BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004389
(757 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex
Length = 963
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 150/661 (22%), Positives = 287/661 (43%), Gaps = 83/661 (12%)
Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64
V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L
Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82
Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW--G 122
K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + + W
Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCA 142
Query: 123 GGGIVNWLRDEMNSHPEFVPG------FLELLTVLPEEVFNYKIAARPERRRQFEK-ELT 175
+V + E + V G LELLTVLPEE ++ + P+ R+ + L
Sbjct: 143 VADMVRLFQAEDSP----VDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLA 195
Query: 176 SQMEVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLH 231
+ L L ++++VL+ F+SW++L+ +P + L+ A ++L
Sbjct: 196 VECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQ 251
Query: 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDV 289
L ++SV I I S A + + ++P ++ L+ L + + D E
Sbjct: 252 DSELFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETS 305
Query: 290 KAIARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWH 341
I R+ +G+++ + + +S L +V+ ++ P + +S+T FW+
Sbjct: 306 HGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWY 365
Query: 342 SLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSL 399
+LQ D +SF E A + QV+R Y LV ++ + Q+P D Y S
Sbjct: 366 TLQ------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSS 414
Query: 400 EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC 459
++ ++F+ R D ++D L+ +LG + L LY K +
Sbjct: 415 DEKEQFRIYRVD-----------------ISDTLMYVYEMLGAE-LLSNLYDKLGRLLTS 456
Query: 460 CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGA 518
++ W+ EA L+ ++I+ + V ++V+P ++ TV TIGA
Sbjct: 457 SEEPYS-WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGA 515
Query: 519 YSKWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYN 578
S+W + P ++ SVL ++ + E + IC +C+ L Y +
Sbjct: 516 LSEWL---ADHPVMINSVLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVA 571
Query: 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQG 638
V + + + + L++AL +++ L + K L L P + L+++ +
Sbjct: 572 VSQDVLMKQIH---KTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI 628
Query: 639 P 639
P
Sbjct: 629 P 629
>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex
pdb|2X1G|G Chain G, Crystal Structure Of Importin13 - Mago-Y14 Complex
Length = 971
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 162/743 (21%), Positives = 294/743 (39%), Gaps = 116/743 (15%)
Query: 29 WLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLN 88
WL D + + AWQ + L+ S E F + TL SK+ + E+P E L+ +
Sbjct: 30 WLTDAEASPQAWQFSWQLMQLGKSQ-EVQFFGAITLHSKLMKHWHEVPPENREELKQKIL 88
Query: 89 TLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG--GIVNWLRDEMNSHPEFVPG--- 143
+ +F GP V ++ I++ A VH+ E W G ++N +++ P
Sbjct: 89 ESIVRFAGGPKIVLNRLCISLGAYIVHMLGE-WPGAIEEVINTFQNQ--RMPNVSADVQL 145
Query: 144 --FLELLTVLPEE-----------VFNYKIAARPE-------------RRRQFEKELTSQ 177
LE+LT +PEE V +IA R + R ++ E S
Sbjct: 146 WIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSN 205
Query: 178 MEVALSTL-TACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236
M A+ + T +I E + A L + H+ + + +TA + +E
Sbjct: 206 MNRAVKCVGTWIKNIGYTIEGCVTITAVLLEVVHKCYWPCIHAGDGCMTADENELAESCL 265
Query: 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKA-IARL 295
+ VN+I I A V LI++ + + + D ED+ I L
Sbjct: 266 KTMVNII---IQPDCHNYPKTAFV---LIKMFLDSLSEITKTEWKRENDNEDIIVHIYML 319
Query: 296 FADMGDSYVELIATG-----SDESML---IVHALLEVASHP-----EYDIASMTFNFWHS 342
F + + L+ +G + S+L IV +L P E ++M FW+
Sbjct: 320 FVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYM 379
Query: 343 LQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ--DLSLE 400
LQ D + N+ ++ + + + Y L ++ + + P + S +
Sbjct: 380 LQ------DEVFAMSNDE----QKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD 429
Query: 401 DLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460
DL+ F+ R D ++D + VL D L+IL E +A
Sbjct: 430 DLECFRCYRQD-----------------ISDTFMYCYDVLN-DYILEILAAMLDEAIADL 471
Query: 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVM---AXXXXXXXXXXXXXTVCLTIG 517
W EA ++ ++++ + E +P++M A T T+G
Sbjct: 472 QRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMG 531
Query: 518 AYSKWFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLY 577
+Y W +P+ + +++L G+++S + +C DC+ +L Y D L
Sbjct: 532 SYCNWL---MENPAYIPPAINLLVRGLNSS--MSAQATLGLKELCRDCQLQLKPYADPLL 586
Query: 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQ 637
N ++N G +K S DS+ L+ ++ +++ L + K L+++ P LQ I
Sbjct: 587 NACHASLNT-GRMKNS--DSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQA 643
Query: 638 GPEILQKKHP--RDLTV-HIDRFAYIFRYVN---------HP--EAVADAIQRLWPIFKA 683
K P R T+ ++ + +F +N P + V +QR PIFK
Sbjct: 644 D-----SKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKR 698
Query: 684 IFDIRAWDMRTMESLCRACKYAV 706
I ++ ++ +E+ C A K+A+
Sbjct: 699 IAEMWVEEIDVLEAACSAMKHAI 721
>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex
Length = 963
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 149/658 (22%), Positives = 280/658 (42%), Gaps = 77/658 (11%)
Query: 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLH-DATSNLETLIFCSQTL 64
V++AL+ LY+ P+ + A +WL Q + AW + LL D ++ F + L
Sbjct: 25 NVEKALHQLYYDPNIENKNLAQKWLXQAQVSPQAWHFSWQLLQPDKVPEIQ--YFGASAL 82
Query: 65 RSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGG 124
K+ R ++P++ L+ L T + +F G V T++ +A+A+LA+ + W
Sbjct: 83 HIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSXXPDAW-PC 141
Query: 125 GIVNWLR-DEMNSHPEFVPG----FLELLTVLPEEVFNYKIAARPERRRQFEK-ELTSQM 178
+ + +R + P G LELLTVLPEE ++ + P+ R+ + L +
Sbjct: 142 AVADXVRLFQAEDSPVDGQGRCLALLELLTVLPEE---FQTSRLPQYRKGLVRTSLAVEC 198
Query: 179 EVALSTLTACLHINE----LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEI 234
L L ++++VL+ F+SW++L+ +P + L+ A ++L
Sbjct: 199 GAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQDSE 254
Query: 235 LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDS--SKDEEDVKAI 292
L ++SV I I S A + + ++P ++ L+ L + + D E I
Sbjct: 255 LFDSSVEAIVNAI------SQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDXETSHGI 308
Query: 293 ARLFADMGDSYVELIATGSD--ESML-IVHALLEVASHPEY-----DIASMTFNFWHSLQ 344
R+ +G+++ + + +S L +V+ + P + +S+T FW++LQ
Sbjct: 309 CRIAVALGENHSRALLDQVEHWQSFLALVNXIXFCTGIPGHYPVNETTSSLTLTFWYTLQ 368
Query: 345 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDL 402
D +SF E A + QV+R Y LV ++ + Q+P D Y S ++
Sbjct: 369 ------DDILSFEAEKQAVYQ-----QVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEK 417
Query: 403 KEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGN 462
++F+ R D ++D L LG + L LY K +
Sbjct: 418 EQFRIYRVD-----------------ISDTLXYVYEXLGAE-LLSNLYDKLGRLLTSSEE 459
Query: 463 KHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAXXXXXXXXXXXXX-TVCLTIGAYSK 521
++ W+ EA L+ ++I+ + V ++V+P ++ TV TIGA S+
Sbjct: 460 PYS-WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVXFTIGALSE 518
Query: 522 WFDAASSDPSILASVLSILTSGMSTSEDTXXXXXXXFRHICDDCRKKLCGYLDGLYNVYR 581
W + P + SVL ++ + E + IC +C+ L Y + V +
Sbjct: 519 WL---ADHPVXINSVLPLVLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQ 574
Query: 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGP 639
+ + L +AL +++ L + K L L P + L+++ + P
Sbjct: 575 DVLXKQIH---KTSQCXWLXQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIP 629
>pdb|3TYX|A Chain A, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3TYX|B Chain B, Crystal Structure Of The F177s Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 714
D + Y + H +A+ I++ P+F + I W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSDESIN-WEEKTKEKELRPNNWISVTNGQATG 207
Query: 715 ITIGAILEEIQGLYQQHQQPC 735
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp
Length = 316
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 366 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVM 425
R+R+ V R AYE L V+FR+QYP+ + LS E ++ Y S VM
Sbjct: 100 RARKFNVGR-AYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVM 158
Query: 426 LIAVAD 431
L + +
Sbjct: 159 LFNIEN 164
>pdb|3GJZ|A Chain A, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
pdb|3GJZ|B Chain B, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
Length = 336
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 714
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 715 ITIGAILEEIQGLYQQHQQPC 735
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYXPC 228
>pdb|3T5M|A Chain A, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3T5M|B Chain B, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 714
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 715 ITIGAILEEIQGLYQQHQQPC 735
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3U1B|A Chain A, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3U1B|B Chain B, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG 714
D + Y + H +A+ I++ P+F + + W+ +T E R + T+ + G
Sbjct: 151 DTYKYFLETLLHDQALPYNIKQ--PLFWSD-EFINWEEKTKEKELRPNNWISVTNGQATG 207
Query: 715 ITIGAILEEIQGLYQQHQQPC 735
IG L IQG++ PC
Sbjct: 208 RVIGGNLNTIQGIWGSPYMPC 228
>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w
Length = 316
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 366 RSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLK 403
R+R+ V R AYE L V+FR+QYP+ + LS E ++
Sbjct: 100 RARKFNVGR-AYELLRGYVNFRLQYPELFDSLSPEAVR 136
>pdb|2BIE|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIE|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure H)
pdb|2BIG|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
pdb|2BIG|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure I)
Length = 361
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 354 ISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 413
++F + + E S R Q + +E +L+ +Q P DYQ L L+ + T +
Sbjct: 28 LNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN 87
Query: 414 CCSSSTLTESVMLIAVADVLIDAASVLG 441
+ T+ V+ + ++ + A +LG
Sbjct: 88 LLTKGTIGNYVLTGSWSEKALKEAKLLG 115
>pdb|1W23|A Chain A, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|1W23|B Chain B, Crystal Structure Of Phosphoserine Aminotransferase From
Bacillus Alcalophilus
pdb|2BHX|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BHX|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure A)
pdb|2BI1|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI1|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure B)
pdb|2BI2|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI2|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure C)
pdb|2BI3|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI3|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure D)
pdb|2BI5|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI5|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure E)
pdb|2BI9|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BI9|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure F)
pdb|2BIA|A Chain A, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
pdb|2BIA|B Chain B, Radiation Damage Of The Schiff Base In Phosphoserine
Aminotransferase (Structure G)
Length = 360
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 354 ISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLA 413
++F + + E S R Q + +E +L+ +Q P DYQ L L+ + T +
Sbjct: 27 LNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMN 86
Query: 414 CCSSSTLTESVMLIAVADVLIDAASVLG 441
+ T+ V+ + ++ + A +LG
Sbjct: 87 LLTKGTIGNYVLTGSWSEKALKEAKLLG 114
>pdb|3HUT|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Abc Transporter From Rhodospirillum Rubrum
Length = 358
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 26/124 (20%)
Query: 215 SVLASHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS 274
++L + L LT ++ + + EA+ +L ++AAG GG V++
Sbjct: 4 ALLLGYELPLTGANAAYGRVFQEAAR---LQLDRFNAAGGVGGRPVDI------------ 48
Query: 275 LKAHLTDSSKDEEDVKAIARLFAD-------MGD-SYVELIATGSDESMLIVHALLEVAS 326
DS D + + IAR F D +GD S A GS L A+
Sbjct: 49 ---LYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSXAAGSIYGKEGXPQLSPTAA 105
Query: 327 HPEY 330
HP+Y
Sbjct: 106 HPDY 109
>pdb|4HKU|A Chain A, The Crystal Structure Of Tetr Transcriptional Regulator
(Lmo2814) From Listeria Monocytogenes Egd-E
pdb|4HKU|B Chain B, The Crystal Structure Of Tetr Transcriptional Regulator
(Lmo2814) From Listeria Monocytogenes Egd-E
Length = 178
Score = 30.0 bits (66), Expect = 5.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 5 NTVKEALNALYHHPDDAVRMQADRWLQD-----FQHTIDAWQVADNLLHD 49
N AL Y + +D + A RWL++ F T DA Q D+ LHD
Sbjct: 38 NVTHAALYKHYRNKEDLFQKLALRWLEETSREIFAWTQDAGQTPDDALHD 87
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl-
Trna Synthetase
Length = 88
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 401 DLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKIL 449
D + +K T Y +AC S L ++ ++ V +V+ D L D TL++L
Sbjct: 23 DAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELL 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,040,464
Number of Sequences: 62578
Number of extensions: 745697
Number of successful extensions: 1868
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1845
Number of HSP's gapped (non-prelim): 15
length of query: 757
length of database: 14,973,337
effective HSP length: 106
effective length of query: 651
effective length of database: 8,340,069
effective search space: 5429384919
effective search space used: 5429384919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)