ss_pred HHHHHHHh--hccCCCcc----eEEEEEeecceecCC-CChhHHHHHHhccccCCcCCC
Confidence 99998875 56999974 3568888887 444 677788888899999998864
No 63
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.42 E-value=1.9e-12 Score=119.08 Aligned_cols=92 Identities=22% Similarity=0.440 Sum_probs=69.3
Q ss_pred CCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEE
Q 004387 49 TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADV 128 (757)
Q Consensus 49 ~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~v 128 (757)
++++||++|.. |.|.+| ||++++|||+.+||.||++||||+.+. .+..++.+.. .+...++
T Consensus 10 ~~~vLlv~r~~------~~w~~P-gG~ve~gE~~~~aa~REl~EEtGl~~~--~~~~~~~~~~----------~~~~~~~ 70 (112)
T cd04667 10 GGRVLLVRKSG------SRWALP-GGKIEPGETPLQAARRELQEETGLQGL--DLLYLFHVDG----------GSTRHHV 70 (112)
T ss_pred CCEEEEEEcCC------CcEeCC-CCcCCCCCCHHHHHHHHHHHHhCCccc--ceEEEEEEeC----------CCEEEEE
Confidence 67999999853 899998 999999999999999999999999853 4555554321 1234567
Q ss_pred EEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 129 YLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 129 y~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
|.+.+.... ....++|+.+++|++++++.++
T Consensus 71 f~~~~~~~~----~~~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 71 FVASVPPSA----QPKPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred EEEEcCCcC----CCCCchheeEEEEecHHHhhhc
Confidence 777654321 1334579999999999999764
No 64
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.41 E-value=2.8e-12 Score=119.91 Aligned_cols=106 Identities=22% Similarity=0.305 Sum_probs=72.5
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCc
Q 004387 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (757)
Q Consensus 40 v~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~ 119 (757)
+.++|++ .+|++||+||+.. ..++|+|++| ||++++||++.+||.||++||||+++.. ...++.+.+. .+.
T Consensus 7 ~~~ii~~-~~~~vll~rR~~~-~~~~g~w~~P-gG~~~~gE~~~~a~~Re~~EE~gl~~~~--~~~~~~~~~~--~~~-- 77 (129)
T PRK10776 7 AVGIIRN-PNNEIFITRRAAD-AHMAGKWEFP-GGKIEAGETPEQALIRELQEEVGITVQH--ATLFEKLEYE--FPD-- 77 (129)
T ss_pred EEEEEEC-CCCEEEEEEecCC-CCCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCCceec--ceEEEEEEee--CCC--
Confidence 3344455 4679999999876 4679999998 9999999999999999999999998543 2334433322 121
Q ss_pred ccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 120 ~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+...++|.+..... .+.+.|..+++|++++++..
T Consensus 78 --~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~~l~~ 112 (129)
T PRK10776 78 --RHITLWFWLVESWEG------EPWGKEGQPGRWVSQVALNA 112 (129)
T ss_pred --cEEEEEEEEEEEECC------ccCCccCCccEEecHHHCcc
Confidence 122344555543222 12235778899999999964
No 65
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.40 E-value=2.7e-12 Score=118.55 Aligned_cols=106 Identities=26% Similarity=0.413 Sum_probs=77.2
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCc
Q 004387 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (757)
Q Consensus 40 v~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~ 119 (757)
+.+++++ +++++||++|+..+ .++|+|++| ||+++.||++.+||.||+.||||+++.. ...++.+.+.. +.
T Consensus 4 ~~~~i~~-~~~~~Ll~~r~~~~-~~~g~w~~p-~G~~~~~e~~~~~a~Re~~EE~g~~~~~--~~~~~~~~~~~--~~-- 74 (124)
T cd03425 4 VAAIIID-DDGRILIAQRPAGK-HLGGLWEFP-GGKVEPGETPEQALVRELREELGIEVEV--GELLATVEHDY--PD-- 74 (124)
T ss_pred EEEEEEC-CCCEEEEEEeCCCC-CCCCeEeCC-CcccCCCCCHHHHHHHHHHHhhCcEEec--cceEEEEEeeC--CC--
Confidence 4445556 45899999998765 789999998 9999999999999999999999998643 34444444322 11
Q ss_pred ccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 120 ~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+...++|.+..... ...+.|..++.|++++++.+
T Consensus 75 --~~~~~~~~~~~~~~~------~~~~~e~~~~~W~~~~el~~ 109 (124)
T cd03425 75 --KRVTLHVFLVELWSG------EPQLLEHQELRWVPPEELDD 109 (124)
T ss_pred --CeEEEEEEEEeeeCC------CcccccCceEEEeeHHHccc
Confidence 234567777765332 12245788999999999965
No 66
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.40 E-value=1.5e-12 Score=137.28 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=84.5
Q ss_pred ccccccCCcee-----EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCC
Q 004387 27 RSEVHRVGDYH-----RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKD 101 (757)
Q Consensus 27 R~~~h~~g~~h-----rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~ 101 (757)
+..|..+|..| .+|.++|.+ +++|||+||...+ +|+|.+| ||++++|||+++||+||++||||+++.
T Consensus 117 ~~~C~~c~~~~yp~~~paViv~V~~--~~~iLL~rr~~~~---~g~wslP-gG~vE~GEs~eeAa~REv~EEtGl~v~-- 188 (256)
T PRK00241 117 AMLCPHCRERYYPRIAPCIIVAVRR--GDEILLARHPRHR---NGVYTVL-AGFVEVGETLEQCVAREVMEESGIKVK-- 188 (256)
T ss_pred eEECCCCCCEECCCCCCEEEEEEEe--CCEEEEEEccCCC---CCcEeCc-ccCCCCCCCHHHHhhhhhhhccCceee--
Confidence 45566777554 234444444 6899999886542 6999998 999999999999999999999999864
Q ss_pred ceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 102 AFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 102 ~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+..++...+. .+ +...+.|.+...++ .+.++++|+.+++|++++++..
T Consensus 189 ~~~~~~s~~~~--~p------~~lm~~f~a~~~~~----~~~~~~~Ei~~a~W~~~del~~ 237 (256)
T PRK00241 189 NLRYVGSQPWP--FP------HSLMLGFHADYDSG----EIVFDPKEIADAQWFRYDELPL 237 (256)
T ss_pred eeEEEEeEeec--CC------CeEEEEEEEEecCC----cccCCcccEEEEEEECHHHCcc
Confidence 45666554331 11 24567787776433 2466778999999999999854
No 67
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.40 E-value=5.4e-12 Score=119.76 Aligned_cols=113 Identities=23% Similarity=0.225 Sum_probs=74.2
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEe--eeecC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQ--QNVIN 116 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~--~~~~~ 116 (757)
+|.++|++ +++|||++|.. .+.|.+| ||++++|||+.+||+||++||||+.+.. ....++.+.. ....+
T Consensus 2 ~~~~ii~~--~~~vLLv~~~~-----~~~w~lP-gG~ve~gEt~~~aa~REl~EEtGl~~~~-~~~~l~~~~~~~~~~~~ 72 (131)
T cd04686 2 AVRAIILQ--GDKILLLYTKR-----YGDYKFP-GGGVEKGEDHIEGLIRELQEETGATNIR-VIEKFGTYTERRPWRKP 72 (131)
T ss_pred cEEEEEEE--CCEEEEEEEcC-----CCcEECc-cccCCCCCCHHHHHHHHHHHHHCCcccc-cceEEEEEEeeccccCC
Confidence 56777777 58999998754 2689998 9999999999999999999999998521 1233333321 11111
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCcccc---ccEEEEcHHHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEV---SAVKYIAYEEYKNL 163 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev---~e~~Wvs~~EL~~~ 163 (757)
.+ ...+.+.++|.+.+..... .....+.|. ..++|++++++.+.
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 73 DA-DIFHMISYYYLCEVDAELG--AQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred CC-ceeEEEEEEEEEEEcCCcC--CcccchhhHhcCCCcEEecHHHHHHh
Confidence 11 1234556778877644321 123333333 35899999999764
No 68
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.39 E-value=2.8e-12 Score=121.33 Aligned_cols=104 Identities=24% Similarity=0.257 Sum_probs=75.3
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
.++++++++ +++|||.+|... ..+|.|++| ||+++.|||+++||+||++||||+++... ..++.+.. +.
T Consensus 14 ~~v~~ii~~--~~~vLL~kr~~~--~~~g~w~lP-gG~ve~gE~~~~a~~REl~EEtGl~~~~~--~~~~~~~~----~~ 82 (130)
T cd04511 14 IIVGCVPEW--EGKVLLCRRAIE--PRHGFWTLP-AGFMENGETTEQGALRETWEEAGARVEID--GLYAVYSV----PH 82 (130)
T ss_pred EEEEEEEec--CCEEEEEEecCC--CCCCeEECC-cccccCCCCHHHHHHHHHHHHhCCEEEee--eEEEEEec----CC
Confidence 356666666 589999999764 357999998 99999999999999999999999986432 22332221 11
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYK 161 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~ 161 (757)
.+.+.++|.+...... +. ...|..+.+|+++++|.
T Consensus 83 ----~~~~~~~f~~~~~~~~----~~-~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 83 ----ISQVYMFYRARLLDLD----FA-PGPESLEVRLFTEEEIP 117 (130)
T ss_pred ----ceEEEEEEEEEEcCCc----cc-CCcchhceEEECHHHCC
Confidence 2346677888775432 22 33578899999999994
No 69
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.38 E-value=5.1e-12 Score=115.68 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=81.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
++++++++ .++++||++|+.. ++|+|.+| ||+++.||++.+||+||+.||+|+.+.. ....+.+.+.....
T Consensus 2 ~~~~i~~~-~~~~ill~kr~~~---~~~~~~~p-~G~~~~~e~~~~~a~RE~~EE~Gl~~~~--~~~~~~~~~~~~~~-- 72 (123)
T cd02883 2 AVGAVILD-EDGRVLLVRRADS---PGGLWELP-GGGVEPGETLEEAAIREVREETGLDVDV--LRLLGVYEVESPDE-- 72 (123)
T ss_pred ceEEEEEC-CCCCEEEEEEcCC---CCCeEeCC-cccccCCCCHHHHHHHHHHHhhCcccee--eeEEEEEEeeccCC--
Confidence 57788887 3589999999875 78999998 9999999999999999999999998542 23444444433221
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
..+...++|.+....+.. ...++.|+.+++|++++++.+
T Consensus 73 --~~~~~~~~~~~~~~~~~~---~~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 73 --GEHAVVFVFLARLVGGEP---TLLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred --CceEEEEEEEEEeCCCCc---CCCCCCccceEEEEcHHHCcc
Confidence 135667788887654322 124567889999999999976
No 70
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.38 E-value=5.1e-12 Score=138.82 Aligned_cols=120 Identities=18% Similarity=0.261 Sum_probs=81.7
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
+.++.++|++ +|+|||++|... .++|.|.+| ||++++|||+++||+||++||||+++....+.......+....+
T Consensus 203 ~vtv~avv~~--~g~VLLvrR~~~--p~~g~W~lP-GG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p 277 (340)
T PRK05379 203 FVTVDAVVVQ--SGHVLLVRRRAE--PGKGLWALP-GGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHP 277 (340)
T ss_pred ceEEEEEEEE--CCEEEEEEecCC--CCCCeEECC-cccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCC
Confidence 4677777776 689999999764 347999998 99999999999999999999999987544333222111111111
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
+.....+.+.++|.+.+..... ..+ ...+|+.+++|++++++.+.
T Consensus 278 ~r~~~~~~i~~~f~~~~~~~~~-~~~-~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 278 GRSLRGRTITHAFLFEFPAGEL-PRV-KGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCcEEEEEEEEEecCCcc-Ccc-CCCCceeeEEEEEHHHhhhh
Confidence 1111235677888877643221 112 23468999999999999653
No 71
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.36 E-value=4.1e-12 Score=120.82 Aligned_cols=106 Identities=19% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceE--EEEEEEeeeecCCCc---ccce
Q 004387 49 TQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFE--FVFTFLQQNVINDGK---FINN 123 (757)
Q Consensus 49 ~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~--~v~~~~~~~~~~~g~---~~~~ 123 (757)
++++||+||.... .|.|.+| ||++++|||+.+||+||++||||+.+...-+. .++.+.+.. +.+. -..+
T Consensus 12 ~~~~Llvk~~~~~---~g~W~fP-gG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~--~~~~~~~~~~~ 85 (132)
T cd04661 12 DTLVLLVQQKVGS---QNHWILP-QGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKY--PKAVRNEGIVG 85 (132)
T ss_pred CcEEEEEEeecCC---CCeeECC-cccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEec--CcccccccCcc
Confidence 5689999886532 5899999 99999999999999999999999986431110 111222211 1110 0112
Q ss_pred EEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 124 EFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 124 ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
..+++|.+...++.. .+ .+|+.+++|++++++.+.+.
T Consensus 86 ~~~~~f~~~~~~g~~----~~-~~e~~~~~W~~~~el~~~l~ 122 (132)
T cd04661 86 AKVFFFKARYMSGQF----EL-SQNQVDFKWLAKEELQKYLN 122 (132)
T ss_pred cEEEEEEEEEecCcc----cc-CCCcceeEecCHHHHHhhcC
Confidence 457788887755422 33 26899999999999987653
No 72
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=1.3e-11 Score=115.55 Aligned_cols=107 Identities=16% Similarity=0.117 Sum_probs=72.7
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
.+.+++++ .++++||+||... ..+.|+|++| ||+++.|||+.+|++||+.||||+.+.... .++.+.+. .+.
T Consensus 6 ~~~~ii~~-~~~~vLl~~R~~~-~~~~g~w~~P-gg~ve~ge~~~~~~~RE~~EE~g~~~~~~~--~~~~~~h~--~~~- 77 (128)
T TIGR00586 6 IAVGIIRN-ENGEIIITRRADG-HMFAKLLEFP-GGKEEGGETPEQAVVRELEEEIGIPQHFSE--FEKLEYEF--YPR- 77 (128)
T ss_pred EEEEEEEC-CCCEEEEEEEeCC-CCCCCeEECC-CcccCCCCCHHHHHHHHHHHHHCCcceeee--EEEEEEEE--CCC-
Confidence 34444445 4679999999765 5678999998 999999999999999999999999864322 23333221 111
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+...++|.+...+.. +.+.+..++.|++++++.+
T Consensus 78 ---~~~~~~~~~~~~~~~~------~~~~~~~~~~W~~~~~l~~ 112 (128)
T TIGR00586 78 ---HITLWFWLLERWEGGP------PGKEGQPEEWWVLVGLLAD 112 (128)
T ss_pred ---cEEEEEEEEEEEcCCC------cCcccccccEEeCHHHCCc
Confidence 2234556655543221 1234567889999999965
No 73
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.34 E-value=1.8e-11 Score=123.71 Aligned_cols=113 Identities=21% Similarity=0.202 Sum_probs=81.8
Q ss_pred EEEEE-EEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCC-CCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecC
Q 004387 39 TVNAW-IFAESTQELLLQRRADFKDSWPGMWDISSAGHISAG-DSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIN 116 (757)
Q Consensus 39 av~vi-V~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~G-Et~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~ 116 (757)
++.++ +.+..++.+|++||+.....++|.|++| ||.+|+| |++++||+||++||||+.. ..+..++.+......
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~P-GG~~e~~de~~~~tA~REl~EEtGl~~--~~~~~lg~l~~~~~~- 107 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFP-GGAVDPTDASLIATALREAQEEVAIPP--SAVEVIGVLPPVDSS- 107 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcC-CcccCCCcccHHHHHHHHHHHHHCCCc--cceEEEEEeeeeecc-
Confidence 44444 3332345899999988767789999998 9999986 6899999999999999985 457777776532211
Q ss_pred CCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 117 DGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 117 ~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
.+ ..++.|.+.+.... ...++++|+.++.|++++++.+.
T Consensus 108 ~~-----~~~~~~v~~~~~~~---~~~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 108 TG-----YQVTPVVGIIPPDL---PYRANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred CC-----cEEEEEEEEECCCC---CCCCChhhhheEEEEeHHHHhCc
Confidence 11 23455555554333 23667789999999999999775
No 74
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.30 E-value=4.8e-11 Score=120.15 Aligned_cols=115 Identities=22% Similarity=0.255 Sum_probs=83.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+|.++.++ .++++||+|+... ...++.|++| ||++++|||+++||+||++||||+.+ ..+..++.+.... +
T Consensus 49 ~v~v~~~~-~~~~vlLvrq~r~-~~~~~~~elP-aG~ve~gE~~~~aA~REl~EEtG~~~--~~l~~l~~~~~~~----~ 119 (185)
T PRK11762 49 AVMIVPIL-DDDTLLLIREYAA-GTERYELGFP-KGLIDPGETPLEAANRELKEEVGFGA--RQLTFLKELSLAP----S 119 (185)
T ss_pred EEEEEEEe-CCCEEEEEEeecC-CCCCcEEEcc-ceeCCCCCCHHHHHHHHHHHHHCCCC--cceEEEEEEecCC----C
Confidence 56666666 4678888876433 3457889998 99999999999999999999999985 4577777665321 1
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
. ....+++|++...... ....++.|..++.|++++++.+++..+
T Consensus 120 -~-~~~~~~~f~a~~~~~~---~~~~~e~E~i~~~~~~~~e~~~~~~~g 163 (185)
T PRK11762 120 -Y-FSSKMNIVLAEDLYPE---RLEGDEPEPLEVVRWPLADLDELLARP 163 (185)
T ss_pred -c-cCcEEEEEEEEccccc---cCCCCCCceeEEEEEcHHHHHHHHHcC
Confidence 1 2346778887643221 123455677789999999999988764
No 75
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.29 E-value=2.6e-11 Score=122.11 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=88.7
Q ss_pred cccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCC----CCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCC
Q 004387 26 PRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKD----SWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKD 101 (757)
Q Consensus 26 ~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~----~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~ 101 (757)
.|..+++.+ +|.+++++..++++||.++-.... ..+..|.+| ||++++|||+++||+||++||||+.+.
T Consensus 37 ~~~~v~~~~----~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelP-aG~ve~gE~~~~aA~REl~EEtG~~~~-- 109 (185)
T TIGR00052 37 TREIYDRGN----AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELS-AGMVEKGESPEDVARREAIEEAGYQVK-- 109 (185)
T ss_pred EEEEEEcCC----eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEEC-cEecCCCCCHHHHHHHHccccccceec--
Confidence 455454444 677777874457888886533211 146799998 999999999999999999999999863
Q ss_pred ceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 102 AFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 102 ~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
.+..++.+... .| ...+..++|.++.........-...++|..+..|++++++.+++..+
T Consensus 110 ~~~~~~~~~~~----~g--~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G 169 (185)
T TIGR00052 110 NLRKLLSFYSS----PG--GVTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEG 169 (185)
T ss_pred ceEEEEEEEcC----CC--CCcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcC
Confidence 56666655321 12 23567899999875432111112234555678999999999998764
No 76
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.26 E-value=4.5e-11 Score=112.36 Aligned_cols=109 Identities=20% Similarity=0.311 Sum_probs=68.2
Q ss_pred EEEEEEEecCCC--EEEEEEeCCC--CCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeee
Q 004387 39 TVNAWIFAESTQ--ELLLQRRADF--KDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNV 114 (757)
Q Consensus 39 av~viV~n~~~g--~ILL~rRs~~--k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~ 114 (757)
++++++++.+++ +|||++|... ....+|.|++| ||+++.||++.+||+||++||||+.+. ..+..+..+.+
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lP-gG~ie~~E~~~~aA~REl~EEtGl~~~-~~~~~l~~~~~--- 76 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIP-KGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLKQ--- 76 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECC-cccCCCCcCHHHHHHHHHHHHhCCcce-eeEEeEEEEEC---
Confidence 456677654333 6999987432 22456899998 999999999999999999999999865 23333333321
Q ss_pred cCCCcc-----------cceEEEEEEEEEEeCCCCCccccCC-ccccccEEEEcH
Q 004387 115 INDGKF-----------INNEFADVYLVTTLNPIPLEAFTLQ-QTEVSAVKYIAY 157 (757)
Q Consensus 115 ~~~g~~-----------~~~ei~~vy~~~~~~~~~~~~i~~~-~~Ev~e~~Wvs~ 157 (757)
+++.. .......+|.++..++. .... .+|..+++|+++
T Consensus 77 -~~~~~v~~fl~~~~~d~~~~~~~~f~~~~~~~~----~~~~~~~e~~~~~w~~~ 126 (126)
T cd04662 77 -SGGKVVHAWAVEADLDITDIKSNTFEMEWPKGS----GKMRKFPEVDRAGWFDI 126 (126)
T ss_pred -CCCeEEEEEEEEecCChhHeEEEEEEEEccCCC----CccccCCccceeEeecC
Confidence 11100 11223344444433322 1333 479999999973
No 77
>PLN02709 nudix hydrolase
Probab=99.26 E-value=6.3e-11 Score=121.39 Aligned_cols=120 Identities=15% Similarity=0.149 Sum_probs=86.1
Q ss_pred CceeEEEEEEEEec-----CCCEEEEEEeCCCCCCCCCCeeeccccccCCCC-CHHHHHHHHHHHHhCCccCCCceEEEE
Q 004387 34 GDYHRTVNAWIFAE-----STQELLLQRRADFKDSWPGMWDISSAGHISAGD-SSLISAQRELQEELGINLPKDAFEFVF 107 (757)
Q Consensus 34 g~~hrav~viV~n~-----~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GE-t~~eAAiREl~EEtGI~v~~~~L~~v~ 107 (757)
+..+.+|.+.++.. .+-+|||.+|+.....+||.|+|| ||++++|| ++.+||+||+.||+||+.. .+..++
T Consensus 30 ~~r~AAVLv~l~~~~~~~~~~~~vLl~~Rs~~l~~h~GqiafP-GG~~e~~D~~~~~tAlRE~~EEiGl~~~--~v~vlg 106 (222)
T PLN02709 30 PAKSSAVLVCLYQEQREDKNELRVILTKRSSTLSSHPGEVALP-GGKRDEEDKDDIATALREAREEIGLDPS--LVTIIS 106 (222)
T ss_pred CCCccEEEEEEeeccCCCCCceEEEEEEcCCCCCCCCCCccCC-CcccCCCCCCHHHHHHHHHHHHHCCCch--heEEee
Confidence 34566777777752 122799999998877899999999 99999985 7899999999999999853 455666
Q ss_pred EEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHH
Q 004387 108 TFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 108 ~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~ 163 (757)
........ . ...+..|++.+..... ..+.++++||+++.|+|++++.+.
T Consensus 107 ~L~~~~t~-s-----g~~V~P~V~~~~~~~~-~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 107 VLEPFVNK-K-----GMSVAPVIGFLHDKKA-FKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred ecCCeECC-C-----CCEEEEEEEEecCCCC-ccccCChhhhheeEEecHHHHhCC
Confidence 54432211 1 1356777776643211 123578899999999999999653
No 78
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.25 E-value=2.2e-10 Score=111.82 Aligned_cols=125 Identities=15% Similarity=0.176 Sum_probs=89.4
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
.|.++.+. ++++||.++.. ..|.+| ||++++|||+.+||+||++||||+.+ ..+..++.+.... +
T Consensus 26 ~V~ii~~~--~~~~LL~~~~~------~~~elP-gG~vE~gEt~~eaA~REl~EETG~~~--~~~~~lg~~~~~~----~ 90 (156)
T TIGR02705 26 HVLVIPRY--KDQWLLTEHKR------RGLEFP-GGKVEPGETSKEAAIREVMEETGAIV--KELHYIGQYEVEG----E 90 (156)
T ss_pred EEEEEEEE--CCEEEEEEEcC------CcEECC-ceecCCCCCHHHHHHHHHHHHhCcEe--eeeEEEEEEEecC----C
Confidence 44455455 56888887653 359998 99999999999999999999999975 4678888765422 1
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEE-EEcHHHHHHHHhcCCCCcccCCCCCchHHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVK-YIAYEEYKNLLAKDDPSFVPYDVNGGYGQLFNIIS 188 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~-Wvs~~EL~~~l~~~~~~f~p~~~~~~~~~~f~~l~ 188 (757)
......++|.+..... ... +|..+.. +++++++.+.+..++ .|+..+.|+....+++.+.
T Consensus 91 --~~~~~~~vf~A~~~~~------~~~-~e~~E~~~~~~~~~~~~~~~~g~-~~s~~~~d~~~~~~~~~~~ 151 (156)
T TIGR02705 91 --STDFVKDVYFAEVSAL------ESK-DDYLETKGPVLLQEIPDIIKADP-RFSFIMKDDVLLKCLERAK 151 (156)
T ss_pred --CcEEEEEEEEEEEecc------ccC-CCceeeEeEEEHHHHHHHHhcCC-cccEEEchHHHHHHHHHHH
Confidence 1456789999987532 122 4545555 799999999887654 6777777666666665553
No 79
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.20 E-value=3.3e-10 Score=115.62 Aligned_cols=128 Identities=19% Similarity=0.173 Sum_probs=86.4
Q ss_pred cccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCC-----CCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCC
Q 004387 26 PRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDS-----WPGMWDISSAGHISAGDSSLISAQRELQEELGINLPK 100 (757)
Q Consensus 26 ~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~-----~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~ 100 (757)
.|..+++.+ +|.|+.+++.+++|+|++.-.. .. .+-.|++| +|.+++||++.+||+||+.||||+.+
T Consensus 42 ~~~vv~~~~----~V~il~~~~~~~~vlLvrQyR~-~~~~~~~~~~~lE~P-AG~vd~gE~p~~aA~REL~EETGy~a-- 113 (202)
T PRK10729 42 RREIFERGH----AAVLLPFDPVRDEVVLIEQIRI-AAYDTSETPWLLEMV-AGMIEEGESVEDVARREAIEEAGLIV-- 113 (202)
T ss_pred eEEEEEcCC----eEEEEEEECCCCEEEEEEeeec-ccccCCCCCeEEEcc-ceEcCCCCCHHHHHHHHHHHHhCcee--
Confidence 344454444 6777778743468888744221 11 23579998 99999999999999999999999985
Q ss_pred CceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCC-CccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 101 DAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIP-LEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 101 ~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~-~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
..+..++.+... .| ...+..++|+++...... ......+++|..++.|++++++.+++..+
T Consensus 114 ~~~~~l~~~~~s----pg--~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G 175 (202)
T PRK10729 114 GRTKPVLSYLAS----PG--GTSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEG 175 (202)
T ss_pred eEEEEEEEEEcC----CC--cCceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcC
Confidence 346666655431 12 235678999998532111 01123455677789999999999998764
No 80
>PRK08999 hypothetical protein; Provisional
Probab=99.15 E-value=3.2e-10 Score=123.23 Aligned_cols=107 Identities=25% Similarity=0.333 Sum_probs=74.8
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
.+.+++++ .++++||+||... ..++|+|++| ||+++.||++.+|+.||++||||+.+.. ...+....+ ..+..
T Consensus 7 ~~~~vi~~-~~~~vLL~kR~~~-~~~~g~w~~P-gG~ve~gE~~~~aa~RE~~EE~Gl~~~~--~~~l~~~~h--~~~~~ 79 (312)
T PRK08999 7 VAAGVIRD-ADGRILLARRPEG-KHQGGLWEFP-GGKVEPGETVEQALARELQEELGIEVTA--ARPLITVRH--DYPDK 79 (312)
T ss_pred EEEEEEEC-CCCeEEEEEecCC-CCCCCeEECC-ccCCCCCCCHHHHHHHHHHHHhCCceec--ceeEEEEEE--EcCCC
Confidence 34444555 4689999999765 4689999998 9999999999999999999999998643 233333322 12221
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
....++|.+..... .++..|..+++|++++++.+
T Consensus 80 ----~~~i~~y~~~~~~~------~~~~~e~~~~~Wv~~~el~~ 113 (312)
T PRK08999 80 ----RVRLDVRRVTAWQG------EPHGREGQPLAWVAPDELAV 113 (312)
T ss_pred ----eEEEEEEEEEEecC------cccCccCCccEEecHHHccc
Confidence 23456676654322 22345778899999999855
No 81
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.14 E-value=4.6e-10 Score=104.87 Aligned_cols=100 Identities=23% Similarity=0.260 Sum_probs=74.1
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCc
Q 004387 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (757)
Q Consensus 40 v~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~ 119 (757)
|.++++. ++++||.++.. +.|.+| ||++++||++.+||+||++||||+.+ ..+..++.+..... .
T Consensus 3 v~vi~~~--~~~vLl~~~~~------~~w~lP-gG~ve~gE~~~~aa~REl~EE~G~~~--~~~~~l~~~~~~~~---~- 67 (118)
T cd04665 3 VLVICFY--DDGLLLVRHKD------RGWEFP-GGHVEPGETIEEAARREVWEETGAEL--GSLTLVGYYQVDLF---E- 67 (118)
T ss_pred EEEEEEE--CCEEEEEEeCC------CEEECC-ccccCCCCCHHHHHHHHHHHHHCCcc--CceEEEEEEEecCC---C-
Confidence 4555565 57899998752 579998 99999999999999999999999986 45677777654321 1
Q ss_pred ccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHH
Q 004387 120 FINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEY 160 (757)
Q Consensus 120 ~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL 160 (757)
......+|.+....... .....|+....|++....
T Consensus 68 --~~~~~~~y~a~~~~~~~----~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 68 --SGFETLVYPAVSAQLEE----KASYLETDGPVLFKNEPE 102 (118)
T ss_pred --CcEEEEEEEEEEEeccc----ccccccccCcEEeccCCc
Confidence 23456788887754432 223479999999997655
No 82
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.14 E-value=1.3e-09 Score=110.29 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=87.4
Q ss_pred cccccccCCceeEEEEEEEEecCCCEEEEEEeCCCCCC------CCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccC
Q 004387 26 PRSEVHRVGDYHRTVNAWIFAESTQELLLQRRADFKDS------WPGMWDISSAGHISAGDSSLISAQRELQEELGINLP 99 (757)
Q Consensus 26 ~R~~~h~~g~~hrav~viV~n~~~g~ILL~rRs~~k~~------~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~ 99 (757)
.|..+++.+ +|.++++++.+++++|+|.=.. .. .+-.|++| +|.++.| ++++||+||+.||||..+
T Consensus 38 ~r~vv~~~~----~v~Vl~~~~~~~~vvLvrQyR~-~v~~~~~~~~~~lElP-AG~vd~~-~p~~aA~REL~EETGy~a- 109 (191)
T PRK15009 38 KREVYDRGN----GATILLYNAKKKTVVLIRQFRV-ATWVNGNESGQLIETC-AGLLDND-EPEVCIRKEAIEETGYEV- 109 (191)
T ss_pred EEEEEEECC----EEEEEEEECCCCEEEEEEcccc-cccccCCCCceEEEEe-ccccCCC-CHHHHHHHHHHHhhCCcc-
Confidence 455555544 6778888754678888754322 22 33479998 9999976 799999999999999985
Q ss_pred CCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 100 KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 100 ~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
..+..++.+.. +.| ...+..++|.++.............++|.-++.|+|++++.+++.++
T Consensus 110 -~~~~~l~~~~~----spG--~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G 170 (191)
T PRK15009 110 -GEVRKLFELYM----SPG--GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTG 170 (191)
T ss_pred -ceEEEeeEEEc----CCc--ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcC
Confidence 45777766532 122 24567899999863221111112345677889999999999998764
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.12 E-value=8.8e-11 Score=122.80 Aligned_cols=119 Identities=20% Similarity=0.320 Sum_probs=85.4
Q ss_pred ccccccCCcee-----EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCC
Q 004387 27 RSEVHRVGDYH-----RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKD 101 (757)
Q Consensus 27 R~~~h~~g~~h-----rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~ 101 (757)
+..|..+|..| -++-+++.+ ++++||.++.. +++|+++.- +|+||+|||+++|+.||++||+||.+.
T Consensus 129 ~~~C~~cg~~~fPR~dP~vIv~v~~--~~~ilLa~~~~---h~~g~yS~L-AGFVE~GETlE~AV~REv~EE~Gi~V~-- 200 (279)
T COG2816 129 ARVCPKCGHEHFPRIDPCVIVAVIR--GDEILLARHPR---HFPGMYSLL-AGFVEPGETLEQAVAREVFEEVGIKVK-- 200 (279)
T ss_pred eeeCCCCCCccCCCCCCeEEEEEec--CCceeecCCCC---CCCcceeee-eecccCCccHHHHHHHHHHHhhCeEEe--
Confidence 44555666544 344444444 56688887765 348999996 999999999999999999999999964
Q ss_pred ceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 102 AFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 102 ~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
+++++++..+ +++. .+..-|.+...++ +|++++.|+++.+||+.+|+...+.
T Consensus 201 ~vrY~~SQPW--PfP~------SLMigf~aey~sg----eI~~d~~Eleda~WFs~~evl~~L~ 252 (279)
T COG2816 201 NVRYVGSQPW--PFPH------SLMLGFMAEYDSG----EITPDEGELEDARWFSRDEVLPALP 252 (279)
T ss_pred eeeEEeccCC--CCch------hhhhhheeeeccc----cccCCcchhhhccccCHhHHhhhcC
Confidence 4666654433 2232 2444566666544 3688889999999999999666554
No 84
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.03 E-value=2.9e-09 Score=99.42 Aligned_cols=53 Identities=26% Similarity=0.345 Sum_probs=42.1
Q ss_pred EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEE
Q 004387 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFV 106 (757)
Q Consensus 51 ~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v 106 (757)
.+||.+|... .++|.|.+| ||++++|||+.+||.||++||||+.+....+..+
T Consensus 16 ~~lL~~r~~~--~~~~~w~lP-gG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~~~ 68 (118)
T cd04674 16 GLLVIRRGIE--PGRGKLALP-GGFIELGETWQDAVARELLEETGVAVDPADIRLF 68 (118)
T ss_pred CEEEEEeecC--CCCCeEECC-ceecCCCCCHHHHHHHHHHHHHCCcccccEEEEE
Confidence 4666666543 357999998 9999999999999999999999998754334433
No 85
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.88 E-value=2.5e-09 Score=112.15 Aligned_cols=134 Identities=19% Similarity=0.286 Sum_probs=81.2
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDG 118 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g 118 (757)
+|-++|++++..++||. |.. +.-||+|+.+ +|++|+|||++||++||++||+|++|.. +..+..- ..+..+.
T Consensus 189 vVIm~li~~d~~~~LL~-R~~--r~~~gl~t~l-AGFlEpGES~eeav~REtwEEtGi~V~~--I~~~asQ--PWP~~p~ 260 (345)
T KOG3084|consen 189 VVIMLLIDHDGKHALLG-RQK--RYPPGLWTCL-AGFLEPGESIEEAVRRETWEETGIEVEV--ISYVASQ--PWPLMPQ 260 (345)
T ss_pred eEEEEEEcCCCCEeeee-ccc--CCCCchhhhh-hccCCccccHHHHHHHHHHHHhCceeee--EeeeecC--CCCCCch
Confidence 56666677433356665 433 4568999998 9999999999999999999999999742 3322111 1110011
Q ss_pred cccceEEEEEEEEEEeCCCCCccccCCcc-ccccEEEEcHHHHHHHHhc-CCC--------CcccCCCCCchHHHHHHHH
Q 004387 119 KFINNEFADVYLVTTLNPIPLEAFTLQQT-EVSAVKYIAYEEYKNLLAK-DDP--------SFVPYDVNGGYGQLFNIIS 188 (757)
Q Consensus 119 ~~~~~ei~~vy~~~~~~~~~~~~i~~~~~-Ev~e~~Wvs~~EL~~~l~~-~~~--------~f~p~~~~~~~~~~f~~l~ 188 (757)
.+ + +..+.+ .... .++..+.+ |.++.+|++.+++.+.+.. +.. .+.|. ...+++..+.
T Consensus 261 SL----M--Igc~al-a~~~-~~I~vd~dlEleDaqwF~r~ev~~aL~~kg~~Rv~~~~a~i~~P~----~~aIA~qLI~ 328 (345)
T KOG3084|consen 261 SL----M--IGCLAL-AKLN-GKISVDKDLELEDAQWFDREEVKSALTTKGLVRVQIEKALILIPP----PFAIAHQLIL 328 (345)
T ss_pred HH----H--HHHHHH-HhhC-CccccCcchhhhhcccccHHHHHHHHHhcCCccccccCcceecCC----hhHHHHHHHH
Confidence 00 0 000000 0010 23466666 9999999999999998762 211 23333 4556666666
Q ss_pred HHhh
Q 004387 189 QRYK 192 (757)
Q Consensus 189 ~~~~ 192 (757)
.++.
T Consensus 329 ~~~~ 332 (345)
T KOG3084|consen 329 HWVG 332 (345)
T ss_pred HHHc
Confidence 6653
No 86
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.88 E-value=1.1e-08 Score=102.59 Aligned_cols=42 Identities=29% Similarity=0.535 Sum_probs=37.3
Q ss_pred EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCcc
Q 004387 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98 (757)
Q Consensus 51 ~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v 98 (757)
++|+.+|+. +|.|.+| ||++++|||+.+||.||++||||+.+
T Consensus 50 ~vLl~~r~~-----~g~walP-GG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPD-----SGEWAIP-GGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCC-----CCcCcCC-eeeccCCCCHHHHHHHHHHHHHcccc
Confidence 588888854 4899999 99999999999999999999997653
No 87
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.80 E-value=3.7e-08 Score=92.25 Aligned_cols=118 Identities=20% Similarity=0.331 Sum_probs=68.6
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHH-HHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLI-SAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~e-AAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
++.+++.....+++|+.+|.... |.|.+| ||+++.||++.+ ||+||++||||+.+....+..++.+........
T Consensus 13 ~~~~~~~~~~~~~vl~~~~~~~~----~~~~~P-gG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~ 87 (161)
T COG0494 13 AVAVLVGRDGPGEVLLAQRRDDG----GLWELP-GGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGS 87 (161)
T ss_pred eEEEEEecCCCCEEeEEEccccC----CceecC-CcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcc
Confidence 44444444222789999887753 699998 999999999988 999999999999865313444444432211110
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCC---ccccccEEEEcHHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQ---QTEVSAVKYIAYEEYKNL 163 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~---~~Ev~e~~Wvs~~EL~~~ 163 (757)
. .........+..... ......+... ..|...+.|++++++...
T Consensus 88 ~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 134 (161)
T COG0494 88 S-VGGREHRVFFVAEVD-DSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134 (161)
T ss_pred c-ccceEEEEEEeeecc-ccccccccccCCCcchhhceeeeeHHHcccc
Confidence 0 000111112222111 0010011111 258899999999998654
No 88
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=98.77 E-value=6.5e-08 Score=91.29 Aligned_cols=51 Identities=29% Similarity=0.377 Sum_probs=39.1
Q ss_pred EEEEEEecCCC--EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCcc
Q 004387 40 VNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINL 98 (757)
Q Consensus 40 v~viV~n~~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v 98 (757)
+.+++.+ .++ +||+.|++. +.|.+| ||++++|||+.+||+||++||||+.+
T Consensus 3 ~~~~~~~-~~~~~~ll~~r~~~------~~~~lP-gG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRR-NGEVLELLVFEHPL------AGFQIV-KGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEe-CCceEEEEEEEcCC------CcEECC-CccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3444544 233 566665432 459998 99999999999999999999999985
No 89
>PLN03143 nudix hydrolase; Provisional
Probab=98.71 E-value=1.7e-07 Score=100.24 Aligned_cols=148 Identities=21% Similarity=0.279 Sum_probs=86.7
Q ss_pred EcCCCCcccccccccccc--cCCc------e-e-EEEEEEEEecCCCE--EEEEEeCCCCCCCCCCeeeccccccCCC-C
Q 004387 14 LTMTGQKTGITKPRSEVH--RVGD------Y-H-RTVNAWIFAESTQE--LLLQRRADFKDSWPGMWDISSAGHISAG-D 80 (757)
Q Consensus 14 vd~~~~~~G~~~~R~~~h--~~g~------~-h-rav~viV~n~~~g~--ILL~rRs~~k~~~pG~W~lPvGG~ve~G-E 80 (757)
||-.|+.+|..+-|...- ..|. + | .+|+|+++...+++ ++|+++... ....-.|++| ||.+|++ |
T Consensus 95 vd~fg~~~gflkv~~d~~~l~~G~~~~~~v~~rg~aVaVL~~l~~~ge~~VlLVrQ~R~-pvg~~~lE~P-AG~lD~~~e 172 (291)
T PLN03143 95 VDMFGKRIGFLKFKADIIDKETGQKVPGIVFARGPAVAVLILLESEGETYAVLTEQVRV-PVGKFVLELP-AGMLDDDKG 172 (291)
T ss_pred EecccCceeEEEEEEEEEECCCCCEeeEEEEEcCCeEEEEEEEeCCCCEEEEEEEeEec-CCCcEEEEec-ccccCCCCC
Confidence 566666677644444333 2331 1 1 25666655212444 778766542 1233589998 9999985 8
Q ss_pred CHHHHHHHHHHHHhCCccCCCceEEEEEEEe-----eeecCCCcccceEEEEEEEEEEeCCCC-C----c--cccCCccc
Q 004387 81 SSLISAQRELQEELGINLPKDAFEFVFTFLQ-----QNVINDGKFINNEFADVYLVTTLNPIP-L----E--AFTLQQTE 148 (757)
Q Consensus 81 t~~eAAiREl~EEtGI~v~~~~L~~v~~~~~-----~~~~~~g~~~~~ei~~vy~~~~~~~~~-~----~--~i~~~~~E 148 (757)
++.+||+||++||||+.+...++..+..+.. ......| ...+..++|.+....+.. . . .-..+++|
T Consensus 173 dp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG--~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE 250 (291)
T PLN03143 173 DFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPG--GCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGE 250 (291)
T ss_pred CHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCC--ccCCeEEEEEEccccchhhhcccccccCCCCCCCc
Confidence 9999999999999999865455665542110 0011122 134556777765422110 0 0 00124467
Q ss_pred cccEEEEcHHHHHHHHh
Q 004387 149 VSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 149 v~e~~Wvs~~EL~~~l~ 165 (757)
..++.|++++++.+++.
T Consensus 251 ~Iev~~vpl~eiw~~~a 267 (291)
T PLN03143 251 LIKVHVVPYRELWRMTA 267 (291)
T ss_pred EEEEEEEEHHHHHHHHH
Confidence 77899999999987754
No 90
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.69 E-value=5.9e-08 Score=98.36 Aligned_cols=118 Identities=17% Similarity=0.180 Sum_probs=79.2
Q ss_pred eeEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeeccccccCCCC-CHHHHHHHHHHHHhCCccCCCceEEEEEEEee
Q 004387 36 YHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGD-SSLISAQRELQEELGINLPKDAFEFVFTFLQQ 112 (757)
Q Consensus 36 ~hrav~viV~n~~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~GE-t~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~ 112 (757)
...+|-+.+++..++ +|||+||+.+.+.++|.-.+| ||.++.++ |-..||+||..||.|++. ..+..++.....
T Consensus 42 ~~~aVlI~L~~~~~~~l~vLltkRSr~LrshsGev~fP-GG~~d~~D~s~~~tAlREt~EEIGl~~--~~~~~~g~l~~~ 118 (246)
T KOG3069|consen 42 RKAAVLIPLVQVGSGELSVLLTKRSRTLRSHSGEVCFP-GGRRDPHDKSDIQTALRETEEEIGLDP--ELVDVLGALPPF 118 (246)
T ss_pred CCccEEEEEEEcCCCceEEEEEeccccccccCCceeCC-CCcCCccccchHHHHHHHHHHHhCCCH--HHhhhhhhccce
Confidence 445677777774233 699999999999999999999 99999875 667899999999999984 233344433221
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 113 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 113 ~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.. ..+ + -+..+++.+....-.....++++|+.++.|+|++++..
T Consensus 119 ~~-r~~-~----~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 119 VL-RSG-W----SVFPVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred ee-ccC-c----ccceeEEEEecccccccccCCchheeeeeeeeHHHHhh
Confidence 11 111 1 11222222211100023478899999999999999965
No 91
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.61 E-value=1.5e-07 Score=88.98 Aligned_cols=117 Identities=15% Similarity=0.206 Sum_probs=72.1
Q ss_pred eeEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEE-ee
Q 004387 36 YHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFL-QQ 112 (757)
Q Consensus 36 ~hrav~viV~n~~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~-~~ 112 (757)
...+++|+.+...+. +|||+.-+.. |..|.+| +||+|++|+..+||+||+.||+|+.-.. .+.++.+. +.
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~----~~~wi~P-KGGwE~dE~~~eAA~REt~EEAGv~G~l--~~~~~g~~~~~ 80 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKK----PHRWIVP-KGGWEPDESVEEAALRETWEEAGVKGKL--GRLLGGFEDFL 80 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCC----CCCccCC-CCCCCCCCCHHHHHHHHHHHHhCceeee--eccccchhhcc
Confidence 455677777764344 7999865543 5789998 9999999999999999999999997432 12233332 21
Q ss_pred eecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHHh
Q 004387 113 NVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 113 ~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
..... ...-.+.|.+....... ...-...|..+.+|+.++|..+..+
T Consensus 81 ~~~~~----~~~k~~~~~l~v~e~le--~wp~~~~~~r~r~W~~ledA~~~~~ 127 (145)
T KOG2839|consen 81 SKKHR----TKPKGVMYVLAVTEELE--DWPESEHEFREREWLKLEDAIELCQ 127 (145)
T ss_pred Chhhc----ccccceeehhhhhhhcc--cChhhhcccceeEEeeHHHHHHHHh
Confidence 11111 11123445444322211 0011223588999999999988765
No 92
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=1.9e-08 Score=105.93 Aligned_cols=116 Identities=22% Similarity=0.334 Sum_probs=81.4
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
..++.+|+|. +++||+++........+|.|.+| +|.|++||++.++|+||++||||++.... .+..+...+.
T Consensus 116 vgvg~~V~n~-~~eVlVv~e~d~~~~~~~~wK~p-tG~v~~~e~i~~gavrEvkeetgid~ef~---eVla~r~~H~--- 187 (295)
T KOG0648|consen 116 VGVGAFVLNK-KKEVLVVQEKDGAVKIRGGWKLP-TGRVEEGEDIWHGAVREVKEETGIDTEFV---EVLAFRRAHN--- 187 (295)
T ss_pred eeeeeeEecC-CceeEEEEecccceeeccccccc-ceEecccccchhhhhhhhHHHhCcchhhh---hHHHHHhhhc---
Confidence 3489999995 57999998767767779999999 88999999999999999999999975432 2222222111
Q ss_pred Ccccce-EEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHHHH
Q 004387 118 GKFINN-EFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 118 g~~~~~-ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~~l 164 (757)
..+ .. .-..+|.|.+ .+. ...+..++.|+.++.||+++++..+.
T Consensus 188 ~~~-~~~ksd~f~~c~L-~p~-s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 188 ATF-GLIKSDMFFTCEL-RPR-SLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred chh-hcccccceeEEEe-ecc-ccccchhHHHHHHHhcccHHHhhccc
Confidence 111 11 1223344444 332 24567788999999999999987653
No 93
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.40 E-value=5.1e-06 Score=76.23 Aligned_cols=102 Identities=16% Similarity=0.249 Sum_probs=66.9
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
+.+.++++. ++|++||+||... ..|+|+|++| +|.++.+|+..++..|++.+|.++.. ..++.+.+. .+.
T Consensus 3 ~~~~~~ii~-~~~~~ll~kR~~~-gl~~glwefP-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~H~--fth 72 (118)
T cd03431 3 RGIAVVVIR-NDGRVLLEKRPEK-GLLAGLWEFP-SVEWEEEADGEEALLSALKKALRLSL-----EPLGTVKHT--FTH 72 (118)
T ss_pred EEEEEEEEe-cCCeEEEEECCCC-CCCCcceeCC-CccccCCcCHHHHHHHHHHHHhCccc-----ccceeEEEe--cCC
Confidence 333444444 3689999999754 7889999999 99999999999999999999876411 112222221 111
Q ss_pred CcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 118 GKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 118 g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+-..++|.+...... .+..+++|++++++.+
T Consensus 73 ----~~~~~~~~~~~~~~~~---------~~~~~~~W~~~eel~~ 104 (118)
T cd03431 73 ----FRLTLHVYLARLEGDL---------LAPDEGRWVPLEELDE 104 (118)
T ss_pred ----eEEEEEEEEEEEeCCC---------cCccccEEccHHHHhh
Confidence 1224566666543210 2456789999999965
No 94
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=97.91 E-value=0.00019 Score=71.21 Aligned_cols=117 Identities=23% Similarity=0.150 Sum_probs=67.5
Q ss_pred EEEEEEecCCC--EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCC
Q 004387 40 VNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVIND 117 (757)
Q Consensus 40 v~viV~n~~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~ 117 (757)
|+++.+-+.+| .++|++.-+. ....=-.++| +|-++.|||+..||+||++||||+.-. +.......+- ..
T Consensus 76 VaIl~il~~dG~~~ivL~kQfRp-P~Gk~ciElP-AGLiD~ge~~~~aAiREl~EEtGy~gk---v~~~s~~~f~---DP 147 (225)
T KOG3041|consen 76 VAILAILESDGKPYIVLVKQFRP-PTGKICIELP-AGLIDDGEDFEGAAIRELEEETGYKGK---VDMVSPTVFL---DP 147 (225)
T ss_pred EEEEEEEecCCcEEEEEEEeecC-CCCcEEEEcc-cccccCCCchHHHHHHHHHHHhCccce---eeeccccEEc---CC
Confidence 34433333466 4666644221 2222357888 999999999999999999999999722 1221111111 11
Q ss_pred Cccc-ceEEEEEEEEEEeCCCCCcc-ccCCccccccEEEEcHHHHHHHHh
Q 004387 118 GKFI-NNEFADVYLVTTLNPIPLEA-FTLQQTEVSAVKYIAYEEYKNLLA 165 (757)
Q Consensus 118 g~~~-~~ei~~vy~~~~~~~~~~~~-i~~~~~Ev~e~~Wvs~~EL~~~l~ 165 (757)
| +. .+....++.+..+.+.+..+ ..+.+.|.-+...++..+|.+.+.
T Consensus 148 G-ltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~~ 196 (225)
T KOG3041|consen 148 G-LTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWRELA 196 (225)
T ss_pred C-CCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHHH
Confidence 2 21 23334444444332222111 124557889999999999987654
No 95
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.87 E-value=5e-05 Score=70.01 Aligned_cols=89 Identities=22% Similarity=0.380 Sum_probs=59.3
Q ss_pred CCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEE-------------
Q 004387 65 PGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLV------------- 131 (757)
Q Consensus 65 pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~------------- 131 (757)
-|.|.+| -|....||+++.||+||..||+||.++ ..+..++.+.+ ++|. ++..|-+
T Consensus 35 ~GAWSIP-KGey~~gEdp~~AArREf~EE~Gi~vd-GP~~~lG~~kQ----~GGK-----vVta~~veae~Dva~~rSnt 103 (161)
T COG4119 35 DGAWSIP-KGEYTGGEDPWLAARREFSEEIGICVD-GPRIDLGSLKQ----SGGK-----VVTAFGVEAELDVADARSNT 103 (161)
T ss_pred CCccccc-ccccCCCcCHHHHHHHHhhhhhceeec-Cchhhhhhhcc----CCCc-----EEEEEeeeeeeehhhhhcce
Confidence 4899999 999999999999999999999999874 23444454433 2221 2233322
Q ss_pred ---EEeCCCCCccccCCc-cccccEEEEcHHHHHHHHhcCC
Q 004387 132 ---TTLNPIPLEAFTLQQ-TEVSAVKYIAYEEYKNLLAKDD 168 (757)
Q Consensus 132 ---~~~~~~~~~~i~~~~-~Ev~e~~Wvs~~EL~~~l~~~~ 168 (757)
+.+... . .... .|++...||++.+....+.+++
T Consensus 104 Fe~eWPprS--G--~M~~FPEVDRagWF~l~eAr~Kil~gQ 140 (161)
T COG4119 104 FELEWPPRS--G--KMRKFPEVDRAGWFPLAEARTKILKGQ 140 (161)
T ss_pred eeeecCCCC--C--ccccCcccccccceecHHHHhHHhhcc
Confidence 221110 0 1111 5899999999999987766544
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.34 E-value=0.00055 Score=63.16 Aligned_cols=101 Identities=20% Similarity=0.278 Sum_probs=54.3
Q ss_pred EEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCccc
Q 004387 42 AWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFI 121 (757)
Q Consensus 42 viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~ 121 (757)
+++++ .+|++||.||... +.|.|+|++| .--.+ +++..+.+.+.+.+..|+.+... ..++++.+. ++.
T Consensus 2 ~~i~~-~~~~~Ll~kRp~~-gll~GLwefP-~~e~~-~~~~~~~l~~~~~~~~~~~~~~~--~~~~~v~H~--fSH---- 69 (114)
T PF14815_consen 2 LLIIR-SQGRVLLEKRPEK-GLLAGLWEFP-LIESD-EEDDEEELEEWLEEQLGLSIRSV--EPLGTVKHV--FSH---- 69 (114)
T ss_dssp EEEEE-TTSEEEEEE--SS-STTTT-EE---EEE-S-SS-CHHHHHHHTCCSSS-EEEE---S-SEEEEEE---SS----
T ss_pred EEEEE-eCCEEEEEECCCC-ChhhcCcccC-EeCcc-CCCCHHHHHHHHHHHcCCChhhh--eecCcEEEE--ccc----
Confidence 34555 5899999999864 7899999999 65555 33335555555666777754321 123333321 121
Q ss_pred ceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 122 NNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 122 ~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
.+-..++|.+.+..... .+..+..|++++++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~--------~~~~~~~W~~~~~l~~ 102 (114)
T PF14815_consen 70 RRWTIHVYEVEVSADPP--------AEPEEGQWVSLEELDQ 102 (114)
T ss_dssp EEEEEEEEEEEEE-SS------------TTEEEEEGGGGGG
T ss_pred eEEEEEEEEEEecCCCC--------CCCCCcEEEEHHHHhh
Confidence 23356778787754422 1457889999999965
No 97
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=96.59 E-value=0.017 Score=55.86 Aligned_cols=128 Identities=19% Similarity=0.287 Sum_probs=78.9
Q ss_pred ccccccccCCceeEE-EEEEEEecCCCEEEEEEeCCCCC--CCCCCeeeccccccCCCC--CHHHH-----HHHHHHHHh
Q 004387 25 KPRSEVHRVGDYHRT-VNAWIFAESTQELLLQRRADFKD--SWPGMWDISSAGHISAGD--SSLIS-----AQRELQEEL 94 (757)
Q Consensus 25 ~~R~~~h~~g~~hra-v~viV~n~~~g~ILL~rRs~~k~--~~pG~W~lPvGG~ve~GE--t~~eA-----AiREl~EEt 94 (757)
+.|..+..+...... -.|++.+ .++||+..|-.+.. ..-|.+++-+|||+..++ ++.+. +-||+.||.
T Consensus 48 ~rRgdaEeDp~~KQ~IpYvvi~~--edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv 125 (203)
T COG4112 48 KRRGDAEEDPTTKQVIPYVVIMD--EDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEV 125 (203)
T ss_pred HhccccccCccccccccEEEEec--CCEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHh
Confidence 346666666655555 4555555 67999998865421 234788888899998765 34333 669999999
Q ss_pred CCccC-CCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 95 GINLP-KDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 95 GI~v~-~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
++.-. ...+.++|-+.-.+. .-| .-.+..+|.++... .++...+.+.-+++|+...+|..
T Consensus 126 ~vseqd~q~~e~lGlINdd~n-eVg---kVHiG~lf~~~~k~----ndvevKEkd~~~~kwik~~ele~ 186 (203)
T COG4112 126 DVSEQDLQELEFLGLINDDTN-EVG---KVHIGALFLGRGKF----NDVEVKEKDLFEWKWIKLEELEK 186 (203)
T ss_pred CcCHHHhhhheeeeeecCCCc-ccc---eEEEEEEEEeeccc----cceeeeecceeeeeeeeHHHHHH
Confidence 99732 234666665432211 111 12244556555421 12344556778899999999966
No 98
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.055 Score=54.93 Aligned_cols=39 Identities=31% Similarity=0.581 Sum_probs=34.0
Q ss_pred EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhC
Q 004387 51 ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELG 95 (757)
Q Consensus 51 ~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtG 95 (757)
+++.+||+. .|.|.+| ||.+++||-+..+..||+.||.=
T Consensus 140 e~vavkr~d-----~~~WAiP-GGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPD-----NGEWAIP-GGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCC-----CCcccCC-CCcCCchhhhhHHHHHHHHHHHH
Confidence 466677776 3899999 99999999999999999999974
No 99
>COG4227 Antirestriction protein [DNA replication, recombination, and repair]
Probab=92.03 E-value=0.19 Score=52.58 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=44.5
Q ss_pred cchhhhhhhhcccCCCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHHHHHHhcCCCChhhhhHHHH
Q 004387 570 SFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWALKFLIGRDLLPKSLVKSMYV 642 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~~~~~~g~~~t~~~~~~~~~s~~EE~rAd~vglyl~~~ll~~G~~~~~~~~~~y~ 642 (757)
.-+.-|++|||||-+|-...+. ......|+.---+.||.+||+.++++| .+.|+.....+...|+
T Consensus 201 ~~yyaTl~HElghwtgh~~rl~-----rdLs~~~~sr~yA~eel~aEi~a~~~c---~~lgi~p~~~~haayi 265 (316)
T COG4227 201 INYYATLLHELGHWTGHEARLD-----RDLSRAFGSREYAFEELVAEIGAAFLC---ATLGIVPTVRDHAAYI 265 (316)
T ss_pred HhHHHHHHHHhccccCchhhhh-----hhhccccchhHHHHHHHHHHHhhhhee---cccccCCchhhHHHHH
Confidence 3456899999999999633221 233446677778899999999999999 4557654433233444
No 100
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=91.48 E-value=0.94 Score=45.72 Aligned_cols=118 Identities=17% Similarity=0.231 Sum_probs=64.7
Q ss_pred cCCceeEEEEEEEEecCCC--EEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCC-ce---EE
Q 004387 32 RVGDYHRTVNAWIFAESTQ--ELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKD-AF---EF 105 (757)
Q Consensus 32 ~~g~~hrav~viV~n~~~g--~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~-~L---~~ 105 (757)
..|+++-+-+|+++.. .+ .|||.|... ..|.+| ||.+.+||+..++..|.+.+-+|..-... ++ ..
T Consensus 39 ~~GmRrsVe~Vllvh~-h~~PHvLLLq~~~------~~fkLP-Gg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~ 110 (188)
T PF13869_consen 39 KEGMRRSVEGVLLVHE-HGHPHVLLLQIGN------TFFKLP-GGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGEC 110 (188)
T ss_dssp HHSSEEEEEEEEEEEE-TTEEEEEEEEETT------TEEE-S-EEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEE
T ss_pred HhCCceEEEEEEEEec-CCCcEEEEEeccC------ccccCC-ccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCE
Confidence 5788777888888874 45 577777643 368898 99999999999999999999999863221 11 23
Q ss_pred EEEEEeeeec-------CCCcccceEEEEEEEEEEeCCCCCccccCCccccccEEEEcHHHHHH
Q 004387 106 VFTFLQQNVI-------NDGKFINNEFADVYLVTTLNPIPLEAFTLQQTEVSAVKYIAYEEYKN 162 (757)
Q Consensus 106 v~~~~~~~~~-------~~g~~~~~ei~~vy~~~~~~~~~~~~i~~~~~Ev~e~~Wvs~~EL~~ 162 (757)
++.+....-. +..--.-.++..+|.+.+..... +... .-..+.-+++=||-+
T Consensus 111 l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~~~---F~VP--kn~kL~AvPLFeLyd 169 (188)
T PF13869_consen 111 LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEKCL---FAVP--KNMKLVAVPLFELYD 169 (188)
T ss_dssp EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SSEE---EEEE--TTSEEEEEEHHHHTT
T ss_pred EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCCce---EecC--CCCeEEeecHhhhhc
Confidence 3433321100 00000135688899998754321 2222 123445567777744
No 101
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=91.26 E-value=0.81 Score=48.65 Aligned_cols=126 Identities=21% Similarity=0.284 Sum_probs=76.3
Q ss_pred eeEEEEEEEEecCCCEEEEEEe-CCC------CCCCCC-------------------CeeeccccccCCCCCHHHHHHHH
Q 004387 36 YHRTVNAWIFAESTQELLLQRR-ADF------KDSWPG-------------------MWDISSAGHISAGDSSLISAQRE 89 (757)
Q Consensus 36 ~hrav~viV~n~~~g~ILL~rR-s~~------k~~~pG-------------------~W~lPvGG~ve~GEt~~eAAiRE 89 (757)
+|-.|.|+++|.+..++.|+|. ... ....+| ..++ |+|.|+..-+..+-|.||
T Consensus 228 ~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlEL-cag~Vd~p~s~~e~a~~e 306 (405)
T KOG4432|consen 228 CHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLEL-CAGRVDDPFSDPEKAARE 306 (405)
T ss_pred CCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeee-ecccCCCCcccHHHHHHH
Confidence 6889999999965555444321 110 000111 1234 378888888889999999
Q ss_pred HHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeCCCCC--ccccCCccccccEEEEcHHHHHHHHhcC
Q 004387 90 LQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLNPIPL--EAFTLQQTEVSAVKYIAYEEYKNLLAKD 167 (757)
Q Consensus 90 l~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~~~~~--~~i~~~~~Ev~e~~Wvs~~EL~~~l~~~ 167 (757)
..||.|.++.++.++.+..+..-...+ | .....|.+++...... .-=...++|.-+..-+|++++..+.+++
T Consensus 307 ~veecGYdlp~~~~k~va~y~sGVG~S-G-----~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~~~q~ 380 (405)
T KOG4432|consen 307 SVEECGYDLPEDSFKLVAKYISGVGQS-G-----DTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSLYRQH 380 (405)
T ss_pred HHHHhCCCCCHHHHhhhheeecccCCc-C-----CeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHHHhcc
Confidence 999999998877777665543211111 1 1345566666322100 0001234577777789999999988765
Q ss_pred C
Q 004387 168 D 168 (757)
Q Consensus 168 ~ 168 (757)
.
T Consensus 381 ~ 381 (405)
T KOG4432|consen 381 N 381 (405)
T ss_pred C
Confidence 3
No 102
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=88.52 E-value=0.091 Score=56.58 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=64.7
Q ss_pred EEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCc
Q 004387 40 VNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGK 119 (757)
Q Consensus 40 v~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~ 119 (757)
.+..+.++.-.++||++-.. ..-|.+| -|.+...|+-..|++||+.||||.++........+ +.. .
T Consensus 85 ~ga~ild~~~sr~llv~g~q-----a~sw~fp-rgK~~kdesd~~caiReV~eetgfD~skql~~~e~-Ie~--n----- 150 (348)
T KOG2937|consen 85 RGAIILDEKRSRCLLVKGWQ-----ASSWSFP-RGKISKDESDSDCAIREVTEETGFDYSKQLQDNEG-IET--N----- 150 (348)
T ss_pred chHhhhhhhhhhhheeecee-----ccccccc-CccccccchhhhcchhcccchhhcCHHHHhccccC-ccc--c-----
Confidence 44555664345788875432 3459998 99999999999999999999999986421111111 000 0
Q ss_pred ccceEEEEEEEEEEeCCCCCccccC-CccccccEEEEcHHHHHHHH
Q 004387 120 FINNEFADVYLVTTLNPIPLEAFTL-QQTEVSAVKYIAYEEYKNLL 164 (757)
Q Consensus 120 ~~~~ei~~vy~~~~~~~~~~~~i~~-~~~Ev~e~~Wvs~~EL~~~l 164 (757)
+......+|+.-..+... .+.+ --.|++.+.|.-++++....
T Consensus 151 -I~dq~~~~fIi~gvs~d~--~f~~~v~~eis~ihW~~l~~l~~t~ 193 (348)
T KOG2937|consen 151 -IRDQLVRLFIINGVSEDT--NFNPRVRKEISKIHWHYLDHLVPTD 193 (348)
T ss_pred -hhhceeeeeeeccceeee--ecchhhhccccceeeeehhhhcccc
Confidence 112344555552211110 0111 12588999999999996544
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=87.78 E-value=0.79 Score=48.73 Aligned_cols=60 Identities=23% Similarity=0.258 Sum_probs=47.8
Q ss_pred eeccccccCCCCCHHHHHHHHHHHHhCCccCCCceEEEEEEEeeeecCCCcccceEEEEEEEEEEeC
Q 004387 69 DISSAGHISAGDSSLISAQRELQEELGINLPKDAFEFVFTFLQQNVINDGKFINNEFADVYLVTTLN 135 (757)
Q Consensus 69 ~lPvGG~ve~GEt~~eAAiREl~EEtGI~v~~~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~~~~ 135 (757)
++ |||-++..-++.+-|..|+.||.|.++++++|..+.+|..-.+-++ ...++|.+++..
T Consensus 82 el-c~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~------sa~~l~y~ei~e 141 (405)
T KOG4432|consen 82 EL-CAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSG------SAQHLYYAEIDE 141 (405)
T ss_pred ee-eccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEEEeccccCc------cchheeeeecch
Confidence 45 4999999999999999999999999999999999888765432222 256888888754
No 104
>PRK10880 adenine DNA glycosylase; Provisional
Probab=87.20 E-value=3.2 Score=46.20 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=32.7
Q ss_pred EEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhCCc
Q 004387 38 RTVNAWIFAESTQELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELGIN 97 (757)
Q Consensus 38 rav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtGI~ 97 (757)
+...++++. .++++||.||... ..|.|+|++| +. + + .+ .+++..|+.|+.
T Consensus 231 ~~~~~~~~~-~~~~~~l~~r~~~-gl~~gl~~fP-~~--~---~-~~-~~~~~~~~~~~~ 280 (350)
T PRK10880 231 RTGYFLLLQ-HGDEVWLEQRPPS-GLWGGLFCFP-QF--A---D-EE-ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEEEEE-ECCEEEEEECCcc-ChhhccccCC-CC--c---c-hh-hHHHHHHhcCCc
Confidence 344444444 3689999999765 6889999999 42 2 1 11 245566788875
No 105
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=78.17 E-value=0.83 Score=44.60 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=14.8
Q ss_pred chhhhhhhhcccCCCCCC
Q 004387 571 FFTHNICHECCHGIGPHS 588 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk~~ 588 (757)
....|++|||||.+|-.+
T Consensus 106 ~~~~~~~HEiGHaLGL~H 123 (157)
T cd04278 106 DLFSVAAHEIGHALGLGH 123 (157)
T ss_pred hHHHHHHHHhccccccCC
Confidence 356899999999999644
No 106
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=77.59 E-value=0.8 Score=44.64 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.2
Q ss_pred hhhhhhhhcccCCCCCC
Q 004387 572 FTHNICHECCHGIGPHS 588 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~ 588 (757)
+..|++||+||.+|-.+
T Consensus 104 ~~~~~~HEiGHaLGL~H 120 (156)
T cd04279 104 LQAIALHELGHALGLWH 120 (156)
T ss_pred HHHHHHHHhhhhhcCCC
Confidence 45899999999999643
No 107
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=77.03 E-value=0.74 Score=44.93 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=15.5
Q ss_pred cchhhhhhhhcccCCCCCC
Q 004387 570 SFFTHNICHECCHGIGPHS 588 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~ 588 (757)
....+|++|||||.+|-.+
T Consensus 92 ~~~~~~~~HEiGHaLGL~H 110 (165)
T cd04268 92 ARLRNTAEHELGHALGLRH 110 (165)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 3457999999999999644
No 108
>PF14443 DBC1: DBC1
Probab=75.53 E-value=9.6 Score=36.08 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=40.2
Q ss_pred CCCeeec-cccccCCC-CCHHHHHHHHHHHHhCCccCC-CceEEEEEEEeeeecCCCcccceEEEEEEEEE
Q 004387 65 PGMWDIS-SAGHISAG-DSSLISAQRELQEELGINLPK-DAFEFVFTFLQQNVINDGKFINNEFADVYLVT 132 (757)
Q Consensus 65 pG~W~lP-vGG~ve~G-Et~~eAAiREl~EEtGI~v~~-~~L~~v~~~~~~~~~~~g~~~~~ei~~vy~~~ 132 (757)
.|.|+-. =||....+ .++..+|+|-+++-|||+... .++.....++|......+.....+++.+|+-.
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~Ct~W~rf~Ei~Y~R~~~~~~~~~~EivVlFlPd 93 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSNCTQWYRFAEIHYYRPGSDGFPSHQEIVVLFLPD 93 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhhcCccceeeEEEEecCCCCCCCceeEEEEEEecC
Confidence 4677654 25555553 467899999999999999642 34444445555433222222345666666543
No 109
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=73.70 E-value=1 Score=45.17 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=15.6
Q ss_pred cchhhhhhhhcccCCCCCC
Q 004387 570 SFFTHNICHECCHGIGPHS 588 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~ 588 (757)
.+..+|++||+||.+|-.+
T Consensus 111 ~~~~~t~~HEiGHaLGL~H 129 (186)
T cd04277 111 SYGYQTIIHEIGHALGLEH 129 (186)
T ss_pred hhhHHHHHHHHHHHhcCCC
Confidence 4557999999999999644
No 110
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=73.70 E-value=0.98 Score=43.48 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.1
Q ss_pred cchhhhhhhhcccCCCCCC
Q 004387 570 SFFTHNICHECCHGIGPHS 588 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~ 588 (757)
.....|++||+||.+|=.+
T Consensus 103 ~~~~~v~~HEiGHaLGL~H 121 (154)
T PF00413_consen 103 NDLQSVAIHEIGHALGLDH 121 (154)
T ss_dssp EEHHHHHHHHHHHHTTBES
T ss_pred hhhhhhhhhccccccCcCc
Confidence 3456899999999999644
No 111
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=70.52 E-value=9.9 Score=37.49 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=42.0
Q ss_pred cCCceeEEEEEEEEecCC-CEEEEEEeCCCCCCCCCCeeeccccccCCCCCHHHHHHHHHHHHhC
Q 004387 32 RVGDYHRTVNAWIFAEST-QELLLQRRADFKDSWPGMWDISSAGHISAGDSSLISAQRELQEELG 95 (757)
Q Consensus 32 ~~g~~hrav~viV~n~~~-g~ILL~rRs~~k~~~pG~W~lPvGG~ve~GEt~~eAAiREl~EEtG 95 (757)
..|+++.+-+++++.+.. -.|||.|-.. -.+.+| ||.+++||+-.+...|-+-|-+|
T Consensus 65 k~gmRrsvegvlivheH~lPHvLLLQig~------tf~KLP-GG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 65 KEGMRRSVEGVLIVHEHNLPHVLLLQIGN------TFFKLP-GGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred hhhhhheeeeeEEEeecCCCeEEEEeeCC------EEEecC-CCccCCCcchhHHHHHHHHHHhc
Confidence 356666777777777321 2566654322 356677 99999999999999999999999
No 112
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=68.14 E-value=21 Score=37.57 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=34.8
Q ss_pred EEEEEeCCCCCCCCCCeeecccccc-CCCCCHHHHHHHHHHHHhCCc
Q 004387 52 LLLQRRADFKDSWPGMWDISSAGHI-SAGDSSLISAQRELQEELGIN 97 (757)
Q Consensus 52 ILL~rRs~~k~~~pG~W~lPvGG~v-e~GEt~~eAAiREl~EEtGI~ 97 (757)
+||++|..++ .+.|-+| -+-. +.|+++..+|.|++++-.|-.
T Consensus 141 yLLV~~k~g~---~s~w~fP-~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 141 YLLVKRKFGK---SSVWIFP-NRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEeeccCc---cceeeCC-CcccCCccchHHHHHHHHHHHHhcch
Confidence 6677766554 3699999 7777 999999999999999998865
No 113
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=67.65 E-value=1.6 Score=41.60 Aligned_cols=15 Identities=27% Similarity=0.299 Sum_probs=12.8
Q ss_pred hhhhhhcccCCCCCC
Q 004387 574 HNICHECCHGIGPHS 588 (757)
Q Consensus 574 ~v~lHElgHg~Gk~~ 588 (757)
.|++||+||.+|-.+
T Consensus 88 ~~~~HEigHaLGl~H 102 (140)
T smart00235 88 GVAAHELGHALGLYH 102 (140)
T ss_pred ccHHHHHHHHhcCCc
Confidence 499999999999644
No 114
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=66.26 E-value=1.9 Score=41.97 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.3
Q ss_pred cchhhhhhhhcccCCCCCC
Q 004387 570 SFFTHNICHECCHGIGPHS 588 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~ 588 (757)
.....|+.|||||.+|-.+
T Consensus 94 ~~~~~~~~HElGH~LGl~H 112 (167)
T cd00203 94 KEGAQTIAHELGHALGFYH 112 (167)
T ss_pred ccchhhHHHHHHHHhCCCc
Confidence 3557899999999999633
No 115
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=58.95 E-value=2.9 Score=42.56 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.7
Q ss_pred chhhhhhhhcccCCCCCC
Q 004387 571 FFTHNICHECCHGIGPHS 588 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk~~ 588 (757)
.+..|++||+||.+|-.+
T Consensus 91 ~~~~~i~HElgHaLG~~H 108 (198)
T cd04327 91 EFSRVVLHEFGHALGFIH 108 (198)
T ss_pred hHHHHHHHHHHHHhcCcc
Confidence 345799999999999744
No 116
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=58.60 E-value=3 Score=44.64 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.7
Q ss_pred chhhhhhhhcccCCCC
Q 004387 571 FFTHNICHECCHGIGP 586 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk 586 (757)
.+.+|+.||+|||.|+
T Consensus 215 ~~~~v~vHE~GHsf~~ 230 (264)
T PF09471_consen 215 SFKQVVVHEFGHSFGG 230 (264)
T ss_dssp THHHHHHHHHHHHTT-
T ss_pred cccceeeeeccccccc
Confidence 5679999999999999
No 117
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=56.43 E-value=3.4 Score=41.64 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=13.5
Q ss_pred cchhhhhhhhcccCCCCC
Q 004387 570 SFFTHNICHECCHGIGPH 587 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~ 587 (757)
.....|+.||+||.+|=.
T Consensus 140 ~~~~~~~AHEiGH~lGa~ 157 (196)
T PF13688_consen 140 YNGAITFAHEIGHNLGAP 157 (196)
T ss_dssp HHHHHHHHHHHHHHTT--
T ss_pred CceehhhHHhHHHhcCCC
Confidence 334689999999999963
No 118
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=54.96 E-value=3.6 Score=38.11 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=11.8
Q ss_pred hhhhhhhcccCCCC
Q 004387 573 THNICHECCHGIGP 586 (757)
Q Consensus 573 ~~v~lHElgHg~Gk 586 (757)
..|..||+||.+|-
T Consensus 108 ~~~~~HEiGH~lGl 121 (124)
T PF13582_consen 108 VDTFAHEIGHNLGL 121 (124)
T ss_dssp TTHHHHHHHHHTT-
T ss_pred ceEeeehhhHhcCC
Confidence 48999999999984
No 119
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=54.09 E-value=25 Score=37.86 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=23.9
Q ss_pred eEEEEEEEEecCCCEEEEEEeCCCCCCCCCCeeec
Q 004387 37 HRTVNAWIFAESTQELLLQRRADFKDSWPGMWDIS 71 (757)
Q Consensus 37 hrav~viV~n~~~g~ILL~rRs~~k~~~pG~W~lP 71 (757)
++...++++...++++|++||... ..+.|+|++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~r~~~-~~~~gl~~~p 259 (275)
T TIGR01084 226 ERTTYFLVLQNYDGEVLLEQRPEK-GLWGGLYCFP 259 (275)
T ss_pred eEEEEEEEEEeCCCeEEEEeCCCC-chhhccccCC
Confidence 344444443324689999999754 6789999999
No 120
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=52.14 E-value=4.9 Score=42.05 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.6
Q ss_pred hhhhhhcccCCCCC
Q 004387 574 HNICHECCHGIGPH 587 (757)
Q Consensus 574 ~v~lHElgHg~Gk~ 587 (757)
.|+.|||||.+|-.
T Consensus 147 ~t~AHElGHnLGm~ 160 (228)
T cd04271 147 QVFAHEIGHTFGAV 160 (228)
T ss_pred eehhhhhhhhcCCC
Confidence 79999999999963
No 121
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=49.20 E-value=5.9 Score=41.85 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.5
Q ss_pred chhhhhhhhcccCCCC
Q 004387 571 FFTHNICHECCHGIGP 586 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk 586 (757)
.+..|+.|||||.+|-
T Consensus 166 ~~a~t~AHElGHnlGm 181 (244)
T cd04270 166 ESDLVTAHELGHNFGS 181 (244)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3457899999999996
No 122
>PRK13910 DNA glycosylase MutY; Provisional
Probab=46.73 E-value=24 Score=38.38 Aligned_cols=29 Identities=10% Similarity=0.250 Sum_probs=21.5
Q ss_pred EEEEEEEecCCCEEEEEEeCCCCCCCCCCeeec
Q 004387 39 TVNAWIFAESTQELLLQRRADFKDSWPGMWDIS 71 (757)
Q Consensus 39 av~viV~n~~~g~ILL~rRs~~k~~~pG~W~lP 71 (757)
...+++++ ++++||+||+ +..|.|+|++|
T Consensus 188 ~~~~~~~~--~~~~ll~kr~--~~l~~gl~~fP 216 (289)
T PRK13910 188 RYLGVVIQ--NNQIALEKIE--QKLYLGMHHFP 216 (289)
T ss_pred EEEEEEEE--CCEEEEEECC--CchhcccccCC
Confidence 33334444 6799999985 46899999999
No 123
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=46.42 E-value=6.5 Score=40.23 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.2
Q ss_pred hhhhhhhhcccCCCCCC
Q 004387 572 FTHNICHECCHGIGPHS 588 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~ 588 (757)
..+++.||+||.+|-.+
T Consensus 116 ~~~~~~he~gh~lGl~h 132 (197)
T cd04276 116 LRYLLAHEVGHTLGLRH 132 (197)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 45899999999999644
No 124
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=45.46 E-value=6.8 Score=40.24 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred hhhhhhhcccCCCCCC
Q 004387 573 THNICHECCHGIGPHS 588 (757)
Q Consensus 573 ~~v~lHElgHg~Gk~~ 588 (757)
.+|..||+||-+|=.+
T Consensus 138 ~~~~aHEiGH~lGl~H 153 (206)
T PF13583_consen 138 YQTFAHEIGHNLGLRH 153 (206)
T ss_pred chHHHHHHHHHhcCCC
Confidence 3778999999999644
No 125
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=43.73 E-value=8.5 Score=39.75 Aligned_cols=16 Identities=44% Similarity=0.545 Sum_probs=13.4
Q ss_pred hhhhhhhhcccCCCCC
Q 004387 572 FTHNICHECCHGIGPH 587 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~ 587 (757)
..||+.|||||-.|--
T Consensus 133 ~~hvi~HEiGH~IGfR 148 (211)
T PF12388_consen 133 IEHVITHEIGHCIGFR 148 (211)
T ss_pred HHHHHHHHhhhhcccc
Confidence 3489999999999953
No 126
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=42.72 E-value=6.4 Score=39.24 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=14.2
Q ss_pred cchhhhhhhhcccCCCCCC
Q 004387 570 SFFTHNICHECCHGIGPHS 588 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~ 588 (757)
.|.++|+.||+||-+|-.+
T Consensus 109 ~~~~~~~aHElGH~lGa~H 127 (173)
T PF13574_consen 109 FFGIDTFAHELGHQLGAPH 127 (173)
T ss_dssp SHHHHHHHHHHHHHHT---
T ss_pred eeeeeeehhhhHhhcCCCC
Confidence 3578999999999999644
No 127
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=42.23 E-value=8.9 Score=38.49 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=13.9
Q ss_pred hhhhhhhhcccCCCCCC
Q 004387 572 FTHNICHECCHGIGPHS 588 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~ 588 (757)
...|+.|||||.+|-.+
T Consensus 133 ~~~~~aHElGH~lG~~H 149 (192)
T cd04267 133 TALTMAHELGHNLGAEH 149 (192)
T ss_pred ehhhhhhhHHhhcCCcC
Confidence 35789999999999643
No 128
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=39.64 E-value=8.7 Score=38.57 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=14.7
Q ss_pred chhhhhhhhcccCCCCCC
Q 004387 571 FFTHNICHECCHGIGPHS 588 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk~~ 588 (757)
+...|++||+||.+|-.+
T Consensus 73 ~~~g~v~HE~~HalG~~H 90 (180)
T cd04280 73 FSLGTIVHELMHALGFYH 90 (180)
T ss_pred CcCchhHHHHHHHhcCcc
Confidence 336899999999999754
No 129
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=37.87 E-value=9.6 Score=38.52 Aligned_cols=18 Identities=28% Similarity=0.301 Sum_probs=14.5
Q ss_pred hhhhhhhhcccCCCCCCc
Q 004387 572 FTHNICHECCHGIGPHSI 589 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~~ 589 (757)
...|++||+||.+|-.+.
T Consensus 77 ~~G~i~HEl~HaLG~~HE 94 (182)
T cd04283 77 YKGIIQHELLHALGFYHE 94 (182)
T ss_pred ccchHHHHHHHHhCCccc
Confidence 357999999999997543
No 130
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=35.11 E-value=9.8 Score=36.10 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=11.6
Q ss_pred hhhhhhhcccCCCC
Q 004387 573 THNICHECCHGIGP 586 (757)
Q Consensus 573 ~~v~lHElgHg~Gk 586 (757)
+.+..||+||-+|-
T Consensus 78 ~RIaaHE~GHiLGL 91 (132)
T PF02031_consen 78 TRIAAHELGHILGL 91 (132)
T ss_dssp HHHHHHHHHHHHT-
T ss_pred ceeeeehhccccCC
Confidence 56899999999994
No 131
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=34.54 E-value=12 Score=38.34 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.1
Q ss_pred hhhhhhhhcccCCCC
Q 004387 572 FTHNICHECCHGIGP 586 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk 586 (757)
.+.|+.|||||.+|-
T Consensus 140 ~a~~~aHElGH~LG~ 154 (207)
T cd04273 140 SAFTIAHELGHVLGM 154 (207)
T ss_pred eEEeeeeechhhcCC
Confidence 368999999999996
No 132
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=34.38 E-value=15 Score=37.07 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=13.1
Q ss_pred hhhhhhhhcccCCCC
Q 004387 572 FTHNICHECCHGIGP 586 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk 586 (757)
.+.|+.|||||-+|-
T Consensus 131 ~a~~~AHElGH~lG~ 145 (194)
T cd04269 131 FAVTMAHELGHNLGM 145 (194)
T ss_pred HHHHHHHHHHhhcCC
Confidence 368999999999996
No 133
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=34.20 E-value=11 Score=38.30 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=13.5
Q ss_pred hhhhhhhhcccCCCCCCc
Q 004387 572 FTHNICHECCHGIGPHSI 589 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~~ 589 (757)
...|++||+||.+|-.+.
T Consensus 79 ~~~~i~HEl~HaLG~~HE 96 (191)
T PF01400_consen 79 SVGTILHELGHALGFWHE 96 (191)
T ss_dssp SHHHHHHHHHHHHTB--G
T ss_pred CccchHHHHHHHHhhhhh
Confidence 456899999999997543
No 134
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=33.57 E-value=13 Score=38.15 Aligned_cols=18 Identities=28% Similarity=0.100 Sum_probs=14.5
Q ss_pred hhhhhhhhcccCCCCCCc
Q 004387 572 FTHNICHECCHGIGPHSI 589 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~~ 589 (757)
...|++|||||.+|-.+.
T Consensus 87 ~~Gti~HEl~HaLGf~HE 104 (200)
T cd04281 87 KFGIVVHELGHVIGFWHE 104 (200)
T ss_pred cCchHHHHHHHHhcCcch
Confidence 357999999999997543
No 135
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=33.57 E-value=12 Score=36.62 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=12.7
Q ss_pred chhhhhhhhcccCCCCCC
Q 004387 571 FFTHNICHECCHGIGPHS 588 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk~~ 588 (757)
....|+.||+||-+|=.+
T Consensus 68 ~~g~TltHEvGH~LGL~H 85 (154)
T PF05572_consen 68 NFGKTLTHEVGHWLGLYH 85 (154)
T ss_dssp -SSHHHHHHHHHHTT---
T ss_pred ccccchhhhhhhhhcccc
Confidence 346899999999999655
No 136
>KOG3675 consensus Dipeptidyl peptidase III [General function prediction only]
Probab=32.52 E-value=22 Score=39.15 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=28.8
Q ss_pred hccCCCHHHH---HHHHHHHHHHhhhchheeeeccCCCh
Q 004387 217 ELAGLSDADK---EALVLVIKAATVMDEIFYLQVWYSNP 252 (757)
Q Consensus 217 df~~Ls~~Ek---~y~~~l~~Aa~~~~~i~~~Q~~~e~~ 252 (757)
.|..+++-++ .|.||+.++.|.++-|..-|+|.+..
T Consensus 22 ~l~~~~p~aan~~~Y~~hf~kgP~~e~~igFIqtyrdp~ 60 (417)
T KOG3675|consen 22 ALKLLSPTAANKMKYVHHFSKGPWYEGLIGFIQTYRDPA 60 (417)
T ss_pred HHHHhChhhhhhhhhhhhhhcCchhhhhhhhhhhccccc
Confidence 4445555554 99999999999999999999996443
No 137
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=32.10 E-value=39 Score=25.46 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=12.2
Q ss_pred ccccCCCCCHHHHHHHHHHHHh
Q 004387 73 AGHISAGDSSLISAQRELQEEL 94 (757)
Q Consensus 73 GG~ve~GEt~~eAAiREl~EEt 94 (757)
||-..+|--+...++||+.||+
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 7778889999999999999996
No 138
>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function. Some are annotated as membrane proteins, however this cannot be confirmed.
Probab=31.11 E-value=18 Score=37.10 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=14.2
Q ss_pred hhhhhhhhcccCCCCCCcc
Q 004387 572 FTHNICHECCHGIGPHSIT 590 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~~~ 590 (757)
..-++-||+||++|-.+..
T Consensus 139 RqYvINHEVGH~LGh~H~~ 157 (203)
T PF11350_consen 139 RQYVINHEVGHALGHGHEP 157 (203)
T ss_pred HHHhhhhhhhhhcccCCCc
Confidence 3456779999999976543
No 139
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=29.92 E-value=20 Score=33.63 Aligned_cols=14 Identities=43% Similarity=0.582 Sum_probs=12.4
Q ss_pred hhhhhhhcccCCCC
Q 004387 573 THNICHECCHGIGP 586 (757)
Q Consensus 573 ~~v~lHElgHg~Gk 586 (757)
.||++||+||--|-
T Consensus 110 thvliHEIgHhFGL 123 (136)
T COG3824 110 THVLIHEIGHHFGL 123 (136)
T ss_pred hhhhhhhhhhhcCC
Confidence 59999999998885
No 140
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=28.79 E-value=2.8e+02 Score=22.90 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhcCCCHHHHHHHHHhhcCCCCcccc
Q 004387 697 ESLSTEILTIQARGDKEAASLLLQKYCTMTQPLKVALQKLENVQVPVDIA 746 (757)
Q Consensus 697 ~~ll~~l~~~k~~gD~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~p~di~ 746 (757)
..+-.--..-|..||.+.|+.+.--.- .+..++.-.+ +|.|||+.
T Consensus 9 ~~yk~Aa~~AK~~gd~~kAr~~~R~~K----~~~~~I~~~~-aG~pVd~~ 53 (59)
T smart00685 9 EQYKQAALQAKRAGDEEKARRHLRIAK----QFDDAIKAAR-AGRPVDLS 53 (59)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh----hHHHHHHHHH-CCCCCChh
Confidence 334444455678999999999755443 4455555445 59999984
No 141
>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily. Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.
Probab=28.70 E-value=17 Score=38.17 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.5
Q ss_pred hhhhhhhhcccCCCCCCc
Q 004387 572 FTHNICHECCHGIGPHSI 589 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~~ 589 (757)
...|++|||||.+|-.+.
T Consensus 120 ~~Gti~HEl~HalGf~HE 137 (230)
T cd04282 120 YKATVEHEFLHALGFYHE 137 (230)
T ss_pred CCchHHHHHHHHhCCccc
Confidence 357899999999997543
No 142
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=27.26 E-value=20 Score=37.06 Aligned_cols=15 Identities=27% Similarity=0.425 Sum_probs=13.2
Q ss_pred hhhhhhhcccCCCCC
Q 004387 573 THNICHECCHGIGPH 587 (757)
Q Consensus 573 ~~v~lHElgHg~Gk~ 587 (757)
+.|+.|||||-+|-.
T Consensus 146 ~~~~AHElGH~lG~~ 160 (220)
T cd04272 146 VYTMTHELAHLLGAP 160 (220)
T ss_pred HHHHHHHHHHHhCCC
Confidence 689999999999963
No 143
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=26.75 E-value=3.9e+02 Score=31.27 Aligned_cols=54 Identities=19% Similarity=0.082 Sum_probs=34.3
Q ss_pred hhhhhhhcccCCCCCCccc-CCcccccccchhh-cccchHHhHHHHHHHHHHH-HHHHh-cCCCCh
Q 004387 573 THNICHECCHGIGPHSITL-PDGRQSTVRLELQ-ELHSAMEEAKADIVGLWAL-KFLIG-RDLLPK 634 (757)
Q Consensus 573 ~~v~lHElgHg~Gk~~~~~-~~g~~~t~~~~~~-~~~s~~EE~rAd~vglyl~-~~ll~-~G~~~~ 634 (757)
+.|+.||+||--.- +. .+-+ ..|. .-..++.|+=||+++|=+. ++.|. .|+++.
T Consensus 248 ~~t~~HE~GH~~yy---~~y~~~p-----~~~r~~anp~fheav~e~~smS~~tpe~L~~~~ll~~ 305 (477)
T cd06461 248 FVTVHHEMGHIQYY---LQYKDQP-----VLFREGANPGFHEAVGDAIALSVSTPKHLHKIGLLDS 305 (477)
T ss_pred HHHHHHHHHHHHHH---HHhccCC-----HHHhCCCCCChHHHHHHHHHHhcCCHHHHhhcccccc
Confidence 35777999998752 11 0111 1232 2236788999999999775 66555 688765
No 144
>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=26.62 E-value=25 Score=36.14 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=13.4
Q ss_pred hhhhhhhhcccCCCC
Q 004387 572 FTHNICHECCHGIGP 586 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk 586 (757)
.++++.||+||.+|.
T Consensus 187 L~~tarhElGhaLgi 201 (236)
T COG5549 187 LNPTARHELGHALGI 201 (236)
T ss_pred hhHHHHHhhcchhee
Confidence 368999999999997
No 145
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=25.76 E-value=21 Score=36.08 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=12.5
Q ss_pred hhhhhhhhcccCCCC
Q 004387 572 FTHNICHECCHGIGP 586 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk 586 (757)
+..+++||+||.+|-
T Consensus 131 ~a~~~AHelGH~lGm 145 (199)
T PF01421_consen 131 FAVIIAHELGHNLGM 145 (199)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcCC
Confidence 458889999999996
No 146
>PHA02943 hypothetical protein; Provisional
Probab=25.18 E-value=4.6e+02 Score=25.95 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=49.3
Q ss_pred ccchhhhHHHHHHHHHHhcCCeEEccCCc--E-EEeHhhHHHHHHHHHHHHHHHHhcCCH---------------HHHHH
Q 004387 656 LEESHGKGQALQFNWLFEKEAFILHSDDT--F-SVDFDKVEGAVESLSTEILTIQARGDK---------------EAASL 717 (757)
Q Consensus 656 ~~qaH~~a~~~i~~~~~e~g~~~~~~~g~--~-~vd~~k~~~av~~ll~~l~~~k~~gD~---------------~~~~~ 717 (757)
.|-+|++|++. +..|...|.+..-+-|. | .+|.++...+|.++.++|..+=++-.. ..|..
T Consensus 34 LGlS~~qa~~~-LyvLErEG~VkrV~~G~~tyw~l~~day~~~v~~~~Relwrlv~s~~~kfi~p~~l~~li~kd~~a~~ 112 (165)
T PHA02943 34 LGVSHSMARNA-LYQLAKEGMVLKVEIGRAAIWCLDEDAYTNLVFEIKRELWRLVCNSRLKFITPSRLLRLIAKDTEAHN 112 (165)
T ss_pred HCCCHHHHHHH-HHHHHHcCceEEEeecceEEEEEChHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHhCHHHHH
Confidence 45567777765 55666677765433353 3 778888888999999999988776543 24567
Q ss_pred HHHHhcCCCHH
Q 004387 718 LLQKYCTMTQP 728 (757)
Q Consensus 718 ~~~~~~~v~~~ 728 (757)
+|.+|-.|+-.
T Consensus 113 ~~ak~v~v~~r 123 (165)
T PHA02943 113 IFAKYVPVNSR 123 (165)
T ss_pred HHHHhcCcccc
Confidence 77777776633
No 147
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=24.92 E-value=42 Score=28.12 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.8
Q ss_pred CCceeEeeeeChHHHHH
Q 004387 452 ATFEAFIGIRDDKATAQ 468 (757)
Q Consensus 452 a~~E~~V~i~d~~~s~k 468 (757)
..|+|+|.|.|++.|+-
T Consensus 30 ~~w~G~v~i~dPe~S~v 46 (64)
T PRK06393 30 TEWFGFLIITEPEGSAI 46 (64)
T ss_pred cCcceEEEEECCchhHH
Confidence 68999999999998754
No 148
>PF02128 Peptidase_M36: Fungalysin metallopeptidase (M36); InterPro: IPR001842 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M36 (fungalysin family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Fungalysin is produced by fungi, Aspergillus and other species, to aid degradation of host lung cell walls on infection. The enzyme is a 42kDa single chain protein, with a pH optimum of 7.5-8.0 and optimal temperature of 60 celcius [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0005615 extracellular space
Probab=24.54 E-value=35 Score=38.35 Aligned_cols=49 Identities=31% Similarity=0.329 Sum_probs=35.8
Q ss_pred cchhhhhhhhcccCCCCCCcccCCcccccccchhhc-ccchHHhHHHHHHHHHHH
Q 004387 570 SFFTHNICHECCHGIGPHSITLPDGRQSTVRLELQE-LHSAMEEAKADIVGLWAL 623 (757)
Q Consensus 570 af~~~v~lHElgHg~Gk~~~~~~~g~~~t~~~~~~~-~~s~~EE~rAd~vglyl~ 623 (757)
+|...|++||.|||+-- .+.+|+.. .+.|+. -+.++=|+=.|.+||.+.
T Consensus 183 ~~D~~Ii~HEy~HGiSn---RLvgG~~~--s~cL~~~e~~~mGEGWsD~~Al~~~ 232 (378)
T PF02128_consen 183 DFDNGIIAHEYGHGISN---RLVGGPAN--SSCLQNLESGGMGEGWSDFFALMMT 232 (378)
T ss_pred ccccCeeEEeecccccc---cccCCCcc--cccccccccCCCcccHHHHHHHHhe
Confidence 78899999999999875 44455421 234543 577888999999998776
No 149
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=22.84 E-value=31 Score=37.94 Aligned_cols=15 Identities=33% Similarity=0.476 Sum_probs=12.4
Q ss_pred hhhhhhcccCCCCCC
Q 004387 574 HNICHECCHGIGPHS 588 (757)
Q Consensus 574 ~v~lHElgHg~Gk~~ 588 (757)
.|.+||+||..|-.+
T Consensus 152 ~~~~HElgHN~GL~H 166 (314)
T PF05548_consen 152 ATIMHELGHNLGLWH 166 (314)
T ss_pred HHHHHHhhhhccccc
Confidence 389999999999643
No 150
>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily. The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.
Probab=22.63 E-value=24 Score=36.92 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=14.1
Q ss_pred hhhhhhhhcccCCCCCC
Q 004387 572 FTHNICHECCHGIGPHS 588 (757)
Q Consensus 572 ~~~v~lHElgHg~Gk~~ 588 (757)
...|+.||+||-+|=.+
T Consensus 137 ~g~t~~HEvGH~lGL~H 153 (225)
T cd04275 137 LGDTATHEVGHWLGLYH 153 (225)
T ss_pred ccceeEEeccceeeeee
Confidence 45789999999999655
No 151
>KOG1565 consensus Gelatinase A and related matrix metalloproteases [Posttranslational modification, protein turnover, chaperones; Extracellular structures]
Probab=22.18 E-value=35 Score=39.67 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=14.6
Q ss_pred chhhhhhhhcccCCCCCC
Q 004387 571 FFTHNICHECCHGIGPHS 588 (757)
Q Consensus 571 f~~~v~lHElgHg~Gk~~ 588 (757)
...+|+.||+||.+|-.+
T Consensus 210 ~l~~Va~HEiGH~LGL~H 227 (469)
T KOG1565|consen 210 DLFLVAAHEIGHALGLGH 227 (469)
T ss_pred hhHHHhhhhcccccccCC
Confidence 345999999999999644
No 152
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=21.37 E-value=1.5e+02 Score=24.29 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=24.4
Q ss_pred HHHHHhhhhcccc--chhccC-CCHHHHHHHHHHHHHHh
Q 004387 202 LQKQLRRYAHVSL--NAELAG-LSDADKEALVLVIKAAT 237 (757)
Q Consensus 202 L~~rl~r~~pv~l--~~df~~-Ls~~Ek~y~~~l~~Aa~ 237 (757)
+++.+..|.--+- .-.|+. ||+.|++++|-|+++--
T Consensus 4 ~~~~i~~F~~~~~~~~l~F~p~ls~~eR~~vH~lA~~~g 42 (60)
T cd02641 4 LKAMVKAFMKDPKATELEFPPTLSSHDRLLVHELAEELG 42 (60)
T ss_pred HHHHHHHHHcCCCcCcEECCCCCCHHHHHHHHHHHHHcC
Confidence 3444444443222 336888 99999999999998743
No 153
>cd06457 M3A_MIP Peptidase M3 mitochondrial intermediate peptidase (MIP; EC 3.4.24.59) belongs to the widespread subfamily M3A, that show similarity to the Thimet oligopeptidase (TOP). It is one of three peptidases responsible for the proteolytic processing of both, nuclear and mitochondrial encoded precursor polypeptides targeted to the various subcompartments of the mitochondria. It cleaves intermediate-size proteins initially processed by mitochondrial processing peptidase (MPP) to yield a processing intermediate with a typical N-terminal octapeptide that is sequentially cleaved by MIP to mature-size protein. MIP cleaves precursor proteins of respiratory components, including subunits of the electron transport chain and tri-carboxylic acid cycle enzymes, and components of the mitochondrial genetic machinery, including ribosomal proteins, translation factors, and proteins required for mitochondrial DNA metabolism. It has been suggested that the human MIP (HMIP polypeptide; gene symbo
Probab=21.03 E-value=28 Score=40.26 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred hhhhhhhcccCCCCCCcccC-----CcccccccchhhcccchHHh
Q 004387 573 THNICHECCHGIGPHSITLP-----DGRQSTVRLELQELHSAMEE 612 (757)
Q Consensus 573 ~~v~lHElgHg~Gk~~~~~~-----~g~~~t~~~~~~~~~s~~EE 612 (757)
+.|++||+||+.=- ++- .-.|..+.--|-++.|.+=|
T Consensus 249 v~TLfHEfGHalH~---~ls~~~~~~~sgt~~~~d~vE~pS~~~E 290 (458)
T cd06457 249 VETLFHEMGHAMHS---MLGRTEYQHVSGTRCATDFVEVPSILME 290 (458)
T ss_pred HHHHHHHHhHHHHH---HHcCCCccccCCCCCCcchhhcCHHHHH
Confidence 57999999999642 221 11232223356778887755
No 154
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=20.40 E-value=33 Score=40.62 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCC--HHHHHHHHHhhcCCCCcc
Q 004387 695 AVESLSTEILTIQARGDKEAASLLLQKYCTMT--QPLKVALQKLENVQVPVD 744 (757)
Q Consensus 695 av~~ll~~l~~~k~~gD~~~~~~~~~~~~~v~--~~~~~~l~~~~~~~~p~d 744 (757)
+++.++..-.--+...|.+.+.+.|.++.... ....+++ +.+||..+
T Consensus 480 ~~a~~~a~~l~~~~~~~~~~~~~~Y~~~L~~Ggs~~~~ell---~~aGid~~ 528 (549)
T TIGR02289 480 TIAQIGALQIYKIYKEDPEKALKDYKKLCSAGGSQSFLELY---ETAGLTFP 528 (549)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHhccCCcCHHHHH---HHhCCCCC
Confidence 34443333333333457788888888776543 2334444 44566665
No 155
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=20.32 E-value=37 Score=35.38 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=12.0
Q ss_pred hhhhhhhcccCCCC
Q 004387 573 THNICHECCHGIGP 586 (757)
Q Consensus 573 ~~v~lHElgHg~Gk 586 (757)
+-|++||+||..=-
T Consensus 90 vaVAAHEvGHAiQ~ 103 (222)
T PF04298_consen 90 VAVAAHEVGHAIQH 103 (222)
T ss_pred HHHHHHHHhHHHhc
Confidence 68999999998654
No 156
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=20.30 E-value=31 Score=30.83 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=27.1
Q ss_pred hhhhhhhcccCCCCCCcccCCcccccccchhhcccchHHhHHHHHHHHHHH
Q 004387 573 THNICHECCHGIGPHSITLPDGRQSTVRLELQELHSAMEEAKADIVGLWAL 623 (757)
Q Consensus 573 ~~v~lHElgHg~Gk~~~~~~~g~~~t~~~~~~~~~s~~EE~rAd~vglyl~ 623 (757)
..+++|||||-.=. .+. .+.............|.+|+.+|..++
T Consensus 43 ~f~laHELgH~~~~------~~~-~~~~~~~~~~~~~~~E~~An~fA~~lL 86 (122)
T PF06114_consen 43 RFTLAHELGHILLH------HGD-ETFNYYLNYFFNERQEREANAFAAALL 86 (122)
T ss_dssp HHHHHHHHHHHHHH------H-H-HHHHHHHHH--THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh------hcc-ccchhhccccchhhHHHHHHHHHHHHh
Confidence 35889999997422 111 111123455567778999999998877
Done!