Query 004389
Match_columns 757
No_of_seqs 186 out of 1482
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 22:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004389.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004389hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2022 Nuclear transport rece 100.0 4.1E-69 8.8E-74 574.1 61.0 701 4-753 6-779 (982)
2 KOG2081 Nuclear transport regu 100.0 1.2E-66 2.6E-71 535.9 47.7 550 24-630 2-557 (559)
3 KOG2021 Nuclear mRNA export fa 100.0 6.2E-61 1.3E-65 501.4 50.8 696 4-749 2-768 (980)
4 KOG2171 Karyopherin (importin) 100.0 1E-43 2.2E-48 393.5 51.5 605 3-734 2-621 (1075)
5 COG5101 CRM1 Importin beta-rel 100.0 4.3E-40 9.4E-45 338.5 50.4 715 4-748 13-818 (1053)
6 KOG2023 Nuclear transport rece 100.0 3.2E-39 7E-44 334.8 36.7 619 5-750 13-737 (885)
7 KOG1991 Nuclear transport rece 100.0 7.5E-35 1.6E-39 316.9 58.3 642 5-732 4-695 (1010)
8 KOG1241 Karyopherin (importin) 100.0 4.3E-31 9.3E-36 279.4 48.8 594 17-729 12-648 (859)
9 KOG1992 Nuclear export recepto 100.0 1E-30 2.2E-35 278.4 46.3 621 1-718 1-683 (960)
10 COG5215 KAP95 Karyopherin (imp 100.0 1.3E-24 2.7E-29 222.9 47.7 594 17-731 16-651 (858)
11 KOG2020 Nuclear transport rece 100.0 1.7E-24 3.7E-29 246.5 46.2 602 4-637 9-657 (1041)
12 COG5656 SXM1 Importin, protein 99.9 8.7E-23 1.9E-27 215.6 51.8 644 7-730 5-692 (970)
13 KOG2274 Predicted importin 9 [ 99.8 5.8E-15 1.3E-19 160.6 46.5 503 4-612 3-562 (1005)
14 KOG1993 Nuclear transport rece 99.8 6.6E-15 1.4E-19 157.8 41.3 587 7-670 2-653 (978)
15 KOG1410 Nuclear transport rece 99.8 2.1E-12 4.7E-17 136.0 54.6 338 1-347 1-386 (1082)
16 PF08389 Xpo1: Exportin 1-like 99.7 1.4E-17 3.1E-22 154.7 10.8 141 98-243 1-148 (148)
17 COG5657 CSE1 CAS/CSE protein i 99.6 2.9E-11 6.2E-16 132.8 43.5 173 1-189 1-179 (947)
18 KOG2171 Karyopherin (importin) 99.3 3.7E-07 8.1E-12 104.0 50.5 256 464-732 400-696 (1075)
19 PF08506 Cse1: Cse1; InterPro 99.2 8.3E-10 1.8E-14 116.2 21.7 207 317-558 142-370 (370)
20 PF03810 IBN_N: Importin-beta 99.1 2.2E-10 4.7E-15 92.8 7.5 67 26-92 1-76 (77)
21 KOG1241 Karyopherin (importin) 98.9 0.00019 4.1E-09 78.7 43.5 437 176-717 360-821 (859)
22 KOG1824 TATA-binding protein-i 98.9 0.00012 2.5E-09 81.9 42.3 571 51-730 16-622 (1233)
23 KOG1824 TATA-binding protein-i 98.6 0.0022 4.9E-08 72.1 42.8 239 465-727 491-746 (1233)
24 KOG2023 Nuclear transport rece 98.6 2.9E-05 6.4E-10 83.4 27.3 226 507-749 370-652 (885)
25 COG5215 KAP95 Karyopherin (imp 98.3 0.0075 1.6E-07 64.4 44.3 172 549-738 571-742 (858)
26 KOG1242 Protein containing ada 98.3 3.8E-05 8.3E-10 82.8 18.2 263 429-729 239-545 (569)
27 KOG0915 Uncharacterized conser 97.9 0.0095 2.1E-07 70.7 27.8 259 448-725 1036-1325(1702)
28 PF01602 Adaptin_N: Adaptin N 97.5 0.27 5.7E-06 55.9 38.2 454 16-605 52-520 (526)
29 PF03378 CAS_CSE1: CAS/CSE pro 97.3 0.0021 4.6E-08 69.6 12.4 131 566-710 17-149 (435)
30 KOG1242 Protein containing ada 97.1 0.015 3.3E-07 63.3 15.9 260 429-723 195-461 (569)
31 KOG0213 Splicing factor 3b, su 96.9 1.1 2.4E-05 50.1 40.9 290 372-733 792-1093(1172)
32 PTZ00429 beta-adaptin; Provisi 96.7 2 4.2E-05 50.2 42.2 127 16-154 78-209 (746)
33 KOG1059 Vesicle coat complex A 96.7 1.6 3.4E-05 48.9 33.2 225 77-345 139-365 (877)
34 PF12755 Vac14_Fab1_bd: Vacuol 96.7 0.0068 1.5E-07 50.7 7.0 76 509-586 3-79 (97)
35 PF12460 MMS19_C: RNAPII trans 96.5 1.9 4E-05 47.2 32.3 208 465-726 202-413 (415)
36 PF12348 CLASP_N: CLASP N term 96.3 0.14 3E-06 50.9 15.7 158 536-717 54-216 (228)
37 KOG2956 CLIP-associating prote 96.2 0.39 8.4E-06 50.8 18.0 179 511-722 312-493 (516)
38 PLN03200 cellulose synthase-in 96.1 6.7 0.00015 50.5 46.1 214 467-708 460-681 (2102)
39 KOG0212 Uncharacterized conser 96.0 0.066 1.4E-06 57.5 11.7 55 532-586 81-136 (675)
40 KOG1991 Nuclear transport rece 96.0 4.2 9.2E-05 47.3 52.8 370 220-638 126-559 (1010)
41 KOG0213 Splicing factor 3b, su 95.9 3.9 8.5E-05 46.0 36.1 171 429-612 736-915 (1172)
42 PF12348 CLASP_N: CLASP N term 95.9 0.14 3E-06 51.0 13.0 137 464-612 18-163 (228)
43 PF14500 MMS19_N: Dos2-interac 95.9 0.41 8.9E-06 48.4 16.2 224 504-749 11-241 (262)
44 PF12755 Vac14_Fab1_bd: Vacuol 95.6 0.033 7.1E-07 46.6 6.1 89 470-561 3-94 (97)
45 PF10508 Proteasom_PSMB: Prote 95.5 1.1 2.5E-05 50.1 19.8 253 466-743 51-317 (503)
46 PF03378 CAS_CSE1: CAS/CSE pro 95.5 0.77 1.7E-05 50.1 17.6 204 532-751 23-278 (435)
47 KOG0166 Karyopherin (importin) 95.4 1.2 2.6E-05 48.7 18.3 136 468-610 167-309 (514)
48 PF13513 HEAT_EZ: HEAT-like re 95.3 0.017 3.7E-07 42.7 3.0 54 506-561 1-55 (55)
49 KOG0212 Uncharacterized conser 94.9 7.2 0.00016 42.6 24.2 196 492-708 210-407 (675)
50 smart00802 UME Domain in UVSB 94.8 0.38 8.2E-06 41.0 10.0 92 532-630 8-104 (107)
51 COG5064 SRP1 Karyopherin (impo 94.6 1.4 3E-05 44.7 14.8 136 468-611 172-316 (526)
52 PF08767 CRM1_C: CRM1 C termin 94.2 4.4 9.5E-05 42.4 18.8 170 194-386 43-221 (319)
53 cd00020 ARM Armadillo/beta-cat 94.2 0.098 2.1E-06 45.7 5.6 95 465-563 19-120 (120)
54 COG5181 HSH155 U2 snRNP splice 94.1 7.2 0.00016 43.0 19.9 266 372-709 597-872 (975)
55 PF01602 Adaptin_N: Adaptin N 94.1 4.9 0.00011 45.6 20.7 151 432-607 64-219 (526)
56 PF08064 UME: UME (NUC010) dom 94.0 0.61 1.3E-05 39.9 9.9 92 533-631 9-105 (107)
57 PF10274 ParcG: Parkin co-regu 93.2 0.72 1.6E-05 43.2 9.5 101 653-756 58-174 (183)
58 PF02985 HEAT: HEAT repeat; I 93.0 0.12 2.6E-06 32.9 3.0 30 536-565 1-31 (31)
59 PF13513 HEAT_EZ: HEAT-like re 92.6 0.051 1.1E-06 40.2 0.9 53 467-519 1-55 (55)
60 PLN03200 cellulose synthase-in 92.1 49 0.0011 43.2 47.7 214 465-708 542-765 (2102)
61 KOG1062 Vesicle coat complex A 91.7 30 0.00064 39.8 42.4 94 471-565 441-546 (866)
62 KOG1059 Vesicle coat complex A 91.5 15 0.00033 41.5 18.1 95 476-578 129-225 (877)
63 PRK09687 putative lyase; Provi 91.3 19 0.00041 36.9 18.7 137 439-607 49-186 (280)
64 KOG0166 Karyopherin (importin) 91.2 3.7 7.9E-05 45.0 13.3 157 549-729 125-289 (514)
65 PF12717 Cnd1: non-SMC mitotic 91.0 4.8 0.0001 38.1 12.8 143 473-627 8-155 (178)
66 KOG0168 Putative ubiquitin fus 90.9 19 0.00041 41.5 18.5 155 549-730 227-391 (1051)
67 PF08064 UME: UME (NUC010) dom 90.8 4.5 9.9E-05 34.6 11.2 101 619-728 4-105 (107)
68 KOG1992 Nuclear export recepto 90.7 38 0.00081 39.2 22.1 122 615-736 169-306 (960)
69 PF11865 DUF3385: Domain of un 90.5 7.8 0.00017 35.9 13.3 121 573-708 8-158 (160)
70 KOG1943 Beta-tubulin folding c 90.4 20 0.00043 42.6 18.7 222 468-709 443-707 (1133)
71 COG5181 HSH155 U2 snRNP splice 90.4 31 0.00066 38.4 18.9 164 432-614 304-477 (975)
72 COG5064 SRP1 Karyopherin (impo 90.2 8.6 0.00019 39.3 13.7 143 465-621 128-283 (526)
73 PF08167 RIX1: rRNA processing 90.2 5 0.00011 37.4 11.8 133 445-584 22-164 (165)
74 PF10274 ParcG: Parkin co-regu 89.6 2.7 5.8E-05 39.5 9.3 87 533-624 36-126 (183)
75 PF12460 MMS19_C: RNAPII trans 88.7 27 0.00058 38.2 18.1 190 429-625 210-409 (415)
76 KOG0915 Uncharacterized conser 88.0 80 0.0017 39.3 46.2 190 372-581 1165-1362(1702)
77 PF12719 Cnd3: Nuclear condens 87.9 36 0.00079 35.2 18.3 128 473-610 3-144 (298)
78 smart00802 UME Domain in UVSB 87.9 12 0.00026 31.9 11.3 98 622-728 7-105 (107)
79 PF04826 Arm_2: Armadillo-like 87.8 31 0.00067 34.7 16.2 134 465-610 25-164 (254)
80 KOG1967 DNA repair/transcripti 87.4 6.8 0.00015 45.4 12.2 171 538-728 818-1004(1030)
81 KOG1943 Beta-tubulin folding c 87.0 54 0.0012 39.2 19.1 238 492-746 339-613 (1133)
82 KOG1240 Protein kinase contain 86.7 68 0.0015 38.9 19.7 297 19-383 436-750 (1431)
83 KOG4653 Uncharacterized conser 86.5 28 0.00062 40.3 16.2 189 505-719 740-930 (982)
84 PF14500 MMS19_N: Dos2-interac 85.9 42 0.00091 34.0 22.4 236 464-726 10-257 (262)
85 KOG1058 Vesicle coat complex C 84.6 83 0.0018 36.2 22.0 148 317-523 318-465 (948)
86 PF05918 API5: Apoptosis inhib 84.3 78 0.0017 35.6 19.0 175 505-709 72-256 (556)
87 PF10508 Proteasom_PSMB: Prote 83.5 83 0.0018 35.4 28.0 249 429-708 58-320 (503)
88 cd00020 ARM Armadillo/beta-cat 82.9 2.9 6.3E-05 36.1 5.7 72 491-566 8-81 (120)
89 PF08623 TIP120: TATA-binding 82.9 6.7 0.00015 36.4 8.1 77 506-586 41-117 (169)
90 PF12717 Cnd1: non-SMC mitotic 82.4 15 0.00031 34.8 10.6 54 505-564 1-55 (178)
91 KOG2256 Predicted protein invo 82.1 96 0.0021 35.1 18.9 215 505-727 255-476 (661)
92 PRK09687 putative lyase; Provi 80.9 70 0.0015 32.8 18.0 209 7-247 25-249 (280)
93 PF13646 HEAT_2: HEAT repeats; 80.8 14 0.00031 29.8 8.8 87 8-110 2-88 (88)
94 PF10363 DUF2435: Protein of u 79.9 17 0.00037 30.0 8.7 75 542-622 10-85 (92)
95 KOG2753 Uncharacterized conser 79.6 36 0.00079 34.9 12.3 73 532-611 104-178 (378)
96 KOG1240 Protein kinase contain 78.6 33 0.00072 41.3 13.3 55 505-563 436-491 (1431)
97 PF13646 HEAT_2: HEAT repeats; 77.1 7.5 0.00016 31.5 6.1 56 7-64 32-87 (88)
98 KOG2213 Apoptosis inhibitor 5/ 76.1 1E+02 0.0022 32.5 14.6 180 507-709 39-228 (460)
99 PF02985 HEAT: HEAT repeat; I 75.7 6.8 0.00015 24.7 4.1 30 677-708 1-30 (31)
100 PF01603 B56: Protein phosphat 75.5 1.3E+02 0.0027 32.9 16.5 94 652-748 274-369 (409)
101 KOG1993 Nuclear transport rece 74.8 1.7E+02 0.0037 34.0 17.0 157 549-724 502-661 (978)
102 PF08161 NUC173: NUC173 domain 73.9 87 0.0019 30.2 14.8 54 560-618 26-79 (198)
103 PF08506 Cse1: Cse1; InterPro 72.2 43 0.00093 35.8 11.6 81 650-730 53-148 (370)
104 KOG1967 DNA repair/transcripti 70.8 69 0.0015 37.6 13.1 85 471-556 924-1017(1030)
105 KOG4653 Uncharacterized conser 69.7 2.3E+02 0.0051 33.3 17.5 153 473-636 785-944 (982)
106 KOG2022 Nuclear transport rece 69.4 2.4E+02 0.0052 33.3 17.5 147 503-674 478-630 (982)
107 COG5240 SEC21 Vesicle coat com 69.3 46 0.00099 36.8 10.8 117 429-562 433-554 (898)
108 KOG1060 Vesicle coat complex A 69.2 85 0.0019 36.3 13.1 167 52-269 299-472 (968)
109 KOG4524 Uncharacterized conser 68.3 2.6E+02 0.0057 33.4 18.6 76 651-728 821-902 (1014)
110 PF11865 DUF3385: Domain of un 67.8 68 0.0015 29.7 10.6 72 534-610 85-158 (160)
111 KOG2753 Uncharacterized conser 67.4 1.5E+02 0.0032 30.7 13.2 46 685-732 154-199 (378)
112 KOG0889 Histone acetyltransfer 66.5 4.9E+02 0.011 36.2 20.5 252 445-707 1030-1306(3550)
113 PF08167 RIX1: rRNA processing 65.6 1.2E+02 0.0025 28.3 13.4 136 571-725 21-161 (165)
114 KOG2956 CLIP-associating prote 65.3 2.1E+02 0.0046 31.2 14.7 84 550-638 422-506 (516)
115 PF11864 DUF3384: Domain of un 65.3 2.3E+02 0.0049 31.5 17.6 53 36-94 26-78 (464)
116 PF05804 KAP: Kinesin-associat 62.2 2E+02 0.0044 33.6 15.1 205 471-707 388-607 (708)
117 KOG0889 Histone acetyltransfer 62.2 1.8E+02 0.0039 39.9 15.7 169 565-750 623-797 (3550)
118 PF10521 DUF2454: Protein of u 62.1 94 0.002 31.9 11.5 54 532-585 116-176 (282)
119 PF12726 SEN1_N: SEN1 N termin 60.6 2.9E+02 0.0064 32.8 16.7 188 532-733 121-329 (727)
120 PF13251 DUF4042: Domain of un 59.8 1.6E+02 0.0035 27.9 13.3 105 545-663 50-175 (182)
121 KOG2160 Armadillo/beta-catenin 59.0 96 0.0021 32.4 10.6 137 464-614 94-245 (342)
122 KOG4224 Armadillo repeat prote 58.4 2.1E+02 0.0045 30.1 12.5 142 6-155 251-448 (550)
123 KOG1078 Vesicle coat complex C 58.4 1E+02 0.0022 35.6 11.3 116 429-563 412-532 (865)
124 KOG2021 Nuclear mRNA export fa 58.2 3.5E+02 0.0077 31.4 30.4 118 467-586 660-791 (980)
125 PRK13800 putative oxidoreducta 57.1 4.4E+02 0.0096 32.2 18.5 88 8-112 624-711 (897)
126 PF12783 Sec7_N: Guanine nucle 56.4 1.7E+02 0.0037 27.2 11.9 81 674-756 71-154 (168)
127 KOG1020 Sister chromatid cohes 56.4 5.2E+02 0.011 32.8 21.1 258 473-749 836-1151(1692)
128 KOG2025 Chromosome condensatio 56.1 3.7E+02 0.0081 31.0 19.3 176 26-209 66-262 (892)
129 KOG0168 Putative ubiquitin fus 55.5 4.1E+02 0.009 31.4 23.2 171 429-612 232-416 (1051)
130 PF05804 KAP: Kinesin-associat 53.0 4.4E+02 0.0096 31.0 21.4 84 490-580 331-420 (708)
131 cd05134 RasGAP_RASA3 RASA3 (or 50.9 3.1E+02 0.0067 28.5 13.0 31 532-563 2-32 (310)
132 PF05004 IFRD: Interferon-rela 50.6 3.1E+02 0.0068 28.5 15.0 108 594-712 57-165 (309)
133 cd03568 VHS_STAM VHS domain fa 49.6 2E+02 0.0044 26.0 10.3 75 534-612 36-113 (144)
134 KOG4541 Nuclear transport rece 49.5 4.1E+02 0.009 29.6 14.8 105 534-639 298-405 (748)
135 cd05394 RasGAP_RASA2 RASA2 (or 48.0 2.6E+02 0.0057 29.0 11.7 32 532-564 2-33 (313)
136 cd08050 TAF6 TATA Binding Prot 47.9 3.2E+02 0.007 28.9 12.9 149 446-607 176-338 (343)
137 PF08767 CRM1_C: CRM1 C termin 47.3 3.6E+02 0.0077 28.2 24.9 100 465-567 85-198 (319)
138 PF00514 Arm: Armadillo/beta-c 47.1 32 0.00069 23.2 3.6 27 536-562 13-40 (41)
139 PF01603 B56: Protein phosphat 46.3 4.2E+02 0.0092 28.8 14.0 212 7-248 135-370 (409)
140 PF04510 DUF577: Family of unk 44.8 2.7E+02 0.0058 26.0 16.3 107 82-208 3-118 (174)
141 PTZ00429 beta-adaptin; Provisi 43.2 6.4E+02 0.014 30.0 44.8 87 470-567 350-437 (746)
142 KOG1820 Microtubule-associated 42.6 4E+02 0.0087 31.8 13.5 141 549-714 310-450 (815)
143 PF11229 DUF3028: Protein of u 42.0 5.3E+02 0.011 28.7 17.7 107 591-712 245-351 (589)
144 KOG1060 Vesicle coat complex A 41.7 4.2E+02 0.009 31.1 12.7 64 505-576 300-363 (968)
145 PF10521 DUF2454: Protein of u 41.2 4.1E+02 0.0089 27.2 16.1 170 553-729 95-275 (282)
146 KOG2274 Predicted importin 9 [ 39.9 7.3E+02 0.016 29.7 22.8 221 489-733 525-764 (1005)
147 PF09184 PPP4R2: PPP4R2; Inte 39.5 2.7E+02 0.0058 28.7 10.3 102 4-111 2-109 (288)
148 PF14668 RICTOR_V: Rapamycin-i 39.2 39 0.00085 26.5 3.3 52 469-521 3-58 (73)
149 cd00864 PI3Ka Phosphoinositide 39.2 2.2E+02 0.0048 26.0 8.8 74 7-91 41-114 (152)
150 KOG0414 Chromosome condensatio 36.1 4E+02 0.0087 32.7 12.0 184 532-750 916-1104(1251)
151 PF00790 VHS: VHS domain; Int 36.0 2.4E+02 0.0051 25.3 8.5 77 532-611 39-120 (140)
152 COG5116 RPN2 26S proteasome re 35.9 1.1E+02 0.0023 34.0 6.9 88 490-586 585-673 (926)
153 PF07571 DUF1546: Protein of u 35.7 1.8E+02 0.0039 24.0 6.9 68 504-574 18-90 (92)
154 KOG1410 Nuclear transport rece 35.4 7.5E+02 0.016 28.5 13.5 126 575-709 255-386 (1082)
155 KOG2160 Armadillo/beta-catenin 34.8 4.7E+02 0.01 27.5 11.1 93 17-117 94-199 (342)
156 PF11698 V-ATPase_H_C: V-ATPas 34.4 1.4E+02 0.0031 25.9 6.3 66 6-73 44-119 (119)
157 cd03569 VHS_Hrs_Vps27p VHS dom 33.8 3.6E+02 0.0078 24.3 10.3 75 534-612 40-117 (142)
158 TIGR03504 FimV_Cterm FimV C-te 31.9 82 0.0018 21.9 3.6 32 1-32 12-43 (44)
159 KOG2137 Protein kinase [Signal 31.9 8.7E+02 0.019 28.2 13.6 18 690-707 479-496 (700)
160 KOG4224 Armadillo repeat prote 30.8 1.6E+02 0.0035 30.9 6.9 72 492-565 210-282 (550)
161 PF09384 UTP15_C: UTP15 C term 30.7 2.5E+02 0.0054 25.5 7.7 53 531-584 74-128 (148)
162 PF10441 Urb2: Urb2/Npa2 famil 30.2 5.3E+02 0.012 25.2 18.7 48 566-616 146-193 (223)
163 PF05536 Neurochondrin: Neuroc 30.1 8.7E+02 0.019 27.6 22.3 135 469-614 115-266 (543)
164 PF10363 DUF2435: Protein of u 30.0 3.2E+02 0.0069 22.6 7.8 83 40-135 5-87 (92)
165 smart00288 VHS Domain present 29.8 4E+02 0.0086 23.7 9.8 75 533-610 35-112 (133)
166 KOG2062 26S proteasome regulat 29.8 3.2E+02 0.007 31.7 9.5 87 491-586 589-676 (929)
167 cd05128 RasGAP_GAP1_like The G 29.5 6.3E+02 0.014 26.4 11.3 37 532-569 2-38 (315)
168 PF05233 PHB_acc: PHB accumula 29.1 1.2E+02 0.0025 20.8 3.9 31 700-730 4-34 (41)
169 PF09324 DUF1981: Domain of un 28.7 3.2E+02 0.0069 22.2 9.4 71 672-744 13-83 (86)
170 PF12333 Ipi1_N: Rix1 complex 27.6 3.7E+02 0.0079 22.6 7.7 56 668-725 3-59 (102)
171 KOG2032 Uncharacterized conser 27.0 8.7E+02 0.019 26.9 11.7 163 433-608 203-370 (533)
172 cd00872 PI3Ka_I Phosphoinositi 26.5 4E+02 0.0088 24.9 8.4 12 126-137 124-135 (171)
173 PF05536 Neurochondrin: Neuroc 26.2 1E+03 0.022 27.1 18.4 67 161-230 338-409 (543)
174 PF04826 Arm_2: Armadillo-like 25.8 6.9E+02 0.015 25.1 11.3 57 10-67 58-122 (254)
175 KOG2199 Signal transducing ada 25.7 4.2E+02 0.0091 28.2 8.8 99 431-540 27-136 (462)
176 KOG2933 Uncharacterized conser 25.6 6.4E+02 0.014 26.1 9.9 74 505-580 101-175 (334)
177 COG5096 Vesicle coat complex, 25.5 4.7E+02 0.01 30.9 10.2 118 425-561 36-154 (757)
178 KOG0392 SNF2 family DNA-depend 25.3 1.2E+03 0.025 29.4 13.3 99 504-612 828-928 (1549)
179 cd03561 VHS VHS domain family; 25.1 4.8E+02 0.01 23.1 10.2 78 534-613 36-116 (133)
180 PF01465 GRIP: GRIP domain; I 24.7 1.5E+02 0.0032 20.9 3.9 34 78-114 3-36 (46)
181 cd00870 PI3Ka_III Phosphoinosi 24.7 3.2E+02 0.0069 25.5 7.3 46 18-65 58-103 (166)
182 PF14675 FANCI_S1: FANCI solen 24.1 7E+02 0.015 24.5 12.1 144 469-624 5-157 (223)
183 KOG0414 Chromosome condensatio 23.9 5.5E+02 0.012 31.6 10.4 89 429-519 897-988 (1251)
184 PF08158 NUC130_3NT: NUC130/3N 23.7 2.5E+02 0.0055 20.4 5.0 36 78-113 11-47 (52)
185 KOG1077 Vesicle coat complex A 23.7 1.2E+03 0.026 27.2 31.4 130 464-605 438-583 (938)
186 PF08389 Xpo1: Exportin 1-like 23.4 4.9E+02 0.011 22.9 8.5 103 506-616 2-122 (148)
187 PF08161 NUC173: NUC173 domain 23.3 2.6E+02 0.0056 26.9 6.7 63 692-754 14-79 (198)
188 PF13251 DUF4042: Domain of un 23.2 6.5E+02 0.014 23.9 12.6 153 549-707 1-174 (182)
189 KOG2025 Chromosome condensatio 22.5 4E+02 0.0087 30.8 8.5 105 490-605 81-189 (892)
190 KOG2549 Transcription initiati 22.4 1.1E+03 0.025 26.4 13.7 172 430-604 225-413 (576)
191 smart00288 VHS Domain present 22.2 5.6E+02 0.012 22.7 8.7 68 472-540 56-129 (133)
192 KOG3961 Uncharacterized conser 21.8 3.3E+02 0.0071 26.4 6.7 85 536-625 115-202 (262)
193 PRK04964 hypothetical protein; 21.8 2.2E+02 0.0047 21.4 4.3 49 512-562 4-59 (66)
194 smart00185 ARM Armadillo/beta- 21.4 1E+02 0.0022 20.2 2.6 14 549-562 27-40 (41)
195 smart00145 PI3Ka Phosphoinosit 21.2 4E+02 0.0086 25.3 7.4 24 42-65 78-101 (184)
196 PF12333 Ipi1_N: Rix1 complex 21.2 2.1E+02 0.0046 24.1 5.0 55 532-586 8-64 (102)
197 cd07064 AlkD_like_1 A new stru 21.1 4.3E+02 0.0092 25.6 7.8 54 14-69 20-75 (208)
198 cd03569 VHS_Hrs_Vps27p VHS dom 21.0 3E+02 0.0065 24.8 6.3 73 473-547 61-140 (142)
199 PF12783 Sec7_N: Guanine nucle 20.9 4.7E+02 0.01 24.1 7.9 58 550-610 89-147 (168)
200 KOG2137 Protein kinase [Signal 20.8 1.4E+03 0.03 26.7 14.5 158 437-611 378-541 (700)
201 PF01347 Vitellogenin_N: Lipop 20.5 1.3E+03 0.029 26.5 13.8 205 429-705 380-587 (618)
202 KOG1078 Vesicle coat complex C 20.0 1.5E+03 0.032 26.8 16.8 86 515-612 228-314 (865)
No 1
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.1e-69 Score=574.13 Aligned_cols=701 Identities=20% Similarity=0.326 Sum_probs=569.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~l 83 (757)
++.|++++..+|++++++..+.+++||++.|.+|.+|.+.++||+. ++..++|||||.||+.||+++|++++++++..|
T Consensus 6 Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~-~k~~evqyFGAltL~~ki~~~~e~~~~~~~~qL 84 (982)
T KOG2022|consen 6 IATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQP-DKSSEVQYFGALTLHDKINTRWEECPANEAVQL 84 (982)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCC-CchhHHHHHhHHHHHHHHHhhhccCChhHHHHH
Confidence 8999999999999999999999999999999999999999999985 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC--CC-----CchhHHHHHhhhchhhcc
Q 004389 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS--HP-----EFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~--~~-----~~~~~~L~~L~~L~ee~~ 156 (757)
|..++..+..++.+|+.|.+|+|.++|.+.+++.++.||+ .+.+++..++. +| -++..+|+.|+.+|+|..
T Consensus 85 ~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~--ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls~~p~e~q 162 (982)
T KOG2022|consen 85 KLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPT--AIQDVIPTLQGQASPLVLADINCEILLEVLSFMPAEFQ 162 (982)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCc--hHHHHHHHHhcccCccccchhhHHHHHHHhccCcHhhh
Confidence 9999999999998999999999999999999998899999 78888877765 33 256789999999999988
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHhhccCCCCCcccccchhHHHH
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA 226 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~ 226 (757)
...+ +-.||..++.+|......+..++..++... ..+..+++|+..|+.+. ..+. ..-..+++.+
T Consensus 163 ~~~l--~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i-~~~~--~~c~~i~~~l 237 (982)
T KOG2022|consen 163 HVTL--PLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI-SLTG--MDCDQITQVL 237 (982)
T ss_pred hccc--hhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh-cccc--ccHHHHHHHH
Confidence 6554 456788999999999999988888777653 24567999999999953 2332 2234556666
Q ss_pred HhccCC--cchHHHHHHHH---HHHh---------hhhccCCCCCCCCc---hhHHHHHHHHHHh----hHHHhcccCCC
Q 004389 227 LSSLHS--EILSEASVNVI---SELI---------HYSAAGSSGGATVN---MPLIQVIVPQIMS----LKAHLTDSSKD 285 (757)
Q Consensus 227 ~~~L~~--~~~~~~a~~~l---~~ii---------~~~~~~~~~~~~~~---~~~~~~l~~~v~~----l~~~~~~~~~d 285 (757)
++.++. ....+++-+|+ ...+ .....+ +...+ ...+-.++.+.++ ..+...+++..
T Consensus 238 l~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~---d~~~y~nti~~li~i~~~~l~e~~~~~~~~e~~d~~ 314 (982)
T KOG2022|consen 238 LDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQP---DCEFYRNTITLLISICLGILQEVSGKIQEEENADAS 314 (982)
T ss_pred HHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcCh---HHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence 665541 11122221111 1111 100000 00011 1112222222221 11112233333
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHcCC------chhHHHHHHHhcccccCc-----cchhhhhHHHHHHHHHHHhcccCcc
Q 004389 286 EEDVKAIARLFADMGDSYVELIATGS------DESMLIVHALLEVASHPE-----YDIASMTFNFWHSLQVILTKRDSYI 354 (757)
Q Consensus 286 ~~~~~~~~~l~~~~~~~~~~~i~~~~------~~~~~~l~~ll~~~~~~~-----~~v~~~~l~fW~~l~~~~~~~~~~~ 354 (757)
+|....++++++..++++.+.+.++. +.+.++++.++.+++.|+ +.+|..++.||+++.+++....
T Consensus 315 ~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~ypveE~~S~~~l~FW~tL~dei~~~~--- 391 (982)
T KOG2022|consen 315 EEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQYPVEEIVSDRTLIFWYTLQDEIMQTI--- 391 (982)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCCccHHHHHhHHHHHHHHHHHHHHHHhh---
Confidence 67778999999999999888775422 346789999999999884 5689999999999999876421
Q ss_pred ccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhH
Q 004389 355 SFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADV 432 (757)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~ 432 (757)
++. .+.+.+..-+|+|.+++++++.|+.+|++ +.+|+.|+.+.|+.||++ ++|+
T Consensus 392 ---~e~----~~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~~W~S~s~e~F~~YR~d-----------------iSD~ 447 (982)
T KOG2022|consen 392 ---NET----QQIKKQILSQQIYAQLVEILLKKLALPSKEIWLSWSSDSREQFESYRKD-----------------ISDL 447 (982)
T ss_pred ---hcc----CCcchhHHHHHHHHHHHHHHHHHhcCCCHHHhccCCcchHHHHHHHHHH-----------------HHHH
Confidence 111 11223333349999999999999999975 668999999999999999 9999
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCC---ChHHHH
Q 004389 433 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP---QQPQLL 509 (757)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~---~~~~l~ 509 (757)
+.++|.++| +..+..+++.+.+.+..+...+.+|.+.|+++|++.++++.+..+++..++.+++...+.+ .+|.+.
T Consensus 448 ~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asik~S~~n~ql~ 526 (982)
T KOG2022|consen 448 LMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETESTWIPRLFETSASIKLSAPNPQLL 526 (982)
T ss_pred HHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhccccccccCChhHH
Confidence 999999999 8899999999998876544346789999999999999999999999999999999876554 289999
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCC
Q 004389 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS 589 (757)
Q Consensus 510 ~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~ 589 (757)
.|+..+||.++.|+..||. ++++.++.+++++++++ ....|...+.++|++|+.+|.||+++++..+..++..+
T Consensus 527 ~Tss~~igs~s~~l~e~P~---~ln~sl~~L~~~Lh~sk-~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~-- 600 (982)
T KOG2022|consen 527 STSSDLIGSLSNWLGEHPM---YLNPSLPLLFQGLHNSK-ESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKS-- 600 (982)
T ss_pred HHHHHHHHHHHHHHhcCCc---ccCchHHHHHHHhcCch-HHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhccc--
Confidence 9999999999999999997 99999999999999888 78888888999999999999999999999999998753
Q ss_pred CCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCC--
Q 004389 590 LKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHP-- 667 (757)
Q Consensus 590 ~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-- 667 (757)
...+.++.++|.+||.|++...+|++.+|+.++++|++..++.++....+.+. ........+++++.+|.++..+
T Consensus 601 -~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e--~~l~~~~~l~~iS~LftSL~~~~~ 677 (982)
T KOG2022|consen 601 -NAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQE--NHLRIAFQLNTISALFTSLINKKD 677 (982)
T ss_pred -ccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHH--HHHHHHHHHHHHHHHHhccCCCCc
Confidence 57789999999999999999999999999999999999999999876554321 1223445678999999997521
Q ss_pred ----------------cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHHHHHHHHhh
Q 004389 668 ----------------EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFM-GITIGAILEEIQGLYQQ 730 (757)
Q Consensus 668 ----------------~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~-~p~l~~~~~~l~~~~~~ 730 (757)
-|++.+.++++|++..+++.|-++.+++|.+|...++.++.+++.| .|++|.+++++.. |.+
T Consensus 678 ~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~ 756 (982)
T KOG2022|consen 678 IIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLT 756 (982)
T ss_pred cccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hcc
Confidence 2678899999999999999999999999999999999999999888 8999999999999 999
Q ss_pred cCCcchHhhHHHHHHHhCCcccc
Q 004389 731 HQQPCFLYLSSEVIKVVFPPEVL 753 (757)
Q Consensus 731 ~~~~~~l~~~~~~i~~f~~~~~~ 753 (757)
.+...-+.+...++..|..+|.+
T Consensus 757 ~~~a~tl~l~~~~l~~~~~~~~~ 779 (982)
T KOG2022|consen 757 SCLAVTLSLIAACLLAKSTVEQC 779 (982)
T ss_pred chHHHHHHHHHHHHHhhhccccc
Confidence 89988999999999988877764
No 2
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-66 Score=535.95 Aligned_cols=550 Identities=37% Similarity=0.594 Sum_probs=483.8
Q ss_pred HHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHH
Q 004389 24 MQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRT 103 (757)
Q Consensus 24 ~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~ 103 (757)
..|.+||.+||+|+++|.+|.++|+. ..+.+...|||||+++|++++|+++|+.+...+|+.+++++......+..+++
T Consensus 2 ~~A~~~L~~FQ~S~~aW~i~~eiL~~-~~~~~~~~FaaqTlr~Ki~~~F~~Lp~~~~~slrdsl~thl~~l~~~~~~i~t 80 (559)
T KOG2081|consen 2 EKANNWLGNFQKSNDAWQICEEILSQ-KCDVEALLFAAQTLRNKIQYDFSELPPLTHASLRDSLITHLKELHDHPDVIRT 80 (559)
T ss_pred chHhHHHHHhCCChHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHhhHHhcCcchhHHHHHHHHHHHHHHHhCCchHHH
Confidence 47999999999999999999999987 47889999999999999999999999999999999999999988767779999
Q ss_pred HHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcccccccCChHHHHHHHHHHHHhHHHHHH
Q 004389 104 QISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALS 183 (757)
Q Consensus 104 kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~ 183 (757)
||+.++|+++++++ +|.+ .+.++++.+++.+..+.++|++|+++|||+.+.+......||.++++.+.++.+.++.
T Consensus 81 QL~vavA~Lal~~~--~W~n--~I~e~v~~~~~~~~~~~~lLeiL~VlPEE~~~~~~~~~a~Rr~e~~~~l~~~~~~~L~ 156 (559)
T KOG2081|consen 81 QLAVAVAALALHMP--EWVN--PIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVLV 156 (559)
T ss_pred HHHHHHHHHHHHhH--hhcc--hHHHHHHHhhcCCccHHHHHHHHHhCcHhhcchhhhhhhhhHHHHHHHHHHhHHHHHH
Confidence 99999999999997 6998 8999998887766558899999999999999988878899999999999999999999
Q ss_pred HHHHhhhhh-----HHHHHHHHHHHHHhhccCCCCCcccccc-hhHHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCC
Q 004389 184 TLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASH-PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGG 257 (757)
Q Consensus 184 ~l~~~l~~~-----~~~~~~l~~l~~wi~~~~~~~~~~l~~~-~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~ 257 (757)
++..+++.+ +....+++|+.||..++ .+|.+.+.+. +++.++|..+++.++.++|.+|++++++.....+.+.
T Consensus 157 ~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~-~~~~d~v~a~~pLi~l~F~sl~~~~lhe~At~cic~ll~~~~~~~~~~ 235 (559)
T KOG2081|consen 157 FLSDLLERSDLKSSDDLEQVLRCLGSWLRLH-VFPPDQVLASFPLITLAFRSLSDDELHEEATECICALLYCSLDRSEGL 235 (559)
T ss_pred HHHHHHhhcCCChhhHHHHHHHHHhhhhhhc-cCCHHHHHhhhHHHHHHHHHcccchhhHHHHHHHHHHHHHhhhhhccC
Confidence 999999875 46699999999999986 4787776555 9999999999999999999999999998765432111
Q ss_pred CCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhcccccCccchhhhhH
Q 004389 258 ATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTF 337 (757)
Q Consensus 258 ~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l 337 (757)
.......+.+.++...-..+.+.+|.|...++||+|+++|+.+...+..+|+.+..+++.+|.+++|++.+|.+.+|
T Consensus 236 ---~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~l~~vellLl~~~h~~~evie~SF 312 (559)
T KOG2081|consen 236 ---PLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEFLRIVELLLLVAGHNDTEVIEASF 312 (559)
T ss_pred ---chhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHHHHHhccCCchhhhhhhH
Confidence 12222222233333333455667888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCC
Q 004389 338 NFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSS 417 (757)
Q Consensus 338 ~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~ 417 (757)
.||+++.+.+++..+ ......|+|++.++++.+.++++||+|.++ ..|+.++|.+||..
T Consensus 313 ~fW~~lse~l~~~~~--------------~~~~~~frpy~~rLvs~l~~h~qlp~~~~~-l~Ee~~~f~~fR~~------ 371 (559)
T KOG2081|consen 313 NFWYSLSEELTLTDD--------------DEALGIFRPYFLRLVSLLKRHVQLPPDQFD-LPEEESEFFEFRLK------ 371 (559)
T ss_pred HhhhhhHHHHhcccc--------------HHHHHHhHHHHHHHHHHHHHHccCCCcccc-CccchhHHHHHHHH------
Confidence 999999999876432 235679999999999999999999995333 34566899999999
Q ss_pred cchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHh
Q 004389 418 STLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMA 497 (757)
Q Consensus 418 s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~ 497 (757)
++|+++|+..++|.+.++..++..+.+ +.++|+..||+||.+.+++..+++++++.+|++++
T Consensus 372 -----------v~dvl~Dv~~iigs~e~lk~~~~~l~e-------~~~~We~~EAaLF~l~~~~~~~~~~e~~i~pevl~ 433 (559)
T KOG2081|consen 372 -----------VGDVLKDVAFIIGSDECLKQMYIRLKE-------NNASWEEVEAALFILRAVAKNVSPEENTIMPEVLK 433 (559)
T ss_pred -----------HHHHHHHHHHHhCcHHHHHHHHHHHcc-------CCCchHHHHHHHHHHHHHhccCCccccchHHHHHH
Confidence 999999999999999999999988875 25889999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Q 004389 498 LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (757)
Q Consensus 498 ~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll 577 (757)
.+.++|....+|+|++.++|+|++|+..||+ ++..+++++.+++.... .+.+|+.|+.++|..|+..+.+.++++.
T Consensus 434 ~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~---~le~v~~~~~~~~~~~~-~as~~a~~~~~i~~~c~~~~~~l~~~~~ 509 (559)
T KOG2081|consen 434 LICNLPEQAPLRYTSILLLGEYSEWVEQHPE---LLEPVLRYIRQGLQLKR-LASAAALAFHRICSACRVQMTCLIPSLL 509 (559)
T ss_pred HHhCCccchhHHHHHHHHHHHHHHHHHhCcH---HHHHHHHHHHHHhhhcc-hhHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999997666999999999999999999997 99999999999998877 9999999999999999999999999988
Q ss_pred HHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHH
Q 004389 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP 630 (757)
Q Consensus 578 ~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~ 630 (757)
..+..+.+. .++++... +.+|++.+++.+|.++.+..++.++.|.+..
T Consensus 510 ~l~~~l~~~----~~~~e~a~-l~~~~s~i~~~lp~~k~~~~~~el~~~~l~~ 557 (559)
T KOG2081|consen 510 ELIRSLDST----QINEEAAC-LLQGISLIISNLPAHKAKIALEELCEPQLRN 557 (559)
T ss_pred HHHHHHHHH----hccHHHHH-HHHHHHHHHhcCCHhhhhHHHHHHhhHHHhc
Confidence 888777654 35566777 9999999999999999999999999998754
No 3
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.2e-61 Score=501.38 Aligned_cols=696 Identities=16% Similarity=0.178 Sum_probs=541.4
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
+++|+||+.+...+ .|++.|+||-+|+++++.||.+|.+|.+++...+.++.+||||.|||.++++..+++.+..+++.
T Consensus 2 mddiEqav~a~ndp~vdsa~KqqA~~y~~qiKsSp~aw~Icie~l~~~ts~d~vkf~clqtL~e~vrekyne~nl~elql 81 (980)
T KOG2021|consen 2 MDDIEQAVNAVNDPRVDSATKQQAIEYLNQIKSSPNAWEICIELLINETSNDLVKFYCLQTLIELVREKYNEANLNELQL 81 (980)
T ss_pred chHHHHHHHhhCCCcccHHHHHHHHHHHHhhcCCccHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccCCHHHHHH
Confidence 68899999999876 79999999999999999999999999999987557889999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c----CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCc--hhHHHHHhhhchhh
Q 004389 83 LQDSLNTLLKKF--H----KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEF--VPGFLELLTVLPEE 154 (757)
Q Consensus 83 lr~~Ll~~l~~~--~----~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~--~~~~L~~L~~L~ee 154 (757)
+|..+..|+... . .+|.+++||+++.++.++..+||..|++ ++.++...+..++.. .+..+.+|..+.+|
T Consensus 82 vR~sv~swlk~qvl~ne~~~~p~fi~Nk~aqvlttLf~~eYp~~Wns--fF~dlmsv~~~~s~~~~~dfflkvllaIdsE 159 (980)
T KOG2021|consen 82 VRFSVTSWLKFQVLGNEQTKLPDFIMNKIAQVLTTLFMLEYPDCWNS--FFDDLMSVFQVDSAISGLDFFLKVLLAIDSE 159 (980)
T ss_pred HHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHhhhhhHH--HHHHHHHHHhcccchhhHHHHHHHHHHhhhH
Confidence 999999999863 2 2589999999999999999999999999 999998877665543 78999999999999
Q ss_pred cccccccCChH--HH-HHHHHHH-HHhHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhccCCCCCcccccchhHH
Q 004389 155 VFNYKIAARPE--RR-RQFEKEL-TSQMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (757)
Q Consensus 155 ~~~~~~~~~~~--~r-~~l~~~l-~~~~~~vl~~l~~~l~~------~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~ 224 (757)
+.+.+...+++ +| +.++|.| ..++|.+.+.-.+++.. +++...+|+|+++|+.| ++.+.+.+.++++
T Consensus 160 iad~dv~rT~eei~knnliKDaMR~ndip~lv~~wyqil~~y~n~~npgl~~~cLdc~g~fVSW---IdInLIaNd~f~n 236 (980)
T KOG2021|consen 160 IADQDVIRTKEEILKNNLIKDAMRDNDIPKLVNVWYQILKLYENIVNPGLINSCLDCIGSFVSW---IDINLIANDYFLN 236 (980)
T ss_pred hhhccccCChHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHhhh---hhhhhhhchhHHH
Confidence 99876655543 23 4578888 45667766555554432 46788899999988887 6667788999999
Q ss_pred HHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHH-hcccCCCHHHHHHHHHHHHHHhhHH
Q 004389 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH-LTDSSKDEEDVKAIARLFADMGDSY 303 (757)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~-~~~~~~d~~~~~~~~~l~~~~~~~~ 303 (757)
++++.++.++++.+|++|+.+++++++.+. +++++++.+-. +.++... -.++.+|.|....+.++++.+|...
T Consensus 237 LLy~fl~ieelR~aac~cilaiVsKkMkP~-----dKL~lln~L~q-~l~lfg~~s~dq~~d~df~e~vskLitg~gvel 310 (980)
T KOG2021|consen 237 LLYKFLNIEELRIAACNCILAIVSKKMKPM-----DKLALLNMLNQ-TLELFGYHSADQMDDLDFWESVSKLITGFGVEL 310 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCChh-----HHHHHHHHHHH-HHHHHhhhccccccCchHHHHHHHHHhhcceee
Confidence 999999999999999999999999998543 67887775522 1222111 1234467788899999999999876
Q ss_pred HHHHHc----CCc--------hhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHH
Q 004389 304 VELIAT----GSD--------ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQ 371 (757)
Q Consensus 304 ~~~i~~----~~~--------~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (757)
...+.+ ... .....+..+++...|.+++++...++||+.+...+++.+. . .+
T Consensus 311 ~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdyl~~LKkl~~---l-------------s~ 374 (980)
T KOG2021|consen 311 TIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDYLAFLKKLKA---L-------------SS 374 (980)
T ss_pred ehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHhhccc---c-------------cc
Confidence 554432 111 2446778899999999999999999999999988865321 1 12
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCC---C-CChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHH
Q 004389 372 VFRSAYESLVSLVSFRVQYPQDYQ---D-LSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLK 447 (757)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~---~-~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~ 447 (757)
..+..+.+++.++++|+.|++.+. + -++|+++.|.++|++ .. .+.+....+.|+.++.
T Consensus 375 ~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~Rkk-----------------Lk-~fqdti~~idpsl~l~ 436 (980)
T KOG2021|consen 375 PQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKK-----------------LK-NFQDTIVVIDPSLFLN 436 (980)
T ss_pred hhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHH-----------------HH-HHHHHHHhcCHHHHHH
Confidence 234456788888999999987532 1 223556788999998 54 4445445666676766
Q ss_pred HHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc----c------ccHHHHHhhcC--CCC--ChHHHHHHHH
Q 004389 448 ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE----A------EVMPQVMALLP--KLP--QQPQLLQTVC 513 (757)
Q Consensus 448 ~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~----~------~~l~~l~~~l~--~l~--~~~~l~~t~~ 513 (757)
.+.+.+...+.++. ..+|+.+|+++|.++.+||+.+... + ..+..++..+. +++ +|+.|..-.+
T Consensus 437 ~Ir~slS~al~ns~--e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfm 514 (980)
T KOG2021|consen 437 NIRQSLSAALMNSK--EESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFM 514 (980)
T ss_pred HHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHH
Confidence 66667766655443 5789999999999999999988642 1 22334444332 344 4899999999
Q ss_pred HHHHhhHHHHhhCCCCchhHHHHHHHHH--hccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhC----
Q 004389 514 LTIGAYSKWFDAASSDPSILASVLSILT--SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG---- 586 (757)
Q Consensus 514 ~~ig~~~~~l~~~~~~~~~l~~~l~~l~--~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~---- 586 (757)
+.|.||..||..+++ ++|.++++++ +|+++.+ .|+.+|+|.|.++.+..++.+.|+++.+++.+++++..
T Consensus 515 E~ivRY~kff~~esq---~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkqlvpfie~iln~iqdlL~~~vtt 591 (980)
T KOG2021|consen 515 ELIVRYNKFFSTESQ---KIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQLVPFIEEILNKIQDLLHIKVTT 591 (980)
T ss_pred HHHHHHHHHHhcchh---hhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 999999999999886 8999999987 5787754 69999999999999999999999999999999999931
Q ss_pred ---cCCCCCChhhHHHHHHHHHHHHhc--CChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchh------hHHHH
Q 004389 587 ---EGSLKVSAEDSLHLVEALSMVITE--LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL------TVHID 655 (757)
Q Consensus 587 ---~~~~~l~~~~~~~l~eai~~vi~~--~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~l~ 655 (757)
++....+.+++.+++|++|.+|.. .|+|+...++..++.|++.+..--.....-.++...+..+ ..+++
T Consensus 592 ~N~~s~~lt~fddqlyIfEtiGviI~l~n~paE~qaay~~~litpl~~~~~igl~~a~lasde~~pv~Ia~c~~~lmaig 671 (980)
T KOG2021|consen 592 INAQSDNLTIFDDQLYIFETIGVIITLNNSPAELQAAYANTLITPLILDQIIGLLFAQLASDEASPVVIAECHHILMAIG 671 (980)
T ss_pred cCccccccccccccceeeecceEEEeCCCCCHHHHHHHHhcccChHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 111234578999999999999876 8899999999999999887654433222111121122112 23444
Q ss_pred HHHHHhhhcCC---CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 004389 656 RFAYIFRYVNH---PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (757)
Q Consensus 656 ~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~ 732 (757)
.+++.|..-.. ......++.++..++..++..++..+.++.++...++|++.++|+.+.|++|.++++++++.....
T Consensus 672 ~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~~vlPfipklie~lL~s~d~kE 751 (980)
T KOG2021|consen 672 TLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGNKVLPFIPKLIELLLSSTDLKE 751 (980)
T ss_pred HHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcchhhhcchHHHHHHHHhcCCHHH
Confidence 44444332111 123456677888888888888888999999999999999999999999999999999999999889
Q ss_pred CcchHhhHHHHHHHhCC
Q 004389 733 QPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 733 ~~~~l~~~~~~i~~f~~ 749 (757)
+..|+.+++++|++|+.
T Consensus 752 mvdfl~flsQLihkfk~ 768 (980)
T KOG2021|consen 752 MVDFLGFLSQLIHKFKT 768 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999984
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-43 Score=393.47 Aligned_cols=605 Identities=17% Similarity=0.215 Sum_probs=451.5
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
.++.+.+.++.| .+||+..|++|++.|+..-.++..-.....+++. +.++++|++||+.+|+.+.+.|+.++++.++.
T Consensus 2 ~~~~l~qLl~~l-~spDn~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~-~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~s 79 (1075)
T KOG2171|consen 2 DSAPLEQLLQQL-LSPDNEVRRQAEEALETLAKTEPLLPALAHILAT-SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQS 79 (1075)
T ss_pred chhHHHHHHHHh-cCCCchHHHHHHHHHHHhhcccchHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 357889999999 5779999999999999666655566666777775 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCchhHHHHHhhhchhhccccccc
Q 004389 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEEVFNYKIA 161 (757)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~-~~~~~~~~L~~L~~L~ee~~~~~~~ 161 (757)
||+.||..+.+. ..+.||+|+|.++|.++....++.||+ +++++++..++ ++...+..+.+|..+|+-+++.
T Consensus 80 iks~lL~~~~~E--~~~~vr~k~~dviAeia~~~l~e~WPe--ll~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~--- 152 (1075)
T KOG2171|consen 80 IKSSLLEIIQSE--TEPSVRHKLADVIAEIARNDLPEKWPE--LLQFLFQSTKSPNPSLRESALLILSSLPETFGNT--- 152 (1075)
T ss_pred HHHHHHHHHHhc--cchHHHHHHHHHHHHHHHhccccchHH--HHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccc---
Confidence 999999999884 567899999999999999998889999 99999998876 3456789999999999988753
Q ss_pred CChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcchHHHH
Q 004389 162 ARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEAS 239 (757)
Q Consensus 162 ~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~~~~a 239 (757)
+..+...+..++.++++++ .++..+++++.+.+.+. +.+
T Consensus 153 ------------~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~---~~~------------------------ 193 (1075)
T KOG2171|consen 153 ------------LQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL---ENN------------------------ 193 (1075)
T ss_pred ------------cchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh---ccc------------------------
Confidence 2456778888999988875 36777777777766641 100
Q ss_pred HHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHH
Q 004389 240 VNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVH 319 (757)
Q Consensus 240 ~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~ 319 (757)
....+.+..++|.++...+... .++|++..+.+.+.|++++++.++++. +.+..+++
T Consensus 194 -------------------~~~~~~~~~llP~~l~vl~~~i-~~~d~~~a~~~l~~l~El~e~~pk~l~---~~l~~ii~ 250 (1075)
T KOG2171|consen 194 -------------------KSEVDKFRDLLPSLLNVLQEVI-QDGDDDAAKSALEALIELLESEPKLLR---PHLSQIIQ 250 (1075)
T ss_pred -------------------hHHHHHHHHHhHHHHHHhHhhh-hccchHHHHHHHHHHHHHHhhchHHHH---HHHHHHHH
Confidence 0123455667777665444422 244556778899999999999988885 45778899
Q ss_pred HHhcccccC--ccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCC
Q 004389 320 ALLEVASHP--EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL 397 (757)
Q Consensus 320 ~ll~~~~~~--~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~ 397 (757)
+.+++.++. ++.++..+++|...+.+.... +.....++..+|+.+++..|.--+++++|
T Consensus 251 ~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~-------------------~~k~~~~~~~~lv~~~l~~mte~~~D~ew 311 (1075)
T KOG2171|consen 251 FSLEIAKNKELENSIRHLALEFLVSLSEYAPA-------------------MCKKLALLGHTLVPVLLAMMTEEEDDDEW 311 (1075)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHHHHHhhHH-------------------HhhhchhhhccHHHHHHHhcCCcccchhh
Confidence 999998876 567999999998888876322 23334455566777766555433334566
Q ss_pred Ch-hh--hHHHH-HhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHH
Q 004389 398 SL-ED--LKEFK-HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAA 473 (757)
Q Consensus 398 ~~-d~--~~~f~-~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~ 473 (757)
.. |+ .+++. -+|. +...+..+...+|+..++..+++.+.+.+. +.+|..+.|+
T Consensus 312 ~~~d~~ded~~~~~~~~------------------A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~-----S~~w~~R~Aa 368 (1075)
T KOG2171|consen 312 SNEDDLDEDDEETPYRA------------------AEQALDRLALHLGGKQVLPPLFEALEAMLQ-----STEWKERHAA 368 (1075)
T ss_pred ccccccccccccCcHHH------------------HHHHHHHHHhcCChhhehHHHHHHHHHHhc-----CCCHHHHHHH
Confidence 43 22 12211 1221 223455566789989999999999988763 5789999999
Q ss_pred HHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCC--chhHHHHHHHHHhccCCChH
Q 004389 474 LFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSED 549 (757)
Q Consensus 474 l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~--~~~l~~~l~~l~~~l~~~~~ 549 (757)
|.++++++|++.......++++++++. .+. +||+||+++|.+||+++.-|..+-+. .+.+++.+-.....-.+++
T Consensus 369 L~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~r- 447 (1075)
T KOG2171|consen 369 LLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVR- 447 (1075)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchH-
Confidence 999999999998776678999999864 554 59999999999999999977532111 0244444444433333445
Q ss_pred HHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHH
Q 004389 550 TAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~-~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~ 628 (757)
|+.+||.|+.++.+.|. +.+.||++.+|+....++... -+...++.++.+||+|..+.. +.+.+|... ++
T Consensus 448 V~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~----~~~~v~e~vvtaIasvA~AA~-~~F~pY~d~----~M 518 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQS----SKPYVQEQAVTAIASVADAAQ-EKFIPYFDR----LM 518 (1075)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHh-hhhHhHHHH----HH
Confidence 99999999999999995 567799999999544444331 246789999999999988852 344455444 44
Q ss_pred HHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Q 004389 629 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVR 707 (757)
Q Consensus 629 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~ 707 (757)
..|.+++++... ++....+...+++++.+-+.++. +.+.+..++++.++..+..+.. .|...++....++.++.+
T Consensus 519 p~L~~~L~n~~~---~d~r~LrgktmEcisli~~AVGk-e~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ 594 (1075)
T KOG2171|consen 519 PLLKNFLQNADD---KDLRELRGKTMECLSLIARAVGK-EKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCR 594 (1075)
T ss_pred HHHHHHHhCCCc---hhhHHHHhhHHHHHHHHHHHhhh-hhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHH
Confidence 555667765542 22333455678888888888874 7888999999998877653322 356778999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 004389 708 TSKRFMGITIGAILEEIQGLYQQHQQP 734 (757)
Q Consensus 708 ~~~~~~~p~l~~~~~~l~~~~~~~~~~ 734 (757)
++|++|.||+|.+++-+...-+..|..
T Consensus 595 ilg~~F~p~L~~Vmppl~~ta~~~p~~ 621 (1075)
T KOG2171|consen 595 ILGDDFAPFLPVVMPPLLKTARLDPDV 621 (1075)
T ss_pred HhchhhHhHHHHHhHHHHHhhccCCcc
Confidence 999999999999999998877665543
No 5
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=100.00 E-value=4.3e-40 Score=338.51 Aligned_cols=715 Identities=15% Similarity=0.219 Sum_probs=474.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~l 83 (757)
++-+.+.+..+|. +|...++||++.|.+||..|++|+-+..+|+. +..++.+|.|.++|.+.|.++|.-+|++++.++
T Consensus 13 iallDkVVttfyq-g~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~-S~~pqskyiALs~LdklIttkWkllp~~~r~Gi 90 (1053)
T COG5101 13 IALLDKVVTTFYQ-GDGRKQEQAQRILTKFQELPDAWTKADYILNN-SKLPQSKYIALSLLDKLITTKWKLLPEGMRQGI 90 (1053)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhCchHHHHHHHHHhc-ccCcchhhhHHHHHHHHHHhhhhhCCcHHHHHH
Confidence 4567788888975 57778999999999999999999999999986 788999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhccc
Q 004389 84 QDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN 157 (757)
Q Consensus 84 r~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~~ 157 (757)
|.++++.+..-++ ..+.+.+|+-.++..++++++|+.||+ |++++++..+.+-+.++.-+.+|+.|.||+.+
T Consensus 91 Rnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~--FIpeli~~S~~s~~vCeNnmivLklLsEEvFd 168 (1053)
T COG5101 91 RNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPT--FIPELINVSQISMEVCENNMIVLKLLSEEVFD 168 (1053)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccch--hhHHHHhhccchHHHHhccHHHHHHhHHHHHh
Confidence 9999999887542 246889999999999999999999999 99999976665555678889999999999987
Q ss_pred cc-ccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh---HHHHHHHH---HHHHHhhccCCCCCcccccchhHHHHHhc-
Q 004389 158 YK-IAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLE---AFASWLRLKHRIPGSVLASHPLVLTALSS- 229 (757)
Q Consensus 158 ~~-~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~---~~~~~~l~---~l~~wi~~~~~~~~~~l~~~~ll~~~~~~- 229 (757)
++ ..++..+...+++.|...++.+++++.++++.. ++..++|. |+..|+++ +.+....++.++...
T Consensus 169 fSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiLE~~~~~SLi~ATLesllrfl~wiPl------~yIfeTnIieLv~~~f 242 (1053)
T COG5101 169 FSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQILEYSRDESLIEATLESLLRFLEWIPL------DYIFETNIIELVLEHF 242 (1053)
T ss_pred ccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhCch------hHHHHHHHHHHHHHHh
Confidence 64 233445666788999999999999999998763 45555554 45556554 456667888888765
Q ss_pred cCCcchHHHHHHHHHHHhhhhccCCCCCCC-Cchh-HHHHHHHHHH--------hhHHHhcccCCC-HHHHHHHHHHHHH
Q 004389 230 LHSEILSEASVNVISELIHYSAAGSSGGAT-VNMP-LIQVIVPQIM--------SLKAHLTDSSKD-EEDVKAIARLFAD 298 (757)
Q Consensus 230 L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~-~~~~-~~~~l~~~v~--------~l~~~~~~~~~d-~~~~~~~~~l~~~ 298 (757)
++.|+.+.++++|+.++...++.+..++.. +... .++.+...+. .+...+...+.. ..++..++.++++
T Consensus 243 ~s~pd~r~~tl~CLtEi~~L~~~pq~n~~~~r~~v~~fq~i~~~~~~s~~p~~~d~~e~Y~~~~~neq~Fvq~LA~fL~s 322 (1053)
T COG5101 243 NSMPDTRVATLSCLTEIVDLGRHPQENAEKERILVIHFQCIEFLKMYSNKPQEEDIYEVYGGMDKNEQIFVQKLAQFLSS 322 (1053)
T ss_pred ccCCchhHHHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHHHHhccchHHHHHHHHcccChhHHHHHHHHHHHHHH
Confidence 456899999999999999877543322111 1111 1111111111 122223333333 3678899999999
Q ss_pred HhhHHHHHHHcCC--chhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccC-cc--ccCc-------------cc
Q 004389 299 MGDSYVELIATGS--DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDS-YI--SFGN-------------EA 360 (757)
Q Consensus 299 ~~~~~~~~i~~~~--~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~-~~--~~~~-------------~~ 360 (757)
+.+.+...+.... +........+++++...+.++...++++|..+.-.++..-+ .. .+.+ -|
T Consensus 323 ~~~~~~~lLE~~e~~e~llnah~YLiqiSrInereiFkt~leyW~klVadLy~E~q~lp~tem~Pli~ls~~s~~istnp 402 (1053)
T COG5101 323 LYEVYISLLEAREMAENLLNAHGYLIQISRINEREIFKTALEYWNKLVADLYSEFQRLPATEMSPLIQLSVGSQAISTNP 402 (1053)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCcchhccccchhccCCc
Confidence 9999988875422 12344457788888888999999999999998876653210 00 0000 11
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhc
Q 004389 361 SAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL 440 (757)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l 440 (757)
..+...+-+...|..++++|.-+++++|.-|++.--...|+-+--++|-.+ +++. . +-+.+.+++.++....
T Consensus 403 n~~~~~pLrkhiY~~ilsqLrlvlienMvrPEEVliVendegEivRefvke----tDtI---~-lYksmRevLvyLthL~ 474 (1053)
T COG5101 403 NQDSTKPLRKHIYIGILSQLRLVLIENMVRPEEVLIVENDEGEIVREFVKE----TDTI---E-LYKSMREVLVYLTHLI 474 (1053)
T ss_pred chhcccchHHHHHHHHHHHHHHHHHHcCCCcceEEEEECCCcHHHHHHhcc----ccHh---H-HHHHHhhHHHHHhhhh
Confidence 111122345568889999999999999999986210111111111111111 0000 0 0001556676666554
Q ss_pred ChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhcC------CCC-ChHHHHHHH
Q 004389 441 GGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLP------KLP-QQPQLLQTV 512 (757)
Q Consensus 441 ~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~------~l~-~~~~l~~t~ 512 (757)
- +..-.++...+...+. + ...+|..+...+|++|+|+...+++. ..++..++..+. +.. ....|....
T Consensus 475 v-~Dte~~mi~Klarq~d--g-~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnI 550 (1053)
T COG5101 475 V-DDTEKYMIGKLARQLD--G-KEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNI 550 (1053)
T ss_pred h-hhHHHHHHHHHHHHhc--C-CccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecce
Confidence 4 3355555555554332 2 26789999999999999999998764 466667766542 222 357888899
Q ss_pred HHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHH
Q 004389 513 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTA 583 (757)
Q Consensus 513 ~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~~~~~l~--------p~l~~ll~~~~~l 583 (757)
+.++|+|.+|+.+|.. +|.+++..++..|+.. +.|+.+||..|-++++.|+.+.. |++..|+.-+...
T Consensus 551 MyvvGQYpRFLkahw~---FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~kt 627 (1053)
T COG5101 551 MYVVGQYPRFLKAHWS---FLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKT 627 (1053)
T ss_pred eeeeccchHHHHHHHH---HHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhh
Confidence 9999999999999986 9999999999999764 36999999999999999987654 5565555554443
Q ss_pred hhCcCCCCCChhhHHHHHHHHHHHHhcCChHHH-HHHHHHhhhhHHHHHHHHHhcCCCcccccCcchh--hHHHHHHHHH
Q 004389 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDA-KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL--TVHIDRFAYI 660 (757)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~-~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~l~~l~~~ 660 (757)
.. .+.+......+||.|.+|+..|...- ...+..+++-....+.++..+..++...-..... ..+-.+.+.+
T Consensus 628 T~-----dL~pqQ~htfYeAcg~vIse~p~~~~~~rlv~dlm~Lpn~aw~niv~qa~~n~~~L~d~~tvki~an~~ktnV 702 (1053)
T COG5101 628 TG-----DLEPQQKHTFYEACGMVISEVPKTRDYKRLVLDLMDLPNSAWLNIVIQADENINRLSDTMTVKIDANKMKTNV 702 (1053)
T ss_pred cc-----cCChHHHhHHHHHHhHHHhccchhhHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHH
Confidence 22 47778888999999999999986633 3455566666666677766554432210000000 0111112222
Q ss_pred hhh--cCC---CcchHHHHHHHHHHHHHHHH---h---c----------CCCHHHHHHHHHHHHHHHH---Hhhhhhhhh
Q 004389 661 FRY--VNH---PEAVADAIQRLWPIFKAIFD---I---R----------AWDMRTMESLCRACKYAVR---TSKRFMGIT 716 (757)
Q Consensus 661 ~~~--~~~---~~~~~~~~~~~~~~l~~~l~---~---~----------~~~~~v~e~~~~~~~~~~~---~~~~~~~p~ 716 (757)
..+ ++. |+.+.....++.+....... . - .+--.|...+..++..-+. .++--.-.+
T Consensus 703 a~ctslg~~fyPq~~~~y~~ml~ly~avs~~Is~~vaaeg~iatktp~vrglrtiKkEIlkLv~tyIska~dl~~V~n~l 782 (1053)
T COG5101 703 AKCTSLGYRFYPQTCSSYCIMLFLYFAVSFDISNSVAAEGLIATKTPAVRGLRTIKKEILKLVATYISKARDLKFVQNDL 782 (1053)
T ss_pred HHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccchHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 211 111 44444444444443221110 0 0 0011122233333333222 111123367
Q ss_pred HHHHHHHHHHHHhhc-C---CcchHhhHHHHHHHhC
Q 004389 717 IGAILEEIQGLYQQH-Q---QPCFLYLSSEVIKVVF 748 (757)
Q Consensus 717 l~~~~~~l~~~~~~~-~---~~~~l~~~~~~i~~f~ 748 (757)
++++++.++..|..+ | -+..|.+.+.+|...+
T Consensus 783 v~~l~eaVl~DY~nNvPdardaevLnl~ttiV~~v~ 818 (1053)
T COG5101 783 VNMLCEAVLFDYKNNVPDARDAEVLNLGTTIVRNVE 818 (1053)
T ss_pred HHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHH
Confidence 788889888888764 3 4668888888887765
No 6
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.2e-39 Score=334.76 Aligned_cols=619 Identities=16% Similarity=0.248 Sum_probs=446.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 004389 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (757)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~l 83 (757)
++|.+.++.- .+||++.|+.+...|.+++..|+.-.+...+|.. .+.+..+|..|..+|||.++.+|..++++....+
T Consensus 13 ~ql~~lLk~s-~Spn~~~~~~~~~~leq~~~~pdfnnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr~~~~~~~~~~~~yi 91 (885)
T KOG2023|consen 13 QQLAQLLKNS-QSPNSETRNNVQEKLEQFNLFPDFNNYLIYILIRAKSEDVPTRSLAGLLLKNNVRGHYNSIPSEVLDYI 91 (885)
T ss_pred HHHHHHHHhc-cCCChHHHHHHHHHHHHHhcccchhceeeEEEecccccchhHHHHhhhhHhccccccccCCChHHHHHH
Confidence 3444445444 4689999999999999999999988877777764 2456789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhcccccccC
Q 004389 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKIAA 162 (757)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~~~~~~~~ 162 (757)
|+.+++.+.. .++.||+-.+..+.+|+...+-..||+ +++.|.+.+.+.. +.++..+.-|+.++|+....-.
T Consensus 92 Ks~~l~~lgd---~~~lIr~tvGivITTI~s~~~~~~wpe--lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~ld-- 164 (885)
T KOG2023|consen 92 KSECLHGLGD---ASPLIRATVGIVITTIASTGGLQHWPE--LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLD-- 164 (885)
T ss_pred HHHHHhhccC---chHHHHhhhhheeeeeecccccccchh--HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHh--
Confidence 9999998876 556899999999999998887789999 9999999887643 5678889999999887432100
Q ss_pred ChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcchHHHHHHH
Q 004389 163 RPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNV 242 (757)
Q Consensus 163 ~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~~~~a~~~ 242 (757)
+.-..+-|+-.+|..++++.+. ++.++..+++|+...|-.- ...+.
T Consensus 165 ----s~~~~rpl~~mipkfl~f~~h~--spkiRs~A~~cvNq~i~~~---------~qal~------------------- 210 (885)
T KOG2023|consen 165 ----SDVLTRPLNIMIPKFLQFFKHP--SPKIRSHAVGCVNQFIIIQ---------TQALY------------------- 210 (885)
T ss_pred ----hhcccCchHHhHHHHHHHHhCC--ChhHHHHHHhhhhheeecC---------cHHHH-------------------
Confidence 0001122455556666666554 3456777777777655421 00110
Q ss_pred HHHHhhhhccCCCCCCCCch-hHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHH
Q 004389 243 ISELIHYSAAGSSGGATVNM-PLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHAL 321 (757)
Q Consensus 243 l~~ii~~~~~~~~~~~~~~~-~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~l 321 (757)
.+. ++++.+|. ++ .++|++..+.+|+-|+-+.+..+..+. ++...++++|
T Consensus 211 -----------------~~iD~Fle~lFa--------la-nD~~~eVRk~vC~alv~Llevr~dkl~---phl~~IveyM 261 (885)
T KOG2023|consen 211 -----------------VHIDKFLEILFA--------LA-NDEDPEVRKNVCRALVFLLEVRPDKLV---PHLDNIVEYM 261 (885)
T ss_pred -----------------HHHHHHHHHHHH--------Hc-cCCCHHHHHHHHHHHHHHHHhcHHhcc---cchHHHHHHH
Confidence 011 12222221 12 467788999999999999888887775 4577899999
Q ss_pred hcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCC---C-C
Q 004389 322 LEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQ---D-L 397 (757)
Q Consensus 322 l~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~---~-~ 397 (757)
|..+..++++|+-.+.+||..+++.-. ....+.|++.+++.+++..|.|-++.. + -
T Consensus 262 L~~tqd~dE~VALEACEFwla~aeqpi--------------------~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~ 321 (885)
T KOG2023|consen 262 LQRTQDVDENVALEACEFWLALAEQPI--------------------CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNN 321 (885)
T ss_pred HHHccCcchhHHHHHHHHHHHHhcCcC--------------------cHHHHHHHHHHHHHHHHccCccccccHHHhcCc
Confidence 999999999999999999999887321 135788999999999999999965310 0 0
Q ss_pred Chh----hhH-----HHHH--------------------------hhhcccccCCcchhhhhhhhhhhhHHHhhhhhcCh
Q 004389 398 SLE----DLK-----EFKH--------------------------TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG 442 (757)
Q Consensus 398 ~~d----~~~-----~f~~--------------------------~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~ 442 (757)
++| |.| .|.. --.++|.|+++ +.|++. .+.|
T Consensus 322 eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAA----------aLDVLa---nvf~- 387 (885)
T KOG2023|consen 322 EEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAA----------ALDVLA---NVFG- 387 (885)
T ss_pred cccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHH----------HHHHHH---HhhH-
Confidence 000 000 0100 00124444443 445554 4567
Q ss_pred hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhH
Q 004389 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYS 520 (757)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~ 520 (757)
++++..+...+.+.+. ...|..+||+++++|+|||++...-.+++|.+++.+. .+. ..|.||..+||+++||+
T Consensus 388 ~elL~~l~PlLk~~L~-----~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys 462 (885)
T KOG2023|consen 388 DELLPILLPLLKEHLS-----SEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYS 462 (885)
T ss_pred HHHHHHHHHHHHHHcC-----cchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhh
Confidence 7799999999988763 4789999999999999999998887888998888764 343 37999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcc-CCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHH
Q 004389 521 KWFDAASSDPSILASVLSILTSGM-STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLH 599 (757)
Q Consensus 521 ~~l~~~~~~~~~l~~~l~~l~~~l-~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~ 599 (757)
+|....+. .+++.+++.-+++.+ +.+++|+.+||.||..+-++...+|.||+..|++.+-..++. .....-.-
T Consensus 463 ~wv~~~~~-~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~k-----YQ~KNLlI 536 (885)
T KOG2023|consen 463 KWVVQDSR-DEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGK-----YQKKNLLI 536 (885)
T ss_pred hhHhcCCh-HhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-----Hhhcceeh
Confidence 99987653 258888888766554 555579999999999999999999999999999988777763 33455678
Q ss_pred HHHHHHHHHhcCChH-HHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC------------
Q 004389 600 LVEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH------------ 666 (757)
Q Consensus 600 l~eai~~vi~~~~~e-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~------------ 666 (757)
+|.|||.+..+++.. ....|++-++.|+++.++.+-... +.+.-.+++++.+..+++.
T Consensus 537 LYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~D---------KdLfPLLEClSsia~AL~~gF~P~~~~Vy~R 607 (885)
T KOG2023|consen 537 LYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSD---------KDLFPLLECLSSIASALGVGFLPYAQPVYQR 607 (885)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCccc---------chHHHHHHHHHHHHHHHhccccccCHHHHHH
Confidence 999999999998655 345789999999999987653221 1222223333333333220
Q ss_pred -----------------------C--------------------cchHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004389 667 -----------------------P--------------------EAVADAI--QRLWPIFKAIFDIRAWDMRTMESLCRA 701 (757)
Q Consensus 667 -----------------------~--------------------~~~~~~~--~~~~~~l~~~l~~~~~~~~v~e~~~~~ 701 (757)
| ..+-+.+ +.+..++...+.. .-++|+++++.+
T Consensus 608 c~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D--~~peVRQS~FAL 685 (885)
T KOG2023|consen 608 CFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD--EVPEVRQSAFAL 685 (885)
T ss_pred HHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc--CChHHHHHHHHH
Confidence 0 0000110 1233333332221 358999999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---cchHhhHHHHHHHhCCc
Q 004389 702 CKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKVVFPP 750 (757)
Q Consensus 702 ~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~~~~~~i~~f~~~ 750 (757)
++.+.+.+-+++.|++..++..+...+..... ....|.++.+..++|.+
T Consensus 686 LGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 686 LGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchh
Confidence 99999999999999999999999877665443 33689999999999875
No 7
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.5e-35 Score=316.94 Aligned_cols=642 Identities=14% Similarity=0.183 Sum_probs=452.8
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCC---------C
Q 004389 5 NTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE---------L 75 (757)
Q Consensus 5 ~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~---------l 75 (757)
+.+.+++.+-.. +||+.|+.||+.|++++++|+....+++++.+...+..||+.||.+|||+|.+.|+. +
T Consensus 4 ~~l~~~~~~T~d-~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I 82 (1010)
T KOG1991|consen 4 QSLLQIFRATID-SDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGI 82 (1010)
T ss_pred HHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCC
Confidence 445566666534 469999999999999999999999999999876667789999999999999999964 5
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhh
Q 004389 76 PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE 154 (757)
Q Consensus 76 ~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee 154 (757)
++++|..+|++++..+.+ +|..+|.++..++-.|...++|++||+ +++.+-..++++. +++...|.+|..|..-
T Consensus 83 ~e~dk~~irenIl~~iv~---~p~~iRvql~~~l~~Ii~~D~p~~Wp~--l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ 157 (1010)
T KOG1991|consen 83 PEEDKAVIRENILETIVQ---VPELIRVQLTACLNTIIKADYPEQWPG--LLDKIKNLLQSQDANHVYGALLCLYQLFKT 157 (1010)
T ss_pred ChHHHHHHHHHHHHHHHh---CchHHHHHHHHHHHHHHhcCCcccchh--HHHHHHHHhcCcchhhHHHHHHHHHHHHHH
Confidence 789999999999999998 799999999999999999999999998 9999888887654 3456777787777543
Q ss_pred cccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhc
Q 004389 155 VFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS 229 (757)
Q Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~-----~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~ 229 (757)
.. .. ..++|.-+...+...+|.++++..+.+..+ ++.+.++|.|.+.+.+ ++|..
T Consensus 158 ye---~k-~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~--~LP~~-------------- 217 (1010)
T KOG1991|consen 158 YE---WK-KDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY--ELPLE-------------- 217 (1010)
T ss_pred Hh---hc-cccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH--hCCHH--------------
Confidence 22 21 245677788889999999999999988764 5788999999999998 46642
Q ss_pred cCCcchHHHHHHHHHHHhhhhccCC--CCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHH-
Q 004389 230 LHSEILSEASVNVISELIHYSAAGS--SGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL- 306 (757)
Q Consensus 230 L~~~~~~~~a~~~l~~ii~~~~~~~--~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~- 306 (757)
|.+++.+..|++.+..+++++.+.. +.|++++ .-.||+-. . .+.++.+.|+|..+|......
T Consensus 218 L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R-----~~~~wwK~--K--------KWa~~~L~Rlf~Ryg~~~~~~~ 282 (1010)
T KOG1991|consen 218 LSAPETFTSWMELFLSILNRPVPVEVLSLDPEDR-----SSWPWWKC--K--------KWALHILNRLFERYGSPSLVVP 282 (1010)
T ss_pred hhCchhHHHHHHHHHHHHcCCCChhcccCChhhc-----ccccchhh--H--------HHHHHHHHHHHHHhCCccccch
Confidence 5678889999999999998875421 1122221 11222100 0 123445555555555422111
Q ss_pred --------HHcCCchhHHHHHHHhccccc------CccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHh
Q 004389 307 --------IATGSDESMLIVHALLEVASH------PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQV 372 (757)
Q Consensus 307 --------i~~~~~~~~~~l~~ll~~~~~------~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
+.+ +-+..+++..++.+.. -.++|-..++.|. ...+. +...+..
T Consensus 283 ~y~~Fa~~f~~--n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl---~~~Vs-----------------~~~twkl 340 (1010)
T KOG1991|consen 283 EYKEFAQMFLK--NFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFL---EQCVS-----------------HASTWKL 340 (1010)
T ss_pred hhHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH---HHhcc-----------------HHHHHHH
Confidence 000 0122333444433221 1234444555552 22222 1246889
Q ss_pred hHHHHHHHHHHHH-hhccCCC-CCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChh---HHHH
Q 004389 373 FRSAYESLVSLVS-FRVQYPQ-DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD---ATLK 447 (757)
Q Consensus 373 ~~~~~~~ll~~l~-~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~---~~l~ 447 (757)
++|++.-++.-++ .-|.+-+ |.+.|+.|. .+|-+...|+-+++.|+.+ |+.+++..++...|++ .+++
T Consensus 341 l~PHl~~ii~~vIFPlmc~~d~deelwe~DP-~EYiR~~~Di~ed~~sp~~------Aa~~~l~~~~~KR~ke~l~k~l~ 413 (1010)
T KOG1991|consen 341 LKPHLQVIIQDVIFPLMCFNDEDEELWEEDP-YEYIRKKFDIFEDGYSPDT------AALDFLTTLVSKRGKETLPKILS 413 (1010)
T ss_pred hhhHHHHHHHHhhhhhcCCCcccHHHHhcCH-HHHHHhcCchhcccCCCcH------HHHHHHHHHHHhcchhhhhhHHH
Confidence 9999877765433 3333322 344566443 4554444455556666532 4778888899888754 5666
Q ss_pred HHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcccc--ccHHHHHh-h-cCCCCC-hHHHHHHHHHHHHhhHHH
Q 004389 448 ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA--EVMPQVMA-L-LPKLPQ-QPQLLQTVCLTIGAYSKW 522 (757)
Q Consensus 448 ~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~--~~l~~l~~-~-l~~l~~-~~~l~~t~~~~ig~~~~~ 522 (757)
++++.++++-.++. +..+.|.+|+||++++++++.+..... ..+..++. + +|.+.+ -..+|..+|+++++|++-
T Consensus 414 F~~~Il~~~~~~~~-~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~ 492 (1010)
T KOG1991|consen 414 FIVDILTRYKEASP-PNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSI 492 (1010)
T ss_pred HHHHHHHhhcccCC-CccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhc
Confidence 66677766543332 256889999999999999977765432 33444333 3 355543 689999999999999963
Q ss_pred HhhCCCCchhHHHHHHHHHhccC-CCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhCcCCCCCChhhH
Q 004389 523 FDAASSDPSILASVLSILTSGMS-TSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (757)
Q Consensus 523 l~~~~~~~~~l~~~l~~l~~~l~-~~~-~v~~~Aa~al~~l~~~~~~---~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~ 597 (757)
=.+++. .+..++....++|. +++ +|+..||.|++.|..+|.. .+.|+++++|+.+..+.+. ...++-
T Consensus 493 df~d~~---~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne-----~End~L 564 (1010)
T KOG1991|consen 493 DFKDPN---NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE-----VENDDL 564 (1010)
T ss_pred cCCChH---HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh-----cchhHH
Confidence 333454 78889998888887 443 6999999999999999874 4889999999999998763 456777
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcc--cccCcchhhHHHHHHHHHhhhcCC-CcchHHHH
Q 004389 598 LHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL--QKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAI 674 (757)
Q Consensus 598 ~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~ 674 (757)
..+|+.+ +...+ |++.++...+++.+.+...+++++..... +++..-....++++|++++.+++. |+....+.
T Consensus 565 t~vme~i---V~~fs-eElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le 640 (1010)
T KOG1991|consen 565 TNVMEKI---VCKFS-EELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLE 640 (1010)
T ss_pred HHHHHHH---HHHHH-HhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 7788777 56664 77788999999999999999998622111 111122345688999999999875 44456677
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 004389 675 QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (757)
Q Consensus 675 ~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~ 732 (757)
..+.|++..++++.. .++.|.++.+... ..++-+.+.|-+..+++.+.+.|+...
T Consensus 641 ~~~l~vi~~iL~~~i--~dfyeE~~ei~~~-~t~~~~~Isp~mW~ll~li~e~~~~~~ 695 (1010)
T KOG1991|consen 641 PIVLPVIGFILKNDI--TDFYEELLEIVSS-LTFLSKEISPIMWGLLELILEVFQDDG 695 (1010)
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHhh-hhhhhcccCHHHHHHHHHHHHHHhhhh
Confidence 788899988888743 4777887776554 556677788888888888888887655
No 8
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.3e-31 Score=279.42 Aligned_cols=594 Identities=15% Similarity=0.183 Sum_probs=420.5
Q ss_pred CCCHHHHHHHHHHHHHHhcChh--HHHHHHHHhhcCCCChHHHHHHHHHHHHHhh-----------cCCCCCChhhHHHH
Q 004389 17 HPDDAVRMQADRWLQDFQHTID--AWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (757)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~--aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~-----------~~w~~l~~e~~~~l 83 (757)
+||+..|++|+++|.+++.++- ......+.|.+...+..+|..|+.+|||-+. .+|.+++.|.|+.+
T Consensus 12 SpD~n~~~~Ae~~l~~~~~~nf~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~~~~qRWl~l~~e~reqV 91 (859)
T KOG1241|consen 12 SPDQNVRKRAEKQLEQAQSQNFPQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQQYQQRWLQLPAEIREQV 91 (859)
T ss_pred CCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 6799999999999999998653 3445566676666778999999999999664 35999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hccccccCCccchHHHHHhcCCCCCc--hhHHHHHhhhchhhcccccc
Q 004389 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAV-HISAEDWGGGGIVNWLRDEMNSHPEF--VPGFLELLTVLPEEVFNYKI 160 (757)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~-~~~~~~W~~~~~~~~l~~~~~~~~~~--~~~~L~~L~~L~ee~~~~~~ 160 (757)
|..++..|.. ..+...+--++++|.++. ..|.+.||+ ++..+.......+.. ....|+.+.+++|++..
T Consensus 92 K~~il~tL~~---~ep~~~s~Aaq~va~IA~~ElP~n~wp~--li~~lv~nv~~~~~~~~k~~slealGyice~i~p--- 163 (859)
T KOG1241|consen 92 KNNILRTLGS---PEPRRPSSAAQCVAAIACIELPQNQWPE--LIVTLVSNVGEEQASMVKESSLEALGYICEDIDP--- 163 (859)
T ss_pred HHHHHHHcCC---CCCCccchHHHHHHHHHHhhCchhhCHH--HHHHHHHhcccccchHHHHHHHHHHHHHHccCCH---
Confidence 9999999875 223445557788888886 556689999 999999888754432 36889999999998752
Q ss_pred cCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhccC-CCCCcccccchhHHHHHhccCCc--
Q 004389 161 AARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHSE-- 233 (757)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~l~~wi~~~~-~~~~~~l~~~~ll~~~~~~L~~~-- 233 (757)
+.+....+.++.-+.+....+ .++..+++|+..-++|.. ++..+ ..++.+++.+++.-+.|
T Consensus 164 -----------evl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvcEatq~~d~ 231 (859)
T KOG1241|consen 164 -----------EVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVCEATQSPDE 231 (859)
T ss_pred -----------HHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeeeecccCCcH
Confidence 246677788887777776653 589999999998888754 34322 24556777777776654
Q ss_pred chHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCch
Q 004389 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (757)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 313 (757)
++..+|+.||+.|++... +.+..- +
T Consensus 232 ~i~~aa~~ClvkIm~LyY-----------~~m~~y--------------------------------------M------ 256 (859)
T KOG1241|consen 232 EIQVAAFQCLVKIMSLYY-----------EFMEPY--------------------------------------M------ 256 (859)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHH--------------------------------------H------
Confidence 567888999988886442 111110 0
Q ss_pred hHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhccc-CccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCC
Q 004389 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD-SYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (757)
Q Consensus 314 ~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~ 392 (757)
...++..-+.....++++|...+++||.+++++-.+.- +|. +....+ ..+......+.-+..+++++++.+...+
T Consensus 257 ~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~---e~~d~~-~~p~~~~fa~~a~~~v~P~Ll~~L~kqd 332 (859)
T KOG1241|consen 257 EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYG---EAVDQG-LPPSSKYFARQALQDVVPVLLELLTKQD 332 (859)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcC-CCchhhHHHHHHHhHhhHHHHHHHHhCC
Confidence 01122333444557788999999999999887643310 010 000000 0011122333345667777777776532
Q ss_pred -C--CCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcch
Q 004389 393 -D--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRP 469 (757)
Q Consensus 393 -d--~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (757)
+ .++|+. ..|++-+|.=.+..+| |.+++++...+.+.+. +++|+.
T Consensus 333 e~~d~DdWnp--------------------------~kAAg~CL~l~A~~~~-D~Iv~~Vl~Fiee~i~-----~pdwr~ 380 (859)
T KOG1241|consen 333 EDDDDDDWNP--------------------------AKAAGVCLMLFAQCVG-DDIVPHVLPFIEENIQ-----NPDWRN 380 (859)
T ss_pred CCcccccCcH--------------------------HHHHHHHHHHHHHHhc-ccchhhhHHHHHHhcC-----Ccchhh
Confidence 2 223331 1236677777777788 7788888888887752 588999
Q ss_pred hhHHHHHHHHhhcccCccc-cccHHHHHhhcCCC--CChHHHHHHHHHHHHhhHHHHhh--CCCCchhHHHHHHHHHhcc
Q 004389 470 AEAALFCIRAISTYVSVVE-AEVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGM 544 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l--~~~~~l~~t~~~~ig~~~~~l~~--~~~~~~~l~~~l~~l~~~l 544 (757)
+|++.++++++-++-.+.. ...+++.++.+..+ .+...++.|+-|++|+.++++.. .++ .++++.+..+..|+
T Consensus 381 reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~--~~l~~~l~~l~~gL 458 (859)
T KOG1241|consen 381 REAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQ--ELLQSKLSALLEGL 458 (859)
T ss_pred hhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccH--hhhhHHHHHHHHHh
Confidence 9999999999998865543 23333333333211 33567889999999999998864 233 58999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhh---------hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHH
Q 004389 545 STSEDTAAAAALAFRHICDDCRK---------KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (757)
Q Consensus 545 ~~~~~v~~~Aa~al~~l~~~~~~---------~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~ 615 (757)
.+.+++...+|+||..|++.|.+ ...|+.+.|++.+.......+ .=...-|...|+|++-+|...| +.
T Consensus 459 ~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~d--gnqsNLR~AAYeALmElIk~st-~~ 535 (859)
T KOG1241|consen 459 NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRAD--GNQSNLRSAAYEALMELIKNST-DD 535 (859)
T ss_pred hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccc--cchhhHHHHHHHHHHHHHHcCc-HH
Confidence 77555999999999999998754 233677888888777654321 1234568899999999999976 44
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcCCCcccc-cCcchhhH-HHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHH
Q 004389 616 AKKALEMLCLPVVTPLQEIINQGPEILQK-KHPRDLTV-HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMR 693 (757)
Q Consensus 616 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 693 (757)
..+...++..-++.+|.++++...-+..+ .....+.. ....++.+.|-+. +.+.++.+++|..+.++++. +.+.-
T Consensus 536 vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~--~~~~~~~d~iM~lflri~~s-~~s~~ 612 (859)
T KOG1241|consen 536 VYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG--SDIREVSDQIMGLFLRIFES-KRSAV 612 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc--ccchhHHHHHHHHHHHHHcC-Ccccc
Confidence 45677888889999999999832222111 11112222 3367777777765 36778889999999999988 66777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 004389 694 TMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 694 v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
+.|.++.++..++..+|+.|..|+|.+.+++..+.+
T Consensus 613 v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~ 648 (859)
T KOG1241|consen 613 VHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLS 648 (859)
T ss_pred chHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999999999988774
No 9
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-30 Score=278.37 Aligned_cols=621 Identities=15% Similarity=0.178 Sum_probs=388.5
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCC-------
Q 004389 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------- 73 (757)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~------- 73 (757)
|..++++.+.++.-. .|||+.|+-||+.|++.+.+++--...+.|+.++..+.++|..||..+||.|+++|.
T Consensus 1 ~~~le~l~~~l~qTl-~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~ 79 (960)
T KOG1992|consen 1 DANLETLANYLLQTL-SPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPI 79 (960)
T ss_pred CccHHHHHHHHHhcC-CCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCcc
Confidence 566788888887763 569999999999999999987766667788877666889999999999999999995
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhch
Q 004389 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLP 152 (757)
Q Consensus 74 ~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ 152 (757)
.+.++++..+|..++.++.+ .|..++.||..+|..++.+++|+.||+ ++++++..+++++ .....+|..-..+
T Consensus 80 ~i~~~~~e~ikslIv~lMl~---s~~~iQ~qlseal~~Ig~~DFP~kWpt--Ll~dL~~~ls~~D~~~~~gVL~tahsi- 153 (960)
T KOG1992|consen 80 KIIEEDREQIKSLIVTLMLS---SPFNIQKQLSEALSLIGKRDFPDKWPT--LLPDLVARLSSGDFNVINGVLVTAHSI- 153 (960)
T ss_pred ccchhHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHhccccchhhHH--HHHHHHhhccccchHHHHHHHHHHHHH-
Confidence 45667899999999999987 688999999999999999999999999 9999999998654 2334555544433
Q ss_pred hhcccccccCChHHHHHHHHHHHHhHH----HHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHh
Q 004389 153 EEVFNYKIAARPERRRQFEKELTSQME----VALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS 228 (757)
Q Consensus 153 ee~~~~~~~~~~~~r~~l~~~l~~~~~----~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~ 228 (757)
+.+.|. .-|-.++-.++..+.. ...+++.+..+-.+....--..+..|.+. --++..+|.
T Consensus 154 --Fkr~R~---efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~v-----------lll~~klfy 217 (960)
T KOG1992|consen 154 --FKRYRP---EFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGV-----------LLLICKLFY 217 (960)
T ss_pred --HHhcCc---ccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHH-----------HHHHHHHHH
Confidence 222221 1111222222222222 22222222111000000000122223221 012222333
Q ss_pred ccCC---cchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCH-----HHHHHHHHHHHHHh
Q 004389 229 SLHS---EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDE-----EDVKAIARLFADMG 300 (757)
Q Consensus 229 ~L~~---~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~-----~~~~~~~~l~~~~~ 300 (757)
.|.. |+.+ ++|++.+...|-..+++-....++++.+ +.-..+|+++.-+.
T Consensus 218 sLn~QDiPEFF----------------------Ednm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~ 275 (960)
T KOG1992|consen 218 SLNFQDIPEFF----------------------EDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYA 275 (960)
T ss_pred hhhcccchHHH----------------------HhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHH
Confidence 3332 2222 2333333333322222211111121111 12236777777766
Q ss_pred hHHHHHHHcCCchhHHHH-HHHhcccccCcc-chhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHH-
Q 004389 301 DSYVELIATGSDESMLIV-HALLEVASHPEY-DIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY- 377 (757)
Q Consensus 301 ~~~~~~i~~~~~~~~~~l-~~ll~~~~~~~~-~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 377 (757)
+.|-.-+..--+++...+ +++...+.++.+ -....++.|...+.+. + .|..+|
T Consensus 276 ~kYeEef~~fl~~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r----~--------------------~y~~~F~ 331 (960)
T KOG1992|consen 276 TKYEEEFQPFLPDFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRR----P--------------------HYAELFE 331 (960)
T ss_pred HhhHHHHHhhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhh----h--------------------hhHhhhc
Confidence 665443321112233222 444445556654 4667889997665532 1 122222
Q ss_pred -HHHHHHHHhhccCCCCCCCCChhhhHHHH-----Hhhhcccc-cCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHH
Q 004389 378 -ESLVSLVSFRVQYPQDYQDLSLEDLKEFK-----HTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILY 450 (757)
Q Consensus 378 -~~ll~~l~~k~~~p~d~~~~~~d~~~~f~-----~~R~~~~~-~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~ 450 (757)
...+..+++++..|.-. ...+|.|-|. -.|+|++| |..+ |||++.|+++.++.... ..+...+.
T Consensus 332 ~~~vl~~i~e~VvlpN~~--lR~eDeElFED~pleYiRRDlEGsDvdT------RRR~a~dlvrgL~~~fe-~~vt~v~~ 402 (960)
T KOG1992|consen 332 GENVLAQICEKVVLPNLI--LREEDEELFEDNPLEYIRRDLEGSDVDT------RRRAAIDLVRGLCKNFE-GQVTGVFS 402 (960)
T ss_pred chHHHHHHHHhhcccccc--cchhhHHHhccCHHHHHHHhcccCCcch------hHHHHHHHHHHHHHHhc-chhHHHHH
Confidence 45677788888888631 1112222222 37889888 6664 89999999999988775 44444444
Q ss_pred HHHHHhHhh-CCCCCCCcchhhHHHHHHHHhhcccCccc------ccc--H-----HHHHhhcCC--CCChHHHHHHHHH
Q 004389 451 IKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVE------AEV--M-----PQVMALLPK--LPQQPQLLQTVCL 514 (757)
Q Consensus 451 ~~l~~~~~~-~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~------~~~--l-----~~l~~~l~~--l~~~~~l~~t~~~ 514 (757)
..++..+.+ +.+++.+|..++.++|.+.+++-...... ++. + .++++.|.+ ...||.++..+++
T Consensus 403 ~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIK 482 (960)
T KOG1992|consen 403 SEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIK 482 (960)
T ss_pred HHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccc
Confidence 444333321 34567899999999999999986543221 111 2 233333322 2348999999999
Q ss_pred HHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---------hhcCCHHHHHHHHHHHh
Q 004389 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---------KLCGYLDGLYNVYRTAV 584 (757)
Q Consensus 515 ~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---------~l~p~l~~ll~~~~~l~ 584 (757)
.+--|...+.. +++-.+++.+.+++..+. .|..+||+++.++-.-|.. .+.|++..+++.+...+
T Consensus 483 y~~~FR~ql~~-----~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~ 557 (960)
T KOG1992|consen 483 YIYTFRNQLGK-----EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKAL 557 (960)
T ss_pred eeeeecccCCh-----HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhc
Confidence 99887765542 377888888888886643 5999999999998754433 46688888888877776
Q ss_pred hCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhc
Q 004389 585 NGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYV 664 (757)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 664 (757)
+.++ ..+.+++|++|.++++..+ + .+.....+++..|-+++....+++.+ +....+.++.++.+++..
T Consensus 558 s~p~-----~~EneylmKaImRii~i~~-~----~i~p~~~~~l~~Lteiv~~v~KNPs~--P~fnHYLFEsi~~li~~t 625 (960)
T KOG1992|consen 558 SLPG-----KAENEYLMKAIMRIISILQ-S----AIIPHAPELLRQLTEIVEEVSKNPSN--PQFNHYLFESIGLLIRKT 625 (960)
T ss_pred cCCc-----ccccHHHHHHHHHHHHhCH-H----hhhhhhhHHHHHHHHHHHHHhcCCCC--chhHHHHHHHHHHHHHHH
Confidence 5432 2567999999999999864 2 23344556666666666666665543 444557889999999987
Q ss_pred CC--CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh----hhhhhHH
Q 004389 665 NH--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR----FMGITIG 718 (757)
Q Consensus 665 ~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~----~~~p~l~ 718 (757)
.. |..+..+..+++|++..++.. .-.+++-.++..+...+...+. .+.|++|
T Consensus 626 ~~~~~~~vs~~e~aL~p~fq~Il~e--DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~ 683 (960)
T KOG1992|consen 626 CKANPSAVSSLEEALFPVFQTILSE--DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFP 683 (960)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 64 444667889999999999875 1245566677777777776655 4444444
No 10
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.3e-24 Score=222.90 Aligned_cols=594 Identities=14% Similarity=0.135 Sum_probs=380.1
Q ss_pred CCCHHHHHHHHHHHHHHhcChhH--HHHHHHHhhcCCCChHHHHHHHHHHHHHhh-----------cCCCCCChhhHHHH
Q 004389 17 HPDDAVRMQADRWLQDFQHTIDA--WQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDVEELPSEAVRGL 83 (757)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~s~~a--w~~~~~lL~~~~~~~~vr~faa~~L~~ki~-----------~~w~~l~~e~~~~l 83 (757)
+|||+.|..|++.|.+.++.+-. -.+..+.|.+.+..++.|..|+.+|||-+. .+|..++.|.++.+
T Consensus 16 spD~n~rl~aE~ql~~l~~~dF~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qv 95 (858)
T COG5215 16 SPDPNARLRAEAQLLELQSGDFEQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQV 95 (858)
T ss_pred CCCCCccccHHHHHHHhccccHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHH
Confidence 67999999999999999976644 223345555556778999999999999774 35999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHh-hccccccCCccchHHHHHhcCCC-CC-chhHHHHHhhhchhhcccccc
Q 004389 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAV-HISAEDWGGGGIVNWLRDEMNSH-PE-FVPGFLELLTVLPEEVFNYKI 160 (757)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~-~~~~~~W~~~~~~~~l~~~~~~~-~~-~~~~~L~~L~~L~ee~~~~~~ 160 (757)
|...++.|.. ..+..-+--++.+|.|+. ..+...||+ ++..++...+.. |. ...-.|.++...+|-..
T Consensus 96 K~~al~aL~s---~epr~~~~Aaql~aaIA~~Elp~~~wp~--lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~---- 166 (858)
T COG5215 96 KGMALRALKS---PEPRFCTMAAQLLAAIARMELPNSLWPG--LMEEMVRNVGDEQPVSGKCESLGICGYHCESEA---- 166 (858)
T ss_pred HHHHHHHhcC---CccHHHHHHHHHHHHHHHhhCccccchH--HHHHHHHhccccCchHhHHHHHHHHHHHhhccC----
Confidence 9999999886 233445666777888876 456689999 999988777643 32 22345667777766432
Q ss_pred cCChHHHHHHHHHHHHhHHHHH-HHHHHhhhhh---HHHHHHHHHHHHHhhccC-CCCCcccccchhHHHHHhccCC--c
Q 004389 161 AARPERRRQFEKELTSQMEVAL-STLTACLHIN---ELKEQVLEAFASWLRLKH-RIPGSVLASHPLVLTALSSLHS--E 233 (757)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl-~~l~~~l~~~---~~~~~~l~~l~~wi~~~~-~~~~~~l~~~~ll~~~~~~L~~--~ 233 (757)
+ +.+.+..+.++ .++...+..+ .++..+|+|+..-+.+.. ++-.+ -..+.+++.+++.-+. .
T Consensus 167 ---P-------e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E-~erNy~mqvvceatq~~d~ 235 (858)
T COG5215 167 ---P-------EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE-EERNYFMQVVCEATQGNDE 235 (858)
T ss_pred ---H-------HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch-hhhchhheeeehhccCCcH
Confidence 2 12333444443 4444444332 488899999987444422 12111 1234455555555442 2
Q ss_pred chHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCch
Q 004389 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDE 313 (757)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 313 (757)
++.-+|.-||+.|+.... ++++.. +.
T Consensus 236 e~q~aafgCl~kim~LyY-----------~fm~~y--------------------------------------mE----- 261 (858)
T COG5215 236 ELQHAAFGCLNKIMMLYY-----------KFMQSY--------------------------------------ME----- 261 (858)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHH--------------------------------------HH-----
Confidence 444555555555554221 111110 00
Q ss_pred hHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhccc---CccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccC
Q 004389 314 SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRD---SYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQY 390 (757)
Q Consensus 314 ~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~ 390 (757)
..+..+..+..+.++++|...+++||+.++++-.+.. +|. .+.|..+ +.=.....++++..|+..+.++=.-
T Consensus 262 -~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~--pe~p~qn--~~fa~aav~dvlP~lL~LL~~q~ed 336 (858)
T COG5215 262 -NALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYL--PEVPAQN--HGFARAAVADVLPELLSLLEKQGED 336 (858)
T ss_pred -HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhc--ccCchhh--cchHHHHHHHHHHHHHHHHHhcCCC
Confidence 0122334456678899999999999998887543211 111 1111000 0001122334444444444432211
Q ss_pred CCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchh
Q 004389 391 PQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPA 470 (757)
Q Consensus 391 p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~ 470 (757)
| +.++|+..- |++.+|.--....| +.++..+...+.+.+. +.+|+.+
T Consensus 337 ~-~~DdWn~sm--------------------------aA~sCLqlfaq~~g-d~i~~pVl~FvEqni~-----~~~w~nr 383 (858)
T COG5215 337 Y-YGDDWNPSM--------------------------AASSCLQLFAQLKG-DKIMRPVLGFVEQNIR-----SESWANR 383 (858)
T ss_pred c-cccccchhh--------------------------hHHHHHHHHHHHhh-hHhHHHHHHHHHHhcc-----CchhhhH
Confidence 1 123454221 14445543334455 6666666666666542 5789999
Q ss_pred hHHHHHHHHhhcccCccc-cccHHHHHhhcCCCC--ChHHHHHHHHHHHHhhHHHHhh--CCCCchhHHHHHHHHHhccC
Q 004389 471 EAALFCIRAISTYVSVVE-AEVMPQVMALLPKLP--QQPQLLQTVCLTIGAYSKWFDA--ASSDPSILASVLSILTSGMS 545 (757)
Q Consensus 471 Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~--~~~~l~~t~~~~ig~~~~~l~~--~~~~~~~l~~~l~~l~~~l~ 545 (757)
|++..+++++-++-.+.. ...+++.++.|...- +.-.++.|+.|++|+.+++++. +|. .+++......+.|+.
T Consensus 384 eaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~--~Hl~~~vsa~liGl~ 461 (858)
T COG5215 384 EAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPC--GHLVLEVSASLIGLM 461 (858)
T ss_pred HHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCcc--ccccHHHHHHHhhhh
Confidence 999999999988755443 355666666654332 2457899999999999999976 566 478899988888886
Q ss_pred CChHHHHHHHHHHHHHHHHhhh-------hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 004389 546 TSEDTAAAAALAFRHICDDCRK-------KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (757)
Q Consensus 546 ~~~~v~~~Aa~al~~l~~~~~~-------~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~ 618 (757)
+...+...+++++.+++.+..+ .+.|+-+.|++.+.+..+.. .=....|..+++++|.+|...|+ ...+
T Consensus 462 D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~---~Ne~n~R~s~fsaLgtli~~~~d-~V~~ 537 (858)
T COG5215 462 DCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELA---LNESNLRVSLFSALGTLILICPD-AVSD 537 (858)
T ss_pred ccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhh---ccchhHHHHHHHHHHHHHhhcch-hHHH
Confidence 6544889999999999876543 45577777777776554321 01245688999999999998764 4446
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCcc---cccCcchh-hHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHH
Q 004389 619 ALEMLCLPVVTPLQEIINQGPEIL---QKKHPRDL-TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRT 694 (757)
Q Consensus 619 ~l~~l~~~~~~~l~~~~~~~~~~~---~~~~~~~~-~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v 694 (757)
.+..+..-...++.++++-..... +......+ ...++.+..++|.-+ ..+.++..+++.++.+++++- +..-+
T Consensus 538 ~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~--~~ie~v~D~lm~Lf~r~les~-~~t~~ 614 (858)
T COG5215 538 ILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR--RDIEDVEDQLMELFIRILEST-KPTTA 614 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHHhcc-CCchh
Confidence 666777777788888776433211 11111111 236778888888654 345677889999999999874 23345
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhc
Q 004389 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQH 731 (757)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~ 731 (757)
-+.+...++.+...+|+.|..|+|.+++++....+.+
T Consensus 615 ~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~ 651 (858)
T COG5215 615 FGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCT 651 (858)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcch
Confidence 5788999999999999999999999999998887543
No 11
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.7e-24 Score=246.45 Aligned_cols=602 Identities=14% Similarity=0.186 Sum_probs=389.9
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
-.++.+|+.+.+++ ++.+.|.+|++.|.++|..|++|..|..+|+. ++..+++|||.++|.+-|+++|+.+|.+++.+
T Consensus 9 ~~~lldavv~~~~~~~s~~~r~eA~~~l~~lke~~~~~~~~~~iL~~-s~~~~~k~f~Lqlle~vik~~W~~~~~~~r~g 87 (1041)
T KOG2020|consen 9 DSELLDAVVVTLNPEGSNEERGEAQQILEELKEEPDSWLQVYLILKL-STNPILKYFALQLLENVIKFRWNSLPVEERVG 87 (1041)
T ss_pred HHHHHHhHHHHhCcccchHHHHHHHHHHHHHHhCcchHHHHHHHHhc-cCCchhheeeHHHHHHHHHHhcccCCccccHH
Confidence 45677777777666 89999999999999999999999999999987 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC------CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcc
Q 004389 83 LQDSLNTLLKKFHK------GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 83 lr~~Ll~~l~~~~~------~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~ 156 (757)
+|++++..+...+. ..+.+++||+..+..++++++|+.||+ +++++.+....++..++..+.+++.|.||+.
T Consensus 88 lk~~v~~~~~~~~~~~~~~~~~~~~~~kL~~i~Vqi~K~eWp~~wp~--~i~dl~~~s~~s~~~~el~m~Il~lLsEdvf 165 (1041)
T KOG2020|consen 88 LKNYVLTLIIEASPDEDVSETEKHLLNKLNLILVQIVKREWPAIWPT--FIPDLAQSSKTSETVCELSMIILLLLSEEVF 165 (1041)
T ss_pred HHHHHHHHHhhcCCcHhHHHHHHHHHHHHhHHHHHHHHHHHHhhcch--hhhhHHHHhhcCcccchHHHHHHHHHHHHHh
Confidence 99999998876431 246899999999999999999999999 9999999888888889999999999999998
Q ss_pred cccccCChHHHHH-HHHHHHHhHHHHHHHHHHhhhhh--HHH---HHHHHHHHHHhhccCCCCCcccccchhHHHHHhcc
Q 004389 157 NYKIAARPERRRQ-FEKELTSQMEVALSTLTACLHIN--ELK---EQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL 230 (757)
Q Consensus 157 ~~~~~~~~~~r~~-l~~~l~~~~~~vl~~l~~~l~~~--~~~---~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L 230 (757)
.........+|.. ++..+...+..+.+++.....+. ++. ...+.+|.+||++++.++. ..+-..+...+
T Consensus 166 ~~ss~~~~q~~~~il~~~~~~~f~~i~~l~~~~~~~a~~~~~~atl~tl~~fl~wip~~~I~~t-----n~l~~~l~~~l 240 (1041)
T KOG2020|consen 166 DFSSSELTQQKIIILKNLLENEFQQIFTLCSYIKEKANSELLSATLETLLRFLEWIPLGYIFET-----NILELLLNKFL 240 (1041)
T ss_pred cccchHHHhhhHHHHHHHhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccHHHHHHh-----hhHHHHHHhcc
Confidence 8654333444444 34445556667777776655442 233 3456666778776542221 22344455667
Q ss_pred CCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHH------HHhhHHHhccc-CCCH-HHHHHHHHHHHHHhhH
Q 004389 231 HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ------IMSLKAHLTDS-SKDE-EDVKAIARLFADMGDS 302 (757)
Q Consensus 231 ~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~------v~~l~~~~~~~-~~d~-~~~~~~~~l~~~~~~~ 302 (757)
+.++.+..|++|+.+++++..... .....++++..+.. .....+....+ ..|. ...+.++..+..+++.
T Consensus 241 n~~~~r~~al~CL~ei~s~~~~~~---~~~~~~~~~~~~~~l~~i~~~l~~~~~~~~~~~~dq~~fi~~l~~~l~~f~~~ 317 (1041)
T KOG2020|consen 241 NAPELRNNALSCLTELLSRKRSIY---ERKTVPMFNLTIYQLRSIPQDLDIPEVYSSLSDEDQDSFIEKLAQFLSLFFEQ 317 (1041)
T ss_pred chHHHHHHHHHHHHHHHhccccch---hHHhHHHHHHHHHHHHHhhhhhchhhhhhcccHhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998764311 00112333322211 11111122222 2233 5678999999999999
Q ss_pred HHHHHHcCCch----hHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcc-cCccccCcc-cchHH--HHHHHHHhhH
Q 004389 303 YVELIATGSDE----SMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKR-DSYISFGNE-ASAEA--ERSRRLQVFR 374 (757)
Q Consensus 303 ~~~~i~~~~~~----~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~-~~~~~~~~~-~~~~~--~~~~~~~~~~ 374 (757)
+..++...... ...+..+++..+-+|++-.+. +++.|..+..+++.. +.+...... +...+ .-+-+.+.|.
T Consensus 318 ~~~lle~~~~~~~~~~~~~~~li~i~~~~~se~~~~-~ld~W~~lv~~l~~~~~~ll~~s~~~~~~~~~~ri~~rk~~y~ 396 (1041)
T KOG2020|consen 318 HIALLESSLSQRPVLLEALLELILISTIEPSEIFKI-CLDYWNKLVADLYYNKPPLLQLSTTLPSISDYSRIDFRKSIYQ 396 (1041)
T ss_pred HHHHHcCchhhhhHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHhhhcccccccccccccccccchhccchHHHHHH
Confidence 99988763221 223334444344455554444 999999998876653 222110000 00000 0011256788
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHH
Q 004389 375 SAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFV 454 (757)
Q Consensus 375 ~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~ 454 (757)
+++.++....+.+|.-|++.--.+.+..+..++++.+ .+.. + +-..+.+.+...+..-+ ...-......+.
T Consensus 397 ~~~~~~r~l~l~~m~~Pe~vlive~~~~~~vre~~~~--~~~~-~-----ly~~~~e~l~~~~~L~~-~~t~~~~~~kl~ 467 (1041)
T KOG2020|consen 397 EFLSKLRLLRLERMAKPEEVLIVENEQGEIVREFMKD--HDFI-T-----LYPVLRETLVYLLHLDV-VDTEKIMTEKLA 467 (1041)
T ss_pred HHHHHHHHHHHHHhcCchheeEEechHHHHHHHhccC--cchh-h-----hhHHHHHHHHHHHHhhh-hhhhhhhhHhHH
Confidence 8888888888999999986321222333344444432 0000 0 00113333333222222 212222223332
Q ss_pred HhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhh----cC--CCC-ChHHHHHHHHHHHHhhHHHHhhC
Q 004389 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMAL----LP--KLP-QQPQLLQTVCLTIGAYSKWFDAA 526 (757)
Q Consensus 455 ~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~----l~--~l~-~~~~l~~t~~~~ig~~~~~l~~~ 526 (757)
..+. +...+|+.+.--++++++++..+.+.. ...+..++.- .. .-+ ....+....+..+|+|..|+..|
T Consensus 468 ~~l~---~~~~~~~~ln~l~~ai~sisg~~~e~~e~k~~~~v~~d~l~l~E~~~~kdn~avi~~Ni~~vv~q~p~Fl~~h 544 (1041)
T KOG2020|consen 468 IQLD---GDEWSLHNLNRLCWAIGSISGRMLEDMEKKFFVAVIRDLLNLCERKRGKDNKAVIASNIMYVVGQYPRFLKAH 544 (1041)
T ss_pred HHhh---HHHHhhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhcccchHHHHH
Confidence 2221 114678899999999998888665442 2222222221 11 112 24567888999999999999988
Q ss_pred CCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHhhCcCCCCCChhhH
Q 004389 527 SSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL--------CGYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (757)
Q Consensus 527 ~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l--------~p~l~~ll~~~~~l~~~~~~~~l~~~~~ 597 (757)
. .+++++...+++.++... .++.+||..|.++...|..+. .|+.+.++.-+..++. .+....+
T Consensus 545 ~---~~Lkt~~~~L~efmhe~h~gvqdmacd~F~~ii~~~~~~fv~~~~~e~~~fv~~~~~~l~~i~~-----~l~~~q~ 616 (1041)
T KOG2020|consen 545 W---KFLKTVVHKLFEFMHETHEGVQDMACDTFIKIIQKCKRHFVITQLGETKPFVGELLLNLTAITE-----DLQPQQR 616 (1041)
T ss_pred H---HHHHHHHHHHHHHHhhhhHHHHhhhHHHHHHHHHhhhhhheeecccccccchHHHhhcccchhc-----CchHHHH
Confidence 5 488888899988886643 489999999999999997742 2566666665555544 2557788
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHhhhhHHHHHHHHHhc
Q 004389 598 LHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQ 637 (757)
Q Consensus 598 ~~l~eai~~vi~~-~~~e~~~~~l~~l~~~~~~~l~~~~~~ 637 (757)
...++++|.++.+ .+++....+.+....---..+.+++.+
T Consensus 617 ~~~~~al~~~V~~~~~~~~~~~~~~~~~vl~~~~~~nii~~ 657 (1041)
T KOG2020|consen 617 HTFYEALGLMVSAEIDPAKAERLQSKLMVLPNRAWINIILQ 657 (1041)
T ss_pred HHHHHHHHHHHHHhCCHhhHHHHHhcccccchhhhcchhhc
Confidence 9999999955554 555555555554444444444444433
No 12
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.7e-23 Score=215.56 Aligned_cols=644 Identities=13% Similarity=0.099 Sum_probs=396.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCC-----CChhhHH
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----LPSEAVR 81 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~-----l~~e~~~ 81 (757)
+.|...+-. .+|+..|+.|++.|.+++|.|+....|++++.+..-+..+|.-||.++||||.+.|+. ++++++.
T Consensus 5 llqcf~qTl-dada~~rt~AE~~Lk~leKqPgFv~all~i~s~de~~lnvklsAaIYfKNkI~rsWss~~d~~i~~Dek~ 83 (970)
T COG5656 5 LLQCFLQTL-DADAGKRTIAEAMLKDLEKQPGFVMALLHICSKDEGDLNVKLSAAIYFKNKIIRSWSSKRDDGIKADEKS 83 (970)
T ss_pred HHHHHHHHh-ccCcchhhHHHHHHHHhhcCCcHHHHHHHHHhhccCCchhhHHHHHHHhhhhhhhhhhcccCCCCCcccH
Confidence 344443332 4599999999999999999999999999999875577899999999999999999975 4456777
Q ss_pred HHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCCC-chhHHHHHhhhchhhcccc
Q 004389 82 GLQDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFNY 158 (757)
Q Consensus 82 ~lr~~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~-~~W~~~~~~~~l~~~~~~~~~-~~~~~L~~L~~L~ee~~~~ 158 (757)
+.|+.+++.+... -.+|...|+.+..++..+...++| +.|+ +.+.....+.++.. ++..+|.++..+.. ..
T Consensus 84 e~K~~lienil~v~l~sp~~tr~~l~ail~~I~seD~ps~~wg---l~p~~~nll~s~ea~~vy~gLlcl~elfk---ay 157 (970)
T COG5656 84 EAKKYLIENILDVFLYSPEVTRTALNAILVNIFSEDKPSDLWG---LFPKAANLLRSSEANHVYTGLLCLEELFK---AY 157 (970)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccCchhhcc---cchHHHHhhcccchhHHHHHHHHHHHHHH---HH
Confidence 7777777766653 347888888888888888777765 6776 67777777766543 45566666655533 23
Q ss_pred cccCChHHHHHHHHHHHHhHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCc
Q 004389 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHI-----NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (757)
Q Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~-----~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~ 233 (757)
|+... .+|..+..-+...+|.+.++-...... .++...++|.+.+.+.+ ++|.. |+.+
T Consensus 158 Rwk~n-deq~di~~li~alfpile~~g~nl~s~~ny~s~e~l~LILk~fKsvcy~--~LP~~--------------lsa~ 220 (970)
T COG5656 158 RWKYN-DEQVDILMLITALFPILEKVGGNLESQGNYGSVETLMLILKSFKSVCYY--SLPDF--------------LSAI 220 (970)
T ss_pred hhhcc-chHhhHHHHHHHhhHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHh--hCCHH--------------Hccc
Confidence 33332 234444444567777777665544442 25778899999988876 46642 4566
Q ss_pred chHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHH-HHcCCc
Q 004389 234 ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVEL-IATGSD 312 (757)
Q Consensus 234 ~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~-i~~~~~ 312 (757)
+.+..|......+++++.+.. .... .+.++..-+|+-. ..+.+-++.|+|..++...... -..-..
T Consensus 221 e~f~sw~ql~l~i~qkplp~e--vlsl-dpevRs~~~wvKc----------kKWa~ynLyR~fqRy~k~s~~~~y~~f~~ 287 (970)
T COG5656 221 ETFSSWFQLSLRILQKPLPNE--VLSL-DPEVRSLSKWVKC----------KKWAAYNLYRSFQRYIKKSYKKSYLSFYI 287 (970)
T ss_pred hhhHHHHHHHHHHHcCCCCHH--Hhcc-Chhhccccchhhh----------hHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777888888888988764321 0000 0001111111100 0133445556666555432111 000000
Q ss_pred hhHHHHHHHhc----ccc---cCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHH
Q 004389 313 ESMLIVHALLE----VAS---HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVS 385 (757)
Q Consensus 313 ~~~~~l~~ll~----~~~---~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 385 (757)
.+...++.+++ -+. ....-.+...+-|...+.+...+. .+.+...+|+++-++...+
T Consensus 288 ~f~t~vp~il~tffkqie~wgqgqLWlsd~~LYfi~~Fve~cv~~----------------d~tw~l~ePhlq~ii~~vI 351 (970)
T COG5656 288 TFMTRVPMILATFFKQIEEWGQGQLWLSDIELYFIDFFVELCVDA----------------DQTWRLMEPHLQYIISGVI 351 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeecchHHHHHHHHHHHHHhhh----------------HhhHhhhccHHHHHHHhhh
Confidence 01122222222 111 123345666666655555544321 2468889999766654333
Q ss_pred hhccCCCC--CCCCChhhhHHHHHhhhcccccCCcc-hhhhhhhhhhhhHHHhhhhhcChh---HHHHHHHHHHHHhHhh
Q 004389 386 FRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSST-LTESVMLIAVADVLIDAASVLGGD---ATLKILYIKFVEGVAC 459 (757)
Q Consensus 386 ~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~s~-~~~~~~~~~~~d~l~~~~~~l~~~---~~l~~l~~~l~~~~~~ 459 (757)
.-+-.+++ .+.|+.|. ++|-+...|+-.++.++ + |+.+++.-+....+.. .++.++.+.+.+...+
T Consensus 352 fPllc~see~eElfEnDp-~eyirry~df~d~g~spdl-------aal~fl~~~~sKrke~TfqgiLsf~~sil~qsaa~ 423 (970)
T COG5656 352 FPLLCLSEEEEELFENDP-DEYIRRYYDFFDNGLSPDL-------AALFFLIISKSKRKEETFQGILSFLLSILGQSAAT 423 (970)
T ss_pred hhhcCCChhhHHHHhcCH-HHHHHHhcchhcCCCChhH-------HHHHHHHHHhcccchhhhhhHHHHHHHHHhcccCC
Confidence 22222222 33344333 34432222222222222 1 1455555555555532 3555555666544322
Q ss_pred CCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHh-----h-cCCCCC-hHHHHHHHHHHHHhhHHHHhhCCCCchh
Q 004389 460 CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMA-----L-LPKLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSI 532 (757)
Q Consensus 460 ~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~-----~-l~~l~~-~~~l~~t~~~~ig~~~~~l~~~~~~~~~ 532 (757)
+.+ -.+-+..|+|++.++++..-+... +.+..+++ + +|.+.+ ...++.++|+++++|+.-++.+. .
T Consensus 424 psn-~dnarq~egalr~lasi~s~itk~--sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~----i 496 (970)
T COG5656 424 PSN-IDNARQAEGALRLLASIKSFITKM--SPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNG----I 496 (970)
T ss_pred CCc-cccHHHHhhHHHHHHHHHHHhccC--chHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccch----H
Confidence 222 357889999999999998844432 22333333 2 345543 67999999999999988777653 5
Q ss_pred HHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh--hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHh
Q 004389 533 LASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR--KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (757)
Q Consensus 533 l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~--~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (757)
+..++....+++.++. +|+..||.|+.-|..+-. ..+..|++..|+.+..+-+. ...+.-..+||++ ++
T Consensus 497 ll~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~-----feiD~LS~vMe~f---Ve 568 (970)
T COG5656 497 LLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNT-----FEIDPLSMVMESF---VE 568 (970)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhccc-----ccchHHHHHHHHH---HH
Confidence 6677777767776543 599999999999987653 35668999999999887543 4566677788877 45
Q ss_pred cCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccc----cCcch--hhHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHH
Q 004389 610 ELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK----KHPRD--LTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFK 682 (757)
Q Consensus 610 ~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~--~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~ 682 (757)
..+ |++.++...+++.+.++.-++.+....++++ ...++ ....++++.+++-+++. |.......+.+.|++.
T Consensus 569 ~fs-eELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~ 647 (970)
T COG5656 569 YFS-EELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVIS 647 (970)
T ss_pred HhH-HhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 554 5666777777777777655555443322211 11222 34567888888877764 4555667888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 004389 683 AIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 730 (757)
Q Consensus 683 ~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 730 (757)
.++.+ .-.++...+|.++.. ...+-+.+.|..+.+.+.+.+....
T Consensus 648 Filkn--~i~dfy~Ea~dildg-~tf~skeI~pimwgi~Ell~~~l~~ 692 (970)
T COG5656 648 FILKN--EISDFYQEALDILDG-YTFMSKEIEPIMWGIFELLLNLLID 692 (970)
T ss_pred HHHhh--hHHHHHHHHHHHHhh-hhHHHHHhhhhhhHHHHHHHhcccc
Confidence 99976 335677777887765 4445567779999999998876654
No 13
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=99.80 E-value=5.8e-15 Score=160.62 Aligned_cols=503 Identities=17% Similarity=0.205 Sum_probs=270.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCC---------
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE--------- 74 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~--------- 74 (757)
++.+...|.+. -++|++.|.+|+..|++...+++.-.....+..+...+.+.|++|+..|++.|.++|..
T Consensus 3 ~~~ii~~L~~~-ls~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~E~fr~~~ 81 (1005)
T KOG2274|consen 3 KQAIIELLSGS-LSADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNFEAFRYPL 81 (1005)
T ss_pred HHHHHHHHHhh-cCCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChHhhccCCC
Confidence 34555566666 36799999999999999999998655556666655567899999999999999999963
Q ss_pred -CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhhhch
Q 004389 75 -LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLP 152 (757)
Q Consensus 75 -l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~ 152 (757)
.+++.+..+|+.|++.+.. ..+.+++-.+-+++.++-.++|+.||+ +++.+...++++ .++....+++|..+.
T Consensus 82 ~~~e~~K~~IRe~Ll~~l~~---sn~ki~~~vay~is~Ia~~D~Pd~WpE--lv~~i~~~l~~~n~n~i~~am~vL~el~ 156 (1005)
T KOG2274|consen 82 IVSEEVKALIREQLLNLLDD---SNSKIRSAVAYAISSIAAVDYPDEWPE--LVPFILKLLSSGNENSIHGAMRVLAELS 156 (1005)
T ss_pred cccHHHHHHHHHHHHhhhhc---cccccchHHHHHHHHHHhccCchhhHH--HHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 3456788999999998874 567889999999999999999999999 999999988853 346678888888887
Q ss_pred hhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCC
Q 004389 153 EEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (757)
Q Consensus 153 ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~ 232 (757)
.|+........ .......+-.++.+...+-....+....+ +++..++..+.
T Consensus 157 ~ev~~ee~~~~-------~~~~l~~m~~~f~~~~~~s~~~~~~aa~~---------------------~lf~sc~~li~- 207 (1005)
T KOG2274|consen 157 DEVDVEEMFFV-------GPVSLAEMYRIFALTIVYSIITRLGAARG---------------------KLFTSCLTLIT- 207 (1005)
T ss_pred HHHHHHHHhcc-------cccchhhhhhhhhhccccchhHHHHhhhh---------------------HHHHHHHHHHh-
Confidence 77642100000 00000111111111000000000000000 11111111000
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCCCCch-hHHHHHHHHHHhhHHH-hcccC-CCHHHHHHHHHHHHHHhhHHHHHHHc
Q 004389 233 EILSEASVNVISELIHYSAAGSSGGATVNM-PLIQVIVPQIMSLKAH-LTDSS-KDEEDVKAIARLFADMGDSYVELIAT 309 (757)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~-~~~~~l~~~v~~l~~~-~~~~~-~d~~~~~~~~~l~~~~~~~~~~~i~~ 309 (757)
...... ..+. .++..+++..+....+ +...+ .|.-....+.+.++.++++++.++..
T Consensus 208 -------------~~~e~~-------~~~~~~~~s~~l~~~~~~l~h~l~~~~g~~~~~~~eilk~~t~l~~nfp~~~~~ 267 (1005)
T KOG2274|consen 208 -------------NVEEVW-------AEHVKVFLSQILNQFMDILEHPLQRNDGSDFSLRMEILKCLTQLVENFPSLINP 267 (1005)
T ss_pred -------------HHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 000000 0011 1222222222222111 11111 11223345556666666665554421
Q ss_pred -----CCchhH---HHHHHHh-ccccc------------Cc----cchhhhhHHHHHHHHHHHhcccCccccCcccchHH
Q 004389 310 -----GSDESM---LIVHALL-EVASH------------PE----YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEA 364 (757)
Q Consensus 310 -----~~~~~~---~~l~~ll-~~~~~------------~~----~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~ 364 (757)
.+.... ..+..-+ .-..+ |. ++..-..++|-+.+.......+
T Consensus 268 ~~~~~~~~vw~~~~~~~~~yir~~V~~~e~~~~~~~dsd~e~~~~~~l~i~i~eF~s~i~t~~~~~~------------- 334 (1005)
T KOG2274|consen 268 FMMGMFSIVWQTLEKILAVYVRESVNGTEDSYDARYDSDPEEKSVETLVIQIVEFLSTIVTNRFLSK------------- 334 (1005)
T ss_pred HHHhhhhHHHHHHHHHHhhhhhhhccccccCcccccCCchhhhChHHhhhhHHHHHHHHHHHHHHHH-------------
Confidence 011000 1111100 00000 10 1234466777666665432110
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhccCCCC-CCCCChhhhHHH-------HHhhhcccccCCcchhhhhhhhhhhhHHHhh
Q 004389 365 ERSRRLQVFRSAYESLVSLVSFRVQYPQD-YQDLSLEDLKEF-------KHTRYDLACCSSSTLTESVMLIAVADVLIDA 436 (757)
Q Consensus 365 ~~~~~~~~~~~~~~~ll~~l~~k~~~p~d-~~~~~~d~~~~f-------~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~ 436 (757)
.. +..+..++..++.-++.+++ .+.|..|. ..| ..-|.. +.|.+..+
T Consensus 335 ---ti----~~~l~~lI~~~v~y~Qlseeqie~w~sD~-~~fV~dEd~~~~~~~~-----------------~rd~~~~v 389 (1005)
T KOG2274|consen 335 ---TI----KKNLPELIYQLVAYLQLSEEQIEVWTSDV-NQFVADEDDGYTARIS-----------------VRDLLLEV 389 (1005)
T ss_pred ---Hh----hhhhHHHHHHHHHHHHhhHHHHHHHhccH-HHhhccCCCCchhhhh-----------------HHHHHHHH
Confidence 00 00111122222222222321 11222111 111 112333 55666666
Q ss_pred hhhcChhHHHHHHHHH----HHHhHhh-CCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC--CChHHH
Q 004389 437 ASVLGGDATLKILYIK----FVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL--PQQPQL 508 (757)
Q Consensus 437 ~~~l~~~~~l~~l~~~----l~~~~~~-~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l--~~~~~l 508 (757)
..-.|.. -+..+.+. +++.-++ .-+....|...|+++++..++..+.. ..+.+..+...+. .+ ..-|.+
T Consensus 390 ~~~f~~~-~i~~i~~a~~~~~~es~at~~~~~~~~wk~qea~l~a~~~~~~~~~--~dd~l~~l~~~~~~~l~~~e~P~L 466 (1005)
T KOG2274|consen 390 ITTFGNE-GINPIQDAAGRHFQESQATYLFNNESWWKIQEALLVAAESVRIDDA--NDDKLIELTIMIDNGLVYQESPFL 466 (1005)
T ss_pred HHhccch-hhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHHHHHhhcccccCHHH
Confidence 6666633 22323333 3322111 11225679999999999887773211 2233333333321 22 234777
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC--CChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhC
Q 004389 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS--TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~--~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~ 586 (757)
..+++++++.|++-+..+|+ ++...++..+++++ .++.++.+|+.+|...| -.+.+.|..|.+++.+.++...
T Consensus 467 l~Ra~~~i~~fs~~~~~~~~---~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~--~~~vl~~~~p~ild~L~qlas~ 541 (1005)
T KOG2274|consen 467 LLRAFLTISKFSSSTVINPQ---LLQHFLNATVNALTMDVPPPVKISAVRAFCGYC--KVKVLLSLQPMILDGLLQLASK 541 (1005)
T ss_pred HHHHHHHHHHHHhhhccchh---HHHHHHHHHHHhhccCCCCchhHHHHHHHHhcc--CceeccccchHHHHHHHHHccc
Confidence 77999999999887766775 77777777776664 33346777766665555 2345679999999999988753
Q ss_pred cCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 587 EGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 587 ~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
.+.+.-..+||+++.++.-=|
T Consensus 542 -----~s~evl~llmE~Ls~vv~~dp 562 (1005)
T KOG2274|consen 542 -----SSDEVLVLLMEALSSVVKLDP 562 (1005)
T ss_pred -----ccHHHHHHHHHHHHHHhccCh
Confidence 467888999999999887633
No 14
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.6e-15 Score=157.77 Aligned_cols=587 Identities=10% Similarity=0.106 Sum_probs=304.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCC-----CCChhhHH
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE-----ELPSEAVR 81 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~-----~l~~e~~~ 81 (757)
|.+.++.. .++|+..++-||+.|++.++.|+.......+..+.+.+..+|..|+..+||-|.+.|. ++|+|++.
T Consensus 2 vvq~Lq~A-ts~d~~v~k~AE~qLr~WEtqPGF~~~L~sI~l~~t~dv~vRWmAviyfKNgIdryWR~~~~~sl~~EEK~ 80 (978)
T KOG1993|consen 2 VVQVLQQA-TSQDHIVVKPAEAQLRQWETQPGFFSKLYSIFLSKTNDVSVRWMAVIYFKNGIDRYWRRNTKMSLPPEEKD 80 (978)
T ss_pred HHHHHHHh-cCCCcccchhHHHHHHhhccCCcHHHHHHHHHhccccceeeeeehhhhHhcchhHHhhcCCcccCCHHHHH
Confidence 45667777 6789999999999999999999999988888877567789999999999999999994 79999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC---CC--chhHHHHHhhhchhhcc
Q 004389 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH---PE--FVPGFLELLTVLPEEVF 156 (757)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~---~~--~~~~~L~~L~~L~ee~~ 156 (757)
.||..++.++.. ....+..|.|.++|.+|.-++|.+||+ ++++|.+.+++. .+ .....|.+|..+-.+..
T Consensus 81 ~iR~~Ll~~~~E---~~nQlaiQ~AvlisrIARlDyPreWP~--Lf~~L~~~Lq~~~~~gD~~~~~RiLi~l~~ilK~La 155 (978)
T KOG1993|consen 81 FIRCNLLLHSDE---ENNQLAIQNAVLISRIARLDYPREWPD--LFPDLLGQLQSSLGTGDSLVQHRILITLHHILKALA 155 (978)
T ss_pred HHHHHHHHhccc---chhHHHHHHHHHHHHHHhcCCCccchh--HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999888764 566788999999999999999999999 999999887653 12 12233334444333333
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcchH
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILS 236 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~~ 236 (757)
++| -.+-++.+.+-.|.|++++.-.+-++ +...--|.. +.. .+..+++ . -+.+
T Consensus 156 t~R-------L~a~rk~F~el~~~I~~~l~~~l~s~------lt~~~lq~~-----ss~--~ea~~Ls----a---lQ~s 208 (978)
T KOG1993|consen 156 TKR-------LLADRKAFYELAPEILTILAPILWSS------LTMMFLQSV-----SSI--KEATLLS----A---LQRS 208 (978)
T ss_pred HhH-------HhhhhHHHHHHhHHHHHHHHHHHhcc------hHHHHHHHh-----hcc--hhHHHHH----H---HHHH
Confidence 322 23344566777777777655433221 000000000 000 0000000 0 0111
Q ss_pred HHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHH-----hcccCC--CHHHHHHHHHHHHHHhhHHHHHHHc
Q 004389 237 EASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH-----LTDSSK--DEEDVKAIARLFADMGDSYVELIAT 309 (757)
Q Consensus 237 ~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~-----~~~~~~--d~~~~~~~~~l~~~~~~~~~~~i~~ 309 (757)
-.++.++..++-.+-. .| .+ -++++.+ +..+.+... ...+.. -.|... +....++..+..++.+
T Consensus 209 ~~~lk~lRrlvv~G~~-~P---~k-se~~eRl-~~F~e~~~~~~~~~~s~~~~~vk~di~e---k~~i~l~K~l~~l~~r 279 (978)
T KOG1993|consen 209 YLTLKVLRRLVVFGFQ-NP---SK-SEFFERL-LQFLELHQRKLLSSLSTGTQSVKSDILE---KFCIKLMKVLAFLFNR 279 (978)
T ss_pred HHHHHHHHHHHHhccC-Cc---ch-hhHHHHH-HHHHHHHHHHHHhhcccccchhhhHHHH---HHHHHHHHHHHHHhcC
Confidence 2223333333321110 00 00 0111111 111111111 001100 001111 2222333333334433
Q ss_pred CCch------hHHHHHHHhcccccCccch--hhhhHHHHHHHHH-H------Hhccc--Ccc----ccCc-ccchHHHHH
Q 004389 310 GSDE------SMLIVHALLEVASHPEYDI--ASMTFNFWHSLQV-I------LTKRD--SYI----SFGN-EASAEAERS 367 (757)
Q Consensus 310 ~~~~------~~~~l~~ll~~~~~~~~~v--~~~~l~fW~~l~~-~------~~~~~--~~~----~~~~-~~~~~~~~~ 367 (757)
+|-. ....+++.+....++.+.+ .+....+|..+.. + +.... ++. .+.+ ++...+..+
T Consensus 280 hpfsF~~~~~~~~~l~f~~~yIf~~~~~l~~~~~~~~~fe~f~iq~l~mlK~vm~~~~~~~s~~~k~~~d~~~~~~~~a~ 359 (978)
T KOG1993|consen 280 HPFSFSFYSPCPVKLEFSIDYIFDEYDFLGQISGHLSSFEEFFIQCLNMLKKVMIMKNYKFSLTIKEFCDTKDEHLETAQ 359 (978)
T ss_pred CCcccccccccceeeehhhhhhhcccchhcccccccccHHHHHHHHHHHHHHHHHhhcccccccchhcccCccccHHHHH
Confidence 3311 2223444444433332110 1222333333221 1 11000 110 0110 000000001
Q ss_pred HHHHhh--HHHHHHHHHHHHhhccC--CCCCCCCChhhhHHH------HHhhhcccccCCcchhhhhhhhhhhhHHHhhh
Q 004389 368 RRLQVF--RSAYESLVSLVSFRVQY--PQDYQDLSLEDLKEF------KHTRYDLACCSSSTLTESVMLIAVADVLIDAA 437 (757)
Q Consensus 368 ~~~~~~--~~~~~~ll~~l~~k~~~--p~d~~~~~~d~~~~f------~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~ 437 (757)
+....| .+.+..+++.++.|--. |+|.++|.+|. +.| .++-..+|+|.. .++.+++
T Consensus 360 ~i~~sFl~~~rIt~lcd~Lvt~YflLt~~eLEeW~~dP-E~~~~Eq~~~dwey~lRPCaE-------------~L~~~lF 425 (978)
T KOG1993|consen 360 KIYNSFLTDNRITNLCDLLVTHYFLLTEEELEEWTQDP-EGWVLEQSGGDWEYNLRPCAE-------------KLYKDLF 425 (978)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHhcCHHHHHHHhcCh-HHhhhhcccccceeccchhHH-------------HHHHHHH
Confidence 111111 12456667776665422 56667775443 222 123334444332 2445555
Q ss_pred hhcChhHHHHHHHHHHHHhHhh-CCCCCC---CcchhhHHHHHHHHhhcccCccccccHHHHHhh--cCCC----CChHH
Q 004389 438 SVLGGDATLKILYIKFVEGVAC-CGNKHN---EWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL--LPKL----PQQPQ 507 (757)
Q Consensus 438 ~~l~~~~~l~~l~~~l~~~~~~-~~~~~~---~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~--l~~l----~~~~~ 507 (757)
..-+ +-+.+.+...+.+.... ++++.. ..-.++|+.-+++-.+..+...-+ ..+.++. ++.+ +....
T Consensus 426 ~~ys-qllvP~~l~~i~~a~~~~~pt~~~~l~a~L~KDAiYaa~g~~a~~l~~~~d--F~~Wl~~~llpEl~~~~~~~Ri 502 (978)
T KOG1993|consen 426 DAYS-QLLVPPVLDMIYSAQELQSPTVTEDLTALLLKDAIYAAFGLAAYELSNILD--FDKWLQEALLPELANDHGNSRI 502 (978)
T ss_pred HHHH-HhhhHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHhhCHHhhhcccchhH
Confidence 4444 44444455555433211 111111 122456666565544444332211 1222221 2322 22467
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHh---hhhhcCCHHHHHHHHHH
Q 004389 508 LLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDC---RKKLCGYLDGLYNVYRT 582 (757)
Q Consensus 508 l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~---~~~l~p~l~~ll~~~~~ 582 (757)
+|+...+++|.....= .+. +.-+.+...+++.+++.+ .|+-.++.+++...++- .+...||++.+...++.
T Consensus 503 iRRRVa~ilg~Wvsvq--~~~--e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk 578 (978)
T KOG1993|consen 503 IRRRVAWILGQWVSVQ--QKL--ELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK 578 (978)
T ss_pred HHHHHHHHHhhhhhee--chH--hHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence 9999999999755411 121 355666667777776653 48899999999998874 56788999999999999
Q ss_pred HhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhh
Q 004389 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (757)
Q Consensus 583 l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (757)
++... -..+++..++..++.+|..++ +.+.++. ..+-+.+..-=.... +.+-.++..+..+-.+++
T Consensus 579 ll~~~----~e~Dtk~~VL~~ls~lI~r~~-e~I~P~~--------~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~ 644 (978)
T KOG1993|consen 579 LLKAV----EECDTKTSVLNLLSTLIERVS-EHIAPYA--------STIVQYLPLLWEESE-EEPLLRCALLATLRNLVN 644 (978)
T ss_pred HHHHH----hhhhhHHHHHHHHHHHHHHHH-HhhhHHH--------HHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHH
Confidence 98753 136789999999999888853 2232333 333333322111111 122234456677777778
Q ss_pred hcCC-Ccch
Q 004389 663 YVNH-PEAV 670 (757)
Q Consensus 663 ~~~~-~~~~ 670 (757)
+++. ++++
T Consensus 645 alg~qS~~~ 653 (978)
T KOG1993|consen 645 ALGAQSFEF 653 (978)
T ss_pred HhccCCccc
Confidence 7764 4444
No 15
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=2.1e-12 Score=135.96 Aligned_cols=338 Identities=17% Similarity=0.194 Sum_probs=230.8
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhH
Q 004389 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAV 80 (757)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~ 80 (757)
|++..+++.....+|.+.|+..|.+||+-|.+|..+|++.+-|..||.. +..+..+..|+..|-+.+.++ ..+|-+++
T Consensus 1 m~sLaqLe~lCk~LY~s~D~~~R~~AE~~L~e~s~speclskCqlll~~-gs~pYs~mlAst~L~Klvs~~-t~lpl~qr 78 (1082)
T KOG1410|consen 1 MQSLAQLESLCKDLYESTDPTARHRAEKALAELSESPECLSKCQLLLER-GSYPYSQMLASTCLMKLVSRK-TPLPLEQR 78 (1082)
T ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHccCHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHcCC-CCCcHHHH
Confidence 7889999999999999999999999999999999999999999999987 456688999999998777765 47999999
Q ss_pred HHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccccCCc--------cchHHHHHhcCCC-CCchhHHHHHhhh
Q 004389 81 RGLQDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISAEDWGGG--------GIVNWLRDEMNSH-PEFVPGFLELLTV 150 (757)
Q Consensus 81 ~~lr~~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~~~W~~~--------~~~~~l~~~~~~~-~~~~~~~L~~L~~ 150 (757)
..||+++++++..- .+-+++|...|++.+|.+-+. .|-+. +++.++...++.+ .+++.+.+.+|..
T Consensus 79 ldir~Yilnylat~~Pk~~~fvi~sLiQl~arlTK~----gW~d~~k~~y~FRd~v~~~~kfl~~~~ve~~~igv~iLsq 154 (1082)
T KOG1410|consen 79 LDIRNYILNYLATGAPKLAPFVIQSLIQLFARLTKL----GWFDQQKDEYVFRDPVDDVTKFLQMDNVEHCIIGVQILSQ 154 (1082)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHhc----cccccccccchhhhhHHHHHHHhccCchHHHHHHHHHHHH
Confidence 99999999999872 123578999999999999875 35432 4566666666654 4677889999999
Q ss_pred chhhcccccccC--ChHHHHH--HHHH-HHHhHHHHHHHHHHhh----hhh-------HHHHHHHHHHHH-HhhccC---
Q 004389 151 LPEEVFNYKIAA--RPERRRQ--FEKE-LTSQMEVALSTLTACL----HIN-------ELKEQVLEAFAS-WLRLKH--- 210 (757)
Q Consensus 151 L~ee~~~~~~~~--~~~~r~~--l~~~-l~~~~~~vl~~l~~~l----~~~-------~~~~~~l~~l~~-wi~~~~--- 210 (757)
|..|....+... +++||.. +++. +.+.+.--++.+.... ++. .+.+.+++|+.- +|.-+.
T Consensus 155 LvqemN~~~~~~p~tkHRkias~FRD~sL~~vf~laln~L~~~~~~nlnd~~q~~L~~~vL~L~l~Cl~FDfiGss~DEs 234 (1082)
T KOG1410|consen 155 LVQEMNQADGMDPSTKHRKIASSFRDDSLFDVFSLALNLLKDNVDLNLNDRAQLGLLMQVLKLNLNCLNFDFIGSSTDES 234 (1082)
T ss_pred HHHHhhCCCCCCcchHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccCcccHhHhhHHHHHHHHHhhhccccccccccccc
Confidence 999998665433 3444432 4433 3333333334443332 111 356677888752 333211
Q ss_pred -------CCCCc---ccccchhHHHHHhccCC--cchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHH
Q 004389 211 -------RIPGS---VLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH 278 (757)
Q Consensus 211 -------~~~~~---~l~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~ 278 (757)
.+|.+ .+.....+++.|+..++ |++++.|++|++.+.+..++..+ ..++.++++.++.++.+..+.
T Consensus 235 sed~ctVQIPTsWRs~f~d~stlqlfFdly~slp~~~S~~alsclvqlASvRRsLFN--~aeRa~yl~~Lv~Gvk~il~n 312 (1082)
T KOG1410|consen 235 SEDLCTVQIPTSWRSSFLDSSTLQLFFDLYHSLPPELSELALSCLVQLASVRRSLFN--GAERAKYLQHLVEGVKRILEN 312 (1082)
T ss_pred cccccceecCcHHHHHhcCchHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhC
Confidence 12211 12255677888888774 68899999999999976665431 125677888888776554332
Q ss_pred hcccCCCHHHHHHHHHHHHHHhhHHH-HHHH--cCCchhHHHH-HHHhcccccCc--cchhhhhHHHHHHHHHHH
Q 004389 279 LTDSSKDEEDVKAIARLFADMGDSYV-ELIA--TGSDESMLIV-HALLEVASHPE--YDIASMTFNFWHSLQVIL 347 (757)
Q Consensus 279 ~~~~~~d~~~~~~~~~l~~~~~~~~~-~~i~--~~~~~~~~~l-~~ll~~~~~~~--~~v~~~~l~fW~~l~~~~ 347 (757)
..+-.|.+.++.+||++..+-.+|- .-++ +..++..+++ ++-+.-..|=+ ..-....+.+|.++...+
T Consensus 313 -p~~LsD~~nyHeFCRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSV 386 (1082)
T KOG1410|consen 313 -PQGLSDPANYHEFCRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASV 386 (1082)
T ss_pred -CcCCCCcchHHHHHHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcC
Confidence 2344577888899999998876652 2222 2233333333 33332222222 223457889999988754
No 16
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=99.73 E-value=1.4e-17 Score=154.70 Aligned_cols=141 Identities=26% Similarity=0.434 Sum_probs=126.6
Q ss_pred ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhccc-ccccCChHHHHHHHHHHHH
Q 004389 98 PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFN-YKIAARPERRRQFEKELTS 176 (757)
Q Consensus 98 ~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~~-~~~~~~~~~r~~l~~~l~~ 176 (757)
|++|++|+|.+++.++.+++|+.||+ +++++++.+++++.+...+|.+|+.++||+.+ .+.....+||.++++.|.+
T Consensus 1 p~~i~~kl~~~l~~i~~~~~P~~Wp~--~l~~l~~~~~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~ 78 (148)
T PF08389_consen 1 PPFIRNKLAQVLAEIAKRDWPQQWPD--FLEDLLQLLQSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDALRS 78 (148)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHChhhCch--HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999988777788999999999999986 3555668899999999999
Q ss_pred hHHHHHHHHHHhhhh------hHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcchHHHHHHHH
Q 004389 177 QMEVALSTLTACLHI------NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEASVNVI 243 (757)
Q Consensus 177 ~~~~vl~~l~~~l~~------~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~~~~a~~~l 243 (757)
+.+.|++++.++++. +++...+++|+.+|+.+ ++.+.+.++++++.+|+.|++++++++|++||
T Consensus 79 ~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~---~~~~~i~~~~~l~~~~~~l~~~~~~~~A~~cl 148 (148)
T PF08389_consen 79 NSPDILEILSQILSQSSSEANEELVKAALKCLKSWISW---IPIELIINSNLLNLIFQLLQSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTT---S-HHHHHSSSHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHh---CCHHHhccHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 999999999998876 46788999999999996 67677778889999999999999999999997
No 17
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=99.61 E-value=2.9e-11 Score=132.84 Aligned_cols=173 Identities=16% Similarity=0.131 Sum_probs=124.5
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCC-----C
Q 004389 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEE-----L 75 (757)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~-----l 75 (757)
|+....|+++-.+ .++||..++.||+-|++.++.++.-.....+..+.+.+..+|..|+..+||-|.++|.+ +
T Consensus 1 M~~~~vv~~~~~a--qs~~p~s~k~AE~~Lrqwe~q~gF~~kL~~I~~~~~~~m~lR~~a~i~fkn~I~~~W~~~~~~~i 78 (947)
T COG5657 1 MEDLPVVKQLDLA--QSPDPPSVKCAEERLRQWEKQHGFALKLLSINLSAFNSMSLRWAALIQFKNYIDKHWREENGNSI 78 (947)
T ss_pred CCchHHHHHHHhh--cCCCCchHhhHHHHHHhhhccccHHHHHHHHHhccccchhHHHHHHHHHHhhHHHHhhhhcccCC
Confidence 6666666665544 36788889999999999999999665666666554567899999999999999999963 6
Q ss_pred ChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhh
Q 004389 76 PSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE 154 (757)
Q Consensus 76 ~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee 154 (757)
.+++...+|..++.++.+ .+....-|.+.+++.+|.-++|++||+ +++++...+++.. ......|..+..+-.+
T Consensus 79 ~p~e~v~IR~~l~~lii~---s~n~l~iq~a~avs~IA~~DfPdeWpT--L~~DL~~~Ls~~D~~tn~~~L~~~h~Ifk~ 153 (947)
T COG5657 79 LPDENVLIRDELFSLIIS---SSNQLQIQNALAVSRIARLDFPDEWPT--LVPDLLSLLSEKDMVTNENSLRVLHHIFKR 153 (947)
T ss_pred CCccchHHHHHHHHHHHc---ccchHHHHHHHHHHHHHhccCcccchh--HHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 666777999999999988 455555589999999999999999999 9999999887632 1223445554444332
Q ss_pred cccccccCChHHHHHHHHHHHHhHHHHHHHHHHhh
Q 004389 155 VFNYKIAARPERRRQFEKELTSQMEVALSTLTACL 189 (757)
Q Consensus 155 ~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l 189 (757)
.. +. .+-+..+.+..|.+..++...+
T Consensus 154 ~r--~l-------~Rsd~lf~ei~p~L~~~l~pfl 179 (947)
T COG5657 154 LR--RL-------FRSDALFLEIAPVLLSILCPFL 179 (947)
T ss_pred Hh--hh-------hccHHHHHHHHHHHHHHHHHHH
Confidence 21 11 1112334555666665555543
No 18
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.7e-07 Score=104.03 Aligned_cols=256 Identities=16% Similarity=0.096 Sum_probs=172.6
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccc----cc-HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEA----EV-MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLS 538 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~----~~-l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~ 538 (757)
++..+-+-||+.+++.++..+.++-. +. ++.++..+-+ +.+++|..-+.-.+-.|++...+. ....||+.+++
T Consensus 400 DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~-~l~pYLd~lm~ 477 (1075)
T KOG2171|consen 400 DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKS-ILEPYLDGLME 477 (1075)
T ss_pred CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHH
Confidence 45667778999999999999887632 22 2334433322 348889988888888877765442 11248888888
Q ss_pred HHHhccCC--ChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 004389 539 ILTSGMST--SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (757)
Q Consensus 539 ~l~~~l~~--~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~ 616 (757)
-.+..+.. +..|+..|..|+..++..+...+.||.+.+|..+.+.+.+.+... ..+-|-..||+++.+-.+++.++.
T Consensus 478 ~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d-~r~LrgktmEcisli~~AVGke~F 556 (1075)
T KOG2171|consen 478 KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKD-LRELRGKTMECLSLIARAVGKEKF 556 (1075)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchh-hHHHHhhHHHHHHHHHHHhhhhhh
Confidence 54444433 235999999999999999999999999999999999998753211 245678889999999999988888
Q ss_pred HHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCC------
Q 004389 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW------ 690 (757)
Q Consensus 617 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~------ 690 (757)
.+..+.+++-....-.+.. .. ....+-+.+...+.+.+.++ +.+.+++..++|.+....+.-+.
T Consensus 557 ~~~a~eliqll~~~~~~~~-----~~---dd~~~sy~~~~warmc~ilg--~~F~p~L~~Vmppl~~ta~~~p~~~~~d~ 626 (1075)
T KOG2171|consen 557 LPLAEELIQLLLELQGSDQ-----DD---DDPLRSYMIAFWARMCRILG--DDFAPFLPVVMPPLLKTARLDPDVALSDE 626 (1075)
T ss_pred hHhHHHHHHHHHhhcccch-----hh---ccccHHHHHHHHHHHHHHhc--hhhHhHHHHHhHHHHHhhccCCcccCcCc
Confidence 7777766655443221111 11 11223344455555555554 46888888889888766543211
Q ss_pred ------------------CH-------HH---HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 004389 691 ------------------DM-------RT---MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (757)
Q Consensus 691 ------------------~~-------~v---~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~ 732 (757)
+. .+ .+.+|..+.......+..|.||+.++++.++-...-+.
T Consensus 627 ~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~f 696 (1075)
T KOG2171|consen 627 EDEEEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYF 696 (1075)
T ss_pred hhhhhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhh
Confidence 11 11 34577788888888899999999999995444433333
No 19
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=99.24 E-value=8.3e-10 Score=116.22 Aligned_cols=207 Identities=18% Similarity=0.254 Sum_probs=121.2
Q ss_pred HHHHHhcccccCc-cchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhh--HHHHHHHHH-HHHhhccCCC
Q 004389 317 IVHALLEVASHPE-YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVF--RSAYESLVS-LVSFRVQYPQ 392 (757)
Q Consensus 317 ~l~~ll~~~~~~~-~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~-~l~~k~~~p~ 392 (757)
+.+++......+. +.+...++.|...+.+... ....| +|++.+++. +++..|.+-+
T Consensus 142 vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~--------------------~~~lf~~~~~L~~Iie~VI~Pnl~~~e 201 (370)
T PF08506_consen 142 VWNLLTKISQQPKYDILVSKALQFLSSVAESPH--------------------HKNLFENKPHLQQIIEKVIFPNLCLRE 201 (370)
T ss_dssp HHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHH--------------------HHTTT-SHHHHHHHHHHTHHHHHS--H
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHcchh--------------------HHHHhCCHHHHHHHHHHhccCccCCCH
Confidence 3455555555543 4567789998665443211 11122 455555554 2233343322
Q ss_pred -CCCCCChhhhHHHHHhhhcccc-cCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhh-CCCCCCCcch
Q 004389 393 -DYQDLSLEDLKEFKHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVAC-CGNKHNEWRP 469 (757)
Q Consensus 393 -d~~~~~~d~~~~f~~~R~~~~~-~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~-~~~~~~~w~~ 469 (757)
|.+.|++|. .|| .|+++.+ |.. +||+|+.|+++.++...+ ..+.+.+...+++.+.+ ..+++.+|+.
T Consensus 202 ~D~ElfEddP-~EY--Irrd~e~sd~~------TrR~AA~dfl~~L~~~~~-~~v~~i~~~~i~~~l~~y~~~~~~~w~~ 271 (370)
T PF08506_consen 202 EDEELFEDDP-EEY--IRRDLEGSDSD------TRRRAACDFLRSLCKKFE-KQVTSILMQYIQQLLQQYASNPSNNWRS 271 (370)
T ss_dssp HHHHHHHHSH-HHH--HHHHSCSS---------SHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-TTT-HHH
T ss_pred HHHHHHccCH-HHH--HHhhccccccC------CcHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHhhCCcccHHH
Confidence 223333222 233 6677665 433 489999999999988776 44444444444443321 0123578999
Q ss_pred hhHHHHHHHHhhcccCccc------cc--cHHHHHhh--cC----CCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHH
Q 004389 470 AEAALFCIRAISTYVSVVE------AE--VMPQVMAL--LP----KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILAS 535 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~------~~--~l~~l~~~--l~----~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~ 535 (757)
+|+|++++++++....... ++ .+..++.. +| ....||.++..+|+++..|...+.. +.+..
T Consensus 272 KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~-----~~l~~ 346 (370)
T PF08506_consen 272 KDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPK-----EQLLQ 346 (370)
T ss_dssp HHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-H-----HHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCH-----HHHHH
Confidence 9999999999997764321 11 24444443 22 2335999999999999999987754 37899
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHH
Q 004389 536 VLSILTSGMSTSE-DTAAAAALAF 558 (757)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~Aa~al 558 (757)
+++.+.++++++. .|..+||.|+
T Consensus 347 ~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 347 IFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchhhhhhhhC
Confidence 9999999998876 5889999875
No 20
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope. Karyopherins, which may act as importins or exportins, are part of the Importin-beta super-family, which all share a similar three-dimensional structure. Members of the importin-beta (karyopherin-beta) family can bind and transport cargo by themselves, or can form heterodimers with importin-alpha. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Importin-beta is a helicoidal molecule constructed from 19 HEAT repeats. Many nuclear pore proteins contain FG sequence repeats that can bind to HEAT repeats within importins [, ], which is important for importin-beta mediated transport. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. As a result, the N-terminal auto-inhibitory region on importin-alpha is free to loop back and bind to the major NLS-binding site, causing the cargo to be released []. There are additional release factors as well. This entry represents the N-terminal domain of karyopherins that is important for the binding of the Ran protein []. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport; PDB: 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 1IBR_D 1QGR_A 3LWW_A 1F59_A 2Q5D_A ....
Probab=99.10 E-value=2.2e-10 Score=92.81 Aligned_cols=67 Identities=22% Similarity=0.373 Sum_probs=63.3
Q ss_pred HHHHHHHHhcC-hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCC--------CCChhhHHHHHHHHHHHHH
Q 004389 26 ADRWLQDFQHT-IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE--------ELPSEAVRGLQDSLNTLLK 92 (757)
Q Consensus 26 A~~~L~~~q~s-~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~--------~l~~e~~~~lr~~Ll~~l~ 92 (757)
|+++|++++++ |++|..+..++.+++.+.++|++|+++|||+|+++|. .+|++++..||+.|++.+.
T Consensus 1 AE~~L~~~~~~~p~~~~~l~~il~~~~~~~~~R~~A~i~LKn~I~~~W~~~~~~~~~~~~~~~k~~Ik~~ll~~l~ 76 (77)
T PF03810_consen 1 AEQQLKQFQKQNPGFWQYLLQILSSNSQDPEVRQLAAILLKNLIKKNWSPSKQKGWSQLPEEEKEQIKSQLLQLLL 76 (77)
T ss_dssp HHHHHHHHHHSCTCHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHSGGHHHHHHHHGSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcCchhhccCCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999999 9999999999976667889999999999999999999 9999999999999999875
No 21
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=0.00019 Score=78.71 Aligned_cols=437 Identities=12% Similarity=0.122 Sum_probs=231.3
Q ss_pred HhHHHHHHHHHHhhhhhHH--HHHHHHHHHHHhhccCCCCCccc--ccchhHHHHHhccCCcch--HHHHHHHHHHHhhh
Q 004389 176 SQMEVALSTLTACLHINEL--KEQVLEAFASWLRLKHRIPGSVL--ASHPLVLTALSSLHSEIL--SEASVNVISELIHY 249 (757)
Q Consensus 176 ~~~~~vl~~l~~~l~~~~~--~~~~l~~l~~wi~~~~~~~~~~l--~~~~ll~~~~~~L~~~~~--~~~a~~~l~~ii~~ 249 (757)
..+|.|+.|+.+-+++|+. +..+.=+|.|-... + ..+.+ .....++.+...+.++.+ ++++.=+|..+...
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g-p--~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~ 436 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEG-P--EPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADF 436 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcC-C--chhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhh
Confidence 4568999999998888753 34455555554442 1 11111 122344555566666654 35555566666653
Q ss_pred hccCCCCCCCCchhHHHHHHHHHHhhHHHhcccC-CCHHHHHHHHHHHHHHhhHHHHHHHcC----C--chhHHHHHHHh
Q 004389 250 SAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSS-KDEEDVKAIARLFADMGDSYVELIATG----S--DESMLIVHALL 322 (757)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~-~d~~~~~~~~~l~~~~~~~~~~~i~~~----~--~~~~~~l~~ll 322 (757)
.... ..+....+.+++-+ .++- +.+-...+.|.-|..+++........+ + +.+..++.-++
T Consensus 437 l~e~-----~~n~~~l~~~l~~l-------~~gL~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll 504 (859)
T KOG1241|consen 437 LPEA-----IINQELLQSKLSAL-------LEGLNDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLL 504 (859)
T ss_pred chhh-----cccHhhhhHHHHHH-------HHHhhhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHH
Confidence 3211 01222222222211 1111 123456689999999998877766544 2 23567788888
Q ss_pred cccccCc---cchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCCh
Q 004389 323 EVASHPE---YDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSL 399 (757)
Q Consensus 323 ~~~~~~~---~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~ 399 (757)
+.+.-++ ...+..+++-...+.+..++ .+-|...++...++.|+.---.-.-.+.
T Consensus 505 ~~tdr~dgnqsNLR~AAYeALmElIk~st~----------------------~vy~~v~~~~l~il~kl~q~i~~~~l~~ 562 (859)
T KOG1241|consen 505 KVTDRADGNQSNLRSAAYEALMELIKNSTD----------------------DVYPMVQKLTLVILEKLDQTISSQILSL 562 (859)
T ss_pred hhccccccchhhHHHHHHHHHHHHHHcCcH----------------------HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 8777643 34666666654444433221 1223344444444433321000001222
Q ss_pred hhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHH
Q 004389 400 EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRA 479 (757)
Q Consensus 400 d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ 479 (757)
+|.+.|.+.-.. ++.+|..+.+.+|++
T Consensus 563 ~dr~q~~eLQs~-----------------Lc~~Lq~i~rk~~~~------------------------------------ 589 (859)
T KOG1241|consen 563 ADRAQLNELQSL-----------------LCNTLQSIIRKVGSD------------------------------------ 589 (859)
T ss_pred hhHHHHHHHHHH-----------------HHHHHHHHHHHcccc------------------------------------
Confidence 333333222222 223333333333221
Q ss_pred hhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHH
Q 004389 480 ISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALA 557 (757)
Q Consensus 480 ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~a 557 (757)
+.+..+..+.-+++.+.+ +....+...++..||....-+... +.+|++.+.+|+..+|.+-. .|...|.-.
T Consensus 590 ----~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~--F~kym~~f~pyL~~gL~n~~e~qVc~~aVgl 662 (859)
T KOG1241|consen 590 ----IREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKG--FAKYMPAFKPYLLMGLSNFQEYQVCAAAVGL 662 (859)
T ss_pred ----chhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 111111112222222222 223334444555555554444322 22589999999999995543 366666666
Q ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhc
Q 004389 558 FRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQ 637 (757)
Q Consensus 558 l~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~ 637 (757)
...+|+.....+.||-+.+|+.+.+.++++ .+..+.+-.++...|-|..++. ....+|+.. ++.-+++.-+.
T Consensus 663 Vgdl~raL~~~i~py~d~~mt~Lvq~Lss~---~~hR~vKP~IlS~FgDIAlaIg-~~F~~Yl~~----vm~llq~as~~ 734 (859)
T KOG1241|consen 663 VGDLARALEDDILPYCDELMTVLVQCLSSP---NLHRNVKPAILSVFGDIALAIG-ADFEPYLEM----VMPLLQQASSV 734 (859)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHccCc---cccccccchHHHHHHHHHHHHH-HhHHHHHHH----HHHHHHHHHhc
Confidence 788999999999999999999999888765 3444555667777777766643 234455543 33333333321
Q ss_pred CCCccc-c--cC-cchhhHHHHHHHHHhhhcCC---CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 004389 638 GPEILQ-K--KH-PRDLTVHIDRFAYIFRYVNH---PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK 710 (757)
Q Consensus 638 ~~~~~~-~--~~-~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~ 710 (757)
.....+ + +. .+.+..+++....++.+++. +.-+.+++..++.++..+-..-..++.+...+..+++.++..+|
T Consensus 735 ~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg 814 (859)
T KOG1241|consen 735 QTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFG 814 (859)
T ss_pred cCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcc
Confidence 111100 0 01 11233466777777777763 22334555566666666554444456677788899999999999
Q ss_pred hhhhhhH
Q 004389 711 RFMGITI 717 (757)
Q Consensus 711 ~~~~p~l 717 (757)
++..+++
T Consensus 815 ~~~~~~~ 821 (859)
T KOG1241|consen 815 KGVIKLF 821 (859)
T ss_pred cchhhhh
Confidence 9888877
No 22
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.87 E-value=0.00012 Score=81.90 Aligned_cols=571 Identities=13% Similarity=0.133 Sum_probs=290.5
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHH
Q 004389 51 TSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWL 130 (757)
Q Consensus 51 ~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l 130 (757)
+.+-..||.|..=|-+.++++--.|+.|.-.-+-..+++++.. .+.-|++--..+++-++.+....+-.. +++.|
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D---~ngEVQnlAVKClg~lvsKvke~~le~--~ve~L 90 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLED---KNGEVQNLAVKCLGPLVSKVKEDQLET--IVENL 90 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhc---cCcHHHHHHHHHHHHHHhhchHHHHHH--HHHHH
Confidence 3455689999999999999997778777666666667777765 455677766778888887655433333 44544
Q ss_pred HHhcCCCCCc-hh----HHHHHhhhchhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHH
Q 004389 131 RDEMNSHPEF-VP----GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEA 201 (757)
Q Consensus 131 ~~~~~~~~~~-~~----~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~ 201 (757)
...+-++-++ .. .+..+...+|--..+ . .++ .-++.+.+.+.+..... .++..+++.
T Consensus 91 ~~~~~s~keq~rdissi~Lktvi~nl~P~~~~-~--la~-----------tV~~~~t~~l~~~i~~qe~~sai~~e~lDi 156 (1233)
T KOG1824|consen 91 CSNMLSGKEQLRDISSIGLKTVIANLPPSSSS-F--LAA-----------TVCKRITPKLKQAISKQEDVSAIKCEVLDI 156 (1233)
T ss_pred hhhhccchhhhccHHHHHHHHHHhcCCCcccc-c--ccc-----------HHHHHHHHHHHHHhhhcccchhhHHHHHHH
Confidence 4432222111 11 222333333321111 1 111 11122233333333221 144445555
Q ss_pred HHHHhh-ccCCCCCcccccchhHHHHHhccCCc--chHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHH
Q 004389 202 FASWLR-LKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAH 278 (757)
Q Consensus 202 l~~wi~-~~~~~~~~~l~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~ 278 (757)
+..... +|.-+|. ....++..+...|+.+ .++..|+-++..+....... -...+++.+..+
T Consensus 157 l~d~lsr~g~ll~~---fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~------ly~~li~~Ll~~------- 220 (1233)
T KOG1824|consen 157 LADVLSRFGTLLPN---FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD------LYVELIEHLLKG------- 220 (1233)
T ss_pred HHHHHHhhcccCcc---hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHhc-------
Confidence 554332 2211221 1123444445556655 35678888888887654310 122233332222
Q ss_pred hcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhccc---ccCccchhhhhHHHHHHHHHHHhcccCccc
Q 004389 279 LTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA---SHPEYDIASMTFNFWHSLQVILTKRDSYIS 355 (757)
Q Consensus 279 ~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~---~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~ 355 (757)
+... ......+.+...+.+++-..-.-+.+ +...++.++..++ ...+++..+.+++-...|.....
T Consensus 221 L~~~-~q~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp------- 289 (1233)
T KOG1824|consen 221 LSNR-TQMSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCP------- 289 (1233)
T ss_pred cCCC-CchHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhCh-------
Confidence 1111 11233444445555544332222222 2334455556655 45577888888887666654322
Q ss_pred cCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCC-hhhhHHHH------HhhhcccccCCcchhhhhhhhh
Q 004389 356 FGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLS-LEDLKEFK------HTRYDLACCSSSTLTESVMLIA 428 (757)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~-~d~~~~f~------~~R~~~~~~~~s~~~~~~~~~~ 428 (757)
....|+...+++.++.++.|++.+..-+ +|+.++|. ++-..++-|-+. .|-+|||
T Consensus 290 ---------------~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~---SWkVRRa 351 (1233)
T KOG1824|consen 290 ---------------KEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDM---SWKVRRA 351 (1233)
T ss_pred ---------------hhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccch---hHHHHHH
Confidence 1234666778888999999977533111 11111111 111111111111 3567888
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhC---CCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcCCCCC
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACC---GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ 504 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~---~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~~ 504 (757)
++.++..+..-. .+++..+++.+.-.+..- ...+..-.-+++.+-++..+..-.+.- +++.+.+ .+.|+
T Consensus 352 AaKcl~a~IsSR--~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~-----~g~~s 424 (1233)
T KOG1824|consen 352 AAKCLEAVISSR--LEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQ-----GGTPS 424 (1233)
T ss_pred HHHHHHHHHhcc--HHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhc-----cCCcc
Confidence 888887654322 235554554443221100 000011112223333333222211110 0011111 11111
Q ss_pred -hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Q 004389 505 -QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (757)
Q Consensus 505 -~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~ 582 (757)
-..++.+. +.++..+-+.+++.. +.+..+-.-+..+....+..+.++++.++..+..
T Consensus 425 ~~~~L~~~~---------------------~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~ 483 (1233)
T KOG1824|consen 425 DLSMLSDQV---------------------PLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIY 483 (1233)
T ss_pred chHHHHhhh---------------------HHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhh
Confidence 11222222 333333333343322 3556666777888887888888888888877666
Q ss_pred HhhCcCCCCCChhhHHHHHHHHHHHHh---cCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHH
Q 004389 583 AVNGEGSLKVSAEDSLHLVEALSMVIT---ELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (757)
Q Consensus 583 l~~~~~~~~l~~~~~~~l~eai~~vi~---~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (757)
.++.. +..+ ..-+++++.+.+ .-|++.+.+++..+..|++....+- ..+-...++-....
T Consensus 484 ~l~Dk--Ssss----~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~-----------fyKisaEAL~v~~~ 546 (1233)
T KOG1824|consen 484 SLNDK--SSSS----NLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDP-----------FYKISAEALLVCQQ 546 (1233)
T ss_pred hcCCc--cchH----HHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCc-----------hHhhhHHHHHHHHH
Confidence 66532 1111 233444444333 3467788888888777776544221 22222334444444
Q ss_pred HhhhcCC---C--cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 004389 660 IFRYVNH---P--EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ 730 (757)
Q Consensus 660 ~~~~~~~---~--~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 730 (757)
+++.+.+ | -.+.+.+..+.....+-++.-..|.+|+|++..|++..+..+|+.....+|.+++.+.+-.+.
T Consensus 547 lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n 622 (1233)
T KOG1824|consen 547 LVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN 622 (1233)
T ss_pred HHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc
Confidence 4444432 1 123456666666666666666678999999999999999999999999999988888776654
No 23
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.62 E-value=0.0022 Score=72.09 Aligned_cols=239 Identities=9% Similarity=0.067 Sum_probs=142.8
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhh-CC----CCchhHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDA-AS----SDPSILASVL 537 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~-~~----~~~~~l~~~l 537 (757)
.+--.+++..|..+++...-++.-..+++.+..-+. .. .+.+.+.+-++.+.++|.+.+.. +| +...+..+++
T Consensus 491 ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~ 570 (1233)
T KOG1824|consen 491 SSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY 570 (1233)
T ss_pred hHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH
Confidence 344578999999888887766554455544444322 11 23678999999999999998854 22 1113566666
Q ss_pred HHHHhccCCC---hHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChH
Q 004389 538 SILTSGMSTS---EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (757)
Q Consensus 538 ~~l~~~l~~~---~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e 614 (757)
....+.+... .+|+.+|..++..+....++.+...++..+..+.+=+++ .-+|...++|...|..+.-.-
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-------EiTRl~AvkAlt~Ia~S~l~i 643 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-------EITRLTAVKALTLIAMSPLDI 643 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-------hhHHHHHHHHHHHHHhcccee
Confidence 6655555322 149999999999999888888888888887777665543 457889999999887773222
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC---CcchHHHHHHHHHHHHHHHHhcCCC
Q 004389 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH---PEAVADAIQRLWPIFKAIFDIRAWD 691 (757)
Q Consensus 615 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~ 691 (757)
...+-+..++..+...+.+..... ....+..+-+++..... ++-...++.++-|.+.. +|
T Consensus 644 ~l~~~l~~il~~l~~flrK~~r~l-----------r~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lise------sd 706 (1233)
T KOG1824|consen 644 DLSPVLTEILPELASFLRKNQRAL-----------RLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISE------SD 706 (1233)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhH------HH
Confidence 333445555555555554443211 11233333334333322 12222334444443321 34
Q ss_pred HHHHHHHHHHHHHHHHH----hhhhhhhhHHHHHHHHHHH
Q 004389 692 MRTMESLCRACKYAVRT----SKRFMGITIGAILEEIQGL 727 (757)
Q Consensus 692 ~~v~e~~~~~~~~~~~~----~~~~~~p~l~~~~~~l~~~ 727 (757)
-.+.+-+..++..++.. +-....|+++.++.++-+.
T Consensus 707 lhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 707 LHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 56677777777766653 3445667777776666443
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.9e-05 Score=83.37 Aligned_cols=226 Identities=16% Similarity=0.151 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 004389 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (757)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~ 585 (757)
-+|+.+...++-++..+.+. +++.+++.+-..+.+.+ .++.++..|+..+++.|-+-+.||++.++-.+..++.
T Consensus 370 NLRkCSAAaLDVLanvf~~e-----lL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~ 444 (885)
T KOG2023|consen 370 NLRKCSAAALDVLANVFGDE-----LLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLD 444 (885)
T ss_pred cHhhccHHHHHHHHHhhHHH-----HHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhc
Confidence 37888888888888888754 89999999988888765 7999999999999999999999999999999988886
Q ss_pred CcCC-------CCCC--------h------------------hhHHHHHHHHHHHHhcCCh---HHHHHHHHHhhhhHHH
Q 004389 586 GEGS-------LKVS--------A------------------EDSLHLVEALSMVITELPQ---VDAKKALEMLCLPVVT 629 (757)
Q Consensus 586 ~~~~-------~~l~--------~------------------~~~~~l~eai~~vi~~~~~---e~~~~~l~~l~~~~~~ 629 (757)
.... ++++ . +...++-||.++....+.. ++..+++..++ +
T Consensus 445 DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL----~ 520 (885)
T KOG2023|consen 445 DKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYIL----D 520 (885)
T ss_pred cCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHH----H
Confidence 3110 0110 0 1223344555544444321 23334444444 4
Q ss_pred HHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 004389 630 PLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA-WDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 630 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~v~e~~~~~~~~~~~~ 708 (757)
.+..+.+.+. .+.+....+.|+++..+++..=.=..+++-++|.+.+--+..+ .|.++. -...|+..+..+
T Consensus 521 ~l~~af~kYQ-------~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd~DKdLf-PLLEClSsia~A 592 (885)
T KOG2023|consen 521 QLVFAFGKYQ-------KKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSDSDKDLF-PLLECLSSIASA 592 (885)
T ss_pred HHHHHHHHHh-------hcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCcccchHH-HHHHHHHHHHHH
Confidence 4444444332 1223455678888877775311112568888998755444433 345553 357889999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHh-------hcC------------CcchHhhHHHHHHHhCC
Q 004389 709 SKRFMGITIGAILEEIQGLYQ-------QHQ------------QPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 709 ~~~~~~p~l~~~~~~l~~~~~-------~~~------------~~~~l~~~~~~i~~f~~ 749 (757)
+|..|.||.+++.+....-.+ ... .-+-|++++-+++..|.
T Consensus 593 L~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~ 652 (885)
T KOG2023|consen 593 LGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGS 652 (885)
T ss_pred HhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhh
Confidence 999999999887766544333 111 23457888887777764
No 25
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.34 E-value=0.0075 Score=64.38 Aligned_cols=172 Identities=9% Similarity=0.006 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHH
Q 004389 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~ 628 (757)
++++.-+.-+..+.+..++.+-+.-+.+|+.+..++++.+ +.-....++.+|+++..++. +....|++.+. |++
T Consensus 571 elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~----~t~~~~dV~~aIsal~~sl~-e~Fe~y~~~fi-Pyl 644 (858)
T COG5215 571 ELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTK----PTTAFGDVYTAISALSTSLE-ERFEQYASKFI-PYL 644 (858)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccC----CchhhhHHHHHHHHHHHHHH-HHHHHHHhhhh-HHH
Confidence 3666666677777777788888999999999999998631 23345678888988888763 55566666644 443
Q ss_pred HHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 004389 629 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 629 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 708 (757)
.+-.++.. .......++.+|.+.++++ ..+..+...++..|.+.+++-..+-++..++..+|+.+...
T Consensus 645 ~~aln~~d----------~~v~~~avglvgdlantl~--~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAla 712 (858)
T COG5215 645 TRALNCTD----------RFVLNSAVGLVGDLANTLG--TDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALA 712 (858)
T ss_pred HHHhcchh----------HHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHH
Confidence 32212111 1123346777888888886 46778888999999999988777788999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcCCcchHh
Q 004389 709 SKRFMGITIGAILEEIQGLYQQHQQPCFLY 738 (757)
Q Consensus 709 ~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~ 738 (757)
.|.+|.|||..++-.+.+.-+..|++.=+|
T Consensus 713 iga~F~~YL~~im~L~qqas~~~p~~~~~~ 742 (858)
T COG5215 713 IGANFESYLDMIMMLFQQASELDPHSDEVY 742 (858)
T ss_pred HhhhHHHHHHHHHHHHHHHhccCCCCCcee
Confidence 999999999999988888777778766443
No 26
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3.8e-05 Score=82.77 Aligned_cols=263 Identities=15% Similarity=0.195 Sum_probs=170.1
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCC-C-CChH
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQP 506 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~ 506 (757)
+.+.+.+|....+...++..+...+.+ ..||.+.+++..++++++..+..-+..++.+++.+.+ + ..||
T Consensus 239 a~kai~~~~~~~aVK~llpsll~~l~~---------~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 239 AAKAIMRCLSAYAVKLLLPSLLGSLLE---------AKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHHHhcCcchhhHhhhhhHHHHHH---------HhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCH
Confidence 344555555555555566655554442 3799999999999999999876666667777777653 3 3599
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--------------------------------------
Q 004389 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-------------------------------------- 548 (757)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-------------------------------------- 548 (757)
.||.++..++-+|+..+.+ |+ +.+.++.++.++.+|.
T Consensus 310 evr~a~~~~l~~~~svidN-~d----I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR 384 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDN-PD----IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER 384 (569)
T ss_pred HHHHHHHHHHHHHHHhhcc-HH----HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc
Confidence 9999999999999998874 43 4444444444444431
Q ss_pred --HHHHHHHHHHHHHHHHh--hhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004389 549 --DTAAAAALAFRHICDDC--RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 624 (757)
Q Consensus 549 --~v~~~Aa~al~~l~~~~--~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~ 624 (757)
.....++..+.+.|..- +..+.||++.|+..+...+.. ..++.|.-...++|..+..+..... .. .
T Consensus 385 st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d-----~~PEvR~vaarAL~~l~e~~g~~~f----~d-~ 454 (569)
T KOG1242|consen 385 STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDD-----AVPEVRAVAARALGALLERLGEVSF----DD-L 454 (569)
T ss_pred cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcC-----CChhHHHHHHHHHHHHHHHHHhhcc----cc-c
Confidence 24456777777787765 567889999999999988764 2478999999999988887653322 11 1
Q ss_pred hhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004389 625 LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (757)
Q Consensus 625 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~ 704 (757)
.|. +......... ........+.++.+.+..+. +.....+|-+..-......++.+++....++..
T Consensus 455 ~p~---l~e~~~~~k~------~~~~~g~aq~l~evl~~~~v-----~~~~~~~~~~~a~~~~~~~~~~~~dg~~~~~~~ 520 (569)
T KOG1242|consen 455 IPE---LSETLTSEKS------LVDRSGAAQDLSEVLAGLGV-----EKVEDILPEILANASSVLIDERIRDGVIWLFYL 520 (569)
T ss_pred ccH---HHHhhccchh------hhhhHHHhhhHHHHHhcccc-----hHHHHHHHHHHHHHhhccchhhhccCeeehhhc
Confidence 122 2222221111 11223345556666655542 233455555555454544566777777666666
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHh
Q 004389 705 AVRTSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 705 ~~~~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
.=...|..+.||+-.+++.+.+...
T Consensus 521 lp~~~~~~~~~yi~~i~~~~~k~~a 545 (569)
T KOG1242|consen 521 LPYIFGFQFQPYIHEILDEFLKGLA 545 (569)
T ss_pred cchhhhHHhHHHHHHHHHHHHHHhh
Confidence 5567788888888888777766543
No 27
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0095 Score=70.67 Aligned_cols=259 Identities=14% Similarity=0.114 Sum_probs=140.7
Q ss_pred HHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhcCCC-C-ChHHHHHHHHHHHHhhHHHHh
Q 004389 448 ILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKL-P-QQPQLLQTVCLTIGAYSKWFD 524 (757)
Q Consensus 448 ~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l-~-~~~~l~~t~~~~ig~~~~~l~ 524 (757)
++.+.+.+.+.+.. +..||-+||++.++.-+-.+-+.++ .+.+|.+...+.+. + .+.-||.++=.+....+.-..
T Consensus 1036 y~neIl~eLL~~lt--~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v 1113 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLT--SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCV 1113 (1702)
T ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33345555443332 4789999999999998877744332 35567766655432 2 255566655444333333222
Q ss_pred h-----CCC-CchhHHHHHHHHHh-cc-CCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhh
Q 004389 525 A-----ASS-DPSILASVLSILTS-GM-STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAED 596 (757)
Q Consensus 525 ~-----~~~-~~~~l~~~l~~l~~-~l-~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~ 596 (757)
+ |+. ..+.+..+|++++. |+ ++.+.|+..+-..+..+++..++.+.||++.++-.+.+.++. +.+..
T Consensus 1114 r~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~-----lE~~v 1188 (1702)
T KOG0915|consen 1114 RICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSE-----LEPQV 1188 (1702)
T ss_pred hhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccc-----cchHH
Confidence 2 222 12688889998873 43 333459999999999999999999999999999998887752 22111
Q ss_pred HHH-HHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhh-cC--C------
Q 004389 597 SLH-LVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY-VN--H------ 666 (757)
Q Consensus 597 ~~~-l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~--~------ 666 (757)
--+ ...+++.-..++ |.++.... --.|+++.++.|++.... ..+...+.++..++|+ ++ +
T Consensus 1189 LnYls~r~~~~e~eal--Dt~R~s~a-ksspmmeTi~~ci~~iD~-------~vLeelip~l~el~R~sVgl~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1189 LNYLSLRLINIETEAL--DTLRASAA-KSSPMMETINKCINYIDI-------SVLEELIPRLTELVRGSVGLGTKVGCAS 1258 (1702)
T ss_pred HHHHHHhhhhhHHHHH--HHHHHhhh-cCCcHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHhccCCCCcchhHHH
Confidence 111 111111111112 11111111 245777777777763221 1122233333433333 11 0
Q ss_pred ---------CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHHHH
Q 004389 667 ---------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR-FMGITIGAILEEIQ 725 (757)
Q Consensus 667 ---------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~-~~~p~l~~~~~~l~ 725 (757)
+....|+..+++.++...++. .++.+..+.-.+.+++++...+ .+.-++..++.-+.
T Consensus 1259 fI~~L~~r~~~emtP~sgKll~al~~g~~d--RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l 1325 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKD--RNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLL 1325 (1702)
T ss_pred HHHHHHHHhccccCcchhHHHHHHhhcccc--ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh
Confidence 111223334444444444443 4566666666677777776555 56666655544433
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.55 E-value=0.27 Score=55.95 Aligned_cols=454 Identities=14% Similarity=0.146 Sum_probs=233.9
Q ss_pred CCCCHHHHHHHHHHHHHHhc-ChhHHHHHHHHhh-c-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 004389 16 HHPDDAVRMQADRWLQDFQH-TIDAWQVADNLLH-D-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (757)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~aw~~~~~lL~-~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~ 92 (757)
.+.|...|+-+.-++..+.. .|+...++..-+. + .+.++.+|-.|..++-+-. +++-...+-..+.+.+.
T Consensus 52 ~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-------~~~~~~~l~~~v~~ll~ 124 (526)
T PF01602_consen 52 SSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-------TPEMAEPLIPDVIKLLS 124 (526)
T ss_dssp SSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH--------SHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-------ccchhhHHHHHHHHHhc
Confidence 36788999999999888775 5554444433333 2 2456778888888888743 45555566666666655
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhhhchhhcccccccCChHHHHHHH
Q 004389 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFE 171 (757)
Q Consensus 93 ~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~ee~~~~~~~~~~~~r~~l~ 171 (757)
. ..+.||++-+.++..++...+. .-+.. +++.+.+.+... +......+.++..+ ... +. .
T Consensus 125 ~---~~~~VRk~A~~~l~~i~~~~p~-~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~-------~~--~--- 185 (526)
T PF01602_consen 125 D---PSPYVRKKAALALLKIYRKDPD-LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI--KCN-------DD--S--- 185 (526)
T ss_dssp S---SSHHHHHHHHHHHHHHHHHCHC-CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH--HCT-------HH--H---
T ss_pred C---CchHHHHHHHHHHHHHhccCHH-HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH--ccC-------cc--h---
Confidence 4 5679999999999888865432 22221 355555555422 22233445555554 000 00 0
Q ss_pred HHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhccCCCCCccccc--chhHHHHHhccCC--cchHHHHHHHHHH
Q 004389 172 KELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLAS--HPLVLTALSSLHS--EILSEASVNVISE 245 (757)
Q Consensus 172 ~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~l~~wi~~~~~~~~~~l~~--~~ll~~~~~~L~~--~~~~~~a~~~l~~ 245 (757)
.....+.+...+.+.+.. +-+...+++++..+.... .-.. ..+++.+...+.+ +.+.-.|+.++..
T Consensus 186 --~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~------~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~ 257 (526)
T PF01602_consen 186 --YKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME------PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIK 257 (526)
T ss_dssp --HTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC------hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 001223333333333222 224556666666544321 1111 2455555555442 2333334444332
Q ss_pred HhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhccc
Q 004389 246 LIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVA 325 (757)
Q Consensus 246 ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~ 325 (757)
+.. ....+..+++.+..+. . +.|.+..-...+.+..++......+. + ....+.+.
T Consensus 258 l~~------------~~~~~~~~~~~L~~lL----~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~-------~~~~~~~l 312 (526)
T PF01602_consen 258 LSP------------SPELLQKAINPLIKLL----S-SSDPNVRYIALDSLSQLAQSNPPAVF-N-------QSLILFFL 312 (526)
T ss_dssp HSS------------SHHHHHHHHHHHHHHH----T-SSSHHHHHHHHHHHHHHCCHCHHHHG-T-------HHHHHHHH
T ss_pred hhc------------chHHHHhhHHHHHHHh----h-cccchhehhHHHHHHHhhcccchhhh-h-------hhhhhhee
Confidence 221 1223344444333321 1 33443333344555555555433332 1 11112222
Q ss_pred -ccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHH
Q 004389 326 -SHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKE 404 (757)
Q Consensus 326 -~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~ 404 (757)
..++..+...+++-.+.+.+.- ..+.+ ++.+...+. + .+ |
T Consensus 313 ~~~~d~~Ir~~~l~lL~~l~~~~------------------------n~~~I----l~eL~~~l~---~---~~-d---- 353 (526)
T PF01602_consen 313 LYDDDPSIRKKALDLLYKLANES------------------------NVKEI----LDELLKYLS---E---LS-D---- 353 (526)
T ss_dssp HCSSSHHHHHHHHHHHHHH--HH------------------------HHHHH----HHHHHHHHH---H---C-------
T ss_pred cCCCChhHHHHHHHHHhhccccc------------------------chhhH----HHHHHHHHH---h---cc-c----
Confidence 2556677777777655544311 11223 333332220 0 00 0
Q ss_pred HHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcCh--hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhc
Q 004389 405 FKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAIST 482 (757)
Q Consensus 405 f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~ 482 (757)
.++|.+ +...+..++....+ +.++..+.+.+.. ....-.+.++..+..+..
T Consensus 354 -~~~~~~-----------------~i~~I~~la~~~~~~~~~~v~~l~~ll~~---------~~~~~~~~~~~~i~~ll~ 406 (526)
T PF01602_consen 354 -PDFRRE-----------------LIKAIGDLAEKFPPDAEWYVDTLLKLLEI---------SGDYVSNEIINVIRDLLS 406 (526)
T ss_dssp -HHHHHH-----------------HHHHHHHHHHHHGSSHHHHHHHHHHHHHC---------TGGGCHCHHHHHHHHHHH
T ss_pred -hhhhhh-----------------HHHHHHHHHhccCchHHHHHHHHHHhhhh---------ccccccchHHHHHHHHhh
Confidence 125555 55666665555443 4566666655542 112224455556666665
Q ss_pred ccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-ChHHHHHHHHHHHHH
Q 004389 483 YVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHI 561 (757)
Q Consensus 483 ~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~Aa~al~~l 561 (757)
..+......+..++..+... .++.++..++|++|.|++.... .+ ..+.++..+.+.+.. +..++...-.++.++
T Consensus 407 ~~~~~~~~~l~~L~~~l~~~-~~~~~~~~~~wilGEy~~~~~~-~~---~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl 481 (526)
T PF01602_consen 407 NNPELREKILKKLIELLEDI-SSPEALAAAIWILGEYGELIEN-TE---SAPDILRSLIENFIEESPEVKLQILTALAKL 481 (526)
T ss_dssp HSTTTHHHHHHHHHHHHTSS-SSHHHHHHHHHHHHHHCHHHTT-TT---HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred cChhhhHHHHHHHHHHHHHh-hHHHHHHHHHhhhcccCCcccc-cc---cHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Confidence 54444345577788777764 3788999999999999998875 11 355666666555433 234888888888888
Q ss_pred HHHhhh-hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHH
Q 004389 562 CDDCRK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (757)
Q Consensus 562 ~~~~~~-~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~ 605 (757)
...... ... +.+++.+.+.... + ..+.+.|.+..+-..
T Consensus 482 ~~~~~~~~~~---~~i~~~~~~~~~~-~--s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 482 FKRNPENEVQ---NEILQFLLSLATE-D--SSDPEVRDRAREYLR 520 (526)
T ss_dssp HHHSCSTTHH---HHHHHHHHCHHHH-S---SSHHHHHHHHHHHH
T ss_pred HhhCCchhhH---HHHHHHHHHHhcc-C--CCCHHHHHHHHHHHH
Confidence 765432 232 2555555555441 0 134666666665443
No 29
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=97.31 E-value=0.0021 Score=69.62 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=92.7
Q ss_pred hhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCccccc
Q 004389 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK 645 (757)
Q Consensus 566 ~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~ 645 (757)
+..+.|++.++++.++.++..++ ..+.+++|+++++++.... |...++...++..+...++.+.++ ++
T Consensus 17 ~~di~p~~~~ll~~Lf~~i~~~~-----s~ENeylMk~iMRvl~~~~-e~~~p~~~~il~~L~~il~~v~kN----Ps-- 84 (435)
T PF03378_consen 17 KADIQPFAQQLLQNLFALIEKPG-----SAENEYLMKCIMRVLSVLQ-EDILPIAVEILQHLTAILKEVSKN----PS-- 84 (435)
T ss_dssp GGGTTCCHHHHHHHHHHHHHTT------STC-HHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHHHHHHTS--------
T ss_pred HHHhhhhHHHHHHHHHHHHhcCC-----CccchHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHhC----CC--
Confidence 45688999999999999987532 2678999999999999975 444455556666666555555544 32
Q ss_pred CcchhhHHHHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 004389 646 HPRDLTVHIDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK 710 (757)
Q Consensus 646 ~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~ 710 (757)
.+.-..+.++.+|.++|.... |+.+..+.+.+||++..++++ .-.+.+..++..+..++....
T Consensus 85 nP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~--dV~EF~PYvfQIla~Lle~~~ 149 (435)
T PF03378_consen 85 NPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQ--DVQEFIPYVFQILAQLLELRP 149 (435)
T ss_dssp -HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHT--T-TTTHHHHHHHHHHHHHHSS
T ss_pred CcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 233445788999999998764 334567899999999999987 335778888888888888654
No 30
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.015 Score=63.31 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=152.4
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhcCCCCChHH
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQ 507 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~ 507 (757)
++=.+...+..+|+. .-+++.+.+...+.+.++ ..-.-++|+..+..++...++... ...++.++..+..- .-+
T Consensus 195 ~~~a~~~~~~~Lg~~-~EPyiv~~lp~il~~~~d--~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~--kWr 269 (569)
T KOG1242|consen 195 ALLAFEAAQGNLGPP-FEPYIVPILPSILTNFGD--KINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEA--KWR 269 (569)
T ss_pred HHHHHHHHHHhcCCC-CCchHHhhHHHHHHHhhc--cchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHH--hhh
Confidence 333455556677742 333333333333322222 222346899999999888877653 23455555443211 345
Q ss_pred HHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHHh
Q 004389 508 LLQTVCLTIGAYSKWFDAASSDP-SILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAV 584 (757)
Q Consensus 508 l~~t~~~~ig~~~~~l~~~~~~~-~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~-~~l~p~l~~ll~~~~~l~ 584 (757)
-+..++.++|..+..- |..+ .+++.+++-+...|.+.. .|+.++-.++.++|+--. +.+.++++.+++.+.+-.
T Consensus 270 tK~aslellg~m~~~a---p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 270 TKMASLELLGAMADCA---PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred hHHHHHHHHHHHHHhc---hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 6667788888665433 2211 378888888888887643 499999999999998654 346677777777654321
Q ss_pred hCcCCCCCChhhHHHHHHHHHHH--HhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhh
Q 004389 585 NGEGSLKVSAEDSLHLVEALSMV--ITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (757)
Q Consensus 585 ~~~~~~~l~~~~~~~l~eai~~v--i~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (757)
..-...+.+++.. +..+. .+.+ .++-|++.+ -++.-+. ...+..+..++.+++++.
T Consensus 347 ----------~~~~e~~~~L~~ttFV~~V~----~psL-almvpiL~R---~l~eRst----~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 347 ----------CYTPECLDSLGATTFVAEVD----APSL-ALMVPILKR---GLAERST----SIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred ----------cchHHHHHhhcceeeeeeec----chhH-HHHHHHHHH---HHhhccc----hhhhhHHHHHHHHHHhhc
Confidence 0112333333321 11111 1333 345555432 2221111 122334456677777653
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHH
Q 004389 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITI-GAILEE 723 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l-~~~~~~ 723 (757)
.|..+.+++..++|-+...+..- .|++++-+-++++.+.+-+|....+-+ |.+.+.
T Consensus 405 ---Dp~~lapfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~ 461 (569)
T KOG1242|consen 405 ---DPKDLAPFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFDDLIPELSET 461 (569)
T ss_pred ---CHHHHhhhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHh
Confidence 46677889999999999888653 799999999999999998887654444 444433
No 31
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.88 E-value=1.1 Score=50.08 Aligned_cols=290 Identities=14% Similarity=0.184 Sum_probs=160.1
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhc---ChhHHHHH
Q 004389 372 VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL---GGDATLKI 448 (757)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l---~~~~~l~~ 448 (757)
..+|++.+++..++.++.-|+- ..|.. ++|++..++.++ |.+..+.+
T Consensus 792 r~kpylpqi~stiL~rLnnksa-------------~vRqq-----------------aadlis~la~Vlktc~ee~~m~~ 841 (1172)
T KOG0213|consen 792 RVKPYLPQICSTILWRLNNKSA-------------KVRQQ-----------------AADLISSLAKVLKTCGEEKLMGH 841 (1172)
T ss_pred ccccchHHHHHHHHHHhcCCCh-------------hHHHH-----------------HHHHHHHHHHHHHhccHHHHHHH
Confidence 4578888999998888876542 13555 777776666554 44567888
Q ss_pred HHHHHHHhHhhCCCCCCCcc-hhhHHHHHHHHhhcccCcc-ccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHh
Q 004389 449 LYIKFVEGVACCGNKHNEWR-PAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFD 524 (757)
Q Consensus 449 l~~~l~~~~~~~~~~~~~w~-~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~ 524 (757)
+...|-+++ ..... -+=+.|-++.+|...+..+ ...-+..+++.|. =+. -|..|..+++.++|+.+.
T Consensus 842 lGvvLyEyl------geeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~Iad--- 912 (1172)
T KOG0213|consen 842 LGVVLYEYL------GEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIAD--- 912 (1172)
T ss_pred hhHHHHHhc------CcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHh---
Confidence 877777775 12222 2223333444444333221 1222333333321 112 389999999999999874
Q ss_pred hCCCCc---hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHH
Q 004389 525 AASSDP---SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV 601 (757)
Q Consensus 525 ~~~~~~---~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~ 601 (757)
+.|+.- +++.-++..+--.-.+.+..+.+|..+|.-|++..+ | ..++..+.+-+. ..+-+.++.
T Consensus 913 rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIG----P--qdVLatLlnnLk-------vqeRq~Rvc 979 (1172)
T KOG0213|consen 913 RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIG----P--QDVLATLLNNLK-------VQERQNRVC 979 (1172)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcC----H--HHHHHHHHhcch-------HHHHHhchh
Confidence 334321 355555554422223344488888888887776543 3 233444333221 134455666
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHH
Q 004389 602 EALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (757)
Q Consensus 602 eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 681 (757)
.+++..|-+ ..|.|+ .-|=.+++.+.- +. ..---..+..++.+|...+ +-...++-.+.|++
T Consensus 980 TtvaIaIVa-----------E~c~pF-tVLPalmneYrt-Pe---~nVQnGVLkalsf~Feyig--emskdYiyav~Pll 1041 (1172)
T KOG0213|consen 980 TTVAIAIVA-----------ETCGPF-TVLPALMNEYRT-PE---ANVQNGVLKALSFMFEYIG--EMSKDYIYAVTPLL 1041 (1172)
T ss_pred hhhhhhhhh-----------hhcCch-hhhHHHHhhccC-ch---hHHHHhHHHHHHHHHHHHH--HHhhhHHHHhhHHH
Confidence 666533322 112222 112222333321 00 0011246788888888875 34567778889999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHH-HhhhhhhhhHHHHHHHHH-HHHhhcCC
Q 004389 682 KAIFDIRAWDMRTMESLCRACKYAVR-TSKRFMGITIGAILEEIQ-GLYQQHQQ 733 (757)
Q Consensus 682 ~~~l~~~~~~~~v~e~~~~~~~~~~~-~~~~~~~p~l~~~~~~l~-~~~~~~~~ 733 (757)
+..|.. .|..-++.++.+++|+.- +.|-.....+-.+++.+. +.|++.||
T Consensus 1042 eDAlmD--rD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPh 1093 (1172)
T KOG0213|consen 1042 EDALMD--RDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPH 1093 (1172)
T ss_pred HHhhcc--ccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChH
Confidence 888754 456667888999999766 345444455555555553 34555554
No 32
>PTZ00429 beta-adaptin; Provisional
Probab=96.69 E-value=2 Score=50.21 Aligned_cols=127 Identities=12% Similarity=0.098 Sum_probs=69.8
Q ss_pred CCCCHHHHHHHHHHHHHHhc-Chh-HHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 004389 16 HHPDDAVRMQADRWLQDFQH-TID-AWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (757)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~-aw~~~~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~ 92 (757)
.++|.+.|+=..-||..+-+ .|+ +...+..+..+ .+.++.+|-.|..++-+.-. ++ +-+.++..+.
T Consensus 78 ~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~-------~~----i~e~l~~~lk 146 (746)
T PTZ00429 78 PSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV-------SS----VLEYTLEPLR 146 (746)
T ss_pred CCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-------HH----HHHHHHHHHH
Confidence 45567777777777766554 555 44444444443 13455677777666653111 11 2223333333
Q ss_pred H-hcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-CCCchhHHHHHhhhchhh
Q 004389 93 K-FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-HPEFVPGFLELLTVLPEE 154 (757)
Q Consensus 93 ~-~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~-~~~~~~~~L~~L~~L~ee 154 (757)
+ .....+.||++-+.+++.+....+ +.-++.++++.+.+.+.. ++..+...+..|..+.++
T Consensus 147 k~L~D~~pYVRKtAalai~Kly~~~p-elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 147 RAVADPDPYVRKTAAMGLGKLFHDDM-QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhhCc-ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence 3 123568999999999988875443 222221256677766653 333445566666666543
No 33
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.6 Score=48.88 Aligned_cols=225 Identities=13% Similarity=0.179 Sum_probs=108.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhhhchhhc
Q 004389 77 SEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEV 155 (757)
Q Consensus 77 ~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~ee~ 155 (757)
++=..-|-.-++.+|.. .-++||.|-...+=.++.+.+..-=| -++-+.+.+... |..+.....++-.|+---
T Consensus 139 pdLARDLa~Dv~tLL~s---skpYvRKkAIl~lykvFLkYPeAlr~---~FprL~EkLeDpDp~V~SAAV~VICELArKn 212 (877)
T KOG1059|consen 139 PDLARDLADDVFTLLNS---SKPYVRKKAILLLYKVFLKYPEALRP---CFPRLVEKLEDPDPSVVSAAVSVICELARKN 212 (877)
T ss_pred chhhHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHhhhHhHhh---hHHHHHHhccCCCchHHHHHHHHHHHHHhhC
Confidence 33334566666776665 55789999776666666654422222 367777777643 322333343332221110
Q ss_pred ccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcch
Q 004389 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (757)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~ 235 (757)
-...+ .-.|..+.++.+.-+ +=+..+++|-|.+-..+.+.+.. .++..+.+.+.+-..
T Consensus 213 PknyL---------------~LAP~ffkllttSsN-NWmLIKiiKLF~aLtplEPRLgK------KLieplt~li~sT~A 270 (877)
T KOG1059|consen 213 PQNYL---------------QLAPLFYKLLVTSSN-NWVLIKLLKLFAALTPLEPRLGK------KLIEPITELMESTVA 270 (877)
T ss_pred Ccccc---------------cccHHHHHHHhccCC-CeehHHHHHHHhhccccCchhhh------hhhhHHHHHHHhhHH
Confidence 00011 122444444433211 12677888888887776432222 233333333222111
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHH-HHHHHHhhHHHHHHHcCCchh
Q 004389 236 SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIA-RLFADMGDSYVELIATGSDES 314 (757)
Q Consensus 236 ~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~-~l~~~~~~~~~~~i~~~~~~~ 314 (757)
-.--.+|+..++.-.+. .+.++|...++..+..+-.+ + ++++...+-+. -.+..++..| |..+
T Consensus 271 mSLlYECvNTVVa~s~s---~g~~d~~asiqLCvqKLr~f---i---edsDqNLKYlgLlam~KI~ktH-------p~~V 334 (877)
T KOG1059|consen 271 MSLLYECVNTVVAVSMS---SGMSDHSASIQLCVQKLRIF---I---EDSDQNLKYLGLLAMSKILKTH-------PKAV 334 (877)
T ss_pred HHHHHHHHHHheeehhc---cCCCCcHHHHHHHHHHHhhh---h---hcCCccHHHHHHHHHHHHhhhC-------HHHH
Confidence 11122344444432221 12335666666554432211 1 11122232222 1223333333 3344
Q ss_pred HHHHHHHhcccccCccchhhhhHHHHHHHHH
Q 004389 315 MLIVHALLEVASHPEYDIASMTFNFWHSLQV 345 (757)
Q Consensus 315 ~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~ 345 (757)
.+.-+++++|.+..|..|...+++..+.+..
T Consensus 335 qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 335 QAHKDLILRCLDDKDESIRLRALDLLYGMVS 365 (877)
T ss_pred HHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence 5556888999999999999999998776553
No 34
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.66 E-value=0.0068 Score=50.71 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhC
Q 004389 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~ 586 (757)
|+..+..+...+--+..+.. .+++.+++.++.++++++ +||.+||.||.++++.++..+.++++.+.+.+..+...
T Consensus 3 R~ggli~Laa~ai~l~~~~~--~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDIS--KYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHhHH--HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44555555555555544422 588999999999998875 69999999999999999999999999999999888754
No 35
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=96.46 E-value=1.9 Score=47.24 Aligned_cols=208 Identities=13% Similarity=0.127 Sum_probs=123.4
Q ss_pred CCcchhhHHHHHHHHhhcccCccc--cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH--HHhhCCCCchhHHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSIL 540 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~--~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~--~l~~~~~~~~~l~~~l~~l 540 (757)
.++..+-+++.+++++.-....++ ++.+..+...+.. ...+..+..++.++.-.++ -+..|| .-...+..+
T Consensus 202 ~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~Wi~KaLv~R~~~----~~~~~~~~L 276 (415)
T PF12460_consen 202 EDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISS-SEDSELRPQALEILIWITKALVMRGHP----LATELLDKL 276 (415)
T ss_pred CChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcc-cCCcchhHHHHHHHHHHHHHHHHcCCc----hHHHHHHHH
Confidence 335667788888888887765443 2333333333311 1233344444444433333 223455 345566666
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 004389 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL 620 (757)
Q Consensus 541 ~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l 620 (757)
+..+.+++ +...||.+|.-+..+....+.. .+. +...+ -|-
T Consensus 277 ~~lL~~~~-~g~~aA~~f~il~~d~~~~l~~-------------~~~---------------a~vkl----------Lyk 317 (415)
T PF12460_consen 277 LELLSSPE-LGQQAAKAFGILLSDSDDVLNK-------------ENH---------------ANVKL----------LYK 317 (415)
T ss_pred HHHhCChh-hHHHHHHHHhhHhcCcHHhcCc-------------ccc---------------chhhh----------HHh
Confidence 67777777 9999999999988764443332 000 00000 112
Q ss_pred HHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 004389 621 EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCR 700 (757)
Q Consensus 621 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~ 700 (757)
++++.-++..+.+-...... . ....++..++.+++.++ .+.+.+-+..++|++.+.+.. .|.++..++..
T Consensus 318 QR~F~~~~p~L~~~~~~~~~-----~--~k~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~--~~~~v~~s~L~ 387 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADD-----E--IKSNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSL--PDADVLLSSLE 387 (415)
T ss_pred HHHHHHHHHHHHHHHhhcCh-----h--hHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 22333333333232322111 0 23356788899998775 234566788999999888854 56789999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHH
Q 004389 701 ACKYAVRTSKRFMGITIGAILEEIQG 726 (757)
Q Consensus 701 ~~~~~~~~~~~~~~p~l~~~~~~l~~ 726 (757)
.+..+++.-.+.+.+++..+++.+++
T Consensus 388 tL~~~l~~~~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 388 TLKMILEEAPELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHh
Confidence 99999998888888888888887764
No 36
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.33 E-value=0.14 Score=50.94 Aligned_cols=158 Identities=11% Similarity=0.062 Sum_probs=93.3
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC-h
Q 004389 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-Q 613 (757)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~-~ 613 (757)
++..+...+.+.. .|...|+..+..++..++..+.|+++.++..+...+..+ ...-+....+++..++...+ .
T Consensus 54 ~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~-----~~~i~~~a~~~L~~i~~~~~~~ 128 (228)
T PF12348_consen 54 LLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDS-----KKFIREAANNALDAIIESCSYS 128 (228)
T ss_dssp --HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG--------HHHHHHHHHHHHHHHTTS-H-
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccc-----cHHHHHHHHHHHHHHHHHCCcH
Confidence 3344444554432 489999999999999999999999999999888877542 23456777777777777764 1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC-CcchH--HHHHHHHHHHHHHHHhcCC
Q 004389 614 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVA--DAIQRLWPIFKAIFDIRAW 690 (757)
Q Consensus 614 e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~--~~~~~~~~~l~~~l~~~~~ 690 (757)
.+. +.+. +....+. ..+..+..++..+..++...+. ...+. ..+..+.+.+...++. .
T Consensus 129 ~~~-------~~~~---l~~~~~~-------Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D--~ 189 (228)
T PF12348_consen 129 PKI-------LLEI---LSQGLKS-------KNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSD--A 189 (228)
T ss_dssp -HH-------HHHH---HHHHTT--------S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTS--S
T ss_pred HHH-------HHHH---HHHHHhC-------CCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCC--C
Confidence 221 1111 1111111 1233455677778888777762 12221 2346777777776654 6
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 004389 691 DMRTMESLCRACKYAVRTSKRFMGITI 717 (757)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~~~~~~~p~l 717 (757)
+++|++.+..++..+...+|+...-++
T Consensus 190 ~~~VR~~Ar~~~~~l~~~~~~~a~~~~ 216 (228)
T PF12348_consen 190 DPEVREAARECLWALYSHFPERAESIL 216 (228)
T ss_dssp -HHHHHHHHHHHHHHHHHH-HHH----
T ss_pred CHHHHHHHHHHHHHHHHHCCHhhccch
Confidence 899999999999999998887655444
No 37
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.20 E-value=0.39 Score=50.84 Aligned_cols=179 Identities=14% Similarity=0.093 Sum_probs=112.2
Q ss_pred HHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcC
Q 004389 511 TVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEG 588 (757)
Q Consensus 511 t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~ 588 (757)
-.+.+-|.|+-|-. +...+|..++.-+++.+ ..+..|-+.++++|+.-+..|..+..--+.++.+.-.+.
T Consensus 312 ~~m~~e~sfsvWeq-------~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds- 383 (516)
T KOG2956|consen 312 PKMLCEGSFSVWEQ-------HFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDS- 383 (516)
T ss_pred HHHHHccchhHHHH-------HHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCC-
Confidence 34445677777775 34455555555555532 366777788888888777778877776666665554331
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCc
Q 004389 589 SLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPE 668 (757)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 668 (757)
..+.-...-|+...+++...+..... .+.|+ +... .......+++++.++|..+.. +
T Consensus 384 ----~~~v~~~Aeed~~~~las~~P~~~I~----~i~~~-------Ilt~-------D~~~~~~~iKm~Tkl~e~l~~-E 440 (516)
T KOG2956|consen 384 ----QDEVMRVAEEDCLTTLASHLPLQCIV----NISPL-------ILTA-------DEPRAVAVIKMLTKLFERLSA-E 440 (516)
T ss_pred ----chhHHHHHHHHHHHHHHhhCchhHHH----HHhhH-------HhcC-------cchHHHHHHHHHHHHHhhcCH-H
Confidence 12223334444444444432222211 12222 2211 112334578999999999873 5
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHH
Q 004389 669 AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILE 722 (757)
Q Consensus 669 ~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~p~l~~~~~ 722 (757)
-+..++..+.|.+.+...+ .+..|+-.+..|+..++..+| +.|.|+|.++-.
T Consensus 441 eL~~ll~diaP~~iqay~S--~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~ 493 (516)
T KOG2956|consen 441 ELLNLLPDIAPCVIQAYDS--TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTS 493 (516)
T ss_pred HHHHhhhhhhhHHHHHhcC--chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccH
Confidence 6677888889987665544 467899999999999999999 899999976543
No 38
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=96.15 E-value=6.7 Score=50.54 Aligned_cols=214 Identities=13% Similarity=0.101 Sum_probs=124.4
Q ss_pred cchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC---chhHHHHHH
Q 004389 467 WRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD---PSILASVLS 538 (757)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~---~~~l~~~l~ 538 (757)
-...+.+++.++.++.+-... +...+|.+++.|.. .++.++..++++|+..+..-.+.... ...+++++.
T Consensus 460 ~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s--~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~ 537 (2102)
T PLN03200 460 EQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET--GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW 537 (2102)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH
Confidence 355678899999888654332 23567888887752 37899999999999987521110000 013445555
Q ss_pred HHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 004389 539 ILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (757)
Q Consensus 539 ~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~ 618 (757)
.+-.+ +++ ++..|+.++.+++........ ++++ .++... +...+..+++++|.+++..+.++...
T Consensus 538 LL~sg--d~~-~q~~Aa~AL~nLi~~~d~~~I---~~Lv----~LLlsd-----d~~~~~~aL~vLgnIlsl~~~~d~~~ 602 (2102)
T PLN03200 538 LLKNG--GPK-GQEIAAKTLTKLVRTADAATI---SQLT----ALLLGD-----LPESKVHVLDVLGHVLSVASLEDLVR 602 (2102)
T ss_pred HHhCC--CHH-HHHHHHHHHHHHHhccchhHH---HHHH----HHhcCC-----ChhHHHHHHHHHHHHHhhcchhHHHH
Confidence 44332 234 899999999999865433211 2233 334321 24667788999999988765544221
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 004389 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698 (757)
Q Consensus 619 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~ 698 (757)
-. ....-.+..|.++++..+ .+....+...|+.++.+-. ...-.-+.....|.+..++.. ++.++...+
T Consensus 603 ~g-~~~~ggL~~Lv~LL~sgs-------~~ikk~Aa~iLsnL~a~~~-d~~~avv~agaIpPLV~LLss--~~~~v~keA 671 (2102)
T PLN03200 603 EG-SAANDALRTLIQLLSSSK-------EETQEKAASVLADIFSSRQ-DLCESLATDEIINPCIKLLTN--NTEAVATQS 671 (2102)
T ss_pred Hh-hhccccHHHHHHHHcCCC-------HHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHHHHhc--CChHHHHHH
Confidence 11 001234455556665332 1122344566676665321 111122345567777777764 567888888
Q ss_pred HHHHHHHHHH
Q 004389 699 CRACKYAVRT 708 (757)
Q Consensus 699 ~~~~~~~~~~ 708 (757)
+.++..+++.
T Consensus 672 A~AL~nL~~~ 681 (2102)
T PLN03200 672 ARALAALSRS 681 (2102)
T ss_pred HHHHHHHHhC
Confidence 8998888863
No 39
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.066 Score=57.50 Aligned_cols=55 Identities=11% Similarity=0.204 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhC
Q 004389 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~ 586 (757)
|+..+++-++.+++++. .++..||.++.+++.-|+....+|.+.+.+.+..+...
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaD 136 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSAD 136 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcC
Confidence 66677776777777765 59999999999999999999999999999998887653
No 40
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.05 E-value=4.2 Score=47.33 Aligned_cols=370 Identities=12% Similarity=0.148 Sum_probs=179.6
Q ss_pred chhHHHHHhccCCcch--HHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccC--CCHHHHHHHHHH
Q 004389 220 HPLVLTALSSLHSEIL--SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSS--KDEEDVKAIARL 295 (757)
Q Consensus 220 ~~ll~~~~~~L~~~~~--~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~--~d~~~~~~~~~l 295 (757)
..+++.+-..|++++. .-.|+-|+..+........++.-..--.+++..+|.++++...+.... ...+..+-++++
T Consensus 126 p~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKi 205 (1010)
T KOG1991|consen 126 PGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKI 205 (1010)
T ss_pred hhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 4567777777777664 467888999999766543221111123467778898887665543222 123566788888
Q ss_pred HHHHhhHHHHHHHcCCchhHHHHHHHhcccccCc-----------------cchhhhhHHHHHHHHHHHhcccCccccCc
Q 004389 296 FADMGDSYVELIATGSDESMLIVHALLEVASHPE-----------------YDIASMTFNFWHSLQVILTKRDSYISFGN 358 (757)
Q Consensus 296 ~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~~~~~-----------------~~v~~~~l~fW~~l~~~~~~~~~~~~~~~ 358 (757)
|-.+...-++.-..+++.+..-+++.+.+..-|- +.+-.=++.+.+++.+..-+ +.+.
T Consensus 206 fks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~-~~~~---- 280 (1010)
T KOG1991|consen 206 FKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGS-PSLV---- 280 (1010)
T ss_pred HHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCC-cccc----
Confidence 8887665444333445556666777777666441 12333445554544432211 0000
Q ss_pred ccchHHHHHHHHH-hhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHh--
Q 004389 359 EASAEAERSRRLQ-VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLID-- 435 (757)
Q Consensus 359 ~~~~~~~~~~~~~-~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~-- 435 (757)
..+.+ .-.+ ..+.++..++.++++...-=.. ..|-.+...-| +.+.+..
T Consensus 281 ---~~~y~-~Fa~~f~~n~~~~ile~~lk~l~~~~~-~~yls~rvl~~-----------------------~l~fl~~~V 332 (1010)
T KOG1991|consen 281 ---VPEYK-EFAQMFLKNFAQGILEVFLKILEQWRQ-QLYLSDRVLYY-----------------------LLNFLEQCV 332 (1010)
T ss_pred ---chhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCHHHHHH-----------------------HHHHHHHhc
Confidence 00000 0111 1122333444444332210000 12222221111 1122211
Q ss_pred ----hhhhcChhHHHHHHHHHHHHhHhh----CCCCCCCcc-------------------hhhHHHHHHHHhhcccCccc
Q 004389 436 ----AASVLGGDATLKILYIKFVEGVAC----CGNKHNEWR-------------------PAEAALFCIRAISTYVSVVE 488 (757)
Q Consensus 436 ----~~~~l~~~~~l~~l~~~l~~~~~~----~~~~~~~w~-------------------~~Ea~l~~l~~ia~~~~~~~ 488 (757)
.+..++|. +.-.++..+.. +.+...-|+ ..=|++.++..++..-.
T Consensus 333 s~~~twkll~PH-----l~~ii~~vIFPlmc~~d~deelwe~DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~--- 404 (1010)
T KOG1991|consen 333 SHASTWKLLKPH-----LQVIIQDVIFPLMCFNDEDEELWEEDPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRG--- 404 (1010)
T ss_pred cHHHHHHHhhhH-----HHHHHHHhhhhhcCCCcccHHHHhcCHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcc---
Confidence 22333321 11112222110 111111232 22366666555443321
Q ss_pred cccHHHHHhh----cCCC----C--ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHH-HHHHHHhccCCCh-HHHHHHHH
Q 004389 489 AEVMPQVMAL----LPKL----P--QQPQLLQTVCLTIGAYSKWFDAASSDPSILAS-VLSILTSGMSTSE-DTAAAAAL 556 (757)
Q Consensus 489 ~~~l~~l~~~----l~~l----~--~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~-~l~~l~~~l~~~~-~v~~~Aa~ 556 (757)
.+.++.+++. +.+. + .+++-+..|+.++|..++.+.+..-....+.. +.+.++..+++|- -++++||+
T Consensus 405 ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~ 484 (1010)
T KOG1991|consen 405 KETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACW 484 (1010)
T ss_pred hhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHH
Confidence 2234444443 3211 2 27899999999999999988664321111222 2233444455554 49999999
Q ss_pred HHHHHHH-HhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHH
Q 004389 557 AFRHICD-DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEII 635 (757)
Q Consensus 557 al~~l~~-~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~ 635 (757)
-+..+|+ +.+.. ..+...++...+.+.+.. .+ ..+....-|+-..|+.. +....++...+.|+++.+-++.
T Consensus 485 vl~~~~~~df~d~--~~l~~ale~t~~~l~~d~--~l--PV~VeAalALq~fI~~~--~~~~e~~~~hvp~~mq~lL~L~ 556 (1010)
T KOG1991|consen 485 VLSQFSSIDFKDP--NNLSEALELTHNCLLNDN--EL--PVRVEAALALQSFISNQ--EQADEKVSAHVPPIMQELLKLS 556 (1010)
T ss_pred HHHHHHhccCCCh--HHHHHHHHHHHHHhccCC--cC--chhhHHHHHHHHHHhcc--hhhhhhHhhhhhHHHHHHHHHH
Confidence 9999984 32221 123333333333333211 22 24566666777777774 3344677888888888887777
Q ss_pred hcC
Q 004389 636 NQG 638 (757)
Q Consensus 636 ~~~ 638 (757)
+..
T Consensus 557 ne~ 559 (1010)
T KOG1991|consen 557 NEV 559 (1010)
T ss_pred Hhc
Confidence 643
No 41
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.93 E-value=3.9 Score=45.98 Aligned_cols=171 Identities=11% Similarity=0.133 Sum_probs=101.5
Q ss_pred hhhHHHhhhhhcChhH----HHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC
Q 004389 429 VADVLIDAASVLGGDA----TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP 503 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~----~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~ 503 (757)
+++++..++..+|... ..+.++..+--+.+. ++ ...-+.+.+++.+...+..-...+++++...+. .+.
T Consensus 736 ~~etv~ri~~~lg~~diderleE~lidgil~Afqe-----qt-t~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLn 809 (1172)
T KOG0213|consen 736 VAETVSRIVGRLGAADIDERLEERLIDGILYAFQE-----QT-TEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLN 809 (1172)
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHh-----cc-cchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhc
Confidence 6677777777776422 222333322222211 11 111256667887777766656788898888654 343
Q ss_pred -ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHH
Q 004389 504 -QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDCR-KKLCGYLDGLYNV 579 (757)
Q Consensus 504 -~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~Aa~al~~l~~~~~-~~l~p~l~~ll~~ 579 (757)
..|.+|..+.+++|+.+.-++...+. +.+..+=..|...++. |+ |-..--.|+..|+.-.+ ..+.|=+..|+-.
T Consensus 810 nksa~vRqqaadlis~la~Vlktc~ee-~~m~~lGvvLyEylgeeypE-vLgsILgAikaI~nvigm~km~pPi~dllPr 887 (1172)
T KOG0213|consen 810 NKSAKVRQQAADLISSLAKVLKTCGEE-KLMGHLGVVLYEYLGEEYPE-VLGSILGAIKAIVNVIGMTKMTPPIKDLLPR 887 (1172)
T ss_pred CCChhHHHHHHHHHHHHHHHHHhccHH-HHHHHhhHHHHHhcCcccHH-HHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence 36899999999999999988876442 2344444445555644 45 66666666666665432 2466777777777
Q ss_pred HHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 580 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 580 ~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
+..++.+. -...++..+.-+|.|...-|
T Consensus 888 ltPILknr-----heKVqen~IdLvg~Iadrgp 915 (1172)
T KOG0213|consen 888 LTPILKNR-----HEKVQENCIDLVGTIADRGP 915 (1172)
T ss_pred chHhhhhh-----HHHHHHHHHHHHHHHHhcCc
Confidence 77776542 13345566666666665543
No 42
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.86 E-value=0.14 Score=51.02 Aligned_cols=137 Identities=14% Similarity=0.220 Sum_probs=84.0
Q ss_pred CCCcchhhHHHHHHHHhhccc-Ccccc----ccHHHHHhhcC-CCCC-hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYV-SVVEA----EVMPQVMALLP-KLPQ-QPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~-~~~~~----~~l~~l~~~l~-~l~~-~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~ 536 (757)
+.+|..+..++--+..+..+- ..... +.+..++..+. .+.+ ...|..++|.+++.++..+..+-+ .+...+
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~--~~~~~~ 95 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE--PYADIL 95 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH--HHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH--HHHHHH
Confidence 578999999999888887665 22111 11222222222 3332 567999999999999998887622 478888
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHH-HHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGL-YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~l-l~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
++.|++.+.++. .++..|..++..+++.|. .. +.+ ...+...... -+...|...++.+..++...+
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~---~~~~~~~l~~~~~~-----Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS--YS---PKILLEILSQGLKS-----KNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS---H-----HHHHHHHHHHTT------S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cH---HHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHcc
Confidence 888888887764 488899999999998776 11 222 3444433332 247789999999999999987
No 43
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.86 E-value=0.41 Score=48.36 Aligned_cols=224 Identities=12% Similarity=0.122 Sum_probs=120.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 004389 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (757)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l 583 (757)
.++.+|..++.+++..-.-+..+.-..+-...++.|+...+.+.. ....|..++..+. .+...-......+++.+.+-
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~~l~gl~~L~-~~~~~~~~~~~~i~~~l~~~ 88 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQPALKGLLALV-KMKNFSPESAVKILRSLFQN 88 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHHHHHHHHHHH-hCcCCChhhHHHHHHHHHHh
Confidence 368888888888876655444321111356777788888887766 5555578888777 33332223355566655543
Q ss_pred hhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhh
Q 004389 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (757)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (757)
..- ......+|..+++-+-.++... ...+..+-..++..+-+.+.... +++-+..+++.+..+.+.
T Consensus 89 ~~~---q~~~q~~R~~~~~ll~~l~~~~-----~~~l~~~~~~fv~~~i~~~~gEk------DPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 89 VDV---QSLPQSTRYAVYQLLDSLLENH-----REALQSMGDDFVYGFIQLIDGEK------DPRNLLLSFKLLKVILQE 154 (262)
T ss_pred CCh---hhhhHHHHHHHHHHHHHHHHHh-----HHHHHhchhHHHHHHHHHhccCC------CHHHHHHHHHHHHHHHHh
Confidence 321 1355778888888888777663 23345555566666666665433 456666777777777666
Q ss_pred cCCCcchHHHHHHHHHHHHHH----HHhcCCCH-H-HHHHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHhhcCCcch
Q 004389 664 VNHPEAVADAIQRLWPIFKAI----FDIRAWDM-R-TMESLCRACKYAVRTSKRFMGIT-IGAILEEIQGLYQQHQQPCF 736 (757)
Q Consensus 664 ~~~~~~~~~~~~~~~~~l~~~----l~~~~~~~-~-v~e~~~~~~~~~~~~~~~~~~p~-l~~~~~~l~~~~~~~~~~~~ 736 (757)
+.. .+..++++.++..= +...++|+ . ..|..-..++.++.+- +.++|+ +|-+++.+.+.... --..-
T Consensus 155 ~~~----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~~fa~~~~p~LleKL~s~~~~-~K~D~ 228 (262)
T PF14500_consen 155 FDI----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-PLFAPFAFPLLLEKLDSTSPS-VKLDS 228 (262)
T ss_pred ccc----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-HhhHHHHHHHHHHHHcCCCcH-HHHHH
Confidence 542 22333333333211 12222332 1 2344444555544422 223322 24444444333211 11335
Q ss_pred HhhHHHHHHHhCC
Q 004389 737 LYLSSEVIKVVFP 749 (757)
Q Consensus 737 l~~~~~~i~~f~~ 749 (757)
|.++..++..||.
T Consensus 229 L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 229 LQTLKACIENYGA 241 (262)
T ss_pred HHHHHHHHHHCCH
Confidence 6666777777764
No 44
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.63 E-value=0.033 Score=46.65 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=66.8
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 004389 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~ 547 (757)
+-+++.++++++.++...-..+++.+++.+. .+. ++++||+.+|+.+...++..... ...+++.++..+.+.+.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 4689999999999988776677777777643 454 48999999999999999877642 2246788888888888887
Q ss_pred h-HHHHHHHHHHHHH
Q 004389 548 E-DTAAAAALAFRHI 561 (757)
Q Consensus 548 ~-~v~~~Aa~al~~l 561 (757)
+ .|+..| ..+.++
T Consensus 81 d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAA-ELLDRL 94 (97)
T ss_pred chhHHHHH-HHHHHH
Confidence 6 366555 445444
No 45
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=95.50 E-value=1.1 Score=50.15 Aligned_cols=253 Identities=12% Similarity=0.113 Sum_probs=137.1
Q ss_pred CcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 004389 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~ 543 (757)
+-+.++.++.++..+-+...... ..+++.+.+. .+. +++.||.-++..|+++.+.-..-.+. -.=..++..+..+
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~--l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~-~~~~~l~~~i~~~ 127 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDS--LLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQL-LVDNELLPLIIQC 127 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHH-hcCccHHHHHHHH
Confidence 34567888888887777665433 2455555443 232 47999999999999875311110000 0012455566667
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhh--hh-cCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 004389 544 MSTSE-DTAAAAALAFRHICDDCRK--KL-CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (757)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~~~~--~l-~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~ 619 (757)
+.+++ .|...|+.++.+++..-.. .+ .+.. +..+.+++.. -+...|.++++.++.+.+. +++.. .+
T Consensus 128 L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~---~~~L~~l~~~-----~~~~vR~Rv~el~v~i~~~-S~~~~-~~ 197 (503)
T PF10508_consen 128 LRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNL---LSKLKSLMSQ-----SSDIVRCRVYELLVEIASH-SPEAA-EA 197 (503)
T ss_pred HcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcch---HHHHHHHHhc-----cCHHHHHHHHHHHHHHHhc-CHHHH-HH
Confidence 77765 5999999999999863211 12 2222 5666666543 1356789999999887555 32322 22
Q ss_pred HHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHH-HHHHHHHHHHHhcCCCH----HH
Q 004389 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDM----RT 694 (757)
Q Consensus 620 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~----~v 694 (757)
... ..++..+.+.+.. + +.-....+++.++.+.. .+|...=+.+ .+++.+..++..-..|+ -.
T Consensus 198 ~~~--sgll~~ll~eL~~-----d--DiLvqlnalell~~La~---~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~ 265 (503)
T PF10508_consen 198 VVN--SGLLDLLLKELDS-----D--DILVQLNALELLSELAE---TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLL 265 (503)
T ss_pred HHh--ccHHHHHHHHhcC-----c--cHHHHHHHHHHHHHHHc---ChhHHHHHHhCCHHHHHHHHHhccccCCcccchh
Confidence 222 1233333333332 0 11112346677777665 2344322222 36666666665544444 12
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---cchHhhHHHH
Q 004389 695 MESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEV 743 (757)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~~~~~~ 743 (757)
+-....+++.+...-...+....|.++..+...++.... .+.++.++.+
T Consensus 266 l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 266 LPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred hhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 244446666666554444555567777777766554332 3344444433
No 46
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=95.45 E-value=0.77 Score=50.09 Aligned_cols=204 Identities=11% Similarity=0.100 Sum_probs=111.4
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh----CcCCCCCChhhHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN----GEGSLKVSAEDSLHLVEALSM 606 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~----~~~~~~l~~~~~~~l~eai~~ 606 (757)
+...++.-|+..+..+. .=-...-++++|++..+++.+.|+...+++.+-.++. ++. ++.=..+++|++|.
T Consensus 23 ~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPs----nP~FnHylFEsi~~ 98 (435)
T PF03378_consen 23 FAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPS----NPRFNHYLFESIGA 98 (435)
T ss_dssp CHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCC----CcchhhhHHHHHHH
Confidence 45666666666554321 0123445678889888888888998888877766664 331 34456899999999
Q ss_pred HHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC---------------------
Q 004389 607 VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN--------------------- 665 (757)
Q Consensus 607 vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--------------------- 665 (757)
++.......- ..+..+-+.++.-+..++++... +-.-+.++.++.+.+.-.
T Consensus 99 lir~~~~~~~-~~v~~~E~~L~P~f~~ILq~dV~-------EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lW 170 (435)
T PF03378_consen 99 LIRFVCEADP-EAVSQFEEALFPPFQEILQQDVQ-------EFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALW 170 (435)
T ss_dssp HHHHS-GGGH-H---HHHHHHHHHHHHHHHTT-T-------TTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGG
T ss_pred HHHhccCCCh-hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchh
Confidence 9998653322 22222223333333445544321 011122233333322211
Q ss_pred -------------------CCcchH--HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hhhhhHHHHHHH
Q 004389 666 -------------------HPEAVA--DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR-FMGITIGAILEE 723 (757)
Q Consensus 666 -------------------~~~~~~--~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~-~~~p~l~~~~~~ 723 (757)
.|.-+. .-++.++.++..++.+-..| ...+.++..++..+.. .+.||++.++..
T Consensus 171 e~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D----~~gF~LL~~iv~~~p~~~l~~yl~~I~~l 246 (435)
T PF03378_consen 171 ERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND----HYGFDLLESIVENLPPEALEPYLKQIFTL 246 (435)
T ss_dssp GSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH----HHHHHHHHHHHHHS-HHHHGGGHHHHHHH
T ss_pred ccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc----hHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 000110 12345555555655442221 3467888888888866 589999999999
Q ss_pred HHHHHhhcCCcc----hHhhHHHHHHHhCCcc
Q 004389 724 IQGLYQQHQQPC----FLYLSSEVIKVVFPPE 751 (757)
Q Consensus 724 l~~~~~~~~~~~----~l~~~~~~i~~f~~~~ 751 (757)
+.+-.+...-.. |+.+.+.++..+|.+.
T Consensus 247 ll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~ 278 (435)
T PF03378_consen 247 LLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDF 278 (435)
T ss_dssp HHHHHHHC--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHH
Confidence 999888766544 5566666666666543
No 47
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.38 E-value=1.2 Score=48.66 Aligned_cols=136 Identities=15% Similarity=0.212 Sum_probs=82.5
Q ss_pred chhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 004389 468 RPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (757)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~ 542 (757)
.-.|=++++++.|+...+.-. ...+..++..+..- ..-...+++.|+++.+++--...|.. ..+..+|+.|..
T Consensus 167 ~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~-~~~~~lRn~tW~LsNlcrgk~P~P~~-~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 167 DVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKS-DKLSMLRNATWTLSNLCRGKNPSPPF-DVVAPILPALLR 244 (514)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccc-cchHHHHHHHHHHHHHHcCCCCCCcH-HHHHHHHHHHHH
Confidence 346889999999887755322 23345555554321 12368889999999998754333332 467888898888
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~-~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
.+++.+ .|..-||+|+..+....-+.+.-.++ ..+..+-.++... +...+.-.+.++|.|+..
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-----~~~v~~PaLRaiGNIvtG 309 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-----SPKVVTPALRAIGNIVTG 309 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-----CcccccHHHhhccceeec
Confidence 886654 49999999999998654332221111 1222333333321 122345677788886655
No 48
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.29 E-value=0.017 Score=42.74 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHH
Q 004389 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 561 (757)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l 561 (757)
|.+|..+++.||+.+.-....- ..+++.+++.|...+.+++ .|+..|+.||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~--~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELL--QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHH--HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6799999999998653211110 1378899999999997654 6999999998764
No 49
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=7.2 Score=42.64 Aligned_cols=196 Identities=8% Similarity=0.112 Sum_probs=122.9
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc
Q 004389 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC 570 (757)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~ 570 (757)
++-+|+++. .+++.||.-+=.+++.|-.-++..|... -.+..++.+...++.++ ..+..|-.=+..|..-.+..+.
T Consensus 210 ldGLf~~Ls--D~s~eVr~~~~t~l~~fL~eI~s~P~s~-d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l 286 (675)
T KOG0212|consen 210 LDGLFNMLS--DSSDEVRTLTDTLLSEFLAEIRSSPSSM-DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL 286 (675)
T ss_pred HHHHHHHhc--CCcHHHHHHHHHHHHHHHHHHhcCcccc-CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh
Confidence 334444443 2478888777778888888888888742 35667788877776654 3788888888899988888999
Q ss_pred CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHH-HHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcch
Q 004389 571 GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA-LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD 649 (757)
Q Consensus 571 p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~ea-i~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 649 (757)
+|+..++..+.+.++... .++..+....+.+ +..+.+. +....-+. +.++++-+.+.+.... ...
T Consensus 287 ~~~s~il~~iLpc~s~~e--~~~i~~~a~~~n~~l~~l~s~---~~~~~~id--~~~ii~vl~~~l~~~~-------~~t 352 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTE--EMSIKEYAQMVNGLLLKLVSS---ERLKEEID--YGSIIEVLTKYLSDDR-------EET 352 (675)
T ss_pred hhhhhhhhhcccCCCCCc--cccHHHHHHHHHHHHHHHHhh---hhhccccc--hHHHHHHHHHHhhcch-------HHH
Confidence 999999999888876421 2333333333331 2222222 22221111 3456666666655322 223
Q ss_pred hhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 004389 650 LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 650 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 708 (757)
...+++-+..+++..+ .-+......+++.+...+.. .+++|+..+..++..+...
T Consensus 353 ri~~L~Wi~~l~~~~p--~ql~~h~~~if~tLL~tLsd--~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 353 RIAVLNWIILLYHKAP--GQLLVHNDSIFLTLLKTLSD--RSDEVVLLALSLLASICSS 407 (675)
T ss_pred HHHHHHHHHHHHhhCc--chhhhhccHHHHHHHHhhcC--chhHHHHHHHHHHHHHhcC
Confidence 4566777777776543 34445566778877776654 5678888888888776653
No 50
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=94.75 E-value=0.38 Score=40.97 Aligned_cols=92 Identities=11% Similarity=0.148 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhccCCCh-----HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTSE-----DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-----~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~ 606 (757)
++-.+++.+...+++++ .-+.++-.|+..+.+-+++++....++++..++..++. ++-+...+++-..
T Consensus 8 ~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~-------~eL~~~al~~W~~ 80 (107)
T smart00802 8 HFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI-------PELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-------hhHHHHHHHHHHH
Confidence 34556666666565543 24889999999999999999999999999999988753 4567889999999
Q ss_pred HHhcCChHHHHHHHHHhhhhHHHH
Q 004389 607 VITELPQVDAKKALEMLCLPVVTP 630 (757)
Q Consensus 607 vi~~~~~e~~~~~l~~l~~~~~~~ 630 (757)
.+..+++++..+.+.+.+.-+++.
T Consensus 81 ~i~~L~~~~l~~ll~~~~~~i~~~ 104 (107)
T smart00802 81 LIKTLKEEELGPLLDQIFAAILPL 104 (107)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999888777777766665544
No 51
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.57 E-value=1.4 Score=44.72 Aligned_cols=136 Identities=16% Similarity=0.170 Sum_probs=85.8
Q ss_pred chhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHH
Q 004389 468 RPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILT 541 (757)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~-~~~l~~~l~~l~ 541 (757)
.-+|-++|+++-|+..-+... ...+..++..+.+-..|..+.+++.|+++.+++ .+||.- -+.+..++++|.
T Consensus 172 ~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR--GknP~P~w~~isqalpiL~ 249 (526)
T COG5064 172 DVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR--GKNPPPDWSNISQALPILA 249 (526)
T ss_pred HHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC--CCCCCCchHHHHHHHHHHH
Confidence 446889999999887644321 234666776665434588889999999999887 455531 146777788777
Q ss_pred hcc--CCChHHHHHHHHHHHHHHHHhhhhhcCCHHH-HHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcC
Q 004389 542 SGM--STSEDTAAAAALAFRHICDDCRKKLCGYLDG-LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (757)
Q Consensus 542 ~~l--~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~-ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (757)
+.+ .+++ +-.-|++|+..+....-..+.-.++. +...+.+++..+ +...+.-.+.++|.++..-
T Consensus 250 KLiys~D~e-vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-----sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 250 KLIYSRDPE-VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-----SAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHhhcCHH-HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-----cccccCHHHHhhcCeeecC
Confidence 655 4566 99999999999975432222211111 223344445432 1223456777888777664
No 52
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=94.22 E-value=4.4 Score=42.43 Aligned_cols=170 Identities=9% Similarity=0.152 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhc-c-----CCcchHH-HHHHHHHHHhhhhccCCCCCCCCchhHHH
Q 004389 194 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS-L-----HSEILSE-ASVNVISELIHYSAAGSSGGATVNMPLIQ 266 (757)
Q Consensus 194 ~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~-L-----~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~~~~~ 266 (757)
+++.+|+-+..|+... +........+++.+++. | +.|+.++ ..++++..++++..... .+.-..++.
T Consensus 43 iKkeIL~Li~t~i~~~---~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~---~~~v~~I~~ 116 (319)
T PF08767_consen 43 IKKEILKLIETFISKA---EDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELI---QPQVPQILE 116 (319)
T ss_dssp HHHHHHHHHHHHHHT----S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGC---CCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhh---hhhHHHHHH
Confidence 6678899999999853 21111233444444432 1 3466664 47888888887765321 112223444
Q ss_pred HHHHHHHhhHHHhccc-CCCHHHHHHHHHHHHHHhhHHHHHHHcCC-chhHHHHHHHhcccccCccchhhhhHHHHHHHH
Q 004389 267 VIVPQIMSLKAHLTDS-SKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSLQ 344 (757)
Q Consensus 267 ~l~~~v~~l~~~~~~~-~~d~~~~~~~~~l~~~~~~~~~~~i~~~~-~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~ 344 (757)
.++...+. .+.+. .+-++....+.+++..+.+.+...+..-| +.+..+++.++....|++.+|++.++.....+.
T Consensus 117 ~vf~~Tl~---MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll 193 (319)
T PF08767_consen 117 AVFECTLP---MINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELL 193 (319)
T ss_dssp HHHHHHHH---HHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 44433322 22222 23357788999999999888777776544 457788899999999999999999999988887
Q ss_pred HHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHh
Q 004389 345 VILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSF 386 (757)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 386 (757)
+...+.+ .+.....|+.+|..++..++.
T Consensus 194 ~~~~~~~--------------~~~~~~F~~~y~~~il~~if~ 221 (319)
T PF08767_consen 194 NNVSKTN--------------PEFANQFYQQYYLDILQDIFS 221 (319)
T ss_dssp HHHHH-S--------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 7665410 123345666666666555543
No 53
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.18 E-value=0.098 Score=45.66 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l-~~~l~ 538 (757)
.+|..++.++++++.++...++.. ...++.+++.+.. .++.++..+++++++++........ ... ..+++
T Consensus 19 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~g~l~ 94 (120)
T cd00020 19 SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAAGPEDNKL--IVLEAGGVP 94 (120)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHccCcHHHHH--HHHHCCChH
Confidence 458899999999999998754332 2456666665543 4789999999999999764322111 011 12455
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHH
Q 004389 539 ILTSGMSTSE-DTAAAAALAFRHICD 563 (757)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~ 563 (757)
.+.+.+++++ .++..|+.+|.++|+
T Consensus 95 ~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 95 KLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 5555555432 599999999999874
No 54
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.12 E-value=7.2 Score=43.01 Aligned_cols=266 Identities=13% Similarity=0.158 Sum_probs=143.0
Q ss_pred hhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhc---ChhHHHHH
Q 004389 372 VFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVL---GGDATLKI 448 (757)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l---~~~~~l~~ 448 (757)
..+|++..++..++.++.-|+-. .|.. ++|+...+..++ |....+..
T Consensus 597 r~kp~l~~ivStiL~~L~~k~p~-------------vR~~-----------------aadl~~sl~~vlk~c~e~~~l~k 646 (975)
T COG5181 597 RGKPHLSMIVSTILKLLRSKPPD-------------VRIR-----------------AADLMGSLAKVLKACGETKELAK 646 (975)
T ss_pred ccCcchHHHHHHHHHHhcCCCcc-------------HHHH-----------------HHHHHHHHHHHHHhcchHHHHHH
Confidence 45678888888888887765421 2333 556555544443 44567777
Q ss_pred HHHHHHHhHhhCCCCCCCcc-hhhHHHHHHHHhhcccCcc-ccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHh
Q 004389 449 LYIKFVEGVACCGNKHNEWR-PAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFD 524 (757)
Q Consensus 449 l~~~l~~~~~~~~~~~~~w~-~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~ 524 (757)
+...|-+++ ..+.. -.-+.+-++++|-....-. ..+-+..+++.|. -+. .|..|..+.+.++|..+.
T Consensus 647 lg~iLyE~l------ge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~--- 717 (975)
T COG5181 647 LGNILYENL------GEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICM--- 717 (975)
T ss_pred HhHHHHHhc------CcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHh---
Confidence 777777664 12232 2223334444443332211 1233444544432 122 389999999999998764
Q ss_pred hCCCCc---hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHH
Q 004389 525 AASSDP---SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLV 601 (757)
Q Consensus 525 ~~~~~~---~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~ 601 (757)
..|+.- +++.-++..+-..-..++..+..|..+|.-|.+.. .| ..++..+.+-+. ..+.+.++.
T Consensus 718 ~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai----GP--qdvL~~LlnnLk-------vqeRq~Rvc 784 (975)
T COG5181 718 NSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI----GP--QDVLDILLNNLK-------VQERQQRVC 784 (975)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc----CH--HHHHHHHHhcch-------HHHHHhhhh
Confidence 334421 34555555442222334448888888887776553 34 344555444332 134456666
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHH
Q 004389 602 EALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIF 681 (757)
Q Consensus 602 eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l 681 (757)
.+++.-|-+ ..+.|+ .-+-.+++.+. ++. ..--...+..++..|...+ +....++-.+-|++
T Consensus 785 tsvaI~iVa-----------e~cgpf-sVlP~lm~dY~-TPe---~nVQnGvLkam~fmFeyig--~~s~dYvy~itPll 846 (975)
T COG5181 785 TSVAISIVA-----------EYCGPF-SVLPTLMSDYE-TPE---ANVQNGVLKAMCFMFEYIG--QASLDYVYSITPLL 846 (975)
T ss_pred hhhhhhhhH-----------hhcCch-hhHHHHHhccc-Cch---hHHHHhHHHHHHHHHHHHH--HHHHHHHHHhhHHH
Confidence 666532222 112221 11112233222 110 0011246777888887765 34556777788988
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 004389 682 KAIFDIRAWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 682 ~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 709 (757)
+..+.. .|+.-++.+-.+++|++-.+
T Consensus 847 eDAltD--rD~vhRqta~nvI~Hl~Lnc 872 (975)
T COG5181 847 EDALTD--RDPVHRQTAMNVIRHLVLNC 872 (975)
T ss_pred Hhhhcc--cchHHHHHHHHHHHHHhcCC
Confidence 888865 46666777888888877643
No 55
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=94.07 E-value=4.9 Score=45.58 Aligned_cols=151 Identities=11% Similarity=0.123 Sum_probs=84.0
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCC--CChHHHH
Q 004389 432 VLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLL 509 (757)
Q Consensus 432 ~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l--~~~~~l~ 509 (757)
+....+..-.++ .+-...+.+..-+. +++-.-+-.||.+++.++ .+ +..+.+++.+.++ ..+|.||
T Consensus 64 l~l~~~~~~~~~-~~~l~~n~l~kdl~-----~~n~~~~~lAL~~l~~i~---~~---~~~~~l~~~v~~ll~~~~~~VR 131 (526)
T PF01602_consen 64 LYLSLYLHEDPE-LLILIINSLQKDLN-----SPNPYIRGLALRTLSNIR---TP---EMAEPLIPDVIKLLSDPSPYVR 131 (526)
T ss_dssp HHHHHHTTTSHH-HHHHHHHHHHHHHC-----SSSHHHHHHHHHHHHHH----SH---HHHHHHHHHHHHHHHSSSHHHH
T ss_pred HHHHHHhhcchh-HHHHHHHHHHHhhc-----CCCHHHHHHHHhhhhhhc---cc---chhhHHHHHHHHHhcCCchHHH
Confidence 333333333433 34445566655431 233344556666666655 22 2333333333211 3489999
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHH-HHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHHHHHHhhC
Q 004389 510 QTVCLTIGAYSKWFDAASSDPSILAS-VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 510 ~t~~~~ig~~~~~l~~~~~~~~~l~~-~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l-~p~l~~ll~~~~~l~~~ 586 (757)
++|+.++.++... .|+ .++. +++.+.+.+.+++ .|...|..++..+ .+.+.. .+.++.+...+.+++..
T Consensus 132 k~A~~~l~~i~~~---~p~---~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~ 203 (526)
T PF01602_consen 132 KKAALALLKIYRK---DPD---LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSD 203 (526)
T ss_dssp HHHHHHHHHHHHH---CHC---CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc---CHH---HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccc
Confidence 9999999887654 565 4555 5777777776543 4888888888888 332222 25556666666665532
Q ss_pred cCCCCCChhhHHHHHHHHHHH
Q 004389 587 EGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 587 ~~~~~l~~~~~~~l~eai~~v 607 (757)
.++..+..+++.+...
T Consensus 204 -----~~~~~q~~il~~l~~~ 219 (526)
T PF01602_consen 204 -----PDPWLQIKILRLLRRY 219 (526)
T ss_dssp -----CSHHHHHHHHHHHTTS
T ss_pred -----cchHHHHHHHHHHHhc
Confidence 3455556666665544
No 56
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=94.00 E-value=0.61 Score=39.95 Aligned_cols=92 Identities=9% Similarity=0.072 Sum_probs=70.9
Q ss_pred HHHHHHHHHhccCC-----ChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 533 LASVLSILTSGMST-----SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 533 l~~~l~~l~~~l~~-----~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
+-.+++.+-..+.+ +..-+.+|-+++..+.+.+++++.+..++++..++..+.. ++-+...+++-...
T Consensus 9 ~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~-------~~l~~~al~~W~~f 81 (107)
T PF08064_consen 9 ILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEI-------PELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC-------hhhHHHHHHHHHHH
Confidence 44455555444433 2247889999999999999999999999999999988753 25678889999999
Q ss_pred HhcCChHHHHHHHHHhhhhHHHHH
Q 004389 608 ITELPQVDAKKALEMLCLPVVTPL 631 (757)
Q Consensus 608 i~~~~~e~~~~~l~~l~~~~~~~l 631 (757)
+..+++++..+.+.+.+..+++.+
T Consensus 82 i~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 82 IKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHhc
Confidence 999998888888777766665543
No 57
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.19 E-value=0.72 Score=43.20 Aligned_cols=101 Identities=10% Similarity=0.042 Sum_probs=71.7
Q ss_pred HHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HhhhhhhhhHHHHHHHHHHHHh
Q 004389 653 HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVR---TSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~---~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
+...+..++.. +.++-+.+++.++.+.+...+.. .|++|+.++..++..++. ..|+.+.||+.++++.+--..+
T Consensus 58 A~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~t--r~~~V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~ 134 (183)
T PF10274_consen 58 ARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNT--RDPEVFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKN 134 (183)
T ss_pred HHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 33444444444 33566889999999999988876 689999999999999955 5799999999998887753222
Q ss_pred hc-------------CCcchHhhHHHHHHHhCCccccccc
Q 004389 730 QH-------------QQPCFLYLSSEVIKVVFPPEVLALI 756 (757)
Q Consensus 730 ~~-------------~~~~~l~~~~~~i~~f~~~~~~~~~ 756 (757)
.+ .....+.-.=++.+.+|.++.+++|
T Consensus 135 k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nI 174 (183)
T PF10274_consen 135 KNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINI 174 (183)
T ss_pred cccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHH
Confidence 22 1233444444567778888888776
No 58
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.01 E-value=0.12 Score=32.93 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=23.6
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHHHHh
Q 004389 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (757)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~ 565 (757)
+++.++++++++. +||..|+.+|..+++.|
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 3567777788775 69999999999999865
No 59
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.55 E-value=0.051 Score=40.17 Aligned_cols=53 Identities=13% Similarity=0.199 Sum_probs=39.6
Q ss_pred cchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhh
Q 004389 467 WRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAY 519 (757)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~ 519 (757)
|+-+++++++++.+++.......++++.+++.+. .+ .+++.||.++++.+|+.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 6778999999998887776655566666666543 22 24679999999999963
No 60
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=92.08 E-value=49 Score=43.18 Aligned_cols=214 Identities=14% Similarity=0.116 Sum_probs=124.3
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCch--hHHHHHHHHHh
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPS--ILASVLSILTS 542 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~--~l~~~l~~l~~ 542 (757)
.+++-++.+++++..+.... +.+.++.++..+.. ..+.++..++..+|....-...+....+ .-...++.+.+
T Consensus 542 gd~~~q~~Aa~AL~nLi~~~---d~~~I~~Lv~LLls--dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~ 616 (2102)
T PLN03200 542 GGPKGQEIAAKTLTKLVRTA---DAATISQLTALLLG--DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQ 616 (2102)
T ss_pred CCHHHHHHHHHHHHHHHhcc---chhHHHHHHHHhcC--CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHH
Confidence 45787899999999886653 33456777766532 3466666677777776442222110000 00124444444
Q ss_pred ccCCC-hHHHHHHHHHHHHHHHHhhhh---h--cCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 004389 543 GMSTS-EDTAAAAALAFRHICDDCRKK---L--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (757)
Q Consensus 543 ~l~~~-~~v~~~Aa~al~~l~~~~~~~---l--~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~ 616 (757)
-+.++ +.++..|+.++.++|....+. + ..-+++++..+. .+ +.+.+.....+++++......++.
T Consensus 617 LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs----s~-----~~~v~keAA~AL~nL~~~~~~~q~ 687 (2102)
T PLN03200 617 LLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT----NN-----TEAVATQSARALAALSRSIKENRK 687 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh----cC-----ChHHHHHHHHHHHHHHhCCCHHHH
Confidence 44443 359999999999999743331 1 245666666543 21 356788888899988876654444
Q ss_pred HHHHHH-hhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHH
Q 004389 617 KKALEM-LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRT 694 (757)
Q Consensus 617 ~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v 694 (757)
...... .+.|++. .++... ......++..++.+++. ++....+. ....|.+..++.. ++++.
T Consensus 688 ~~~v~~GaV~pL~~----LL~~~d-------~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv~lLr~--G~~~~ 751 (2102)
T PLN03200 688 VSYAAEDAIKPLIK----LAKSSS-------IEVAEQAVCALANLLSD---PEVAAEALAEDIILPLTRVLRE--GTLEG 751 (2102)
T ss_pred HHHHHcCCHHHHHH----HHhCCC-------hHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHHHHHHh--CChHH
Confidence 333332 4555443 343211 12334566667766653 33333332 3467777777765 56788
Q ss_pred HHHHHHHHHHHHHH
Q 004389 695 MESLCRACKYAVRT 708 (757)
Q Consensus 695 ~e~~~~~~~~~~~~ 708 (757)
++.++.++..+.+.
T Consensus 752 k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 752 KRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888777764
No 61
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.69 E-value=30 Score=39.81 Aligned_cols=94 Identities=19% Similarity=0.172 Sum_probs=51.5
Q ss_pred hHHHHHHHHhhcccCccccccHHHHHhhcCC---C-CChHHHHHHHHHHHHhhHHHHhhC-----CCC--chhHHHHHHH
Q 004389 471 EAALFCIRAISTYVSVVEAEVMPQVMALLPK---L-PQQPQLLQTVCLTIGAYSKWFDAA-----SSD--PSILASVLSI 539 (757)
Q Consensus 471 Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~---l-~~~~~l~~t~~~~ig~~~~~l~~~-----~~~--~~~l~~~l~~ 539 (757)
++.=-.+.-|+++..+........+...+.. . -+.+.+...+.|+||.|++.+... |.. ...+-.++.-
T Consensus 441 dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~ 520 (866)
T KOG1062|consen 441 DVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEK 520 (866)
T ss_pred hhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHH
Confidence 3333455556666554433333333333321 1 135667889999999999988652 211 1223333333
Q ss_pred H-HhccCCChHHHHHHHHHHHHHHHHh
Q 004389 540 L-TSGMSTSEDTAAAAALAFRHICDDC 565 (757)
Q Consensus 540 l-~~~l~~~~~v~~~Aa~al~~l~~~~ 565 (757)
+ .....+ ..+..+|-.|+.++....
T Consensus 521 v~~~~~s~-~~tk~yal~Al~KLSsr~ 546 (866)
T KOG1062|consen 521 VLMSHSSD-STTKGYALTALLKLSSRF 546 (866)
T ss_pred HHHhccch-HHHHHHHHHHHHHHHhhc
Confidence 3 233333 348889999999887643
No 62
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.45 E-value=15 Score=41.51 Aligned_cols=95 Identities=14% Similarity=0.180 Sum_probs=59.1
Q ss_pred HHHHhhcccCccc-cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHH
Q 004389 476 CIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAA 553 (757)
Q Consensus 476 ~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~ 553 (757)
+++.++.-+.++- .+.-+.+|.++.. +.|.+|..++.++-+. |-++|+ -+.++++-|...|.+|+ .|+++
T Consensus 129 AL~GLS~fvTpdLARDLa~Dv~tLL~s--skpYvRKkAIl~lykv---FLkYPe---Alr~~FprL~EkLeDpDp~V~SA 200 (877)
T KOG1059|consen 129 ALSGLSCIVTPDLARDLADDVFTLLNS--SKPYVRKKAILLLYKV---FLKYPE---ALRPCFPRLVEKLEDPDPSVVSA 200 (877)
T ss_pred eecccccccCchhhHHHHHHHHHHHhc--CchHHHHHHHHHHHHH---HHhhhH---hHhhhHHHHHHhccCCCchHHHH
Confidence 3344444444443 3455667776643 3689999888877543 344576 78999999999998876 47777
Q ss_pred HHHHHHHHHHHhhhhhcCCHHHHHH
Q 004389 554 AALAFRHICDDCRKKLCGYLDGLYN 578 (757)
Q Consensus 554 Aa~al~~l~~~~~~~l~p~l~~ll~ 578 (757)
|..-+-.+++...+...|..|.+..
T Consensus 201 AV~VICELArKnPknyL~LAP~ffk 225 (877)
T KOG1059|consen 201 AVSVICELARKNPQNYLQLAPLFYK 225 (877)
T ss_pred HHHHHHHHHhhCCcccccccHHHHH
Confidence 6655555554444444444444433
No 63
>PRK09687 putative lyase; Provisional
Probab=91.30 E-value=19 Score=36.89 Aligned_cols=137 Identities=9% Similarity=0.035 Sum_probs=75.8
Q ss_pred hcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 004389 439 VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGA 518 (757)
Q Consensus 439 ~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~ 518 (757)
.+|.+.++..+...+. +.+-..+..+..+++.++..-.. ..+.++.+...+.+ ..++.||..++..+|.
T Consensus 49 ~~~~~~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~~~~~-~~~a~~~L~~l~~~-D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 49 LRGGQDVFRLAIELCS---------SKNPIERDIGADILSQLGMAKRC-QDNVFNILNNLALE-DKSACVRASAINATGH 117 (280)
T ss_pred hcCcchHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCCCccc-hHHHHHHHHHHHhc-CCCHHHHHHHHHHHhc
Confidence 4565556555444332 23345567888888887653211 11233333333222 2378999999999998
Q ss_pred hHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhH
Q 004389 519 YSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (757)
Q Consensus 519 ~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~ 597 (757)
++. ..+. ..+.++..+...+.++. .|+..|+.||.++.. +.-+..+..++..+ +.+.|
T Consensus 118 ~~~---~~~~---~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~-----~~~VR 176 (280)
T PRK09687 118 RCK---KNPL---YSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDP-----NGDVR 176 (280)
T ss_pred ccc---cccc---cchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCC-----CHHHH
Confidence 742 1111 23455555555555433 488888888854421 22334444444332 34677
Q ss_pred HHHHHHHHHH
Q 004389 598 LHLVEALSMV 607 (757)
Q Consensus 598 ~~l~eai~~v 607 (757)
...++++|.+
T Consensus 177 ~~A~~aLg~~ 186 (280)
T PRK09687 177 NWAAFALNSN 186 (280)
T ss_pred HHHHHHHhcC
Confidence 8888888866
No 64
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.23 E-value=3.7 Score=45.03 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhh---hhcC--CHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH--
Q 004389 549 DTAAAAALAFRHICDDCRK---KLCG--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE-- 621 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~---~l~p--~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~-- 621 (757)
.++..||+|+.+++..... .+.. -++. +..++.. -+.+.+++.+=|+|.++..-| ..+.+..
T Consensus 125 ~lq~eAAWaLTnIAsgtse~T~~vv~agavp~----fi~Ll~s-----~~~~v~eQavWALgNIagds~--~~Rd~vl~~ 193 (514)
T KOG0166|consen 125 TLQFEAAWALTNIASGTSEQTKVVVDAGAVPI----FIQLLSS-----PSADVREQAVWALGNIAGDSP--DCRDYVLSC 193 (514)
T ss_pred hHHHHHHHHHHHHhcCchhhccccccCCchHH----HHHHhcC-----CcHHHHHHHHHHHhccccCCh--HHHHHHHhh
Confidence 4999999999999975432 2221 2332 2333433 246788999999999887743 3333222
Q ss_pred HhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004389 622 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 701 (757)
Q Consensus 622 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~ 701 (757)
..+.|++..+..- . .........=+++.++|+-+ |.|-...+..++|++..++.+ .|++|..-+|-+
T Consensus 194 g~l~pLl~~l~~~----~------~~~~lRn~tW~LsNlcrgk~-P~P~~~~v~~iLp~L~~ll~~--~D~~Vl~Da~WA 260 (514)
T KOG0166|consen 194 GALDPLLRLLNKS----D------KLSMLRNATWTLSNLCRGKN-PSPPFDVVAPILPALLRLLHS--TDEEVLTDACWA 260 (514)
T ss_pred cchHHHHHHhccc----c------chHHHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHHHHhc--CCHHHHHHHHHH
Confidence 2455554333211 1 01122234455777777765 667778889999999998854 789999999999
Q ss_pred HHHHHHHhhhhhhhhHH-HHHHHHHHHHh
Q 004389 702 CKYAVRTSKRFMGITIG-AILEEIQGLYQ 729 (757)
Q Consensus 702 ~~~~~~~~~~~~~p~l~-~~~~~l~~~~~ 729 (757)
+..+...-.+.+.-.+. .+++.++..+.
T Consensus 261 lsyLsdg~ne~iq~vi~~gvv~~LV~lL~ 289 (514)
T KOG0166|consen 261 LSYLTDGSNEKIQMVIDAGVVPRLVDLLG 289 (514)
T ss_pred HHHHhcCChHHHHHHHHccchHHHHHHHc
Confidence 98877654444443332 24444444443
No 65
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.04 E-value=4.8 Score=38.11 Aligned_cols=143 Identities=11% Similarity=0.146 Sum_probs=80.9
Q ss_pred HHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH--HHhhCCCCchhHHHHHHHHHhccCCCh-H
Q 004389 473 ALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK--WFDAASSDPSILASVLSILTSGMSTSE-D 549 (757)
Q Consensus 473 ~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~--~l~~~~~~~~~l~~~l~~l~~~l~~~~-~ 549 (757)
++-+++-++-..+.--+.+++.+...|. ..+|.||++++.++..+-. +++-. +.++..++..+.+++ .
T Consensus 8 ~i~~l~DL~~r~~~~ve~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~k-------~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 8 AIIALGDLCIRYPNLVEPYLPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKVK-------GQLFSRILKLLVDENPE 78 (178)
T ss_pred HHHHHHHHHHhCcHHHHhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceeeh-------hhhhHHHHHHHcCCCHH
Confidence 4444554444444333456666766654 2479999999999988643 22222 233344445555543 5
Q ss_pred HHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhhH
Q 004389 550 TAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-QVDAKKALEMLCLPV 627 (757)
Q Consensus 550 v~~~Aa~al~~l~~~-~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~-~e~~~~~l~~l~~~~ 627 (757)
++..|...|..+... .+..+.+.++.++..+.+..+.+.....+.+.+..+|+-+ +..++ ++........++.-+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fl---l~~i~~d~~~~~l~~kl~~~~ 155 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFL---LDFIDKDKQKESLVEKLCQRF 155 (178)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHH---HHHcCcHHHHHHHHHHHHHHH
Confidence 999999999999877 4555656666666655443221100024566677777666 44554 333334444444443
No 66
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=19 Score=41.55 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhc---C--CHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHH-HHHH
Q 004389 549 DTAAAAALAFRHICDDCRKKLC---G--YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK-ALEM 622 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~~l~---p--~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~-~l~~ 622 (757)
+++..||+|+..+|+-|..... - -++.+++.+..+- . .+..++.++|+-.+-..=|.+-.+. .+..
T Consensus 227 DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~Ie------y--iDvAEQ~LqALE~iSR~H~~AiL~AG~l~a 298 (1051)
T KOG0168|consen 227 DIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIE------Y--IDVAEQSLQALEKISRRHPKAILQAGALSA 298 (1051)
T ss_pred HHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhh------h--hHHHHHHHHHHHHHHhhccHHHHhcccHHH
Confidence 4999999999999999865432 2 4677777776542 1 2445566666654444433222221 1111
Q ss_pred hhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004389 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (757)
Q Consensus 623 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~ 702 (757)
+-.++.-+.... +. .+|...+.+.+.+. ++.+ .++-+..|+|..+++. .|...+|.+|.|+
T Consensus 299 -~LsylDFFSi~a------------QR--~AlaiaaN~Cksi~-sd~f-~~v~ealPlL~~lLs~--~D~k~ies~~ic~ 359 (1051)
T KOG0168|consen 299 -VLSYLDFFSIHA------------QR--VALAIAANCCKSIR-SDEF-HFVMEALPLLTPLLSY--QDKKPIESVCICL 359 (1051)
T ss_pred -HHHHHHHHHHHH------------HH--HHHHHHHHHHhcCC-Cccc-hHHHHHHHHHHHHHhh--ccchhHHHHHHHH
Confidence 111221111111 01 12222333333333 2222 3345578999999876 5678899999999
Q ss_pred HHHHHHh--hhhhhhhH--HHHHHHHHHHHhh
Q 004389 703 KYAVRTS--KRFMGITI--GAILEEIQGLYQQ 730 (757)
Q Consensus 703 ~~~~~~~--~~~~~p~l--~~~~~~l~~~~~~ 730 (757)
.+++..+ +++....| +.+++.+.+....
T Consensus 360 ~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 360 TRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred HHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 9998865 23333222 3355555444433
No 67
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=90.85 E-value=4.5 Score=34.57 Aligned_cols=101 Identities=12% Similarity=0.175 Sum_probs=66.3
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 004389 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESL 698 (757)
Q Consensus 619 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~ 698 (757)
+++.-+--+++.+.+.+...... .....-...+..++.+++ +. +..+..+.-|++-.|...++. +++.+.+
T Consensus 4 fL~~~~Lgil~~f~~~l~d~~~~---~~~~ek~~~l~si~~lI~-~~-~~~i~~~~pQI~a~L~sal~~----~~l~~~a 74 (107)
T PF08064_consen 4 FLQPHILGILTRFSDVLNDLRGK---KPIPEKKRALRSIEELIK-LG-GSHISSARPQIMACLQSALEI----PELREEA 74 (107)
T ss_pred HHHHHHHHHHHHHHHHHhccccC---CCHHHHHHHHHHHHHHHH-Hh-HHHHHHHHHHHHHHHHHHhCC----hhhHHHH
Confidence 34444445556666666652110 112233457778888887 33 245556667777777776654 6899999
Q ss_pred HHHHHHHHHHhhh-hhhhhHHHHHHHHHHHH
Q 004389 699 CRACKYAVRTSKR-FMGITIGAILEEIQGLY 728 (757)
Q Consensus 699 ~~~~~~~~~~~~~-~~~p~l~~~~~~l~~~~ 728 (757)
++++..+++.+++ +..|+++.++-.++..+
T Consensus 75 l~~W~~fi~~L~~~~l~~ll~~~~~~l~~~~ 105 (107)
T PF08064_consen 75 LSCWNCFIKTLDEEDLGPLLDQIFAILLPLW 105 (107)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999864 68899888877776554
No 68
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.67 E-value=38 Score=39.16 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=77.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCcccccC-cchhhHHHHHHHHHhhhcCC---CcchHHHHHHHHHHHHHHHHhc-C
Q 004389 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKH-PRDLTVHIDRFAYIFRYVNH---PEAVADAIQRLWPIFKAIFDIR-A 689 (757)
Q Consensus 615 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~-~ 689 (757)
+++..+..+..|+..-+++.........++.. -+..-..+-.++++|-+++. |+=+-.-++.-|+.+...++-- +
T Consensus 169 EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p 248 (960)
T KOG1992|consen 169 EIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNP 248 (960)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCc
Confidence 34456777788888777776654432222111 11123345577888888874 3333344667777777777521 1
Q ss_pred ---C-------CHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh-cCCcch
Q 004389 690 ---W-------DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQ-HQQPCF 736 (757)
Q Consensus 690 ---~-------~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~-~~~~~~ 736 (757)
+ -..++..+|..+-.-..-+.+.+.||+|.++....+-... ++.+.|
T Consensus 249 ~le~~~ee~~~l~~lka~ICEi~~LY~~kYeEef~~fl~~fv~~~W~LL~~~s~~~ky 306 (960)
T KOG1992|consen 249 LLESDEEEATVLDKLKAQICEIFNLYATKYEEEFQPFLPDFVTATWNLLVSTSPDTKY 306 (960)
T ss_pred ccccCcccccHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHhcCCCccH
Confidence 1 1456677899999888889999999999999888766543 555544
No 69
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=90.55 E-value=7.8 Score=35.94 Aligned_cols=121 Identities=16% Similarity=0.175 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH------------------------------HH
Q 004389 573 LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL------------------------------EM 622 (757)
Q Consensus 573 l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l------------------------------~~ 622 (757)
-|.|++.+.+++.++ -+.+-|..+++.+| ++.++++-+.+..- +-
T Consensus 8 yP~LL~~L~~iLk~e----~s~~iR~E~lr~lG-ilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 8 YPELLDILLNILKTE----QSQSIRREALRVLG-ILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred hHHHHHHHHHHHHhC----CCHHHHHHHHHHhh-hccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 467888888888764 24677889999998 46777654433100 00
Q ss_pred hhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004389 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (757)
Q Consensus 623 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~ 702 (757)
...-.+..|.++++..+ ...+-...++.+-.+|++++. .+.+++.+++|.+..++... ++...|..+.-+
T Consensus 83 y~~vvi~~L~~iL~D~s------Ls~~h~~vv~ai~~If~~l~~--~cv~~L~~viP~~l~~i~~~--~~~~~e~~~~qL 152 (160)
T PF11865_consen 83 YPTVVINALMRILRDPS------LSSHHTAVVQAIMYIFKSLGL--KCVPYLPQVIPIFLRVIRTC--PDSLREFYFQQL 152 (160)
T ss_pred HHHHHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHHhcCc--CchhHHHHHhHHHHHHHHhC--CHHHHHHHHHHH
Confidence 11111222222222211 111122345666666666542 45788888888888888754 337777776666
Q ss_pred HHHHHH
Q 004389 703 KYAVRT 708 (757)
Q Consensus 703 ~~~~~~ 708 (757)
..++..
T Consensus 153 ~~lv~i 158 (160)
T PF11865_consen 153 ADLVSI 158 (160)
T ss_pred HHHHHH
Confidence 666554
No 70
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.42 E-value=20 Score=42.57 Aligned_cols=222 Identities=15% Similarity=0.078 Sum_probs=119.3
Q ss_pred chhhHHHHHHHHhhcccCccc-cccHHHHHhhcC---CCCChHHHHHH----HHHHHHhhHHH-----------------
Q 004389 468 RPAEAALFCIRAISTYVSVVE-AEVMPQVMALLP---KLPQQPQLLQT----VCLTIGAYSKW----------------- 522 (757)
Q Consensus 468 ~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~---~l~~~~~l~~t----~~~~ig~~~~~----------------- 522 (757)
.-+||++|+..+++..-.+.+ ++++.++...+. -|+...-+|++ .-+.+||.+.+
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~ 522 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTN 522 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhh
Confidence 346999999999998866542 344555555432 12222223322 23356664433
Q ss_pred -----------HhhCCCCchhHHHHHHHHHh-ccCC-ChHHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHhhCcC
Q 004389 523 -----------FDAASSDPSILASVLSILTS-GMST-SEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEG 588 (757)
Q Consensus 523 -----------l~~~~~~~~~l~~~l~~l~~-~l~~-~~~v~~~Aa~al~~l~~~~~~~l~-p~l~~ll~~~~~l~~~~~ 588 (757)
++.+|+ |..++++=++. .+.| ...++..||+|+.++...-.+.+. -++++++....
T Consensus 523 rsNcy~~l~~~ia~~~~---y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~l------- 592 (1133)
T KOG1943|consen 523 RSNCYLDLCVSIAEFSG---YREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTL------- 592 (1133)
T ss_pred hhhHHHHHhHHHHhhhh---HHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhc-------
Confidence 233333 66666664433 2433 224999999999999887777777 56777766532
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcch-hhHHHHHHHHHhhhcCCC
Q 004389 589 SLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD-LTVHIDRFAYIFRYVNHP 667 (757)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~~~~~~~~ 667 (757)
..+...+.-..-+.|.|+.+.- ...+....+-+.-++.+.+++.... +....+. -......++++++.++..
T Consensus 593 --s~~~~~r~g~~la~~ev~~~~~--~l~~~~~~l~e~~i~~l~~ii~~~~---~~~~~rg~~~lmr~~~~~~Ie~~s~s 665 (1133)
T KOG1943|consen 593 --SKDASMRHGVFLAAGEVIGALR--KLEPVIKGLDENRIAGLLSIIPPIC---DRYFYRGQGTLMRQATLKFIEQLSLS 665 (1133)
T ss_pred --CCChHHhhhhHHHHHHHHHHhh--hhhhhhhhhHHHHhhhhhhhccHHH---HHHhccchHHHHHHHHHHHHHHhhhc
Confidence 1245677778888888877731 1111122222222222222221110 0000000 012334566666666543
Q ss_pred cc--hHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 004389 668 EA--VAD-AIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 668 ~~--~~~-~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 709 (757)
++ ... +.+..|-++.+.++.+ ..+++.+...++.++..+
T Consensus 666 ~~~~~~~~v~e~~~~ll~~~l~~~---n~i~~~av~av~~l~s~y 707 (1133)
T KOG1943|consen 666 KDRLFQDFVIENWQMLLAQNLTLP---NQIRDAAVSAVSDLVSTY 707 (1133)
T ss_pred cchhHHHHHHHHHHHHHHHhhcch---HHHHHHHHHHHHHHHHHH
Confidence 33 222 3455666776666332 267788888888877754
No 71
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.38 E-value=31 Score=38.41 Aligned_cols=164 Identities=11% Similarity=0.109 Sum_probs=87.9
Q ss_pred HHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCC--CChHHHH
Q 004389 432 VLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKL--PQQPQLL 509 (757)
Q Consensus 432 ~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l--~~~~~l~ 509 (757)
.+..+...+|.+++++++ ...+ ++ -.+|+.+..++.+...|++-..-.--.++..++..|... ..|..||
T Consensus 304 a~~vva~algv~~llpfl----~a~c---~S-rkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~l~D~~~~vR 375 (975)
T COG5181 304 AVGVVADALGVEELLPFL----EALC---GS-RKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKLLKDRSRFVR 375 (975)
T ss_pred HHHHHHHhhCcHHHHHHH----HHHh---cC-ccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHHhhccceeee
Confidence 333445567766555533 2221 22 468999999999999998876443334566677666532 2366677
Q ss_pred HHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh--------hhcCCHHHHHHHHH
Q 004389 510 QTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK--------KLCGYLDGLYNVYR 581 (757)
Q Consensus 510 ~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~--------~l~p~l~~ll~~~~ 581 (757)
-.+...++..++-. .|-.......++.-|-++ ++.+-.+.|..|....+. ...-+--..+..++
T Consensus 376 i~tA~alS~lae~~--~Pygie~fd~vl~pLw~g------~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ 447 (975)
T COG5181 376 IDTANALSYLAELV--GPYGIEQFDEVLCPLWEG------ASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVF 447 (975)
T ss_pred ehhHhHHHHHHHhc--CCcchHHHHHHHHHHHHH------HHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHH
Confidence 66666666555432 242112334444434333 444445556666655432 11224455778888
Q ss_pred HHhhCcCCCCCChhhHHHHHHHHHHHHhcCChH
Q 004389 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (757)
Q Consensus 582 ~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e 614 (757)
..+.+++. .+. --..+++.++.-+....+.
T Consensus 448 ref~spde-emk--k~~l~v~~~C~~v~~~tp~ 477 (975)
T COG5181 448 REFKSPDE-EMK--KDLLVVERICDKVGTDTPW 477 (975)
T ss_pred HHhCCchh-hcc--hhHHHHHHHHhccCCCCHH
Confidence 77765421 111 1234555555444444433
No 72
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=90.16 E-value=8.6 Score=39.28 Aligned_cols=143 Identities=14% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH-------HHhhCCCCchh
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK-------WFDAASSDPSI 532 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~-------~l~~~~~~~~~ 532 (757)
.+--++||+ |++.-|+.+-... +...+|.++++|.. ....|+..+.|.+|..+. +.-.. ..
T Consensus 128 ~~mlqfEAa-WalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s--~~~~V~eQavWALGNiAGDS~~~RD~vL~~----ga 200 (526)
T COG5064 128 RDMLQFEAA-WALTNIASGTTQQTKVVVDAGAVPLFIQLLSS--TEDDVREQAVWALGNIAGDSEGCRDYVLQC----GA 200 (526)
T ss_pred hhHHHHHHH-HHHhhhccCcccceEEEEeCCchHHHHHHHcC--chHHHHHHHHHHhccccCCchhHHHHHHhc----Cc
Confidence 445557766 5667677664432 23568888888753 367899999999998753 22222 25
Q ss_pred HHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcC
Q 004389 533 LASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (757)
Q Consensus 533 l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~-l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (757)
+.++|.++.+.-.+-. .-..|.+.|.++|+.-.+. =-..+..-+..+.+++-. .+.+.....+=||+.+ +-.
T Consensus 201 leplL~ll~ss~~~is-mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys-----~D~evlvDA~WAiSYl-sDg 273 (526)
T COG5064 201 LEPLLGLLLSSAIHIS-MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS-----RDPEVLVDACWAISYL-SDG 273 (526)
T ss_pred hHHHHHHHHhccchHH-HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh-----cCHHHHHHHHHHHHHh-ccC
Confidence 7888888865443333 6677888899998743221 112233444555555542 4556666666666654 334
Q ss_pred ChHHHHHHHH
Q 004389 612 PQVDAKKALE 621 (757)
Q Consensus 612 ~~e~~~~~l~ 621 (757)
|.|.+...+.
T Consensus 274 ~~E~i~avld 283 (526)
T COG5064 274 PNEKIQAVLD 283 (526)
T ss_pred cHHHHHHHHh
Confidence 5565554443
No 73
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.15 E-value=5 Score=37.45 Aligned_cols=133 Identities=12% Similarity=0.135 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 004389 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 519 (757)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~ 519 (757)
.+..+...+.+.+. +.+...+-+++..+..+.+.++.+ ....+..+++.+.+ ++.+.+...++.+++.+
T Consensus 22 ~l~~l~~ri~~LL~-----s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-~~~~~~~~~ai~~L~~l 95 (165)
T PF08167_consen 22 ALHKLVTRINSLLQ-----SKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-PDPPSVLEAAIITLTRL 95 (165)
T ss_pred HHHHHHHHHHHHhC-----CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 44445555555442 233454557888888888776432 23556677776665 55678899999999999
Q ss_pred HHHHhhCCCCc-----hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHh
Q 004389 520 SKWFDAASSDP-----SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAV 584 (757)
Q Consensus 520 ~~~l~~~~~~~-----~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~ 584 (757)
-......|+.. ..++.+++.+++.++++. +...+..++..+.......+.|+...+-..+..++
T Consensus 96 ~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~~~-~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~~ll 164 (165)
T PF08167_consen 96 FDLIRGKPTLTREIATPNLPKFIQSLLQLLQDSS-CPETALDALATLLPHHPTTFRPFANKIESALLSLL 164 (165)
T ss_pred HHHhcCCCchHHHHhhccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHCCccccchHHHHHHHHHHHh
Confidence 98888777632 357777777777665444 77788888888887777778888887777665543
No 74
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=89.61 E-value=2.7 Score=39.47 Aligned_cols=87 Identities=17% Similarity=0.136 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 533 LASVLSILTSGMSTSE-DTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 533 l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~-~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
....|+.++.|+++.+ +.+--|-..+..+.+. ....+.|.+++++-.+...+++. +.+.....++++..++.+
T Consensus 36 y~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr-----~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 36 YHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTR-----DPEVFCATLKALQQLVTS 110 (183)
T ss_pred hhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHh
Confidence 4466777888886643 4778888889999988 67789999999999999999853 467777788888777444
Q ss_pred CC--hHHHHHHHHHhh
Q 004389 611 LP--QVDAKKALEMLC 624 (757)
Q Consensus 611 ~~--~e~~~~~l~~l~ 624 (757)
-+ .+...+++.+++
T Consensus 111 ~~~vG~aLvPyyrqLL 126 (183)
T PF10274_consen 111 SDMVGEALVPYYRQLL 126 (183)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 21 244556666654
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=88.70 E-value=27 Score=38.21 Aligned_cols=190 Identities=15% Similarity=0.178 Sum_probs=108.0
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHH
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL 508 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l 508 (757)
+...+..+....+.+..+..+.+.+.........+....+.+|...|...++.-...+...+++..+++.+.. +.....
T Consensus 210 ~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~-~~~g~~ 288 (415)
T PF12460_consen 210 ALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS-PELGQQ 288 (415)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC-hhhHHH
Confidence 4445555555544343333333333332211112234566777777777776554444445667777776644 222333
Q ss_pred HHHHHHHHHhh-HHHHhh--CCCC-----chhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhh-hcCCHHHHHH
Q 004389 509 LQTVCLTIGAY-SKWFDA--ASSD-----PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKK-LCGYLDGLYN 578 (757)
Q Consensus 509 ~~t~~~~ig~~-~~~l~~--~~~~-----~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~-l~p~l~~ll~ 578 (757)
...++.++-.- .+++.+ |... +++...+++.+.++.+... ..+...-.|+..+.+..... +.++++.++-
T Consensus 289 aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 289 AAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLP 368 (415)
T ss_pred HHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 33333333332 333322 1110 1567777788877776543 26777788899999988654 5599999999
Q ss_pred HHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004389 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCL 625 (757)
Q Consensus 579 ~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~ 625 (757)
.+.+.++.+ +.+.+...++.+..++..- ++.+.+++..++.
T Consensus 369 LLlqsL~~~-----~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~ 409 (415)
T PF12460_consen 369 LLLQSLSLP-----DADVLLSSLETLKMILEEA-PELISEHLSSLIP 409 (415)
T ss_pred HHHHHhCCC-----CHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 988887643 3456777888887777775 3444455554443
No 76
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.99 E-value=80 Score=39.32 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHhhccCCCC----CC--CCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHH
Q 004389 372 VFRSAYESLVSLVSFRVQYPQD----YQ--DLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDAT 445 (757)
Q Consensus 372 ~~~~~~~~ll~~l~~k~~~p~d----~~--~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~ 445 (757)
.++|++..|+..+++-..--++ +- ..+..+.+.....|......++ +.+++..|...+. ..+
T Consensus 1165 ~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akssp-----------mmeTi~~ci~~iD-~~v 1232 (1702)
T KOG0915|consen 1165 ELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSP-----------MMETINKCINYID-ISV 1232 (1702)
T ss_pred hhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCc-----------HHHHHHHHHHhhh-HHH
Confidence 5778888888887753321111 00 0122333444456654222222 5566766766776 567
Q ss_pred HHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhc-CCCCC-hHHHHHHHHHHHHhhHHHH
Q 004389 446 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALL-PKLPQ-QPQLLQTVCLTIGAYSKWF 523 (757)
Q Consensus 446 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l-~~l~~-~~~l~~t~~~~ig~~~~~l 523 (757)
+..+...+.+....+ ..--.+=++-..+..++..+..+..++--.++..+ +.+.+ ++.+++......|-...+-
T Consensus 1233 Leelip~l~el~R~s----Vgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGS----VGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred HHHHHHHHHHHHhcc----CCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 777777777765321 22222334444555566666655555555555543 34432 6778888877777665543
Q ss_pred hhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 004389 524 DAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (757)
Q Consensus 524 ~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~ 581 (757)
..+. ...++...+..++.-.. +. ..-+|..+.+|.......|..|...++-.++
T Consensus 1309 s~dq-~qKLie~~l~~~l~k~e-s~--~siscatis~Ian~s~e~Lkn~asaILPLiF 1362 (1702)
T KOG0915|consen 1309 SPDQ-MQKLIETLLADLLGKDE-SL--KSISCATISNIANYSQEMLKNYASAILPLIF 1362 (1702)
T ss_pred ChHH-HHHHHHHHHHHHhccCC-Cc--cchhHHHHHHHHHhhHHHHHhhHHHHHHHHH
Confidence 3221 01234444433322221 22 2334444444888777888888888886654
No 77
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=87.91 E-value=36 Score=35.25 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=78.3
Q ss_pred HHHHHHHhhcccCccc--cccHHHHHhhc--CCCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 004389 473 ALFCIRAISTYVSVVE--AEVMPQVMALL--PKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (757)
Q Consensus 473 ~l~~l~~ia~~~~~~~--~~~l~~l~~~l--~~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~ 547 (757)
||...+.+-+.+.... +..+..+++.+ |.+. .++.+|..+++++|-|+-.-.+... ++++-++..+-. + +
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~--~~l~l~~~~~~~--~-~ 77 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK--EHLPLFLQALQK--D-D 77 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHh--C-C
Confidence 3444455555554222 23455666653 4554 3789999999999998754332111 244444444422 2 3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhc---------CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 548 EDTAAAAALAFRHICDDCRKKLC---------GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 548 ~~v~~~Aa~al~~l~~~~~~~l~---------p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..++..|..++..+...-+.... .....+++.+.+.+... +.+.+..+.||++.++-.
T Consensus 78 ~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-----~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 78 EEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSE-----NPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHhc
Confidence 34999999998888765443322 12345777777777642 467889999999987665
No 78
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=87.87 E-value=12 Score=31.94 Aligned_cols=98 Identities=12% Similarity=0.225 Sum_probs=62.3
Q ss_pred HhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 004389 622 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRA 701 (757)
Q Consensus 622 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~ 701 (757)
.-+--+++.+.+.+.+.. + +.....-...+..|+.+++-.+ ..+....-|++-.|...++ .+++.+.++++
T Consensus 7 ~~~LGil~~f~~~l~d~~-g--~~~~~ek~~~i~ai~~lI~~~g--~~i~~a~pQI~acL~saL~----~~eL~~~al~~ 77 (107)
T smart00802 7 DHFLGILAVFSNILHDSS-G--KKPYNEKKRALRSIGFLIKLMG--KHISSALPQIMACLQSALE----IPELRSLALRC 77 (107)
T ss_pred HHHHHHHHHHHHHHcCcc-c--CCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhC----chhHHHHHHHH
Confidence 333344455555554332 1 0111223456777887777433 3455566677777777665 47899999999
Q ss_pred HHHHHHHhhh-hhhhhHHHHHHHHHHHH
Q 004389 702 CKYAVRTSKR-FMGITIGAILEEIQGLY 728 (757)
Q Consensus 702 ~~~~~~~~~~-~~~p~l~~~~~~l~~~~ 728 (757)
+..+++.+.+ +..|++..++-.+...+
T Consensus 78 W~~~i~~L~~~~l~~ll~~~~~~i~~~~ 105 (107)
T smart00802 78 WHVLIKTLKEEELGPLLDQIFAAILPLW 105 (107)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999864 67787777776666544
No 79
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=87.85 E-value=31 Score=34.74 Aligned_cols=134 Identities=13% Similarity=0.113 Sum_probs=81.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
.+..-.|.++++++-.+..-... +..-++-+..++.. ++|.+|..++.++..++.--........+++.+..-+
T Consensus 25 ~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~ 102 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEET 102 (254)
T ss_pred CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHH
Confidence 34455788888888754432111 11234445544443 3889999999999987654433222224666666655
Q ss_pred HhccCCChHHHHHHHHHHHHHHHH--hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 541 TSGMSTSEDTAAAAALAFRHICDD--CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 541 ~~~l~~~~~v~~~Aa~al~~l~~~--~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..+--+.. ++.++-.+|.+++-. ....+.++++.++. ++..+ +...+..+++.+..+...
T Consensus 103 ~s~~lns~-~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~----LL~~G-----~~~~k~~vLk~L~nLS~n 164 (254)
T PF04826_consen 103 VSSPLNSE-VQLAGLRLLTNLTVTNDYHHMLANYIPDLLS----LLSSG-----SEKTKVQVLKVLVNLSEN 164 (254)
T ss_pred hcCCCCCH-HHHHHHHHHHccCCCcchhhhHHhhHHHHHH----HHHcC-----ChHHHHHHHHHHHHhccC
Confidence 54322344 898888999988632 23445577776654 44433 246778888888776555
No 80
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.37 E-value=6.8 Score=45.37 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=101.5
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHhhhhhc------C-------CHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHH
Q 004389 538 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLC------G-------YLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEAL 604 (757)
Q Consensus 538 ~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~------p-------~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai 604 (757)
.-++..+.+|+ +..+|+++|.-+..+|...+. + +..++..++...+.+ .+...+....+++
T Consensus 818 ~klld~Ls~~~-~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t-----~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 818 EKLLDLLSGPS-TGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFET-----APGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHhcCCcc-ccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhcc-----CCccchhHHHHHH
Confidence 33456677788 999999999999877654222 2 233344444433332 3345678999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcch-HHHHHHHHHHHHH
Q 004389 605 SMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV-ADAIQRLWPIFKA 683 (757)
Q Consensus 605 ~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~ 683 (757)
++|++.+|.+...+-+..++.-+++. +.- ++ ..-....++++.....- .+++ ..-+..+.|.+..
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~----Ls~----~D---~~v~vstl~~i~~~l~~---~~tL~t~~~~Tlvp~lLs 957 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQA----LSM----PD---VIVRVSTLRTIPMLLTE---SETLQTEHLSTLVPYLLS 957 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHh----cCC----Cc---cchhhhHhhhhhHHHHh---ccccchHHHhHHHHHHHh
Confidence 99999999766555555544333322 211 11 01112233444433221 1222 2345677888776
Q ss_pred HHHhcCCC-HHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHH
Q 004389 684 IFDIRAWD-MRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLY 728 (757)
Q Consensus 684 ~l~~~~~~-~~v~e~~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~ 728 (757)
+-....++ ..|++.+..|+..+-+... ....||-|.++..+....
T Consensus 958 ls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~L 1004 (1030)
T KOG1967|consen 958 LSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKIL 1004 (1030)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhcc
Confidence 54433333 5678999999998888554 457788888887776543
No 81
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=87.02 E-value=54 Score=39.17 Aligned_cols=238 Identities=12% Similarity=0.128 Sum_probs=119.5
Q ss_pred HHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHHhh
Q 004389 492 MPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGM---STSEDTAAAAALAFRHICDDCR 566 (757)
Q Consensus 492 l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l---~~~~~v~~~Aa~al~~l~~~~~ 566 (757)
++.++.++. .+. ....||.++++-+|+.+.-+. + .+...++..+...+ .++. .=--||.||..++..
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~---~Lad~vi~svid~~~p~e~~~-aWHgacLaLAELA~r-- 410 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P---ELADQVIGSVIDLFNPAEDDS-AWHGACLALAELALR-- 410 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H---HHHHHHHHHHHHhcCcCCchh-HHHHHHHHHHHHHhc--
Confidence 445555543 443 368999999999999876553 2 25555555554433 2223 445778888777643
Q ss_pred hhhcC-CHHHHHHHHHHHhhCc---CCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcc
Q 004389 567 KKLCG-YLDGLYNVYRTAVNGE---GSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEIL 642 (757)
Q Consensus 567 ~~l~p-~l~~ll~~~~~l~~~~---~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~ 642 (757)
.-+.| -++.++..+...+... +....+...|....-.+-++..+-.+..+++++.++..-++.. .... .
T Consensus 411 GlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~--AlFD-----r 483 (1133)
T KOG1943|consen 411 GLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIV--ALFD-----R 483 (1133)
T ss_pred CCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHH--HhcC-----c
Confidence 33333 1333333333333211 0111223334333334444444444455555555444443321 0000 0
Q ss_pred cccCcchh-hHHHHHHH------------------------HHhhhcCCCcchHHHHHHHHHHHHHHHHh--cCCCHHHH
Q 004389 643 QKKHPRDL-TVHIDRFA------------------------YIFRYVNHPEAVADAIQRLWPIFKAIFDI--RAWDMRTM 695 (757)
Q Consensus 643 ~~~~~~~~-~~~l~~l~------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~v~ 695 (757)
+-...+.. +...+.+| .....+ +.++..+-.=.-|++..++++ +-.|..++
T Consensus 484 evncRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l--~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~ir 561 (1133)
T KOG1943|consen 484 EVNCRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDL--CVSIAEFSGYREPVFNHLLTKKVCHWDVKIR 561 (1133)
T ss_pred hhhHhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHH--hHHHHhhhhHHHHHHHHHHhcccccccHHHH
Confidence 00000000 00111111 111111 111222222345666666665 22588999
Q ss_pred HHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHhhcCCcchHhhHHHHHHH
Q 004389 696 ESLCRACKYAVRTSKRFMG-ITIGAILEEIQGLYQQHQQPCFLYLSSEVIKV 746 (757)
Q Consensus 696 e~~~~~~~~~~~~~~~~~~-p~l~~~~~~l~~~~~~~~~~~~l~~~~~~i~~ 746 (757)
|.+-.++..+.....+++. -++|++++.....=-..++++++.+.+.+-..
T Consensus 562 elaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~ 613 (1133)
T KOG1943|consen 562 ELAAYALHKLSLTEPKYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGAL 613 (1133)
T ss_pred HHHHHHHHHHHHhhHHhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHh
Confidence 9999999998777777766 77888888776554455677777776665443
No 82
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=86.67 E-value=68 Score=38.92 Aligned_cols=297 Identities=15% Similarity=0.181 Sum_probs=158.6
Q ss_pred CHHHHHHHHHHHHHHhc--Chh-----HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHH
Q 004389 19 DDAVRMQADRWLQDFQH--TID-----AWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLL 91 (757)
Q Consensus 19 d~~~r~~A~~~L~~~q~--s~~-----aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l 91 (757)
..+.|.+|-+.|+.+.+ +++ ...+...++.+ ....||--|..||...+.. -..+++.+-..+-++|+..|
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~D--s~a~Vra~Al~Tlt~~L~~-Vr~~~~~daniF~eYlfP~L 512 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMD--SEADVRATALETLTELLAL-VRDIPPSDANIFPEYLFPHL 512 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcC--chHHHHHHHHHHHHHHHhh-ccCCCcccchhhHhhhhhhh
Confidence 45667788888888765 222 23455666654 4567999999999876653 34688888899999999999
Q ss_pred HHhcC--CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHh-cC---CCCCchhHHHHHhhhchhhcccccccCChH
Q 004389 92 KKFHK--GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDE-MN---SHPEFVPGFLELLTVLPEEVFNYKIAARPE 165 (757)
Q Consensus 92 ~~~~~--~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~-~~---~~~~~~~~~L~~L~~L~ee~~~~~~~~~~~ 165 (757)
..+.. .+..||--.|..|+.+|...+. |+..-.+. .. +.|+.- ..+++-. +.
T Consensus 513 ~~l~~d~~~~~vRiayAsnla~LA~tA~r-------Fle~~q~~~~~g~~n~~nse--------t~~~~~~-------~~ 570 (1431)
T KOG1240|consen 513 NHLLNDSSAQIVRIAYASNLAQLAKTAYR-------FLELTQELRQAGMLNDPNSE--------TAPEQNY-------NT 570 (1431)
T ss_pred HhhhccCccceehhhHHhhHHHHHHHHHH-------HHHHHHHHHhcccccCcccc--------ccccccc-------ch
Confidence 88653 4567888899999999987652 33332221 11 112110 2223211 23
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHH-HhhccCCCCCcccccchhHHHHHhccCCc--chHHHHH
Q 004389 166 RRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFAS-WLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASV 240 (757)
Q Consensus 166 ~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~-wi~~~~~~~~~~l~~~~ll~~~~~~L~~~--~~~~~a~ 240 (757)
.++++++.+++.. .+.+.++ -++...++.+.- ...||. . -.+.-++.-++..|++. .++.+-.
T Consensus 571 ~~~~L~~~V~~~v-------~sLlsd~~~~Vkr~Lle~i~~LC~FFGk-~----ksND~iLshLiTfLNDkDw~LR~aFf 638 (1431)
T KOG1240|consen 571 ELQALHHTVEQMV-------SSLLSDSPPIVKRALLESIIPLCVFFGK-E----KSNDVILSHLITFLNDKDWRLRGAFF 638 (1431)
T ss_pred HHHHHHHHHHHHH-------HHHHcCCchHHHHHHHHHHHHHHHHhhh-c----ccccchHHHHHHHhcCccHHHHHHHH
Confidence 3444444433332 2233332 234444444433 223332 1 13455666677777754 4555544
Q ss_pred HHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHH
Q 004389 241 NVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHA 320 (757)
Q Consensus 241 ~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ 320 (757)
|-+.-+--.-+..+ .=+.++|-+ .+.+. +.+|-.+.....-+..+.+.. ++.+ ..+.++++.
T Consensus 639 dsI~gvsi~VG~rs---------~seyllPLl---~Q~lt--D~EE~Viv~aL~~ls~Lik~~--ll~K--~~v~~i~~~ 700 (1431)
T KOG1240|consen 639 DSIVGVSIFVGWRS---------VSEYLLPLL---QQGLT--DGEEAVIVSALGSLSILIKLG--LLRK--PAVKDILQD 700 (1431)
T ss_pred hhccceEEEEeeee---------HHHHHHHHH---HHhcc--CcchhhHHHHHHHHHHHHHhc--ccch--HHHHHHHHh
Confidence 44443222111100 011122321 11122 222222222222222222211 1111 235677788
Q ss_pred HhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHH
Q 004389 321 LLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSL 383 (757)
Q Consensus 321 ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 383 (757)
.+-+..||+.-|+..++.|.+...+.+...+.|. ......+|++.+.+-.
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc-------------~l~P~irpfl~~~v~~ 750 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYC-------------KLMPLIRPFLERPVIQ 750 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHHHhhhhhhhheE-------------EeehhhHHhhhccHhh
Confidence 8888899999999999999887777665433332 2356677777655433
No 83
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.49 E-value=28 Score=40.28 Aligned_cols=189 Identities=9% Similarity=0.034 Sum_probs=111.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhC-CCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAA-SSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT 582 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~-~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~ 582 (757)
.+.+|..++.++. +|+.+. +........++.+.+..+.+.+ -|.-.|..++..+|+-..+.+.| .+.+.+.+
T Consensus 740 qvpik~~gL~~l~---~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~---dL~e~Y~s 813 (982)
T KOG4653|consen 740 QVPIKGYGLQMLR---HLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILP---DLSEEYLS 813 (982)
T ss_pred cccchHHHHHHHH---HHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHH---HHHHHHHh
Confidence 3567777777664 566532 1111356678888888886654 37788888888998875554433 33444433
Q ss_pred HhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhh
Q 004389 583 AVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (757)
Q Consensus 583 l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (757)
.-. +...+.+..+=|+|+.++.+.+ |-...|. .++++.....+.. + ....++..+..+|.+.+
T Consensus 814 ~k~-----k~~~d~~lkVGEai~k~~qa~G-el~~~y~----~~Li~tfl~gvre----p---d~~~RaSS~a~lg~Lcq 876 (982)
T KOG4653|consen 814 EKK-----KLQTDYRLKVGEAILKVAQALG-ELVFKYK----AVLINTFLSGVRE----P---DHEFRASSLANLGQLCQ 876 (982)
T ss_pred ccc-----CCCccceehHHHHHHHHHHHhc-cHHHHHH----HHHHHHHHHhcCC----c---hHHHHHhHHHHHHHHHH
Confidence 211 3336788889999999999865 2222333 3443333333321 1 12235556666666555
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004389 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGA 719 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 719 (757)
.... .+..++-++...+..+. .-.++.-++.++.-++..+.+..|.++.|++.-
T Consensus 877 ~~a~--~vsd~~~ev~~~Il~l~-~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~ 930 (982)
T KOG4653|consen 877 LLAF--QVSDFFHEVLQLILSLE-TTDGSVLVRRAAVHLLAELLNGTGEDLLPILRL 930 (982)
T ss_pred HHhh--hhhHHHHHHHHHHHHHH-ccCCchhhHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4431 11122223333222222 235667889999999999999999999997743
No 84
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.94 E-value=42 Score=33.98 Aligned_cols=236 Identities=10% Similarity=0.047 Sum_probs=133.4
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc--ccccHHHHHhhcC-CCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLP-KLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~-~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
+.++..++-++.+++.+-+.++.+ ....+..+++.+. ++.+|+.+..+ +..+.+..+.-.-.+ .....++..+
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~-l~gl~~L~~~~~~~~---~~~~~i~~~l 85 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPA-LKGLLALVKMKNFSP---ESAVKILRSL 85 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHH-HHHHHHHHhCcCCCh---hhHHHHHHHH
Confidence 467788899999999999888865 2334555666543 56555555444 444444332111112 2566777777
Q ss_pred HhccCCCh---HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 004389 541 TSGMSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (757)
Q Consensus 541 ~~~l~~~~---~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~ 617 (757)
++..+.+. ..|..+-.-+..+.+..+..+...-+.++..+.++..+. -++..-..+++-+-.++...+.
T Consensus 86 ~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gE----kDPRnLl~~F~l~~~i~~~~~~---- 157 (262)
T PF14500_consen 86 FQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGE----KDPRNLLLSFKLLKVILQEFDI---- 157 (262)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccC----CCHHHHHHHHHHHHHHHHhccc----
Confidence 76655432 466677777777777777777666667777777776653 2455556666666666666651
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCC---cccccCcchh--hHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCH
Q 004389 618 KALEMLCLPVVTPLQEIINQGPE---ILQKKHPRDL--TVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM 692 (757)
Q Consensus 618 ~~l~~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 692 (757)
.+..+.+-.++.-+=. .+..+.+-.+ ...-..+...+. .+| .+..-.+|.+..=+.. .++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~----s~~--~fa~~~~p~LleKL~s--~~~ 222 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS----STP--LFAPFAFPLLLEKLDS--TSP 222 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc----CcH--hhHHHHHHHHHHHHcC--CCc
Confidence 2333333333322110 0100011010 111122222221 122 2335567776443332 456
Q ss_pred HHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHH
Q 004389 693 RTMESLCRACKYAVRTSKRF-MGITIGAILEEIQG 726 (757)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~-~~p~l~~~~~~l~~ 726 (757)
.+...+...+..++..+|.. +.|+..++++.+-.
T Consensus 223 ~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~ 257 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYGADSLSPHWSTIWNALKF 257 (262)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 68888999999999999865 88999888887743
No 85
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.57 E-value=83 Score=36.17 Aligned_cols=148 Identities=14% Similarity=0.237 Sum_probs=74.9
Q ss_pred HHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCC
Q 004389 317 IVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQD 396 (757)
Q Consensus 317 ~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~ 396 (757)
++--+|.+.+.||.++++-++.+-..+...= .+.++++.+-+.+..-.+
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssr----------------------------Nvediv~~Lkke~~kT~~--- 366 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSR----------------------------NVEDIVQFLKKEVMKTHN--- 366 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhc----------------------------cHHHHHHHHHHHHHhccc---
Confidence 3334556778899999999999866655310 011222222222221111
Q ss_pred CChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHH
Q 004389 397 LSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFC 476 (757)
Q Consensus 397 ~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~ 476 (757)
++.++=+.||+- ....+.+|.-..+ + +-..+++.+-+.+. +.+-..--+.|..
T Consensus 367 ---~e~d~~~~yRql-----------------Liktih~cav~Fp-~-~aatvV~~ll~fis-----D~N~~aas~vl~F 419 (948)
T KOG1058|consen 367 ---EESDDNGKYRQL-----------------LIKTIHACAVKFP-E-VAATVVSLLLDFIS-----DSNEAAASDVLMF 419 (948)
T ss_pred ---cccccchHHHHH-----------------HHHHHHHHhhcCh-H-HHHHHHHHHHHHhc-----cCCHHHHHHHHHH
Confidence 122333467776 6667766654444 3 22223333333331 1121112223333
Q ss_pred HHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHH
Q 004389 477 IRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 523 (757)
Q Consensus 477 l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l 523 (757)
++.+-+..+.=....+..+++.++++. .+.+...++|.+|.|++-.
T Consensus 420 vrE~iek~p~Lr~~ii~~l~~~~~~ir-S~ki~rgalwi~GeYce~~ 465 (948)
T KOG1058|consen 420 VREAIEKFPNLRASIIEKLLETFPQIR-SSKICRGALWILGEYCEGL 465 (948)
T ss_pred HHHHHHhCchHHHHHHHHHHHhhhhhc-ccccchhHHHHHHHHHhhh
Confidence 343444443222344566666665543 5677888999999998744
No 86
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=84.26 E-value=78 Score=35.62 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l 583 (757)
+..||..++.-|..++ ..+|+ +++.+...|.+.|...+ .-...+-.||..+...-.+ ..+..++..+...
T Consensus 72 d~~iR~~aik~lp~~c---k~~~~---~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k---~tL~~lf~~i~~~ 142 (556)
T PF05918_consen 72 DVQIRKQAIKGLPQLC---KDNPE---HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK---GTLTGLFSQIESS 142 (556)
T ss_dssp SHHHHHHHHHHGGGG-----T--T----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHH--
T ss_pred cHHHHHHHHHhHHHHH---HhHHH---HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhc
Confidence 3556666666666555 33454 66777777666664432 2344444555554432221 1122333332211
Q ss_pred hhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH--HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHh
Q 004389 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK--KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIF 661 (757)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~--~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 661 (757)
-++ +...|+++++-|..-+..++.+.+. .-.+ .-++..+.+++..-. ...+..+-.++
T Consensus 143 ~~~------de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e---~~i~~~ikkvL~DVT-----------aeEF~l~m~lL 202 (556)
T PF05918_consen 143 KSG------DEQVRERALKFLREKLKPLKPELLTPQKEME---EFIVDEIKKVLQDVT-----------AEEFELFMSLL 202 (556)
T ss_dssp -HS-------HHHHHHHHHHHHHHGGGS-TTTS---HHHH---HHHHHHHHHHCTT-------------HHHHHHHHHHH
T ss_pred ccC------chHHHHHHHHHHHHHHhhCcHHHhhchHHHH---HHHHHHHHHHHHhcc-----------HHHHHHHHHHH
Confidence 011 2345666666666555555544433 2222 233334444443211 12344444455
Q ss_pred hhcCC---CcchHHHHHHHHHHHHHHHH---hc-CCCHHHHHHHHHHHHHHHHHh
Q 004389 662 RYVNH---PEAVADAIQRLWPIFKAIFD---IR-AWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 662 ~~~~~---~~~~~~~~~~~~~~l~~~l~---~~-~~~~~v~e~~~~~~~~~~~~~ 709 (757)
++++. ..+ .+-.+++.+++..... .| ..|++.+++...|+.+++-.+
T Consensus 203 ~~lk~~~~~~t-~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~f 256 (556)
T PF05918_consen 203 KSLKIYGGKQT-IEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFF 256 (556)
T ss_dssp HTSGG---GSS-HHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-
T ss_pred HhCccccccCC-hHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHh
Confidence 54432 112 2334556666654332 12 357888999999988876653
No 87
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=83.50 E-value=83 Score=35.39 Aligned_cols=249 Identities=17% Similarity=0.161 Sum_probs=132.9
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCc-----cccccHHHHHhhcCCCC
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV-----VEAEVMPQVMALLPKLP 503 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~-----~~~~~l~~l~~~l~~l~ 503 (757)
+.++|..|.....++...+...+.+...+. .++-.-++-++..++.+++.-.. .+.+.++.++..+..
T Consensus 58 ~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~-----h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~-- 130 (503)
T PF10508_consen 58 ICDILKRLLSALSPDSLLPQYQPFLQRGLT-----HPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD-- 130 (503)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC--
Confidence 556777776666656556666666665542 23335567777777766544322 124556666666532
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH-----HHHHHhccCC-ChHHHHHHHHHHHHHHHHhhhhhcCCHH--H
Q 004389 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV-----LSILTSGMST-SEDTAAAAALAFRHICDDCRKKLCGYLD--G 575 (757)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~-----l~~l~~~l~~-~~~v~~~Aa~al~~l~~~~~~~l~p~l~--~ 575 (757)
.+..|...++.++..++. ++. .+..+ +..+.+.+.. ...++.++...+.+++......+ .+.. .
T Consensus 131 ~d~~Va~~A~~~L~~l~~----~~~---~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sg 202 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLAS----HPE---GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSG 202 (503)
T ss_pred CcHHHHHHHHHHHHHHhC----Cch---hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhcc
Confidence 367888899998888765 222 22233 4444454554 33478887777777775543332 2222 2
Q ss_pred HHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcch-hhHHH
Q 004389 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRD-LTVHI 654 (757)
Q Consensus 576 ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~l 654 (757)
+++.+...+.+. +.-.+..++|-++.+... ..-..++.+ .-++..+.+.+.....++ ..... +-..+
T Consensus 203 ll~~ll~eL~~d-----DiLvqlnalell~~La~~---~~g~~yL~~--~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~ 270 (503)
T PF10508_consen 203 LLDLLLKELDSD-----DILVQLNALELLSELAET---PHGLQYLEQ--QGIFDKLSNLLQDSEEDP--RLSSLLLPGRM 270 (503)
T ss_pred HHHHHHHHhcCc-----cHHHHHHHHHHHHHHHcC---hhHHHHHHh--CCHHHHHHHHHhccccCC--cccchhhhhHH
Confidence 555555544431 123467788888777663 222345544 356666777776554332 01111 11233
Q ss_pred HHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 004389 655 DRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 655 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 708 (757)
...+.+... .|..+......+...+..+++ ..|+..++.+...++.+-.+
T Consensus 271 ~f~g~la~~--~~~~v~~~~p~~~~~l~~~~~--s~d~~~~~~A~dtlg~igst 320 (503)
T PF10508_consen 271 KFFGNLARV--SPQEVLELYPAFLERLFSMLE--SQDPTIREVAFDTLGQIGST 320 (503)
T ss_pred HHHHHHHhc--ChHHHHHHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHHhCC
Confidence 334444332 122232323333333333332 25777888888888876543
No 88
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=82.90 E-value=2.9 Score=36.11 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=43.2
Q ss_pred cHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHH-HHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhh
Q 004389 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA-SVLSILTSGMSTS-EDTAAAAALAFRHICDDCR 566 (757)
Q Consensus 491 ~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~-~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~~~ 566 (757)
.++.+++.+. +.++.++..++.+++.++........ ..+. .+++.+.+.+.++ .+++..|+.++.+++....
T Consensus 8 ~i~~l~~~l~--~~~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 8 GLPALVSLLS--SSDENVQREAAWALSNLSAGNNDNIQ--AVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred ChHHHHHHHH--cCCHHHHHHHHHHHHHHhcCCHHHHH--HHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 3555555553 23588999999999998753111000 0111 3333333334433 2499999999999997653
No 89
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=82.86 E-value=6.7 Score=36.43 Aligned_cols=77 Identities=12% Similarity=0.124 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 004389 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (757)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~ 585 (757)
--+|+++.+++...-+-...+- -+..++..+..|+.+..+++.-+..-+.+++..+...+.+.++.+.+.+...++
T Consensus 41 LelRK~ayE~lytlLd~~~~~~----~~~~~~~~v~~GL~D~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRI----DISEFLDRVEAGLKDEHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-----HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHhh
Confidence 3699999999987655222221 467778889999998667999999999999999999999999999999999887
Q ss_pred C
Q 004389 586 G 586 (757)
Q Consensus 586 ~ 586 (757)
.
T Consensus 117 ~ 117 (169)
T PF08623_consen 117 K 117 (169)
T ss_dssp -
T ss_pred c
Confidence 4
No 90
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=82.41 E-value=15 Score=34.84 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD 564 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~ 564 (757)
||.+|.+++.++|.++ .++|. ++.+.++.+..+|.++. .|+..|...+.++...
T Consensus 1 ~~~vR~n~i~~l~DL~---~r~~~---~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~ 55 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLC---IRYPN---LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE 55 (178)
T ss_pred CHHHHHHHHHHHHHHH---HhCcH---HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc
Confidence 6889999999998765 44564 78888888889998865 4999999999998764
No 91
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=82.08 E-value=96 Score=35.08 Aligned_cols=215 Identities=10% Similarity=0.070 Sum_probs=99.2
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHHhhhhh-cCCHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDDCRKKL-CGYLDGLYNVYRT 582 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~Aa~al~~l~~~~~~~l-~p~l~~ll~~~~~ 582 (757)
.+.+....+.-+.+...++..+|. ++..++..+..-=.. ...++..|-..+..+|....+.+ .|.+- +.+..
T Consensus 255 ~te~~~~~L~~l~~l~~~~~~f~k---~lk~liK~~V~vWstge~~~rv~Afl~l~~l~~~~~~~~l~~vlk---~mY~a 328 (661)
T KOG2256|consen 255 DTEVLAFTLRHLTVLVPFLATFPK---LLKKLIKAVVHVWSTGEESLRVLAFLCLIDLCRKFKSTCLDPVLK---TMYLA 328 (661)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHheeeccCCcchhhHHHHHHHHHHHHhhhHHHHHHHH---HHHHH
Confidence 455555566666677777777664 555655555432111 22388888888888987655433 23222 22222
Q ss_pred HhhCcCCCCCChhhHH-HHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCccccc-CcchhhHHHHHHHHH
Q 004389 583 AVNGEGSLKVSAEDSL-HLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HPRDLTVHIDRFAYI 660 (757)
Q Consensus 583 l~~~~~~~~l~~~~~~-~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~l~~~ 660 (757)
.+.+..-.+....... .+-.++.- +..+.......+.-.++.++.--|++.+....+..-.. ..=+.+.+++....+
T Consensus 329 fv~nsk~~~~~tl~~i~Fl~~slvE-L~~ld~~~~Yq~aF~yIrQLAihLRnam~~k~K~s~~~VYnWqfi~cL~lW~rv 407 (661)
T KOG2256|consen 329 FVRNSKFVTVNTLPLINFLQNSLVE-LLGLDLQVSYQHAFVYIRQLAIHLRNAMITKNKESVQSVYNWQYVHCLDLWLRV 407 (661)
T ss_pred HHHhCCCCCCcccchhHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221100011111122 22222222 12233333333333445555555666665443211100 011234566666655
Q ss_pred hh-hcCCCcchHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 004389 661 FR-YVNHPEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGL 727 (757)
Q Consensus 661 ~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~ 727 (757)
+. ..+...++.++.--+.+++..+....+ ....++=.+++.+-++.+..|. +.|..|-+++.+-..
T Consensus 408 isf~~~~~s~lq~LvYpLvQvi~GvirLipT~qy~PLRlhcir~Li~Ls~ssg~-fIPi~~ll~Eml~~~ 476 (661)
T KOG2256|consen 408 ISFANGSASQLQPLVYPLVQVILGVIRLIPTPQYYPLRLHCIRSLISLSRSSGT-FIPLSPLLVEMLKSV 476 (661)
T ss_pred HHHhhccHhhhhhhhhHHHHHHHHHhhhcCcccchhHHHHHHHHHHHHHhhcCc-eeecHHHHHHHHHHh
Confidence 55 322222222222222222222222222 2355666666666666666554 557777777777443
No 92
>PRK09687 putative lyase; Provisional
Probab=80.92 E-value=70 Score=32.77 Aligned_cols=209 Identities=15% Similarity=0.063 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~ 86 (757)
+...+..| .++|...|..|-..|.++. .++++..+..++.+ .++.+|.+|+..|-..-... .-..+....|+..
T Consensus 25 ~~~L~~~L-~d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~--~d~~vR~~A~~aLg~lg~~~--~~~~~a~~~L~~l 98 (280)
T PRK09687 25 DDELFRLL-DDHNSLKRISSIRVLQLRG-GQDVFRLAIELCSS--KNPIERDIGADILSQLGMAK--RCQDNVFNILNNL 98 (280)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhC--CCHHHHHHHHHHHHhcCCCc--cchHHHHHHHHHH
Confidence 34445555 6779999999999998765 78888999888864 57899999999998743221 1123333333332
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc-CCccchHHHHHhcCCC-CCchhHHHHHhhhchhh---------c
Q 004389 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDW-GGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEE---------V 155 (757)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W-~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~ee---------~ 155 (757)
+.. .....||...+.+|+.+..... .| +. .+..+...+... +........-|..+..+ +
T Consensus 99 ----~~~--D~d~~VR~~A~~aLG~~~~~~~--~~~~~--a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L 168 (280)
T PRK09687 99 ----ALE--DKSACVRASAINATGHRCKKNP--LYSPK--IVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL 168 (280)
T ss_pred ----Hhc--CCCHHHHHHHHHHHhccccccc--ccchH--HHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Confidence 222 2346677777777777643322 23 22 333333322211 11111222222211110 0
Q ss_pred ccccccCChHHHHHHHHHHHH---hHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhcc
Q 004389 156 FNYKIAARPERRRQFEKELTS---QMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL 230 (757)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~---~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L 230 (757)
.+. ...-|..--..|.. ..+.+.+.|...+.++ +++..+...+... + ....++.+++.|
T Consensus 169 ~d~----~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~---~---------~~~av~~Li~~L 232 (280)
T PRK09687 169 KDP----NGDVRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALR---K---------DKRVLSVLIKEL 232 (280)
T ss_pred cCC----CHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHcc---C---------ChhHHHHHHHHH
Confidence 000 11223332233322 2455666666666553 5666666666531 1 124555666667
Q ss_pred CCcchHHHHHHHHHHHh
Q 004389 231 HSEILSEASVNVISELI 247 (757)
Q Consensus 231 ~~~~~~~~a~~~l~~ii 247 (757)
.++.++..+++.+.++-
T Consensus 233 ~~~~~~~~a~~ALg~ig 249 (280)
T PRK09687 233 KKGTVGDLIIEAAGELG 249 (280)
T ss_pred cCCchHHHHHHHHHhcC
Confidence 77666665555555443
No 93
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=80.76 E-value=14 Score=29.76 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 004389 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (757)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~L 87 (757)
...++.+-.++|+..|..|-..|.++. ++++-.....++. +.++.+|..|+..|.+. .. ......|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i--------~~---~~~~~~L 67 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG-DPEAIPALIELLK--DEDPMVRRAAARALGRI--------GD---PEAIPAL 67 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT-HHHHHHHHHHHHT--SSSHHHHHHHHHHHHCC--------HH---HHTHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHc--CCCHHHHHHHHHHHHHh--------CC---HHHHHHH
Confidence 445666657889999999999998774 7788888888885 46789999999999843 11 1122333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHH
Q 004389 88 NTLLKKFHKGPPKVRTQISIAVA 110 (757)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~la 110 (757)
.+.+.. .....||.....+|+
T Consensus 68 ~~~l~~--~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 68 IKLLQD--DDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHcC--CCcHHHHHHHHhhcC
Confidence 333333 124566777666654
No 94
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=79.93 E-value=17 Score=30.04 Aligned_cols=75 Identities=11% Similarity=0.149 Sum_probs=53.3
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH
Q 004389 542 SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL 620 (757)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l 620 (757)
..+++|. +++.++-..++++++... .-...++.++..+...+..+ +.......+.+++.++...|.+.+...+
T Consensus 10 ~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~-----DsyVYL~aI~~L~~La~~~p~~vl~~L~ 83 (92)
T PF10363_consen 10 SDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE-----DSYVYLNAIKGLAALADRHPDEVLPILL 83 (92)
T ss_pred HHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHHHHChHHHHHHHH
Confidence 3345553 499999999999998755 23356788888888887653 3456788999999998888755544444
Q ss_pred HH
Q 004389 621 EM 622 (757)
Q Consensus 621 ~~ 622 (757)
..
T Consensus 84 ~~ 85 (92)
T PF10363_consen 84 DE 85 (92)
T ss_pred HH
Confidence 33
No 95
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=79.57 E-value=36 Score=34.88 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh--hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHh
Q 004389 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK--KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~--~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (757)
..-.+|..|++++.++..+|...-.++..+|..|+. .+.|.+..+=+.+.+ ++++.+++..++.++..++.
T Consensus 104 l~L~vLsnLfn~~d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lke-------w~~~vedqrel~r~v~~al~ 176 (378)
T KOG2753|consen 104 LRLQVLSNLFNGVDKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKE-------WNISVEDQRELLRAVHKALK 176 (378)
T ss_pred cHHHHHHHHHhccCCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 566788888899988876888889999999999874 566777766665543 35788999999999998877
Q ss_pred cC
Q 004389 610 EL 611 (757)
Q Consensus 610 ~~ 611 (757)
.-
T Consensus 177 ~~ 178 (378)
T KOG2753|consen 177 DN 178 (378)
T ss_pred hc
Confidence 64
No 96
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=78.57 E-value=33 Score=41.33 Aligned_cols=55 Identities=20% Similarity=0.155 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICD 563 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~ 563 (757)
.+..+..+++++..++.++...- .|..++++++..+.++. +|+..|-.++.++..
T Consensus 436 ~~~tK~~ALeLl~~lS~~i~de~----~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~ 491 (1431)
T KOG1240|consen 436 TIQTKLAALELLQELSTYIDDEV----KLDRVLPYFVHLLMDSEADVRATALETLTELLA 491 (1431)
T ss_pred cchhHHHHHHHHHHHhhhcchHH----HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHh
Confidence 46678899999999999997653 79999999999998876 466665555554443
No 97
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=77.14 E-value=7.5 Score=31.45 Aligned_cols=56 Identities=25% Similarity=0.181 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHH
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTL 64 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L 64 (757)
+...+..+..++|+..|.+|-..|..+. +++++.....++.+ +.+..+|..|+..|
T Consensus 32 ~~~~L~~~l~d~~~~vr~~a~~aL~~i~-~~~~~~~L~~~l~~-~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 32 AIPALIELLKDEDPMVRRAAARALGRIG-DPEAIPALIKLLQD-DDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCH-HHHTHHHHHHHHTC--SSHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHHcC-CCcHHHHHHHHhhc
Confidence 3444444447889999999999999986 68899999999986 45667888888765
No 98
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=76.10 E-value=1e+02 Score=32.54 Aligned_cols=180 Identities=11% Similarity=0.086 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH----
Q 004389 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYR---- 581 (757)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~---- 581 (757)
.-++-+..+|++|-.+| |+ +-..++..=+....+.+ .++..|.+-|-.||++ ...+-+.+.+..+.
T Consensus 39 k~k~lasq~ip~~fk~f---p~---la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~---d~~~rv~d~l~qLLnk~s 109 (460)
T KOG2213|consen 39 KEKRLASQFIPRFFKHF---PS---LADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG---DALSRVNDVLVQLLNKAS 109 (460)
T ss_pred HHHHHHHHHHHHHHhhC---ch---hhhHHHHhhhccccccchhhHHHHHhccchhccC---chhhhhHHHHHHHHHHHH
Confidence 34445556666654444 54 55666666555555543 4899999999999986 22233333332222
Q ss_pred --HHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHH
Q 004389 582 --TAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (757)
Q Consensus 582 --~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (757)
.+++. ....+...|++++.-|..=+-.++.|.+.+-++. .+++.+.+.+..-. ......+++.++.
T Consensus 110 l~~Lf~~--~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~---~iv~eikkal~dVt-------geef~lfm~~L~~ 177 (460)
T KOG2213|consen 110 LTGLFGQ--IEVGDEQIREKVLKFIRTKLITLKGEVLTKEVER---HIVDEIKKALEDVT-------GEEFTLFMDILAS 177 (460)
T ss_pred HHHHHhh--hhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHH---HHHHHHHHHHHhcc-------HHHHHHHHHHHHh
Confidence 22221 1122455677777777666666776665533332 34444445544221 1133344455543
Q ss_pred HhhhcCCCcchHHHHHHHHHHHHHHHHh--cC-CCHHHHHHHHHHHHHHHHHh
Q 004389 660 IFRYVNHPEAVADAIQRLWPIFKAIFDI--RA-WDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~-~~~~v~e~~~~~~~~~~~~~ 709 (757)
+ ++++.-.+ ..-++.+....+..-.. |. +|++.+++...|+..++-.+
T Consensus 178 l-k~~~~k~~-~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfF 228 (460)
T KOG2213|consen 178 L-KSLQTKAG-EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFF 228 (460)
T ss_pred h-hcccCCCC-HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhh
Confidence 3 22321111 11223333333332111 33 57888999988888776644
No 99
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=75.74 E-value=6.8 Score=24.73 Aligned_cols=30 Identities=10% Similarity=0.082 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 004389 677 LWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 677 ~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 708 (757)
++|.+.+.++. .+++|++.++.+++.+.+.
T Consensus 1 llp~l~~~l~D--~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLND--PSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT---SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC--CCHHHHHHHHHHHHHHHhh
Confidence 46777777765 5799999999999988764
No 100
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=75.55 E-value=1.3e+02 Score=32.89 Aligned_cols=94 Identities=11% Similarity=0.146 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHh
Q 004389 652 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY--AVRTSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
..++-+..++..++ |..+..+...++..+...++. .+..|.|+++.++.. ++.....+....+|.+++.+...-+
T Consensus 274 ~FL~el~~il~~~~-~~~f~~i~~~lf~~la~ci~S--~h~qVAErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~ 350 (409)
T PF01603_consen 274 LFLNELEEILEVLP-PEEFQKIMVPLFKRLAKCISS--PHFQVAERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSK 350 (409)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHHHHTS--SSHHHHHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 45677777777654 455667777777777777654 578999999888765 2444555555566666666555444
Q ss_pred hcCCcchHhhHHHHHHHhC
Q 004389 730 QHQQPCFLYLSSEVIKVVF 748 (757)
Q Consensus 730 ~~~~~~~l~~~~~~i~~f~ 748 (757)
.|=....-.++..+...+.
T Consensus 351 ~HWn~~Vr~~a~~vl~~l~ 369 (409)
T PF01603_consen 351 NHWNQTVRNLAQNVLKILM 369 (409)
T ss_dssp S-SSTTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHH
Confidence 4434455555555555543
No 101
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.78 E-value=1.7e+02 Score=34.00 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHH-HhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc--CChHHHHHHHHHhhh
Q 004389 549 DTAAAAALAFRHICD-DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE--LPQVDAKKALEMLCL 625 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~-~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~--~~~e~~~~~l~~l~~ 625 (757)
..+++.+.-+..-.. .|..++.| -+...+.++++..+ +--.+.....++..++.- +..+...+++..+..
T Consensus 502 iiRRRVa~ilg~Wvsvq~~~e~k~---l~Y~a~lnLL~d~~----D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~ 574 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQKLELKP---LLYCAFLNLLQDQN----DLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFV 574 (978)
T ss_pred HHHHHHHHHHhhhhheechHhHHH---HHHHHHHHhcCccc----cceeehHHHHHHHHhhhhccCChhhhhhhHHHHHH
Confidence 477777776665543 23333332 34456666664321 112345556666666554 333445566555544
Q ss_pred hHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004389 626 PVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (757)
Q Consensus 626 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 705 (757)
.++ +++..... .......++.+|.++..++. -+.|...++...+-.+=+.....+-++-++...+++.
T Consensus 575 ~lf----kll~~~~e------~Dtk~~VL~~ls~lI~r~~e--~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~l 642 (978)
T KOG1993|consen 575 LLF----KLLKAVEE------CDTKTSVLNLLSTLIERVSE--HIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNL 642 (978)
T ss_pred HHH----HHHHHHhh------hhhHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHH
Confidence 444 44443221 12345778999999887752 3335556666655555555556677888999999999
Q ss_pred HHHhhhhhhhhHHHHHHHH
Q 004389 706 VRTSKRFMGITIGAILEEI 724 (757)
Q Consensus 706 ~~~~~~~~~p~l~~~~~~l 724 (757)
+.++|....++-|-+.+.+
T Consensus 643 V~alg~qS~~~~~fL~pVI 661 (978)
T KOG1993|consen 643 VNALGAQSFEFYPFLYPVI 661 (978)
T ss_pred HHHhccCCccchHHHHHHH
Confidence 9999987555544444444
No 102
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=73.94 E-value=87 Score=30.16 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=37.8
Q ss_pred HHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 004389 560 HICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (757)
Q Consensus 560 ~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~ 618 (757)
.+.+.++..-.|++..++..+.++-.+. +.+-+..+=+++|+.+.+++++....
T Consensus 26 ~lf~~lg~~~~~~l~~~L~~l~~lr~~~-----~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 26 ALFEKLGERSSPLLKPILKTLGDLRESE-----DFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHcCC-----CcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 3444455555577777888887776542 24567888889999999999887654
No 103
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=72.19 E-value=43 Score=35.84 Aligned_cols=81 Identities=14% Similarity=0.185 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHhhhcCC---CcchHHHHHHHHHHHHHHHHhcCC--------C----HHHHHHHHHHHHHHHHHhhhhhh
Q 004389 650 LTVHIDRFAYIFRYVNH---PEAVADAIQRLWPIFKAIFDIRAW--------D----MRTMESLCRACKYAVRTSKRFMG 714 (757)
Q Consensus 650 ~~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~--------~----~~v~e~~~~~~~~~~~~~~~~~~ 714 (757)
....+..+.++|-++.. |+-+.+-+...|..+..+++.-.. . ..+.-.+|..+..-..-+++.+.
T Consensus 53 ~~~~l~lilKiF~sL~~~DLPe~fed~l~~wm~~f~~~L~~~~p~l~~~d~~e~~~l~kvK~~i~~~~~ly~~kY~e~f~ 132 (370)
T PF08506_consen 53 LFEMLKLILKIFYSLNCQDLPEFFEDNLSEWMEIFHKYLTYPNPALEEDDDDEPGLLEKVKAWICENLNLYAEKYEEEFE 132 (370)
T ss_dssp HHHHHHHHHHHHHHHHSSS--HHHHHTHHHHHHHHHHHHH--SGGG-TT-SSS--HHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHccCcCcHHHHHHHHHHHHHHHHHHcCCCcccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888887753 443444455666666666644210 1 34556688888888888999999
Q ss_pred hhHHHHHHHHHHHHhh
Q 004389 715 ITIGAILEEIQGLYQQ 730 (757)
Q Consensus 715 p~l~~~~~~l~~~~~~ 730 (757)
||+|.+++.+.+...+
T Consensus 133 ~~l~~fv~~vw~lL~~ 148 (370)
T PF08506_consen 133 PFLPTFVQAVWNLLTK 148 (370)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877654
No 104
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=70.82 E-value=69 Score=37.65 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=55.0
Q ss_pred hHHHHHHHHhhcccCcc---ccccHHHHHhhcCCCC---C-h-HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 004389 471 EAALFCIRAISTYVSVV---EAEVMPQVMALLPKLP---Q-Q-PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (757)
Q Consensus 471 Ea~l~~l~~ia~~~~~~---~~~~l~~l~~~l~~l~---~-~-~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~ 542 (757)
++-+..+..+.....+. ..+.+..+++.+..++ + + ..||.+++.+++...+++... ..+.+-+.|+..+.+
T Consensus 924 ~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~-~l~~fr~~Vl~al~k 1002 (1030)
T KOG1967|consen 924 IVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTK-SLLSFRPLVLRALIK 1002 (1030)
T ss_pred chhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCc-ccccccHHHHHHhhh
Confidence 33334444444433332 2355677777655443 2 2 689999999999999877642 122377899999999
Q ss_pred ccCCChH-HHHHHHH
Q 004389 543 GMSTSED-TAAAAAL 556 (757)
Q Consensus 543 ~l~~~~~-v~~~Aa~ 556 (757)
.++||++ ||..|..
T Consensus 1003 ~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 1003 ILDDKKRLVRKEAVD 1017 (1030)
T ss_pred ccCcHHHHHHHHHHH
Confidence 9999874 5555543
No 105
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.66 E-value=2.3e+02 Score=33.30 Aligned_cols=153 Identities=13% Similarity=0.182 Sum_probs=83.4
Q ss_pred HHHHHHHhhcccCccccccHHHHHhhc-C--CCC---ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC
Q 004389 473 ALFCIRAISTYVSVVEAEVMPQVMALL-P--KLP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (757)
Q Consensus 473 ~l~~l~~ia~~~~~~~~~~l~~l~~~l-~--~l~---~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~ 546 (757)
.|-++..+..-|....+..+|.+...- . +.+ .--+|-.+.+.++-+.++-.. .|...+++.+++|+++
T Consensus 785 yLnaI~gv~~Lcevy~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~------~y~~~Li~tfl~gvre 858 (982)
T KOG4653|consen 785 YLNAIRGVVSLCEVYPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVF------KYKAVLINTFLSGVRE 858 (982)
T ss_pred eHHHHHHHHHHHHhcchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHH------HHHHHHHHHHHHhcCC
Confidence 444555444333334455666666632 1 111 123455555555555444443 3677888999999998
Q ss_pred Ch-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004389 547 SE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCL 625 (757)
Q Consensus 547 ~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~ 625 (757)
|+ ..+..+...+..+|+..+-.+..++-+....+..+..+.+ +.-.|...+.-+......++ +...+.+..++-
T Consensus 859 pd~~~RaSS~a~lg~Lcq~~a~~vsd~~~ev~~~Il~l~~~d~----s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~ 933 (982)
T KOG4653|consen 859 PDHEFRASSLANLGQLCQLLAFQVSDFFHEVLQLILSLETTDG----SVLVRRAAVHLLAELLNGTG-EDLLPILRLLLI 933 (982)
T ss_pred chHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHccCC----chhhHHHHHHHHHHHHhccc-hhhHHHHHHHHH
Confidence 86 3677888889999988776555555555555555554322 22345555555655566554 233333333333
Q ss_pred hHHHHHHHHHh
Q 004389 626 PVVTPLQEIIN 636 (757)
Q Consensus 626 ~~~~~l~~~~~ 636 (757)
.....+.+.+.
T Consensus 934 Dl~~tl~~~vr 944 (982)
T KOG4653|consen 934 DLDETLLSYVR 944 (982)
T ss_pred HHHHHHHHHHh
Confidence 33333444443
No 106
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.41 E-value=2.4e+02 Score=33.32 Aligned_cols=147 Identities=11% Similarity=0.193 Sum_probs=81.3
Q ss_pred CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh-ccC--CChHHHHHHHHHHHHHHHHhhh---hhcCCHHHH
Q 004389 503 PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS-GMS--TSEDTAAAAALAFRHICDDCRK---KLCGYLDGL 576 (757)
Q Consensus 503 ~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~-~l~--~~~~v~~~Aa~al~~l~~~~~~---~l~p~l~~l 576 (757)
|.|-....+++..+-.+++++..+.. ..+++.+....+ .+. +|. +..-+...+..+|.-..+ .|.|+++-+
T Consensus 478 p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~asik~S~~n~q-l~~Tss~~igs~s~~l~e~P~~ln~sl~~L 554 (982)
T KOG2022|consen 478 PDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSASIKLSAPNPQ-LLSTSSDLIGSLSNWLGEHPMYLNPSLPLL 554 (982)
T ss_pred chHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccccccccCChh-HHHHHHHHHHHHHHHHhcCCcccCchHHHH
Confidence 44667778888888888888875533 367777766542 122 344 666677777777765544 345777777
Q ss_pred HHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHH
Q 004389 577 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDR 656 (757)
Q Consensus 577 l~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 656 (757)
++.+.+ .+.....+.++-.+... .+..+.....+++.-....++.... -...+...+..
T Consensus 555 ~~~Lh~-----------sk~s~q~i~tl~tlC~~-----C~~~L~py~d~~~a~~~e~l~~~~~-----~~S~~~klm~s 613 (982)
T KOG2022|consen 555 FQGLHN-----------SKESEQAISTLKTLCET-----CPESLDPYADQFSAVCYEVLNKSNA-----KDSDRLKLMKS 613 (982)
T ss_pred HHHhcC-----------chHHHHHHHHHHHHHHh-----hhhhCchHHHHHHHHHHHHhccccc-----CchHHHHHHHH
Confidence 666542 11122233333333222 2233333344444444555543221 12345567789
Q ss_pred HHHHhhhcCCCcchHHHH
Q 004389 657 FAYIFRYVNHPEAVADAI 674 (757)
Q Consensus 657 l~~~~~~~~~~~~~~~~~ 674 (757)
||.+.+.++ |+-....+
T Consensus 614 IGyvls~~~-pEe~~kyl 630 (982)
T KOG2022|consen 614 IGYVLSRLK-PEEIPKYL 630 (982)
T ss_pred HHHHHHhcc-HHhHHHHH
Confidence 999988887 44444443
No 107
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=69.33 E-value=46 Score=36.80 Aligned_cols=117 Identities=9% Similarity=0.101 Sum_probs=73.1
Q ss_pred hhhHHHhhhhhcCh--hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc--cccHHHHHhhcCCCCC
Q 004389 429 VADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQ 504 (757)
Q Consensus 429 ~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~--~~~l~~l~~~l~~l~~ 504 (757)
+.|.+.++..-.+. +..+..+. +.+ .+.+.-+-++..++-+++..+... ..++..+.+.+. -.
T Consensus 433 ~Vdaisd~~~~~p~skEraLe~LC----~fI-------EDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~i--LE 499 (898)
T COG5240 433 MVDAISDAMENDPDSKERALEVLC----TFI-------EDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLI--LE 499 (898)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHH----HHH-------hhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHH--Hh
Confidence 55666665555542 23333333 332 223444677788888887776543 345666665432 13
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHIC 562 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~ 562 (757)
+..||.++..++++|+-- ...+- .-..+...+-+++.+.+ .|+.+|+.+++.+=
T Consensus 500 N~ivRsaAv~aLskf~ln-~~d~~---~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 500 NNIVRSAAVQALSKFALN-ISDVV---SPQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred hhHHHHHHHHHHHHhccC-ccccc---cHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 688999999999988632 22332 44567777788887754 59999999998763
No 108
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.15 E-value=85 Score=36.26 Aligned_cols=167 Identities=17% Similarity=0.216 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHH
Q 004389 52 SNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLR 131 (757)
Q Consensus 52 ~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~ 131 (757)
.++.|-..+|+.+. +--|..+-..+-+.|+.+|.. ++.++.-+-+.|+.+..+.+. - |.+.+-
T Consensus 299 ~n~sVVmA~aql~y-------~lAP~~~~~~i~kaLvrLLrs----~~~vqyvvL~nIa~~s~~~~~-l-----F~P~lK 361 (968)
T KOG1060|consen 299 RNPSVVMAVAQLFY-------HLAPKNQVTKIAKALVRLLRS----NREVQYVVLQNIATISIKRPT-L-----FEPHLK 361 (968)
T ss_pred CCcHHHHHHHhHHH-------hhCCHHHHHHHHHHHHHHHhc----CCcchhhhHHHHHHHHhcchh-h-----hhhhhh
Confidence 45667777777765 344555666666777776654 445555566677887775432 1 222221
Q ss_pred Hh--cCCCCCch-hHHHHHhhhchhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHh
Q 004389 132 DE--MNSHPEFV-PGFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWL 206 (757)
Q Consensus 132 ~~--~~~~~~~~-~~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi 206 (757)
.. .+++|.++ ..-|++|+.|..|- +...|+.-+..+..++ ++...++++++..-
T Consensus 362 sFfv~ssDp~~vk~lKleiLs~La~es---------------------ni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA 420 (968)
T KOG1060|consen 362 SFFVRSSDPTQVKILKLEILSNLANES---------------------NISEILRELQTYIKSSDRSFAAAAVKAIGRCA 420 (968)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHhhhc---------------------cHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 11 23445444 34588888887663 3344555555555544 35555566655433
Q ss_pred hccCCCCCcccccchhHHHHHhccCC--cchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHH
Q 004389 207 RLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIV 269 (757)
Q Consensus 207 ~~~~~~~~~~l~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~ 269 (757)
.....+ ....++.++..+.+ +-+..+|+.++..+++... .+|.+++..++
T Consensus 421 ~~~~sv------~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p-------~~h~~ii~~La 472 (968)
T KOG1060|consen 421 SRIGSV------TDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP-------AEHLEILFQLA 472 (968)
T ss_pred HhhCch------hhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh-------HHHHHHHHHHH
Confidence 321011 23455556666553 3455677888888887543 35655554433
No 109
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.30 E-value=2.6e+02 Score=33.36 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhh-----hhHHHHHHHH
Q 004389 651 TVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMG-----ITIGAILEEI 724 (757)
Q Consensus 651 ~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~-----p~l~~~~~~l 724 (757)
...++.++.++.-+.. ++-+.|.+.+.||.+...+.. +|+-+++++|.++..+..-+|+++. .++|.+-..+
T Consensus 821 vkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~--k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~ 898 (1014)
T KOG4524|consen 821 VKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLC--KDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLC 898 (1014)
T ss_pred HHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhc--CchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4566777766655554 345789999999988766644 5788899999999999888887644 4445444344
Q ss_pred HHHH
Q 004389 725 QGLY 728 (757)
Q Consensus 725 ~~~~ 728 (757)
...+
T Consensus 899 ~~~~ 902 (1014)
T KOG4524|consen 899 QDSF 902 (1014)
T ss_pred HHHH
Confidence 4443
No 110
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=67.80 E-value=68 Score=29.70 Aligned_cols=72 Identities=13% Similarity=0.128 Sum_probs=50.6
Q ss_pred HHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 534 ASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
.-+++.+.+-++++. .....+..|+..+.+..+..-.||++.++..+.+.+.+ .+...++.++.-++.++..
T Consensus 85 ~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~-----~~~~~~e~~~~qL~~lv~i 158 (160)
T PF11865_consen 85 TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRT-----CPDSLREFYFQQLADLVSI 158 (160)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHh-----CCHHHHHHHHHHHHHHHHH
Confidence 345566666667764 35557788888888766555679999999888888874 2346677788777776654
No 111
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=67.36 E-value=1.5e+02 Score=30.73 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=21.6
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 004389 685 FDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (757)
Q Consensus 685 l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~ 732 (757)
+..|+-+.+=.....+++.++++.... ...-..++..++..|....
T Consensus 154 lkew~~~vedqrel~r~v~~al~~~k~--~~~s~kvmt~lLgtyt~dn 199 (378)
T KOG2753|consen 154 LKEWNISVEDQRELLRAVHKALKDNKS--VDESSKVMTELLGTYTEDN 199 (378)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhcch--hhhHHHHHHHHHHHhcccc
Confidence 344444444445556666665554442 2222334444455554433
No 112
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.49 E-value=4.9e+02 Score=36.20 Aligned_cols=252 Identities=10% Similarity=0.070 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCC---h---HHHHHHHH
Q 004389 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQ---Q---PQLLQTVC 513 (757)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~---~---~~l~~t~~ 513 (757)
+.+.+.+.+-+.+ . +..|..+.+.+.++.++.+..+... .+.+..++..+...+. . ...+....
T Consensus 1030 i~~~l~~k~~~lC----y-~~~wy~k~gG~~gI~~l~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~ 1104 (3550)
T KOG0889|consen 1030 MFEYLLEKLCHLC----Y-DSTWYAKDGGVNGIKCLIESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILM 1104 (3550)
T ss_pred hHHHHHHHHHHHh----c-cHhHHHHcCCCceeeeehhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHH
Confidence 4444555444433 1 4679999999999999888877321 1334445555544432 1 12333333
Q ss_pred HHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCc----C
Q 004389 514 LTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGE----G 588 (757)
Q Consensus 514 ~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~----~ 588 (757)
.++..+........+.......++..+...+.+|+ .|+..+-.++..+.+.. .+-+..++..+.+++..+ .
T Consensus 1105 ~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR~~~~~~L~~i~~~s----~~~v~~L~~p~K~~ll~p~f~k~ 1180 (3550)
T KOG0889|consen 1105 DILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVREFSQKLLRLISELS----GKSVVKLLEPFKDVLLSPIFKKP 1180 (3550)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhccccccc
Confidence 33333333222111111356677777888887776 58888888888777665 344455555555555211 0
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCh----HHHHHHHHHhhhhHHH----HHHHHHhcCCCcccccCcchhhHHHHHHHHH
Q 004389 589 SLKVSAEDSLHLVEALSMVITELPQ----VDAKKALEMLCLPVVT----PLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (757)
Q Consensus 589 ~~~l~~~~~~~l~eai~~vi~~~~~----e~~~~~l~~l~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 660 (757)
-..++...+...++|+...+.--|. ++....+.....-+.. ..-.+................+.+++.+++.
T Consensus 1181 lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~ 1260 (3550)
T KOG0889|consen 1181 LRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAAC 1260 (3550)
T ss_pred cccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhhhhcccccccccccccchhHHHHHHHHH
Confidence 1134567778888888776665331 1222222222222221 1111111111111111233456788888877
Q ss_pred hhhcCCCc-chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 004389 661 FRYVNHPE-AVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVR 707 (757)
Q Consensus 661 ~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 707 (757)
....+... -..+.-.+++-++...+ ++..+++++.+..++++...
T Consensus 1261 ~~~~d~~~~~~~~~r~kii~v~fk~l--~~~~~Ei~~~~~~~l~~v~~ 1306 (3550)
T KOG0889|consen 1261 MKLSDFRTPQHAELREKIIAVFFKSL--YKRSSELIEVALEGLRKVLA 1306 (3550)
T ss_pred HhcccccchhhhhhhhHHHHHHHHHH--cCChHHHHHHHHHHHHhhhh
Confidence 66543211 12344556666665555 34667888888887777554
No 113
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=65.56 E-value=1.2e+02 Score=28.28 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchh
Q 004389 571 GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL 650 (757)
Q Consensus 571 p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 650 (757)
..++.+...+.+++++. +.+.|-.-+.-++.++..-+.| .+.+-..+.+..+.+++++.. .....
T Consensus 21 ~~l~~l~~ri~~LL~s~-----~~~~rw~G~~Ll~~~~~~~~~e----~l~~~~~~W~~~Ll~~L~~~~------~~~~~ 85 (165)
T PF08167_consen 21 SALHKLVTRINSLLQSK-----SAYSRWAGLCLLKVTVEQCSWE----ILLSHGSQWLRALLSILEKPD------PPSVL 85 (165)
T ss_pred HHHHHHHHHHHHHhCCC-----ChhhHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHcCCC------CHHHH
Confidence 35566777777777642 1333433333333334433333 344445566666666666522 22233
Q ss_pred hHHHHHHHHHhhhcCC-C----cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 004389 651 TVHIDRFAYIFRYVNH-P----EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ 725 (757)
Q Consensus 651 ~~~l~~l~~~~~~~~~-~----~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 725 (757)
..++..++.+|..... | +...+.+..+.+.+..+++. ....+.++.++..++.....-+.|+-.++=..+.
T Consensus 86 ~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~~~ptt~rp~~~ki~~~l~ 161 (165)
T PF08167_consen 86 EAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLPHHPTTFRPFANKIESALL 161 (165)
T ss_pred HHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHCCccccchHHHHHHHHH
Confidence 4567778877776653 2 22233444555555554443 5677888999999999888888888777655544
No 114
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=65.34 E-value=2.1e+02 Score=31.16 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHH
Q 004389 550 TAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~-~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~ 628 (757)
....+-+-+.++|+... +.|.+.++.|+-.+.+..++ .+...|..++-++.++...++.+++.++++.|-..-+
T Consensus 422 ~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S-----~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~ 496 (516)
T KOG2956|consen 422 RAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS-----TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKL 496 (516)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC-----chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHH
Confidence 46677778899998874 46777777777776666553 4567889999999999999998899999988777766
Q ss_pred HHHHHHHhcC
Q 004389 629 TPLQEIINQG 638 (757)
Q Consensus 629 ~~l~~~~~~~ 638 (757)
.-++=.++..
T Consensus 497 ~LlqlYinRa 506 (516)
T KOG2956|consen 497 NLLQLYINRA 506 (516)
T ss_pred HHHHHHHHHh
Confidence 6555555443
No 115
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=65.28 E-value=2.3e+02 Score=31.53 Aligned_cols=53 Identities=11% Similarity=0.094 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHh
Q 004389 36 TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKF 94 (757)
Q Consensus 36 s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~~ 94 (757)
-++-|..+-.|+.. +.+.++|..|...|...|++...... ..|...++.+...
T Consensus 26 i~~iW~~~~DLi~~-~~p~e~R~~~~~ll~~~i~~~~~~~~-----~~R~~fF~~I~~~ 78 (464)
T PF11864_consen 26 IEEIWYAAKDLIDP-NQPSEARRAALELLIACIKRQDSSSG-----LMRAEFFRDISDP 78 (464)
T ss_pred HHHHHHHHhhhcCC-CCCHHHHHHHHHHHHHHHHccccccH-----HHHHHHHHHHhcC
Confidence 35779999999974 67889999999999999998754322 3556666666543
No 116
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=62.25 E-value=2e+02 Score=33.65 Aligned_cols=205 Identities=14% Similarity=0.156 Sum_probs=105.2
Q ss_pred hHHHHHHHHhhcccCc----cccccHHHHHhhcCCCCC---hHHHHHHHH--HHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 004389 471 EAALFCIRAISTYVSV----VEAEVMPQVMALLPKLPQ---QPQLLQTVC--LTIGAYSKWFDAASSDPSILASVLSILT 541 (757)
Q Consensus 471 Ea~l~~l~~ia~~~~~----~~~~~l~~l~~~l~~l~~---~~~l~~t~~--~~ig~~~~~l~~~~~~~~~l~~~l~~l~ 541 (757)
+.++..++.++..-.. ...+.++.+++++..-+. ...+...++ ..--+++.-+.... -++.++...+
T Consensus 388 ~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~----gL~~L~~ra~ 463 (708)
T PF05804_consen 388 EVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGN----GLQSLMKRAL 463 (708)
T ss_pred HHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcC----cHHHHHHHHH
Confidence 6788888888753211 124578888888754332 111111111 11223333333221 3455554443
Q ss_pred hccCCChHHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcC-ChHHHH
Q 004389 542 SGMSTSEDTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL-PQVDAK 617 (757)
Q Consensus 542 ~~l~~~~~v~~~Aa~al~~l~~~~~---~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~-~~e~~~ 617 (757)
+. ++|- ..+.+++++++-+ ..+.+|+.+|+..+ .. .++...++|++|.+.+-. |+....
T Consensus 464 ~~-~D~l-----LlKlIRNiS~h~~~~k~~f~~~i~~L~~~v----~~-------~~~ee~~vE~LGiLaNL~~~~ld~~ 526 (708)
T PF05804_consen 464 KT-RDPL-----LLKLIRNISQHDGPLKELFVDFIGDLAKIV----SS-------GDSEEFVVECLGILANLTIPDLDWA 526 (708)
T ss_pred hc-ccHH-----HHHHHHHHHhcCchHHHHHHHHHHHHHHHh----hc-------CCcHHHHHHHHHHHHhcccCCcCHH
Confidence 31 2221 2345777776542 23445555555543 22 234578999999776553 332333
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH--HHHHHHHHHHHHhcCCCHHHH
Q 004389 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI--QRLWPIFKAIFDIRAWDMRTM 695 (757)
Q Consensus 618 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~v~ 695 (757)
..++. ..+++-+.+.+...... + ......+-.+|++.. . +.++..+ ..+.+.+..++.....|.+++
T Consensus 527 ~ll~~--~~llp~L~~~L~~g~~~-d----Dl~LE~Vi~~gtla~---d-~~~A~lL~~sgli~~Li~LL~~kqeDdE~V 595 (708)
T PF05804_consen 527 QLLQE--YNLLPWLKDLLKPGASE-D----DLLLEVVILLGTLAS---D-PECAPLLAKSGLIPTLIELLNAKQEDDEIV 595 (708)
T ss_pred HHHHh--CCHHHHHHHHhCCCCCC-h----HHHHHHHHHHHHHHC---C-HHHHHHHHhCChHHHHHHHHHhhCchHHHH
Confidence 44432 24555566666533221 1 122222233443332 1 2233333 367888888888888889988
Q ss_pred HHHHHHHHHHHH
Q 004389 696 ESLCRACKYAVR 707 (757)
Q Consensus 696 e~~~~~~~~~~~ 707 (757)
=++..+|.+++.
T Consensus 596 lQil~~f~~ll~ 607 (708)
T PF05804_consen 596 LQILYVFYQLLF 607 (708)
T ss_pred HHHHHHHHHHHc
Confidence 888888888776
No 117
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=62.24 E-value=1.8e+02 Score=39.92 Aligned_cols=169 Identities=9% Similarity=0.015 Sum_probs=103.6
Q ss_pred hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccc
Q 004389 565 CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 644 (757)
Q Consensus 565 ~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 644 (757)
..+.+.||++.|+.....+..+. -.+....+++.++=+-+.....|....-+-.++.++++.++..+......
T Consensus 623 nervl~phv~~Ii~~smela~~a----~eplnYf~LLraLFRsigGg~~d~ly~e~lplL~~lLe~ln~l~~~~~s~--- 695 (3550)
T KOG0889|consen 623 NERVLRPHVHDIISTSMELATTA----PEPLNYFQLLRALFRSIGGGAFDSLYREVLPLLPNLLEILNHLLSSFHSQ--- 695 (3550)
T ss_pred chhhcccchhHHHHHHHHHHhcC----CcchhHHHHHHHHHHHhhccchHhHHHHHHHHHHHHHHHHHHHhhccCcc---
Confidence 34678899999998877665432 12456677888887777776666555555566777777777776544322
Q ss_pred cCcchhhHHHHHHHHH-hhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-h----hhhhHH
Q 004389 645 KHPRDLTVHIDRFAYI-FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR-F----MGITIG 718 (757)
Q Consensus 645 ~~~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~-~----~~p~l~ 718 (757)
..+++ ..+++=++ +| -..+.|.+.-+|..+...+ .++++++-+..+.+..++..+-+ + +.|..+
T Consensus 696 -~mkdL--fvELclTvPvR----LS~Llpylp~LM~PLv~aL---kgs~~lvsQgLRtlelcvDnltPefL~~~mepv~~ 765 (3550)
T KOG0889|consen 696 -GMKDL--FVELCLTLPVR----LSSLLPYLPLLMKPLVFAL---KGSPELVSQGLRTLELCVDNLTPEFLDPIMEPVRD 765 (3550)
T ss_pred -chHHH--HHHHHHhhhHH----HHHhhhhhhhhhhHHHHHh---cCCHHHHHHHHhHHHHHHhcCChHhhhHHHHHHHH
Confidence 11221 11211111 00 0112344455555555444 35789999999999998887643 3 445555
Q ss_pred HHHHHHHHHHhhcCCcchHhhHHHHHHHhCCc
Q 004389 719 AILEEIQGLYQQHQQPCFLYLSSEVIKVVFPP 750 (757)
Q Consensus 719 ~~~~~l~~~~~~~~~~~~l~~~~~~i~~f~~~ 750 (757)
.+++.+....+..|..++-..+-.+..+||+.
T Consensus 766 ~lmqaLw~~l~~~~~~s~s~~a~rILGKlgG~ 797 (3550)
T KOG0889|consen 766 DLMQALWSHLRPVPNYSYSHRALRILGKLGGR 797 (3550)
T ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHhhcCc
Confidence 56666666666555667788888888888863
No 118
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=62.12 E-value=94 Score=31.88 Aligned_cols=54 Identities=4% Similarity=0.059 Sum_probs=36.2
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh----c--CCHHHHHHHHHHHhh
Q 004389 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL----C--GYLDGLYNVYRTAVN 585 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l----~--p~l~~ll~~~~~l~~ 585 (757)
+++-+++.++..+++.. .++..++..+..|.+.+.... . ...+.+.+.+.+.+.
T Consensus 116 ~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~ 176 (282)
T PF10521_consen 116 HWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLY 176 (282)
T ss_pred hhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhh
Confidence 56666666666666643 499999999999999875533 2 344555566665553
No 119
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=60.57 E-value=2.9e+02 Score=32.76 Aligned_cols=188 Identities=12% Similarity=0.142 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH----hhhhhc-CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD----CRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~----~~~~l~-p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~ 606 (757)
++|+++.+++.+ ++. ++.=|...+.++-+. ....+. ...+.+...+..+ +. ...+.....+.=.++..
T Consensus 121 ~lPG~~~~Lf~~--~~~-~r~WA~~~~~~l~~~~~~~t~~~~~~av~~~l~~~l~~i-~~---~~~~~~~~~~fW~g~~~ 193 (727)
T PF12726_consen 121 LLPGMTYFLFDG--NPE-RRRWAERWWQRLKRPPYSITDEEFDWAVLDELSSHLYRI-SP---NNYNPDSVIRFWSGFSL 193 (727)
T ss_pred ccchhhhhhhcC--CHH-HHHHHHHHHHHcCCCccCCchhhhhHHHHHHHHHHHHHh-cc---CCCChhHHHHHHHHHHH
Confidence 788888888776 555 888888888887543 233343 2344455555555 22 13556677789999999
Q ss_pred HHhcCChHHHHHHHHH-hhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC-------CCcchHHHHHHHH
Q 004389 607 VITELPQVDAKKALEM-LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN-------HPEAVADAIQRLW 678 (757)
Q Consensus 607 vi~~~~~e~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~~~ 678 (757)
++..++.+.+...+.. =+.|++.-+-+.+.... .......|+++..+++..+ .|.....+++.++
T Consensus 194 Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~-------~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~p~~ild~If 266 (727)
T PF12726_consen 194 ILRLLDKEQITHSLRALELDPIYRLLLNHLSSNL-------SPPLPILLRCLSILLEKLGSDFWDAMGPISPQVILDQIF 266 (727)
T ss_pred HHHHccHHHHHHHHhccccchHHHHHHHHhhccc-------chhHHHHHHHHHHHHHhCHHHHhcccCCCCHHHHHHHHh
Confidence 9999998888777765 12344444444444221 1123344555555555443 1222233444443
Q ss_pred --HHHHHHHHhcCCCHHH-----HHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcCC
Q 004389 679 --PIFKAIFDIRAWDMRT-----MESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQQ 733 (757)
Q Consensus 679 --~~l~~~l~~~~~~~~v-----~e~~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~~~~~~ 733 (757)
|.+...|.....++.. ......-+.-.+++++ .+-.+....++.++...++.++.
T Consensus 267 ~np~f~~~L~~~~~~~~~~~~~~~~~~~sWi~pf~~SL~~~~~~~~~~~l~~~Ll~~~q~~~~ 329 (727)
T PF12726_consen 267 DNPAFKKLLLQSQEDEISESDDDLPDLLSWISPFLRSLSPSQRSQACRKLLHFLLERLQHDRF 329 (727)
T ss_pred CChHHHHHHHhhccCCccccchhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhcccc
Confidence 3444444433221111 1223334444444443 23456666677777776666443
No 120
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=59.80 E-value=1.6e+02 Score=27.92 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=62.4
Q ss_pred CCCh-HHHHHHHHHHHHHHHHhhhhh-------------cCCHHH----HHHHHHH---HhhCcCCCCCChhhHHHHHHH
Q 004389 545 STSE-DTAAAAALAFRHICDDCRKKL-------------CGYLDG----LYNVYRT---AVNGEGSLKVSAEDSLHLVEA 603 (757)
Q Consensus 545 ~~~~-~v~~~Aa~al~~l~~~~~~~l-------------~p~l~~----ll~~~~~---l~~~~~~~~l~~~~~~~l~ea 603 (757)
.||. +++..|+.++..+.+.++..+ .|+... +++.... .++.+ -+......++++
T Consensus 50 ~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK~ 125 (182)
T PF13251_consen 50 KDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLKC 125 (182)
T ss_pred cCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHH
Confidence 4554 599999999998887654332 233222 2222222 22222 124466789999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhh
Q 004389 604 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (757)
Q Consensus 604 i~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (757)
++.++++.|.++... .++..++..+...+.... .......+.+++.++..
T Consensus 126 la~Lv~~tPY~rL~~---~ll~~~v~~v~~~l~~~d-------~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 126 LAVLVQATPYHRLPP---GLLTEVVTQVRPLLRHRD-------PNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHccCChhhcCH---hHHHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHcC
Confidence 999999999888763 455666666666665421 12233455666666543
No 121
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.00 E-value=96 Score=32.39 Aligned_cols=137 Identities=14% Similarity=0.151 Sum_probs=84.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCcccc----ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc------hhH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEA----EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SIL 533 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~----~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~------~~l 533 (757)
..+-+++|.++.-+.-+.+.++...+ .-+..++..+. ..++.||..|.++||... .+||... ..+
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~---qNNP~~Qe~v~E~~~L 168 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAV---QNNPKSQEQVIELGAL 168 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHH---hcCHHHHHHHHHcccH
Confidence 56789999999999999888875432 23444444332 237999999999999864 5666421 123
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhc-----CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHH
Q 004389 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~-----p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi 608 (757)
..++..+. -.+|..++..|-+|+..+.+.-..-.. +-. +.+.++++.+ ..+...+..++.-++.++
T Consensus 169 ~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~----~~L~~vl~~~---~~~~~lkrK~~~Ll~~Ll 239 (342)
T KOG2160|consen 169 SKLLKILS--SDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGY----QVLRDVLQSN---NTSVKLKRKALFLLSLLL 239 (342)
T ss_pred HHHHHHHc--cCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCH----HHHHHHHHcC---CcchHHHHHHHHHHHHHH
Confidence 33333332 233445889999999999886543221 233 3444444432 123455677777788877
Q ss_pred hcCChH
Q 004389 609 TELPQV 614 (757)
Q Consensus 609 ~~~~~e 614 (757)
...+.+
T Consensus 240 ~~~~s~ 245 (342)
T KOG2160|consen 240 QEDKSD 245 (342)
T ss_pred Hhhhhh
Confidence 775544
No 122
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.39 E-value=2.1e+02 Score=30.06 Aligned_cols=142 Identities=25% Similarity=0.269 Sum_probs=76.5
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcC---------hhHHHHHHHHhhcCCC------------------------
Q 004389 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT---------IDAWQVADNLLHDATS------------------------ 52 (757)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s---------~~aw~~~~~lL~~~~~------------------------ 52 (757)
++..++..||..+++..+-||-.-|..+... .++.....+||++|.-
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~ 330 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA 330 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee
Confidence 3777888999998998888887777765432 2334455666665311
Q ss_pred ----------------ChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHH-----HHHHHHHHhcCCChHHHHHHHHHHHH
Q 004389 53 ----------------NLETLIFCSQTLRSKVQRDVEELPSEAVRGLQD-----SLNTLLKKFHKGPPKVRTQISIAVAA 111 (757)
Q Consensus 53 ----------------~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~-----~Ll~~l~~~~~~~~~v~~kL~~~la~ 111 (757)
+-+++-.|..||++.--.. +..+..+++ .+..++.. +|-.|+..+..++|.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAass-----e~n~~~i~esgAi~kl~eL~lD---~pvsvqseisac~a~ 402 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASS-----EHNVSVIRESGAIPKLIELLLD---GPVSVQSEISACIAQ 402 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhh-----hhhhHHHhhcCchHHHHHHHhc---CChhHHHHHHHHHHH
Confidence 1234555555555433311 112222222 12223332 788999999999999
Q ss_pred HHhhccc-cccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhc
Q 004389 112 LAVHISA-EDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (757)
Q Consensus 112 l~~~~~~-~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~ 155 (757)
++..+.. ...-+.++++-++....+.. +.....-.-|..+.+.+
T Consensus 403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v 448 (550)
T KOG4224|consen 403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV 448 (550)
T ss_pred HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence 9886532 11222235555555444321 12223334444444444
No 123
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.36 E-value=1e+02 Score=35.61 Aligned_cols=116 Identities=11% Similarity=0.174 Sum_probs=77.3
Q ss_pred hhhHHHhhhhhcCh--hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc--ccccHHHHHhhcCCCCC
Q 004389 429 VADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQ 504 (757)
Q Consensus 429 ~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~~l~~ 504 (757)
+.|++.++..-.+. +..+.++.+.+.. .+..+-+.+.+.-++..++.. .+.++..+.+.+. + .
T Consensus 412 ivd~Ii~iie~~pdsKe~~L~~LCefIED-----------ce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRvi-L-E 478 (865)
T KOG1078|consen 412 IVDAIIDIIEENPDSKERGLEHLCEFIED-----------CEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVI-L-E 478 (865)
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHh-----------ccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhh-h-h
Confidence 66666665543321 2445555544432 234466777777777776644 2455666665421 1 3
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICD 563 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~ 563 (757)
+..+|..+..++.+|+ ..++. ..+++...+-+++.++. .|+.+|..++..+-+
T Consensus 479 n~ivRaaAv~alaKfg---~~~~~---l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFG---AQDVV---LLPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhHHHHHHHHHHHh---cCCCC---ccccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 7889999999999887 55564 77888888989997764 499999999998864
No 124
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]
Probab=58.20 E-value=3.5e+02 Score=31.42 Aligned_cols=118 Identities=13% Similarity=0.151 Sum_probs=66.4
Q ss_pred cchhhHHHHHHHHhhcccCccc---c---------ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHH
Q 004389 467 WRPAEAALFCIRAISTYVSVVE---A---------EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILA 534 (757)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~---~---------~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~ 534 (757)
--+.--++.++++++.++.... + ..+..++..+..++....+|...-.+++|.-.-+.. ....++|
T Consensus 660 Ia~c~~~lmaig~lakgf~~rlvt~~qvg~~~vf~~~ldvil~~ls~f~k~E~iRsavrft~hRmI~~lg~--~vlPfip 737 (980)
T KOG2021|consen 660 IAECHHILMAIGTLAKGFHIRLVTENQVGNMVVFSNILDVILVTLSFFNKFENIRSAVRFTFHRMIPILGN--KVLPFIP 737 (980)
T ss_pred HHHHHHHHHHHHHHhhcccccCcchhcccHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhcch--hhhcchH
Confidence 3344566778888888876432 1 122333333444443444555555555555554432 1222778
Q ss_pred HHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhC
Q 004389 535 SVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 535 ~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~ 586 (757)
.++..+++...-.+ ++-.--...+.++=.+|.+.+...+++++..+++++..
T Consensus 738 klie~lL~s~d~kEmvdfl~flsQLihkfk~~~~~ilnqmlppll~rIfsvi~r 791 (980)
T KOG2021|consen 738 KLIELLLSSTDLKEMVDFLGFLSQLIHKFKTDCYQILNQMLPPLLNRIFSVIER 791 (980)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88887766542222 23333334444555667777777788888888888873
No 125
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=57.12 E-value=4.4e+02 Score=32.20 Aligned_cols=88 Identities=24% Similarity=0.174 Sum_probs=56.8
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHH
Q 004389 8 KEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSL 87 (757)
Q Consensus 8 ~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~L 87 (757)
...+..| ..+|+..|+.|=+.|.++. .+++-.....+|.+ .+..||..|+..|..... .+ +.. ..|
T Consensus 624 ~~L~~~L-~D~d~~VR~~Av~~L~~~~-~~~~~~~L~~aL~D--~d~~VR~~Aa~aL~~l~~-~~---~~~------~~L 689 (897)
T PRK13800 624 AELAPYL-ADPDPGVRRTAVAVLTETT-PPGFGPALVAALGD--GAAAVRRAAAEGLRELVE-VL---PPA------PAL 689 (897)
T ss_pred HHHHHHh-cCCCHHHHHHHHHHHhhhc-chhHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh-cc---Cch------HHH
Confidence 3444444 7889999999999999987 56666666677754 577899999999965422 11 111 123
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHH
Q 004389 88 NTLLKKFHKGPPKVRTQISIAVAAL 112 (757)
Q Consensus 88 l~~l~~~~~~~~~v~~kL~~~la~l 112 (757)
...+.. .+..||...+.+|..+
T Consensus 690 ~~~L~~---~d~~VR~~A~~aL~~~ 711 (897)
T PRK13800 690 RDHLGS---PDPVVRAAALDVLRAL 711 (897)
T ss_pred HHHhcC---CCHHHHHHHHHHHHhh
Confidence 334332 4556777666666554
No 126
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=56.44 E-value=1.7e+02 Score=27.17 Aligned_cols=81 Identities=10% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcch---HhhHHHHHHHhCCc
Q 004389 674 IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCF---LYLSSEVIKVVFPP 750 (757)
Q Consensus 674 ~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~---l~~~~~~i~~f~~~ 750 (757)
-+.++|.+.+.+.. .++.+.+.+++++..++..++.++..-++.++..+....-....+++ ..+++.+...++++
T Consensus 71 k~~l~~~Ll~~~~~--~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p 148 (168)
T PF12783_consen 71 KDDLCPALLKNLSS--SDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDP 148 (168)
T ss_pred HHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhCh
Confidence 35688888777765 35889999999999999999999888888888888774433233221 23555556666666
Q ss_pred cccccc
Q 004389 751 EVLALI 756 (757)
Q Consensus 751 ~~~~~~ 756 (757)
..+..+
T Consensus 149 ~~l~~l 154 (168)
T PF12783_consen 149 QFLVDL 154 (168)
T ss_pred hHHHHH
Confidence 655443
No 127
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=56.44 E-value=5.2e+02 Score=32.80 Aligned_cols=258 Identities=9% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHhhcccCcc--ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-H
Q 004389 473 ALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-D 549 (757)
Q Consensus 473 ~l~~l~~ia~~~~~~--~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~ 549 (757)
|+-|++.|.+.=+.. ..++...+-.-+. .++..||.++++++|+| +..+|+ +.+.....+..++.++. .
T Consensus 836 AlKclS~ive~Dp~vL~~~dvq~~Vh~R~~--DssasVREAaldLvGrf---vl~~~e---~~~qyY~~i~erIlDtgvs 907 (1692)
T KOG1020|consen 836 ALKCLSMIVEADPSVLSRPDVQEAVHGRLN--DSSASVREAALDLVGRF---VLSIPE---LIFQYYDQIIERILDTGVS 907 (1692)
T ss_pred HHHHHHHHHhcChHhhcCHHHHHHHHHhhc--cchhHHHHHHHHHHhhh---hhccHH---HHHHHHHHHHhhcCCCchh
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhH--------------------------------
Q 004389 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDS-------------------------------- 597 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~-------------------------------- 597 (757)
||-++-+-++.+|+. .|.++.+...+-.++. ++..++.
T Consensus 908 VRKRvIKIlrdic~e-----~pdf~~i~~~cakmlr-----Rv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~ 977 (1692)
T KOG1020|consen 908 VRKRVIKILRDICEE-----TPDFSKIVDMCAKMLR-----RVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKIS 977 (1692)
T ss_pred HHHHHHHHHHHHHHh-----CCChhhHHHHHHHHHH-----HhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhH
Q ss_pred -----------------HHHHHHHHHHHhcCChHHHH-HHHHHhhhhHHHHHHHHHhcCCC---cccccCcchhhHHHHH
Q 004389 598 -----------------LHLVEALSMVITELPQVDAK-KALEMLCLPVVTPLQEIINQGPE---ILQKKHPRDLTVHIDR 656 (757)
Q Consensus 598 -----------------~~l~eai~~vi~~~~~e~~~-~~l~~l~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~l~~ 656 (757)
..++..|-..-.....+... +.....+.+.+.-+..|+..... ..+......-...+..
T Consensus 978 ~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~ 1057 (1692)
T KOG1020|consen 978 LEVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAY 1057 (1692)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHH
Q ss_pred HHHHhhhcCC-CcchH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 004389 657 FAYIFRYVNH-PEAVA-DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP 734 (757)
Q Consensus 657 l~~~~~~~~~-~~~~~-~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~ 734 (757)
+++++-.-+. |.-+. ..+..+-|.+..- .+-....++...+...++..+--...-...|+..+=+.+....-.....
T Consensus 1058 lstL~~FskirP~Llt~khv~tL~PYL~s~-~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a 1136 (1692)
T KOG1020|consen 1058 LSTLFVFSKIRPQLLTKKHVITLQPYLTSK-ASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMA 1136 (1692)
T ss_pred HHHHHHHHhcCchhccHHHHHHhhhHHhcc-ccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchH
Q ss_pred chHhhHHHHHHHhCC
Q 004389 735 CFLYLSSEVIKVVFP 749 (757)
Q Consensus 735 ~~l~~~~~~i~~f~~ 749 (757)
....+.+.+-..|++
T Consensus 1137 ~V~~~vsCl~sl~~k 1151 (1692)
T KOG1020|consen 1137 TVVEAVSCLGSLATK 1151 (1692)
T ss_pred HHHHHHHHHHHHHhh
No 128
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.10 E-value=3.7e+02 Score=31.03 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=89.9
Q ss_pred HHHHHHHHhcChhHHHHH----HHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChH
Q 004389 26 ADRWLQDFQHTIDAWQVA----DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPK 100 (757)
Q Consensus 26 A~~~L~~~q~s~~aw~~~----~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~ 100 (757)
+-+|...+++.|-.-.+. ..+|.. .+++-.|||=.+++|..-+. .-.+++++-.+.+...++.-+.. ..+.
T Consensus 66 la~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~D---rep~ 141 (892)
T KOG2025|consen 66 LARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKD---REPN 141 (892)
T ss_pred HHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhc---cCch
Confidence 444555555544332222 334432 24566799999999876555 44678888888888888777765 4678
Q ss_pred HHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhHHHHHh----hhchhhcccccccCChHHHHHHHHHH
Q 004389 101 VRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELL----TVLPEEVFNYKIAARPERRRQFEKEL 174 (757)
Q Consensus 101 v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~--~~~~~L~~L----~~L~ee~~~~~~~~~~~~r~~l~~~l 174 (757)
||.+-..+|+.+ |..+ .=+++.....+...++++|. ....+|..+ +++|--+.+.+. +..+-|.-+...+
T Consensus 142 VRiqAv~aLsrl--Q~d~-~dee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarD-V~~anRrlvY~r~ 217 (892)
T KOG2025|consen 142 VRIQAVLALSRL--QGDP-KDEECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARD-VSGANRRLVYERC 217 (892)
T ss_pred HHHHHHHHHHHH--hcCC-CCCcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhh-hhHHHHHHHHHHh
Confidence 898866666555 4222 11222144444555555542 333444333 233332322221 1222222222211
Q ss_pred ----HHhHH---HHHHHHHHhhhhh--HHHHHHHHHHHH-Hhhcc
Q 004389 175 ----TSQME---VALSTLTACLHIN--ELKEQVLEAFAS-WLRLK 209 (757)
Q Consensus 175 ----~~~~~---~vl~~l~~~l~~~--~~~~~~l~~l~~-wi~~~ 209 (757)
....- .-..++...+++- ++..++-+.+.+ |+.+.
T Consensus 218 lpkid~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~ 262 (892)
T KOG2025|consen 218 LPKIDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS 262 (892)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc
Confidence 11111 1123455555542 467777777654 99973
No 129
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.53 E-value=4.1e+02 Score=31.38 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=89.3
Q ss_pred hhhHHHhhhhhcChh-------HHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc--ccccHHHHHhhc
Q 004389 429 VADVLIDAASVLGGD-------ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALL 499 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~-------~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l 499 (757)
++..+.++|.++++. ..++.+.+.|... .--.-.|=+|-++.-|+..=+.. ....+...+..+
T Consensus 232 AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~I--------eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Lsyl 303 (1051)
T KOG0168|consen 232 ACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTI--------EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYL 303 (1051)
T ss_pred HHHHHHHHHhhccchhheeecccchHHHHHhhhhh--------hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHH
Confidence 444566666666542 3555566655432 11122344555555555432211 112234444433
Q ss_pred CCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcC-CHH
Q 004389 500 PKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCG-YLD 574 (757)
Q Consensus 500 ~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---~l~p-~l~ 574 (757)
-=| .-.+++.|+-+....+.-+. |+...++-.+++.|.+.++... ++...+|.+|.++++...+ .|.. .-.
T Consensus 304 DFF--Si~aQR~AlaiaaN~Cksi~--sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~ 379 (1051)
T KOG0168|consen 304 DFF--SIHAQRVALAIAANCCKSIR--SDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH 379 (1051)
T ss_pred HHH--HHHHHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch
Confidence 212 24456666666666666554 3322477788888877775543 4888889999999875422 2221 123
Q ss_pred HHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 575 GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 575 ~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
.+++.+.+++... ...++......++..+....+.-|
T Consensus 380 dLi~~~~qLlsvt-~t~Ls~~~~~~vIrmls~msS~~p 416 (1051)
T KOG0168|consen 380 DLITNIQQLLSVT-PTILSNGTYTGVIRMLSLMSSGSP 416 (1051)
T ss_pred hHHHHHHHHHhcC-cccccccchhHHHHHHHHHccCCh
Confidence 4566666666532 113555555666666655555533
No 130
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=53.00 E-value=4.4e+02 Score=30.96 Aligned_cols=84 Identities=12% Similarity=0.186 Sum_probs=49.2
Q ss_pred ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCC--chhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH--h
Q 004389 490 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSD--PSILASVLSILTSGMSTSEDTAAAAALAFRHICDD--C 565 (757)
Q Consensus 490 ~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~--~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~--~ 565 (757)
..++.+...++. .|..++..++.++..++-.-...+.. ..++|.+..+ +.+++ .+..|...|..++.+ +
T Consensus 331 giV~kL~kLl~s--~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~L----L~d~~-~~~val~iLy~LS~dd~~ 403 (708)
T PF05804_consen 331 GIVEKLLKLLPS--ENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVEL----LKDPN-FREVALKILYNLSMDDEA 403 (708)
T ss_pred CCHHHHHHHhcC--CCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHH----hCCCc-hHHHHHHHHHHhccCHhh
Confidence 556777766653 37788999999998886422221110 0144444444 45666 677788888888853 4
Q ss_pred hhhhc--CCHHHHHHHH
Q 004389 566 RKKLC--GYLDGLYNVY 580 (757)
Q Consensus 566 ~~~l~--p~l~~ll~~~ 580 (757)
+..+. .-++.+++.+
T Consensus 404 r~~f~~TdcIp~L~~~L 420 (708)
T PF05804_consen 404 RSMFAYTDCIPQLMQML 420 (708)
T ss_pred HHHHhhcchHHHHHHHH
Confidence 44443 2355555544
No 131
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=50.90 E-value=3.1e+02 Score=28.52 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICD 563 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~ 563 (757)
+..++.+.|++..+... +...+++++..+|.
T Consensus 2 ~y~~l~~ll~~s~~~~p-~~~s~~~~l~~v~~ 32 (310)
T cd05134 2 YYSPLRDLLLKSADVEP-VSASAAHILGEVCR 32 (310)
T ss_pred ccHHHHHHHHhCcccCC-cchhHHHHHHHhCc
Confidence 44566677776654333 66777888888886
No 132
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=50.63 E-value=3.1e+02 Score=28.52 Aligned_cols=108 Identities=12% Similarity=0.083 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHHHHhc-CChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHH
Q 004389 594 AEDSLHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVAD 672 (757)
Q Consensus 594 ~~~~~~l~eai~~vi~~-~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 672 (757)
...|+..++++..++.. ..++. +..-..-++..+.++++.... +....++..++-+.=.++.......
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~----v~~~~~tL~~~~~k~lkkg~~-------~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDF----VEDRRETLLDALLKSLKKGKS-------EEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHH----HHHHHHHHHHHHHHHhccCCH-------HHHHHHHHHHHHHhhhcCCCccHHH
Confidence 67889999999888765 32232 333333444555555554331 2333455556655555554456678
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Q 004389 673 AIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 712 (757)
Q Consensus 673 ~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~ 712 (757)
++..+.|+|..++.....+..++.+++.+++-+.-..+.+
T Consensus 126 i~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 126 IFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred HHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 8999999999999876556677777777877765544443
No 133
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=49.61 E-value=2e+02 Score=26.03 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=48.4
Q ss_pred HHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l--~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..++..|-+-+.+++ .++.+|-..+..+.+.|+..+...+ ..+++.+..++... .....+.++++-|..-...
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~----~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR----VHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc----CCHHHHHHHHHHHHHHHHH
Confidence 455666655565432 3999999999999999998665332 34666676666541 4456666666666555555
Q ss_pred CC
Q 004389 611 LP 612 (757)
Q Consensus 611 ~~ 612 (757)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 134
>KOG4541 consensus Nuclear transport receptor exportin 4 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.50 E-value=4.1e+02 Score=29.61 Aligned_cols=105 Identities=14% Similarity=0.065 Sum_probs=64.8
Q ss_pred HHHHHHHHhccCCChHHHHHHHHHHHHHHHH-hhhhhcCCHHHHHHHHHHHhhCcC-CCCCChhhHHHHHHHHHHHHhc-
Q 004389 534 ASVLSILTSGMSTSEDTAAAAALAFRHICDD-CRKKLCGYLDGLYNVYRTAVNGEG-SLKVSAEDSLHLVEALSMVITE- 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~-~~~~l~p~l~~ll~~~~~l~~~~~-~~~l~~~~~~~l~eai~~vi~~- 610 (757)
..++.-+..+=+... +..-|-.++..+++. -+..+.-.-..+++...+..+... ..-++...+..+|+++...-.+
T Consensus 298 ~kVla~lvn~~sE~~-L~~Da~q~l~~lVe~~~~~~vvv~~e~~~~laeq~~s~~~~l~i~s~p~~~~lmkaLvl~gfa~ 376 (748)
T KOG4541|consen 298 GKVLADLVNGESETA-LVPDALQSLFVLVEEANNHPVVVLSESIIKLAEQCLSAEMRLSIFSPPLMEALMKALVLWGFAY 376 (748)
T ss_pred HHHHHHHhcccchhh-hhHHHHHHHHHHHHHhccCCeeeccHHHHHHHHHHhccCCcccccCchHHHHHHHHHHHHHHHH
Confidence 334444433333333 556666666666665 344455444556666666655321 1123567888999998776443
Q ss_pred CChHHHHHHHHHhhhhHHHHHHHHHhcCC
Q 004389 611 LPQVDAKKALEMLCLPVVTPLQEIINQGP 639 (757)
Q Consensus 611 ~~~e~~~~~l~~l~~~~~~~l~~~~~~~~ 639 (757)
+..|....+.+..+.|+=+++-...++..
T Consensus 377 ~d~e~~~n~~~~~LqpL~~Rf~~~~nq~~ 405 (748)
T KOG4541|consen 377 LDLEEECNLGSNKLQPLPSRFFTYFNQHN 405 (748)
T ss_pred hhHHHHHHHHHhhccccHHHHHHHhcccc
Confidence 55566678888999999999888887764
No 135
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=48.01 E-value=2.6e+02 Score=28.99 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=21.7
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDD 564 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~ 564 (757)
|..++.+.|++..+..+ +...+++.|..+|.+
T Consensus 2 ~Y~~l~~ll~~s~~~~p-~~~s~~~~l~e~~~~ 33 (313)
T cd05394 2 YYSSLRSLLLKSPDVQP-ISASAAYILGEVCRD 33 (313)
T ss_pred chHHHHHHHHhCcccCC-CcccHHHHHHHHHhh
Confidence 45667777777764333 567777888888865
No 136
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=47.88 E-value=3.2e+02 Score=28.91 Aligned_cols=149 Identities=10% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHH-HHHHHHHHHhhHHHHh
Q 004389 446 LKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQL-LQTVCLTIGAYSKWFD 524 (757)
Q Consensus 446 l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l-~~t~~~~ig~~~~~l~ 524 (757)
++..+..+.+.+. +.+-..++++|..+. -+.+-..++|.++..+.+--.+-.- -...+..+.++..=+-
T Consensus 176 lq~yf~~It~a~~-----~~~~~~r~~aL~sL~-----tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 176 LQLYFEEITEALV-----GSNEEKRREALQSLR-----TDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHh-----CCCHHHHHHHHHHhc-----cCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Q ss_pred hCCCCc--hhHHHHHHHHHhcc----------CCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCC
Q 004389 525 AASSDP--SILASVLSILTSGM----------STSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK 591 (757)
Q Consensus 525 ~~~~~~--~~l~~~l~~l~~~l----------~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~ 591 (757)
.||... .|+..+++.++.++ .+.. .+|..||..+..+|+.+...-...-+-++..+.+.+..+ .
T Consensus 246 ~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~---~ 322 (343)
T cd08050 246 DNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDP---K 322 (343)
T ss_pred cCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCC---C
Q ss_pred CChhhHHHHHHHHHHH
Q 004389 592 VSAEDSLHLVEALSMV 607 (757)
Q Consensus 592 l~~~~~~~l~eai~~v 607 (757)
-+.....-.+.|++.+
T Consensus 323 ~~~~~~YGAi~GL~~l 338 (343)
T cd08050 323 KPLTTHYGAIVGLSAL 338 (343)
T ss_pred CCcchhhHHHHHHHHh
No 137
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=47.32 E-value=3.6e+02 Score=28.24 Aligned_cols=100 Identities=11% Similarity=0.169 Sum_probs=64.1
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhh--------cC-CCCChHHHHHHHHHHHHhhHHH----HhhCCCCch
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL--------LP-KLPQQPQLLQTVCLTIGAYSKW----FDAASSDPS 531 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~--------l~-~l~~~~~l~~t~~~~ig~~~~~----l~~~~~~~~ 531 (757)
++-|+-| .|.+++.+...+.....+.++.+++. +. ++...|..|.....++..+... +..-|. .
T Consensus 85 p~~r~~e-vL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~--~ 161 (319)
T PF08767_consen 85 PDAREPE-VLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPP--E 161 (319)
T ss_dssp GGGS-HH-HHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-H--H
T ss_pred ccccChh-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCH--H
Confidence 4455445 34455666666555444555555553 33 3445688888888887776653 222222 3
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh
Q 004389 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRK 567 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~ 567 (757)
....++..+.-|+.|+. .+...+..++..+.+.+..
T Consensus 162 ~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 162 QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888764 5888999999988887766
No 138
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=47.14 E-value=32 Score=23.16 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=18.7
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHH
Q 004389 536 VLSILTSGMSTSE-DTAAAAALAFRHIC 562 (757)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~Aa~al~~l~ 562 (757)
+++.|.+.+.+++ .++..|+.|+.++|
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444444454443 59999999999987
No 139
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=46.34 E-value=4.2e+02 Score=28.83 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhc-ChhHHHHH----HHHhhc---CCCChHHHHHHHHHHHHHhhcCCC-CCCh
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQH-TIDAWQVA----DNLLHD---ATSNLETLIFCSQTLRSKVQRDVE-ELPS 77 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~-s~~aw~~~----~~lL~~---~~~~~~vr~faa~~L~~ki~~~w~-~l~~ 77 (757)
|.+.+. ++.++|+.+|......|..+-. -++--... ..++.+ .+.....--=...++.. |-+++. .+.+
T Consensus 135 i~~Ll~-l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~s-ii~gf~~plk~ 212 (409)
T PF01603_consen 135 IKKLLE-LFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGS-IINGFAVPLKE 212 (409)
T ss_dssp HHHHHH-TTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHH-HHTT--SS--H
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHH-HHhccCCCCcH
Confidence 444444 4488999999999999988543 22222111 111110 01111000011222233 333443 6777
Q ss_pred hhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC-chhHHHHHhhhchhhcc
Q 004389 78 EAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVF 156 (757)
Q Consensus 78 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~-~~~~~L~~L~~L~ee~~ 156 (757)
+.+..+++.|+.+...- .-...-.+|+.++..+..+++. -=.. ++..++..+..+.. ...++|..+..+.+-+.
T Consensus 213 eh~~fl~~vllPLh~~~--~~~~y~~~L~~~~~~f~~kdp~-l~~~--~i~~llk~WP~t~s~Kev~FL~el~~il~~~~ 287 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSP--HLSSYHQQLSYCVVQFLEKDPS-LAEP--VIKGLLKHWPKTNSQKEVLFLNELEEILEVLP 287 (409)
T ss_dssp HHHHHHHHTTGGGGGST--GGGGTHHHHHHHHHHHHHH-GG-GHHH--HHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCch-hHHH--HHHHHHHhCCCCCchhHHHHHHHHHHHHHhcC
Confidence 88888888777765431 1123456777777777666542 1111 45555556643322 22345555555544321
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHH-----HhhccCCCCCcccccchhHHHHHhc
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFAS-----WLRLKHRIPGSVLASHPLVLTALSS 229 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~-----wi~~~~~~~~~~l~~~~ll~~~~~~ 229 (757)
+ ..+......++..+..+++++ .+.+.++..+.+ ++.- ....+++.++..
T Consensus 288 -------~-------~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~---------~~~~i~p~i~~~ 344 (409)
T PF01603_consen 288 -------P-------EEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQ---------NSRVILPIIFPA 344 (409)
T ss_dssp -------H-------HHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHC---------THHHHHHHHHHH
T ss_pred -------H-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHh---------ChHHHHHHHHHH
Confidence 1 234567778888888888875 455555544322 2210 123455555555
Q ss_pred cC-------CcchHHHHHHHHHHHhh
Q 004389 230 LH-------SEILSEASVNVISELIH 248 (757)
Q Consensus 230 L~-------~~~~~~~a~~~l~~ii~ 248 (757)
|. ++.++..|.+++.-+..
T Consensus 345 L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 345 LYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 42 34555666665555554
No 140
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=44.80 E-value=2.7e+02 Score=26.04 Aligned_cols=107 Identities=16% Similarity=0.168 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc---cccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcccc
Q 004389 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHI---SAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNY 158 (757)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~---~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~~~ 158 (757)
.||.-|+..|.... .+...-+.||.+++.++... ..+.|++ +-+.+....++.| .-.+.++..||--+.
T Consensus 3 eikplLIsCL~~q~-~k~s~~KiL~~iVs~Va~~v~~~~~~~W~e--L~d~Ils~~~~e~---~kA~~IF~~L~~~l~-- 74 (174)
T PF04510_consen 3 EIKPLLISCLTMQE-TKESDFKILRRIVSHVAYEVFDLQEGGWDE--LSDCILSLSENEP---VKAFHIFICLPMPLY-- 74 (174)
T ss_pred chHHHHHHHHHhhc-ccHhHHHHHHHHHHHHHHHHHhcCCCCchh--HHHHHHHhhccch---HHHHHHHHhCCchhh--
Confidence 57888888888742 12345567777777776644 4578998 6666655443333 234445555541110
Q ss_pred cccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh-----HHHHHHH-HHHHHHhhc
Q 004389 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHIN-----ELKEQVL-EAFASWLRL 208 (757)
Q Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~-----~~~~~~l-~~l~~wi~~ 208 (757)
.+-+...+..+++-+.+.+.+| +....++ .++..||+.
T Consensus 75 ------------~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql 118 (174)
T PF04510_consen 75 ------------GEFLIPFMENLLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQL 118 (174)
T ss_pred ------------hhHHHHHHHHHHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHH
Confidence 1223444555555555555554 2233344 445567664
No 141
>PTZ00429 beta-adaptin; Provisional
Probab=43.23 E-value=6.4e+02 Score=29.97 Aligned_cols=87 Identities=10% Similarity=0.080 Sum_probs=51.4
Q ss_pred hhHHHHHHHHhhcccCccc-cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh
Q 004389 470 AEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE 548 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~ 548 (757)
+...|-.+..++. +++ ...+.++...... .++.++..++..||+.+.= .|. ....+++.|++.+++..
T Consensus 350 K~~KLeIL~~Lan---e~Nv~~IL~EL~eYa~d--~D~ef~r~aIrAIg~lA~k---~~~---~a~~cV~~Ll~ll~~~~ 418 (746)
T PTZ00429 350 KLEKLRLLLKLVT---PSVAPEILKELAEYASG--VDMVFVVEVVRAIASLAIK---VDS---VAPDCANLLLQIVDRRP 418 (746)
T ss_pred HHHHHHHHHHHcC---cccHHHHHHHHHHHhhc--CCHHHHHHHHHHHHHHHHh---ChH---HHHHHHHHHHHHhcCCc
Confidence 3444445554432 222 1233444443332 2578999999999998842 243 56777887777776543
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 004389 549 DTAAAAALAFRHICDDCRK 567 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~ 567 (757)
.+...+...++.+.+....
T Consensus 419 ~~v~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 419 ELLPQVVTAAKDIVRKYPE 437 (746)
T ss_pred hhHHHHHHHHHHHHHHCcc
Confidence 3555677778888765443
No 142
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=42.62 E-value=4e+02 Score=31.83 Aligned_cols=141 Identities=13% Similarity=0.124 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHH
Q 004389 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVV 628 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~ 628 (757)
.|..-|+..+..+|...+....+|.-.....+++-+.. -...-+..+..++-.+..+.+.+...++
T Consensus 310 ~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lke-----kk~~l~d~l~~~~d~~~ns~~l~~~~~~--------- 375 (815)
T KOG1820|consen 310 NVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKE-----KKSELRDALLKALDAILNSTPLSKMSEA--------- 375 (815)
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhh-----ccHHHHHHHHHHHHHHHhcccHHHHHHH---------
Confidence 37777788888888877776666665555555444321 1122333333333333333322221111
Q ss_pred HHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 004389 629 TPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 629 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 708 (757)
+...+... .++....+...+...++..+..-+.......+.|.+..... ..+.+|+.++..++..++++
T Consensus 376 --I~e~lk~k-------np~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~--D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 376 --ILEALKGK-------NPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHIN--DTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred --HHHHhcCC-------ChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhcc--CCcHHHHHHHHHHHHHHHHH
Confidence 11122211 22334445556666666655222334455667776654332 35799999999999999999
Q ss_pred hhhhhh
Q 004389 709 SKRFMG 714 (757)
Q Consensus 709 ~~~~~~ 714 (757)
+|+.+.
T Consensus 445 ~Ge~~~ 450 (815)
T KOG1820|consen 445 HGEEVF 450 (815)
T ss_pred hhHHHH
Confidence 998754
No 143
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=41.98 E-value=5.3e+02 Score=28.66 Aligned_cols=107 Identities=12% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcch
Q 004389 591 KVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV 670 (757)
Q Consensus 591 ~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 670 (757)
.++...+.++++++...+..+++|+++.+.+.+.-..++.. .. ......+...+-.+.+..+.|.|-
T Consensus 245 sLs~~tk~~L~~Sl~~wmkhVsedqiQ~Fve~l~vq~F~~~-------~~------~~~~~lC~saLqGLsqAMKlP~P~ 311 (589)
T PF11229_consen 245 SLSVNTKKYLFESLSLWMKHVSEDQIQAFVENLMVQQFKAA-------SR------PSNPELCQSALQGLSQAMKLPSPA 311 (589)
T ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhc-------CC------CCChHHHHHHHHHHHHHhcCCChh
Confidence 35677889999999999999999998777665443333211 10 011112333333333344445554
Q ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh
Q 004389 671 ADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF 712 (757)
Q Consensus 671 ~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~ 712 (757)
.-.-.-+....+.+++.+++ ++.+.-+..+..+.+|+.+.
T Consensus 312 ~h~Ws~Lc~ttekIF~lLPn--~i~~~eveLYi~vAkCLSEM 351 (589)
T PF11229_consen 312 QHCWSLLCETTEKIFDLLPN--KIQRNEVELYIGVAKCLSEM 351 (589)
T ss_pred hHHHHHHHHHHHHHHHhCcc--cccHHHHHHHHHHHHHHhhc
Confidence 33333334444555555543 33344445555555555443
No 144
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.71 E-value=4.2e+02 Score=31.07 Aligned_cols=64 Identities=8% Similarity=0.027 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGL 576 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~l 576 (757)
+|.|..+++.+.-..+.-. -...+...|++.|+.+..++...-..+..++..-+..+.||+..+
T Consensus 300 n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsF 363 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSF 363 (968)
T ss_pred CcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhce
Confidence 5666666655544333211 233445555555655443666666666677766555566776554
No 145
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=41.23 E-value=4.1e+02 Score=27.18 Aligned_cols=170 Identities=9% Similarity=0.018 Sum_probs=91.9
Q ss_pred HHHHHHHHHHH-Hh-hhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHH---HHHHHHHhhhhH
Q 004389 553 AAALAFRHICD-DC-RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD---AKKALEMLCLPV 627 (757)
Q Consensus 553 ~Aa~al~~l~~-~~-~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~---~~~~l~~l~~~~ 627 (757)
.++..+.-++. .. ++.+..+.+-++-.+..++.. .+.+.+..-++.+..++..++... ...+ .+.+.+
T Consensus 95 ~~~~~l~w~v~~~~~~~~i~~~~~liiP~iL~llDD-----~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~t--Gl~~v~ 167 (282)
T PF10521_consen 95 LASHVLSWIVLSQLDRPWISQHWPLIIPPILNLLDD-----YSPEIKIQGCQLLHHLLEKVPAAEWDILRRT--GLFSVF 167 (282)
T ss_pred ccHHHHHHHHHhcCCcchHHHhhhHHHhhHHHHhcC-----CCHHHHHHHHHHHHHHHHhCChhhhHHHHHc--ChHHHH
Confidence 33445555554 33 234555555566666666542 256788899999999999988777 4321 123333
Q ss_pred HHHHHHHHhcCC-CcccccCcchhhHHHHHHHHHhhhcC--CCcchHHHHHH-HHHHHHHHHHhcCC--CHHHHHHHHHH
Q 004389 628 VTPLQEIINQGP-EILQKKHPRDLTVHIDRFAYIFRYVN--HPEAVADAIQR-LWPIFKAIFDIRAW--DMRTMESLCRA 701 (757)
Q Consensus 628 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~-~~~~l~~~l~~~~~--~~~v~e~~~~~ 701 (757)
...+.+++---. ..+.++..........++-.+++... ...+-.....+ +-..+..-+..... +++++...+..
T Consensus 168 ~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~ 247 (282)
T PF10521_consen 168 EDALFPCLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQ 247 (282)
T ss_pred HHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHH
Confidence 333444443111 11112122222233344444433321 11111122222 22212222222223 58899999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 004389 702 CKYAVRTSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 702 ~~~~~~~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
+..+++.+|.+...++..++..+.+..+
T Consensus 248 l~~~i~~lGi~~~~hL~rii~~l~~~l~ 275 (282)
T PF10521_consen 248 LPPIIDELGISSVKHLQRIIPVLSQILE 275 (282)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988877443
No 146
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=39.89 E-value=7.3e+02 Score=29.69 Aligned_cols=221 Identities=14% Similarity=0.140 Sum_probs=121.7
Q ss_pred cccHHHHHhhcCCC----CC--hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Q 004389 489 AEVMPQVMALLPKL----PQ--QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHIC 562 (757)
Q Consensus 489 ~~~l~~l~~~l~~l----~~--~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~ 562 (757)
.+.+|.++..|.++ .+ ...|..+.+.++.-=+++-+...+ ...|-.++.+++.-.+|. |...+-..|..+|
T Consensus 525 ~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~s--kI~P~~i~lF~k~s~DP~-V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 525 LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMES--KICPLTINLFLKYSEDPQ-VASLAQDLFEELL 601 (1005)
T ss_pred cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhc--chhHHHHHHHHHhcCCch-HHHHHHHHHHHHH
Confidence 45566666655433 21 234555544444333334333333 477888888888878887 9999999999999
Q ss_pred HH--hhhhhc-CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCC
Q 004389 563 DD--CRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGP 639 (757)
Q Consensus 563 ~~--~~~~l~-p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~ 639 (757)
+. |...+. -.+|++++.+ +.+ .++.+.......++-+..++.+-|+.- .+ .+..-.+..+-+|+- .+
T Consensus 602 q~~~~~g~m~e~~iPslisil----~~~-~~~~~~~l~~~aidvLttvvr~tp~pL-~~---~l~~~~FpaVak~tl-Hs 671 (1005)
T KOG2274|consen 602 QIAANYGPMQERLIPSLISVL----QLN-ADKAPAGLCAIAIDVLTTVLRNTPSPL-PN---LLICYAFPAVAKITL-HS 671 (1005)
T ss_pred HHHHhhcchHHHHHHHHHHHH----cCc-ccccCchhhHHHHHHHHHHHhcCCCCc-cH---HHHHHHhHHhHhhee-ec
Confidence 73 333332 3445555444 321 123445556667777777788877552 22 233334444445552 11
Q ss_pred CcccccCcchhhHHHHHHHHHhhh----cCC--CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH----h
Q 004389 640 EILQKKHPRDLTVHIDRFAYIFRY----VNH--PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT----S 709 (757)
Q Consensus 640 ~~~~~~~~~~~~~~l~~l~~~~~~----~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~----~ 709 (757)
. + ...+...=++++.++.. +.. .+|-.. +.-+|.++.++| |++.-|.++.+.|+++.+ +
T Consensus 672 d--D---~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~-~~yImqV~sqLL-----dp~~sds~a~~VG~lV~tLit~a 740 (1005)
T KOG2274|consen 672 D--D---HETLQNATECLRALISVTLEQLLTWHDEPGHN-LWYIMQVLSQLL-----DPETSDSAAAFVGPLVLTLITHA 740 (1005)
T ss_pred C--C---hHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc-HHHHHHHHHHHc-----CCccchhHHHHHhHHHHHHHHHH
Confidence 1 1 11222233444444332 100 112112 455666666666 456677777788877664 4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhcCC
Q 004389 710 KRFMGITIGAILEEIQGLYQQHQQ 733 (757)
Q Consensus 710 ~~~~~p~l~~~~~~l~~~~~~~~~ 733 (757)
|..++|.+..++..++.-.+..+.
T Consensus 741 ~~el~~n~d~IL~Avisrmq~ae~ 764 (1005)
T KOG2274|consen 741 SSELGPNLDQILRAVISRLQQAET 764 (1005)
T ss_pred HHHhchhHHHHHHHHHHHHHHhhh
Confidence 667778777777777776666553
No 147
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=39.51 E-value=2.7e+02 Score=28.67 Aligned_cols=102 Identities=14% Similarity=0.255 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCh---hHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhc---CCCCCCh
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI---DAWQVADNLLHDATSNLETLIFCSQTLRSKVQR---DVEELPS 77 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~---~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~---~w~~l~~ 77 (757)
.+.|.+++..+-.-.........+.+|....++. ..|.+...|+..--...--.|| ...... .......
T Consensus 2 ~~~~~~~l~~f~~~k~~~l~~~L~~il~~ia~tg~~~~~W~~lk~l~~~kl~~v~~e~~-----~~~p~~~~~~~~~~~~ 76 (288)
T PF09184_consen 2 IEELLDALENFMKIKSKELPPELEDILEHIAKTGETWYPWSLLKSLFRHKLEKVIDEFF-----ESAPEESGPQNPNVEP 76 (288)
T ss_pred hHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHH-----hcCccccCCCCCCcch
Confidence 3567788888865556677788889998888764 3477776666531011111222 111111 1233445
Q ss_pred hhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 004389 78 EAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAA 111 (757)
Q Consensus 78 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~ 111 (757)
..+..+|..++.++..|.. |++...+||..+..
T Consensus 77 ~~~~~~~~~~~~~~~~f~~-~PfTiqRlcEl~~~ 109 (288)
T PF09184_consen 77 EDYEEMKERILELLDSFDE-PPFTIQRLCELLLD 109 (288)
T ss_pred hhHHHHHHHHHHHHHhcCC-CChhHHHHHHHHhC
Confidence 6788999999999998876 88999999987743
No 148
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=39.19 E-value=39 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHhhcccCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHH
Q 004389 469 PAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSK 521 (757)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~ 521 (757)
++-++|++++.++..-..- +.+.++.+++.... .+...+|.|++.++|-++.
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis~ 58 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLISS 58 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHhC
Confidence 4678999999998653221 23445555554332 2367899999999998764
No 149
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=39.18 E-value=2.2e+02 Score=26.02 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~ 86 (757)
+-.+++.+ .-.+++..+++.+.|..... -.-.-|+++|...-.+..||.||-..|+ ..++++....--+
T Consensus 41 lp~~L~sv-~w~~~~~~~e~~~lL~~W~~--~~~~~aL~LL~~~~~~~~vr~yAv~~L~--------~~~~~~l~~ylpQ 109 (152)
T cd00864 41 LPKLLKSV-NWNDDEEVSELYQLLKWWAP--LSPEDALELLSPKYPDPVVRQYAVRVLE--------SASDDELLLYLPQ 109 (152)
T ss_pred HHHHHHHc-cCCCHHHHHHHHHHHhcCCC--CCHHHHHHHcCCcCCCHHHHHHHHHHHH--------hCCHHHHHHHHHH
Confidence 34444444 23577777777777776532 2234677788653456778888877776 3455554443334
Q ss_pred HHHHH
Q 004389 87 LNTLL 91 (757)
Q Consensus 87 Ll~~l 91 (757)
|++.+
T Consensus 110 LVQaL 114 (152)
T cd00864 110 LVQAL 114 (152)
T ss_pred HHHHH
Confidence 44444
No 150
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=36.11 E-value=4e+02 Score=32.72 Aligned_cols=184 Identities=13% Similarity=0.091 Sum_probs=93.0
Q ss_pred hHHHHHHHHHhccCCC-----hHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTS-----EDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~-----~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~ 606 (757)
++....+++..+.++| +.++.+|..|+.+++--....-..+++-++..+.+- -++--|..++=|+|-
T Consensus 916 lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeks--------p~p~IRsN~VvalgD 987 (1251)
T KOG0414|consen 916 LLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKS--------PSPRIRSNLVVALGD 987 (1251)
T ss_pred HHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--------CCceeeecchheccc
Confidence 6666777776655332 239999999999998543333334455555554431 224456788888887
Q ss_pred HHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 004389 607 VITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD 686 (757)
Q Consensus 607 vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 686 (757)
+.-..| .+++|..+.|-.-+.... +.....++-+++.++-. ....+ ..-.+-+...+.
T Consensus 988 lav~fp---------nlie~~T~~Ly~rL~D~~-------~~vRkta~lvlshLILn-----dmiKV-KGql~eMA~cl~ 1045 (1251)
T KOG0414|consen 988 LAVRFP---------NLIEPWTEHLYRRLRDES-------PSVRKTALLVLSHLILN-----DMIKV-KGQLSEMALCLE 1045 (1251)
T ss_pred hhhhcc---------cccchhhHHHHHHhcCcc-------HHHHHHHHHHHHHHHHh-----hhhHh-cccHHHHHHHhc
Confidence 766655 334444433333333221 12223345555555432 01111 111222222333
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchHhhHHHHHHHhCCc
Q 004389 687 IRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPP 750 (757)
Q Consensus 687 ~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~~~~~~i~~f~~~ 750 (757)
. .+++|.+-+-.+|+- +..=|.-+..+||.++-++.+. .-.--+|-...+.++..-++|
T Consensus 1046 D--~~~~IsdlAk~FF~E-ls~k~n~iynlLPdil~~Ls~~--~l~~~~~~~vm~~li~~ikkd 1104 (1251)
T KOG0414|consen 1046 D--PNAEISDLAKSFFKE-LSSKGNTIYNLLPDILSRLSNG--NLEEESYKTVMEFLIGLIKKD 1104 (1251)
T ss_pred C--CcHHHHHHHHHHHHH-hhhcccchhhhchHHHHhhccC--cccchhhHHHHHHHHHHhccc
Confidence 2 345665554445444 3334566777777777777665 112223444445555444444
No 151
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=36.02 E-value=2.4e+02 Score=25.34 Aligned_cols=77 Identities=9% Similarity=0.113 Sum_probs=48.3
Q ss_pred hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHhhCcCCCCCChh--hHHHHHHHHHH
Q 004389 532 ILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY--LDGLYNVYRTAVNGEGSLKVSAE--DSLHLVEALSM 606 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~--l~~ll~~~~~l~~~~~~~~l~~~--~~~~l~eai~~ 606 (757)
.-..++..|-+.+.+++ .++..|-..+..+...|+..+... -..+++.+..++... ..... .+.++++-+..
T Consensus 39 ~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~---~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 39 GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSK---KTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHT---TTHHHSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccC---CCCchhHHHHHHHHHHHH
Confidence 44566777776665543 499999999999999998766532 234666666666542 11122 56666666655
Q ss_pred HHhcC
Q 004389 607 VITEL 611 (757)
Q Consensus 607 vi~~~ 611 (757)
-...+
T Consensus 116 W~~~f 120 (140)
T PF00790_consen 116 WAEAF 120 (140)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44444
No 152
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.88 E-value=1.1e+02 Score=34.04 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=65.0
Q ss_pred ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHhhhh
Q 004389 490 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKK 568 (757)
Q Consensus 490 ~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~-v~~~Aa~al~~l~~~~~~~ 568 (757)
..++..++.+..- .+++||+.....+|-++. +. =...++..|-..+.++.+ |+..|+.|..-|...|.+.
T Consensus 585 ~~lv~tvelLs~s-hN~hVR~g~AvaLGiaca----g~----G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 585 DLLVGTVELLSES-HNFHVRAGVAVALGIACA----GT----GDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred chhhHHHHHhhhc-cchhhhhhhHHHhhhhhc----CC----ccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 4466666665432 368999999999987653 11 134555655555667654 9999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhhC
Q 004389 569 LCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 569 l~p~l~~ll~~~~~l~~~ 586 (757)
|.|....|...+..++..
T Consensus 656 Lnp~v~~I~k~f~~vI~~ 673 (926)
T COG5116 656 LNPNVKRIIKKFNRVIVD 673 (926)
T ss_pred cChhHHHHHHHHHHHHhh
Confidence 999999999998888763
No 153
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=35.70 E-value=1.8e+02 Score=23.98 Aligned_cols=68 Identities=10% Similarity=0.128 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHhhHHHHhh-CCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHh-hhhhcCCHH
Q 004389 504 QQPQLLQTVCLTIGAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDC-RKKLCGYLD 574 (757)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~-~~~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~~-~~~l~p~l~ 574 (757)
.|-.+|.-+..+++..++-+.. +|. +-+.++..+.+.+.+|. ...--|-.+|..+-.+. +..+.|++.
T Consensus 18 ~h~~LRd~AA~lL~~I~~~~~~~~~~---L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~~vr~~ilP~l~ 90 (92)
T PF07571_consen 18 NHWALRDFAASLLAQICRKFSSSYPT---LQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPEAVRALILPNLK 90 (92)
T ss_pred chHHHHHHHHHHHHHHHHHhccccch---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 4889999999999999886653 343 77888998888887764 36667777787775554 334556653
No 154
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.42 E-value=7.5e+02 Score=28.53 Aligned_cols=126 Identities=9% Similarity=0.073 Sum_probs=70.4
Q ss_pred HHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc----CChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchh
Q 004389 575 GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE----LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDL 650 (757)
Q Consensus 575 ~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~----~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 650 (757)
..++.++++... ++++-...+++++..+.+. +...+..++ ++.++.+.+.+++++..-++....-..
T Consensus 255 stlqlfFdly~s-----lp~~~S~~alsclvqlASvRRsLFN~aeRa~y----l~~Lv~Gvk~il~np~~LsD~~nyHeF 325 (1082)
T KOG1410|consen 255 STLQLFFDLYHS-----LPPELSELALSCLVQLASVRRSLFNGAERAKY----LQHLVEGVKRILENPQGLSDPANYHEF 325 (1082)
T ss_pred hHHHHHHHHhcc-----CCchhhHHHHHHHHHHHHHHHHHhCCHHHHHH----HHHHHHHHHHHHhCCcCCCCcchHHHH
Confidence 456777777653 4455567777777776655 333333444 556677788888876643332222223
Q ss_pred hHHHHHHHHHhhhc--CCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 004389 651 TVHIDRFAYIFRYV--NHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 651 ~~~l~~l~~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 709 (757)
+..+.++..-.+-. -.-+....+++-+-..-..-++.|...+.=+--...++.+++...
T Consensus 326 CRllaRlktNYQL~ELv~v~~Y~e~irLiAeFTv~SLq~wefa~nSvyyLlt~WqRmvaSV 386 (1082)
T KOG1410|consen 326 CRLLARLKTNYQLGELVKVECYPEVIRLIAEFTVTSLQHWEFAPNSVYYLLTLWQRMVASV 386 (1082)
T ss_pred HHHHHHHHhhhhhHhhhccCCcHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHhcC
Confidence 33444443322210 012334456666666655667777655555566777788887754
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.80 E-value=4.7e+02 Score=27.51 Aligned_cols=93 Identities=18% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHhc---------ChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHH--
Q 004389 17 HPDDAVRMQADRWLQDFQH---------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQD-- 85 (757)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~---------s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~-- 85 (757)
+.|++.+..|-.-|+.+-. +-++|..+...+. +.+.++|-.||.++-..++++ |.-+-..+..
T Consensus 94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~--~~~~~lR~~Aa~Vigt~~qNN----P~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE--NSDAELRELAARVIGTAVQNN----PKSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc--CCcHHHHHHHHHHHHHHHhcC----HHHHHHHHHccc
Confidence 4578889888877776654 3456777777665 467899999999999999976 4434333333
Q ss_pred --HHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc
Q 004389 86 --SLNTLLKKFHKGPPKVRTQISIAVAALAVHIS 117 (757)
Q Consensus 86 --~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~ 117 (757)
.|+..+. +++|..+|+|.--+++.+..+..
T Consensus 168 L~~Ll~~ls--~~~~~~~r~kaL~AissLIRn~~ 199 (342)
T KOG2160|consen 168 LSKLLKILS--SDDPNTVRTKALFAISSLIRNNK 199 (342)
T ss_pred HHHHHHHHc--cCCCchHHHHHHHHHHHHHhcCc
Confidence 3333333 24677888998888888776543
No 156
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=34.41 E-value=1.4e+02 Score=25.93 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=42.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhc-ChhHHHHH---------HHHhhcCCCChHHHHHHHHHHHHHhhcCCC
Q 004389 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH-TIDAWQVA---------DNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (757)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~-s~~aw~~~---------~~lL~~~~~~~~vr~faa~~L~~ki~~~w~ 73 (757)
.+...+..|..+.|+....-|=.-|.+|-+ .|.+-.++ ..|+.+ .+++||+-|..++...+..+|.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~~w~ 119 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKLMVNNWE 119 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhcCC
Confidence 345555555455577766666666666544 56665544 566654 6889999999999999998884
No 157
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.84 E-value=3.6e+02 Score=24.34 Aligned_cols=75 Identities=8% Similarity=0.150 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l--~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..++..+-+-+.+++ .++.+|-..+..+.+.|+..+...+ ..+++.+..++.. ..+...+.++++-|-.-...
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~----~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT----TKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc----cCCHHHHHHHHHHHHHHHHH
Confidence 455666655554432 3999999999999999988665322 3366666666543 23455566666655544444
Q ss_pred CC
Q 004389 611 LP 612 (757)
Q Consensus 611 ~~ 612 (757)
++
T Consensus 116 f~ 117 (142)
T cd03569 116 FR 117 (142)
T ss_pred hC
Confidence 43
No 158
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.89 E-value=82 Score=21.93 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 004389 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQD 32 (757)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~ 32 (757)
|+.-+.-...|+.+...+|+..+.+|.+.|.+
T Consensus 12 ~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 12 MGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred cCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44445555556655556677777777777654
No 159
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=31.88 E-value=8.7e+02 Score=28.22 Aligned_cols=18 Identities=11% Similarity=-0.014 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 004389 690 WDMRTMESLCRACKYAVR 707 (757)
Q Consensus 690 ~~~~v~e~~~~~~~~~~~ 707 (757)
.+++|+-...+++..++.
T Consensus 479 ~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 479 RDPAIVMGFLRIYEALAL 496 (700)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 456666666666655544
No 160
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.84 E-value=1.6e+02 Score=30.87 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=46.1
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHh
Q 004389 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (757)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~ 565 (757)
+|-++..++. .++.+++.++..||..+---.+..-..+--|.+++.+.+.++++. +++-.|+.|++.+..+.
T Consensus 210 lpvLVsll~s--~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt 282 (550)
T KOG4224|consen 210 LPVLVSLLKS--GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT 282 (550)
T ss_pred chhhhhhhcc--CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc
Confidence 4555544432 378899999998887754222211000123566777777777754 59999999999998654
No 161
>PF09384 UTP15_C: UTP15 C terminal; InterPro: IPR018983 This entry represents the C-terminal domain of the U3 small nucleolar RNA-associated protein 15 (UTP15). This protein is involved in nucleolar processing of pre-18S ribosomal RNA, and is required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). UTP15 is a component of the ribosomal small subunit (SSU) processome, which is a large ribonucleoprotein (RNP) required for processing of precursors to the small subunit RNA, the 18S, of the ribosome [, ]. This domain is found C-terminal to the WD40 repeat (IPR001680 from INTERPRO). UTP15 associates with U3 snoRNA, which is ubiquitous in eukaryotes and is required for nucleolar processing of pre-18S ribosomal RNA []. ; GO: 0006364 rRNA processing, 0005730 nucleolus
Probab=30.66 E-value=2.5e+02 Score=25.55 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhc--CCHHHHHHHHHHHh
Q 004389 531 SILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC--GYLDGLYNVYRTAV 584 (757)
Q Consensus 531 ~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~--p~l~~ll~~~~~l~ 584 (757)
..+.+++.|+.+.+.+|. ...-...+...+.+-+.+.+. |.+...+..+...+
T Consensus 74 ~~L~piL~Fl~k~i~~pr-~~~~l~~v~~~ildiY~~~~~~s~~v~~~~~~L~~~v 128 (148)
T PF09384_consen 74 ESLEPILKFLIKNITDPR-YTRILVDVANIILDIYSPVIGQSPEVDKLFQKLQRKV 128 (148)
T ss_pred HHHHHHHHHHHHhCCCcc-cHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 378999999999999987 555555555556655555555 33444555554444
No 162
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=30.16 E-value=5.3e+02 Score=25.22 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=36.4
Q ss_pred hhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 004389 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (757)
Q Consensus 566 ~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~ 616 (757)
++.+..|++-++-.+......+ .++.+.+..+..|+=+++..++.++.
T Consensus 146 k~~~~kh~~~lL~~Yi~~~~~~---~l~~~vr~~L~pGiy~l~d~~s~~e~ 193 (223)
T PF10441_consen 146 KKSLRKHAPYLLANYISLQLKY---TLPPEVREALMPGIYALFDVCSQHEL 193 (223)
T ss_pred HHHHHhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3456678888776665555433 48899999999999999999886663
No 163
>PF05536 Neurochondrin: Neurochondrin
Probab=30.06 E-value=8.7e+02 Score=27.64 Aligned_cols=135 Identities=13% Similarity=0.155 Sum_probs=76.9
Q ss_pred hhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHh-----hCCCCchhHHHHHH
Q 004389 469 PAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD-----AASSDPSILASVLS 538 (757)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~-----~~~~~~~~l~~~l~ 538 (757)
-.+=++.++.+++ .-+.+. ...++.+.+.+++ ++.....++.++........ .++ +.+..+++
T Consensus 115 ~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~---~~~~~E~Al~lL~~Lls~~~~~~~~~~~---~~l~~il~ 187 (543)
T PF05536_consen 115 TVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN---QSFQMEIALNLLLNLLSRLGQKSWAEDS---QLLHSILP 187 (543)
T ss_pred HHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh---CcchHHHHHHHHHHHHHhcchhhhhhhH---HHHHHHHH
Confidence 3456777777777 222221 2445666665544 45555555555444433332 222 25566666
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hh---cCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcC
Q 004389 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRK---KL---CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (757)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---~l---~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (757)
.+.+.+.... ..+..++.-+..|-..+.. .. ..+...+...+.+++++ +++...|.......+.++...
T Consensus 188 ~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s----r~~~~~R~~al~Laa~Ll~~~ 263 (543)
T PF05536_consen 188 SLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS----RLTPSQRDPALNLAASLLDLL 263 (543)
T ss_pred HHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHh
Confidence 6654443221 1345556666666655521 11 14788888899999876 577888888888877777775
Q ss_pred ChH
Q 004389 612 PQV 614 (757)
Q Consensus 612 ~~e 614 (757)
+.+
T Consensus 264 G~~ 266 (543)
T PF05536_consen 264 GPE 266 (543)
T ss_pred ChH
Confidence 543
No 164
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=29.97 E-value=3.2e+02 Score=22.56 Aligned_cols=83 Identities=22% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc
Q 004389 40 WQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE 119 (757)
Q Consensus 40 w~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~ 119 (757)
..-+..-|++ ..+.+|-.|..+|++-|.++- .+..+...+-.-++..+.. ..++|-=.-...++.++-..+
T Consensus 5 ~~~al~~L~d--p~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d---~DsyVYL~aI~~L~~La~~~p-- 75 (92)
T PF10363_consen 5 LQEALSDLND--PLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKD---EDSYVYLNAIKGLAALADRHP-- 75 (92)
T ss_pred HHHHHHHccC--CCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHHHHCh--
Confidence 3445556654 356799999999999999874 3333444444444444333 567776666777888875433
Q ss_pred ccCCccchHHHHHhcC
Q 004389 120 DWGGGGIVNWLRDEMN 135 (757)
Q Consensus 120 ~W~~~~~~~~l~~~~~ 135 (757)
+. .++.+++...
T Consensus 76 ---~~-vl~~L~~~y~ 87 (92)
T PF10363_consen 76 ---DE-VLPILLDEYA 87 (92)
T ss_pred ---HH-HHHHHHHHHh
Confidence 21 5666665543
No 165
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=29.83 E-value=4e+02 Score=23.65 Aligned_cols=75 Identities=9% Similarity=0.071 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHh
Q 004389 533 LASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVIT 609 (757)
Q Consensus 533 l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l--~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~ 609 (757)
-..++..+.+.+.+++ .++.+|-..+..+...|+..+...+ ..+++.+..++.... .....+.++++-+..-..
T Consensus 35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~---~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY---PLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC---CcHHHHHHHHHHHHHHHH
Confidence 3456666666665543 4999999999999999988665332 336676666665421 111244555554444333
Q ss_pred c
Q 004389 610 E 610 (757)
Q Consensus 610 ~ 610 (757)
.
T Consensus 112 ~ 112 (133)
T smart00288 112 A 112 (133)
T ss_pred H
Confidence 3
No 166
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.78 E-value=3.2e+02 Score=31.65 Aligned_cols=87 Identities=18% Similarity=0.327 Sum_probs=55.0
Q ss_pred cHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH-HHHHHHHHHHHHHHHhhhhh
Q 004389 491 VMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TAAAAALAFRHICDDCRKKL 569 (757)
Q Consensus 491 ~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~-v~~~Aa~al~~l~~~~~~~l 569 (757)
.++.+++.|.. ..+|+||+.+.-.+|-.+. .. =+..+++.|-..+.+|.+ ||..|..|+.-|.-.|.+.+
T Consensus 589 ~~~s~V~lLse-s~N~HVRyGaA~ALGIaCA----Gt----G~~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~ 659 (929)
T KOG2062|consen 589 QLPSTVSLLSE-SYNPHVRYGAAMALGIACA----GT----GLKEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL 659 (929)
T ss_pred hchHHHHHHhh-hcChhhhhhHHHHHhhhhc----CC----CcHHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence 34555555442 1257788877777776553 11 134555555444555553 77778777777777777778
Q ss_pred cCCHHHHHHHHHHHhhC
Q 004389 570 CGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 570 ~p~l~~ll~~~~~l~~~ 586 (757)
.|....+.+.+.+++..
T Consensus 660 ~pkv~~frk~l~kvI~d 676 (929)
T KOG2062|consen 660 CPKVNGFRKQLEKVIND 676 (929)
T ss_pred CchHHHHHHHHHHHhhh
Confidence 88888887777777653
No 167
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=29.54 E-value=6.3e+02 Score=26.40 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhh
Q 004389 532 ILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKL 569 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l 569 (757)
+..++.+.|++....++ +...++.++..+|.+++..+
T Consensus 2 ~y~~l~~ll~~~~~~~~-~~~s~~~~l~~v~~~~~~~~ 38 (315)
T cd05128 2 YYQPLRDLLLESVDVGP-ISASAAAILEEVCREERQDV 38 (315)
T ss_pred CcHHHHHHHHcccccCC-CChhHHHHHHHhCcHHHHHH
Confidence 34566777776665444 67788888888887554443
No 168
>PF05233 PHB_acc: PHB accumulation regulatory domain; InterPro: IPR007897 The proteins this domain is found in are typically involved in regulating polymer accumulation in bacteria, for example the production of poly-beta-hydroxybutyrate (PHB) which is formed via the polymerisation of D(-)-3-hydroxybutyryl-CoA []. The function of this domain is unknown.
Probab=29.08 E-value=1.2e+02 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Q 004389 700 RACKYAVRTSKRFMGITIGAILEEIQGLYQQ 730 (757)
Q Consensus 700 ~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~ 730 (757)
.+++.+++..|+.+..++|..++.-.+.|..
T Consensus 4 ~~L~qlIrfyg~~mQ~~m~~YLEqS~~~f~~ 34 (41)
T PF05233_consen 4 EFLRQLIRFYGPSMQGMMGSYLEQSMQMFAE 34 (41)
T ss_pred HHHHHHHHHcchhHHHHHHHHHHHHHHHHHH
Confidence 4788899999999999999999988877754
No 169
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.67 E-value=3.2e+02 Score=22.15 Aligned_cols=71 Identities=7% Similarity=0.084 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchHhhHHHHH
Q 004389 672 DAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVI 744 (757)
Q Consensus 672 ~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~~~~~~i 744 (757)
.+-+.++..+..++.+ ..+.+|+|.+..|+..++...|+.+..--+.++..+...... +.......+-+++
T Consensus 13 ~fQ~~fL~Pf~~i~~~-~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~-~~e~lv~~af~~~ 83 (86)
T PF09324_consen 13 NFQKDFLKPFEYIMSN-NPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKD-NDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 3456677777777754 367999999999999999999999888777777777665543 3455555555544
No 170
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=27.56 E-value=3.7e+02 Score=22.63 Aligned_cols=56 Identities=9% Similarity=-0.069 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHH
Q 004389 668 EAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQ 725 (757)
Q Consensus 668 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~p~l~~~~~~l~ 725 (757)
+.+.+.+..++..+...|++. +++|++.+..++..++..+++. +......+++...
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi--~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~ 59 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHI--SPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFL 59 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhC--CHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHH
Confidence 455677888888888888885 5899999999999999988877 3333333444333
No 171
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=8.7e+02 Score=26.87 Aligned_cols=163 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC--CCCChHHHHH
Q 004389 433 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP--KLPQQPQLLQ 510 (757)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~--~l~~~~~l~~ 510 (757)
+..-+...++..+..++.+...+.. +..|..+-.-.-.+..+...-.-.....+..++.++. .-.+...+|.
T Consensus 203 lqr~m~~~~~~~~~~il~q~~ss~t------s~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~ka~dp~a~~r~ 276 (533)
T KOG2032|consen 203 LQRFMACVQDLEMGKILAQLLSSIT------SEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLANKATDPSAKSRG 276 (533)
T ss_pred HHHHHHhhCCccHHHHHhhcccccc------hhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHHhccCchhHHHH
Q ss_pred HHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHhhCc
Q 004389 511 TVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVYRTAVNGE 587 (757)
Q Consensus 511 t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~-~~~l~p~l~~ll~~~~~l~~~~ 587 (757)
.+|..+|..+..-.+--- .+-+.++..+..|+-++. +|+-.|-.++..+.+.. ...+.+|+-.+--.+.++...
T Consensus 277 ~a~r~L~~~as~~P~kv~--th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~s- 353 (533)
T KOG2032|consen 277 MACRGLGNTASGAPDKVR--THKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDS- 353 (533)
T ss_pred HHHHHHHHHhccCcHHHH--HhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHh-
Q ss_pred CCCCCChhhHHHHHHHHHHHH
Q 004389 588 GSLKVSAEDSLHLVEALSMVI 608 (757)
Q Consensus 588 ~~~~l~~~~~~~l~eai~~vi 608 (757)
...+-|...+-..|.+.
T Consensus 354 ----e~~~~R~aa~~Lfg~L~ 370 (533)
T KOG2032|consen 354 ----EDDKMRAAAFVLFGALA 370 (533)
T ss_pred ----cChhhhhhHHHHHHHHH
No 172
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=26.49 E-value=4e+02 Score=24.93 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=5.9
Q ss_pred chHHHHHhcCCC
Q 004389 126 IVNWLRDEMNSH 137 (757)
Q Consensus 126 ~~~~l~~~~~~~ 137 (757)
+..+|+++.-.+
T Consensus 124 La~FLl~Ral~n 135 (171)
T cd00872 124 LVRFLLKRALRN 135 (171)
T ss_pred HHHHHHHHHhcC
Confidence 455555544333
No 173
>PF05536 Neurochondrin: Neurochondrin
Probab=26.24 E-value=1e+03 Score=27.13 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=46.1
Q ss_pred cCChHHHHHHHHHHHHhHHHHHHHHHHhhhh----hHHHHHHHHHHHHHhhccCCCCCccc-ccchhHHHHHhcc
Q 004389 161 AARPERRRQFEKELTSQMEVALSTLTACLHI----NELKEQVLEAFASWLRLKHRIPGSVL-ASHPLVLTALSSL 230 (757)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~----~~~~~~~l~~l~~wi~~~~~~~~~~l-~~~~ll~~~~~~L 230 (757)
.+.++...++++.|.+.+..|+++|...-.+ +.....+++++.+|+.- -+...- ...++++.++...
T Consensus 338 ~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaE---e~~~lr~~v~~Ll~~ll~~~ 409 (543)
T PF05536_consen 338 DLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAE---ETSALRKEVYGLLPFLLSLY 409 (543)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHH
Confidence 3456777889999999999999999876553 23677889999999984 232211 2345555555543
No 174
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=25.76 E-value=6.9e+02 Score=25.11 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhcChhH-H-------HHHHHHhhcCCCChHHHHHHHHHHHHH
Q 004389 10 ALNALYHHPDDAVRMQADRWLQDFQHTIDA-W-------QVADNLLHDATSNLETLIFCSQTLRSK 67 (757)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s~~a-w-------~~~~~lL~~~~~~~~vr~faa~~L~~k 67 (757)
.|..+.+.+++..|.+|-.-|..+-.+.+. + .+|..+... ..+.+++.-|...|.+.
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nL 122 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNL 122 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHcc
Confidence 355555677888888787777765543322 1 233444433 23456666677777665
No 175
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.72 E-value=4.2e+02 Score=28.20 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred hHHHhhhhhcChh-----HHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhc
Q 004389 431 DVLIDAASVLGGD-----ATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALL 499 (757)
Q Consensus 431 d~l~~~~~~l~~~-----~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l 499 (757)
+.+.++|..++.+ .++..+...+. ..+-.-+=-+|-++.++...|... ...+...+..++
T Consensus 27 ~~IlDvCD~v~~~~~~~kd~lk~i~KRln---------~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~ 97 (462)
T KOG2199|consen 27 SLILDVCDKVGSDPDGGKDCLKAIMKRLN---------HKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALI 97 (462)
T ss_pred HHHHHHHHhhcCCCcccHHHHHHHHHHhc---------CCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHH
Q ss_pred CCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 500 PKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 500 ~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
.+ ..|+.|+...-.++...++-+++.|+.. ++..+...+
T Consensus 98 ~~-~~h~kV~~k~~~lv~eWsee~K~Dp~ls-Li~~l~~kl 136 (462)
T KOG2199|consen 98 ES-KAHPKVCEKMRDLVKEWSEEFKKDPSLS-LISALYKKL 136 (462)
T ss_pred hh-cccHHHHHHHHHHHHHHHHHhccCcchh-HHHHHHHHH
No 176
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.58 E-value=6.4e+02 Score=26.12 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~ 580 (757)
+-....-.+..|.+++.|-...- ...|..++-.+++.+.++. .|...|+.++..+.+....++...++.++..+
T Consensus 101 dW~~~vdgLn~irrLs~fh~e~l--~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~L 175 (334)
T KOG2933|consen 101 DWEDKVDGLNSIRRLSEFHPESL--NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQL 175 (334)
T ss_pred HHHHHhhhHHHHHHHHhhhHHHH--HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666667766666543210 0245666667778888876 58888888888888877776666555555444
No 177
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=25.51 E-value=4.7e+02 Score=30.85 Aligned_cols=118 Identities=8% Similarity=0.090 Sum_probs=0.0
Q ss_pred hhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCC
Q 004389 425 MLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQ 504 (757)
Q Consensus 425 ~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~ 504 (757)
++.|+..++..+ ..| +.+-..+.+.+.... +.+-+-+--+-+-+-..++.=+...--.++.+..-+. .+
T Consensus 36 kidAmK~iIa~M--~~G-~dmssLf~dViK~~~------trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~--d~ 104 (757)
T COG5096 36 KIDAMKKIIAQM--SLG-EDMSSLFPDVIKNVA------TRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQ--DP 104 (757)
T ss_pred HHHHHHHHHHHH--hcC-CChHHHHHHHHHHHH------hcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhcc--CC
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHI 561 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l 561 (757)
++.+|..+++++|.... ++ +++.++..+.++++++. .||..|+.|+.++
T Consensus 105 N~~iR~~AlR~ls~l~~-----~e---l~~~~~~~ik~~l~d~~ayVRk~Aalav~kl 154 (757)
T COG5096 105 NEEIRGFALRTLSLLRV-----KE---LLGNIIDPIKKLLTDPHAYVRKTAALAVAKL 154 (757)
T ss_pred CHHHHHHHHHHHHhcCh-----HH---HHHHHHHHHHHHccCCcHHHHHHHHHHHHHH
No 178
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=25.31 E-value=1.2e+03 Score=29.37 Aligned_cols=99 Identities=12% Similarity=0.022 Sum_probs=64.4
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChH-HH-HHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Q 004389 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSED-TA-AAAALAFRHICDDCRKKLCGYLDGLYNVYR 581 (757)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~-v~-~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~ 581 (757)
.|+.+|+++..+||.+.+--.. ..+..+++-+...+..... ++ ..|-..+..+|......+.||.+=++-.+.
T Consensus 828 ~~~a~r~~~ar~i~~~~k~~~~-----e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pll 902 (1549)
T KOG0392|consen 828 IHIAVRYAAARCIGTMFKSATR-----ETMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLL 902 (1549)
T ss_pred chHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhh
Confidence 4899999999999987653322 2556666666555554332 33 344455667777777778898887777766
Q ss_pred HHhhCcCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 582 TAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 582 ~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
...+.. ....|...-++.+.+|-.+|
T Consensus 903 r~msd~-----~d~vR~aat~~fa~lip~~~ 928 (1549)
T KOG0392|consen 903 RRMSDQ-----IDSVREAATKVFAKLIPLLP 928 (1549)
T ss_pred cccccc-----hHHHHHHHHHHHHHHhcccc
Confidence 655421 23446777777777776654
No 179
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=25.12 E-value=4.8e+02 Score=23.06 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=49.5
Q ss_pred HHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH-H-HHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-D-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l-~-~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..++..|-+.+.+++ .++.+|-..+..+...|+..+...+ . .+++.+..++... ...+.+.+..+++-+..-...
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~--~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS--PKYDPKVREKALELILAWSES 113 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHHHH
Confidence 455666655554433 3999999999999999988665332 2 4555566666532 134566777777777655555
Q ss_pred CCh
Q 004389 611 LPQ 613 (757)
Q Consensus 611 ~~~ 613 (757)
++.
T Consensus 114 f~~ 116 (133)
T cd03561 114 FGG 116 (133)
T ss_pred hcC
Confidence 543
No 180
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=24.72 E-value=1.5e+02 Score=20.86 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 004389 78 EAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAV 114 (757)
Q Consensus 78 e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~ 114 (757)
.+...+|+-+++++.. ..+..+.++..+|+.+..
T Consensus 3 ~~~eYLKNvl~~fl~~---~~~~~~~~llpvi~tlL~ 36 (46)
T PF01465_consen 3 INLEYLKNVLLQFLES---REPSEREQLLPVIATLLK 36 (46)
T ss_dssp HHHHHHHHHHHHHHTT---SS---HHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHhcC---CchhhHHHHHHHHHHHHC
Confidence 4678899999999876 346778889999988853
No 181
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=24.71 E-value=3.2e+02 Score=25.47 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 004389 18 PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (757)
Q Consensus 18 ~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~ 65 (757)
.++.+.++|.+.|.+... -.-.-|++||...-.+..||.||-..|+
T Consensus 58 ~~~~e~~e~~~lL~~W~~--i~~~~aLeLL~~~f~~~~VR~yAV~~L~ 103 (166)
T cd00870 58 SDEQEVKQALELMPKWAK--IDIEDALELLSPYFTNPVVRKYAVSRLK 103 (166)
T ss_pred CCHHHHHHHHHHHhcCCC--CCHHHHHHHcCccCCCHHHHHHHHHHHH
Confidence 356666666666665532 2234567777643345667777776666
No 182
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.10 E-value=7e+02 Score=24.55 Aligned_cols=144 Identities=15% Similarity=0.179 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHhhcccCcc--ccccHHHHHhhcCCCCCh--HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc-
Q 004389 469 PAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG- 543 (757)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~~l~~~--~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~- 543 (757)
+.+...+++..+..+--.. ..+.+..++.-+..+|.+ ..+...++..|-.=. ..+.....++|.++..+...
T Consensus 5 r~~v~~~~l~~l~~~~l~~k~~~dii~~L~~El~~lp~~~Lv~l~~~~v~~i~~g~---~~~~~~ldLlP~~Ls~L~~~~ 81 (223)
T PF14675_consen 5 RFKVYKCCLKLLESGDLSEKQASDIIGRLMLELHSLPGEHLVELAELCVDSIRSGD---NKNGKWLDLLPKCLSALSASE 81 (223)
T ss_dssp HHHHHHHHHHHHHHS---HHHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHHHS------S-STTTTHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHcccCCcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---cccchHHHHHHHHHHHHhcCc
Confidence 3455555665554321111 123344444445666632 233333333332100 01122235899999887543
Q ss_pred -cCCCh---HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 004389 544 -MSTSE---DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (757)
Q Consensus 544 -l~~~~---~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~ 619 (757)
+.... .-...-...+.++|..--+ .+++..+...+.++ .++.++...+++-+...+..++..+.++.
T Consensus 82 ~i~~~~~~~sG~eyK~~iI~~lc~~~W~--~~~l~~l~~mfrd~-------~Ls~~e~~~vv~Kv~~~l~~l~l~elPpL 152 (223)
T PF14675_consen 82 SINYNGGELSGEEYKKQIINSLCSSRWP--PQILIQLASMFRDV-------PLSKEELEFVVEKVLSMLKKLDLQELPPL 152 (223)
T ss_dssp --SSSS----HHHHHHHHHHHHHHS-----TTTHHHHHHHGGGS----------HHHHHHHHHHHHHHHTTS-GGGHHHH
T ss_pred ccccccccccchHHHHHHHHHHHhCcCc--HHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHHHhcCChhhccHH
Confidence 21111 1223344455666642211 12333344443332 47889999999999999999999998877
Q ss_pred HHHhh
Q 004389 620 LEMLC 624 (757)
Q Consensus 620 l~~l~ 624 (757)
.-+++
T Consensus 153 vyQLL 157 (223)
T PF14675_consen 153 VYQLL 157 (223)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66655
No 183
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.87 E-value=5.5e+02 Score=31.65 Aligned_cols=89 Identities=17% Similarity=0.282 Sum_probs=42.6
Q ss_pred hhhHHHhhhh---hcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCCh
Q 004389 429 VADVLIDAAS---VLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQ 505 (757)
Q Consensus 429 ~~d~l~~~~~---~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~ 505 (757)
..|.+..+|. ..|+..++..+...+.+.+.+.+. ..+..-.-||-.+++.+.---.+=..+.++-+|..+.+-| .
T Consensus 897 ~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~-~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp-~ 974 (1251)
T KOG0414|consen 897 LADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGL-FSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSP-S 974 (1251)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCc-CCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-C
Confidence 4455555543 346577888788777776644332 2232223455555553321111112344566665543322 4
Q ss_pred HHHHHHHHHHHHhh
Q 004389 506 PQLLQTVCLTIGAY 519 (757)
Q Consensus 506 ~~l~~t~~~~ig~~ 519 (757)
|.+|.++.-.+|.+
T Consensus 975 p~IRsN~VvalgDl 988 (1251)
T KOG0414|consen 975 PRIRSNLVVALGDL 988 (1251)
T ss_pred ceeeecchheccch
Confidence 55555444444433
No 184
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=23.71 E-value=2.5e+02 Score=20.40 Aligned_cols=36 Identities=22% Similarity=0.384 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHH
Q 004389 78 EAVRGLQDSLNTLLKKFHK-GPPKVRTQISIAVAALA 113 (757)
Q Consensus 78 e~~~~lr~~Ll~~l~~~~~-~~~~v~~kL~~~la~l~ 113 (757)
++-..+-+.|.+.|..... -++-+|.+++.+|..+-
T Consensus 11 ~~~~~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLR 47 (52)
T PF08158_consen 11 KETKDFPQELIDLLRNHHTVLDPDLRMKLVKALILLR 47 (52)
T ss_pred HHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 3555666777887777543 36789999999987764
No 185
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.70 E-value=1.2e+03 Score=27.18 Aligned_cols=130 Identities=16% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc----------cccc-----HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCC
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVV----------EAEV-----MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS 528 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~----------~~~~-----l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~ 528 (757)
+-+|- +++.|-.++--++.++++ +++- -..+++.+.+-..|..+.+..-+++|.|+..+..+|.
T Consensus 438 Dy~Wy-VdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~mVKvggyiLGEfg~LIa~~pr 516 (938)
T KOG1077|consen 438 DYSWY-VDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENMVKVGGYILGEFGNLIADDPR 516 (938)
T ss_pred Ccchh-HHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhhhhhcCCCC
Confidence 45786 889998888777666543 1111 2445666654445888889999999999999999886
Q ss_pred CchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHH
Q 004389 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (757)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~ 605 (757)
.. -...+..+-+.++... ..+..--...-+|+. +.|.+..-++.+++...+ .++.+-+.+.+|=+-
T Consensus 517 ss--~~~qFsllh~K~~~~s~~tr~lLLtTyiKl~n-----l~PEi~~~v~~vFq~~~n----~~D~ElQqRa~EYLq 583 (938)
T KOG1077|consen 517 SS--PAVQFSLLHEKLHLCSPVTRALLLTTYIKLIN-----LFPEIKSNVQKVFQLYSN----LIDVELQQRAVEYLQ 583 (938)
T ss_pred CC--hHHHHHHHHHHhccCChhHHHHHHHHHHHHHh-----hChhhhHHHHHHHHhhcc----cCCHHHHHHHHHHHH
Confidence 31 1223334434443322 122222233334433 236566555555554433 356676766666554
No 186
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=23.43 E-value=4.9e+02 Score=22.95 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhhHHHH--hhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhh----------------
Q 004389 506 PQLLQTVCLTIGAYSKWF--DAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRK---------------- 567 (757)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l--~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~---------------- 567 (757)
+.|+...+.++..++... ..-|+ +++.+++.+ ..........-..|..+.++..+
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~Wp~---~l~~l~~~~----~~~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~ 74 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQWPD---FLEDLLQLL----QSSPQHLELVLRILRILPEEITDFRRSSLSQERRRELKD 74 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSTT---HHHHHHHHH----HTTHHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhCch---HHHHHHHHh----ccchhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHH
Confidence 567788888888877644 22232 555555444 33221344455555666655432
Q ss_pred hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 004389 568 KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (757)
Q Consensus 568 ~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~ 616 (757)
.+....+.+++.+.++++.... ....+....+++++++.+..++.+..
T Consensus 75 ~l~~~~~~i~~~l~~~l~~~~~-~~~~~~~~~~L~~l~s~i~~~~~~~i 122 (148)
T PF08389_consen 75 ALRSNSPDILEILSQILSQSSS-EANEELVKAALKCLKSWISWIPIELI 122 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH-CCHHHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHHHhCCHHHh
Confidence 2334456666666666654210 00145566777777777777664443
No 187
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.31 E-value=2.6e+02 Score=26.93 Aligned_cols=63 Identities=11% Similarity=0.081 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---cchHhhHHHHHHHhCCccccc
Q 004389 692 MRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKVVFPPEVLA 754 (757)
Q Consensus 692 ~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~~~~~~i~~f~~~~~~~ 754 (757)
...-+.+..++..++..+|....|++.+++..+.+....... ...=.+++..|...|.+.++.
T Consensus 14 ~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~ 79 (198)
T PF08161_consen 14 QHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS 79 (198)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH
Confidence 455678888999999999999999999999998887766442 224567777888888776554
No 188
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=23.18 E-value=6.5e+02 Score=23.86 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHHHHHhhCcCCC--------CCChhhHHHHHHHHHHHHhcCCh-----H
Q 004389 549 DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVYRTAVNGEGSL--------KVSAEDSLHLVEALSMVITELPQ-----V 614 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~-~~~l~p~l~~ll~~~~~l~~~~~~~--------~l~~~~~~~l~eai~~vi~~~~~-----e 614 (757)
++|..|..++..+++.+ ++.+..|...++--- .....+... .-+...|......++.++..... +
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~-~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDS-VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCC-CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 37889999999999984 445556665554221 000000000 11345566666666666666321 1
Q ss_pred HHH------HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcch-HHHHHHHHHHHHHHHHh
Q 004389 615 DAK------KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAV-ADAIQRLWPIFKAIFDI 687 (757)
Q Consensus 615 ~~~------~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~ 687 (757)
+.. ..+..-+..++..+...+-..... +.........+++++.++....= +.+ .+++..++..+...+.+
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~--E~~~~~l~q~lK~la~Lv~~tPY-~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQA--EKSPPVLTQLLKCLAVLVQATPY-HRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHHHccCCh-hhcCHhHHHHHHHHHHHHHhc
Confidence 000 012222333333333322211110 01223445677777777765431 111 24555666666665655
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q 004389 688 RAWDMRTMESLCRACKYAVR 707 (757)
Q Consensus 688 ~~~~~~v~e~~~~~~~~~~~ 707 (757)
.|.++.-....+++.++.
T Consensus 157 --~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 157 --RDPNVRVAALSCLGALLS 174 (182)
T ss_pred --CCCcHHHHHHHHHHHHHc
Confidence 567777777777776554
No 189
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.49 E-value=4e+02 Score=30.80 Aligned_cols=105 Identities=12% Similarity=0.151 Sum_probs=63.0
Q ss_pred ccHHHHHhhcCCC-C-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC--ChHHHHHHHHHHHHHHHHh
Q 004389 490 EVMPQVMALLPKL-P-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST--SEDTAAAAALAFRHICDDC 565 (757)
Q Consensus 490 ~~l~~l~~~l~~l-~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~Aa~al~~l~~~~ 565 (757)
+.+..++.++.+. . ....||.+.|.+|....+-...-++ .....+...+...+-+ |. |+..|..||.++=.+-
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd--~vfn~l~e~l~~Rl~Drep~-VRiqAv~aLsrlQ~d~ 157 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDD--DVFNKLNEKLLIRLKDREPN-VRIQAVLALSRLQGDP 157 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCH--HHHHHHHHHHHHHHhccCch-HHHHHHHHHHHHhcCC
Confidence 3677777776533 2 3678999999999988874444343 2455555555544433 55 9999999999886433
Q ss_pred hhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHH
Q 004389 566 RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (757)
Q Consensus 566 ~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~ 605 (757)
...=.| +.+.+..++++. .+.+.|..++-.|.
T Consensus 158 ~dee~~----v~n~l~~liqnD----pS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 158 KDEECP----VVNLLKDLIQND----PSDEVRRAALSNIS 189 (892)
T ss_pred CCCccc----HHHHHHHHHhcC----CcHHHHHHHHHhhc
Confidence 332223 334444444441 34556665555543
No 190
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=22.42 E-value=1.1e+03 Score=26.41 Aligned_cols=172 Identities=12% Similarity=0.114 Sum_probs=0.0
Q ss_pred hhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhh-----------
Q 004389 430 ADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMAL----------- 498 (757)
Q Consensus 430 ~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~----------- 498 (757)
.+.|.++-.--|-..+++++...+.+....... ..+.+.+--.+.+++++.++=.-.-+.++.++++.
T Consensus 225 ~eAL~sL~TDsGL~~LlPyFv~fIae~vs~ni~-~~nL~lL~~lm~m~rSLl~Np~i~lepYlh~L~PSvlTCvVsk~l~ 303 (576)
T KOG2549|consen 225 QEALQSLETDSGLQQLLPYFVTFIAEGVSVNIV-QNNLELLIYLMRMVRSLLDNPNIFLEPYLHQLVPSVLTCVVSKNLC 303 (576)
T ss_pred HHHHHhhccCccHHHHHHHHHHHHhhheeeccc-cccHHHHHHHHHHHHHHhcCCccchhhHHHHHhhHHHHhhhhhhcc
Q ss_pred -cCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHhhhhhc-CCH
Q 004389 499 -LPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDCRKKLC-GYL 573 (757)
Q Consensus 499 -l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~~~~~l~-p~l 573 (757)
.+....|-.+|.-+..+++..+.-|..--. .+-+.++.++.+.+.++. ....-|-..|..|-...-..+. |.+
T Consensus 304 ~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~--~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~~I~~~ilp~L 381 (576)
T KOG2549|consen 304 LRPELDNHWALRDFAARLLAQICKNFSTLYN--NLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHEVIRTVILPNL 381 (576)
T ss_pred CCccccchHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhhhhhheeccch
Q ss_pred HHHHHHHHHHhhCcCCCC-CChhhHHHHHHHH
Q 004389 574 DGLYNVYRTAVNGEGSLK-VSAEDSLHLVEAL 604 (757)
Q Consensus 574 ~~ll~~~~~l~~~~~~~~-l~~~~~~~l~eai 604 (757)
......++..+..+.... ++..+.-.++.++
T Consensus 382 ~~~~~~l~~~l~~~~~~n~~~i~ea~~v~~~l 413 (576)
T KOG2549|consen 382 KEYNERLQSVLDVESLSNQLDIYEANKVYGAL 413 (576)
T ss_pred HHHHHHhhhhcccchhhhhhhhhhhhhHHHHH
No 191
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.21 E-value=5.6e+02 Score=22.72 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcccCcc------ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 472 AALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 472 a~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
-+|.++.++...|... ..+++..+...+..-+.++.|+..++.++...+..|...|+. ..+..+.+.+
T Consensus 56 ~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~-~~i~~~y~~L 129 (133)
T smart00288 56 LALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDL-SQIVDVYDLL 129 (133)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCc-hHHHHHHHHH
Confidence 3455666666665432 134566666666544446679999999999999999877763 2444444443
No 192
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.83 E-value=3.3e+02 Score=26.41 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=53.0
Q ss_pred HHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC--
Q 004389 536 VLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP-- 612 (757)
Q Consensus 536 ~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~-- 612 (757)
.|+.++.||.+-+ +.+-.|-..+..+....++.+.|.+++++--+...+... +.+..+..++.+..++...+
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kilpVLPqLI~plK~al~tr-----d~ev~~~~Lkvlq~lv~~~~~v 189 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGGEKILPVLPQLILPLKAALVTR-----DDEVICRTLKVLQQLVVSVGCV 189 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcccccccccHHHHHHHHHHHhhc-----cHHHHHHHHHHHHHHHHhcccc
Confidence 3445556654321 256666777788888888899999999999999888752 34555555666655544432
Q ss_pred hHHHHHHHHHhhh
Q 004389 613 QVDAKKALEMLCL 625 (757)
Q Consensus 613 ~e~~~~~l~~l~~ 625 (757)
.....++..+++.
T Consensus 190 G~aLVPfYRQlLp 202 (262)
T KOG3961|consen 190 GAALVPFYRQLLP 202 (262)
T ss_pred chhhhhHHHHhhh
Confidence 1223355555443
No 193
>PRK04964 hypothetical protein; Provisional
Probab=21.81 E-value=2.2e+02 Score=21.35 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=33.0
Q ss_pred HHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-------ChHHHHHHHHHHHHHH
Q 004389 512 VCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-------SEDTAAAAALAFRHIC 562 (757)
Q Consensus 512 ~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~-------~~~v~~~Aa~al~~l~ 562 (757)
+|+.+.++...+..-.+ .|+|..+...++.|.+ |+.++..|+.|-.++.
T Consensus 4 yCelvR~~ya~IgSGd~--gYiP~Ai~ca~k~L~~IAad~~Lp~~vRe~AAfAAANLl 59 (66)
T PRK04964 4 YCELVRKRYAEIGSGDL--GYVPDALGCVLKALNEIAADEALPESVREKAAYAAANLL 59 (66)
T ss_pred HHHHHHHHHHHhcCCcc--ccCcHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 46666666666654322 3888888877766632 4469999999877764
No 194
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=21.40 E-value=1e+02 Score=20.18 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHH
Q 004389 549 DTAAAAALAFRHIC 562 (757)
Q Consensus 549 ~v~~~Aa~al~~l~ 562 (757)
+++..|+.+|++++
T Consensus 27 ~i~~~a~~aL~nl~ 40 (41)
T smart00185 27 EVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHHHHHHc
Confidence 49999999999986
No 195
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=21.20 E-value=4e+02 Score=25.31 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=9.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHH
Q 004389 42 VADNLLHDATSNLETLIFCSQTLR 65 (757)
Q Consensus 42 ~~~~lL~~~~~~~~vr~faa~~L~ 65 (757)
-|++||...-.+..||.||-..|+
T Consensus 78 ~aL~LL~~~~~~~~Vr~yAV~~L~ 101 (184)
T smart00145 78 DALELLSPKFPDPFVRAYAVERLE 101 (184)
T ss_pred HHHHHhCccCCCHHHHHHHHHHHH
Confidence 344444322223444444444443
No 196
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.20 E-value=2.1e+02 Score=24.06 Aligned_cols=55 Identities=7% Similarity=0.084 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhh-hcCCHHHHHHHHHHHhhC
Q 004389 532 ILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKK-LCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 532 ~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~~~~~-l~p~l~~ll~~~~~l~~~ 586 (757)
+.+.++.++..+|+|= .++|.-|..-|.-+.+.|... +..+...+++.+..++..
T Consensus 8 ~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~~kil~~f~~ll~~ 64 (102)
T PF12333_consen 8 FFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGWVKILPNFLDLLGW 64 (102)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhHHHHHHHHHHHHCC
Confidence 5777888888889773 249999999999999999887 557788888888888864
No 197
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=21.07 E-value=4.3e+02 Score=25.63 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=43.3
Q ss_pred HcCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 004389 14 LYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ 69 (757)
Q Consensus 14 ly~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~ 69 (757)
+++-+.|..|+-|..++.+.+.. ++-|.++..|.+++ --+.|++|..+|..+.+
T Consensus 20 f~Gv~~P~~R~lak~~~~~~~~~~~~~~~~l~~~Lw~~~--~~E~r~~al~~l~~~~~ 75 (208)
T cd07064 20 FYGIKTPERRALSKPFLKESKLPDKEELWELVLELWQQP--EREYQYVAIDLLRKYKK 75 (208)
T ss_pred cCCCChHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHcch--HHHHHHHHHHHHHHHHh
Confidence 56778999999999999888764 57788899999752 24799999998887644
No 198
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=20.97 E-value=3e+02 Score=24.84 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=47.2
Q ss_pred HHHHHHHhhcccCcc------ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH-hccC
Q 004389 473 ALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT-SGMS 545 (757)
Q Consensus 473 ~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~-~~l~ 545 (757)
+|.++-++...|... ..+++..+..++.. ..|+.|+..++.+|...+..|...|+. ..+..+.+.|. +|..
T Consensus 61 AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~~~f~~~~~l-~~i~~~y~~L~~~G~~ 138 (142)
T cd03569 61 ALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT-TKNEEVRQKILELIQAWALAFRNKPQL-KYVVDTYQILKAEGHK 138 (142)
T ss_pred HHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc-cCCHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHcCCC
Confidence 444555556665432 23566667766654 458999999999999999999877763 24555555543 3443
Q ss_pred CC
Q 004389 546 TS 547 (757)
Q Consensus 546 ~~ 547 (757)
-|
T Consensus 139 FP 140 (142)
T cd03569 139 FP 140 (142)
T ss_pred CC
Confidence 33
No 199
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.90 E-value=4.7e+02 Score=24.15 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH-HhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRT-AVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~-l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
+-.++...+..+....+.++...++.++..+.. +++... -+...+..++|++..+...
T Consensus 89 i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~---~~~~~k~~~Le~l~~l~~~ 147 (168)
T PF12783_consen 89 IFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDN---SSLWQKELALEILRELCKD 147 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CcHHHHHHHHHHHHHHHhC
Confidence 788888889999988899999888888876655 665321 1456888899999877653
No 200
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=20.77 E-value=1.4e+03 Score=26.71 Aligned_cols=158 Identities=9% Similarity=0.114 Sum_probs=88.7
Q ss_pred hhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc--ccccHHHHHhhcCCCCChHHHHHHHHH
Q 004389 437 ASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV--EAEVMPQVMALLPKLPQQPQLLQTVCL 514 (757)
Q Consensus 437 ~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~~l~~~~~l~~t~~~ 514 (757)
...+.++.+.+.+...|.... + +.+-+--|.+|-.+..+++.++.. .+..+|.+... .-......++.+++.
T Consensus 378 ~~Kt~~e~~~~~IlplL~~S~----~-~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l-~~~tt~~~vkvn~L~ 451 (700)
T KOG2137|consen 378 KEKTPPEEVKEKILPLLYRSL----E-DSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNL-AFKTTNLYVKVNVLP 451 (700)
T ss_pred HhhCChHHHHHHHHHHHHHHh----c-CcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcc-hhcccchHHHHHHHH
Confidence 345666666666666555433 1 345566799999999999998743 23445555544 211246899999999
Q ss_pred HHHhhHHHHhhCCCCchhHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHh--h-hhhcCCHHHHHHHHHHHhhCcCCC
Q 004389 515 TIGAYSKWFDAASSDPSILASVLSILTSG-MSTSEDTAAAAALAFRHICDDC--R-KKLCGYLDGLYNVYRTAVNGEGSL 590 (757)
Q Consensus 515 ~ig~~~~~l~~~~~~~~~l~~~l~~l~~~-l~~~~~v~~~Aa~al~~l~~~~--~-~~l~p~l~~ll~~~~~l~~~~~~~ 590 (757)
+++.+.+.++.- ..++.+++++..- .++|. +.........++.-.- + ..+...+.+++..+. ..+
T Consensus 452 c~~~l~q~lD~~----~v~d~~lpi~~~~~~~dp~-iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls---~~~--- 520 (700)
T KOG2137|consen 452 CLAGLIQRLDKA----AVLDELLPILKCIKTRDPA-IVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLS---VAP--- 520 (700)
T ss_pred HHHHHHHHHHHH----HhHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhh---hcc---
Confidence 999999777654 2566666655332 35555 4333333333333211 1 112222333332221 111
Q ss_pred CCChhhHHHHHHHHHHHHhcC
Q 004389 591 KVSAEDSLHLVEALSMVITEL 611 (757)
Q Consensus 591 ~l~~~~~~~l~eai~~vi~~~ 611 (757)
.++.++....|+.|-.+.+.+
T Consensus 521 ~L~~~Qy~~~m~~i~~ml~~i 541 (700)
T KOG2137|consen 521 SLNGEQYNKYMSEIRLMLSAI 541 (700)
T ss_pred cccHHHHHHHHHHHHHHHhhh
Confidence 366677777777776555553
No 201
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.47 E-value=1.3e+03 Score=26.46 Aligned_cols=205 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC--CCCChH
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP--KLPQQP 506 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~--~l~~~~ 506 (757)
+..++.|+....|-...+..+.+.+. ...-...||+-+ +..+...+..-..+.+..++.++. ....++
T Consensus 380 ~r~~~lDal~~aGT~~av~~i~~~I~---------~~~~~~~ea~~~-l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~ 449 (618)
T PF01347_consen 380 ARKIFLDALPQAGTNPAVKFIKDLIK---------SKKLTDDEAAQL-LASLPFHVRRPTEELLKELFELAKSPKVKNSP 449 (618)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHHH---------TT-S-HHHHHHH-HHHHHHT-----HHHHHHHHHHHT-HHHHT-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---------cCCCCHHHHHHH-HHHHHhhcCCCCHHHHHHHHHHHhCccccCCh
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHhh
Q 004389 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVN 585 (757)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~-p~l~~ll~~~~~l~~ 585 (757)
.++.+++..+|....-...+.. .. ..|..+...+. -+++.+.+.+.....
T Consensus 450 ~l~~ta~L~~~~lv~~~c~~~~---~~--------------------------~~~~~~~~~~~~~~~~~l~~~l~~~~~ 500 (618)
T PF01347_consen 450 YLRETALLSLGSLVHKYCVNSD---SA--------------------------EFCDPCSRCIIEKYVPYLEQELKEAVS 500 (618)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----------------------------------------SS--GGGTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCceeeccc---cc--------------------------ccccccchhhHHHHHHHHHHHHHHHhh
Q ss_pred CcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC
Q 004389 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (757)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (757)
.++ .+++...+.|+|.+=.. -.+..+..++...... ....+..++..+..+.....
T Consensus 501 ~~~-----~~~~~~~LkaLgN~g~~---------------~~i~~l~~~i~~~~~~----~~~~R~~Ai~Alr~~~~~~~ 556 (618)
T PF01347_consen 501 RGD-----EEEKIVYLKALGNLGHP---------------ESIPVLLPYIEGKEEV----PHFIRVAAIQALRRLAKHCP 556 (618)
T ss_dssp TT------HHHHHHHHHHHHHHT-G---------------GGHHHHHTTSTTSS-S-----HHHHHHHHHTTTTGGGT-H
T ss_pred ccC-----HHHHHHHHHHhhccCCc---------------hhhHHHHhHhhhcccc----chHHHHHHHHHHHHHhhcCc
Q ss_pred CCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004389 666 HPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (757)
Q Consensus 666 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 705 (757)
..+.+++..++.+...+.+|+=+++..+.+.
T Consensus 557 ---------~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 557 ---------EKVREILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp ---------HHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
No 202
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=1.5e+03 Score=26.81 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=50.3
Q ss_pred HHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCC
Q 004389 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVS 593 (757)
Q Consensus 515 ~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~ 593 (757)
.+..-++-+..+++ ...+.+.++-+++.+.. .|...||.++..+-......+.| -+..++..+..+ .
T Consensus 228 lir~~~~~l~~~~~---~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----avs~Lq~flssp-----~ 295 (865)
T KOG1078|consen 228 LIRIASELLKENQQ---ADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AVSVLQLFLSSP-----K 295 (865)
T ss_pred HHHHHHHHhhhccc---chhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcch----HHHHHHHHhcCc-----H
Confidence 33333445565654 56677788888887643 48889999988887666777777 223333344321 1
Q ss_pred hhhHHHHHHHHHHHHhcCC
Q 004389 594 AEDSLHLVEALSMVITELP 612 (757)
Q Consensus 594 ~~~~~~l~eai~~vi~~~~ 612 (757)
.-.|-..+..+..+..+-|
T Consensus 296 ~~lRfaAvRtLnkvAm~~P 314 (865)
T KOG1078|consen 296 VALRFAAVRTLNKVAMKHP 314 (865)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 2334445555555555543
Done!