Query 004389
Match_columns 757
No_of_seqs 186 out of 1482
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 23:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibv_A Exportin-T; karyopherin 100.0 1.4E-79 4.7E-84 731.2 59.0 693 3-750 4-773 (980)
2 2x1g_F Cadmus; transport prote 100.0 5.3E-73 1.8E-77 688.4 52.9 694 4-753 6-768 (971)
3 2x19_B Importin-13; nuclear tr 100.0 1.6E-70 5.5E-75 667.0 69.5 694 3-751 22-758 (963)
4 4hat_C Exportin-1; heat repeat 100.0 1.3E-71 4.4E-76 662.3 53.7 686 3-749 14-789 (1023)
5 3gjx_A Exportin-1; transport, 100.0 4.9E-69 1.7E-73 635.2 51.0 710 3-749 26-815 (1073)
6 3m1i_C Exportin-1; heat repeat 100.0 7.5E-60 2.6E-64 575.0 56.8 697 3-749 14-789 (1049)
7 3a6p_A Exportin-5; exportin-5, 100.0 1.5E-55 5.2E-60 538.3 44.9 687 4-743 10-855 (1204)
8 1wa5_C Importin alpha RE-expor 100.0 2.4E-41 8.4E-46 408.7 48.5 632 1-730 1-694 (960)
9 4fdd_A Transportin-1; heat rep 100.0 2.7E-36 9.2E-41 361.2 46.5 616 3-748 11-661 (852)
10 2bpt_A Importin beta-1 subunit 100.0 7.1E-34 2.4E-38 341.4 52.3 634 1-748 1-671 (861)
11 1qgr_A Protein (importin beta 100.0 1.5E-30 5E-35 313.1 48.5 631 6-748 2-682 (876)
12 1ibr_B P95, importin beta-1 su 99.9 4.2E-25 1.4E-29 245.2 26.9 432 6-545 2-461 (462)
13 1u6g_C TIP120 protein, CAND1; 99.8 1.1E-15 3.6E-20 190.0 39.5 568 4-729 5-620 (1230)
14 2bpt_A Importin beta-1 subunit 99.6 3.6E-11 1.2E-15 143.8 48.3 377 289-749 348-767 (861)
15 4fdd_A Transportin-1; heat rep 99.5 2.6E-11 9E-16 144.7 39.9 466 193-749 105-619 (852)
16 1qgr_A Protein (importin beta 99.5 4.3E-10 1.5E-14 134.7 42.5 266 464-749 339-641 (876)
17 1b3u_A Protein (protein phosph 99.4 1.6E-09 5.3E-14 123.5 41.2 563 4-705 9-585 (588)
18 1b3u_A Protein (protein phosph 99.3 1.4E-09 4.8E-14 123.8 29.8 516 97-748 22-551 (588)
19 1u6g_C TIP120 protein, CAND1; 99.2 4.5E-08 1.5E-12 121.5 38.0 265 465-750 267-603 (1230)
20 1wa5_C Importin alpha RE-expor 98.6 3.8E-05 1.3E-09 92.5 33.5 271 466-750 471-796 (960)
21 1ibr_B P95, importin beta-1 su 98.5 1.2E-06 3.9E-11 96.3 17.0 271 466-749 143-441 (462)
22 2qk1_A Protein STU2; STU2P, XM 98.5 5.1E-06 1.8E-10 82.6 19.6 195 464-676 27-233 (249)
23 2qk2_A LP04448P; mini spindles 98.4 1.3E-06 4.3E-11 87.0 12.0 188 464-720 26-219 (242)
24 2vgl_B AP-2 complex subunit be 98.3 0.00024 8.1E-09 80.4 30.1 460 16-606 59-529 (591)
25 1w63_A Adapter-related protein 98.1 0.013 4.3E-07 66.5 37.6 459 17-607 81-575 (618)
26 2qk1_A Protein STU2; STU2P, XM 98.0 9.9E-05 3.4E-09 73.2 15.6 196 505-721 29-235 (249)
27 2x1g_F Cadmus; transport prote 98.0 0.014 4.6E-07 70.3 37.0 251 467-729 600-886 (971)
28 4b8j_A Importin subunit alpha- 97.7 0.045 1.5E-06 60.6 32.1 226 464-719 255-509 (528)
29 2x19_B Importin-13; nuclear tr 97.5 0.045 1.5E-06 65.6 30.5 257 467-741 584-886 (963)
30 3ibv_A Exportin-T; karyopherin 97.4 0.0095 3.3E-07 71.0 23.2 154 546-711 713-874 (980)
31 1wa5_B Importin alpha subunit; 97.4 0.019 6.6E-07 63.7 24.2 220 465-709 269-512 (530)
32 2qk2_A LP04448P; mini spindles 97.2 0.0059 2E-07 60.0 15.6 184 540-750 20-210 (242)
33 2jdq_A Importin alpha-1 subuni 97.1 0.0088 3E-07 64.7 16.7 222 465-710 162-393 (450)
34 1wa5_B Importin alpha subunit; 97.1 0.014 4.7E-07 64.9 17.9 223 465-710 185-415 (530)
35 2jdq_A Importin alpha-1 subuni 97.0 0.014 4.8E-07 63.1 17.1 218 465-708 119-348 (450)
36 2vgl_A Adaptor protein complex 96.9 0.78 2.7E-05 51.6 35.8 112 443-565 440-552 (621)
37 1w63_A Adapter-related protein 96.8 0.093 3.2E-06 59.3 22.4 146 449-609 108-263 (618)
38 4b8j_A Importin subunit alpha- 96.8 0.053 1.8E-06 60.0 19.9 222 465-708 172-401 (528)
39 4hat_C Exportin-1; heat repeat 96.6 0.03 1E-06 66.9 16.8 208 504-730 465-699 (1023)
40 3tpo_A Importin subunit alpha- 96.6 0.84 2.9E-05 50.3 27.6 223 466-708 264-498 (529)
41 2z6g_A B-catenin; FULL-length, 96.3 0.58 2E-05 54.3 25.0 289 7-339 117-422 (780)
42 3ul1_B Importin subunit alpha- 96.2 0.5 1.7E-05 51.8 23.1 232 465-719 244-490 (510)
43 2iw3_A Elongation factor 3A; a 96.1 0.017 5.9E-07 67.4 10.7 250 429-710 72-327 (986)
44 2vgl_A Adaptor protein complex 96.1 0.08 2.7E-06 59.8 15.9 150 445-607 108-268 (621)
45 2vgl_B AP-2 complex subunit be 96.1 0.26 8.8E-06 55.4 19.9 129 464-611 60-191 (591)
46 2iw3_A Elongation factor 3A; a 96.0 0.41 1.4E-05 56.1 21.4 234 471-736 70-311 (986)
47 4hxt_A De novo protein OR329; 96.0 0.11 3.7E-06 50.7 14.8 224 465-713 14-247 (252)
48 3m1i_C Exportin-1; heat repeat 95.9 0.072 2.5E-06 64.5 15.6 211 504-729 465-698 (1049)
49 3ul1_B Importin subunit alpha- 95.8 1.1 3.9E-05 49.0 23.4 140 465-610 286-431 (510)
50 1xqr_A HSPBP1 protein; armadil 95.8 1.1 3.8E-05 45.0 21.0 237 488-749 26-287 (296)
51 2z6g_A B-catenin; FULL-length, 95.1 6.7 0.00023 45.3 35.2 253 14-301 158-428 (780)
52 3gjx_A Exportin-1; transport, 95.0 0.24 8.1E-06 59.1 15.0 212 505-730 492-725 (1073)
53 1xqr_A HSPBP1 protein; armadil 94.9 2.1 7.2E-05 42.9 19.9 213 469-706 56-286 (296)
54 4db8_A Armadillo-repeat protei 94.6 0.17 5.9E-06 49.5 10.7 216 465-706 24-250 (252)
55 2of3_A ZYG-9; multifunctional 94.4 0.43 1.5E-05 46.8 12.8 136 328-523 99-238 (266)
56 3ltm_A Alpha-REP4; protein eng 94.2 1.4 4.7E-05 41.5 16.0 173 464-707 30-203 (211)
57 4hxt_A De novo protein OR329; 94.0 1.3 4.3E-05 42.9 15.6 221 7-251 4-244 (252)
58 1oyz_A Hypothetical protein YI 94.0 5.2 0.00018 39.4 21.6 213 7-246 25-248 (280)
59 3tpo_A Importin subunit alpha- 93.9 2.3 8E-05 46.6 19.3 218 465-708 174-407 (529)
60 2z6h_A Catenin beta-1, beta-ca 93.3 13 0.00044 41.8 34.0 132 467-612 197-339 (644)
61 3ltj_A Alpharep-4; protein eng 92.7 3.5 0.00012 38.3 15.8 170 464-704 25-195 (201)
62 3u0r_A Apoptosis inhibitor 5; 92.4 7 0.00024 41.2 18.3 196 505-729 41-274 (507)
63 4db6_A Armadillo repeat protei 92.0 0.38 1.3E-05 45.4 8.1 138 464-610 23-168 (210)
64 2z6h_A Catenin beta-1, beta-ca 92.0 19 0.00064 40.4 36.0 256 12-301 20-292 (644)
65 3ltj_A Alpharep-4; protein eng 91.8 1.8 6E-05 40.3 12.5 109 464-607 56-165 (201)
66 1w9c_A CRM1 protein, exportin 91.6 2.2 7.4E-05 42.8 13.1 145 194-348 45-199 (321)
67 4db6_A Armadillo repeat protei 91.2 1.5 5.2E-05 41.1 11.4 132 465-607 66-207 (210)
68 4db8_A Armadillo-repeat protei 91.0 0.42 1.4E-05 46.6 7.4 136 465-610 66-210 (252)
69 1oyz_A Hypothetical protein YI 86.1 6.7 0.00023 38.5 12.6 117 464-607 102-219 (280)
70 1xm9_A Plakophilin 1; armadill 83.5 50 0.0017 35.1 20.7 112 466-582 57-196 (457)
71 1jdh_A Beta-catenin; beta-cate 83.2 53 0.0018 35.2 33.3 135 466-613 199-343 (529)
72 3now_A UNC-45 protein, SD10334 81.6 80 0.0027 36.2 41.3 443 220-707 9-524 (810)
73 3ltm_A Alpha-REP4; protein eng 81.5 33 0.0011 31.6 16.5 172 6-204 20-200 (211)
74 3oc3_A Helicase MOT1, MOT1; re 81.3 3.6 0.00012 44.3 8.0 166 464-663 185-366 (800)
75 4ffb_C Protein STU2; tubulin f 80.6 8.5 0.00029 37.9 10.6 163 543-730 63-243 (278)
76 1jdh_A Beta-catenin; beta-cate 77.4 81 0.0028 33.7 37.1 257 10-301 21-295 (529)
77 4ady_A RPN2, 26S proteasome re 75.1 53 0.0018 38.2 16.0 104 470-586 595-699 (963)
78 3nmw_A APC variant protein; AR 73.2 71 0.0024 32.5 15.3 220 469-706 48-291 (354)
79 1w9c_A CRM1 protein, exportin 71.5 36 0.0012 34.0 11.9 102 652-754 93-205 (321)
80 4ffb_C Protein STU2; tubulin f 70.9 34 0.0012 33.4 12.0 181 464-665 20-215 (278)
81 2of3_A ZYG-9; multifunctional 70.5 51 0.0018 32.0 12.6 64 647-718 181-247 (266)
82 4atg_A TAF6; transcription, TF 68.8 72 0.0024 29.3 13.1 131 443-580 39-180 (196)
83 2db0_A 253AA long hypothetical 66.0 79 0.0027 28.8 18.2 200 464-706 43-245 (253)
84 1xm9_A Plakophilin 1; armadill 65.6 1.1E+02 0.0037 32.4 15.4 106 492-610 4-117 (457)
85 3nmz_A APC variant protein; pr 65.0 97 0.0033 32.8 14.6 185 505-706 213-407 (458)
86 4atg_A TAF6; transcription, TF 63.2 88 0.003 28.7 11.8 142 470-633 25-178 (196)
87 3oc3_A Helicase MOT1, MOT1; re 61.0 63 0.0022 35.0 11.6 82 470-562 245-327 (800)
88 2db0_A 253AA long hypothetical 61.0 98 0.0034 28.2 13.3 178 490-708 32-211 (253)
89 1vsy_4 Proteasome activator BL 60.9 2.3E+02 0.0078 32.4 25.3 302 371-709 294-689 (799)
90 3a6p_A Exportin-5; exportin-5, 59.0 3E+02 0.01 33.2 44.3 42 691-732 597-638 (1204)
91 3nmw_A APC variant protein; AR 57.1 47 0.0016 33.9 10.1 141 465-612 183-337 (354)
92 3opb_A SWI5-dependent HO expre 56.3 2.6E+02 0.009 31.6 41.8 264 466-746 470-775 (778)
93 3l6x_A Catenin delta-1; cateni 55.7 2.4E+02 0.0081 30.9 26.1 226 466-711 147-436 (584)
94 3nmz_A APC variant protein; pr 50.7 58 0.002 34.6 9.8 141 465-612 299-453 (458)
95 1te4_A Conserved protein MTH18 47.0 63 0.0022 27.0 7.8 53 11-66 47-99 (131)
96 3tjz_B Coatomer subunit gamma; 45.2 25 0.00085 36.0 5.6 104 465-585 80-186 (355)
97 4ady_A RPN2, 26S proteasome re 40.0 1.7E+02 0.0057 34.1 11.8 54 550-614 628-681 (963)
98 3tt9_A Plakophilin-2; cell adh 39.9 1.1E+02 0.0039 28.9 9.0 146 445-607 53-227 (233)
99 1te4_A Conserved protein MTH18 31.4 84 0.0029 26.2 6.1 47 16-65 83-129 (131)
100 1x5b_A Signal transducing adap 30.1 2.4E+02 0.0081 24.9 8.9 74 534-611 51-127 (163)
101 2npp_B PP2A, B subunit, serine 29.4 5.1E+02 0.018 27.1 16.4 92 653-747 304-397 (449)
102 3fga_B Serine/threonine-protei 26.6 5.4E+02 0.018 26.4 17.4 94 652-748 270-365 (403)
103 3tjz_B Coatomer subunit gamma; 25.3 58 0.002 33.2 4.4 83 470-564 121-206 (355)
104 3zyq_A Hepatocyte growth facto 23.1 3.8E+02 0.013 25.0 9.5 77 534-614 44-123 (226)
No 1
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=100.00 E-value=1.4e-79 Score=731.23 Aligned_cols=693 Identities=14% Similarity=0.215 Sum_probs=564.2
Q ss_pred hHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhcCCCCCChh--
Q 004389 3 LQNTVKEALNALYH-HPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATS-NLETLIFCSQTLRSKVQRDVEELPSE-- 78 (757)
Q Consensus 3 ~~~~v~~al~~ly~-~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~-~~~vr~faa~~L~~ki~~~w~~l~~e-- 78 (757)
+.++|.+||+..|+ ++|++.|++|++||++||++|++|.+|..+|.+++. +.++||||+++|+++|+ .++++
T Consensus 4 ~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~----~l~~e~~ 79 (980)
T 3ibv_A 4 SAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSSTGWKICHEIFSEKTKYKPSTRLICLQTLSEKVR----EWNNESN 79 (980)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHH----HCCTTTS
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcChhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----hCChhhh
Confidence 36899999965554 458999999999999999999999999999986433 78999999999999999 78999
Q ss_pred --hHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCC--chhHHHHHhhhch
Q 004389 79 --AVRGLQDSLNTLLKKFH--KGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPE--FVPGFLELLTVLP 152 (757)
Q Consensus 79 --~~~~lr~~Ll~~l~~~~--~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~--~~~~~L~~L~~L~ 152 (757)
++..+|+.|++++.+.+ .+|++||+|+|.+++.++++++|..||+ +++++++.+++++. ....+|++|..|+
T Consensus 80 ~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~Wp~--~i~~l~~~~~~~~~~~~~~~~LriL~~i~ 157 (980)
T 3ibv_A 80 LLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNWND--FFASLQGVIAASSQSEFSNFYLKVLLSIG 157 (980)
T ss_dssp HHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccCch--HHHHHHHHhcCCChhHHHHHHHHHHHHhH
Confidence 99999999999999854 4688999999999999999999999999 99999998875322 3456677777777
Q ss_pred hhcccccccCCh---HHHHHHHHHHHHh-----HHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhccCCCCCcccccchh
Q 004389 153 EEVFNYKIAARP---ERRRQFEKELTSQ-----MEVALSTLTACLH--INELKEQVLEAFASWLRLKHRIPGSVLASHPL 222 (757)
Q Consensus 153 ee~~~~~~~~~~---~~r~~l~~~l~~~-----~~~vl~~l~~~l~--~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~l 222 (757)
||+.+.++..++ .|+.++++.|... .+.+++++.++.+ ++++...+|+|+.+|+.| +|.+.+.+.++
T Consensus 158 EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~l 234 (980)
T 3ibv_A 158 DEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSW---ININLIVNEPC 234 (980)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHH
T ss_pred HHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchH
Confidence 999876544433 4566788888766 6666777777654 346889999999999997 77777778999
Q ss_pred HHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHh---cccCCCHHHHHHHHHHHHHH
Q 004389 223 VLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHL---TDSSKDEEDVKAIARLFADM 299 (757)
Q Consensus 223 l~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~---~~~~~d~~~~~~~~~l~~~~ 299 (757)
++.+|+.|.+++++++|++||++++++++. ++++.+++..+ .+.+.+ ..+++|.|..+++|++++++
T Consensus 235 l~~l~~~L~~~~~r~~A~ecL~ei~~k~~~-----~~~k~~li~~l-----~L~~~~~~l~~~~~D~d~~~~la~L~~~~ 304 (980)
T 3ibv_A 235 MNLLYSFLQIEELRCAACETMTEIVNKKMK-----PLEKLNLLNIL-----NLNLFFSKSQEQSTDPNFDEHVAKLINAQ 304 (980)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHH-----HHHHHHCC-----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHcCCC-----hhhHHHHHHHH-----hHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999998763 33556666543 222222 22257889999999999999
Q ss_pred hhHHHHHHHcCC------------chhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHH
Q 004389 300 GDSYVELIATGS------------DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERS 367 (757)
Q Consensus 300 ~~~~~~~i~~~~------------~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (757)
|+.+... .+.+ +.+..+++++|.+++|++++|+..+++||+.+.+...+.++ +.
T Consensus 305 ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~-------------~~ 370 (980)
T 3ibv_A 305 GVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESS-------------SK 370 (980)
T ss_dssp HHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTT-------------SC
T ss_pred HHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccc-------------cc
Confidence 9999888 6555 34568899999999999999999999999998876643210 00
Q ss_pred HHHHhhHHHHHHHHHHHHhhccCCCCCCCCCh----hhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChh
Q 004389 368 RRLQVFRSAYESLVSLVSFRVQYPQDYQDLSL----EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGD 443 (757)
Q Consensus 368 ~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~----d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~ 443 (757)
.....++|++.+|++++++||+||++. +|++ ||.++|.+||++ ++ .+.+++.++|++
T Consensus 371 ~~~~~~~~~l~~Ll~~li~k~~yp~d~-~~~~~~d~ed~~~F~e~Rk~-----------------l~-~l~d~~~~l~~~ 431 (980)
T 3ibv_A 371 ELSASLKEFLKSLLEAIIKKMKYDESQ-EWDDDPDSEEEAEFQEMRKK-----------------LK-IFQDTINSIDSS 431 (980)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTSCCTTC-CCCCCSSSSTHHHHHHHHHH-----------------HH-HHHHHHHHHCHH
T ss_pred cccHHHHHHHHHHHHHHHHHccCCCcc-ccccccchhHHHHHHHHHHH-----------------HH-HHHHHHHhcChH
Confidence 123578999999999999999999874 3543 667899999999 88 899999999999
Q ss_pred HHHHHHHHHHHHhHhhCC--CCCCCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhcCC-----C--CChHHH
Q 004389 444 ATLKILYIKFVEGVACCG--NKHNEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPK-----L--PQQPQL 508 (757)
Q Consensus 444 ~~l~~l~~~l~~~~~~~~--~~~~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~-----l--~~~~~l 508 (757)
.++.++++.+...+.+.. ..+.+|+.+||+||+++++||++... .++.+|++++++.. + +.||.|
T Consensus 432 ~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V 511 (980)
T 3ibv_A 432 LFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLV 511 (980)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHH
Confidence 999955555554432211 11357999999999999999998852 23456666665432 2 459999
Q ss_pred HHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh--ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 004389 509 LQTVCLTIGAYSKWFDAASSDPSILASVLSILTS--GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (757)
Q Consensus 509 ~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~--~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~ 585 (757)
|.++|+++|||++|+..||+ ++++++++++. |+++++ +|+.+||+||.+||++|+++|.||++.|++.+.+++.
T Consensus 512 ~~~~~~~l~rys~~~~~~~~---~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~ 588 (980)
T 3ibv_A 512 QLLYMEILVRYASFFDYESA---AIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLN 588 (980)
T ss_dssp HHHHHHHHHHTGGGGGTCCT---THHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHhcCch---hHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhc
Confidence 99999999999999999997 99999999999 998764 5999999999999999999999999999999999887
Q ss_pred CcCCC-CC---------------ChhhHHHHHHHHHHHHhcC--ChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccC-
Q 004389 586 GEGSL-KV---------------SAEDSLHLVEALSMVITEL--PQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH- 646 (757)
Q Consensus 586 ~~~~~-~l---------------~~~~~~~l~eai~~vi~~~--~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~- 646 (757)
..... .- ..+++.+++||+|.+++.. |.|+...++..++.|++++++++++....+.++..
T Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~ 668 (980)
T 3ibv_A 589 ISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIIS 668 (980)
T ss_dssp CCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHH
T ss_pred CcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHH
Confidence 32100 00 1347999999999999875 57788899999999999999999976543321111
Q ss_pred cchhhHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Q 004389 647 PRDLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ 725 (757)
Q Consensus 647 ~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~ 725 (757)
..+...+++++++.|+..+. ++|+..++.++|+++..+++.|+++..|+|++|.+++++++++|.++.|++|++++.++
T Consensus 669 i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll 748 (980)
T 3ibv_A 669 VYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL 748 (980)
T ss_dssp HHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH
Confidence 11234456777777665432 46788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHhhHHHHHHHhCCc
Q 004389 726 GLYQQHQQPCFLYLSSEVIKVVFPP 750 (757)
Q Consensus 726 ~~~~~~~~~~~l~~~~~~i~~f~~~ 750 (757)
..|+.+++++||++++++|++||++
T Consensus 749 ~~~~~~e~~~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 749 NSIDMNELVDVLSFISQLIHIYKDN 773 (980)
T ss_dssp HHCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987
No 2
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=100.00 E-value=5.3e-73 Score=688.44 Aligned_cols=694 Identities=21% Similarity=0.355 Sum_probs=557.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHH
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGL 83 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~l 83 (757)
+++|+++|+++|+ +|++.|++|++||++||++|++|.+|..||+. +.+.++|+|||++|+++|+++|..++++++..+
T Consensus 6 ~~~l~~~l~~~~~-~d~~~r~~A~~~L~~~~~~p~~w~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i 83 (971)
T 2x1g_F 6 IARLEEAVVSFYR-SNSQNQAITHEWLTDAEASPQAWQFSWQLMQL-GKSQEVQFFGAITLHSKLMKHWHEVPPENREEL 83 (971)
T ss_dssp -----CTHHHHHT-STTTC----CHHHHHTTTSTHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHH
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHH
Confidence 6789999999874 68889999999999999999999999999976 678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC-------CCCchhHHHHHhhhchhhcc
Q 004389 84 QDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS-------HPEFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 84 r~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~-------~~~~~~~~L~~L~~L~ee~~ 156 (757)
|+.+++++.....+|+.||+|+|.+++.++.++++ .||+ +++++++.+++ ++..+...+.+|+.+|||+.
T Consensus 84 r~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~p-~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~ 160 (971)
T 2x1g_F 84 KQKILESIVRFAGGPKIVLNRLCISLGAYIVHMLG-EWPG--AIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQ 160 (971)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTC-C--------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccc-cccH--HHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHh
Confidence 99999999987666899999999999999999998 9999 99999988865 23467899999999999987
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----------HHHHHHHHHHHHHhhccCCCCCcccccchhHHHH
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----------ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA 226 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----------~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~ 226 (757)
+.+ +..||..+++.+..+++.|++++.++++.. ++...+++|+.+|+.++ .+|.+ ...++++.+
T Consensus 161 ~~~---~~~~r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~-~ip~~--~~~~ll~~l 234 (971)
T 2x1g_F 161 VIH---TSVKRVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNI-GYTIE--GCVTITAVL 234 (971)
T ss_dssp HCC---CSSCHHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHS-CCCGG--GHHHHHHHH
T ss_pred ccC---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhC-CcCcc--ccccHHHHH
Confidence 544 456788889999999999999998887642 57889999999999952 25655 467889988
Q ss_pred Hhcc------------------CCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcc--cCCC-
Q 004389 227 LSSL------------------HSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTD--SSKD- 285 (757)
Q Consensus 227 ~~~L------------------~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~--~~~d- 285 (757)
|. | .+++++++|++|+.++++.... .++.+.+..++|.++++...+.. .++|
T Consensus 235 ~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~ 307 (971)
T 2x1g_F 235 LE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVNIIIQPDC------HNYPKTAFVLIKMFLDSLSEITKTEWKREN 307 (971)
T ss_dssp HH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHHHHHCSGG------GGCHHHHHHHHHHHHHHHHHHHHHHSSSSC
T ss_pred Hh-hhhhhccccccccccccCcCCcHHHHHHHHHHHHHHcCccc------cccHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 87 6 4578899999999999986431 24677888888888776655431 3344
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHH----c----CCchhHHHHHHHhccccc----C-ccchhhhhHHHHHHHHHHHhcc
Q 004389 286 --EEDVKAIARLFADMGDSYVELIA----T----GSDESMLIVHALLEVASH----P-EYDIASMTFNFWHSLQVILTKR 350 (757)
Q Consensus 286 --~~~~~~~~~l~~~~~~~~~~~i~----~----~~~~~~~~l~~ll~~~~~----~-~~~v~~~~l~fW~~l~~~~~~~ 350 (757)
++..+.+|++++.+++.+...+. + .++.+..+++.++.++.+ + +++++..+++||+.+.+.....
T Consensus 308 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~ 387 (971)
T 2x1g_F 308 DNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAM 387 (971)
T ss_dssp SCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 37888999999999999888776 3 224567889999998877 3 6789999999999998854321
Q ss_pred cCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCC--CCCCChhhhHHHHHhhhcccccCCcchhhhhhhhh
Q 004389 351 DSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQD--YQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIA 428 (757)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d--~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~ 428 (757)
. .+ ..+......++|++.+++..++.++.||+| +++|+.+|.++|..+|+.
T Consensus 388 ~------~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~----------------- 440 (971)
T 2x1g_F 388 S------ND----EQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQD----------------- 440 (971)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHH-----------------
T ss_pred c------cc----cchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHH-----------------
Confidence 1 00 001234578899999999999999999976 356777778899999998
Q ss_pred hhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCC-C--h
Q 004389 429 VADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-Q--Q 505 (757)
Q Consensus 429 ~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~-~--~ 505 (757)
++|++.+++.++| +.+++.+.+.+.+.+......+.+|+.+||++++++++++++.....+.++++++.+++++ . |
T Consensus 441 ~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~ 519 (971)
T 2x1g_F 441 ISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLN 519 (971)
T ss_dssp HHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSC
T ss_pred HHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccC
Confidence 9999999999999 7788888888877653211113789999999999999999998877788899988776665 2 9
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 004389 506 PQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (757)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~ 585 (757)
|.||.++|+++|+|++|+..+|+ ++++++++++++++ +. |+.+||+||.+||++|+..|.||+++|++.+.++++
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~---~l~~vl~~l~~~l~-~~-v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~ 594 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPA---YIPPAINLLVRGLN-SS-MSAQATLGLKELCRDCQLQLKPYADPLLNACHASLN 594 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC-------CHHHHHHHHHHHHH-SS-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhC-hH-HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHc
Confidence 99999999999999999998886 89999999999994 66 999999999999999999999999999999999998
Q ss_pred CcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC
Q 004389 586 GEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (757)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (757)
.+ .++.+++..+++++|.+++++|.++..+++..++.|+++.+++++++... +++.......+++.+++++++++
T Consensus 595 ~~---~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~--~~~~~~~~~~~l~~L~~~~~~l~ 669 (971)
T 2x1g_F 595 TG---RMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK--TPAARIRTIFRLNMISTLFSSLN 669 (971)
T ss_dssp ST---TSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC---CCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC--ChhhHHHHHHHHHHHHHHHhhcC
Confidence 64 46789999999999999999987888899999999999999998765431 11122356678999999999876
Q ss_pred C-----------CcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCc
Q 004389 666 H-----------PEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQP 734 (757)
Q Consensus 666 ~-----------~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~ 734 (757)
. ++++.++.+.+||++..+++.+..+++++|++|.+++++++++|+++.|++|++++.+...|+.++++
T Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~ 749 (971)
T 2x1g_F 670 TDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCCA 749 (971)
T ss_dssp C-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CCH
T ss_pred CCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCch
Confidence 3 46889999999999999999988889999999999999999999999999999999999999999999
Q ss_pred chHhhHHHHHHHhCCcccc
Q 004389 735 CFLYLSSEVIKVVFPPEVL 753 (757)
Q Consensus 735 ~~l~~~~~~i~~f~~~~~~ 753 (757)
||+++++.++..||.++.+
T Consensus 750 ~~l~l~~~~i~~~~~~~~~ 768 (971)
T 2x1g_F 750 PTLEISKTAIVMFFKDEGC 768 (971)
T ss_dssp HHHHHHHHHHTTCCC----
T ss_pred HHHHHHHHHHHHhCCCcch
Confidence 9999999999999997543
No 3
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=100.00 E-value=1.6e-70 Score=667.03 Aligned_cols=694 Identities=22% Similarity=0.390 Sum_probs=584.8
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
.+++|.++++++|+++|++.|++|+++|++||++|++|.+|..||.. +.+.++|||||++||++|+++|..++++++..
T Consensus 22 ~~~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~-~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ 100 (963)
T 2x19_B 22 TVENVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQP-DKVPEIQYFGASALHIKISRYWSDIPTDQYES 100 (963)
T ss_dssp CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTST-TSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHH
T ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHhCHHhCCHHHHHH
Confidence 47889999999988889999999999999999999999999999985 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCC------CCCchhHHHHHhhhchhhcc
Q 004389 83 LQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNS------HPEFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 83 lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~------~~~~~~~~L~~L~~L~ee~~ 156 (757)
+|+.|++++..+..+|+.||+|+|.+++.++.+++|+.||+ +++++++.+++ ++..+..++.+|+.++||+.
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~--~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~ 178 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPC--AVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQ 178 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTT--HHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccch--HHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHh
Confidence 99999999998765689999999999999999999999999 99999998875 22357899999999999987
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCC
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS 232 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~ 232 (757)
+.+. +.++|..+++.+..+++.|++++.+++++. .+...+++|+.+|+..+ .+ .....++++.+++.+.+
T Consensus 179 ~~~~--~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~--~~--~~~~~~ll~~l~~~l~~ 252 (963)
T 2x19_B 179 TSRL--PQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLE--VP--LQDCEALIQAAFAALQD 252 (963)
T ss_dssp TCCC-----------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSS--CC--GGGTHHHHHHHHHHTTS
T ss_pred cccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCC--CC--cccchHHHHHHHHHhCC
Confidence 7655 567788888888899999999999888664 38889999999999853 22 22357899999999999
Q ss_pred cchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhc--ccCCCHHHHHHHHHHHHHHhhHHHHHHHcC
Q 004389 233 EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLT--DSSKDEEDVKAIARLFADMGDSYVELIATG 310 (757)
Q Consensus 233 ~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~--~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~ 310 (757)
++++++|++|+.++++..... +..+.+..+++.++.+.+.+. ...+|.+.++.+|++|+.+++.+...+.++
T Consensus 253 ~~~~~~a~~~l~~i~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~ 326 (963)
T 2x19_B 253 SELFDSSVEAIVNAISQPDAQ------RYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ 326 (963)
T ss_dssp TTTHHHHHHHHHHHHTCTTGG------GCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHcccccc------cCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcC
Confidence 999999999999999854321 234566777777766544332 124567889999999999999999888743
Q ss_pred ---CchhHHHHHHHhcccccC-----ccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHH
Q 004389 311 ---SDESMLIVHALLEVASHP-----EYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVS 382 (757)
Q Consensus 311 ---~~~~~~~l~~ll~~~~~~-----~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 382 (757)
++.+..++++++.++.+| +++++..+++||+.+.+.....+ . ..++.....++|++.+++.
T Consensus 327 ~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~------~-----~~~~~~~~~~~~~l~~l~~ 395 (963)
T 2x19_B 327 VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFE------A-----EKQAVYQQVYRPVYFQLVD 395 (963)
T ss_dssp GGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSC------H-----HHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhh------h-----hhhHHHHHHHHHHHHHHHH
Confidence 356778899999999874 57789999999999998654211 0 0113456788999999999
Q ss_pred HHHhhccCCCCC--CCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhC
Q 004389 383 LVSFRVQYPQDY--QDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (757)
Q Consensus 383 ~l~~k~~~p~d~--~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (757)
+++.++.||+|. ++|++||.++|.+||++ ++|++.+++.++| +.+++.+.+.+.+.+.+.
T Consensus 396 ~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~-----------------~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~ 457 (963)
T 2x19_B 396 VLLHKAQFPSDEEYGFWSSDEKEQFRIYRVD-----------------ISDTLMYVYEMLG-AELLSNLYDKLGRLLTSS 457 (963)
T ss_dssp HHHHHHSCCCHHHHHTSCHHHHHHHHHHHHH-----------------HHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccccCCChhHHHHHHHHHHH-----------------HHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhc
Confidence 999999999863 36777777889999998 9999999999998 668888888887765332
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.+ +.+|+.+||++++++++++++..+..+.++++++.+++++ +||.||.++++++|+|++|+..+|+ +++++++.
T Consensus 458 ~~-~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~---~l~~vl~~ 533 (963)
T 2x19_B 458 EE-PYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV---MINSVLPL 533 (963)
T ss_dssp CC-SCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH---HHTTTHHH
T ss_pred CC-CCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH---HHHHHHHH
Confidence 12 5789999999999999999998877788999999887776 5899999999999999999998875 99999999
Q ss_pred HHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 004389 540 LTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (757)
Q Consensus 540 l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~ 619 (757)
++++++++. |+.+||+||.+||++|++.+.||++++++.+.++++.+ .++.+.+..+++++|.++.+++.++..++
T Consensus 534 l~~~l~~~~-V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~---~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 534 VLHALGNPE-LSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ---IHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHHTTCGG-GHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHhCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccC---CCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999998866 99999999999999999999999999999999998753 36688999999999999999987788899
Q ss_pred HHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC--------------------CcchHHHHHHHHH
Q 004389 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------------------PEAVADAIQRLWP 679 (757)
Q Consensus 620 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------------------~~~~~~~~~~~~~ 679 (757)
+..++.|+...++++.++.. +++....+...+++++.++++++. ++|+.++.+.+||
T Consensus 610 ~~~l~~~l~~~l~~~~~~~~---~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 610 LHSLISPYIQQLEKLAEEIP---NPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHHHHHHHHHHHHHHSSCS---CHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 99999999999998865331 111223455688899999888762 2568889999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCCcchHhhHHHHHHHhCCcc
Q 004389 680 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQPCFLYLSSEVIKVVFPPE 751 (757)
Q Consensus 680 ~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~~~~l~~~~~~i~~f~~~~ 751 (757)
++..+++.+..++++.|.+|.++++++.++|+++.|++|++++.+...|+.++.++++++++.++..||.++
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~ 758 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEP 758 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCc
Confidence 999999999988999999999999999999999999999999999999999889999999999999999865
No 4
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=100.00 E-value=1.3e-71 Score=662.32 Aligned_cols=686 Identities=14% Similarity=0.207 Sum_probs=550.6
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
+++.+++||+++|+++++ .|++|++||+++|++|++|.+|..+|+. +.++++||||+++|+++|+++|..++++++..
T Consensus 14 dv~~Le~av~~ly~p~~~-~r~~A~~~L~~~q~sp~aw~~~~~iL~~-s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~ 91 (1023)
T 4hat_C 14 DIALLDQVVSTFYQGSGV-QQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1023)
T ss_dssp CHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHCTTGGGGHHHHHHH-CCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred CHHHHHHHHHHHhCCChH-HHHHHHHHHHHHHcCccHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHH
Confidence 467999999999987655 8999999999999999999999999986 56889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcc
Q 004389 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~ 156 (757)
+|+.+++++.+++.+ ++.+++|+|.+++.++++++|+.||+ +++++++.+++++.++..+|.+|+.|+||+.
T Consensus 92 Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~--~l~dL~~~l~~~~~~~~~~L~iL~~L~EEV~ 169 (1023)
T 4hat_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1023)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999886433 57899999999999999999999999 9999999998776678899999999999987
Q ss_pred cc-cccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHH-hccC
Q 004389 157 NY-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTAL-SSLH 231 (757)
Q Consensus 157 ~~-~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~---~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~-~~L~ 231 (757)
+. +..++..||..+++.|...++.|++++.++++.+ ++...+|+|+.+|+.| +|.+.+.++++++.+| ..|.
T Consensus 170 ~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~ 246 (1023)
T 4hat_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT 246 (1023)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC
Confidence 63 3345678899999999999999999999998753 6888999999999997 7777777889999999 8899
Q ss_pred CcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHH------------HhhHHHhcccC-CCHHHHHHHHHHHHH
Q 004389 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQI------------MSLKAHLTDSS-KDEEDVKAIARLFAD 298 (757)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v------------~~l~~~~~~~~-~d~~~~~~~~~l~~~ 298 (757)
+++++++|++||++++++.... +.....+.+..+++.+ ..+.+.+..++ +|.+.++++|++|++
T Consensus 247 ~~~~r~~A~ecL~eIv~~~~~~---~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~ 323 (1023)
T 4hat_C 247 SPDTRAITLKCLTEVSNLKIPQ---DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1023)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCS---SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccccCC---chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHH
Confidence 9999999999999999854211 0001112233233332 23445555443 466889999999999
Q ss_pred HhhHHHHHHHcCCc---hhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHH
Q 004389 299 MGDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (757)
Q Consensus 299 ~~~~~~~~i~~~~~---~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
+|+++...+.+++. .+...++.++.++.+++.++...+++||+.+.+.++..+ .+...|+|
T Consensus 324 ~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~----------------~~~~~~~~ 387 (1023)
T 4hat_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP----------------LKKHIYEE 387 (1023)
T ss_dssp HHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTST----------------TTGGGGHH
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhch----------------HHHHHHHH
Confidence 99999998866532 123345688899999999999999999999999876411 13468999
Q ss_pred HHHHHHHHHHhhccCCCC-------CCCC------ChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcCh
Q 004389 376 AYESLVSLVSFRVQYPQD-------YQDL------SLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG 442 (757)
Q Consensus 376 ~~~~ll~~l~~k~~~p~d-------~~~~------~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~ 442 (757)
+|.+|+.++++||+||++ .++| +.|+.+.|+.+| + +|.+++.+.|
T Consensus 388 ~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R-d--------------------~L~~l~~l~~- 445 (1023)
T 4hat_C 388 ICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER-E--------------------VLVYLTHLNV- 445 (1023)
T ss_dssp HHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH-H--------------------HHHHHHHHCH-
T ss_pred HHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH-H--------------------HHHHHhccCH-
Confidence 999999999999999982 2345 456666776666 3 6778888888
Q ss_pred hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcCCCC-------ChHHHHHHHHH
Q 004389 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP-------QQPQLLQTVCL 514 (757)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~-------~~~~l~~t~~~ 514 (757)
+.+++++.+.+.+.+.. +..+|+.+||++|++|+|++++.++ .+++++++++.|.+++ .++.++.++|+
T Consensus 446 ~~~~~~~~~~l~~~l~~---~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~ 522 (1023)
T 4hat_C 446 IDTEEIMISKLARQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMY 522 (1023)
T ss_dssp HHHHHHHHHHHHHHHSS---TTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHH
Confidence 57999899888776531 1468999999999999999998875 5678888888765554 24678889999
Q ss_pred HHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHhh
Q 004389 515 TIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKL--------CGYLDGLYNVYRTAVN 585 (757)
Q Consensus 515 ~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~~~~~l--------~p~l~~ll~~~~~l~~ 585 (757)
++|+|++|+..||+ +|++++++++++++++ ++|+.+||.||.+||++|+.++ .||+++|++.+.....
T Consensus 523 ~lGry~~wl~~~~~---~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~ 599 (1023)
T 4hat_C 523 VVGQYPRFLKAHWN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTA 599 (1023)
T ss_dssp HHHTCHHHHHHCHH---HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHhccHH---HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHH
Confidence 99999999999986 9999999999999654 3499999999999999999887 4799999999988875
Q ss_pred CcCCCCCChhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhHHHHHHHHHhcCCCcccc----cCcchhhHHHHHHHHH
Q 004389 586 GEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQK----KHPRDLTVHIDRFAYI 660 (757)
Q Consensus 586 ~~~~~~l~~~~~~~l~eai~~vi~~~~~e~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~ 660 (757)
.++.+.+..++||+|.+++++|++. ...++..++.|+...++++.++...+++- +..+.+...+++++.+
T Consensus 600 -----~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v 674 (1023)
T 4hat_C 600 -----DLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAV 674 (1023)
T ss_dssp -----TSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHH
T ss_pred -----hCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999776 66899999999999999998643222210 1123445566777777
Q ss_pred hhhcCCCcchHHHHHHHHHHHHHHHHhcCCCH--HH-----------HHHHHHHHHHHHH-----Hhhhh------hhhh
Q 004389 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDM--RT-----------MESLCRACKYAVR-----TSKRF------MGIT 716 (757)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~v-----------~e~~~~~~~~~~~-----~~~~~------~~p~ 716 (757)
.++++ +++.+.+..+||.+..+.+.+.... .+ ..+.++++++-+- ..+.. ...+
T Consensus 675 ~~~lg--~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~ 752 (1023)
T 4hat_C 675 CTSMG--ADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVL 752 (1023)
T ss_dssp HHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHT
T ss_pred HHHhc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence 77775 6889999999999888776652210 00 1234444433221 12211 4568
Q ss_pred HHHHHHHHHHHHhhc----CCcchHhhHHHHHHHhCC
Q 004389 717 IGAILEEIQGLYQQH----QQPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 717 l~~~~~~l~~~~~~~----~~~~~l~~~~~~i~~f~~ 749 (757)
+|++++.++..|..+ +.+++|++.+.+|.++|.
T Consensus 753 ~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~ 789 (1023)
T 4hat_C 753 VEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH 789 (1023)
T ss_dssp HHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH
Confidence 899999999999987 459999999999999995
No 5
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=100.00 E-value=4.9e-69 Score=635.23 Aligned_cols=710 Identities=15% Similarity=0.228 Sum_probs=545.1
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
+++.+++++.++|++ +++.|++|++||++||++|++|..|..+|.. +.++++||||+++|+++|+++|..++++++..
T Consensus 26 Dv~~Le~lv~~ly~p-~~~~r~qA~~~L~q~q~sp~aw~~~~~iL~~-s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~ 103 (1073)
T 3gjx_A 26 DINLLDNVVNCLYHG-EGAQQRMAQEVLTHLKEHPDAWTRVDTILEF-SQNMNTKYYGLQILENVIKTRWKILPRNQCEG 103 (1073)
T ss_dssp SHHHHHHHHHTTTCS-SHHHHHHHHHHHHTSSCCSCHHHHHTCC----CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred CHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCchHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHH
Confidence 467899999999876 7889999999999999999999999999976 67889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcc
Q 004389 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~ 156 (757)
+|+.|++++.++..+ ++.+++|+|.+++.++++++|+.||+ +++++++.+++++.++..+|.+|+.|+||+.
T Consensus 104 LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~--fi~dLv~~~~~~~~~~~~~L~IL~~L~EEV~ 181 (1073)
T 3gjx_A 104 IKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPT--FISDIVGASRTSESLCQNNMVILKLLSEEVF 181 (1073)
T ss_dssp HHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccH--HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999986433 36788999999999999999999999 9999999887666678899999999999987
Q ss_pred cc-cccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhccCCCCCcccccchhHHHH-HhccC
Q 004389 157 NY-KIAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTA-LSSLH 231 (757)
Q Consensus 157 ~~-~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~---~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~-~~~L~ 231 (757)
+. +..++..||.++++.|...++.|++++..+++.+ ++...+++|+.+|+.| ++.+.+.++++++.+ +..|.
T Consensus 182 d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L~ 258 (1073)
T 3gjx_A 182 DFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFLN 258 (1073)
T ss_dssp TSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTSS
T ss_pred hcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhcC
Confidence 65 2345678899999999999999999999988753 5667777777777776 566677788999988 79999
Q ss_pred CcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHh-----------hHHHhccc-CCCHHHHHHHHHHHHHH
Q 004389 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS-----------LKAHLTDS-SKDEEDVKAIARLFADM 299 (757)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~-----------l~~~~~~~-~~d~~~~~~~~~l~~~~ 299 (757)
+++++++|++||++++++.. ++..+.+..++..++. +.+.+..+ ++|.++++++|++|+++
T Consensus 259 ~~~~r~aA~dcL~eIv~k~~-------~~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~ 331 (1073)
T 3gjx_A 259 VPMFRNVSLKCLTEIAGVSV-------SQYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTF 331 (1073)
T ss_dssp SHHHHHHHHHHHHHHHHSCS-------GGGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccc-------cchHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 99999999999999998742 1223333444444332 22333333 34558899999999999
Q ss_pred hhHHHHHHHcCCc---hhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCccc----chHHHHHHHHHh
Q 004389 300 GDSYVELIATGSD---ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEA----SAEAERSRRLQV 372 (757)
Q Consensus 300 ~~~~~~~i~~~~~---~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 372 (757)
|++|...+.++|+ .....+++++.++.+++.++...||+||+.+.+.+++..++.. +..+ +.....+.+...
T Consensus 332 ~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~-~~~~~~~~~~~~~~~~~~~~ 410 (1073)
T 3gjx_A 332 LKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFST-SASPLLSGSQHFDIPPRRQL 410 (1073)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCC-CCSSCTTSSCCSCSCHHHHT
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccc-cccccccccccccchhHHHH
Confidence 9999999987754 3455678899999999999999999999999999875422100 0000 000001134568
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHH
Q 004389 373 FRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIK 452 (757)
Q Consensus 373 ~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~ 452 (757)
|+|++.+|..+++.||.+|+|.-..++|+.+-|+++|++ +.+. .+.+.+.|++..++ .++++.++..+.+.
T Consensus 411 y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d----~~~~----~ly~~mrd~L~~lt-~l~~~~~~~i~~~~ 481 (1073)
T 3gjx_A 411 YLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKD----TDSI----NLYKNMRETLVYLT-HLDYVDTEIIMTKK 481 (1073)
T ss_dssp THHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSS----CHHH----HHHHHHHHHHHHHH-HHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhh----cchH----HHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 999999999999999999987321122322334455555 2110 01112555655544 34457788888888
Q ss_pred HHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcCCCCC-------hHHHHHHHHHHHHhhHHHHh
Q 004389 453 FVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLPQ-------QPQLLQTVCLTIGAYSKWFD 524 (757)
Q Consensus 453 l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~~-------~~~l~~t~~~~ig~~~~~l~ 524 (757)
+.+.+. ++ ..+|+.+||++|++|+||+.+.++ ++++++++++.|.++|. .+.++.+.|+++|+|++|+.
T Consensus 482 l~~~~~--~~-~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~ 558 (1073)
T 3gjx_A 482 LQNQVN--GT-EWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLR 558 (1073)
T ss_dssp HHHHHT--SC-CCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHhc--CC-CCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHH
Confidence 876542 22 468999999999999999877754 56889999998876653 24688888999999999999
Q ss_pred hCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhh--------cCCHHHHHHHHHHHhhCcCCCCCChh
Q 004389 525 AASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKL--------CGYLDGLYNVYRTAVNGEGSLKVSAE 595 (757)
Q Consensus 525 ~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l--------~p~l~~ll~~~~~l~~~~~~~~l~~~ 595 (757)
.||+ ++.+++++++++++++. .|+.+||.||.+||++|++++ .||+++|++.+..... .++.+
T Consensus 559 ~h~~---~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~-----~l~~~ 630 (1073)
T 3gjx_A 559 AHWK---FLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIIC-----DLQPQ 630 (1073)
T ss_dssp HCHH---HHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHT-----TCCHH
T ss_pred hCHH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHH-----hcCHH
Confidence 9986 99999999999997642 499999999999999999987 3689999998888765 47899
Q ss_pred hHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhHHHHHHHHHhcCCCccccc-C---cchhhHHHHHHHHHhhhcCCCcch
Q 004389 596 DSLHLVEALSMVITELPQVD-AKKALEMLCLPVVTPLQEIINQGPEILQKK-H---PRDLTVHIDRFAYIFRYVNHPEAV 670 (757)
Q Consensus 596 ~~~~l~eai~~vi~~~~~e~-~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~-~---~~~~~~~l~~l~~~~~~~~~~~~~ 670 (757)
....+++|+|.+++++|++. ...++..++.|.++.+++++++...+.+.. . .+.+...+++.+.+..++ ++++
T Consensus 631 ~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~--g~~f 708 (1073)
T 3gjx_A 631 QVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAV--GHPF 708 (1073)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHH--CGGG
T ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhc--chhH
Confidence 99999999999999999886 578999999999999999997543222110 1 122333344444444444 3789
Q ss_pred HHHHHHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHHHH-----Hhhhh------hhhhHHHHHHHHHH
Q 004389 671 ADAIQRLWPIFKAIFDIRAWD-------------MRTMESLCRACKYAVR-----TSKRF------MGITIGAILEEIQG 726 (757)
Q Consensus 671 ~~~~~~~~~~l~~~l~~~~~~-------------~~v~e~~~~~~~~~~~-----~~~~~------~~p~l~~~~~~l~~ 726 (757)
.+.+..+||-+..+...+... .....+.|+++++.+- ..+.. ...++|++++.++.
T Consensus 709 ~~~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~i~pl~~~vl~ 788 (1073)
T 3gjx_A 709 VIQLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLI 788 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHTSHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHHHHHHHHH
Confidence 999999999777665543221 1133466777774332 23332 55888999999999
Q ss_pred HHhh----cCCcchHhhHHHHHHHhCC
Q 004389 727 LYQQ----HQQPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 727 ~~~~----~~~~~~l~~~~~~i~~f~~ 749 (757)
.|.. .+++++|++.+.+|.++|.
T Consensus 789 dY~~~~p~~r~~evL~l~s~iv~k~~~ 815 (1073)
T 3gjx_A 789 DYQRNVPAAREPEVLSTMAIIVNKLGG 815 (1073)
T ss_dssp HHHHSCGGGCCTHHHHHHHHHHHHHGG
T ss_pred HHhcCCcccccHHHHHHHHHHHHHHHh
Confidence 9997 4899999999999999997
No 6
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=100.00 E-value=7.5e-60 Score=575.05 Aligned_cols=697 Identities=14% Similarity=0.205 Sum_probs=528.2
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
.++++.++++++|++ +++.|++|+++|++++++|++|..|..+|.+ +.+.++|||||++||++|+++|..++++++..
T Consensus 14 ~~~~l~~~l~~~~~p-~~~~r~~Ae~~L~~~~~~p~~~~~l~~iL~~-s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ 91 (1049)
T 3m1i_C 14 DIALLDQVVSTFYQG-SGVQQKQAQEILTKFQDNPDAWQKADQILQF-STNPQSKFIALSILDKLITRKWKLLPNDHRIG 91 (1049)
T ss_dssp CHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSTTGGGGHHHHHHH-CSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHH
T ss_pred cHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHhCchHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhhCccCCHHHHHH
Confidence 467899999999865 6678999999999999999999999999986 57889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC------ChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcc
Q 004389 83 LQDSLNTLLKKFHKG------PPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 83 lr~~Ll~~l~~~~~~------~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~ 156 (757)
+|+.+++++.+...+ ++.||+|+|.+++.++.+++|+.||+ +++++++.+++++...+..+.+|+.|+||+.
T Consensus 92 ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~--ll~~L~~~~~~~~~~~~~~l~~L~~l~eev~ 169 (1049)
T 3m1i_C 92 IRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPE--FIPELIGSSSSSVNVCENNMIVLKLLSEEVF 169 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTT--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHccChHHHHHHHHHHHHHHHHHH
Confidence 999999999886423 37899999999999999999999999 9999999987544457789999999999998
Q ss_pred ccc-ccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh---HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHh-ccC
Q 004389 157 NYK-IAARPERRRQFEKELTSQMEVALSTLTACLHIN---ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS-SLH 231 (757)
Q Consensus 157 ~~~-~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~---~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~-~L~ 231 (757)
+.+ ...+..||..+++.+..+++.+++++.++++++ +++..+++|+.+|+.| ++.+.+...++++.+++ .+.
T Consensus 170 ~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~w---i~~~~~~~~~ll~~l~~~~l~ 246 (1049)
T 3m1i_C 170 DFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT 246 (1049)
T ss_dssp TSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh---CCHHHHhhhhHHHHHHHHhCC
Confidence 642 234567788888999999999999999888753 5888999999999987 55555556788998884 456
Q ss_pred CcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHh------------hHHHhccc-CCCHHHHHHHHHHHHH
Q 004389 232 SEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMS------------LKAHLTDS-SKDEEDVKAIARLFAD 298 (757)
Q Consensus 232 ~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~------------l~~~~~~~-~~d~~~~~~~~~l~~~ 298 (757)
+++++.+|++||.++++...... .......+..+++.++. +...+..+ ++|++.++.+|++|++
T Consensus 247 ~~~~~~~a~~~L~~i~~~~~~~~---~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~ 323 (1049)
T 3m1i_C 247 SPDTRAITLKCLTEVSNLKIPQD---NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTT 323 (1049)
T ss_dssp SHHHHHHHHHHHHHHHHCCCCTT---CHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHhCCCCcc---hhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHH
Confidence 88999999999999998743210 00011223334444433 22233323 3456778899999999
Q ss_pred HhhHHHHHHHcCC---chhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHH
Q 004389 299 MGDSYVELIATGS---DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (757)
Q Consensus 299 ~~~~~~~~i~~~~---~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
+++.+...+.+.+ +.+..++++++.++.+++++++..+++||+.+.+++...+ .....++|
T Consensus 324 ~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~----------------~~~~~~~~ 387 (1049)
T 3m1i_C 324 YLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEP----------------LKKHIYEE 387 (1049)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHST----------------TCGGGGHH
T ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhch----------------hHHHHHHH
Confidence 9999988887532 2355678999999999999999999999999998653201 12457889
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCh-hhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHH
Q 004389 376 AYESLVSLVSFRVQYPQDYQDLSL-EDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFV 454 (757)
Q Consensus 376 ~~~~ll~~l~~k~~~p~d~~~~~~-d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~ 454 (757)
++.+++.+++.+|.||+|. .|.+ |+.+.|+++|.+. + ...++++++++|..++.+.| +.+++.+.+.+.
T Consensus 388 ~l~~Lv~~ll~~m~~~ed~-~~~~dd~~e~~r~~~~d~----d----~~~~~~~~~~~L~~l~~~~~-~~~l~~v~~~l~ 457 (1049)
T 3m1i_C 388 ICSQLRLVIIENMVRPEEV-LVVENDEGEIVREFVKES----D----TIQLYKSEREVLVYLTHLNV-IDTEEIMISKLA 457 (1049)
T ss_dssp HHHHHHHHHHHTCCCCTTC-CEEECTTSCEEECSSCCH----H----HHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcce-eeeeCCCCcchHhhhccc----h----HHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHH
Confidence 9999999999999999764 3432 3334444444320 0 01234458999999987666 778998988888
Q ss_pred HhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcCCCC-------ChHHHHHHHHHHHHhhHHHHhhC
Q 004389 455 EGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLPKLP-------QQPQLLQTVCLTIGAYSKWFDAA 526 (757)
Q Consensus 455 ~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~~l~-------~~~~l~~t~~~~ig~~~~~l~~~ 526 (757)
+.+.. +..+|+.+||++|+++++++.+... ++.+++++++.+.+++ +||.++.++|+++|+|++|+..|
T Consensus 458 ~~l~~---~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~ 534 (1049)
T 3m1i_C 458 RQIDG---SEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH 534 (1049)
T ss_dssp HHHTS---SSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC
T ss_pred HHhCC---CCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH
Confidence 77531 2478999999999999999988755 3355788887653322 37888889999999999999998
Q ss_pred CCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHhhCcCCCCCChhhH
Q 004389 527 SSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCRKKLC--------GYLDGLYNVYRTAVNGEGSLKVSAEDS 597 (757)
Q Consensus 527 ~~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~~~~~l~--------p~l~~ll~~~~~l~~~~~~~~l~~~~~ 597 (757)
|+ +++++++.++.+++++ .+|+.+||+||.+||++|++.+. ||++.|++.+..++.. ++.++.
T Consensus 535 ~~---~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~-----~~~~~~ 606 (1049)
T 3m1i_C 535 WN---FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-----LQPQQV 606 (1049)
T ss_dssp HH---HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTT-----SCHHHH
T ss_pred HH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHh-----CCHHHH
Confidence 85 9999999999999875 36999999999999999998886 9999999999998863 678889
Q ss_pred HHHHHHHHHHHhcCCh-HHHHHHHHHhhhhHHHHHHHHHhcCCCccccc-Cc---chhhHHHHHHHHHhhhcCCCcchHH
Q 004389 598 LHLVEALSMVITELPQ-VDAKKALEMLCLPVVTPLQEIINQGPEILQKK-HP---RDLTVHIDRFAYIFRYVNHPEAVAD 672 (757)
Q Consensus 598 ~~l~eai~~vi~~~~~-e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~-~~---~~~~~~l~~l~~~~~~~~~~~~~~~ 672 (757)
..++||+|.++++.|+ +...+++..++.|+++++++++.+...+++.. .. +.+...+++++.+.+.++ +.+.+
T Consensus 607 ~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~--~~f~p 684 (1049)
T 3m1i_C 607 HTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMG--ADFYP 684 (1049)
T ss_dssp HHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHG--GGGHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhh--HHHHH
Confidence 9999999999999984 66789999999999999999886543322211 11 233445566666666665 23434
Q ss_pred HHHHHHHHHHHHHHhc-----------CC----CH--HHHHHHHHHHHHHHHH-------hhhhhhhhHHHHHHHHHHHH
Q 004389 673 AIQRLWPIFKAIFDIR-----------AW----DM--RTMESLCRACKYAVRT-------SKRFMGITIGAILEEIQGLY 728 (757)
Q Consensus 673 ~~~~~~~~l~~~l~~~-----------~~----~~--~v~e~~~~~~~~~~~~-------~~~~~~p~l~~~~~~l~~~~ 728 (757)
.+..+++-+..+++.. +. .+ ...+.+...+.++++. ++..+.|++|++++.++..|
T Consensus 685 ~~~~i~~~~l~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~~~~~~~~l~~~~~~~~~~~l~~ll~~~ 764 (1049)
T 3m1i_C 685 QLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDY 764 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222110 00 00 1122233333333332 24456799999999999999
Q ss_pred hhcCCcc-----hHhhHHHHHHHhCC
Q 004389 729 QQHQQPC-----FLYLSSEVIKVVFP 749 (757)
Q Consensus 729 ~~~~~~~-----~l~~~~~~i~~f~~ 749 (757)
+. ++++ ++++++.++..||.
T Consensus 765 ~~-~~~~~~~~~~l~l~~~ii~~~~~ 789 (1049)
T 3m1i_C 765 MN-NVPDARDAEVLNCMTTVVEKVGH 789 (1049)
T ss_dssp HH-SCGGGCCTHHHHHHHHHHHHHGG
T ss_pred Hh-CCcccccHHHHHHHHHHHHHHHH
Confidence 87 4566 99999999999983
No 7
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=100.00 E-value=1.5e-55 Score=538.35 Aligned_cols=687 Identities=15% Similarity=0.177 Sum_probs=518.3
Q ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHH
Q 004389 4 QNTVKEALNALYHH-PDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRG 82 (757)
Q Consensus 4 ~~~v~~al~~ly~~-~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~ 82 (757)
.++|.++++++|++ +|++.|++|+++|++++++|++|..+..+|.+++.+.++||||+++|+++|+++|..++++++..
T Consensus 10 ~~~l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~ 89 (1204)
T 3a6p_A 10 CEQLVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVY 89 (1204)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 45689999999876 58889999999999999999999998888864467889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcccc
Q 004389 83 LQDSLNTLLKKFHK----GPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNY 158 (757)
Q Consensus 83 lr~~Ll~~l~~~~~----~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~~~ 158 (757)
||+.+++++.+... .++.||+|+|.+++.|+.+++|+.||+ +++++++.+++++..++..+.+|..|+||+.+.
T Consensus 90 Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~--ll~~L~~~~~~~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 90 LKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPD--MLIELDTLSKQGETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHccc
Confidence 99999999987531 478999999999999999999999999 999999988776556789999999999998765
Q ss_pred cccCChHHHHHHHHHHHHhHHHHHHHHHHhhhh---------------------hHHHHHHHHHHHHHhhccCCCCCccc
Q 004389 159 KIAARPERRRQFEKELTSQMEVALSTLTACLHI---------------------NELKEQVLEAFASWLRLKHRIPGSVL 217 (757)
Q Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~---------------------~~~~~~~l~~l~~wi~~~~~~~~~~l 217 (757)
+. ....||+.+++.|..+++.|++++.+++++ .++...+++|+.+|+.| +|.+.+
T Consensus 168 ~~-~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~W---i~~~~i 243 (1204)
T 3a6p_A 168 QT-LPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDW---VSMSHI 243 (1204)
T ss_dssp CC-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTT---SCHHHH
T ss_pred cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhc---cCHHHH
Confidence 43 345788889999999999999888777653 14778899999999987 554444
Q ss_pred cc--chhHHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHH-HHhhHHHh--cc----cCCCHHH
Q 004389 218 AS--HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQ-IMSLKAHL--TD----SSKDEED 288 (757)
Q Consensus 218 ~~--~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~-v~~l~~~~--~~----~~~d~~~ 288 (757)
.. ..+++.++..+.+++++.+|++||++++++.+. ++++.+++..+.+. +-.+.... .. .++|.+.
T Consensus 244 ~~~~~~ll~~l~~~l~~~~lr~~A~ecL~~i~s~~~~-----~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~ 318 (1204)
T 3a6p_A 244 TAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGK-----LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF 318 (1204)
T ss_dssp HTTTSHHHHHHHHGGGCTTTHHHHHHHHHHHHTCCSC-----HHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHH
T ss_pred HhccchHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCC-----hhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHH
Confidence 33 359999999999999999999999999986642 11223333221111 11111211 11 1224578
Q ss_pred HHHHHHHHHHHhhHHHHHHHc-----CCchhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchH
Q 004389 289 VKAIARLFADMGDSYVELIAT-----GSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAE 363 (757)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~i~~-----~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~ 363 (757)
.+.+|++++.+|+.+...+.+ .++.+..++++++.++.||+.+++..+++||+.+.+....
T Consensus 319 ~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~-------------- 384 (1204)
T 3a6p_A 319 LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEIL-------------- 384 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTT--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccc--------------
Confidence 899999999999887766653 3456889999999999999999999999999988765321
Q ss_pred HHHHHHHHhhHHHHHHHHHHH---HhhccCCCCCCC----CC------hhh-hHHHHHhhhcccccCCcchhhhhhhhhh
Q 004389 364 AERSRRLQVFRSAYESLVSLV---SFRVQYPQDYQD----LS------LED-LKEFKHTRYDLACCSSSTLTESVMLIAV 429 (757)
Q Consensus 364 ~~~~~~~~~~~~~~~~ll~~l---~~k~~~p~d~~~----~~------~d~-~~~f~~~R~~~~~~~~s~~~~~~~~~~~ 429 (757)
.....++|++.+|++++ +.|+.||++.+. |. ++| .+.|.+||++ +
T Consensus 385 ----~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~-----------------~ 443 (1204)
T 3a6p_A 385 ----SRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQ-----------------Q 443 (1204)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHH-----------------H
T ss_pred ----cccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHH-----------------H
Confidence 01135789999999999 899999985432 21 112 2578899999 9
Q ss_pred hhHHHhhhhhcChhHHHHHHHHHHHHhHhhC--------------------CCCCCCcchhhHHHHHHHHhhcccCccc-
Q 004389 430 ADVLIDAASVLGGDATLKILYIKFVEGVACC--------------------GNKHNEWRPAEAALFCIRAISTYVSVVE- 488 (757)
Q Consensus 430 ~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~--------------------~~~~~~w~~~Ea~l~~l~~ia~~~~~~~- 488 (757)
+|++++++.+.+ +..+.++.+.+.+.+.+. ...+..|...|+..+++.++++++....
T Consensus 444 ~d~l~~i~~v~p-~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e 522 (1204)
T 3a6p_A 444 GEVMRLACRLDP-KTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLN 522 (1204)
T ss_dssp HHHHHHHHHHCH-HHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCH-HHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998886 556666666554443221 0013468889999999999988873211
Q ss_pred -----cccHHHHHhhcCCC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-------------hH
Q 004389 489 -----AEVMPQVMALLPKL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-------------ED 549 (757)
Q Consensus 489 -----~~~l~~l~~~l~~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~-------------~~ 549 (757)
+..++++++.+.++ +.||.++.+.+.++|+|++|+.+||+ ++++++++++.++.++ +.
T Consensus 523 ~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~---~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~ 599 (1204)
T 3a6p_A 523 REEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPE---FLPQVFSKLFSSVTFETVEESKAPRTRAVRN 599 (1204)
T ss_dssp TTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGG---GHHHHHHHHHHHHHCCTTCSTTSCCCHHHHH
T ss_pred cccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCch---HHHHHHHHHHHhhccCCcccccccccHHHHH
Confidence 13467888887665 35999999999999999999999996 9999999999877541 15
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCC-CChhhHHHHHHHHHHHHhcCChH-HHHHHHHHhhhhH
Q 004389 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK-VSAEDSLHLVEALSMVITELPQV-DAKKALEMLCLPV 627 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~-l~~~~~~~l~eai~~vi~~~~~e-~~~~~l~~l~~~~ 627 (757)
++.+||++|.+||++|+..|.||+++|.+.+..++..+ . ++..++..+++|++.+...++++ +...++..++.|+
T Consensus 600 vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~---~~l~~~e~~~L~eal~~ia~~~~~~~~~~~~l~~ll~P~ 676 (1204)
T 3a6p_A 600 VRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNE---LLLTQMEKCALMEALVLISNQFKNYERQKVFLEELMAPV 676 (1204)
T ss_dssp HHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHST---TTSCHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCc---ccccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998753 4 78899999999999886565554 5557799999999
Q ss_pred HHHHHH-----HHhcCC----------Cc-----ccccCc--chhhHHHHHHHHHhhhc--------------------C
Q 004389 628 VTPLQE-----IINQGP----------EI-----LQKKHP--RDLTVHIDRFAYIFRYV--------------------N 665 (757)
Q Consensus 628 ~~~l~~-----~~~~~~----------~~-----~~~~~~--~~~~~~l~~l~~~~~~~--------------------~ 665 (757)
++.+.+ .++... .. .++... ..+...+..+...++.+ .
T Consensus 677 ~~~w~~~~~~~~~s~~~~f~~~~G~~~~~~~~~~~d~~~~~r~~l~~~~~~l~~~l~r~~~~~~~~~~~~~gf~~~~~~~ 756 (1204)
T 3a6p_A 677 ASIWLSQDMHRVLSDVDAFIAYVGTDQKSCDPGLEDPCGLNRARMSFCVYSILGVVKRTCWPTDLEEAKAGGFVVGYTSS 756 (1204)
T ss_dssp HHHHSCHHHHHHHHCHHHHHHHHTSSCC--CTTCCTHHHHHHHHHHHHHHHHHHHHHHCCCCSSHHHHHHTTCEEEECSS
T ss_pred HHHHccHHHHHhhcCHHHHHHHhCCCCCcccccccchhhhhHHHHHHHHHHHHHHHHHhcCCCChhhhhcCCceeccCCC
Confidence 998874 222211 00 010011 11222222332222221 0
Q ss_pred -C---CcchHHHHHHHHHHHHHHHHhcC--CCHHHHHHHH-------------HHHHHHHHHh-hhhhh-hhHHHHHHHH
Q 004389 666 -H---PEAVADAIQRLWPIFKAIFDIRA--WDMRTMESLC-------------RACKYAVRTS-KRFMG-ITIGAILEEI 724 (757)
Q Consensus 666 -~---~~~~~~~~~~~~~~l~~~l~~~~--~~~~v~e~~~-------------~~~~~~~~~~-~~~~~-p~l~~~~~~l 724 (757)
. .+|+.+.+..+||.+..++..+. .++++.++++ +++..++..- ++... |..+...+.+
T Consensus 757 ~~p~~~~p~~~~i~~ilP~ll~Ll~~~~~l~~p~~~~~l~~~~~~~~~~~~~er~~~~g~~~~~~~~~~~~~~~~~~~~l 836 (1204)
T 3a6p_A 757 GNPIFRNPCTEQILKLLDNLLALIRTHNTLYAPEMLAKMAEPFTKALDMLDAEKSAILGLPQPLLELNDSPVFKTVLERM 836 (1204)
T ss_dssp CCEEECCTTHHHHHHHHHHHHHHHHHHHHTTSHHHHTTSCGGGTTTTSCCHHHHHHHTCCCCCCCCTTCCCSCCCHHHHH
T ss_pred CCccccCchHHHHHHHhHHHHHHHHHHHHhcCcHhhhhcCHHHHHHHhccHHHHHHhcCCCcccccccccCCCcCcHHHH
Confidence 0 26889999999999999998876 6899988888 6655554431 12222 3335667777
Q ss_pred HHHHhhcCCcchHhhHHHH
Q 004389 725 QGLYQQHQQPCFLYLSSEV 743 (757)
Q Consensus 725 ~~~~~~~~~~~~l~~~~~~ 743 (757)
-..+...+.+||.++.+..
T Consensus 837 ~~~~~~~re~~y~~lg~~~ 855 (1204)
T 3a6p_A 837 QRFFSTLYENCFHILGKAG 855 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7888888888998887753
No 8
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=100.00 E-value=2.4e-41 Score=408.70 Aligned_cols=632 Identities=13% Similarity=0.137 Sum_probs=430.8
Q ss_pred CchHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCC------C
Q 004389 1 MELQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE------E 74 (757)
Q Consensus 1 ~~~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~------~ 74 (757)
|..+++|.++++.. .++|++.| |+++|++++++|+.|..+.+++.+++.+.++|++|+++|||+|+++|. .
T Consensus 1 M~d~~~l~~~L~~~-~spd~~~r--Ae~~L~~~~~~p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~ 77 (960)
T 1wa5_C 1 MSDLETVAKFLAES-VIASTAKT--SERNLRQLETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHL 77 (960)
T ss_dssp CCHHHHHHHHHHHT-TSGGGHHH--HHHHHHHHHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBS
T ss_pred CCcHHHHHHHHHHh-cCCCHHHH--HHHHHHHhhcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence 88999999999996 46688777 999999999999999999999987566789999999999999999997 7
Q ss_pred CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhhhchh
Q 004389 75 LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPE 153 (757)
Q Consensus 75 l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~e 153 (757)
++++++..+|+.+++.+.. .++.||+|+|.+++.++.+++|++||+ +++++++.++++ +......|.+|..+++
T Consensus 78 l~~~~k~~ik~~ll~~l~~---~~~~ir~~l~~~ia~ia~~d~p~~Wp~--ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 78 LPANNVELIKKEIVPLMIS---LPNNLQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHhhCccchhH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999987 568999999999999999999999999 999999998764 3456788889988887
Q ss_pred hcccccccCChHHHHHHHHHHHHhHHHHHHHHHHh---hhhh-----------HHHHHHHHHHHHHhhccCCCCCccccc
Q 004389 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTAC---LHIN-----------ELKEQVLEAFASWLRLKHRIPGSVLAS 219 (757)
Q Consensus 154 e~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~---l~~~-----------~~~~~~l~~l~~wi~~~~~~~~~~l~~ 219 (757)
+.... . .+++.+.+++..+....+.+++++... ++++ ++...++|++.+-+.. .+|...
T Consensus 153 ~~~~~-~-~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~--~~~~~~--- 225 (960)
T 1wa5_C 153 RWRPL-F-RSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQ--DIPEFF--- 225 (960)
T ss_dssp GGTTS-C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSS--CCCHHH---
T ss_pred HHHHh-h-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhc--cchHHH---
Confidence 65320 0 123445566666777778777766543 3221 1223345555432211 122100
Q ss_pred chhHHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCC--HHHHHHHHHHHH
Q 004389 220 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKD--EEDVKAIARLFA 297 (757)
Q Consensus 220 ~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d--~~~~~~~~~l~~ 297 (757)
.+....++..+..++.........+.++ .+.. +...+.+++.++
T Consensus 226 -------------~~~~~~~~~~~~~~l~~~~p~~~~d~d~---------------------~~~~~~~~vk~~~~~~l~ 271 (960)
T 1wa5_C 226 -------------EDNIQVGMGIFHKYLSYSNPLLEDPDET---------------------EHASVLIKVKSSIQELVQ 271 (960)
T ss_dssp -------------HHTHHHHHHHHHHHHSCCSCCCC---------------------------CCCHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCCCCcccCCccc---------------------ccccHHHHHHHHHHHHHH
Confidence 0012223333333332211000000000 0000 112346677777
Q ss_pred HHhhHHHHHHHcCCchhHHHHHHHhcccc-----cCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHh
Q 004389 298 DMGDSYVELIATGSDESMLIVHALLEVAS-----HPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQV 372 (757)
Q Consensus 298 ~~~~~~~~~i~~~~~~~~~~l~~ll~~~~-----~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (757)
.+.+.+...+. +....+++.++.... ..++.+...+++||..+.+.- .....
T Consensus 272 ~l~~~~~~~f~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~--------------------~~~~~ 328 (960)
T 1wa5_C 272 LYTTRYEDVFG---PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP--------------------KYFEI 328 (960)
T ss_dssp HHHHHCHHHHH---HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH--------------------HHHGG
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH--------------------hHHHH
Confidence 77776665553 233455555555433 225678899999998876421 12345
Q ss_pred hH--HHHHHHH-HHHHhhccCCC-CCCCCChhhhHHHHHhhhcccc-cCCcchhhhhhhhhhhhHHHhhhhhcChhHHHH
Q 004389 373 FR--SAYESLV-SLVSFRVQYPQ-DYQDLSLEDLKEFKHTRYDLAC-CSSSTLTESVMLIAVADVLIDAASVLGGDATLK 447 (757)
Q Consensus 373 ~~--~~~~~ll-~~l~~k~~~p~-d~~~~~~d~~~~f~~~R~~~~~-~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~ 447 (757)
++ |++.+++ .+++..|.|++ |.+.|++|+ ++| .|++... +.. ++|+++++++..++...| +.+++
T Consensus 329 ~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp-~e~--i~~d~e~~d~~------s~R~aa~~~L~~l~~~~~-~~v~~ 398 (960)
T 1wa5_C 329 FNNESAMNNITEQIILPNVTLREEDVELFEDDP-IEY--IRRDLEGSDTD------TRRRACTDFLKELKEKNE-VLVTN 398 (960)
T ss_dssp GCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH-HHH--HHHHHHC----------CHHHHHHHHHHHHHHHCH-HHHHH
T ss_pred HcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH-HHH--HHhccCccccc------CcHHHHHHHHHHHHHHcc-hhHHH
Confidence 55 8999999 68899999965 456676554 444 3333221 111 367789999999999988 66776
Q ss_pred HHHHHHHHhHhh-CCCCCCCcchhhHHHHHHHHhhcccCc---cccc-----cHHHH-----HhhcCCC-CChHHHHHHH
Q 004389 448 ILYIKFVEGVAC-CGNKHNEWRPAEAALFCIRAISTYVSV---VEAE-----VMPQV-----MALLPKL-PQQPQLLQTV 512 (757)
Q Consensus 448 ~l~~~l~~~~~~-~~~~~~~w~~~Ea~l~~l~~ia~~~~~---~~~~-----~l~~l-----~~~l~~l-~~~~~l~~t~ 512 (757)
.+.+.+.+.+.+ ..++..+|+.+||+++++++++++... .... .+..+ ++.+..- +.||.||.++
T Consensus 399 ~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a 478 (960)
T 1wa5_C 399 IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDA 478 (960)
T ss_dssp HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHH
Confidence 666666555432 112246799999999999999876421 1111 23333 2223221 2499999999
Q ss_pred HHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHH-----------hhhhhcCCHHHHHHHH
Q 004389 513 CLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDD-----------CRKKLCGYLDGLYNVY 580 (757)
Q Consensus 513 ~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~-----------~~~~l~p~l~~ll~~~ 580 (757)
|+++|+|++|+ ++ +++..+++.+++++.++. .|+.+||+||.+||+. ++..+.||++++++.+
T Consensus 479 ~~~lg~~~~~~--~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L 553 (960)
T 1wa5_C 479 IKYIYTFRNQL--TK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNL 553 (960)
T ss_dssp HHHHHHTGGGS--CH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHH
T ss_pred HHHHHHHHhhC--CH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHH
Confidence 99999999998 34 389999999999998763 6999999999999984 3567899999999999
Q ss_pred HHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHH
Q 004389 581 RTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYI 660 (757)
Q Consensus 581 ~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 660 (757)
..+++..++...+..+...++++++.++..++ +...+++..++.+++..+++..++ ++ ........+++++.+
T Consensus 554 ~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~-~~~~p~~~~l~~~L~~~l~~~~~~----~~--~~~~~~~~~e~l~~l 626 (960)
T 1wa5_C 554 IALILKHGSSPEKLAENEFLMRSIFRVLQTSE-DSIQPLFPQLLAQFIEIVTIMAKN----PS--NPRFTHYTFESIGAI 626 (960)
T ss_dssp HHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT-TTTGGGHHHHHHHHHHHHHHHTTS----CC--CHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcccccHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhC----CC--CcHHHHHHHHHHHHH
Confidence 99987521000012256799999999999876 455677777777777777665432 11 222345688999999
Q ss_pred hhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH--HHHhh
Q 004389 661 FRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQ--GLYQQ 730 (757)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~--~~~~~ 730 (757)
++.. .|+++..+.+.+||++..++++.. .++.+.++.++..++... +.+.|+++.+++.+. ..++.
T Consensus 627 ~~~~-~~~~~~~~~~~~~p~~~~iL~~~~--~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~l~~~~~~~~ 694 (960)
T 1wa5_C 627 LNYT-QRQNLPLLVDSMMPTFLTVFSEDI--QEFIPYVFQIIAFVVEQS-ATIPESIKPLAQPLLAPNVWEL 694 (960)
T ss_dssp HHTS-CGGGHHHHHHHHHHHHHHHHHTTC--TTTHHHHHHHHHHHHHHC-SSCCTTTGGGHHHHTSGGGGCC
T ss_pred HhcC-CcchHHHHHHHHHHHHHHHHHhhh--HhhHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHcCHHHhcC
Confidence 9984 367888999999999999998754 456777888888877765 556666666666665 44443
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=100.00 E-value=2.7e-36 Score=361.16 Aligned_cols=616 Identities=14% Similarity=0.181 Sum_probs=436.4
Q ss_pred hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 004389 3 LQNTVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (757)
Q Consensus 3 ~~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~ 81 (757)
..+++.++++..+ ++|++.|++|+++|++++++|+.|.++..++.. .+.+.++|++|+++|||.|+++|..++++++.
T Consensus 11 ~~~~l~~~l~~~~-s~d~~~r~~Ae~~L~~~~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~ 89 (852)
T 4fdd_A 11 GLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTD 89 (852)
T ss_dssp HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHH
T ss_pred hHHHHHHHHHHHh-CcCHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHH
Confidence 4567888888885 569999999999999999999999999999984 46778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhcccccc
Q 004389 82 GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNYKI 160 (757)
Q Consensus 82 ~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~~~~~~ 160 (757)
.+|+.+++.+.. .++.||++++.+++.++.+++++.||+ +++.+.+.+++.. ......+.+|..+.++.....
T Consensus 90 ~ik~~ll~~l~~---~~~~vr~~~a~~i~~ia~~~~~~~wp~--ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~- 163 (852)
T 4fdd_A 90 FIKSECLNNIGD---SSPLIRATVGILITTIASKGELQNWPD--LLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL- 163 (852)
T ss_dssp HHHHHHHTTTTC---SSHHHHHHHHHHHHHHHHHTTTTTCTT--HHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHH-
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHhcCccccHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHh-
Confidence 999999998753 577999999999999999888899999 9999999887643 345677888877777653210
Q ss_pred cCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcchHHH
Q 004389 161 AARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEILSEA 238 (757)
Q Consensus 161 ~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~~~~ 238 (757)
. .+.+....+.+++.+.+.+.++ +++..+++|+..++.. .+.
T Consensus 164 -----~----~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~---~~~------------------------ 207 (852)
T 4fdd_A 164 -----D----SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS---RTQ------------------------ 207 (852)
T ss_dssp -----H----HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT---TCH------------------------
T ss_pred -----c----hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc---ccH------------------------
Confidence 0 0001112344444444444432 4555566665544331 000
Q ss_pred HHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHH
Q 004389 239 SVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIV 318 (757)
Q Consensus 239 a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l 318 (757)
.....+..+++.+..+ ..++|++..+..++.+..+++.+...+. +....++
T Consensus 208 ---------------------~~~~~~~~~l~~l~~~-----~~d~~~~vr~~a~~~L~~l~~~~~~~~~---~~l~~l~ 258 (852)
T 4fdd_A 208 ---------------------ALMLHIDSFIENLFAL-----AGDEEPEVRKNVCRALVMLLEVRMDRLL---PHMHNIV 258 (852)
T ss_dssp ---------------------HHHTSHHHHHHHHHHH-----HTCCCHHHHHHHHHHHHHHHHHCHHHHG---GGHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHHHHhCHHHHH---HHHHHHH
Confidence 0001111222222221 1245666777888888888887776664 2456788
Q ss_pred HHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCC-
Q 004389 319 HALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDL- 397 (757)
Q Consensus 319 ~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~- 397 (757)
+.++.+..+++++++..+++||..+++... ....++|++.+++..++.++.|+++...|
T Consensus 259 ~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~--------------------~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 259 EYMLQRTQDQDENVALEACEFWLTLAEQPI--------------------CKDVLVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTSTT--------------------HHHHHTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHhcchh--------------------HHHHHHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 888888888889999999999998765210 12345778889999999999886532111
Q ss_pred --C--hhhh--HHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhh
Q 004389 398 --S--LEDL--KEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAE 471 (757)
Q Consensus 398 --~--~d~~--~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~E 471 (757)
| +|+. +.+.. +..|++++.++..++...| +.+++.+.+.+.+.+. +.+|+.++
T Consensus 319 ~~d~~ed~~~dd~~~~---------------~~vr~~a~~~L~~la~~~~-~~~~~~l~~~l~~~l~-----~~~~~~R~ 377 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISD---------------WNLRKCSAAALDVLANVYR-DELLPHILPLLKELLF-----HHEWVVKE 377 (852)
T ss_dssp HC------------CC---------------CCHHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHT-----CSSHHHHH
T ss_pred cCCccccccccccccc---------------chHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhc-----CCCHHHHH
Confidence 0 1111 11111 1123347788888888887 5677777777776652 46799999
Q ss_pred HHHHHHHHhhcccCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-
Q 004389 472 AALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (757)
Q Consensus 472 a~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~- 548 (757)
+++++++++++++...-..+++.+++.+. .+ ..++.||.++++++|+|++|+...+. ..++..+++.+++++.++.
T Consensus 378 aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-~~~~~~ll~~L~~~L~d~~~ 456 (852)
T 4fdd_A 378 SGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP-DTYLKPLMTELLKRILDSNK 456 (852)
T ss_dssp HHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCT-TTTHHHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHhCCCH
Confidence 99999999999886544456777777653 23 24899999999999999999976432 1488999999999886543
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHH-HHHHHHHhhhhH
Q 004389 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD-AKKALEMLCLPV 627 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~-~~~~l~~l~~~~ 627 (757)
.|+..|+.||.++|+.++..+.||++.++..+...++. ........++++++.++..+++.- ...++..++.++
T Consensus 457 ~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-----~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l 531 (852)
T 4fdd_A 457 RVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-----YQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHH
Confidence 59999999999999999999999999999999998864 345666778999999988765432 235777777666
Q ss_pred HHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhc---------------CCCH
Q 004389 628 VTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIR---------------AWDM 692 (757)
Q Consensus 628 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------------~~~~ 692 (757)
++.+..+ .... ......+++++.+...++. .+.++...+++.+..++... ..+.
T Consensus 532 ~~~~~~l-~d~~--------~~~~~~~~~l~~i~~~~g~--~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~ 600 (852)
T 4fdd_A 532 IQKWNML-KDED--------KDLFPLLECLSSVATALQS--GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDK 600 (852)
T ss_dssp HHHHHHS-CTTC--------TTHHHHHHHHHHHHHHHGG--GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCT
T ss_pred HHHHHhc-cccc--------HHHHHHHHHHHHHHHHHhH--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcc
Confidence 6654332 2111 1122467777777777653 55666666666555554432 1256
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhH--HHHHHHHHHHHhhcC---CcchHhhHHHHHHHhC
Q 004389 693 RTMESLCRACKYAVRTSKRFMGITI--GAILEEIQGLYQQHQ---QPCFLYLSSEVIKVVF 748 (757)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~~~p~l--~~~~~~l~~~~~~~~---~~~~l~~~~~~i~~f~ 748 (757)
+++..++.+++.+++.+|.++.|++ +.+++.+...++... ..++..+++.++..+|
T Consensus 601 ~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 661 (852)
T 4fdd_A 601 DFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF 661 (852)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh
Confidence 7888899999999999999999998 788998888775321 1245667777776665
No 10
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=100.00 E-value=7.1e-34 Score=341.37 Aligned_cols=634 Identities=13% Similarity=0.126 Sum_probs=443.4
Q ss_pred CchHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCC-----
Q 004389 1 MELQNTVKEALNAL-YHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDV----- 72 (757)
Q Consensus 1 ~~~~~~v~~al~~l-y~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w----- 72 (757)
|.. +++.++|..+ + ++|++.|++|+++|++++++ |+.|..+.+++.+.+.+.++|++|+++||++++++|
T Consensus 1 Md~-~~l~~~L~~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~ 78 (861)
T 2bpt_A 1 MST-AEFAQLLENSIL-SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ 78 (861)
T ss_dssp CCH-HHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred CCH-HHHHHHHHHccc-CcCHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcChHHHH
Confidence 554 5799999998 6 56999999999999999986 999999999998644678999999999999998875
Q ss_pred ------CC-CChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--CCchh
Q 004389 73 ------EE-LPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--PEFVP 142 (757)
Q Consensus 73 ------~~-l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~W~~~~~~~~l~~~~~~~--~~~~~ 142 (757)
.. ++++++..+|+.+++.+.. .+..+|++++.+++.++.+++| +.||+ +++.+++.+++. +....
T Consensus 79 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~~p~~~w~~--ll~~L~~~l~~~~~~~~r~ 153 (861)
T 2bpt_A 79 QFAQRWITQVSPEAKNQIKTNALTALVS---IEPRIANAAAQLIAAIADIELPHGAWPE--LMKIMVDNTGAEQPENVKR 153 (861)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHGGGTCCHH--HHHHHHHHTSTTSCHHHHH
T ss_pred HHHHhHhhhCCHHHHHHHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhcCCCHHHHH
Confidence 54 9999999999999998765 5688999999999999998877 49999 999999998764 23457
Q ss_pred HHHHHhhhchhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhccCCCCCcccc
Q 004389 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLA 218 (757)
Q Consensus 143 ~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~l~~wi~~~~~~~~~~l~ 218 (757)
..+.+|..+++++.... | .+..+.+.+++.+...+.++ +++..+++|+..|+.+. ... +.
T Consensus 154 ~al~~l~~l~~~~~~~~-------~-----~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~---~~~-~~ 217 (861)
T 2bpt_A 154 ASLLALGYMCESADPQS-------Q-----ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI---KNN-ME 217 (861)
T ss_dssp HHHHHHHHHHHTSSTTS-------S-----TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC---HHH-HT
T ss_pred HHHHHHHHHHHcCChhh-------h-----HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-cc
Confidence 78899999988764210 0 12345666777776666543 58888999999887752 100 00
Q ss_pred cchhHHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHH
Q 004389 219 SHPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (757)
Q Consensus 219 ~~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~ 298 (757)
... ....+++.+.. .+ .+.+.+..+..++.+..
T Consensus 218 -----------------------------------------~~~-~~~~ll~~l~~---~~--~~~~~~~r~~a~~~l~~ 250 (861)
T 2bpt_A 218 -----------------------------------------REG-ERNYLMQVVCE---AT--QAEDIEVQAAAFGCLCK 250 (861)
T ss_dssp -----------------------------------------SHH-HHHHHHHHHHH---HH--TCSCHHHHHHHHHHHHH
T ss_pred -----------------------------------------Chh-HHHHHHHHHHH---Hh--cCCCHHHHHHHHHHHHH
Confidence 000 00001111100 01 12334444456666666
Q ss_pred HhhHHHHHHHcCCchhH-HHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHH
Q 004389 299 MGDSYVELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAY 377 (757)
Q Consensus 299 ~~~~~~~~i~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (757)
+++.+...+. +.+. .+++.++.....++++++..+++||..+.+.......+ ..+... .........++++
T Consensus 251 l~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~ 322 (861)
T 2bpt_A 251 IMSKYYTFMK---PYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYE---LAQFPQ--SPLQSYNFALSSI 322 (861)
T ss_dssp HHHHHGGGCH---HHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHH---HHHCTT--CSCCCCCHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhh---hhhccC--CchhhHHHHHHHH
Confidence 6655543222 1233 55666677777788899999999999988754210000 000000 0000011346677
Q ss_pred HHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhH
Q 004389 378 ESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGV 457 (757)
Q Consensus 378 ~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~ 457 (757)
..++..++..+..+++.+ + | +++ ..|.. +.+++..++..+| +.++..+.+.+.+.+
T Consensus 323 ~~il~~ll~~l~~~~~d~-~--d--~~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~l~~~l~~~l 378 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDP-E--D--DDW-NVSMS-----------------AGACLQLFAQNCG-NHILEPVLEFVEQNI 378 (861)
T ss_dssp HHHHHHHHHHTTCCCCC--C--C--CCC-HHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccc-c--c--ccC-cHHHH-----------------HHHHHHHHHHHcc-HhHHHHHHHHHHHHc
Confidence 888888888887764311 1 1 112 23444 7888888888888 556777777776654
Q ss_pred hhCCCCCCCcchhhHHHHHHHHhhcccC-ccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHH
Q 004389 458 ACCGNKHNEWRPAEAALFCIRAISTYVS-VVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILA 534 (757)
Q Consensus 458 ~~~~~~~~~w~~~Ea~l~~l~~ia~~~~-~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~ 534 (757)
. +.+|+.+++++++++++++++. ..-.++++.+++.+. .+ ..++.||.++++++|+++.++..+-....+++
T Consensus 379 ~-----~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 453 (861)
T 2bpt_A 379 T-----ADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLP 453 (861)
T ss_dssp T-----CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHH
T ss_pred C-----CCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHH
Confidence 2 4679999999999999998875 222345666666543 22 24899999999999999999975310013789
Q ss_pred HHHHHHHhccCCChHHHHHHHHHHHHHHHHhh----hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 535 SVLSILTSGMSTSEDTAAAAALAFRHICDDCR----KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 535 ~~l~~l~~~l~~~~~v~~~Aa~al~~l~~~~~----~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
.+++.++++++++..++..|+.++..+|+.|. ..+.||++.++..+.+.+...+ .+...+..++++++.++..
T Consensus 454 ~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d---~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 454 GVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID---NEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC---CGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC---cchHHHHHHHHHHHHHHHH
Confidence 99999999887765699999999999999986 5688999999999998886421 2245688999999999999
Q ss_pred CChHHHHHHHHHhhhhHHHHHHHHHhcCCC--c-cc-ccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 004389 611 LPQVDAKKALEMLCLPVVTPLQEIINQGPE--I-LQ-KKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD 686 (757)
Q Consensus 611 ~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~--~-~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 686 (757)
.+. ...+++..++.+++..+.+.+..... + .+ +.........++.++.+++.++. .+.++...++|.+..+++
T Consensus 531 ~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l~ 607 (861)
T 2bpt_A 531 ATD-TVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGLFFRLLE 607 (861)
T ss_dssp CCG-GGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHHHHHHHH
T ss_pred cch-hhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHc
Confidence 875 45678888999999888876432110 0 00 00111234567888888887763 455677888998888887
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC---cchHhhHHHHHHHhC
Q 004389 687 IRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKVVF 748 (757)
Q Consensus 687 ~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---~~~l~~~~~~i~~f~ 748 (757)
....+ .+++.++.+++.+...+|+++.||++.+++.+...+..... ...+.+++.++..+|
T Consensus 608 ~~~~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~ 671 (861)
T 2bpt_A 608 KKDSA-FIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLE 671 (861)
T ss_dssp STTGG-GTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG
T ss_pred cCCCC-cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhc
Confidence 63222 78999999999999999999999999999999988853221 235566666666655
No 11
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=100.00 E-value=1.5e-30 Score=313.13 Aligned_cols=631 Identities=13% Similarity=0.130 Sum_probs=428.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcC--hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh-----------cCC
Q 004389 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHT--IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQ-----------RDV 72 (757)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s--~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~-----------~~w 72 (757)
++.+++..++ ++|++.|++|+++|++++++ |+.|..+..++.+++.+..+|++|+++||+++. ++|
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~A~~~L~~~~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w 80 (876)
T 1qgr_A 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (876)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhh
Confidence 4678888875 67999999999999999987 999999999998644578999999999999985 458
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC--C-CchhHHHHHh
Q 004389 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH--P-EFVPGFLELL 148 (757)
Q Consensus 73 ~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~W~~~~~~~~l~~~~~~~--~-~~~~~~L~~L 148 (757)
..++++.+..+|+.+++.+.. .+..+ ++++.+++.++...++ +.||+ +++.+.+.+++. . ......+.+|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~~-~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~r~~al~~l 154 (876)
T 1qgr_A 81 LAIDANARREVKNYVLHTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (876)
T ss_dssp HTSCHHHHHHHHHHHHHHTTT---CCSSS-CHHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhCC---CcHHH-HHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 899999999999999998765 34456 9999999999988765 79999 999999988654 2 3456788899
Q ss_pred hhchhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhccCCCCCcccccchhHH
Q 004389 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (757)
Q Consensus 149 ~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~ 224 (757)
..+++++. + +.+..+.+.+++.+.+.+.++ +++..+++|+..|+.+. +.. +.
T Consensus 155 ~~l~~~~~-------~-------~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~~-~~------ 210 (876)
T 1qgr_A 155 GYICQDID-------P-------EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KAN-FD------ 210 (876)
T ss_dssp HHHHHHSC-------H-------HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC---HHH-HT------
T ss_pred HHHHHhcC-------H-------hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH---HHH-HH------
Confidence 88887752 1 124566777777777777653 57788889998887641 100 00
Q ss_pred HHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHH
Q 004389 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (757)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~ 304 (757)
... ....+++.+.. .. .+.|++.....++.+..+++.+.
T Consensus 211 -----------------------------------~~~-~~~~il~~l~~----~~-~~~~~~vr~~a~~~l~~l~~~~~ 249 (876)
T 1qgr_A 211 -----------------------------------KES-ERHFIMQVVCE----AT-QCPDTRVRVAALQNLVKIMSLYY 249 (876)
T ss_dssp -----------------------------------SHH-HHHHHHHHHHH----HT-TCSSHHHHHHHHHHHHHHHHHSG
T ss_pred -----------------------------------hHH-HHHHHHHHHHH----Hc-CCCCHHHHHHHHHHHHHHHHHhH
Confidence 000 00001111110 00 12233444455566665555443
Q ss_pred HHHHcCCchhH-HHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHH-H--HHHHHhhHHHHHHH
Q 004389 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAE-R--SRRLQVFRSAYESL 380 (757)
Q Consensus 305 ~~i~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l 380 (757)
..+. +.+. .+++.++....+++++++..+++||..+.+...... .+.+....+. . .......++++..+
T Consensus 250 ~~~~---~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l 322 (876)
T 1qgr_A 250 QYME---TYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA----IEASEAAEQGRPPEHTSKFYAKGALQYL 322 (876)
T ss_dssp GGCH---HHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHSSCCSSCCCCHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh----hhhccccccCCCccchhHHHHHHHHHHH
Confidence 2221 1122 456777777777788999999999999987542100 0000000000 0 00112345566777
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhC
Q 004389 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (757)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (757)
+..++..+...++.+ + | +++ ..|.. +.+++..++..+| +.+++.+.+.+.+.+.
T Consensus 323 l~~ll~~l~~~~~d~--~-~--~~~-~~r~~-----------------a~~~l~~l~~~~~-~~~~~~~l~~l~~~l~-- 376 (876)
T 1qgr_A 323 VPILTQTLTKQDEND--D-D--DDW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-- 376 (876)
T ss_dssp HHHHHHHTTCCCSSC--C-T--TCC-CHHHH-----------------HHHHHHHHHHHHG-GGGHHHHHHHHHHHTT--
T ss_pred hHHHHHHhhcccccc--c-c--ccc-HHHHH-----------------HHHHHHHHHHHCc-HhhHHHHHHHHHHHcc--
Confidence 887877776433211 1 1 111 23433 7788888887777 5566667766665541
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHH
Q 004389 461 GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (757)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l 537 (757)
+.+|+.+++++++++.+++++.++ -.++++++++.+. .+ ..++.||.++++++|+|++++........+++.++
T Consensus 377 ---~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 377 ---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp ---CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHH
Confidence 468999999999999999987632 2345555555442 22 24899999999999999999865210113899999
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHhh--------------hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHH
Q 004389 538 SILTSGMSTSEDTAAAAALAFRHICDDCR--------------KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA 603 (757)
Q Consensus 538 ~~l~~~l~~~~~v~~~Aa~al~~l~~~~~--------------~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~ea 603 (757)
+.+++++.++..|+..|+.++..+++.++ ..+.||++.++..+...+...+. -....+..++++
T Consensus 454 ~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~--~~~~~r~~~~~~ 531 (876)
T 1qgr_A 454 QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDG--HQNNLRSSAYES 531 (876)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSS--CSTTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCc--chhhHHHHHHHH
Confidence 99999998776699999999999999886 34889999999999998864311 013456789999
Q ss_pred HHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccC----cchhhHHHHHHHHHhhhcCCCcchHHHHHHHHH
Q 004389 604 LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH----PRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWP 679 (757)
Q Consensus 604 i~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 679 (757)
++.++...+. ...+++..++.+++..+...+........+.. .......+..++.+.+.++. +.+.+++..++|
T Consensus 532 l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~l~~ 609 (876)
T 1qgr_A 532 LMEIVKNSAK-DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQH-QDALQISDVVMA 609 (876)
T ss_dssp HHHHHHTCCS-TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCH-HHHHTTHHHHHH
T ss_pred HHHHHHHCch-hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhCh-hhhhHHHHHHHH
Confidence 9999999885 45678889999998888876532211000001 11123456777777776641 345667788888
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcCC----cchHhhHHHHHHHhC
Q 004389 680 IFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKVVF 748 (757)
Q Consensus 680 ~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~----~~~l~~~~~~i~~f~ 748 (757)
.+..++....+...+++.++.+++.++..+|..+.|+++.+++.+...+..... ...+++++.++...|
T Consensus 610 ~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~ 682 (876)
T 1qgr_A 610 SLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ 682 (876)
T ss_dssp HHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH
Confidence 888777654222478899999999999999999999999999999888765422 235667777766665
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.94 E-value=4.2e-25 Score=245.15 Aligned_cols=432 Identities=13% Similarity=0.137 Sum_probs=294.9
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--ChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcC-----------C
Q 004389 6 TVKEALNALYHHPDDAVRMQADRWLQDFQH--TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRD-----------V 72 (757)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~--s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~-----------w 72 (757)
++.+++..++ ++|++.|++|+++|+++++ .|+.|..+..++.+++.+.++|++|+++||+.++++ |
T Consensus 2 ~l~~~L~~~~-s~d~~~r~~Ae~~L~~~~~~~~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~ 80 (462)
T 1ibr_B 2 ELITILEKTV-SPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRW 80 (462)
T ss_dssp CHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred cHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhh
Confidence 4677888875 6799999999999999998 599999999999874457899999999999999887 5
Q ss_pred CCCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCC---CCchhHHHHHh
Q 004389 73 EELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSH---PEFVPGFLELL 148 (757)
Q Consensus 73 ~~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~W~~~~~~~~l~~~~~~~---~~~~~~~L~~L 148 (757)
..++++++..+|+.|++.+.. .+..+ ++++.+++.++.++++ +.||+ +++.+++.+++. +......+.+|
T Consensus 81 ~~l~~~~~~~ik~~ll~~l~~---~~~~v-~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~l~~~~~~~~~r~~al~~l 154 (462)
T 1ibr_B 81 LAIDANARREVKNYVLQTLGT---ETYRP-SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAI 154 (462)
T ss_dssp HTSCHHHHHHHHHHHHHHTTC---CCSSS-CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhCC---CCchh-hHHHHHHHHHHHHhccccccHH--HHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 789999999999999998765 44567 9999999999998876 48999 999999988754 23457889999
Q ss_pred hhchhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh----HHHHHHHHHHHHHhhccCCCCCcccccchhHH
Q 004389 149 TVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN----ELKEQVLEAFASWLRLKHRIPGSVLASHPLVL 224 (757)
Q Consensus 149 ~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~----~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~ 224 (757)
..++++.... .+..+.+.+++.+..++.++ +++..+++|+.+|+.+. .. ...
T Consensus 155 ~~l~~~~~~~--------------~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~---~~-~~~------ 210 (462)
T 1ibr_B 155 GYICQDIDPE--------------QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT---KA-NFD------ 210 (462)
T ss_dssp HHHHHHSCGG--------------GTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT---HH-HHT------
T ss_pred HHHHHhCCch--------------hhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH---HH-hhh------
Confidence 9998876311 12345566777777776543 57888889988887641 00 000
Q ss_pred HHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHH
Q 004389 225 TALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYV 304 (757)
Q Consensus 225 ~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~ 304 (757)
. ......+++.+. .. ..+.|++..+.+++.+..+++.+.
T Consensus 211 -----------------------------------~-~~~~~~l~~~l~----~~-~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 211 -----------------------------------K-ESERHFIMQVVC----EA-TQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp -----------------------------------S-HHHHHHHHHHHH----HH-TTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred -----------------------------------h-hHHHHHHHHHHH----Hh-cCCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 000000111111 11 123455666678888888877765
Q ss_pred HHHHcCCchhH-HHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccc---cCcccchHHHHHHHHHhhHHHHHHH
Q 004389 305 ELIATGSDESM-LIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYIS---FGNEASAEAERSRRLQVFRSAYESL 380 (757)
Q Consensus 305 ~~i~~~~~~~~-~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 380 (757)
..+.. .+. .+++.++......++++...+++||..+.+.......+.. -+..+.. ......+++++..+
T Consensus 250 ~~~~~---~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l 322 (462)
T 1ibr_B 250 QYMET---YMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPE----HTSKFYAKGALQYL 322 (462)
T ss_dssp GGCTT---TTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSS----CCCCCHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcc----chhHHHHHHHhhhc
Confidence 44432 233 5667777777777889999999999999875421000000 0000000 01123456677788
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhC
Q 004389 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (757)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (757)
+..++..+...++ +.++ + ++ ..|.. +++++..++..+| +.+++.+.+.+.+.+.
T Consensus 323 ~p~l~~~l~~~d~-d~~~-~---~~-~~r~~-----------------a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~-- 376 (462)
T 1ibr_B 323 VPILTQTLTKQDE-NDDD-D---DW-NPCKA-----------------AGVCLMLLATCCE-DDIVPHVLPFIKEHIK-- 376 (462)
T ss_dssp HHHHHHHTTCCCS-SCCT-T---CC-SHHHH-----------------HHHHHHHHHHHTT-TTHHHHHHHHHHHHTT--
T ss_pred cHHHHHHHHhccc-cccc-c---cc-hHHHH-----------------HHHHHHHHHHhcc-HHHHHHHHHHHHHHhc--
Confidence 8888776654322 1111 1 11 23444 8889999999898 6788878877776642
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHH
Q 004389 461 GNKHNEWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVL 537 (757)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l 537 (757)
+.+|+.+++++++++++++++..+ -.+.++.+++.+. .+ ..++.||.++++++|+|++++...-....++++++
T Consensus 377 ---~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll 453 (462)
T 1ibr_B 377 ---NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (462)
T ss_dssp ---CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHH
T ss_pred ---CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHH
Confidence 468999999999999999987632 2344555555432 22 24899999999999999999976310013899999
Q ss_pred HHHHhccC
Q 004389 538 SILTSGMS 545 (757)
Q Consensus 538 ~~l~~~l~ 545 (757)
+.++++|+
T Consensus 454 ~~Ll~~L~ 461 (462)
T 1ibr_B 454 QCLIEGLS 461 (462)
T ss_dssp HHHHCC--
T ss_pred HHHHHHhc
Confidence 99988764
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.76 E-value=1.1e-15 Score=190.02 Aligned_cols=568 Identities=12% Similarity=0.113 Sum_probs=347.9
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCC
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVE 73 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~ 73 (757)
..++.+.+..+ .++|++.|.+|...|.+.-+.+ .........|. +.+..+|..|+..|.+.+..
T Consensus 5 ~~~l~~lL~~l-~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~--- 78 (1230)
T 1u6g_C 5 SYHISNLLEKM-TSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE--DKNGEVQNLAVKCLGPLVSK--- 78 (1230)
T ss_dssp CHHHHHHHHHT-TCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHTT---
T ss_pred HhHHHHHHHhc-CCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHh---
Confidence 45688888887 6789999999998887765433 22333445554 46789999999999987763
Q ss_pred CCChhhHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc---------ccCCccchHHHHHhcCCCC--Cchh
Q 004389 74 ELPSEAVRGLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISAE---------DWGGGGIVNWLRDEMNSHP--EFVP 142 (757)
Q Consensus 74 ~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~---------~W~~~~~~~~l~~~~~~~~--~~~~ 142 (757)
++++.+..++..|+..+.. .+..||...+.+++.++....+. .|++ +++.+++.+.+++ ....
T Consensus 79 -~~~~~~~~i~~~Ll~~l~d---~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~--llp~L~~~l~~~~~~~~~~ 152 (1230)
T 1u6g_C 79 -VKEYQVETIVDTLCTNMLS---DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK--ITGRLTSAIAKQEDVSVQL 152 (1230)
T ss_dssp -SCHHHHHHHHHHHHHHTTC---SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH--HHHHHHHHHSCCSCHHHHH
T ss_pred -CCHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH--HHHHHHHHHcCCCchHHHH
Confidence 4666777777777776543 45578999999999998776654 4888 8999998886322 2345
Q ss_pred HHHHHhhhchhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccc
Q 004389 143 GFLELLTVLPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASH 220 (757)
Q Consensus 143 ~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~ 220 (757)
..+.+|..+++..... +..+.+.+++.+...+.++ .++..+++|+...+.. .+... ..
T Consensus 153 ~al~~l~~~~~~~~~~---------------l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~---~~~~~--~~ 212 (1230)
T 1u6g_C 153 EALDIMADMLSRQGGL---------------LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS---CGNIV--FV 212 (1230)
T ss_dssp HHHHHHHHHHHHTCSS---------------CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT---C------CT
T ss_pred HHHHHHHHHHHHhHhH---------------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh---cCHHH--HH
Confidence 6677776666544321 1123355555555555443 3555566666555442 11100 00
Q ss_pred hhHHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHh
Q 004389 221 PLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMG 300 (757)
Q Consensus 221 ~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~ 300 (757)
. ++..+++.+ .... +.......+..+..++
T Consensus 213 ~------------------------------------------~l~~l~~~L-------~~~~-~~~~r~~a~~~l~~l~ 242 (1230)
T 1u6g_C 213 D------------------------------------------LIEHLLSEL-------SKND-SMSTTRTYIQCIAAIS 242 (1230)
T ss_dssp T------------------------------------------HHHHHHHHH-------HHTC-SSCSCTTHHHHHHHHH
T ss_pred H------------------------------------------HHHHHHHHh-------ccCC-chhHHHHHHHHHHHHH
Confidence 1 111111110 0000 0001112233333333
Q ss_pred hHHHHHHHcCCchhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHH
Q 004389 301 DSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESL 380 (757)
Q Consensus 301 ~~~~~~i~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 380 (757)
......+. +....+++.++.....++++++..++..|..+.+... ..++|++..+
T Consensus 243 ~~~~~~~~---~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~----------------------~~~~~~l~~l 297 (1230)
T 1u6g_C 243 RQAGHRIG---EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP----------------------KEVYPHVSTI 297 (1230)
T ss_dssp HHSSGGGT---TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT----------------------CCCHHHHHHH
T ss_pred HHhHHHHH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh----------------------HHHHHhHHHH
Confidence 22211121 2234567777777777788888888888877766331 1346888899
Q ss_pred HHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhC
Q 004389 381 VSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACC 460 (757)
Q Consensus 381 l~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~ 460 (757)
+..+++.+.+++++ ..++|+ +. . .+.+ +. .+.+..-. ..+.+.
T Consensus 298 i~~ll~~l~~d~~~-~~~~d~-~~-~-~~~~-------------------~~-------~~~~~~~~-~~~~~~------ 340 (1230)
T 1u6g_C 298 INICLKYLTYDPNY-NYDDED-ED-E-NAMD-------------------AD-------GGDDDDQG-SDDEYS------ 340 (1230)
T ss_dssp HHHHTTCCCCC---------------------------------------------------------------------
T ss_pred HHHHHHHhCCCCCC-CCcccc-cc-c-cccc-------------------cc-------ccccchhh-cccccc------
Confidence 99999999885543 111110 00 0 0000 00 00000000 000000
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhC------------
Q 004389 461 GNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAA------------ 526 (757)
Q Consensus 461 ~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~------------ 526 (757)
......|+-+++++.++..++...+..-.++++.+++.+. .+. .++.+|..++..++.+..-....
T Consensus 341 ~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~ 420 (1230)
T 1u6g_C 341 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ 420 (1230)
T ss_dssp ----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred cccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence 0114679989999999999988544322344444444442 232 37889988888887765533210
Q ss_pred ---C--CCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHH
Q 004389 527 ---S--SDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (757)
Q Consensus 527 ---~--~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l 600 (757)
+ ....+++.+++.+.+.+.++. .++..++.++..++..++..+.+|++.++..+.+.+.... -..+.+...
T Consensus 421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~---~~~~v~~~a 497 (1230)
T 1u6g_C 421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS---SSSNLKIDA 497 (1230)
T ss_dssp CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS---SCHHHHHHH
T ss_pred ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCC---CcchHHHHH
Confidence 0 001367778888877787654 5888999999999999988888999999999999987531 134677888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC-----CcchHHHHH
Q 004389 601 VEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-----PEAVADAIQ 675 (757)
Q Consensus 601 ~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~~~~~ 675 (757)
+..++.++...+++...+++..++..++. .++.. ..+.....+..++.+++.++. +..+.++.+
T Consensus 498 ~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~l~d~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~ 566 (1230)
T 1u6g_C 498 LSCLYVILCNHSPQVFHPHVQALVPPVVA----CVGDP-------FYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK 566 (1230)
T ss_dssp HHHHHHHHHSSCGGGGHHHHTTTHHHHHH----HHTCS-------SHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHhHHHHHHHHHHH----HHccc-------chHHHHHHHHHHHHHHHHhcCcccccccchHHHHH
Confidence 88888888888777677777666655544 33321 122223466777777766653 346778899
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Q 004389 676 RLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 676 ~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
.++|.+...+.....+.++++.+..+++.++...|+.+.+++|.+++.+.....
T Consensus 567 ~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~ 620 (1230)
T 1u6g_C 567 DLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLK 620 (1230)
T ss_dssp HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhc
Confidence 999998888865556789999999999999999999999999999998877654
No 14
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.59 E-value=3.6e-11 Score=143.83 Aligned_cols=377 Identities=7% Similarity=-0.021 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHH
Q 004389 289 VKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSR 368 (757)
Q Consensus 289 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (757)
.+..++.+..++..... ..+..+++.+.....++++.+...++..+..+.+..
T Consensus 348 r~~a~~~L~~l~~~~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~--------------------- 400 (861)
T 2bpt_A 348 SMSAGACLQLFAQNCGN------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGP--------------------- 400 (861)
T ss_dssp HHHHHHHHHHHHHHHGG------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS---------------------
T ss_pred HHHHHHHHHHHHHHccH------hHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCC---------------------
Confidence 34445555555443321 123455666666666777777777666544333110
Q ss_pred HHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcCh----hH
Q 004389 369 RLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG----DA 444 (757)
Q Consensus 369 ~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~----~~ 444 (757)
....+.+++..++..++..+.-|. ...|.. +..++..++..+++ ..
T Consensus 401 ~~~~~~~~l~~il~~l~~~l~d~~-------------~~vr~~-----------------a~~~l~~l~~~~~~~~~~~~ 450 (861)
T 2bpt_A 401 DKVQRTYYVHQALPSILNLMNDQS-------------LQVKET-----------------TAWCIGRIADSVAESIDPQQ 450 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHGGGCSC-------------HHHHHH-----------------HHHHHHHHHHHHGGGSCTTT
T ss_pred CHHHHHHHHHHHHHHHHHHcCCCc-------------HHHHHH-----------------HHHHHHHHHHHhhhhcCCHH
Confidence 012345677777777776553221 112333 44444444444332 23
Q ss_pred HHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccC----ccccccHHHHHhhc----CCCCChHHHHHHHHHHH
Q 004389 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS----VVEAEVMPQVMALL----PKLPQQPQLLQTVCLTI 516 (757)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~----~~~~~~l~~l~~~l----~~l~~~~~l~~t~~~~i 516 (757)
.+..+...+...+. + +++-+.+++++++.+++.+. ..-.++++.+++.+ .....++.+|..++.++
T Consensus 451 ~~~~~l~~l~~~l~-----~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al 524 (861)
T 2bpt_A 451 HLPGVVQACLIGLQ-----D-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL 524 (861)
T ss_dssp THHHHHHHHHHHHT-----S-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-----c-ChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence 45555555554431 2 27778899999999988765 22235666666544 22233578999999999
Q ss_pred HhhHHHHhhCCCCchhHHHHHHHHHhccCC----------------ChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Q 004389 517 GAYSKWFDAASSDPSILASVLSILTSGMST----------------SEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVY 580 (757)
Q Consensus 517 g~~~~~l~~~~~~~~~l~~~l~~l~~~l~~----------------~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~ 580 (757)
|.+....... ...+++.+++.+++.+.. ...++..+..++..+++.++..+.|+++.++..+
T Consensus 525 ~~l~~~~~~~--~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l 602 (861)
T 2bpt_A 525 TTMVEYATDT--VAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLF 602 (861)
T ss_dssp HHHHHHCCGG--GHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHH
T ss_pred HHHHHHcchh--hHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9988755432 112455555544443321 1137789999999999999988999999999999
Q ss_pred HHHhhCcCCCCCCh-hhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHH
Q 004389 581 RTAVNGEGSLKVSA-EDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAY 659 (757)
Q Consensus 581 ~~l~~~~~~~~l~~-~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 659 (757)
.++++..+ . ..+...+.+++.++...+ +...+++..++..++..+ +.. .......+++.++.
T Consensus 603 ~~~l~~~~-----~~~v~~~~~~~l~~l~~~~~-~~~~~~l~~i~~~l~~~l----~~~-------~~~vr~~a~~~l~~ 665 (861)
T 2bpt_A 603 FRLLEKKD-----SAFIEDDVFYAISALAASLG-KGFEKYLETFSPYLLKAL----NQV-------DSPVSITAVGFIAD 665 (861)
T ss_dssp HHHHHSTT-----GGGTHHHHHHHHHHHHHHHG-GGGHHHHHHHHHHHHHHH----HCT-------TSHHHHHHHHHHHH
T ss_pred HHHHccCC-----CCcHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHh----ccc-------cHHHHHHHHHHHHH
Confidence 99887531 2 567888889998887764 345566666665555444 321 12234456777887
Q ss_pred HhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC-------
Q 004389 660 IFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ------- 732 (757)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~------- 732 (757)
+.+.++ +.+.+++..++|.+...+..-..+.++++.++.+++.++..+|+.+.||++.+++.+.......+
T Consensus 666 l~~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~ 743 (861)
T 2bpt_A 666 ISNSLE--EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEA 743 (861)
T ss_dssp HHHHTG--GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHH
T ss_pred HHHHhc--hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHH
Confidence 877775 46778889999998888875323578999999999999999999999999999999988776432
Q ss_pred -------CcchHhhHHHHHHHhCC
Q 004389 733 -------QPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 733 -------~~~~l~~~~~~i~~f~~ 749 (757)
...++.+.+.++...|+
T Consensus 744 ~~~~~~vr~~~l~~~~~i~~~l~~ 767 (861)
T 2bpt_A 744 LDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 13567777777777663
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.53 E-value=2.6e-11 Score=144.68 Aligned_cols=466 Identities=12% Similarity=0.059 Sum_probs=281.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCc--chHHHHHHHHHHHhhhhccCC-CCCCCCchhHHHHHH
Q 004389 193 ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--ILSEASVNVISELIHYSAAGS-SGGATVNMPLIQVIV 269 (757)
Q Consensus 193 ~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~--~~~~~a~~~l~~ii~~~~~~~-~~~~~~~~~~~~~l~ 269 (757)
.++..+..++..-.... .+ +. ...+++.+++.+.++ ..++.++.++..++....... +... ...+..++
T Consensus 105 ~vr~~~a~~i~~ia~~~--~~-~~--wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~---~~~~~~il 176 (852)
T 4fdd_A 105 LIRATVGILITTIASKG--EL-QN--WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVL---DRPLNIMI 176 (852)
T ss_dssp HHHHHHHHHHHHHHHHT--TT-TT--CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSS---SSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--Cc-cc--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhh---cchHHHHH
Confidence 46666666666544431 11 11 346788888887754 568899999999986543210 0000 01134445
Q ss_pred HHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhc
Q 004389 270 PQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTK 349 (757)
Q Consensus 270 ~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~ 349 (757)
|.+++.. .+.+.+.....++.+..+.......+. +....+++.++.....++.++...++..+..+.+...
T Consensus 177 ~~l~~~l-----~~~~~~vR~~A~~aL~~~~~~~~~~~~---~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~- 247 (852)
T 4fdd_A 177 PKFLQFF-----KHSSPKIRSHAVACVNQFIISRTQALM---LHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRM- 247 (852)
T ss_dssp HHHTTTT-----TCSSHHHHHHHHHHHHTTTTTTCHHHH---TSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHh-----cCCCHHHHHHHHHHHHHHHhcccHHHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCH-
Confidence 5443321 123344433444444443321111111 1234567777777777888888888887766665321
Q ss_pred ccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhh
Q 004389 350 RDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAV 429 (757)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~ 429 (757)
..+.|++..++..++.-+.-+ + + +.|.. +
T Consensus 248 ---------------------~~~~~~l~~l~~~l~~~~~~~------~-~------~vr~~-----------------a 276 (852)
T 4fdd_A 248 ---------------------DRLLPHMHNIVEYMLQRTQDQ------D-E------NVALE-----------------A 276 (852)
T ss_dssp ---------------------HHHGGGHHHHHHHHHHHHTCS------S-H------HHHHH-----------------H
T ss_pred ---------------------HHHHHHHHHHHHHHHHHccCC------c-H------HHHHH-----------------H
Confidence 234455556666655443311 1 1 12333 4
Q ss_pred hhHHHhhhhh------cCh--hHHHHHHHHHHHH-----hHhhCC---C-CC----CCcchhhHHHHHHHHhhcccCccc
Q 004389 430 ADVLIDAASV------LGG--DATLKILYIKFVE-----GVACCG---N-KH----NEWRPAEAALFCIRAISTYVSVVE 488 (757)
Q Consensus 430 ~d~l~~~~~~------l~~--~~~l~~l~~~l~~-----~~~~~~---~-~~----~~w~~~Ea~l~~l~~ia~~~~~~~ 488 (757)
.+++..++.. +++ ..+++.+.+.+.. ...... + .. .+|.-+.++.-+++.++....
T Consensus 277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--- 353 (852)
T 4fdd_A 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--- 353 (852)
T ss_dssp HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc---
Confidence 4444443321 111 1223333222200 000000 0 01 579989999999999998764
Q ss_pred cccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHh
Q 004389 489 AEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC 565 (757)
Q Consensus 489 ~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~ 565 (757)
+..++.+++.+.+ + ..++.+|.+++.++|.+++.....-. .+++.+++.+++.+.+++ .|+..|+.++.++++.+
T Consensus 354 ~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~--~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 354 DELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMI--PYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHG--GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHH--HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 2455666665432 1 24799999999999999875543111 378999999999998865 59999999999999987
Q ss_pred hh-hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccc
Q 004389 566 RK-KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 644 (757)
Q Consensus 566 ~~-~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 644 (757)
.. ...+++..++..+.+.+... +...+.....+++.++...+.+ ..+++ .+++..+.++++...
T Consensus 432 ~~~~~~~~~~~ll~~L~~~L~d~-----~~~vr~~a~~aL~~l~~~~~~~-l~~~l----~~ll~~L~~~l~~~~----- 496 (852)
T 4fdd_A 432 VSQPPDTYLKPLMTELLKRILDS-----NKRVQEAACSAFATLEEEACTE-LVPYL----AYILDTLVFAFSKYQ----- 496 (852)
T ss_dssp HHSCTTTTHHHHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHHHGGG-GGGGH----HHHHHHHHHHHHHCC-----
T ss_pred ccchHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHhhHh-hHhHH----HHHHHHHHHHHHHhC-----
Confidence 65 35689999999888877532 4678899999999988775533 33444 444444555554322
Q ss_pred cCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Q 004389 645 KHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCRACKYAVRTSKRFMGITIGAILEE 723 (757)
Q Consensus 645 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~ 723 (757)
.+.....++.++.++..++..-.-.++++.++|.+...+..... ++++ ..++.+++.++..+|..+.|+++++++.
T Consensus 497 --~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~ 573 (852)
T 4fdd_A 497 --HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQR 573 (852)
T ss_dssp --HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 12333466777777776653222246788999998877766543 4555 5899999999999999999999998886
Q ss_pred HHHHHhhc----------C----------CcchHhhHHHHHHHhCC
Q 004389 724 IQGLYQQH----------Q----------QPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 724 l~~~~~~~----------~----------~~~~l~~~~~~i~~f~~ 749 (757)
++..+... + ..+.+++++.++..+|.
T Consensus 574 ~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~ 619 (852)
T 4fdd_A 574 CVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGG 619 (852)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhH
Confidence 65554321 1 13456889999998884
No 16
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.45 E-value=4.3e-10 Score=134.68 Aligned_cols=266 Identities=13% Similarity=0.168 Sum_probs=184.8
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~ 541 (757)
..+|..+.++..+++.+++.+.. ..++.+++.+. .+ ..++.+|.+++.++|.+++..... ....+++.+++.++
T Consensus 339 ~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~-~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 339 DDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS-QLKPLVIQAMPTLI 414 (876)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHCcH---hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHH
Confidence 35799999999999999988752 34666666543 22 247999999999999998644210 00126788888888
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHHhhhhh--cCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC------
Q 004389 542 SGMSTSE-DTAAAAALAFRHICDDCRKKL--CGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP------ 612 (757)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~~~~~l--~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~------ 612 (757)
+.+.++. .|+..|+.++.++++.+...+ .++++.++..+...+.. +...+.....+++.++...+
T Consensus 415 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~------~~~v~~~a~~al~~l~~~~~~~~~~~ 488 (876)
T 1qgr_A 415 ELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA------EPRVASNVCWAFSSLAEAAYEAADVA 488 (876)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS------CHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHHhhhccccc
Confidence 8887764 599999999999999987754 58999999998887753 24567778888888876532
Q ss_pred -------hHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHH
Q 004389 613 -------QVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIF 685 (757)
Q Consensus 613 -------~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l 685 (757)
.+...+++ .+++..+.+.+..... +........++.++.+++.++. ...+++..++|.+...+
T Consensus 489 ~~~~~~~~~~l~~~~----~~il~~L~~~l~~~~~----~~~~~r~~~~~~l~~l~~~~~~--~~~~~~~~l~~~l~~~l 558 (876)
T 1qgr_A 489 DDQEEPATYCLSSSF----ELIVQKLLETTDRPDG----HQNNLRSSAYESLMEIVKNSAK--DCYPAVQKTTLVIMERL 558 (876)
T ss_dssp TSCCCCCCCSSTTTH----HHHHHHHHHHTTSCSS----CSTTHHHHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHhH----HHHHHHHHHHHhCcCc----chhhHHHHHHHHHHHHHHHCch--hhHHHHHHHHHHHHHHH
Confidence 11122333 3444445555543211 1112334578888888887753 46678888888887777
Q ss_pred Hhc--------C-CC----HHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcC-----CcchHhhHHHHHHH
Q 004389 686 DIR--------A-WD----MRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQ-----QPCFLYLSSEVIKV 746 (757)
Q Consensus 686 ~~~--------~-~~----~~v~e~~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~~~~~-----~~~~l~~~~~~i~~ 746 (757)
... . .+ +++++.++.++..+++.+| +.+.|+++.+++.+...++... ....+.+++.++..
T Consensus 559 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~ 638 (876)
T 1qgr_A 559 QQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV 638 (876)
T ss_dssp HHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence 642 1 12 4567889999999999999 9999999999999988876542 12356666777666
Q ss_pred hCC
Q 004389 747 VFP 749 (757)
Q Consensus 747 f~~ 749 (757)
.|.
T Consensus 639 ~~~ 641 (876)
T 1qgr_A 639 LGG 641 (876)
T ss_dssp HGG
T ss_pred HHh
Confidence 553
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.41 E-value=1.6e-09 Score=123.46 Aligned_cols=563 Identities=10% Similarity=0.058 Sum_probs=324.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhc--C-hhHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhh
Q 004389 4 QNTVKEALNALYHHPDDAVRMQADRWLQDFQH--T-IDAWQVADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (757)
Q Consensus 4 ~~~v~~al~~ly~~~d~~~r~~A~~~L~~~q~--s-~~aw~~~~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~ 79 (757)
...+...+..+ .++|+..|..|-+.|..+-. . ...|.-....|.. -+.+.++|..++..|...... +...+
T Consensus 9 ~~~i~~l~~~l-~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~d~~~~vr~~~~~~L~~~~~~----~~~~~ 83 (588)
T 1b3u_A 9 LYPIAVLIDEL-RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGTFTTL----VGGPE 83 (588)
T ss_dssp SHHHHHHHHHT-TCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHTTCSGG----GTSGG
T ss_pred cCcHHHHHHHh-hcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc----cCcHH
Confidence 45677788888 67899999999888876543 2 3345544334432 234568999999888743322 11111
Q ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhcc
Q 004389 80 VRGLQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVF 156 (757)
Q Consensus 80 ~~~lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~-~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~~ 156 (757)
....++..+.... .....||...+.++..++...++ ..|+. +++.+.+..++.. ........++..+.+.+.
T Consensus 84 ---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~--l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 84 ---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAH--FVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp ---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHT--HHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred ---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 1223444443332 24578999999999999865543 12443 5555544444321 122344445555443321
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCc-
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE- 233 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~- 233 (757)
. ...+.+++++...+.++ .++..+.+++..+... ++... ....+++.+...+.++
T Consensus 159 -------~-----------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~---~~~~~-~~~~l~~~l~~~~~d~~ 216 (588)
T 1b3u_A 159 -------S-----------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKV---LELDN-VKSEIIPMFSNLASDEQ 216 (588)
T ss_dssp -------H-----------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHT---SCHHH-HHHTHHHHHHHHHTCSC
T ss_pred -------H-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---hcHHh-HHHHHHHHHHHHhcCCc
Confidence 1 11234555555555543 6889999999988774 33211 1245777777777664
Q ss_pred -chHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCc
Q 004389 234 -ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSD 312 (757)
Q Consensus 234 -~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~ 312 (757)
.++..|++++..+...... ......++|.+..+. .+.+....+..++.+..++.....-.
T Consensus 217 ~~vr~~a~~~l~~l~~~~~~---------~~~~~~~~~~l~~~~-----~d~~~~vR~~a~~~l~~l~~~~~~~~----- 277 (588)
T 1b3u_A 217 DSVRLLAVEACVNIAQLLPQ---------EDLEALVMPTLRQAA-----EDKSWRVRYMVADKFTELQKAVGPEI----- 277 (588)
T ss_dssp HHHHTTHHHHHHHHHHHSCH---------HHHHHHTHHHHHHHH-----TCSSHHHHHHHHHTHHHHHHHHCHHH-----
T ss_pred HHHHHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHhCccc-----
Confidence 5678899999888764321 112222333322221 23334444556666666554321100
Q ss_pred hhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCC
Q 004389 313 ESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQ 392 (757)
Q Consensus 313 ~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~ 392 (757)
....+++.++.+...++.++...+...+..+.+.+.. + .. ..+++..++..+...+ .
T Consensus 278 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~--------~~---~~~~~~~l~p~l~~~l---~ 334 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA---------D--------CR---ENVIMSQILPCIKELV---S 334 (588)
T ss_dssp HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT---------T--------TH---HHHHHHTHHHHHHHHH---T
T ss_pred chhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh---------h--------hh---hhHHHHHHHHHHHHHh---c
Confidence 0123566666777778888888888877777654321 0 00 0012222222222211 1
Q ss_pred CCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhH
Q 004389 393 DYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEA 472 (757)
Q Consensus 393 d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea 472 (757)
| . + ...|.. +...+..++..+|.+...+.+...+...+. +.++.-+++
T Consensus 335 d-~----~-----~~vR~~-----------------a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~-----d~~~~Vr~~ 382 (588)
T 1b3u_A 335 D-A----N-----QHVKSA-----------------LASVIMGLSPILGKDNTIEHLLPLFLAQLK-----DECPEVRLN 382 (588)
T ss_dssp C-S----C-----HHHHHH-----------------HHTTGGGGHHHHCHHHHHHHTHHHHHHHHT-----CSCHHHHHH
T ss_pred C-C----C-----HHHHHH-----------------HHHHHHHHHHHhhHhHHHHHHHHHHHHHhC-----CCchHHHHH
Confidence 1 0 0 123444 666777777777765445555555555441 345666778
Q ss_pred HHHHHHHhhcccCccc--cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-H
Q 004389 473 ALFCIRAISTYVSVVE--AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-D 549 (757)
Q Consensus 473 ~l~~l~~ia~~~~~~~--~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~ 549 (757)
++.+++.+.+.+..+. ...+|.+...+. ..+..+|.+++.+++.++..+.... +.+.+++.+.+.+.++. .
T Consensus 383 a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~ 456 (588)
T 1b3u_A 383 IISNLDCVNEVIGIRQLSQSLLPAIVELAE--DAKWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYA 456 (588)
T ss_dssp HHTTCHHHHHHSCHHHHHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHcCHHH----HHHHHHHHHHHHhcCCcHH
Confidence 8888888877654321 234455554432 2478999999999999998775431 34667788888887764 5
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHH
Q 004389 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVT 629 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~ 629 (757)
|+..|+.++..++...+... +.+.++..+..+... -+...|...+++++.+...++.+. +...++ .
T Consensus 457 Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~-----~~~~~R~~a~~~l~~l~~~~~~~~---~~~~~~----~ 522 (588)
T 1b3u_A 457 IREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGD-----PNYLHRMTTLFCINVLSEVCGQDI---TTKHML----P 522 (588)
T ss_dssp HHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTC-----SCHHHHHHHHHHHHHHHHHHHHHH---HHHHTH----H
T ss_pred HHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhcCHHH---HHHHHH----H
Confidence 99999999999998876542 234555555554432 245778889999998877754322 233333 3
Q ss_pred HHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 004389 630 PLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYA 705 (757)
Q Consensus 630 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~ 705 (757)
.+.+.+... .+.-....+..++.+++.++. .. ..+.+.|.+..+++ ..|.+|++.++.++..+
T Consensus 523 ~l~~~l~d~-------~~~Vr~~a~~~l~~l~~~~~~--~~--~~~~~~p~l~~l~~--d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 523 TVLRMAGDP-------VANVRFNVAKSLQKIGPILDN--ST--LQSEVKPILEKLTQ--DQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHGGGCS-------CHHHHHHHHHHHHHHGGGSCH--HH--HHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHT
T ss_pred HHHhhCCCC-------CchHHHHHHHHHHHHHHHhch--hh--hHHHHHHHHHHHcC--CCchhHHHHHHHHHHHh
Confidence 333333321 122344567788888776642 11 22577888877543 36889999999988753
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.27 E-value=1.4e-09 Score=123.81 Aligned_cols=516 Identities=10% Similarity=0.057 Sum_probs=293.3
Q ss_pred CChHHHHHHHHHHHHHHhhcc-ccccCCccchHHHHHhcCCCCCchhHHHHHhhhchhhcccccccCChHHHHHHHHHHH
Q 004389 97 GPPKVRTQISIAVAALAVHIS-AEDWGGGGIVNWLRDEMNSHPEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEKELT 175 (757)
Q Consensus 97 ~~~~v~~kL~~~la~l~~~~~-~~~W~~~~~~~~l~~~~~~~~~~~~~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~~l~ 175 (757)
+...+|..-+..++.++.... ...|++ +++.+.+....++.........|..+.+.+...
T Consensus 22 ~~~~~R~~A~~~l~~i~~~~~~~~~~~~--l~~~L~~~~d~~~~vr~~~~~~L~~~~~~~~~~----------------- 82 (588)
T 1b3u_A 22 EDVQLRLNSIKKLSTIALALGVERTRSE--LLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGP----------------- 82 (588)
T ss_dssp SCHHHHHHHHHTHHHHHHHSCHHHHHHT--HHHHHHHTCCCCHHHHHHHHHHHTTCSGGGTSG-----------------
T ss_pred ccHHHHHHHHHhHHHHHHHhCHHHHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHHhccCcH-----------------
Confidence 567788888888888876543 245777 888887655322222344555555554433210
Q ss_pred HhHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCC--cchHHHHHHHHHHHhhhhc
Q 004389 176 SQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIHYSA 251 (757)
Q Consensus 176 ~~~~~vl~~l~~~l~~--~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~~~~ 251 (757)
.+.+.++..+...+.+ +.++..+.+++..-... .+...+ ...+++.+.....+ +..+..|+.++..+.....
T Consensus 83 ~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~---~~~~~~-~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~ 158 (588)
T 1b3u_A 83 EYVHCLLPPLESLATVEETVVRDKAVESLRAISHE---HSPSDL-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS 158 (588)
T ss_dssp GGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTT---SCHHHH-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH---CCHHHH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC
Confidence 1334455565555544 35888888888876663 332211 22345555444443 3567888888877765321
Q ss_pred cCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhcccccCccc
Q 004389 252 AGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYD 331 (757)
Q Consensus 252 ~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~~~~~~~ 331 (757)
......++|.+..+ + .+.+.+.....++.+..+++....- .....++..++.+...++..
T Consensus 159 ----------~~~~~~l~~~l~~l---~--~d~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~d~~~~ 218 (588)
T 1b3u_A 159 ----------SAVKAELRQYFRNL---C--SDDTPMVRRAAASKLGEFAKVLELD-----NVKSEIIPMFSNLASDEQDS 218 (588)
T ss_dssp ----------HHHHHHHHHHHHHH---H--TCSCHHHHHHHHHHHHHHHHTSCHH-----HHHHTHHHHHHHHHTCSCHH
T ss_pred ----------HHHHHHHHHHHHHH---h--CCCCHHHHHHHHHHHHHHHHHhcHH-----hHHHHHHHHHHHHhcCCcHH
Confidence 11223334433222 1 2445555556666666654321110 01234566666777788888
Q ss_pred hhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHHhhhc
Q 004389 332 IASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKHTRYD 411 (757)
Q Consensus 332 v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~~R~~ 411 (757)
++..++..+..+.+.... +...+.+.|.+.+++ .| .. ...|..
T Consensus 219 vr~~a~~~l~~l~~~~~~-----------------~~~~~~~~~~l~~~~----------~d-~~---------~~vR~~ 261 (588)
T 1b3u_A 219 VRLLAVEACVNIAQLLPQ-----------------EDLEALVMPTLRQAA----------ED-KS---------WRVRYM 261 (588)
T ss_dssp HHTTHHHHHHHHHHHSCH-----------------HHHHHHTHHHHHHHH----------TC-SS---------HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHHc----------cC-CC---------HHHHHH
Confidence 988999888777664321 011223334333322 11 11 124544
Q ss_pred ccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcccc--
Q 004389 412 LACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEA-- 489 (757)
Q Consensus 412 ~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~-- 489 (757)
+...+..++...|++.....+.+.+.+.+. +.+|.-++++..+++.+++.+.....
T Consensus 262 -----------------a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----d~~~~vr~~a~~~l~~~~~~~~~~~~~~ 319 (588)
T 1b3u_A 262 -----------------VADKFTELQKAVGPEITKTDLVPAFQNLMK-----DCEAEVRAAASHKVKEFCENLSADCREN 319 (588)
T ss_dssp -----------------HHHTHHHHHHHHCHHHHHHTHHHHHHHHHT-----CSSHHHHHHHHHHHHHHHHTSCTTTHHH
T ss_pred -----------------HHHHHHHHHHHhCcccchhHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHHHHhChhhhhh
Confidence 667777776667655444445555554431 46788889999999999988765421
Q ss_pred ccHHHHHhhcCCC--CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh
Q 004389 490 EVMPQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR 566 (757)
Q Consensus 490 ~~l~~l~~~l~~l--~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~ 566 (757)
..++.+++.+..+ ..++.+|.+++..++.+++++.... ..+.+++.+...+.++. .|+..|..++..+++..+
T Consensus 320 ~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 395 (588)
T 1b3u_A 320 VIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDN----TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395 (588)
T ss_dssp HHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHH----HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhH----HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcC
Confidence 2344444433211 2378999999999999999885431 34566666666676653 599999999999988654
Q ss_pred hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccC
Q 004389 567 KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKH 646 (757)
Q Consensus 567 ~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~ 646 (757)
... +.+.++..+..++.. -+...|..++++++.+...++.+...+ .++..+.+.+... .
T Consensus 396 ~~~--~~~~~lp~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~~~~~~~~-------~l~~~l~~~l~d~-------~ 454 (588)
T 1b3u_A 396 IRQ--LSQSLLPAIVELAED-----AKWRVRLAIIEYMPLLAGQLGVEFFDE-------KLNSLCMAWLVDH-------V 454 (588)
T ss_dssp HHH--HHHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHHHCGGGCCH-------HHHHHHHHGGGCS-------S
T ss_pred HHH--HHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHcCHHHHHH-------HHHHHHHHHhcCC-------c
Confidence 321 223444444444432 235678888999998887766542211 1222222333211 1
Q ss_pred cchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Q 004389 647 PRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQG 726 (757)
Q Consensus 647 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~ 726 (757)
..-...++..++.+.+.++. + .....++|.+..++. ..+..++..++.+++.+...+|... +++.+++.+..
T Consensus 455 ~~Vr~~a~~~l~~l~~~~~~-~---~~~~~llp~l~~~~~--~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~ 526 (588)
T 1b3u_A 455 YAIREAATSNLKKLVEKFGK-E---WAHATIIPKVLAMSG--DPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLR 526 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCH-H---HHHHHTHHHHHHTTT--CSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc-h---hHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHh
Confidence 11233456667766665542 1 234667777655432 2457888888888888888877643 55666666665
Q ss_pred HHhhcCCc----chHhhHHHHHHHhC
Q 004389 727 LYQQHQQP----CFLYLSSEVIKVVF 748 (757)
Q Consensus 727 ~~~~~~~~----~~l~~~~~~i~~f~ 748 (757)
.+.. +.+ ..+++++.+...+|
T Consensus 527 ~l~d-~~~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 527 MAGD-PVANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp GGGC-SCHHHHHHHHHHHHHHGGGSC
T ss_pred hCCC-CCchHHHHHHHHHHHHHHHhc
Confidence 5432 222 24555555555444
No 19
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.17 E-value=4.5e-08 Score=121.47 Aligned_cols=265 Identities=10% Similarity=0.033 Sum_probs=179.1
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCC-CC--------------------------------------Ch
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LP--------------------------------------QQ 505 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~--------------------------------------~~ 505 (757)
.+..-+++++.+++.+++.+...-.++++.+++.+.+ +. ..
T Consensus 267 ~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 346 (1230)
T 1u6g_C 267 DDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMS 346 (1230)
T ss_dssp CCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CT
T ss_pred CCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccC
Confidence 3455678999999999988766544566666665321 10 01
Q ss_pred HHHHHHHHHHHHhhHHHHhhCCC-CchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHh------------------
Q 004389 506 PQLLQTVCLTIGAYSKWFDAASS-DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDC------------------ 565 (757)
Q Consensus 506 ~~l~~t~~~~ig~~~~~l~~~~~-~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~------------------ 565 (757)
..+|.+++.+++.++.- .|+ ...+++.+++.+...+.+++ .|+..|..++..++...
T Consensus 347 ~~vR~~A~~~l~~l~~~---~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (1230)
T 1u6g_C 347 WKVRRAAAKCLDAVVST---RHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGET 423 (1230)
T ss_dssp THHHHHHHHHHHHHHTT---CCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCC
T ss_pred HHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccc
Confidence 35799999999988762 232 11366667777777775543 49999999999998753
Q ss_pred -hhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccc
Q 004389 566 -RKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQK 644 (757)
Q Consensus 566 -~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~ 644 (757)
...+.++++.++..+.+.+... +...|...+.+++.++...+. ...+++ ..++..+.+.+.....
T Consensus 424 ~~~~~~~~l~~ll~~l~~~l~~~-----~~~vr~~~~~~L~~l~~~~~~-~l~~~l----~~ll~~l~~~L~d~~~---- 489 (1230)
T 1u6g_C 424 PLTMLQSQVPNIVKALHKQMKEK-----SVKTRQCCFNMLTELVNVLPG-ALTQHI----PVLVPGIIFSLNDKSS---- 489 (1230)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHHHSTT-TTGGGH----HHHHHHHHHHTTCSSS----
T ss_pred hHHHHHHHhhHHHHHHHHHhccC-----CHHHHHHHHHHHHHHHHHchh-hhHHHH----HHHHHHHHHHHcCCCC----
Confidence 3345567777888777776542 356778889999988887642 222333 3444444455543221
Q ss_pred cCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-------hhhhhH
Q 004389 645 KHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKR-------FMGITI 717 (757)
Q Consensus 645 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~-------~~~p~l 717 (757)
........+..++.++...+ ++.+.++++.++|.+...++. .+..|+..++.+++.+++.+|+ .+.||+
T Consensus 490 -~~~v~~~a~~~l~~~~~~~~-~~~~~~~l~~llp~L~~~l~d--~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~ 565 (1230)
T 1u6g_C 490 -SSNLKIDALSCLYVILCNHS-PQVFHPHVQALVPPVVACVGD--PFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 565 (1230)
T ss_dssp -CHHHHHHHHHHHHHHHHSSC-GGGGHHHHTTTHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH
T ss_pred -cchHHHHHHHHHHHHHHhCC-HHHHHhHHHHHHHHHHHHHcc--cchHHHHHHHHHHHHHHHHhcCcccccccchHHHH
Confidence 11233456677777776554 455778889999988876654 4577888888999999999887 788999
Q ss_pred HHHHHHHHHHHhhc-CC----cchHhhHHHHHHHhCCc
Q 004389 718 GAILEEIQGLYQQH-QQ----PCFLYLSSEVIKVVFPP 750 (757)
Q Consensus 718 ~~~~~~l~~~~~~~-~~----~~~l~~~~~~i~~f~~~ 750 (757)
+.+++.++..+... +. ...+++++.++..+|+.
T Consensus 566 ~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~ 603 (1230)
T 1u6g_C 566 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN 603 (1230)
T ss_dssp HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch
Confidence 99999999888532 22 23578888888887753
No 20
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.59 E-value=3.8e-05 Score=92.45 Aligned_cols=271 Identities=7% Similarity=-0.023 Sum_probs=163.0
Q ss_pred CcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHh---------hCCCCchhHH
Q 004389 466 EWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFD---------AASSDPSILA 534 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~---------~~~~~~~~l~ 534 (757)
.-.-+-+++++++.+++.+.+ +++..+++.+. .+ .+++.|+.+++..+.+|.+... .......+++
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~---~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~ 547 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTK---AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE 547 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCH---HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred CceehHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH
Confidence 344567899999999988742 34444444332 22 2379999999999999876422 0011124889
Q ss_pred HHHHHHHhccCCC----hH--HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHH
Q 004389 535 SVLSILTSGMSTS----ED--TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVI 608 (757)
Q Consensus 535 ~~l~~l~~~l~~~----~~--v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi 608 (757)
.+++.+++.++.. .+ ....+..++.+++...++.+.||++.+++.+.+.+.......-+..-+..++++++.++
T Consensus 548 ~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~ 627 (960)
T 1wa5_C 548 ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAIL 627 (960)
T ss_dssp HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 9999888877653 21 34688899999999999999999999998888777531000112345567999999999
Q ss_pred hcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhh--------------------cCCCc
Q 004389 609 TELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY--------------------VNHPE 668 (757)
Q Consensus 609 ~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------------------~~~~~ 668 (757)
.+.+++....+...++.++ .++++..... ..-..++.++.+.+. ++.+.
T Consensus 628 ~~~~~~~~~~~~~~~~p~~----~~iL~~~~~~-------~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 696 (960)
T 1wa5_C 628 NYTQRQNLPLLVDSMMPTF----LTVFSEDIQE-------FIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKG 696 (960)
T ss_dssp HTSCGGGHHHHHHHHHHHH----HHHHHTTCTT-------THHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTT
T ss_pred hcCCcchHHHHHHHHHHHH----HHHHHhhhHh-------hHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCC
Confidence 9976666655555544333 3333322210 111122222222211 11111
Q ss_pred ch---HHHHHHH----------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHHhhcCCc
Q 004389 669 AV---ADAIQRL----------WPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAILEEIQGLYQQHQQP 734 (757)
Q Consensus 669 ~~---~~~~~~~----------~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~p~l~~~~~~l~~~~~~~~~~ 734 (757)
.+ .+.+..+ ++.+..++++...+...-+.+|.+++.++..+|.+ +.||+|.+++.+....+.....
T Consensus 697 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~ 776 (960)
T 1wa5_C 697 NIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASKAYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTE 776 (960)
T ss_dssp THHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCH
T ss_pred CchhHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcH
Confidence 11 1111111 12222222221111112278899999999999988 9999999999999887665443
Q ss_pred ----chHhhHHHHHHHhCCc
Q 004389 735 ----CFLYLSSEVIKVVFPP 750 (757)
Q Consensus 735 ----~~l~~~~~~i~~f~~~ 750 (757)
+++...+.++..||.+
T Consensus 777 ~~~~~~l~~~~~~~~~~~~~ 796 (960)
T 1wa5_C 777 RYVKKLTVFFGLISNKLGSD 796 (960)
T ss_dssp HHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHHHHHHcCHH
Confidence 3456666666666654
No 21
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.54 E-value=1.2e-06 Score=96.25 Aligned_cols=271 Identities=11% Similarity=0.045 Sum_probs=166.6
Q ss_pred CcchhhHHHHHHHHhhcccCcc-ccccHHHHHhhc----CCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 466 EWRPAEAALFCIRAISTYVSVV-EAEVMPQVMALL----PKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~-~~~~l~~l~~~l----~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
++..+++++.+++.+.+..... ...+++.+++.+ ..-..++.||..++++++.+..++..+.........+++.+
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVV 222 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 7888999999999998876322 234445555543 22112689999999999987665543321101112345555
Q ss_pred HhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCCh-----
Q 004389 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ----- 613 (757)
Q Consensus 541 ~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~-~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~----- 613 (757)
.+.+.++. .++..++.+|..+++.+.+.+.++++ .+++.+...+.. .+.+.+...++.++.+......
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~v~~~a~~~l~~~~~~~~~~~~~~ 297 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKS-----DIDEVALQGIEFWSNVCDEEMDLAIEA 297 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHC-----SSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555443 59999999999999999888889998 888887766653 2456777888877777654100
Q ss_pred -----------HHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 004389 614 -----------VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFK 682 (757)
Q Consensus 614 -----------e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 682 (757)
......+...+..++..+-+.+.......++.....+..+.+.++.+...++ + .++..++|.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~---~~~~~~~~~l~ 372 (462)
T 1ibr_B 298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D---DIVPHVLPFIK 372 (462)
T ss_dssp CCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--T---THHHHHHHHHH
T ss_pred ccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--H---HHHHHHHHHHH
Confidence 0000111222233333333444332211111122223344555555555544 2 24456677776
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHhhcCC----cchHhhHHHHHHHhCC
Q 004389 683 AIFDIRAWDMRTMESLCRACKYAVRTSK-RFMGITIGAILEEIQGLYQQHQQ----PCFLYLSSEVIKVVFP 749 (757)
Q Consensus 683 ~~l~~~~~~~~v~e~~~~~~~~~~~~~~-~~~~p~l~~~~~~l~~~~~~~~~----~~~l~~~~~~i~~f~~ 749 (757)
..+.. .+..++++++.+++.+...++ +.+.++++.+++.+...+.. ++ ....++++.+...+++
T Consensus 373 ~~l~~--~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 373 EHIKN--PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHTTC--SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHhcC--CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhccc
Confidence 66653 578899999999999887555 45678888888888887753 33 3357788888887765
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.53 E-value=5.1e-06 Score=82.59 Aligned_cols=195 Identities=10% Similarity=0.157 Sum_probs=137.7
Q ss_pred CCCcchhhHHHHHHHH-hhcccCccc--cccHHHHHhhcC-CC--CChHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHH
Q 004389 464 HNEWRPAEAALFCIRA-ISTYVSVVE--AEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASV 536 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~-ia~~~~~~~--~~~l~~l~~~l~-~l--~~~~~l~~t~~~~ig~~~~~l~~~~~~~-~~l~~~ 536 (757)
+.+|+++.+++-.++. +.++++.-. ......++..+. .+ ..|+.|+..++.++|.++..+.. +... .|...+
T Consensus 27 s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~~y~~~l 105 (249)
T 2qk1_A 27 SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSKDYVSLV 105 (249)
T ss_dssp CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccHHHHHHH
Confidence 5789999999999999 887654322 222234444432 22 35899999999999999988851 2233 488999
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc-CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCCh-
Q 004389 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC-GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ- 613 (757)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~-p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~- 613 (757)
++.++..+.+.. .|+.+|..|+..+|+.+.+... +|++.+++.+...+++. +...+...+..+++++...+.
T Consensus 106 lp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-----~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-----TPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-----SHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHcCCc
Confidence 999999988754 5999999999999998866332 44999999998888652 467899999999999988763
Q ss_pred -HHHHHHHHHhh-hhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHH
Q 004389 614 -VDAKKALEMLC-LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQR 676 (757)
Q Consensus 614 -e~~~~~l~~l~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 676 (757)
+...++ + .+++..+.+++... ....+..+.++++++.+.++. ..+.+++..
T Consensus 181 ~~~l~~~----l~~~iip~l~~~l~D~-------~~~VR~aA~~~l~~i~~~vG~-~~~~p~l~~ 233 (249)
T 2qk1_A 181 YSTLQRY----LKDEVVPIVIQIVNDT-------QPAIRTIGFESFAILIKIFGM-NTFVKTLEH 233 (249)
T ss_dssp SHHHHHH----HTTTHHHHHHHHHTCS-------SHHHHHHHHHHHHHHHHHHCS-GGGHHHHHH
T ss_pred chhHHHH----HHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhCH-HHHHHHHHH
Confidence 344344 4 55556666666432 223445677888888888774 344444443
No 23
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.42 E-value=1.3e-06 Score=86.96 Aligned_cols=188 Identities=10% Similarity=0.061 Sum_probs=126.9
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC--CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l--~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
+.+|+.+.+++..+..+.++.+......+..+++.+. .+ ..++.|+..++.++|.++.-+... ...+.+.+++.+
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~--~~~~~~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR--FSNYASACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG--GHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHH
Confidence 5789999999999999988754322222345555442 22 248999999999999999877643 224788899999
Q ss_pred HhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHH
Q 004389 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKA 619 (757)
Q Consensus 541 ~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~ 619 (757)
+..+.+++ .|+.+|+.++..++..+ .++.++..+...+..
T Consensus 104 l~~l~d~~~~vr~~a~~aL~~~~~~~------~~~~ll~~l~~~l~~--------------------------------- 144 (242)
T 2qk2_A 104 LEKFKEKKPNVVTALREAIDAIYAST------SLEAQQESIVESLSN--------------------------------- 144 (242)
T ss_dssp HHGGGCCCHHHHHHHHHHHHHHHTTS------CHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHcC---------------------------------
Confidence 99998764 59999999999887621 122222222222211
Q ss_pred HHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCc-chHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 004389 620 LEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPE-AVADAIQRLWPIFKAIFDIRAWDMRTMESL 698 (757)
Q Consensus 620 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~ 698 (757)
. .+......++.++.++...+ |+ ...+.+..++|.+..+++. .+++|++++
T Consensus 145 ------------------~-------~~~vr~~~l~~l~~~l~~~~-~~~~~~~~l~~l~p~l~~~l~D--~~~~VR~~A 196 (242)
T 2qk2_A 145 ------------------K-------NPSVKSETALFIARALTRTQ-PTALNKKLLKLLTTSLVKTLNE--PDPTVRDSS 196 (242)
T ss_dssp ------------------S-------CHHHHHHHHHHHHHHHTTCC-GGGCCHHHHHHHHHHHHHHHTS--SCHHHHHHH
T ss_pred ------------------C-------ChHHHHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 0 11222344555555544432 22 2345667888888888853 578999999
Q ss_pred HHHHHHHHHHhhhh-hhhhHHHH
Q 004389 699 CRACKYAVRTSKRF-MGITIGAI 720 (757)
Q Consensus 699 ~~~~~~~~~~~~~~-~~p~l~~~ 720 (757)
..+++.+.+.+|+. +.|+++.+
T Consensus 197 ~~~l~~l~~~vg~~~~~~~l~~L 219 (242)
T 2qk2_A 197 AEALGTLIKLMGDKAVTPLLADV 219 (242)
T ss_dssp HHHHHHHHHHHCHHHHGGGGTTS
T ss_pred HHHHHHHHHHcCHHHHHHHHHhc
Confidence 99999999999986 88888654
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.35 E-value=0.00024 Score=80.44 Aligned_cols=460 Identities=13% Similarity=0.120 Sum_probs=228.8
Q ss_pred CCCCHHHHHHHHHHHHHHhc-ChhHHHHH-HHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHH
Q 004389 16 HHPDDAVRMQADRWLQDFQH-TIDAWQVA-DNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLK 92 (757)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~-s~~aw~~~-~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~ 92 (757)
.++|...|+-+.-++..+-+ .|+.-..+ ..+..+ .+.++.+|-.|..+|-+.. .++-...+-..+...+.
T Consensus 59 ~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-------~~~~~~~l~~~l~~~L~ 131 (591)
T 2vgl_B 59 QTDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-------VDKITEYLCEPLRKCLK 131 (591)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-------SGGGHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHHHcC
Confidence 45666777776666665544 44443222 222211 1345566766665554321 33333444444444433
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhcccc-cccCChHHHHHH
Q 004389 93 KFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEVFNY-KIAARPERRRQF 170 (757)
Q Consensus 93 ~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~~~~-~~~~~~~~r~~l 170 (757)
...+.||.+-+.++..++... |+.+++.++++.+.+.++... ......+..|..+.++-... ...+.
T Consensus 132 ---d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~------- 200 (591)
T 2vgl_B 132 ---DEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLN------- 200 (591)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCH-------
T ss_pred ---CCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhcc-------
Confidence 256899999999999988644 455653226777777776422 23345566666665542211 11110
Q ss_pred HHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCC--cchHHHHHHHHHHHhh
Q 004389 171 EKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EILSEASVNVISELIH 248 (757)
Q Consensus 171 ~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~--~~~~~~a~~~l~~ii~ 248 (757)
....+.++..+... ++-.+..+++++..+. |.+.-....+++.+...+++ +.+...|+.++..+..
T Consensus 201 ----~~~~~~Ll~~l~~~--~~~~q~~il~~l~~l~------~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~ 268 (591)
T 2vgl_B 201 ----PQNINKLLTALNEC--TEWGQIFILDCLSNYN------PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLE 268 (591)
T ss_dssp ----HHHHHHHHHHHHHC--CHHHHHHHHHHHHTSC------CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCC
T ss_pred ----HHHHHHHHHcCCCC--CchHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhh
Confidence 11122222222211 1223445556554322 11111134567777777764 4566777777777653
Q ss_pred hhccCCCCCCCCchh-HHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCCchhHHHHHHHhccccc
Q 004389 249 YSAAGSSGGATVNMP-LIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASH 327 (757)
Q Consensus 249 ~~~~~~~~~~~~~~~-~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~l~~ll~~~~~ 327 (757)
.... .++..+ ....+.+.++. +. ..|.+......+.+..++..+ |+.+...+..+ .+..+
T Consensus 269 ~~~~-----~~~~~~~~~~~~~~~L~~----L~--~~d~~vr~~aL~~l~~i~~~~-------p~~~~~~~~~~-~~~~~ 329 (591)
T 2vgl_B 269 LLPK-----DSDYYNMLLKKLAPPLVT----LL--SGEPEVQYVALRNINLIVQKR-------PEILKQEIKVF-FVKYN 329 (591)
T ss_dssp SCCB-----TTBSHHHHHHHTHHHHHH----HT--TSCHHHHHHHHHHHHHHHHHC-------CSTTTTCTTTT-SCCTT
T ss_pred ccCC-----CHHHHHHHHHHHHHHHHH----Hh--cCCccHHHHHHHHHHHHHHhC-------hHHHHHHHHhh-eeccC
Confidence 2100 001122 11222222111 22 234443323333344433322 22111111111 12223
Q ss_pred CccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCCCCCCCCChhhhHHHHH
Q 004389 328 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYPQDYQDLSLEDLKEFKH 407 (757)
Q Consensus 328 ~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~~ 407 (757)
.+..|...+++.|+.+.+. . .... ++..+...+. +. | . +
T Consensus 330 d~~~Ir~~al~~L~~l~~~-------------~-----------nv~~----iv~~L~~~l~---~~-----d--~---~ 368 (591)
T 2vgl_B 330 DPIYVKLEKLDIMIRLASQ-------------A-----------NIAQ----VLAELKEYAT---EV-----D--V---D 368 (591)
T ss_dssp SCHHHHHHHHHHHHHTCCS-------------S-----------THHH----HHHHHHHHTT---SS-----C--H---H
T ss_pred ChHHHHHHHHHHHHHHCCh-------------h-----------hHHH----HHHHHHHHHh---cC-----C--H---H
Confidence 3366778888876654310 0 1112 2333332221 10 1 1 3
Q ss_pred hhhcccccCCcchhhhhhhhhhhhHHHhhhhhcCh--hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccC
Q 004389 408 TRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVS 485 (757)
Q Consensus 408 ~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~ 485 (757)
+|.. +...+..++...++ +.++..+.+.+.. ..+|-..|+ +.++..+....+
T Consensus 369 ~r~~-----------------~v~aI~~la~~~~~~~~~~v~~Ll~ll~~--------~~~~v~~e~-i~~l~~ii~~~p 422 (591)
T 2vgl_B 369 FVRK-----------------AVRAIGRCAIKVEQSAERCVSTLLDLIQT--------KVNYVVQEA-IVVIRDIFRKYP 422 (591)
T ss_dssp HHHH-----------------HHHHHHHHHTTCHHHHHHHHHHHHHHHHT--------CCHHHHHHH-HHHHHHHHHHSC
T ss_pred HHHH-----------------HHHHHHHHHHhChhHHHHHHHHHHHHHcc--------cchHHHHHH-HHHHHHHHHHCc
Confidence 5666 55666666554432 3455555554432 244655565 557777766655
Q ss_pred ccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-ChHHHHHHHHHHHHHHHH
Q 004389 486 VVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-SEDTAAAAALAFRHICDD 564 (757)
Q Consensus 486 ~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~Aa~al~~l~~~ 564 (757)
......++.+...+.... +|.++.+++|++|+|++++.. .+.++..+.+.+.+ +..|+..+..|+.++...
T Consensus 423 ~~~~~~v~~L~~~l~~~~-~~~~~~~~~wilGey~~~~~~-------~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 423 NKYESIIATLCENLDSLD-EPDARAAMIWIVGEYAERIDN-------ADELLESFLEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp SSCCTTHHHHHHTTTTCC-SHHHHHHHHHHHHTTCTTCTT-------HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHcccccccC-------HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 443455677766664433 688899999999999987743 34666666655533 445999999999999865
Q ss_pred hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHH
Q 004389 565 CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSM 606 (757)
Q Consensus 565 ~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~ 606 (757)
+.... ...++.+.+.... + ..+.+.|.+.++..+.
T Consensus 495 ~p~~~----~~~i~~ll~~~~~-d--~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 495 KPSET----QELVQQVLSLATQ-D--SDNPDLRDRGYIYWRL 529 (591)
T ss_dssp CCSTT----HHHHHHHHHHHHT-T--CCCHHHHHHHHHHHTT
T ss_pred CchHH----HHHHHHHHHHhhh-c--CCChHHHHHHHHHHHH
Confidence 43322 2333333332211 1 2346778887776653
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.11 E-value=0.013 Score=66.50 Aligned_cols=459 Identities=12% Similarity=0.071 Sum_probs=218.5
Q ss_pred CCCHHHHHHHHHHHHHHhc-ChhHHH-HHHHHhhc-CCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHHHHHHHHH
Q 004389 17 HPDDAVRMQADRWLQDFQH-TIDAWQ-VADNLLHD-ATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDSLNTLLKK 93 (757)
Q Consensus 17 ~~d~~~r~~A~~~L~~~q~-s~~aw~-~~~~lL~~-~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~Ll~~l~~ 93 (757)
++|...|+-..-++..+-+ .|+.-. .+..+..+ .+.++.+|-.|+.+|-+-. +++-...+-..+...+..
T Consensus 81 s~~~~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~-------~~~~~~~l~~~l~~~L~~ 153 (618)
T 1w63_A 81 SQKFTDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG-------SSEMCRDLAGEVEKLLKT 153 (618)
T ss_dssp SSSHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHS
T ss_pred CCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHcC
Confidence 4455555555555554443 344222 22222211 1344556666666665432 222223333344444433
Q ss_pred hcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCC-CCchhHHHHHhhhchhhcccccccCChHHHHHHHH
Q 004389 94 FHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSH-PEFVPGFLELLTVLPEEVFNYKIAARPERRRQFEK 172 (757)
Q Consensus 94 ~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~-~~~~~~~L~~L~~L~ee~~~~~~~~~~~~r~~l~~ 172 (757)
.++.||++-+.++..++...+ +.=++ +++.+.+.+... +......+..|..+.+.- + ....
T Consensus 154 ---~~~~VRk~A~~al~~l~~~~p-~~v~~--~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~--------~----~~~~ 215 (618)
T 1w63_A 154 ---SNSYLRKKAALCAVHVIRKVP-ELMEM--FLPATKNLLNEKNHGVLHTSVVLLTEMCERS--------P----DMLA 215 (618)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCG-GGGGG--GGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH--------H----HHHH
T ss_pred ---CCHHHHHHHHHHHHHHHHHCh-HHHHH--HHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC--------h----HHHH
Confidence 568999999999999887543 22222 455555555432 222344555665554320 1 1123
Q ss_pred HHHHhHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhcc------CC-
Q 004389 173 ELTSQMEVALSTLTACLH-------------INELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSL------HS- 232 (757)
Q Consensus 173 ~l~~~~~~vl~~l~~~l~-------------~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L------~~- 232 (757)
.+....|.++.+|.+... ++-.+..+++++....... | +. ...+++.+...+ .+
T Consensus 216 ~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~---~-~~--~~~~~~~L~~l~~~~~~~~~~ 289 (618)
T 1w63_A 216 HFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND---D-DS--SEAMNDILAQVATNTETSKNV 289 (618)
T ss_dssp HHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC---H-HH--HHTTHHHHHHHHHTSCCSSTH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC---H-HH--HHHHHHHHHHHHhccccccch
Confidence 445566777777766432 2334556777777654421 1 00 112222222221 11
Q ss_pred -cchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHcCC
Q 004389 233 -EILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIATGS 311 (757)
Q Consensus 233 -~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~ 311 (757)
..+.-.|+.++..+ .. ...+.....+.+..+ +. +.|.+......+.+..++...+..+.
T Consensus 290 ~~aV~~ea~~~i~~l---~~---------~~~l~~~a~~~L~~~---L~--~~d~~vr~~aL~~L~~i~~~~p~~~~--- 349 (618)
T 1w63_A 290 GNAILYETVLTIMDI---KS---------ESGLRVLAINILGRF---LL--NNDKNIRYVALTSLLKTVQTDHNAVQ--- 349 (618)
T ss_dssp HHHHHHHHHHHHHHS---CC---------CHHHHHHHHHHHHHH---HT--CSSTTTHHHHHHHHHHHHHHHHHHHG---
T ss_pred HHHHHHHHHHHHHhc---CC---------CHHHHHHHHHHHHHH---Hh--CCCCchHHHHHHHHHHHHhhCHHHHH---
Confidence 12233344444332 10 111222122222121 21 12222222334455555555554443
Q ss_pred chhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHHHHHHHHHHHhhccCC
Q 004389 312 DESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSAYESLVSLVSFRVQYP 391 (757)
Q Consensus 312 ~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~k~~~p 391 (757)
.....++.+..+++..|...+++-.+.+.+. ....+++.+++..+-.
T Consensus 350 ----~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~------------------------~nv~~iv~eL~~~l~~----- 396 (618)
T 1w63_A 350 ----RHRSTIVDCLKDLDVSIKRRAMELSFALVNG------------------------NNIRGMMKELLYFLDS----- 396 (618)
T ss_dssp ----GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS------------------------SSTHHHHHHHHHHHHH-----
T ss_pred ----HHHHHHHHHccCCChhHHHHHHHHHHHHccc------------------------ccHHHHHHHHHHHHHh-----
Confidence 2234566777788888999988865544321 0112233333322211
Q ss_pred CCCCCCChhhhHHHHHhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcCh--hHHHHHHHHHHHHhHhhCCCCCCCcch
Q 004389 392 QDYQDLSLEDLKEFKHTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGG--DATLKILYIKFVEGVACCGNKHNEWRP 469 (757)
Q Consensus 392 ~d~~~~~~d~~~~f~~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~--~~~l~~l~~~l~~~~~~~~~~~~~w~~ 469 (757)
. + .+||.. +...+..++...++ ..++..+.+.+... .++-.
T Consensus 397 ~-----d-------~e~r~~-----------------~v~~I~~la~k~~~~~~~~v~~ll~lL~~~--------~~~v~ 439 (618)
T 1w63_A 397 C-----E-------PEFKAD-----------------CASGIFLAAEKYAPSKRWHIDTIMRVLTTA--------GSYVR 439 (618)
T ss_dssp C-----C-------HHHHHH-----------------HHHHHHHHHHSSCCCHHHHHHHHHHHHHHT--------GGGSC
T ss_pred C-----C-------HHHHHH-----------------HHHHHHHHHHHhCccHHHHHHHHHHHHHhc--------cchhH
Confidence 0 1 135666 66667777665543 35666666555432 12222
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcCC-CCChHHHHHHHHHHHHhhHHHHhhC------CC--CchhHHHHHHHH
Q 004389 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-LPQQPQLLQTVCLTIGAYSKWFDAA------SS--DPSILASVLSIL 540 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l~~~~~l~~t~~~~ig~~~~~l~~~------~~--~~~~l~~~l~~l 540 (757)
.| ++..+..+....++-....+..++..+.. ....+.+ ..++|++|.|++.+... |. ....+..++..+
T Consensus 440 ~~-~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~-~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~ 517 (618)
T 1w63_A 440 DD-AVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLV-QVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESV 517 (618)
T ss_dssp SS-HHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHH-HHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHH-HHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHH
Confidence 23 33444545444333223345666666542 2223444 57999999999988641 10 012344444444
Q ss_pred HhccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 541 TSGMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 541 ~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
++....+..++..+..|+.++...+.. ..+.+...+.... . ..+.+.|.+.++....+
T Consensus 518 l~~~~~~~~vr~~~lta~~Kl~~~~~~----~~~~l~~~L~~~~-~----~~d~evrdRA~~y~~ll 575 (618)
T 1w63_A 518 LISNMSTSVTRGYALTAIMKLSTRFTC----TVNRIKKVVSIYG-S----SIDVELQQRAVEYNALF 575 (618)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHTTCSS----CHHHHHHHHHHHT-T----CSCHHHHHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHhc-C----CCCHHHHHHHHHHHHHH
Confidence 443233334999999999999865532 1222323333222 1 24567788888766543
No 26
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.02 E-value=9.9e-05 Score=73.24 Aligned_cols=196 Identities=9% Similarity=0.026 Sum_probs=136.5
Q ss_pred hHHHHHHHHHHHHh-hHHHHhhCCCCc---hhHHHHHHHHHhcc-CCCh-HHHHHHHHHHHHHHHHhh-hhhc-CCHHHH
Q 004389 505 QPQLLQTVCLTIGA-YSKWFDAASSDP---SILASVLSILTSGM-STSE-DTAAAAALAFRHICDDCR-KKLC-GYLDGL 576 (757)
Q Consensus 505 ~~~l~~t~~~~ig~-~~~~l~~~~~~~---~~l~~~l~~l~~~l-~~~~-~v~~~Aa~al~~l~~~~~-~~l~-p~l~~l 576 (757)
...-|..++..++. +.+ .+|... .-+..++..+.+.+ .+++ .|+..|+.++..+++..+ +.+. +|...+
T Consensus 29 ~w~eRk~al~~L~~~~~~---~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~l 105 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLS---QTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLV 105 (249)
T ss_dssp SHHHHHHHHHHHHHHTGG---GCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh---cCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHH
Confidence 67889999998888 653 222210 12346677787888 4544 489999999999999998 8898 999999
Q ss_pred HHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHH
Q 004389 577 YNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDR 656 (757)
Q Consensus 577 l~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 656 (757)
+..+.+.+... ....+..+..++-.++..+++.....+ +..++..+...++.. .+......+..
T Consensus 106 lp~ll~~l~dk-----k~~V~~aa~~al~~i~~~~~~~~~~~~----l~~ll~~l~~~l~~k-------~~~vk~~al~~ 169 (249)
T 2qk1_A 106 FTPLLDRTKEK-----KPSVIEAIRKALLTICKYYDPLASSGR----NEDMLKDILEHMKHK-------TPQIRMECTQL 169 (249)
T ss_dssp HHHHHHGGGCC-----CHHHHHHHHHHHHHHHHHSCTTCTTCT----THHHHHHHHHHTTCS-------SHHHHHHHHHH
T ss_pred HHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHccccccCCc----HHHHHHHHHHHHcCC-------ChHHHHHHHHH
Confidence 98888877531 245566677777666666543111111 334444444444422 12334567788
Q ss_pred HHHHhhhcCC-CcchHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-hhhhHHHHH
Q 004389 657 FAYIFRYVNH-PEAVADAI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRF-MGITIGAIL 721 (757)
Q Consensus 657 l~~~~~~~~~-~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~-~~p~l~~~~ 721 (757)
|+.++...+. |..+.+.+ ..++|.+...+.. .+++|+++++.+++.+.+.+|+. +.|+++.+-
T Consensus 170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D--~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld 235 (249)
T 2qk1_A 170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND--TQPAIRTIGFESFAILIKIFGMNTFVKTLEHLD 235 (249)
T ss_dssp HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSC
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Confidence 8888776653 24466788 8999999988843 68999999999999999999985 999998753
No 27
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.99 E-value=0.014 Score=70.32 Aligned_cols=251 Identities=12% Similarity=0.056 Sum_probs=139.1
Q ss_pred cchhhHHHHHHHHhhcccCccc-cccHHH----HHhhc---CCCCC-hHHHHHHHHHHHHhhHHHHh---hC--------
Q 004389 467 WRPAEAALFCIRAISTYVSVVE-AEVMPQ----VMALL---PKLPQ-QPQLLQTVCLTIGAYSKWFD---AA-------- 526 (757)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~----l~~~l---~~l~~-~~~l~~t~~~~ig~~~~~l~---~~-------- 526 (757)
-...+.++-+++.++..++.++ .+++.. +++.+ .+.+. .+.-+...+..++.++.-+. ..
T Consensus 600 ~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~ 679 (971)
T 2x1g_F 600 NSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQ 679 (971)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccc
Confidence 4567778888888877665222 223333 33322 12221 22233444445544444332 11
Q ss_pred --CC-CchhHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHH
Q 004389 527 --SS-DPSILASVLSILTSGM---STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHL 600 (757)
Q Consensus 527 --~~-~~~~l~~~l~~l~~~l---~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l 600 (757)
++ ...+.+.+++++.+.+ .+...+...|+.++.+++...++.+.||++.+++.+...+++. . . ...
T Consensus 680 ~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~---~----~-~~~ 751 (971)
T 2x1g_F 680 PIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTR---C----C-APT 751 (971)
T ss_dssp ----CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC-----C----C-HHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcC---C----c-hHH
Confidence 11 1234555555554433 2222499999999999999988899999999999887766531 1 1 347
Q ss_pred HHHHHHHHhcCChH-HHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchH--HH-HHH
Q 004389 601 VEALSMVITELPQV-DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVA--DA-IQR 676 (757)
Q Consensus 601 ~eai~~vi~~~~~e-~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~~-~~~ 676 (757)
++.++.++..++.+ ...+.+..++.+++...-+.+.+...+..+..+.....+++.++.+++... +.+. +. ++.
T Consensus 752 l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p--~~~~~s~~~l~~ 829 (971)
T 2x1g_F 752 LEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIP--QVLEDKTLAYDR 829 (971)
T ss_dssp HHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSG--GGGGCTTSCHHH
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCc--HHHcCCcccHHH
Confidence 88888889988764 455667777777776666666543100001123344556777777776532 2222 33 466
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh--hh----hhhhhHHHHHHHHHHHHh
Q 004389 677 LWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS--KR----FMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 677 ~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~--~~----~~~p~l~~~~~~l~~~~~ 729 (757)
+++.....+.. .+.....++|.++..++..- +. .+.++.+.++..+.....
T Consensus 830 i~~~~~~~l~~--~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~ 886 (971)
T 2x1g_F 830 LVFYAQRGMTL--PESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVG 886 (971)
T ss_dssp HHHHHHHHHTS--SCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--CCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhc
Confidence 66666555542 45566778888888866642 22 244455666666655543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.68 E-value=0.045 Score=60.60 Aligned_cols=226 Identities=17% Similarity=0.157 Sum_probs=125.6
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhh------CCCCchh
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDA------ASSDPSI 532 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~------~~~~~~~ 532 (757)
..++.-++.++.+++.++...... ....++.++..+.. .++.++..++.++|.++..-.. +.. .
T Consensus 255 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~ 329 (528)
T 4b8j_A 255 SNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH--PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ---A 329 (528)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---H
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--CChhHHHHHHHHHHHHHcCCHHHHHHHHHhh---h
Confidence 356777889999999988664321 12456677766643 3689999999999998751110 111 3
Q ss_pred HHHHHHHHHhccCCC--hHHHHHHHHHHHHHHHHhhh---hhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHH
Q 004389 533 LASVLSILTSGMSTS--EDTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (757)
Q Consensus 533 l~~~l~~l~~~l~~~--~~v~~~Aa~al~~l~~~~~~---~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~ 605 (757)
++.++.. +.++ ..++..|+.++.+++..... .+. ..++.++..+ ..+ +.+.+...+.+++
T Consensus 330 l~~L~~l----L~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL----~~~-----~~~v~~~a~~aL~ 396 (528)
T 4b8j_A 330 LPCLLSL----LTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLL----QTA-----EFDIKKEAAWAIS 396 (528)
T ss_dssp HHHHHHH----HHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHH----HHS-----CHHHHHHHHHHHH
T ss_pred HHHHHHH----HcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHH----hcC-----CHHHHHHHHHHHH
Confidence 4444444 4333 35999999999999864332 222 3444455444 321 3677889999999
Q ss_pred HHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC--------CcchHHHHHH-
Q 004389 606 MVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH--------PEAVADAIQR- 676 (757)
Q Consensus 606 ~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--------~~~~~~~~~~- 676 (757)
.+.....++....... ...+..|.+++... .......+++.++.+++.... ..++...+.+
T Consensus 397 nl~~~~~~~~~~~l~~---~~~i~~L~~lL~~~-------d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 466 (528)
T 4b8j_A 397 NATSGGSHDQIKYLVS---EGCIKPLCDLLICP-------DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEA 466 (528)
T ss_dssp HHHHHSCHHHHHHHHH---TTCHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHH---CCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHC
Confidence 9887744443322221 23444455555431 122334556666666554311 1233344332
Q ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hhhhhhhhHHH
Q 004389 677 -LWPIFKAIFDIRAWDMRTMESLCRACKYAVRT-SKRFMGITIGA 719 (757)
Q Consensus 677 -~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~-~~~~~~p~l~~ 719 (757)
.++.+..+.. ..++++.+.+..++...+.. -++.+.++++.
T Consensus 467 ~~~~~l~~L~~--~~~~~v~~~a~~il~~~~~~e~~~~~~~~~~~ 509 (528)
T 4b8j_A 467 EGLEKIENLQS--HDNNEIYEKAVKILEAYWMDEEDDTMGATTVA 509 (528)
T ss_dssp THHHHHHHGGG--CSSHHHHHHHHHHHHHHCC-------------
T ss_pred CcHHHHHHHHc--CCCHHHHHHHHHHHHHHCCCcccccccccCCC
Confidence 3555555432 25788999999999887764 44555565544
No 29
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.49 E-value=0.045 Score=65.64 Aligned_cols=257 Identities=8% Similarity=0.074 Sum_probs=145.5
Q ss_pred cchhhHHHHHHHHhhcccC-ccccccHHHHHhhc-------CCCCChHH---HHHHHHHHHHhhHHHHhhC---------
Q 004389 467 WRPAEAALFCIRAISTYVS-VVEAEVMPQVMALL-------PKLPQQPQ---LLQTVCLTIGAYSKWFDAA--------- 526 (757)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~-~~~~~~l~~l~~~l-------~~l~~~~~---l~~t~~~~ig~~~~~l~~~--------- 526 (757)
-+.++.++-+++.++...+ +...+++..+++.+ .+-+.++. .+...+.+++.....+...
T Consensus 584 ~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~ 663 (963)
T 2x19_B 584 TSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGP 663 (963)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC------
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 3566777888888877665 22234455544432 11122332 3335566666655554321
Q ss_pred ----------CC-CchhHHHHHHHHHhcc----CCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCC
Q 004389 527 ----------SS-DPSILASVLSILTSGM----STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLK 591 (757)
Q Consensus 527 ----------~~-~~~~l~~~l~~l~~~l----~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~ 591 (757)
++ ...+...+++.+.+.+ +++. +...++.++++++..++..+.|+++.+++.+.....+.
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~---- 738 (963)
T 2x19_B 664 ELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQ-VVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTI---- 738 (963)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHS----
T ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchH-HHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcC----
Confidence 01 0124455555444333 3344 89999999999998888888999999998776655431
Q ss_pred CChhhHHHHHHHHHHHHh--cCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcc
Q 004389 592 VSAEDSLHLVEALSMVIT--ELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEA 669 (757)
Q Consensus 592 l~~~~~~~l~eai~~vi~--~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 669 (757)
... .++..++.++. +.+ +...+.+..++..++...-.+++.... ..+......++.++.+++.... .
T Consensus 739 -~~~---~~l~l~~~li~~f~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~----~~pd~~~~~f~ll~~~~~~~~~--~ 807 (963)
T 2x19_B 739 -PQA---SALDLTRQLVHIFAHE-PAHFPPIEALFLLVTSVTLTLFQQGPR----DHPDIVDSFMQLLAQALKRKPD--L 807 (963)
T ss_dssp -CCH---HHHHHHHHHHHHHTTC-TTTCHHHHHHHHHHHHHHHHHHHHCTT----TCHHHHHHHHHHHHHHHHHCGG--G
T ss_pred -Ccc---HHHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHHHHHHhhCcc----cCchHHHHHHHHHHHHHHhCcH--H
Confidence 112 23444555555 332 112234444555555544444442211 1234455677888888776532 1
Q ss_pred h--HHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHhhcCCcchHhhH
Q 004389 670 V--ADA-IQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK------RFMGITIGAILEEIQGLYQQHQQPCFLYLS 740 (757)
Q Consensus 670 ~--~~~-~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~------~~~~p~l~~~~~~l~~~~~~~~~~~~l~~~ 740 (757)
+ .+. ++.+++.+...+. ..+..+...++.++..++...+ ..+.++.+.++..+........+.+-+..+
T Consensus 808 ~~~~~~~~~~i~~~~~~~l~--~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~ 885 (963)
T 2x19_B 808 FLCERLDVKAVFQCAVLALK--FPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCF 885 (963)
T ss_dssp GGCTTSCHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHH
T ss_pred HcCCcccHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHH
Confidence 1 122 4555665555554 2577888999999999886543 345678888888887777644444444333
Q ss_pred H
Q 004389 741 S 741 (757)
Q Consensus 741 ~ 741 (757)
+
T Consensus 886 ~ 886 (963)
T 2x19_B 886 A 886 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.44 E-value=0.0095 Score=71.00 Aligned_cols=154 Identities=10% Similarity=0.060 Sum_probs=94.9
Q ss_pred CChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 004389 546 TSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCL 625 (757)
Q Consensus 546 ~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~ 625 (757)
....++.+++.+|+++....+..+.|+++.+++.+.... +..+....+.-+|.++.....+ ..+.+..++.
T Consensus 713 ~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~--------~~~e~~~fL~l~~qli~~f~~~-~~~~l~~ll~ 783 (980)
T 3ibv_A 713 FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSI--------DMNELVDVLSFISQLIHIYKDN-MMEITNRMLP 783 (980)
T ss_dssp CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHC--------CTTTHHHHHHHHHHHHHHTTTT-SHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334499999999999999889999999999999887432 2445667778888889998866 7788999999
Q ss_pred hHHHHHHHHHhcCCCcccccCcch---h-hHHHHHHHHHhhhcCCCcchHHHH-HHHHH-HHHHHHHhc--CCCHHHHHH
Q 004389 626 PVVTPLQEIINQGPEILQKKHPRD---L-TVHIDRFAYIFRYVNHPEAVADAI-QRLWP-IFKAIFDIR--AWDMRTMES 697 (757)
Q Consensus 626 ~~~~~l~~~~~~~~~~~~~~~~~~---~-~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~-~l~~~l~~~--~~~~~v~e~ 697 (757)
|++.++-..+++...+.+ ..+. + ...+..+..++..-- +..+..-- +..++ ++..++.-- -.|+.....
T Consensus 784 ~l~~~if~~l~~~~~~td--~~r~~~~l~r~~~~fl~~i~~~~~-~~v~~s~~n~~~l~~~l~~l~~~a~~~~d~~~~K~ 860 (980)
T 3ibv_A 784 TLLMRIFSSLSAAPQGTD--DAVKQNDLRKSYISFILQLLNKGF-GSILFTEENQVYFDPLINSILHFANLVGEPATQKS 860 (980)
T ss_dssp HHHHHHHHHTTC----CC--HHHHHHHHHHHHHHHHHHHHHTTC-TGGGGSHHHHTTHHHHHHHHHHHC-----CHHHHH
T ss_pred HHHHHHHHHhcCCCCCcH--HHHHHHHHHHHHHHHHHHHHhCCc-hhhhcCCcchHHHHHHHHHHHHHhccCCChHHHHH
Confidence 999999999886543221 1111 1 113344444444211 11111000 11222 333333211 146777788
Q ss_pred HHHHHHHHHHHhhh
Q 004389 698 LCRACKYAVRTSKR 711 (757)
Q Consensus 698 ~~~~~~~~~~~~~~ 711 (757)
++.++.+++...|.
T Consensus 861 a~~~l~~~v~~~~~ 874 (980)
T 3ibv_A 861 SIALVSKMVSLWGG 874 (980)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHCC
Confidence 89999999998753
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.41 E-value=0.019 Score=63.70 Aligned_cols=220 Identities=13% Similarity=0.103 Sum_probs=126.4
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l-~~~l~ 538 (757)
.+..-++.++.+++.++...... ....++.++..+.. .++.++..++.++|.++.--....+ ..+ ..+++
T Consensus 269 ~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~ 344 (530)
T 1wa5_B 269 MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--ESTLVQTPALRAVGNIVTGNDLQTQ--VVINAGVLP 344 (530)
T ss_dssp CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--CChhhHHHHHHHHHHHHcCCHHHHH--HHHHcchHH
Confidence 44666788899999888653321 12456777776642 3689999999999988631110000 001 13455
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhc-----CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKKLC-----GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~-----p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
.+...+.++. .++..|+.++.+++..+..... ..++.+++.+ ..+ +.+.+.....+++.++...+
T Consensus 345 ~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL----~~~-----~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 345 ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL----EVA-----EYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH----HHS-----CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH----hcC-----CHHHHHHHHHHHHHHHhcCC
Confidence 5555565543 5999999999999864433221 3445555544 321 36778899999999887654
Q ss_pred h--HHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC--------CCcchHHHHHH--HHHH
Q 004389 613 Q--VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN--------HPEAVADAIQR--LWPI 680 (757)
Q Consensus 613 ~--e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~--------~~~~~~~~~~~--~~~~ 680 (757)
+ +....... ...+..|.+++... .......++..+..+++... ..+++...+.+ .++.
T Consensus 416 ~~~~~~~~l~~---~~~l~~L~~ll~~~-------~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 485 (530)
T 1wa5_B 416 QRPDIIRYLVS---QGCIKPLCDLLEIA-------DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485 (530)
T ss_dssp TCTHHHHHHHH---TTCHHHHHHHTTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHH
T ss_pred CcHHHHHHHHH---CCCHHHHHHHHhCC-------CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHH
Confidence 3 33322221 23444444555421 12233345566666555321 11233333322 4566
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 004389 681 FKAIFDIRAWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 681 l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 709 (757)
+..+..+ .+++|.+.+..++.+++..-
T Consensus 486 L~~L~~~--~~~~v~~~a~~il~~~~~~~ 512 (530)
T 1wa5_B 486 IFNCQQN--ENDKIYEKAYKIIETYFGEE 512 (530)
T ss_dssp HHGGGGC--SCHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHcC--CCHHHHHHHHHHHHHHCCcc
Confidence 6554432 56889999999988877653
No 32
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.24 E-value=0.0059 Score=60.04 Aligned_cols=184 Identities=7% Similarity=0.018 Sum_probs=123.0
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh-CcCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN-GEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~-~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~ 617 (757)
+.+.+++.+ +.+..|..+|..+++.|.....+....++..+...+. . -+...+...+.+++.++..+++ ...
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd-----~~~~V~~~a~~~l~~la~~l~~-~~~ 93 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD-----SNVVLVAMAGKCLALLAKGLAK-RFS 93 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHC-----SCHHHHHHHHHHHHHHHHHHGG-GGH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHHHHHHHhh-hHH
Confidence 444555543 5899999999999998766555666888888888874 3 2356778889999988877643 344
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHH
Q 004389 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMES 697 (757)
Q Consensus 618 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~ 697 (757)
++...++.+++.. +.... ...+..+...+..++.... ++.++|.+...+.+ .++.+++.
T Consensus 94 ~~~~~ilp~ll~~----l~d~~-------~~vr~~a~~aL~~~~~~~~--------~~~ll~~l~~~l~~--~~~~vr~~ 152 (242)
T 2qk2_A 94 NYASACVPSLLEK----FKEKK-------PNVVTALREAIDAIYASTS--------LEAQQESIVESLSN--KNPSVKSE 152 (242)
T ss_dssp HHHHHHHHHHHHG----GGCCC-------HHHHHHHHHHHHHHHTTSC--------HHHHHHHHHHHTTC--SCHHHHHH
T ss_pred HHHHHHHHHHHHH----HcCCC-------HHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHcC--CChHHHHH
Confidence 5666666555543 33211 1122334555666655432 25567777666654 47899999
Q ss_pred HHHHHHHHHHHhhh--hhhhhHHHHHHHHHHHHhhcCC---cchHhhHHHHHHHhCCc
Q 004389 698 LCRACKYAVRTSKR--FMGITIGAILEEIQGLYQQHQQ---PCFLYLSSEVIKVVFPP 750 (757)
Q Consensus 698 ~~~~~~~~~~~~~~--~~~p~l~~~~~~l~~~~~~~~~---~~~l~~~~~~i~~f~~~ 750 (757)
++.++..++...+. .+.++++.+++.+......... .....+++.+...+|++
T Consensus 153 ~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~ 210 (242)
T 2qk2_A 153 TALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDK 210 (242)
T ss_dssp HHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHH
Confidence 99999998888764 4678999999999888853221 33566667777777753
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.10 E-value=0.0088 Score=64.71 Aligned_cols=222 Identities=10% Similarity=0.050 Sum_probs=128.1
Q ss_pred CCcchhhHHHHHHHHhhccc-Cccc----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYV-SVVE----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~-~~~~----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.++.-++.++++++.++..- +... ...++.++..+.. .++.++..++++++.++..-..+... -.-..+++.
T Consensus 162 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~ 238 (450)
T 2jdq_A 162 NRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFV--SDTDVLADACWALSYLSDGPNDKIQA-VIDAGVCRR 238 (450)
T ss_dssp CCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHTSSSHHHHHH-HHHTTTHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHCCCcHHHHH-HHHcCcHHH
Confidence 56788899999999998764 2211 2446666666542 36889999999999887532110000 000123444
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHH
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~ 615 (757)
+++.+.+++ .++..|+.++.+++..... .+.. ..++..+.+++..+ +...+...+.+++.+...- ++.
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~-----~~~vr~~a~~~L~~l~~~~-~~~ 310 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN--CSALQSLLHLLSSP-----KESIKKEACWTISNITAGN-RAQ 310 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT--TTHHHHHHHHTTCS-----SHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH--CccHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC-HHH
Confidence 445554433 5999999999999865432 2221 13555666666532 3567888888888876542 222
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHH
Q 004389 616 AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRT 694 (757)
Q Consensus 616 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v 694 (757)
....+. ..++..+.+.+.... ......+...++.+..... ++....++ ..++|.+..++.. .++++
T Consensus 311 ~~~~~~---~~~l~~L~~~l~~~~-------~~v~~~a~~~L~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~--~~~~v 377 (450)
T 2jdq_A 311 IQTVID---ANIFPALISILQTAE-------FRTRKEAAWAITNATSGGS-AEQIKYLVELGCIKPLCDLLTV--MDSKI 377 (450)
T ss_dssp HHHHHH---TTHHHHHHHHHHHSC-------HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHTCHHHHHHGGGS--SCHHH
T ss_pred HHHHHH---CCCHHHHHHHHhcCC-------HHHHHHHHHHHHHHHcCCC-HHHHHHHHHCCCHHHHHHHhcC--CCHHH
Confidence 222222 133334444444221 1222234455555544322 22233233 3577888777764 47899
Q ss_pred HHHHHHHHHHHHHHhh
Q 004389 695 MESLCRACKYAVRTSK 710 (757)
Q Consensus 695 ~e~~~~~~~~~~~~~~ 710 (757)
++.++.++..++....
T Consensus 378 ~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 378 VQVALNGLENILRLGE 393 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhch
Confidence 9999999999887544
No 34
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.05 E-value=0.014 Score=64.94 Aligned_cols=223 Identities=13% Similarity=0.177 Sum_probs=130.6
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.++.-++.++++++.++..-+.. ....++.++..+.. .++.++..++++++.++..-...+. ......+++.
T Consensus 185 ~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~L~~~~~~~~~-~~~~~~~l~~ 261 (530)
T 1wa5_B 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS--NKPSLIRTATWTLSNLCRGKKPQPD-WSVVSQALPT 261 (530)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS--CCHHHHHHHHHHHHHHHCCSSSCCC-HHHHGGGHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc--CCHHHHHHHHHHHHHHhCCCCCCCc-HHHHHhHHHH
Confidence 35677899999999998653221 13457777777755 4788999999999988753211111 1233455666
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHH-HHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLD-GLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~-~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~ 617 (757)
+.+.+.++. .++..|+.+|.+++..........+. .++..+..++.. -+...+...+.+++.+...-+ +...
T Consensus 262 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~ 335 (530)
T 1wa5_B 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH-----ESTLVQTPALRAVGNIVTGND-LQTQ 335 (530)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHTTSCH-HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC-----CChhhHHHHHHHHHHHHcCCH-HHHH
Confidence 666665543 59999999999999643221111111 233444444543 235677888888888765532 2222
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHHHH
Q 004389 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTME 696 (757)
Q Consensus 618 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~e 696 (757)
..+. ...+..+.+++... .......++..++.+... .++....++ ..++|.+..++.. .+++++.
T Consensus 336 ~~~~---~~~l~~L~~lL~~~-------~~~vr~~A~~aL~~l~~~--~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~ 401 (530)
T 1wa5_B 336 VVIN---AGVLPALRLLLSSP-------KENIKKEACWTISNITAG--NTEQIQAVIDANLIPPLVKLLEV--AEYKTKK 401 (530)
T ss_dssp HHHH---TTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTCHHHHHHHHHH--SCHHHHH
T ss_pred HHHH---cchHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhc--CCHHHHH
Confidence 2221 13444444555422 112223345555555432 122222333 3578888888865 5789999
Q ss_pred HHHHHHHHHHHHhh
Q 004389 697 SLCRACKYAVRTSK 710 (757)
Q Consensus 697 ~~~~~~~~~~~~~~ 710 (757)
.++.+++.+....+
T Consensus 402 ~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 402 EACWAISNASSGGL 415 (530)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999887543
No 35
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.00 E-value=0.014 Score=63.08 Aligned_cols=218 Identities=13% Similarity=0.158 Sum_probs=130.1
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.++.-++.++.+++.++...... ....++.++..+.. +.++.++..++++++.++..-...+. ......+++.
T Consensus 119 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~l~~ 196 (450)
T 2jdq_A 119 EFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPE-FAKVSPCLNV 196 (450)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCC-GGGTGGGHHH
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHH
Confidence 46777899999999998764321 12456777776653 23789999999999998753211111 1233556666
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhh---hhhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCCh
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDDCR---KKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~~~---~~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (757)
+.+.+.+++ .++..|+.++.++|.... ..+. ..++.++. ++.. -+.+.+...+.+++.+...-+
T Consensus 197 L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~----ll~~-----~~~~v~~~a~~~L~~l~~~~~- 266 (450)
T 2jdq_A 197 LSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVE----LLMH-----NDYKVVSPALRAVGNIVTGDD- 266 (450)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHH----HTTC-----SCHHHHHHHHHHHHHHTTSCH-
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHH----HHCC-----CchhHHHHHHHHHHHHhhCCh-
Confidence 666665443 599999999999986422 1221 34444444 4432 235678888888888766532
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCH
Q 004389 614 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDM 692 (757)
Q Consensus 614 e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~ 692 (757)
+.....+. ...+..+.+++... .......++..++.+..+ .++....++ ..++|.+..++.. .++
T Consensus 267 ~~~~~~~~---~~~l~~L~~ll~~~-------~~~vr~~a~~~L~~l~~~--~~~~~~~~~~~~~l~~L~~~l~~--~~~ 332 (450)
T 2jdq_A 267 IQTQVILN---CSALQSLLHLLSSP-------KESIKKEACWTISNITAG--NRAQIQTVIDANIFPALISILQT--AEF 332 (450)
T ss_dssp HHHHHHHT---TTHHHHHHHHTTCS-------SHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHHHH--SCH
T ss_pred HHHHHHHH---CccHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhc--CCH
Confidence 22111111 13444555555431 112233455556655432 122222333 3678888888875 578
Q ss_pred HHHHHHHHHHHHHHHH
Q 004389 693 RTMESLCRACKYAVRT 708 (757)
Q Consensus 693 ~v~e~~~~~~~~~~~~ 708 (757)
+++..+|.+++.+...
T Consensus 333 ~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 333 RTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999998765
No 36
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.95 E-value=0.78 Score=51.63 Aligned_cols=112 Identities=11% Similarity=0.071 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHH
Q 004389 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKW 522 (757)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~ 522 (757)
+.++..+.+.+.... +.-.-|+ +..+..+....+.-....+..++..+..-..+..+...++|++|.|++.
T Consensus 440 ~~~v~~Ll~ll~~~~--------~~v~~ev-~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~ 510 (621)
T 2vgl_A 440 TWYVDTILNLIRIAG--------DYVSEEV-WYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEFGNL 510 (621)
T ss_dssp HHHHHHHHHHHHHHG--------GGSCSHH-HHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHhhc--------ccchHHH-HHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcchHHH
Confidence 467777766665431 1111233 3333333333222222234555555543223567778888999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhccC-CChHHHHHHHHHHHHHHHHh
Q 004389 523 FDAASSDPSILASVLSILTSGMS-TSEDTAAAAALAFRHICDDC 565 (757)
Q Consensus 523 l~~~~~~~~~l~~~l~~l~~~l~-~~~~v~~~Aa~al~~l~~~~ 565 (757)
+...+.. .-..++..+.+.+. .+..++..+-.|+.++...+
T Consensus 511 ~~~~~~~--~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~ 552 (621)
T 2vgl_A 511 IAGDPRS--SPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF 552 (621)
T ss_dssp HHSSTTS--CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC
T ss_pred hcccCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC
Confidence 9876531 11244555554443 33459999999999987655
No 37
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.82 E-value=0.093 Score=59.31 Aligned_cols=146 Identities=9% Similarity=0.103 Sum_probs=89.8
Q ss_pred HHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCC
Q 004389 449 LYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASS 528 (757)
Q Consensus 449 l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~ 528 (757)
..+.+.+-+. +.+-..+-.|+.+++.++.. +-....++.+...+.+ .+|.||++|+.+++++.. .+|+
T Consensus 108 ~in~l~kDL~-----~~n~~vr~lAL~~L~~i~~~--~~~~~l~~~l~~~L~~--~~~~VRk~A~~al~~l~~---~~p~ 175 (618)
T 1w63_A 108 MTNCIKNDLN-----HSTQFVQGLALCTLGCMGSS--EMCRDLAGEVEKLLKT--SNSYLRKKAALCAVHVIR---KVPE 175 (618)
T ss_dssp HHHHHHHHHS-----CSSSHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHH---HCGG
T ss_pred HHHHHHHhcC-----CCCHhHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHH---HChH
Confidence 4455554432 23344456788888887632 1011223344444432 489999999999998875 3565
Q ss_pred CchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHHhhCcCCC------CCChhhHH
Q 004389 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSL------KVSAEDSL 598 (757)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~---~~l~p~l~~ll~~~~~l~~~~~~~------~l~~~~~~ 598 (757)
.++.+++.+...+.+++ .|+..|..+|..+|.... ..+.+.++.++..+.++...+... ..++.-+.
T Consensus 176 ---~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~ 252 (618)
T 1w63_A 176 ---LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQV 252 (618)
T ss_dssp ---GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHH
T ss_pred ---HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHH
Confidence 56667777777777654 599999999999986443 245577788887777764321000 12345566
Q ss_pred HHHHHHHHHHh
Q 004389 599 HLVEALSMVIT 609 (757)
Q Consensus 599 ~l~eai~~vi~ 609 (757)
.+++.++.+..
T Consensus 253 ~il~~L~~l~~ 263 (618)
T 1w63_A 253 RILRLLRILGR 263 (618)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 67777766544
No 38
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.79 E-value=0.053 Score=60.04 Aligned_cols=222 Identities=10% Similarity=0.088 Sum_probs=131.1
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.+..-++.++++++.++...+.. ....++.++..+..- .++.++..++++++.++..-. .+. ......+++.
T Consensus 172 ~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~~~~~-~~~-~~~~~~~l~~ 248 (528)
T 4b8j_A 172 SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFCRGKP-QPS-FEQTRPALPA 248 (528)
T ss_dssp SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHHCSSS-CCC-HHHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCCC-CCc-HHHHHHHHHH
Confidence 45677899999999998643221 124577777766432 378999999999999876431 111 1244567777
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l-~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~ 617 (757)
+.+.+.++. .++..|+.+|.+++..........+ ..++..+..++..+ +...+...+.+++.+...- ++...
T Consensus 249 L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-----~~~v~~~a~~~L~nl~~~~-~~~~~ 322 (528)
T 4b8j_A 249 LARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-----SPSVLIPALRTVGNIVTGD-DAQTQ 322 (528)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSC-HHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-----ChhHHHHHHHHHHHHHcCC-HHHHH
Confidence 777776543 5999999999999854322111000 02333444445432 3567888888888877643 22222
Q ss_pred HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHHHH
Q 004389 618 KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTME 696 (757)
Q Consensus 618 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~e 696 (757)
..+. ...+..|.+++.... .......+...++.+... .++....++ ..++|.+..++.. .++++++
T Consensus 323 ~~~~---~~~l~~L~~lL~~~~------~~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~ 389 (528)
T 4b8j_A 323 CIID---HQALPCLLSLLTQNL------KKSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQT--AEFDIKK 389 (528)
T ss_dssp HHHT---TTHHHHHHHHHHSCC------CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHH--SCHHHHH
T ss_pred HHHH---hhhHHHHHHHHcCCC------cHHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhc--CCHHHHH
Confidence 2221 234444555565321 011122344445554432 122222333 3678888888876 4789999
Q ss_pred HHHHHHHHHHHH
Q 004389 697 SLCRACKYAVRT 708 (757)
Q Consensus 697 ~~~~~~~~~~~~ 708 (757)
.++.++..+...
T Consensus 390 ~a~~aL~nl~~~ 401 (528)
T 4b8j_A 390 EAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999998776
No 39
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.60 E-value=0.03 Score=66.91 Aligned_cols=208 Identities=10% Similarity=0.080 Sum_probs=130.1
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC-----Ch-HHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Q 004389 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST-----SE-DTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (757)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~-----~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll 577 (757)
.+...+.++++++|..++-..... ...+++.+++.+++.+.+ ++ .|+..+++.+.++++-...+ ..++++++
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~-e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L~~vl 542 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDT-EKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchh-HHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 368899999999999876432110 013788999988876542 22 35667789999888766432 23577777
Q ss_pred HHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH--------HHhhhhHHHHHHHHHhcCCCcccccCcch
Q 004389 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--------EMLCLPVVTPLQEIINQGPEILQKKHPRD 649 (757)
Q Consensus 578 ~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l--------~~l~~~~~~~l~~~~~~~~~~~~~~~~~~ 649 (757)
+.+.+.+... .+..+.....|+..+..... ..+ ..++.++++.+.++.... ..+.
T Consensus 543 ~~L~~~l~~~-----~~~v~~~A~~al~~l~~~c~-----~~l~~~~~~e~~p~~~~il~~l~~~~~~l-------~~~~ 605 (1023)
T 4hat_C 543 LKLFEFMHET-----HEGVQDMACDTFIKIVQKCK-----YHFVIQQPRESEPFIQTIIRDIQKTTADL-------QPQQ 605 (1023)
T ss_dssp HHHHHHTTCS-----CHHHHHHHHHHHHHHHHHHT-----HHHHSCCTTCSSCHHHHHHHTHHHHHTTS-------CHHH
T ss_pred HHHHHHhhcC-----CHHHHHHHHHHHHHHHHHHH-----HHhhccCCCCCchhHHHHHHHHHHHHHhC-------CHHH
Confidence 7777655321 13456666677776665532 222 124455555555655421 1234
Q ss_pred hhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcC----------CCHHHH---HHHHHHHHHHHHHhhhhhhhh
Q 004389 650 LTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTM---ESLCRACKYAVRTSKRFMGIT 716 (757)
Q Consensus 650 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~v~---e~~~~~~~~~~~~~~~~~~p~ 716 (757)
.....+.++.+++.++..+.....++.+++.+...+.... .|++.. -.+++++..+...+|..+.|+
T Consensus 606 ~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~ 685 (1023)
T 4hat_C 606 VHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQ 685 (1023)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHH
Confidence 5567899999999886422244566666665554443322 122223 335666667788899999999
Q ss_pred HHHHHHHHHHHHhh
Q 004389 717 IGAILEEIQGLYQQ 730 (757)
Q Consensus 717 l~~~~~~l~~~~~~ 730 (757)
+.++...+++.|+.
T Consensus 686 ~~~i~~~~l~~y~~ 699 (1023)
T 4hat_C 686 LGHIYYNMLQLYRA 699 (1023)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99998888877664
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.57 E-value=0.84 Score=50.27 Aligned_cols=223 Identities=12% Similarity=0.127 Sum_probs=118.6
Q ss_pred CcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHH
Q 004389 466 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSIL 540 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l 540 (757)
+-+-++.++++++.++..-... ....++.++..+.. .++.++..++.++|..+..-..+... -.-..+++.+
T Consensus 264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~-i~~~g~l~~L 340 (529)
T 3tpo_A 264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQK-VIDAGALAVF 340 (529)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGH
T ss_pred cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC--CChhHHHHHHHHHHHHHccchHHHHH-HhhcccHHHH
Confidence 3455677888888887653321 23456777776643 36889999999999875311100000 0001223334
Q ss_pred HhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHH
Q 004389 541 TSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKK 618 (757)
Q Consensus 541 ~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l-~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~ 618 (757)
...+.++. .++..|+.++.+++..........+ ..++..+..++..+ +.+.+.....+++.++..-..+....
T Consensus 341 ~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nl~~~~~~~~~~~ 415 (529)
T 3tpo_A 341 PSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-----DFKTQKAAAWAITNYTSGGTVEQIVY 415 (529)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-----CHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44455543 5999999999999864332211111 12344444445432 36778888889998887655444332
Q ss_pred HHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC---CCcchHHHHHH--HHHHHHHHHHhcCCCHH
Q 004389 619 ALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQR--LWPIFKAIFDIRAWDMR 693 (757)
Q Consensus 619 ~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~--~~~~l~~~l~~~~~~~~ 693 (757)
.... ..+..|-+++... ..+.+...++.|..+++..+ ..+.+...+++ .+..+..+. . ..+.+
T Consensus 416 l~~~---g~i~~L~~LL~~~-------d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~-~~n~~ 483 (529)
T 3tpo_A 416 LVHC---GIIEPLMNLLSAK-------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-R-HENES 483 (529)
T ss_dssp HHHT---TCHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGG-G-CSSHH
T ss_pred HHHC---cCHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHH-c-CCCHH
Confidence 2221 2333333444321 22334456666666655322 22223222222 344444432 2 25789
Q ss_pred HHHHHHHHHHHHHHH
Q 004389 694 TMESLCRACKYAVRT 708 (757)
Q Consensus 694 v~e~~~~~~~~~~~~ 708 (757)
|.+.+..++.+-|..
T Consensus 484 i~~~A~~iie~yf~~ 498 (529)
T 3tpo_A 484 VYKASLNLIEKYFSV 498 (529)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999998876653
No 41
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=96.28 E-value=0.58 Score=54.34 Aligned_cols=289 Identities=9% Similarity=0.044 Sum_probs=139.3
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhc---ChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHH--
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQH---TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR-- 81 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~---s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~-- 81 (757)
+...++.| .+++...|+.|-+.|..... ..++|.....+|.+ .+..+|..|+.+|.+-.... +.+.
T Consensus 117 i~~lv~~L-~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~--~d~~vr~~A~~~L~~L~~~~------~~~~~i 187 (780)
T 2z6g_A 117 HPTNVQRL-AEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND--EDQVVVNKAAVMVHQLSKKE------ASRHAI 187 (780)
T ss_dssp ----------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHTSH------HHHHHH
T ss_pred HHHHHHHh-cCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhCCC------hhHHHH
Confidence 45666666 44566667666666553221 26678888888874 57789999999998865531 1221
Q ss_pred ----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-cccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhc
Q 004389 82 ----GLQDSLNTLLKKFHKGPPKVRTQISIAVAALAVHISA-EDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV 155 (757)
Q Consensus 82 ----~lr~~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~-~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~ 155 (757)
..-..|+..|.. .....++...+.+|..++..... ..-.+.+.++.|++.+.+.. ......+..|..|...-
T Consensus 188 ~~~~~~i~~Lv~~L~~--~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~ 265 (780)
T 2z6g_A 188 MRSPQMVSAIVRTMQN--TNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265 (780)
T ss_dssp TTCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HhccChHHHHHHHHcC--CCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 233334444443 12567888888888887643210 00000026777888776543 22345566666665432
Q ss_pred ccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCc
Q 004389 156 FNYKIAARPERRRQFEKELTSQMEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (757)
Q Consensus 156 ~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~ 233 (757)
. ..|..+.+ ..++..+...+.++ .+...++.|+..|..-.. -....+.....+..+...|.+.
T Consensus 266 ~--------~~~~~v~~------~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~-e~~~~i~~~~~i~~Lv~lL~~~ 330 (780)
T 2z6g_A 266 E--------GAKMAVRL------AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILASGGPQALVNIMRTY 330 (780)
T ss_dssp T--------THHHHHHH------TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCH-HHHHHHHTTTHHHHHHHHHTTC
T ss_pred h--------hhHHHHHH------cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCCHHHHHHHHhcC
Confidence 1 11111111 12333444444432 567778888888864100 0000112234455555555543
Q ss_pred ---chHHHHHHHHHHHhhhhccCCCCCCCCchhHHH-HHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhhHHHHHHHc
Q 004389 234 ---ILSEASVNVISELIHYSAAGSSGGATVNMPLIQ-VIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGDSYVELIAT 309 (757)
Q Consensus 234 ---~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~-~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~i~~ 309 (757)
.....++.++..+..... ....++. ..++.++.+ + .+.+.+..+..+..+..++.....
T Consensus 331 ~~~~~~~~a~~aL~~Ls~~~~--------~~~~i~~~g~l~~Ll~l---L--~~~~~~~~~~a~~~L~~L~~~~~~---- 393 (780)
T 2z6g_A 331 TYEKLLWTTSRVLKVLSVCSS--------NKPAIVEAGGMQALGLH---L--TDPSQRLVQNCLWTLRNLSDAATK---- 393 (780)
T ss_dssp CCHHHHHHHHHHHHHHHTSTT--------HHHHHHHTTHHHHHGGG---T--TCSCHHHHHHHHHHHHHHHTTCTT----
T ss_pred CHHHHHHHHHHHHHHhhcChH--------HHHHHHHhchHHHHHHH---H--cCCchHHHHHHHHHHHHHhccchh----
Confidence 234456666666553210 1111221 122332222 1 123445555555555554422110
Q ss_pred CCchhHHHHHHHhcccccCccchhhhhHHH
Q 004389 310 GSDESMLIVHALLEVASHPEYDIASMTFNF 339 (757)
Q Consensus 310 ~~~~~~~~l~~ll~~~~~~~~~v~~~~l~f 339 (757)
......++..++.+..+++.++...+...
T Consensus 394 -~~~~~~~i~~Lv~lL~~~d~~vr~~A~~a 422 (780)
T 2z6g_A 394 -QEGMEGLLGTLVQLLGSDDINVVTCAAGI 422 (780)
T ss_dssp -CSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred -hhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11234566777777777777776655443
No 42
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.24 E-value=0.5 Score=51.84 Aligned_cols=232 Identities=12% Similarity=0.120 Sum_probs=122.1
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchh-HHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSI-LASVLS 538 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~-l~~~l~ 538 (757)
.+.+-++.++++++.+++.-... ....++.++..+.. .++.++..++.++|.++..-..+.. .. -..+++
T Consensus 244 ~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~al~aL~nl~~~~~~~~~--~i~~~g~l~ 319 (510)
T 3ul1_B 244 NDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA--TELPIVTPALRAIGNIVTGTDEQTQ--KVIDAGALA 319 (510)
T ss_dssp SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTGGG
T ss_pred CCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC--CChhhhhHHHHHHHHhhcCCHHHHH--HHhhccchH
Confidence 44566778888888888653321 12456777776643 3688999999999987531111000 00 011233
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChH
Q 004389 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (757)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e 614 (757)
.+.+.+.+++ .++..|+.++.+++..... .+.. ..++..+..++..+ +.+.+.....+++.++..-..+
T Consensus 320 ~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~--~g~i~~Lv~lL~~~-----~~~v~~~Aa~aL~Nl~~~~~~~ 392 (510)
T 3ul1_B 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN--HGLVPFLVGVLSKA-----DFKTQKEAAWAITNYTSGGTVE 392 (510)
T ss_dssp GCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHh--cCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHccCCHH
Confidence 3444555543 5999999999999854332 2221 12444444555432 4677888888999888775555
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC---CCcchHHHHHH--HHHHHHHHHHhcC
Q 004389 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN---HPEAVADAIQR--LWPIFKAIFDIRA 689 (757)
Q Consensus 615 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~--~~~~l~~~l~~~~ 689 (757)
......+ ...+..|-+++... ..+.+...++.|..+++.-+ ..+.+...+++ .+..++.+. . .
T Consensus 393 ~~~~L~~---~g~i~~L~~LL~~~-------d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq-~-~ 460 (510)
T 3ul1_B 393 QIVYLVH---CGIIEPLMNLLSAK-------DTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQ-R-H 460 (510)
T ss_dssp HHHHHHH---TTCHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGG-G-C
T ss_pred HHHHHHH---CCCHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHH-c-C
Confidence 4432222 12333344444321 22334456666666665432 22233333332 345554432 2 2
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Q 004389 690 WDMRTMESLCRACKYAVRTSKRFMGITIGA 719 (757)
Q Consensus 690 ~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~ 719 (757)
.+.+|.+.+..++.+.|..-.+.-..+.|.
T Consensus 461 ~n~~i~~~A~~iie~yf~~~~~~~~~~~~~ 490 (510)
T 3ul1_B 461 ENESVYKASLNLIEKYFSVEEEEDQNVVPE 490 (510)
T ss_dssp SSHHHHHHHHHHHHHHCC------------
T ss_pred CCHHHHHHHHHHHHHHCCCccccccccCCC
Confidence 578899999998887664333333334443
No 43
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.13 E-value=0.017 Score=67.45 Aligned_cols=250 Identities=16% Similarity=0.167 Sum_probs=159.7
Q ss_pred hhhHHHhhhhhcCh-hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc-cccHHHHHhhcCCCCChH
Q 004389 429 VADVLIDAASVLGG-DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE-AEVMPQVMALLPKLPQQP 506 (757)
Q Consensus 429 ~~d~l~~~~~~l~~-~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~-~~~l~~l~~~l~~l~~~~ 506 (757)
+...+..+|...+. ..+-.++...+...+...++ ..-.-++|+-.++.++...+++.. ...+|.++..+.. ...-
T Consensus 72 a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d--k~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~kw 148 (986)
T 2iw3_A 72 AMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN--KDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVE-TNKW 148 (986)
T ss_dssp HHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHH-CCCH
T ss_pred HHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-ccch
Confidence 44556666644432 11223333333333322232 233457899999999999988754 3457777777632 2256
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCC-chhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhh-hhhcCCHHHHHHHHHHH
Q 004389 507 QLLQTVCLTIGAYSKWFDAASSD-PSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCR-KKLCGYLDGLYNVYRTA 583 (757)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~~~~-~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~-~~l~p~l~~ll~~~~~l 583 (757)
..+..++.+++++.+-- |+. ...+|.+++.+..+|.+.+ .|..+|-.++.++|.-.. ..+.|++|.|+..+.+
T Consensus 149 ~~k~~~l~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~- 224 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAA---KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD- 224 (986)
T ss_dssp HHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHh---HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcC-
Confidence 78889999999987633 221 1479999999999998854 599999999999997553 4688999999988653
Q ss_pred hhCcCCCCCChhhHHHHHHHHHHHHhc-CChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhh
Q 004389 584 VNGEGSLKVSAEDSLHLVEALSMVITE-LPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFR 662 (757)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~-~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 662 (757)
++ .+-|+|-.+.+. +=.+.-.+.+ .++-|++.+ -++. ..+. ..+..+..++.+++++.
T Consensus 225 ----------p~---~~~~~~~~l~~~tfv~~v~~~~l-~~~~p~l~r---~l~~-~~~~---~~r~~~~~~~n~~~lv~ 283 (986)
T 2iw3_A 225 ----------PT---EVPETVHLLGATTFVAEVTPATL-SIMVPLLSR---GLNE-RETG---IKRKSAVIIDNMCKLVE 283 (986)
T ss_dssp ----------TT---HHHHHHHHHTTCCCCSCCCHHHH-HHHHHHHHH---HHTS-SSHH---HHHHHHHHHHHHHTTCC
T ss_pred ----------hh---hhHHHHHHhhcCeeEeeecchhH-HHHHHHHHh---hhcc-Ccch---hheeeEEEEcchhhhcC
Confidence 11 233443332222 1112223444 456676543 3332 1111 12344567788888865
Q ss_pred hcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 004389 663 YVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTSK 710 (757)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~ 710 (757)
.|..+.+++..++|-+..+.+. .++|+++|-+-+++..+.+.-+
T Consensus 284 ---~~~~~~~f~~~l~p~~~~~~~~-~~~pe~r~~~~~a~~~l~~~~~ 327 (986)
T 2iw3_A 284 ---DPQVIAPFLGKLLPGLKSNFAT-IADPEAREVTLRALKTLRRVGN 327 (986)
T ss_dssp ---CHHHHHHHHTTTHHHHHHHTTT-CCSHHHHHHHHHHHHHHHHHHT
T ss_pred ---CHHHHhhhhhhhhhHHHHHhhc-cCCHHHHHHHHHHHHHHHHhhc
Confidence 5777889999999999887765 4689999999888888877644
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.10 E-value=0.08 Score=59.78 Aligned_cols=150 Identities=10% Similarity=0.082 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHh
Q 004389 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFD 524 (757)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~ 524 (757)
.+-...+.+..-+. +++...+-.||.+++.+... +-....++.+.+.+.+-..+|.||++|+.++.++..
T Consensus 108 ~~~L~iN~l~kDl~-----~~n~~ir~lALr~L~~i~~~--e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~--- 177 (621)
T 2vgl_A 108 LIRLINNAIKNDLA-----SRNPTFMGLALHCIANVGSR--EMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYR--- 177 (621)
T ss_dssp HHHHHHHHHHHHHH-----SCCHHHHHHHHHHHHHHCCH--HHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcC-----CCCHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH---
Confidence 33334555554442 23344466788888877542 111223344444442223489999999999988876
Q ss_pred hCCCCchhHH--HHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCC-------CC-CC
Q 004389 525 AASSDPSILA--SVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGS-------LK-VS 593 (757)
Q Consensus 525 ~~~~~~~~l~--~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~-------~~-l~ 593 (757)
.+|+ .++ ..++.+.+.+.+++ .|...|..++..+|...+..+.++++.+++.+.+++..++- .. .+
T Consensus 178 ~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 178 TSPD---LVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp HCGG---GCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred hChh---hcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 3454 333 45555556665543 49999999999999887777778888888888887653210 00 03
Q ss_pred hhhHHHHHHHHHHH
Q 004389 594 AEDSLHLVEALSMV 607 (757)
Q Consensus 594 ~~~~~~l~eai~~v 607 (757)
+--+..+++.++.+
T Consensus 255 ~w~qi~il~ll~~~ 268 (621)
T 2vgl_A 255 PWLSVKLLRLLQCY 268 (621)
T ss_dssp HHHHHHHHHHGGGS
T ss_pred chHHHHHHHHHHHh
Confidence 45677777777654
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.07 E-value=0.26 Score=55.36 Aligned_cols=129 Identities=11% Similarity=0.113 Sum_probs=80.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CCC-ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KLP-QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l~-~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~ 541 (757)
+.+...+..+..++..+++.-+ +.+.-+++.+. .+. ++|.+|..++.++|.+. .|+ ..+.+++.+.
T Consensus 60 s~~~~~Krl~yl~l~~~~~~~~----e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~-----~~~---~~~~l~~~l~ 127 (591)
T 2vgl_B 60 TDNLELKKLVYLYLMNYAKSQP----DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR-----VDK---ITEYLCEPLR 127 (591)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSH----HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC-----SGG---GHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccCc----hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC-----hHH---HHHHHHHHHH
Confidence 3455656666666666655421 22222222222 232 47899999999999875 343 6777777787
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcC
Q 004389 542 SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITEL 611 (757)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~ 611 (757)
+++.++. .|+..|+.|+.++++...+.+ +. +.+++.+..++..+ +...+...+.+++.+...-
T Consensus 128 ~~L~d~~~~VRk~A~~al~~i~~~~p~~~-~~-~~~~~~l~~lL~d~-----d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 128 KCLKDEDPYVRKTAAVCVAKLHDINAQMV-ED-QGFLDSLRDLIADS-----NPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHHHSSCCCH-HH-HHHHHHHHHTTSCS-----CHHHHHHHHHHHHHHTTSC
T ss_pred HHcCCCChHHHHHHHHHHHHHHhhChhhc-cc-ccHHHHHHHHhCCC-----ChhHHHHHHHHHHHHHhhC
Confidence 8887654 599999999999987543322 21 35677777777532 3556677777777765543
No 46
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.02 E-value=0.41 Score=56.06 Aligned_cols=234 Identities=10% Similarity=0.141 Sum_probs=155.3
Q ss_pred hHHHHHHHHhhcccCcc--ccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCC
Q 004389 471 EAALFCIRAISTYVSVV--EAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMST 546 (757)
Q Consensus 471 Ea~l~~l~~ia~~~~~~--~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~ 546 (757)
|+++.++.++++..... ...++-.+++.+. .+ .....||.++-..+..+..-+ +|. -+..+++.++..+..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~--~~~---a~~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAV--NPV---AIKALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS--CGG---GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhC--CHH---HHHHHHHHHHHHhcc
Confidence 99999999999776542 2223222222221 12 224678888888777666544 343 457777777777744
Q ss_pred Ch--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 004389 547 SE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC 624 (757)
Q Consensus 547 ~~--~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~ 624 (757)
.. .....|...+.++++.++..+.-.++.++-.+.+..- ....+......+++-.++..+++.+ +
T Consensus 145 ~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----d~k~~v~~~~~~~~~~~~~~~~n~d--------~ 211 (986)
T 2iw3_A 145 TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW-----DTKKEVKAAATAAMTKATETVDNKD--------I 211 (986)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT-----CSSHHHHHHHHHHHHHHGGGCCCTT--------T
T ss_pred ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc-----cCcHHHHHHHHHHHHHHHhcCCCcc--------h
Confidence 32 3788889999999999888888889999888877654 2456777766667666666666555 3
Q ss_pred hhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 004389 625 LPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY 704 (757)
Q Consensus 625 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~ 704 (757)
.|.+..|-+++..+. .+..++..++.- -++. +.-.|.+.-+.|+|..-|.. .+..+...++-.+..
T Consensus 212 ~~~~~~~~~~~~~p~---------~~~~~~~~l~~~-tfv~--~v~~~~l~~~~p~l~r~l~~--~~~~~~r~~~~~~~n 277 (986)
T 2iw3_A 212 ERFIPSLIQCIADPT---------EVPETVHLLGAT-TFVA--EVTPATLSIMVPLLSRGLNE--RETGIKRKSAVIIDN 277 (986)
T ss_dssp GGGHHHHHHHHHCTT---------HHHHHHHHHTTC-CCCS--CCCHHHHHHHHHHHHHHHTS--SSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcChh---------hhHHHHHHhhcC-eeEe--eecchhHHHHHHHHHhhhcc--CcchhheeeEEEEcc
Confidence 455566666776432 344455555421 1111 22245667778999888854 456677788888888
Q ss_pred HHHHh--hhhhhhhHHHHHHHHHHHHhhcCCcch
Q 004389 705 AVRTS--KRFMGITIGAILEEIQGLYQQHQQPCF 736 (757)
Q Consensus 705 ~~~~~--~~~~~p~l~~~~~~l~~~~~~~~~~~~ 736 (757)
|.+-. .....||+|.+++.+...++....|..
T Consensus 278 ~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 278 MCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEA 311 (986)
T ss_dssp HHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHH
T ss_pred hhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHH
Confidence 87754 457889999999999988887666654
No 47
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.01 E-value=0.11 Score=50.70 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=127.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.+...+..++.+++.++..-... +...++.+++.+.. .++.++..++++++.++..-..+... -.-..+++.
T Consensus 14 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~ 90 (252)
T 4hxt_A 14 TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKA-IVDAGGVEV 90 (252)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHH-HHHCCCHHH
Confidence 34566778888888887664321 12446667766643 35899999999999887421110000 001124555
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHH---hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHH
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVD 615 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~---~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~ 615 (757)
+.+.+.++. .++..|+.++.+++.. .+..+.. ...+..+.+++..+ +.+.+.....+++.+...- ++.
T Consensus 91 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~-----~~~~~~~a~~~L~~l~~~~-~~~ 162 (252)
T 4hxt_A 91 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTST-----DSEVQKEAARALANIASGP-DEA 162 (252)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCC-HHH
Confidence 556565543 5999999999999953 2233321 12444455555432 3667888888888876542 222
Q ss_pred HHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHH
Q 004389 616 AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRT 694 (757)
Q Consensus 616 ~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v 694 (757)
...... ...+..+.+++... .......++..++.+... .++....+. ...+|.+..++.. .++++
T Consensus 163 ~~~~~~---~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~--~~~~v 228 (252)
T 4hxt_A 163 IKAIVD---AGGVEVLVKLLTST-------DSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTS--TDSEV 228 (252)
T ss_dssp HHHHHH---TTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGC--SCHHH
T ss_pred HHHHHH---CcCHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCC--CcHHH
Confidence 222221 33444555555421 112233455556655431 122222222 3467777777754 57899
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 004389 695 MESLCRACKYAVRTSKRFM 713 (757)
Q Consensus 695 ~e~~~~~~~~~~~~~~~~~ 713 (757)
++.++.++..+...-+...
T Consensus 229 ~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 229 QKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp HHHHHHHHHHHHHTCBCCC
T ss_pred HHHHHHHHHHHHcCCCccc
Confidence 9999999999877554433
No 48
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.94 E-value=0.072 Score=64.46 Aligned_cols=211 Identities=9% Similarity=0.061 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccC-----CCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Q 004389 504 QQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMS-----TSE-DTAAAAALAFRHICDDCRKKLCGYLDGLY 577 (757)
Q Consensus 504 ~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~-----~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll 577 (757)
.+..-+.+++.++|..++-+....+ ..+++.+++++..... ++. .++..+++++.++++-.+.+ ..+++.++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e-~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTE-KRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFLRTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHH-HHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhh-HHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 3678899999999988764321100 1268888888765221 122 25556888888888765543 24667777
Q ss_pred HHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH----HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHH
Q 004389 578 NVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK----KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVH 653 (757)
Q Consensus 578 ~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~----~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 653 (757)
+.+.+.+.. -+...+.....++..++...+.. .. ..+..++.++++.+.+++.... .......
T Consensus 543 ~~ll~~l~~-----~~~~V~~~A~~al~~l~~~~~~~-l~~~~~~~~~p~~~~il~~l~~~~~~~~-------~~~~~~~ 609 (1049)
T 3m1i_C 543 LKLFEFMHE-----THEGVQDMACDTFIKIVQKCKYH-FVIQQPRESEPFIQTIIRDIQKTTADLQ-------PQQVHTF 609 (1049)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHHHHTHH-HHSCCTTCSSCHHHHHHHTHHHHHTTSC-------HHHHHHH
T ss_pred HHHHHHhcC-----CCHHHHHHHHHHHHHHHHHHHHH-hhcccCCCCCcHHHHHHHHHHHHHHhCC-------HHHHHHH
Confidence 776665542 13567777788888777654311 11 0001345556666666665321 1234456
Q ss_pred HHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH----hcC------CCHHH-H--HHHHHHHHHHHHHhhhhhhhhHHHH
Q 004389 654 IDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFD----IRA------WDMRT-M--ESLCRACKYAVRTSKRFMGITIGAI 720 (757)
Q Consensus 654 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~------~~~~v-~--e~~~~~~~~~~~~~~~~~~p~l~~~ 720 (757)
++.++.++...+.++...++++.+++.+..-+. ... .+++. . -..+.++..+.+.+|+.+.|+++.+
T Consensus 610 ~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i 689 (1049)
T 3m1i_C 610 YKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQLGHI 689 (1049)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 788888888765334456667776665433322 111 12322 2 2446678888899999999999887
Q ss_pred HHHHHHHHh
Q 004389 721 LEEIQGLYQ 729 (757)
Q Consensus 721 ~~~l~~~~~ 729 (757)
+..++..|+
T Consensus 690 ~~~~l~~~~ 698 (1049)
T 3m1i_C 690 YYNMLQLYR 698 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766655554
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=95.82 E-value=1.1 Score=48.96 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=74.5
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccH-HHHHhhcCCC--CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVEAEVM-PQVMALLPKL--PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l-~~l~~~l~~l--~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~ 541 (757)
.+..-++.++.+++.++..-.......+ ...++.+..+ ..++.++..++++++.++..-..+... -.-..+++.+.
T Consensus 286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~-v~~~g~i~~Lv 364 (510)
T 3ul1_B 286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ-VVNHGLVPFLV 364 (510)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTHHHHHH
T ss_pred CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHH-HHhcCCHHHHH
Confidence 4566678888888887654221111111 1123333332 236889999999999886421111000 00012333344
Q ss_pred hccCCC-hHHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 542 SGMSTS-EDTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 542 ~~l~~~-~~v~~~Aa~al~~l~~~~~~~l~p~l--~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..+.++ .+++..|++|+.+++..+...-..++ ...+..+.+++.. -+.+.+..+++++..++..
T Consensus 365 ~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-----~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 365 GVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-----KDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHH
Confidence 444333 25999999999999986543211111 1123334445543 2456677788888777654
No 50
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=95.77 E-value=1.1 Score=45.02 Aligned_cols=237 Identities=15% Similarity=0.103 Sum_probs=129.7
Q ss_pred ccccHHHHHhhcCCC-CC---------hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh-ccCCCh-HHHHHHH
Q 004389 488 EAEVMPQVMALLPKL-PQ---------QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS-GMSTSE-DTAAAAA 555 (757)
Q Consensus 488 ~~~~l~~l~~~l~~l-~~---------~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~-~l~~~~-~v~~~Aa 555 (757)
+.+.++..++.|.+- |. ...-+..++..+..+.+-...-... .-...++.++. .+.++. .++..|+
T Consensus 26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~--~~~G~l~~Lv~~lL~s~~~~vr~~Aa 103 (296)
T 1xqr_A 26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADF--CQLSGMHLLVGRYLEAGAAGLRWRAA 103 (296)
T ss_dssp HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHH--HHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence 345677777776532 21 2346667777777776533311000 00123455555 666654 5999999
Q ss_pred HHHHHHHHH---hhhhhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHH
Q 004389 556 LAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTP 630 (757)
Q Consensus 556 ~al~~l~~~---~~~~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~ 630 (757)
.++.+++.+ ++..+. .-++.|+..+.. . -+...+...+.+++.++..-++ ....... ...+..
T Consensus 104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~---~-----~~~~v~~~A~~ALsnl~~~~~~-~~~~~~~---~ggi~~ 171 (296)
T 1xqr_A 104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR---D-----ACDTVRVKALFAISCLVREQEA-GLLQFLR---LDGFSV 171 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH---C-----SCHHHHHHHHHHHHHHHTTCHH-HHHHHHH---TTHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHcc---C-----CCHHHHHHHHHHHHHHHcCCcH-HHHHHHH---CCCHHH
Confidence 999999964 444444 335555554432 1 1356788889999988865432 1111211 133444
Q ss_pred HHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 004389 631 LQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 631 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 709 (757)
|.+++.... .+....+...|+.+... .++....+. ..+.|.+..++.. .+..+++.+..+++.+++..
T Consensus 172 L~~lL~~~d-------~~v~~~A~~aLs~L~~~--~~~~~~~vv~~g~i~~Lv~LL~~--~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 172 LMRAMQQQV-------QKLKVKSAFLLQNLLVG--HPEHKGTLCSMGMVQQLVALVRT--EHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHSSC-------HHHHHHHHHHHHHHHHH--CGGGHHHHHHTTHHHHHHHHHTS--CCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCC-------HHHHHHHHHHHHHHHhC--ChHHHHHHHHcCCHHHHHHHHcC--CChhHHHHHHHHHHHHHhCC
Confidence 455554321 12223344445555443 233333333 3577888888765 47889999999999988753
Q ss_pred hhh---h---hhhHHHHHHHHHHHHhhcC-CcchHhhHHHHHHHhCC
Q 004389 710 KRF---M---GITIGAILEEIQGLYQQHQ-QPCFLYLSSEVIKVVFP 749 (757)
Q Consensus 710 ~~~---~---~p~l~~~~~~l~~~~~~~~-~~~~l~~~~~~i~~f~~ 749 (757)
... + .+.+..+++...+..+.+. +..-...+..+++.|..
T Consensus 241 ~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 241 PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 221 1 1345666666666665433 23333445555555543
No 51
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=95.07 E-value=6.7 Score=45.35 Aligned_cols=253 Identities=12% Similarity=0.070 Sum_probs=133.1
Q ss_pred HcCCCCHHHHHHHHHHHHHHhc----------ChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHH-H
Q 004389 14 LYHHPDDAVRMQADRWLQDFQH----------TIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR-G 82 (757)
Q Consensus 14 ly~~~d~~~r~~A~~~L~~~q~----------s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~-~ 82 (757)
+..+.|+..|..|-..|..+-. .+++......+|.+ +.+.++|..|+..|++ +... ++.+. .
T Consensus 158 lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~-~~d~~vr~~Aa~aL~~-Ls~~-----~~~~~~i 230 (780)
T 2z6g_A 158 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHN-LSHH-----REGLLAI 230 (780)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH-HHTS-----HHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcC-CCCHHHHHHHHHHHHH-HhCC-----chhHHHH
Confidence 3356789999999888888765 45666666777765 4578999999999998 4332 22222 2
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCCC-chhHHHHHhhhchhhccc
Q 004389 83 LQDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHPE-FVPGFLELLTVLPEEVFN 157 (757)
Q Consensus 83 lr~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~~W~---~~~~~~~l~~~~~~~~~-~~~~~L~~L~~L~ee~~~ 157 (757)
.+...+..|...- .+...++...+.+|..++..... ... +.+.++.+++.+.+... .....+..|..+...
T Consensus 231 ~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~--- 306 (780)
T 2z6g_A 231 FKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG--- 306 (780)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT---
T ss_pred HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcC---
Confidence 3334555555432 24567888888888888764321 110 01267777777765321 223444455444321
Q ss_pred ccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCc--ch
Q 004389 158 YKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE--IL 235 (757)
Q Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~--~~ 235 (757)
.++-|..+.+ ....+.++.++... ........+..++....... -....+.....++.++..+.++ ++
T Consensus 307 -----~~e~~~~i~~--~~~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~--~~~~~i~~~g~l~~Ll~lL~~~~~~~ 376 (780)
T 2z6g_A 307 -----NQESKLIILA--SGGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQRL 376 (780)
T ss_dssp -----CHHHHHHHHT--TTHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTST--THHHHHHHTTHHHHHGGGTTCSCHHH
T ss_pred -----ChHHHHHHHH--cCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhhcCh--HHHHHHHHhchHHHHHHHHcCCchHH
Confidence 1111211111 12233334433321 01123333444444333210 0011223456677788877654 56
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhh
Q 004389 236 SEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (757)
Q Consensus 236 ~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~ 301 (757)
...|+.++..+....... ... ..+++.++.+ + ...|.+.....+..+..++.
T Consensus 377 ~~~a~~~L~~L~~~~~~~-----~~~----~~~i~~Lv~l---L--~~~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 377 VQNCLWTLRNLSDAATKQ-----EGM----EGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHHHHTTCTTC-----SCC----HHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhccchhh-----hhh----hhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHh
Confidence 777888888887543211 011 2233433332 1 13455666667777777654
No 52
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=95.00 E-value=0.24 Score=59.12 Aligned_cols=212 Identities=13% Similarity=0.138 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-----h-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-----E-DTAAAAALAFRHICDDCRKKLCGYLDGLYN 578 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~-----~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~ 578 (757)
+...+.+.|+.+|..+.-+.... ..++++.+++.|++...++ + .++...++.+.+.++=.+.+ ..++.+.++
T Consensus 492 sW~~lea~~~aigaIag~~~~~~-E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L~~vl~ 569 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEED-EKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFLKTVVN 569 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHH-HHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHHHHHHH
T ss_pred CHHHHhHHHHHHHHHHCcCCccc-ccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhC-HHHHHHHHH
Confidence 68899999999999976443110 0148999999998655433 1 13333445566555544433 246677777
Q ss_pred HHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH---HHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHH
Q 004389 579 VYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK---KALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 655 (757)
Q Consensus 579 ~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~---~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 655 (757)
.+...+... ....+.....++..+....+..-.. .-...++.+++..+.++.... .++......+
T Consensus 570 ~L~~~m~~~-----~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l-------~~~~~~~lye 637 (1073)
T 3gjx_A 570 KLFEFMHET-----HDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNNINTIICDL-------QPQQVHTFYE 637 (1073)
T ss_dssp HHHHHTTCC-----STTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTSHHHHHTTC-------CHHHHHHHHH
T ss_pred HHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhc-------CHHHHHHHHH
Confidence 776655421 2345667777777776664321100 000113344444444544332 1334556779
Q ss_pred HHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcC----------CCHHHHHHH---HHHHHHHHHHhhhhhhhhHHHHHH
Q 004389 656 RFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA----------WDMRTMESL---CRACKYAVRTSKRFMGITIGAILE 722 (757)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----------~~~~v~e~~---~~~~~~~~~~~~~~~~p~l~~~~~ 722 (757)
.+|.++..++....-...++.++|....-..... .|++.+..+ +++...+...+|..+.|++.++..
T Consensus 638 av~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~v~~~~g~~f~~~~~~i~~ 717 (1073)
T 3gjx_A 638 AVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVRACKAVGHPFVIQLGRIYL 717 (1073)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHHHHhhcchhHHHHHHHHHH
Confidence 9999999886422234556666655544433321 245434444 444445667889999999999888
Q ss_pred HHHHHHhh
Q 004389 723 EIQGLYQQ 730 (757)
Q Consensus 723 ~l~~~~~~ 730 (757)
.+++.|+.
T Consensus 718 ~~l~~y~~ 725 (1073)
T 3gjx_A 718 DMLNVYKC 725 (1073)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 53
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=94.93 E-value=2.1 Score=42.92 Aligned_cols=213 Identities=12% Similarity=0.099 Sum_probs=108.9
Q ss_pred hhhHHHHHHHHhhcccCccc----cccHHHHHh-hcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc------hhHHHHH
Q 004389 469 PAEAALFCIRAISTYVSVVE----AEVMPQVMA-LLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVL 537 (757)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~~----~~~l~~l~~-~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~------~~l~~~l 537 (757)
.++.++..+..+.+...... ...++.++. .+.. +++.+|..++++||..+. .+|... .-++.++
T Consensus 56 ~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~---~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 56 EREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQ---NVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHT---TCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHh---CCHHHHHHHHHCCCHHHHH
Confidence 34455555555555433111 133666776 5432 479999999999998763 122100 1344444
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHHHHhhhhhcCCH-HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHH
Q 004389 538 SILTSGMSTSEDTAAAAALAFRHICDDCRKKLCGYL-DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDA 616 (757)
Q Consensus 538 ~~l~~~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l-~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~ 616 (757)
..+-. ..+..++..|++||.++|.........+. ...+..+..++..+ +...+....-+++.+... +++..
T Consensus 131 ~LL~~--~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-----d~~v~~~A~~aLs~L~~~-~~~~~ 202 (296)
T 1xqr_A 131 RLLDR--DACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVG-HPEHK 202 (296)
T ss_dssp HHHHH--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHH-CGGGH
T ss_pred HHHcc--CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhC-ChHHH
Confidence 44422 11235999999999999975433211111 12344444455432 467788888899888776 33433
Q ss_pred HHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH---HHHHHHHHHHHHhcC---C
Q 004389 617 KKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI---QRLWPIFKAIFDIRA---W 690 (757)
Q Consensus 617 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~l~~~l~~~~---~ 690 (757)
....+. ..+..|-.++.... ......++..++.+++.. +.....+- ..+...++...+... .
T Consensus 203 ~~vv~~---g~i~~Lv~LL~~~d-------~~v~~~al~aL~~l~~~~--~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~ 270 (296)
T 1xqr_A 203 GTLCSM---GMVQQLVALVRTEH-------SPFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQLLQQHEE 270 (296)
T ss_dssp HHHHHT---THHHHHHHHHTSCC-------STHHHHHHHHHHHHHTTC--HHHHHHHHCGGGCHHHHHHHHHHHHTTCGG
T ss_pred HHHHHc---CCHHHHHHHHcCCC-------hhHHHHHHHHHHHHHhCC--hhHHHHHhccHHHHHHHHHHHHHHccchHH
Confidence 322221 23333444554321 223345566666665541 11111000 012233333333333 2
Q ss_pred CHHHHHHHHHHHHHHH
Q 004389 691 DMRTMESLCRACKYAV 706 (757)
Q Consensus 691 ~~~v~e~~~~~~~~~~ 706 (757)
+.++++.+..++...|
T Consensus 271 ~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 271 YQEELEFCEKLLQTCF 286 (296)
T ss_dssp GHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 4677888777777655
No 54
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.58 E-value=0.17 Score=49.46 Aligned_cols=216 Identities=12% Similarity=0.088 Sum_probs=119.6
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVLS 538 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l-~~~l~ 538 (757)
.+.+....++.+++.+...-.+. +...++.+++.+.. .++.++..++++++.++..-..+.. ... ..+++
T Consensus 24 ~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i~ 99 (252)
T 4db8_A 24 DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 99 (252)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCHHHHH--HHHHcCCHH
Confidence 44566677788875544331111 12446667766643 2589999999999988742111100 011 12556
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhhh---hcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChH
Q 004389 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRKK---LCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (757)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~---l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e 614 (757)
.+.+.+.++. .++..|+.+|.+++...... +.. ...+..+.+++..+ +.+.+...+.+++.+...- ++
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~-~~ 171 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSP-----NEQILQEALWALSNIASGG-NE 171 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCS-----CHHHHHHHHHHHHHHTTSC-HH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH--CCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcCC-hH
Confidence 6666665543 59999999999998653322 221 12445555555432 4567888888888876542 22
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHH-HHHHHHHHHHHhcCCCHH
Q 004389 615 DAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQ-RLWPIFKAIFDIRAWDMR 693 (757)
Q Consensus 615 ~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~ 693 (757)
....... ...+..+.+++... .......++..++.+... .++....+.+ ..+|.+..++.. .+++
T Consensus 172 ~~~~~~~---~~~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~--~~~~ 237 (252)
T 4db8_A 172 QIQAVID---AGALPALVQLLSSP-------NEQILQEALWALSNIASG--GNEQKQAVKEAGALEKLEQLQSH--ENEK 237 (252)
T ss_dssp HHHHHHH---TTCHHHHHHGGGCS-------SHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHTTTTC--SSSH
T ss_pred HHHHHHH---CCCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCcHHHHHHHhCC--CCHH
Confidence 2222111 23444455555422 112233455566655431 1222223333 367777766654 5789
Q ss_pred HHHHHHHHHHHHH
Q 004389 694 TMESLCRACKYAV 706 (757)
Q Consensus 694 v~e~~~~~~~~~~ 706 (757)
+++.++.++..+.
T Consensus 238 v~~~A~~~L~~l~ 250 (252)
T 4db8_A 238 IQKEAQEALEKLQ 250 (252)
T ss_dssp HHHTHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999998887653
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.44 E-value=0.43 Score=46.84 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=87.3
Q ss_pred CccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHHH-HHHHHHHHHhhccCCCCCCCCChhhhHHHH
Q 004389 328 PEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRSA-YESLVSLVSFRVQYPQDYQDLSLEDLKEFK 406 (757)
Q Consensus 328 ~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ll~~l~~k~~~p~d~~~~~~d~~~~f~ 406 (757)
.+..+...++++...+.+.+... .|. +.++ ...+++.+++|+.-+. +
T Consensus 99 ~N~~v~~~~L~~L~~l~~~l~~~-~y~------------------~~~~ea~~~lP~LveKlGd~k----------~--- 146 (266)
T 2of3_A 99 TNPAALIKVLELCKVIVELIRDT-ETP------------------MSQEEVSAFVPYLLLKTGEAK----------D--- 146 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT-TCC------------------CCHHHHHHHHHHHHHGGGCSS----------H---
T ss_pred CCHHHHHHHHHHHHHHHHHHHhc-ccc------------------chHHHHHHHHHHHHHHhCCCh----------H---
Confidence 45667788888877776665432 121 1111 2345666778774332 2
Q ss_pred HhhhcccccCCcchhhhhhhhhhhhHHHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCc
Q 004389 407 HTRYDLACCSSSTLTESVMLIAVADVLIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSV 486 (757)
Q Consensus 407 ~~R~~~~~~~~s~~~~~~~~~~~~d~l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~ 486 (757)
.+|.. +.+++..++.+.+++.+..++.+.+. +.+|+.++.++..+.++-+....
T Consensus 147 ~vR~~-----------------~r~il~~l~~v~~~~~v~~~l~~g~k---------sKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 147 NMRTS-----------------VRDIVNVLSDVVGPLKMTPMLLDALK---------SKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHGGG---------CSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHH-----------------HHHHHHHHHHHCCHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHHHHhcCC
Confidence 24555 66777777777787767666554331 46799999999999988665433
Q ss_pred cccccH---HHHHhhcCCCCChHHHHHHHHHHHHhhHHHH
Q 004389 487 VEAEVM---PQVMALLPKLPQQPQLLQTVCLTIGAYSKWF 523 (757)
Q Consensus 487 ~~~~~l---~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l 523 (757)
.....+ +.+...+.+ .++.||.+|+.++.....+.
T Consensus 201 ~~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 201 SPLKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GGGGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHH
T ss_pred CccccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHh
Confidence 333445 555555543 47999999999998766554
No 56
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=94.22 E-value=1.4 Score=41.49 Aligned_cols=173 Identities=11% Similarity=0.102 Sum_probs=102.7
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~ 543 (757)
+.+|..+..++.+++.+++ .+.++.++..+.+ .++.+|..++..+|.+.. ++ .++.++ +.
T Consensus 30 ~~~~~vR~~A~~~L~~~~~------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~~-----~~---~~~~L~----~~ 89 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALKD--EDAWVRRAAADALGQIGD-----ER---AVEPLI----KA 89 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCC------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHCC-----GG---GHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhCC-----HH---HHHHHH----HH
Confidence 4568888888888887765 2446777776653 479999999999998752 22 444444 44
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004389 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 622 (757)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~ 622 (757)
+.+++ .|+..|+.++.++.. . ..+..+..++.. -+...+...+++++.+- ..+
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~---~-------~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~~----~~~------- 143 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGD---E-------RAVEPLIKALKD-----EDWFVRIAAAFALGEIG----DER------- 143 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC---G-------GGHHHHHHHTTC-----SSHHHHHHHHHHHHHHC----CGG-------
T ss_pred HcCCCHHHHHHHHHHHHHhCc---H-------HHHHHHHHHHhC-----CCHHHHHHHHHHHHHcC----CHH-------
Confidence 55543 499999999887742 1 122333444443 24677888888888762 121
Q ss_pred hhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004389 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (757)
Q Consensus 623 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~ 702 (757)
.+..|.+.++.. .......++..++.+ +. ....+.+..++.. .++.|++.+..++
T Consensus 144 ----~~~~L~~~l~d~-------~~~vr~~a~~aL~~~----~~--------~~~~~~L~~~l~d--~~~~vr~~A~~aL 198 (211)
T 3ltm_A 144 ----AVEPLIKALKDE-------DGWVRQSAADALGEI----GG--------ERVRAAMEKLAET--GTGFARKVAVNYL 198 (211)
T ss_dssp ----GHHHHHHHTTCS-------SHHHHHHHHHHHHHH----CS--------HHHHHHHHHHHHH--CCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHcCC-------CHHHHHHHHHHHHHh----Cc--------hhHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 122233333211 112223344555544 21 3456666666664 5788999988888
Q ss_pred HHHHH
Q 004389 703 KYAVR 707 (757)
Q Consensus 703 ~~~~~ 707 (757)
+.+-.
T Consensus 199 ~~~~~ 203 (211)
T 3ltm_A 199 ETHKS 203 (211)
T ss_dssp HC---
T ss_pred HhcCC
Confidence 77544
No 57
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=93.98 E-value=1.3 Score=42.86 Aligned_cols=221 Identities=15% Similarity=0.106 Sum_probs=129.9
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcC-h---------hHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCC
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHT-I---------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELP 76 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s-~---------~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~ 76 (757)
|...+..+ .+++++.|.+|-..|..+-.. + ++......+|.+ .+..++..|+..|.+....+
T Consensus 4 i~~L~~~L-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~----- 75 (252)
T 4hxt_A 4 VEKLVKLL-TSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGP----- 75 (252)
T ss_dssp HHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC-----
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCC-----
Confidence 44445555 567899999999999888654 3 355666777765 45889999999999876532
Q ss_pred hhhHH-HHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccccCC---ccchHHHHHhcCCCC-CchhHHHHHhhh
Q 004389 77 SEAVR-GLQDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISAEDWGG---GGIVNWLRDEMNSHP-EFVPGFLELLTV 150 (757)
Q Consensus 77 ~e~~~-~lr~~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~~~W~~---~~~~~~l~~~~~~~~-~~~~~~L~~L~~ 150 (757)
++.+. .++...+..+... ..+...++...+.+|+.++..... .... .+.++.+++.+.+.. ......+..|..
T Consensus 76 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 76 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33333 3333455555543 235678899999999888743221 0100 025777777776533 233456666666
Q ss_pred chhhcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHh
Q 004389 151 LPEEVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHI--NELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALS 228 (757)
Q Consensus 151 L~ee~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~--~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~ 228 (757)
+... .+..+..+.+ ..+++.+...+.+ ++++..++.++..-..... -....+.....++.+.+
T Consensus 155 l~~~--------~~~~~~~~~~------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ 219 (252)
T 4hxt_A 155 IASG--------PDEAIKAIVD------AGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQK 219 (252)
T ss_dssp HTTS--------CHHHHHHHHH------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHH
T ss_pred HHcC--------CHHHHHHHHH------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHH
Confidence 6442 1222222111 1233444444444 3677888888877654210 00001234566777777
Q ss_pred ccCC--cchHHHHHHHHHHHhhhhc
Q 004389 229 SLHS--EILSEASVNVISELIHYSA 251 (757)
Q Consensus 229 ~L~~--~~~~~~a~~~l~~ii~~~~ 251 (757)
.+.+ ++++..|+.++..+.....
T Consensus 220 ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 220 LLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 7764 4678889999999887554
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=93.96 E-value=5.2 Score=39.35 Aligned_cols=213 Identities=12% Similarity=0.042 Sum_probs=120.5
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHHH
Q 004389 7 VKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQDS 86 (757)
Q Consensus 7 v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~~ 86 (757)
+...+..| .++|+..|..|-..|.++. .+++......+|.+ .+..+|..|+..|.+.-. +++....+-..
T Consensus 25 i~~L~~~L-~~~~~~vr~~A~~~L~~~~-~~~~~~~L~~~l~d--~~~~vR~~A~~aL~~l~~------~~~~~~~l~~~ 94 (280)
T 1oyz_A 25 DDELFRLL-DDHNSLKRISSARVLQLRG-GQDAVRLAIEFCSD--KNYIRRDIGAFILGQIKI------CKKCEDNVFNI 94 (280)
T ss_dssp HHHHHHHT-TCSSHHHHHHHHHHHHHHC-CHHHHHHHHHHHTC--SSHHHHHHHHHHHHHSCC------CTTTHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHccC-CchHHHHHHHHHcC--CCHHHHHHHHHHHHHhcc------ccccchHHHHH
Confidence 34445555 6789999999999998886 78888888999975 567899999998865321 12222222222
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhh-cccc---cc-
Q 004389 87 LNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEE-VFNY---KI- 160 (757)
Q Consensus 87 Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee-~~~~---~~- 160 (757)
|.+.+.. .....||...+.+|+.+....+. ..+. .++.+...++... .........|..+..+ .... .+
T Consensus 95 L~~~~~~--d~~~~vr~~a~~aL~~l~~~~~~-~~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~ 169 (280)
T 1oyz_A 95 LNNMALN--DKSACVRATAIESTAQRCKKNPI-YSPK--IVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLK 169 (280)
T ss_dssp HHHHHHH--CSCHHHHHHHHHHHHHHHHHCGG-GHHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC---CCHHHHHHHHT
T ss_pred HHHHHhc--CCCHHHHHHHHHHHHHHhccCCc-ccHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 2222222 24678999999999888754321 1223 5666666665422 1122333344333221 0000 00
Q ss_pred cCChHHHHHHHHHHHHh---HHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCcch
Q 004389 161 AARPERRRQFEKELTSQ---MEVALSTLTACLHIN--ELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSEIL 235 (757)
Q Consensus 161 ~~~~~~r~~l~~~l~~~---~~~vl~~l~~~l~~~--~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~~~ 235 (757)
.-...-|......+... .+.+++.+...+.++ .++..++.++...- ....++.+...+.++++
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~------------~~~~~~~L~~~l~d~~v 237 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK------------DKRVLSVLCDELKKNTV 237 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT------------CGGGHHHHHHHHTSSSC
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC------------CHhhHHHHHHHhcCccH
Confidence 00122333333333322 455666666666553 56777777766421 13456666777777778
Q ss_pred HHHHHHHHHHH
Q 004389 236 SEASVNVISEL 246 (757)
Q Consensus 236 ~~~a~~~l~~i 246 (757)
+..|..++..+
T Consensus 238 r~~a~~aL~~i 248 (280)
T 1oyz_A 238 YDDIIEAAGEL 248 (280)
T ss_dssp CHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 87777777665
No 59
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=93.92 E-value=2.3 Score=46.65 Aligned_cols=218 Identities=12% Similarity=0.133 Sum_probs=122.8
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCC---ChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLP---QQPQLLQTVCLTIGAYSKWFDAASSDPSILASV 536 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~---~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~ 536 (757)
.+-.-+|.++++++.++..-+.. ....++.++..+..-. ....+...++++++.++..-...+. ......+
T Consensus 174 ~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~-~~~~~~~ 252 (529)
T 3tpo_A 174 PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPP-LDAVEQI 252 (529)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhh-HHHHhhH
Confidence 44566799999999998643221 1234677777664321 1345677788888776542222121 1245678
Q ss_pred HHHHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 537 LSILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 537 l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
++.|.+.+.++. .++..|+.++..++..... .+. ..++.++. ++.. -+...+...+.+++.++..
T Consensus 253 lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~----lL~~-----~~~~v~~~a~~aL~nl~~~ 323 (529)
T 3tpo_A 253 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK----LLGA-----TELPIVTPALRAIGNIVTG 323 (529)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH----HHTC-----SCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH----HhcC-----CChhHHHHHHHHHHHHHcc
Confidence 888888776653 5999999999999864322 222 33444444 3433 2356778888888887654
Q ss_pred CChHHHHHHHH-HhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhc
Q 004389 611 LPQVDAKKALE-MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIR 688 (757)
Q Consensus 611 ~~~e~~~~~l~-~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~ 688 (757)
- ++.....+. ..+.+ |.+++.... ......+...++.+... .++....+. ..++|.+..++..
T Consensus 324 ~-~~~~~~i~~~g~l~~----L~~LL~~~~-------~~i~~~a~~aL~nl~~~--~~~~~~~v~~~g~i~~Lv~lL~~- 388 (529)
T 3tpo_A 324 T-DEQTQKVIDAGALAV----FPSLLTNPK-------TNIQKEATWTMSNITAG--RQDQIQQVVNHGLVPFLVGVLSK- 388 (529)
T ss_dssp C-HHHHHHHHHTTGGGG----HHHHTTCSS-------HHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHHHS-
T ss_pred c-hHHHHHHhhcccHHH----HHHHHcCCC-------HHHHHHHHHHHHHHhcc--cHHHHHHHHhcCcHHHHHHHhcC-
Confidence 2 222222222 22333 334443211 11112233444444321 112222233 3478888888865
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 004389 689 AWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 689 ~~~~~v~e~~~~~~~~~~~~ 708 (757)
.+.++...++.++..+...
T Consensus 389 -~~~~v~~~A~~aL~nl~~~ 407 (529)
T 3tpo_A 389 -ADFKTQKAAAWAITNYTSG 407 (529)
T ss_dssp -SCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHcC
Confidence 5788999999998887653
No 60
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.28 E-value=13 Score=41.75 Aligned_cols=132 Identities=14% Similarity=0.120 Sum_probs=80.9
Q ss_pred cchhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 004389 467 WRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (757)
Q Consensus 467 w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~ 541 (757)
...++.++.++..++.. .... ...++.++..+.. .++.++..++++++.++..-.. .. ....+++.+.
T Consensus 197 ~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~-~~---~~~~~i~~Lv 269 (644)
T 2z6h_A 197 EKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATK-QE---GMEGLLGTLV 269 (644)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTT-CC---SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchh-hh---hhhhHHHHHH
Confidence 44567788888878753 2111 1234555554432 3688999999999998764322 11 4457777777
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHHh---hhhhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCC
Q 004389 542 SGMSTSE-DTAAAAALAFRHICDDC---RKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELP 612 (757)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~~---~~~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~ 612 (757)
+.+.++. .++..|+.+|.+++... +..+. .-++.+++.+..- + -..+.+...+.+++.+...-+
T Consensus 270 ~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~---~----~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 270 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA---G----DREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH---T----TCHHHHHHHHHHHHHHTSSST
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHcc---C----CcHHHHHHHHHHHHHHhcCCc
Confidence 7776543 59999999999998632 33332 2244444443321 0 114667888888888865544
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=92.66 E-value=3.5 Score=38.26 Aligned_cols=170 Identities=11% Similarity=0.099 Sum_probs=102.1
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~ 543 (757)
+.+|..+..++.+++.++. .+.++.+++.+. ..++.+|..++..+|.+. .++ .++.++ ..
T Consensus 25 ~~~~~vr~~A~~~L~~~~~------~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~-----~~~---~~~~L~----~~ 84 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGD------ERAVEPLIKALK--DEDAWVRRAAADALGQIG-----DER---AVEPLI----KA 84 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCC------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHC-----CGG---GHHHHH----HH
T ss_pred CCCHHHHHHHHHHHHhcCC------hhHHHHHHHHHc--CCCHHHHHHHHHHHHhhC-----CHH---HHHHHH----HH
Confidence 4678888899999887764 244677777764 347999999999999874 222 344444 44
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHH
Q 004389 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEM 622 (757)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~ 622 (757)
+.+++ .++..|+.++.++.. + ..+..+..++.. -+...|...++++|.+-. .
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~-------~---~~~~~L~~~l~d-----~~~~vr~~a~~aL~~~~~----~-------- 137 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD-------E---RAVEPLIKALKD-----EDWFVRIAAAFALGEIGD----E-------- 137 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC-------G---GGHHHHHHHTTC-----SSHHHHHHHHHHHHHHTC----G--------
T ss_pred HcCCCHHHHHHHHHHHHHhCc-------H---HHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCC----H--------
Confidence 55543 499999999887642 1 122333344433 246778888888887522 1
Q ss_pred hhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 004389 623 LCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRAC 702 (757)
Q Consensus 623 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~ 702 (757)
..+..|.+.+... .......++..++.+ +. ....+.+..++.. .++.|++.+...+
T Consensus 138 ---~~~~~L~~~l~d~-------~~~vr~~A~~aL~~~----~~--------~~~~~~L~~~l~d--~~~~vr~~A~~aL 193 (201)
T 3ltj_A 138 ---RAVEPLIKALKDE-------DGWVRQSAADALGEI----GG--------ERVRAAMEKLAET--GTGFARKVAVNYL 193 (201)
T ss_dssp ---GGHHHHHHHTTCS-------SHHHHHHHHHHHHHH----CS--------HHHHHHHHHHHHH--CCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCC-------CHHHHHHHHHHHHHh----Cc--------hhHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 1222233333321 112233445555544 21 2356666666655 5688988888877
Q ss_pred HH
Q 004389 703 KY 704 (757)
Q Consensus 703 ~~ 704 (757)
++
T Consensus 194 ~~ 195 (201)
T 3ltj_A 194 ET 195 (201)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 62
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.38 E-value=7 Score=41.23 Aligned_cols=196 Identities=10% Similarity=0.057 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTA 583 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l 583 (757)
.+..+.-+..+|.+|..+| |+ +-..+++.++....+.+ .+|..|-+.|-.||.+ .++.-+.+.+.++
T Consensus 41 ~~k~K~LaaQ~I~kffk~F---P~---l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~------~~i~kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHF---PE---LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG------ENLPRVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGC---GG---GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT------TCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhC---hh---hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh------hhhhhHHHHHHHH
Confidence 4666667777776654444 43 55666666666554433 3666666666666644 3455666666666
Q ss_pred hhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhh-------------------------------hHHHHHH
Q 004389 584 VNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCL-------------------------------PVVTPLQ 632 (757)
Q Consensus 584 ~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~-------------------------------~~~~~l~ 632 (757)
+++. +..+...+=.++..++..=|...+...+.++.. -++..+.
T Consensus 109 Lqtd-----d~~E~~~V~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ik 183 (507)
T 3u0r_A 109 LQTD-----DSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESK 183 (507)
T ss_dssp TTCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHH
T ss_pred Hhcc-----chHHHHHHHHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHH
Confidence 6542 234444444554444444221111111111111 1122222
Q ss_pred HHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHh---cC-CCHHHHHHHHHHHHHHHHH
Q 004389 633 EIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDI---RA-WDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~-~~~~v~e~~~~~~~~~~~~ 708 (757)
++++.- . ...+..+-.++++++....+ +-.+++.+++....+. |. .|.+.+++...|+.+++-.
T Consensus 184 K~L~DV-------T----~~EF~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~ 251 (507)
T 3u0r_A 184 KVLEDV-------T----GEEFVLFMKILSGLKSLQTV-SGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPL 251 (507)
T ss_dssp HHTTSC-------C----HHHHHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGG
T ss_pred HHhccc-------c----HHHHHHHHHHHHhcccccCc-hHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 222100 0 11223333333333321111 2246677766655432 33 5889999999999998765
Q ss_pred h--hhhhhhhHHHHHHHHHHHHh
Q 004389 709 S--KRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 709 ~--~~~~~p~l~~~~~~l~~~~~ 729 (757)
+ |.+...|+.-+++.++-.+.
T Consensus 252 FS~~v~StkFv~y~~~kIlP~l~ 274 (507)
T 3u0r_A 252 FSKNVHSTRFVTYFCEQVLPNLG 274 (507)
T ss_dssp CBTTBCCHHHHHHHHHHTGGGTT
T ss_pred hccCCChHHHHHHHHHhhccchh
Confidence 4 34445566555665554444
No 63
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.04 E-value=0.38 Score=45.39 Aligned_cols=138 Identities=15% Similarity=0.160 Sum_probs=84.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhH-HHHH
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSIL-ASVL 537 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l-~~~l 537 (757)
+.++.-++.++.+++.++..-... +...++.+++.+.. .++.++..++++++.++..-..+.. ... ..++
T Consensus 23 s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~i~~~g~i 98 (210)
T 4db6_A 23 SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGAL 98 (210)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTCH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcHHHH--HHHHCCCH
Confidence 356777889999999988553322 12456777776643 3789999999999988631111000 000 1234
Q ss_pred HHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 538 SILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY-LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 538 ~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~-l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
+.+.+.+.+++ .++..|+.++.+++.......... -...+..+.+++..+ +.+.+...+.+++.+...
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASG 168 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcC
Confidence 45555555543 599999999999996433221110 112445555555432 467788888899888765
No 64
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=91.98 E-value=19 Score=40.41 Aligned_cols=256 Identities=12% Similarity=0.068 Sum_probs=134.7
Q ss_pred HHHcCCCCHHHHHHHHHHHHHHhcCh----------hHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHH
Q 004389 12 NALYHHPDDAVRMQADRWLQDFQHTI----------DAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVR 81 (757)
Q Consensus 12 ~~ly~~~d~~~r~~A~~~L~~~q~s~----------~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~ 81 (757)
..+..++|+..|..|-..|..+-..+ ++......+|.+ +.+.+++..|+..|++.... ++.+.
T Consensus 20 v~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~-~~~~~~~~~A~~~L~~Ls~~------~~~~~ 92 (644)
T 2z6h_A 20 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REGLL 92 (644)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHTTS------HHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcC------hhhHH
Confidence 33446779999999999988876533 445555667764 45788999999999964332 22333
Q ss_pred HH-HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccc--ccCCccchHHHHHhcCCCCCc-hhHHHHHhhhchhhcc
Q 004389 82 GL-QDSLNTLLKKFH-KGPPKVRTQISIAVAALAVHISAE--DWGGGGIVNWLRDEMNSHPEF-VPGFLELLTVLPEEVF 156 (757)
Q Consensus 82 ~l-r~~Ll~~l~~~~-~~~~~v~~kL~~~la~l~~~~~~~--~W~~~~~~~~l~~~~~~~~~~-~~~~L~~L~~L~ee~~ 156 (757)
.+ +...+..+...- .+...++...+.+|..++...... ..-+.+.++.+++.+.+.... ....+..|..|...
T Consensus 93 ~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~-- 170 (644)
T 2z6h_A 93 AIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG-- 170 (644)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT--
T ss_pred HHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc--
Confidence 22 223444444432 345678888888998887653210 000012677888877653222 22334455555431
Q ss_pred cccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCC--cc
Q 004389 157 NYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHS--EI 234 (757)
Q Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~--~~ 234 (757)
.++.|..+.+. ...+.++.++... ..+.+...+++++..-.... -....+.....++.+...+.+ ++
T Consensus 171 ------~~~~~~~i~~~--g~v~~Lv~lL~~~-~~~~~~~~a~~~L~nLs~~~--~~~~~l~~~g~l~~L~~ll~~~~~~ 239 (644)
T 2z6h_A 171 ------NQESKLIILAS--GGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDPSQR 239 (644)
T ss_dssp ------CHHHHHHHHHT--THHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTCT--THHHHHHHTTHHHHHHTTTTCSCHH
T ss_pred ------CcHHHHHHHHc--CChHHHHHHHHcC-ChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhcCCHH
Confidence 12222222111 2234444444322 11234455555554432210 000122344567777777765 46
Q ss_pred hHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhh
Q 004389 235 LSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (757)
Q Consensus 235 ~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~ 301 (757)
+...++.+|..+....... .. +..+++.++.+ + ...|.+.....+..+..++.
T Consensus 240 ~~~~a~~~L~nL~~~~~~~------~~---~~~~i~~Lv~l---L--~~~d~~v~~~a~~aL~~L~~ 292 (644)
T 2z6h_A 240 LVQNCLWTLRNLSDAATKQ------EG---MEGLLGTLVQL---L--GSDDINVVTCAAGILSNLTC 292 (644)
T ss_dssp HHHHHHHHHHHHGGGCTTC------CS---CHHHHHHHHHH---T--TCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcchhh------hh---hhhHHHHHHHH---H--cCCCHHHHHHHHHHHHHHHc
Confidence 6778888888886543211 11 12334443332 1 13455666667777776654
No 65
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.77 E-value=1.8 Score=40.35 Aligned_cols=109 Identities=14% Similarity=0.142 Sum_probs=71.2
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~ 543 (757)
+.+|.-+..++.+++.++.. +.++.++..+.. .++.+|..+++.+|++.. ++ .++.+ .+.
T Consensus 56 ~~~~~vr~~a~~~L~~~~~~------~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~~-----~~---~~~~L----~~~ 115 (201)
T 3ltj_A 56 DEDAWVRRAAADALGQIGDE------RAVEPLIKALKD--EDGWVRQSAAVALGQIGD-----ER---AVEPL----IKA 115 (201)
T ss_dssp CSSHHHHHHHHHHHHHHCCG------GGHHHHHHHTTC--SSHHHHHHHHHHHHHHCC-----GG---GHHHH----HHH
T ss_pred CCCHHHHHHHHHHHHhhCCH------HHHHHHHHHHcC--CCHHHHHHHHHHHHHhCc-----HH---HHHHH----HHH
Confidence 35677778888888877532 346667766643 479999999999998642 22 34444 444
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
+.++. .|+..|+.++.++.. +..+..+..++.. -+...+...+++++.+
T Consensus 116 l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d-----~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 116 LKDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKD-----EDGWVRQSAADALGEI 165 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTC-----SSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcC-----CCHHHHHHHHHHHHHh
Confidence 55543 499999999988742 1223344444443 2467788888888876
No 66
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=91.59 E-value=2.2 Score=42.84 Aligned_cols=145 Identities=10% Similarity=0.177 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhc----c--CCcchHH-HHHHHHHHHhhhhccCCCCCCCCch-hHH
Q 004389 194 LKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSS----L--HSEILSE-ASVNVISELIHYSAAGSSGGATVNM-PLI 265 (757)
Q Consensus 194 ~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~----L--~~~~~~~-~a~~~l~~ii~~~~~~~~~~~~~~~-~~~ 265 (757)
+++.+|+-+..|+.-.. .. ......+++.+++. - +.|+.++ ..++++..++++..... .+.. .++
T Consensus 45 vKkeiLkLiet~i~~~~--d~-~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i----~~~vp~Il 117 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSN--DP-QMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHI----TAEIPQIF 117 (321)
T ss_dssp HHHHHHHHHHHHHTTCS--CH-HHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGG----GGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--CH-HHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHh----hhhHHHHH
Confidence 56778888888887421 11 11123334333322 1 2355654 46778888887664221 1122 233
Q ss_pred HHHHHHHHhhHHHhc-ccCCCHHHHHHHHHHHHHHhhHHHHHHHcCC-chhHHHHHHHhcccccCccchhhhhHHHHHHH
Q 004389 266 QVIVPQIMSLKAHLT-DSSKDEEDVKAIARLFADMGDSYVELIATGS-DESMLIVHALLEVASHPEYDIASMTFNFWHSL 343 (757)
Q Consensus 266 ~~l~~~v~~l~~~~~-~~~~d~~~~~~~~~l~~~~~~~~~~~i~~~~-~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l 343 (757)
+.+|..-+ +.+. +-++-+|-..++.+++-++.......+.+=| +.+..+++.++...+|++.+|++.++.-...+
T Consensus 118 ~~VFe~TL---~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~l 194 (321)
T 1w9c_A 118 DAVFECTL---NMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTL 194 (321)
T ss_dssp HHHHHHHH---HHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Confidence 44443222 2222 1234457777888888888776555555534 45778889999999999999999999988777
Q ss_pred HHHHh
Q 004389 344 QVILT 348 (757)
Q Consensus 344 ~~~~~ 348 (757)
.+.+.
T Consensus 195 l~n~~ 199 (321)
T 1w9c_A 195 LQNVA 199 (321)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77664
No 67
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=91.19 E-value=1.5 Score=41.08 Aligned_cols=132 Identities=17% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchh-HHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSI-LASVLS 538 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~-l~~~l~ 538 (757)
.+..-++.++++++.++..-+.. +...++.++..+.. .++.++..++++++.++..-..+-. .. -..+++
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~i~ 141 (210)
T 4db6_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQ--AVIDAGALP 141 (210)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHH--HHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHH--HHHHcCcHH
Confidence 45677889999999888543221 12456777777643 2689999999999998741111000 00 112444
Q ss_pred HHHhccCCCh-HHHHHHHHHHHHHHHHhhh---hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 539 ILTSGMSTSE-DTAAAAALAFRHICDDCRK---KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 539 ~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~---~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
.+.+.+.+++ .++..|+.+|.++|..... .+.. ...+..+.+++..+ +.+.+.....+++.+
T Consensus 142 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~-----~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE--AGALEKLEQLQSHE-----NEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH--TTHHHHHHHGGGCS-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH--CCCHHHHHHHHhCC-----CHHHHHHHHHHHHHH
Confidence 5555555443 5999999999999964322 2221 13455556666532 356677777777654
No 68
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=90.97 E-value=0.42 Score=46.58 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCcchhhHHHHHHHHhhcccCccc-----cccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHH
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVE-----AEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSI 539 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~-----~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~ 539 (757)
.+..-++.++.+++.++..-.... ...++.++..+.. .++.++..++++++.++..-...... -.-..+++.
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~ 142 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQA-VIDAGALPA 142 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHH-HHHTTHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHH-HHHCCCHHH
Confidence 346667888899988886533221 2346667766654 37899999999999986422111000 011135556
Q ss_pred HHhccCCCh-HHHHHHHHHHHHHHHHhh---hhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 540 LTSGMSTSE-DTAAAAALAFRHICDDCR---KKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 540 l~~~l~~~~-~v~~~Aa~al~~l~~~~~---~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
+.+.+.++. .++..|+.+|.+++.... ..+.. ...+..+.+++..+ +.+.+...+.+++.+...
T Consensus 143 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~-----~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSP-----NEQILQEALWALSNIASG 210 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHGGGCS-----SHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHCCC-----CHHHHHHHHHHHHHHhcC
Confidence 666665543 599999999999996432 22221 12334444445432 466788888888887654
No 69
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=86.11 E-value=6.7 Score=38.51 Aligned_cols=117 Identities=9% Similarity=0.077 Sum_probs=74.3
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~ 543 (757)
..++.-+.+++.+++.++...+......++.++..+. ..++.||..++..+|.+.. +. .++.++..
T Consensus 102 d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~--d~~~~vR~~a~~aL~~~~~-----~~---~~~~L~~~---- 167 (280)
T 1oyz_A 102 DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAF--DKSTNVRRATAFAISVIND-----KA---TIPLLINL---- 167 (280)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT--CSCHHHHHHHHHHHHTC--------C---CHHHHHHH----
T ss_pred CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhh--CCCHHHHHHHHHHHHhcCC-----HH---HHHHHHHH----
Confidence 3567778899999998875543222334555555443 2479999999999998764 32 45555443
Q ss_pred cCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 544 MSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 544 l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
+.+++ .|+..|+.++..+. +.-+..+..+...+..+ +...|...+.+++.+
T Consensus 168 l~d~~~~vr~~a~~aL~~~~--------~~~~~~~~~L~~~l~d~-----~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 168 LKDPNGDVRNWAAFAININK--------YDNSDIRDCFVEMLQDK-----NEEVRIEAIIGLSYR 219 (280)
T ss_dssp HTCSSHHHHHHHHHHHHHHT--------CCCHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHhhc--------cCcHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHh
Confidence 44543 49999999998763 12234555555665432 366788888888764
No 70
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=83.49 E-value=50 Score=35.06 Aligned_cols=112 Identities=13% Similarity=0.170 Sum_probs=70.1
Q ss_pred CcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc-hhHHHHHHH
Q 004389 466 EWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-SILASVLSI 539 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~-~~l~~~l~~ 539 (757)
+-.-.+.+..+++.++..-++. +...++.+++.+..- .++.++..++++++..+.. ++.. .....+++.
T Consensus 57 ~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~----~~~~~~i~~g~i~~ 131 (457)
T 1xm9_A 57 NQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST----DELKEELIADALPV 131 (457)
T ss_dssp CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS----SSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC----HHhHHHHHhccHHH
Confidence 3455688899999888742211 134578888887532 3689999999999988754 2211 133466666
Q ss_pred HHhccC--------CC---------hHHHHHHHHHHHHHHHH--hhhhhc---CCHHHHHHHHHH
Q 004389 540 LTSGMS--------TS---------EDTAAAAALAFRHICDD--CRKKLC---GYLDGLYNVYRT 582 (757)
Q Consensus 540 l~~~l~--------~~---------~~v~~~Aa~al~~l~~~--~~~~l~---p~l~~ll~~~~~ 582 (757)
|++.+. .+ ..+...|+.+|.++|.. +++.+. .-++.|+..+..
T Consensus 132 Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~ 196 (457)
T 1xm9_A 132 LADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQN 196 (457)
T ss_dssp HHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHH
T ss_pred HHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHh
Confidence 666661 11 23667999999999964 344444 335556655543
No 71
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.25 E-value=53 Score=35.23 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=81.8
Q ss_pred CcchhhHHHHHHHHhhcccCcc----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHH
Q 004389 466 EWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILT 541 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~ 541 (757)
+....+++..++..++..-... +...++.++..+.. .++.++..++++++.++...... . ....+++.+.
T Consensus 199 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~-~---~~~~~i~~L~ 272 (529)
T 1jdh_A 199 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ-E---GMEGLLGTLV 272 (529)
T ss_dssp CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTTC-S---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChhh-H---HHHhHHHHHH
Confidence 3455677888888777421100 11334555554432 36889999999999988754321 1 3456777777
Q ss_pred hccCCCh-HHHHHHHHHHHHHHHH---hhhhhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCCh
Q 004389 542 SGMSTSE-DTAAAAALAFRHICDD---CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQ 613 (757)
Q Consensus 542 ~~l~~~~-~v~~~Aa~al~~l~~~---~~~~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~ 613 (757)
+.+.+++ .++..|+.++.+++.. .+..+. .-++.+++.+..- .-+.+.+...+.+++.+...-+.
T Consensus 273 ~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~-------~~~~~v~~~a~~~L~nl~~~~~~ 343 (529)
T 1jdh_A 273 QLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-------GDREDITEPAICALRHLTSRHQE 343 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc-------CCHHHHHHHHHHHHHHHHcCCch
Confidence 7665543 5999999999999863 333333 2244444444321 01246678888888888665443
No 72
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=81.65 E-value=80 Score=36.18 Aligned_cols=443 Identities=13% Similarity=0.056 Sum_probs=210.9
Q ss_pred chhHHHHHhccCCcchHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHH-HHHhhHHHhcccCCCHHHHHHHHHHHHH
Q 004389 220 HPLVLTALSSLHSEILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVP-QIMSLKAHLTDSSKDEEDVKAIARLFAD 298 (757)
Q Consensus 220 ~~ll~~~~~~L~~~~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~-~v~~l~~~~~~~~~d~~~~~~~~~l~~~ 298 (757)
..++.++|+.=.+.+-++.|++-+.-+.+.... . +.+|. ..+.....+.+..+|+|.+-...|++.+
T Consensus 9 ~~m~~i~~~~~~~~~~~~~a~~nl~vl~re~ag---------a---~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~ 76 (810)
T 3now_A 9 KQMMDLTFDLATPIDKRRAAANNLVVLAKEQTG---------A---ELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAA 76 (810)
T ss_dssp HHHHHHHHSSCCSSHHHHHHHHHHHHHSSCHHH---------H---HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccCHHHHHHHHhhceeeeccccc---------h---HHHHhCchHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 356667776434556778888877777653210 1 12231 1222222333334678888889999999
Q ss_pred HhhHHHHHH---HcCCchhHHHHHHHhcccccCccchhhhhHHHHHHHHHHHhcccCccccCcccchHHHHHHHHHhhHH
Q 004389 299 MGDSYVELI---ATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQVILTKRDSYISFGNEASAEAERSRRLQVFRS 375 (757)
Q Consensus 299 ~~~~~~~~i---~~~~~~~~~~l~~ll~~~~~~~~~v~~~~l~fW~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (757)
++..+.... .+..+ ++.+......++++++..+..+...+.+.+....+-..-.+|++.- .....-.+.
T Consensus 77 ~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 148 (810)
T 3now_A 77 LCENSVERTKGVLTELG-----VPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELC---TRNNREIDT 148 (810)
T ss_dssp HHTTCHHHHHHHHHHSC-----HHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHH---HHTHHHHHH
T ss_pred HHhccHHHHHHHHHHcC-----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHH---hhhhhHHHH
Confidence 987653221 11000 2334444445677777777777777777776433211001111110 000011122
Q ss_pred HHHHHHH-----------------HHHhhccCCCC--CCCCChh-hhHHHHHhhhcccc---cCCcchhhhhhhhhhhhH
Q 004389 376 AYESLVS-----------------LVSFRVQYPQD--YQDLSLE-DLKEFKHTRYDLAC---CSSSTLTESVMLIAVADV 432 (757)
Q Consensus 376 ~~~~ll~-----------------~l~~k~~~p~d--~~~~~~d-~~~~f~~~R~~~~~---~~~s~~~~~~~~~~~~d~ 432 (757)
++..|+. .+++.+.+..- .+.|-.+ .....-+.-..+++ .+.-+++..||..+. -+
T Consensus 149 ~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~-~~ 227 (810)
T 3now_A 149 LLTCLVYSITDRTISGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIAS-VC 227 (810)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHH-HH
T ss_pred HHHHHHHHhhccccChhhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHH-HH
Confidence 2222222 22222222110 0001000 00000000000111 111223444444433 35
Q ss_pred HHhhhhhcChhHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccc------cccHHHHHhhcCCCCChH
Q 004389 433 LIDAASVLGGDATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVE------AEVMPQVMALLPKLPQQP 506 (757)
Q Consensus 433 l~~~~~~l~~~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~------~~~l~~l~~~l~~l~~~~ 506 (757)
+..+|.-++.|.--+...+.+.+++..--. ..+-...=-+.+++.++..+..... ...++.++.++.+ .++
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s--~~~ 304 (810)
T 3now_A 228 LARIYENMYYDEAKARFTDQIDEYIKDKLL-APDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATT--DDE 304 (810)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHS--SCH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHhc-cCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCC--CCH
Confidence 555666666433223233333333211001 1222222233555555555544332 2456777766643 378
Q ss_pred HHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHhh-----hhhc-CCHHHHHHH
Q 004389 507 QLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS-EDTAAAAALAFRHICDDCR-----KKLC-GYLDGLYNV 579 (757)
Q Consensus 507 ~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~~~-----~~l~-p~l~~ll~~ 579 (757)
.++..+++.+|..+.--..... ....-.+.|...+... ..++..|+.+|.++..... +.+. .-+..++..
T Consensus 305 ~~q~~A~~al~~aa~~~~~R~~---I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~ 381 (810)
T 3now_A 305 LQQRVACECLIAASSKKDKAKA---LCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEA 381 (810)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHT---THHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHH---HHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHH
Confidence 9999999999986553211111 1222225555555433 2488888888888864321 1122 125677888
Q ss_pred HHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHH--HHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHH
Q 004389 580 YRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKAL--EMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRF 657 (757)
Q Consensus 580 ~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l--~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l 657 (757)
+..++..+ ..+.+.+...+++++++... ++...... ...+.+++ +++.... ......++..+
T Consensus 382 l~~lL~~~---~~d~~v~~~AveaLayLS~~--~~vk~~lv~d~g~Ip~LV----~LL~s~d-------~~i~~~al~~L 445 (810)
T 3now_A 382 CRRFLIKP---GKDKDIRRWAADGLAYLTLD--AECKEKLIEDKASIHALM----DLARGGN-------QSCLYGVVTTF 445 (810)
T ss_dssp HHHHHHCS---SCCSSHHHHHHHHHHHHTTS--HHHHHHHHHCHHHHHHHH----HHHHTTC-------GGGHHHHHHHH
T ss_pred HHHHhcCC---CCCHHHHHHHHHHHHHHhCC--cHHHHHHHHccchHHHHH----HHhCCCC-------hHHHHHHHHHH
Confidence 88888753 12467899999999987554 22221111 12333333 3443211 11122234444
Q ss_pred HHHhhhcC--------------------CCcc------h----HHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 004389 658 AYIFRYVN--------------------HPEA------V----ADAI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (757)
Q Consensus 658 ~~~~~~~~--------------------~~~~------~----~~~~-~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 706 (757)
+.+..+-. .+++ + ..++ ....|.+..++.. .++.+.+.++.++..+.
T Consensus 446 ~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NLA 523 (810)
T 3now_A 446 VNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAVC 523 (810)
T ss_dssp HHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHHH
T ss_pred HHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHHc
Confidence 44443210 0111 1 1222 2478888888865 57899999999999986
Q ss_pred H
Q 004389 707 R 707 (757)
Q Consensus 707 ~ 707 (757)
.
T Consensus 524 ~ 524 (810)
T 3now_A 524 G 524 (810)
T ss_dssp T
T ss_pred C
Confidence 4
No 73
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=81.45 E-value=33 Score=31.59 Aligned_cols=172 Identities=15% Similarity=0.023 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhhHHHHHH
Q 004389 6 TVKEALNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEAVRGLQD 85 (757)
Q Consensus 6 ~v~~al~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~~~~lr~ 85 (757)
.+...+..| .++|+..|..|-..|.++. .+++......+|.+ .+..+|..|+..|.+.- +++.. .
T Consensus 20 ~~~~L~~~L-~~~~~~vR~~A~~~L~~~~-~~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~-------~~~~~----~ 84 (211)
T 3ltm_A 20 KVEMYIKNL-QDDSYYVRRAAAYALGKIG-DERAVEPLIKALKD--EDAWVRRAAADALGQIG-------DERAV----E 84 (211)
T ss_dssp GHHHHHHHT-TCSSHHHHHHHHHHHHHHC-CGGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC-------CGGGH----H
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC-------CHHHH----H
Confidence 345555555 6789999999999999886 46777888888875 47889999999987642 12222 2
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccCCccchHHHHHhcCCCC-CchhHHHHHhhhchhhc-c----ccc
Q 004389 86 SLNTLLKKFHKGPPKVRTQISIAVAALAVHISAEDWGGGGIVNWLRDEMNSHP-EFVPGFLELLTVLPEEV-F----NYK 159 (757)
Q Consensus 86 ~Ll~~l~~~~~~~~~v~~kL~~~la~l~~~~~~~~W~~~~~~~~l~~~~~~~~-~~~~~~L~~L~~L~ee~-~----~~~ 159 (757)
.|+..+. .....||...+.+|+.+. -++ .++.+.+.+.... ......+..|..+.++- . ..-
T Consensus 85 ~L~~~l~---~~~~~vr~~a~~aL~~~~-------~~~--~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 152 (211)
T 3ltm_A 85 PLIKALK---DEDGWVRQSAAVALGQIG-------DER--AVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKAL 152 (211)
T ss_dssp HHHHHTT---CSSHHHHHHHHHHHHHHC-------CGG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HHHHHHc---CCCHHHHHHHHHHHHHhC-------cHH--HHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2333332 245678887777776652 122 5666666664322 12233344444333210 0 000
Q ss_pred ccCChHHHHHHHHHHHH-hHHHHHHHHHHhhhhh--HHHHHHHHHHHH
Q 004389 160 IAARPERRRQFEKELTS-QMEVALSTLTACLHIN--ELKEQVLEAFAS 204 (757)
Q Consensus 160 ~~~~~~~r~~l~~~l~~-~~~~vl~~l~~~l~~~--~~~~~~l~~l~~ 204 (757)
..-.+.-|......|.. ..+.+.+.+...++++ .++..+.+++..
T Consensus 153 ~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 153 KDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 00012334333333322 2245556666666553 577777777764
No 74
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=81.33 E-value=3.6 Score=44.26 Aligned_cols=166 Identities=13% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCCcchhhHHHHHHHHhhcccCc-------cccccHHHHHhhcC--CCC---C---hHHHHHHHHHHHHhhHHHHhhCCC
Q 004389 464 HNEWRPAEAALFCIRAISTYVSV-------VEAEVMPQVMALLP--KLP---Q---QPQLLQTVCLTIGAYSKWFDAASS 528 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~-------~~~~~l~~l~~~l~--~l~---~---~~~l~~t~~~~ig~~~~~l~~~~~ 528 (757)
++.|+.+.+|..+++.+-..-.. .+.+..-.++.++. ++. + -..||.|++.++|.. .++...
T Consensus 185 dp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e-- 261 (800)
T 3oc3_A 185 SYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP-- 261 (800)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS--
T ss_pred CcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh--
Confidence 57899999999999987654321 12244555555432 342 1 467999999999997 554322
Q ss_pred CchhHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 529 DPSILASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 529 ~~~~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
-.++..++.+++.+. .++-.+-.+++.+ ..+...++.+++.+..-++. -+.|.+.-..+++.-+
T Consensus 262 -----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-----~DLL~~Ld~Vv~aVL~GL~D-----~DDDVRAVAAetLiPI 326 (800)
T 3oc3_A 262 -----NDIIEQLVGFLDSGDWQVQFSGLIALGYL-----KEFVEDKDGLCRKLVSLLSS-----PDEDIKLLSAELLCHF 326 (800)
T ss_dssp -----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-----GGGCCCHHHHHHHHHHHTTC-----SSHHHHHHHHHHHTTS
T ss_pred -----HHHHHHHHhhcCCCCeeehhhhHHHHHHH-----HHHHHHHHHHHHHHHhhcCC-----cccHHHHHHHHHhhhh
Confidence 134444445555554 4787788888877 33333377777777665543 1334444444443322
Q ss_pred HhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhh
Q 004389 608 ITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRY 663 (757)
Q Consensus 608 i~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 663 (757)
+ .+ .-+..++..+.+++.+... ........++.++++++.
T Consensus 327 A---~p--------~~l~~LL~iLWd~L~~LDD-----LSASTgSVMdLLAkL~s~ 366 (800)
T 3oc3_A 327 P---IT--------DSLDLVLEKCWKNIESEEL-----ISVSKTSNLSLLTKIYRE 366 (800)
T ss_dssp C---CS--------STHHHHHHHHHHHHHTCCS-----CCTTHHHHHHHHHHHHHH
T ss_pred c---ch--------hhHHHHHHHHHHHhhhhcc-----cchhhHHHHHHHHHHHcC
Confidence 2 11 2244555666777765421 122233456777776654
No 75
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=80.58 E-value=8.5 Score=37.90 Aligned_cols=163 Identities=9% Similarity=0.042 Sum_probs=88.9
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhh------hhcCCHHHHHHHHH-HHhhCcCCCCCChhhHHHHHHHHHHHHhcCC-h
Q 004389 543 GMSTSE-DTAAAAALAFRHICDDCRK------KLCGYLDGLYNVYR-TAVNGEGSLKVSAEDSLHLVEALSMVITELP-Q 613 (757)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~~~~------~l~p~l~~ll~~~~-~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~-~ 613 (757)
.+.+.+ .|...|..++..++..++. ...+++..++..+. ..+.. -....+...++++..++.... .
T Consensus 63 ~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~-----~k~~~~~~a~~~l~~~~~~~~~~ 137 (278)
T 4ffb_C 63 YITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTS-----SRATTKTQSMSCILSLCGLDTSI 137 (278)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSC-----CCHHHHHHHHHHHHHHHHTSSSS
T ss_pred HhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcC-----ccHHHHHHHHHHHHHHHHhcCcH
Confidence 344544 4778888888888865432 22233444443332 22221 123455666666666554422 1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCC-CcchHHHHHHHHHHHHHHHHhcCCCH
Q 004389 614 VDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNH-PEAVADAIQRLWPIFKAIFDIRAWDM 692 (757)
Q Consensus 614 e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~ 692 (757)
+.. ++.+...++ ...++....++..++.+++..+. .-+..+.+..+++.+..+++. .|+
T Consensus 138 ~~~-----------~e~l~~~l~-------~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d--~~~ 197 (278)
T 4ffb_C 138 TQS-----------VELVIPFFE-------KKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGH--GDR 197 (278)
T ss_dssp HHH-----------HHHHGGGGG-------CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTC--SSH
T ss_pred HHH-----------HHHHHHHHh-------ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhC--CcH
Confidence 111 111111111 11345566677778877776553 123455667777777777765 689
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh----hhH----HHHHHHHHHHHhh
Q 004389 693 RTMESLCRACKYAVRTSKRFMG----ITI----GAILEEIQGLYQQ 730 (757)
Q Consensus 693 ~v~e~~~~~~~~~~~~~~~~~~----p~l----~~~~~~l~~~~~~ 730 (757)
.|++++..++..+.+.+|+... +++ |.....+-..|..
T Consensus 198 ~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~k~le~~f~k 243 (278)
T 4ffb_C 198 NVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQVKDLHKLFAK 243 (278)
T ss_dssp HHHHHHHHHHHHHHTC-----------CTTSSCHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHHHHHHHHHHh
Confidence 9999999999999999997542 232 5566666666764
No 76
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=77.44 E-value=81 Score=33.74 Aligned_cols=257 Identities=12% Similarity=0.072 Sum_probs=135.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhcC----------hhHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhcCCCCCChhh
Q 004389 10 ALNALYHHPDDAVRMQADRWLQDFQHT----------IDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDVEELPSEA 79 (757)
Q Consensus 10 al~~ly~~~d~~~r~~A~~~L~~~q~s----------~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ki~~~w~~l~~e~ 79 (757)
.+..+..++|+..|..|-..|..+-.. +++......+|.+ +.+.+++..|+..|++.... ++.
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~-~~~~~~~~~a~~~L~~ls~~------~~~ 93 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTAGTLHNLSHH------REG 93 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTS------HHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcC------chh
Confidence 344444678999999999999877553 3455556667764 45788999999999984332 233
Q ss_pred HHHH-HHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhccccccC---CccchHHHHHhcCCCCC-chhHHHHHhhhchh
Q 004389 80 VRGL-QDSLNTLLKKF-HKGPPKVRTQISIAVAALAVHISAEDWG---GGGIVNWLRDEMNSHPE-FVPGFLELLTVLPE 153 (757)
Q Consensus 80 ~~~l-r~~Ll~~l~~~-~~~~~~v~~kL~~~la~l~~~~~~~~W~---~~~~~~~l~~~~~~~~~-~~~~~L~~L~~L~e 153 (757)
+..+ +...+..+... ..+...++...+.+|..++..... ... +.+.++.+++.+.+... ........|..+..
T Consensus 94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 3322 22344444443 234567888888888888764321 110 01267777777765322 22333444544432
Q ss_pred hcccccccCChHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhccCCCCCcccccchhHHHHHhccCCc
Q 004389 154 EVFNYKIAARPERRRQFEKELTSQMEVALSTLTACLHINELKEQVLEAFASWLRLKHRIPGSVLASHPLVLTALSSLHSE 233 (757)
Q Consensus 154 e~~~~~~~~~~~~r~~l~~~l~~~~~~vl~~l~~~l~~~~~~~~~l~~l~~wi~~~~~~~~~~l~~~~ll~~~~~~L~~~ 233 (757)
. .++.|..+.+. ...+.++.++... ........+.+++....... -....+...+.++.+.+.+.++
T Consensus 173 ~--------~~~~~~~i~~~--~~i~~L~~ll~~~-~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~g~~~~L~~ll~~~ 239 (529)
T 1jdh_A 173 G--------NQESKLIILAS--GGPQALVNIMRTY-TYEKLLWTTSRVLKVLSVCS--SNKPAIVEAGGMQALGLHLTDP 239 (529)
T ss_dssp T--------CHHHHHHHHHT--THHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTST--THHHHHHHTTHHHHHHTTTTSS
T ss_pred C--------CHHHHHHHHHC--CCHHHHHHHHHhC-ChHHHHHHHHHHHHHHhcCc--ccHHHHHHCCCHHHHHHHHhCC
Confidence 1 12222222211 2334444444432 11134444555554433210 0001223456777788777654
Q ss_pred --chHHHHHHHHHHHhhhhccCCCCCCCCchhHHHHHHHHHHhhHHHhcccCCCHHHHHHHHHHHHHHhh
Q 004389 234 --ILSEASVNVISELIHYSAAGSSGGATVNMPLIQVIVPQIMSLKAHLTDSSKDEEDVKAIARLFADMGD 301 (757)
Q Consensus 234 --~~~~~a~~~l~~ii~~~~~~~~~~~~~~~~~~~~l~~~v~~l~~~~~~~~~d~~~~~~~~~l~~~~~~ 301 (757)
++...++.++..+....... .. ...++|.++.+. .+.|.+.....+..+..++.
T Consensus 240 ~~~~~~~a~~~L~~l~~~~~~~------~~---~~~~i~~L~~ll-----~~~~~~v~~~a~~~L~~L~~ 295 (529)
T 1jdh_A 240 SQRLVQNCLWTLRNLSDAATKQ------EG---MEGLLGTLVQLL-----GSDDINVVTCAAGILSNLTC 295 (529)
T ss_dssp CHHHHHHHHHHHHHHHTTCTTC------SC---CHHHHHHHHHHT-----TCSCHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHhcCChhh------HH---HHhHHHHHHHHH-----cCCCHHHHHHHHHHHHHHhc
Confidence 56777888888777543211 11 123344433321 23456666667777777654
No 77
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=75.06 E-value=53 Score=38.17 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=73.5
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-
Q 004389 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~- 548 (757)
+.+++.+++-|+-+= .+.++.++.++.+- .+|.+|+.+...+|..+ ..+|. +.++..|.+..+++.
T Consensus 595 RraAViaLGlI~~g~----~e~v~rlv~~L~~~-~d~~VR~gAalALGli~---aGn~~-----~~aid~L~~L~~D~d~ 661 (963)
T 4ady_A 595 RRAAVIALGFVLLRD----YTTVPRIVQLLSKS-HNAHVRCGTAFALGIAC---AGKGL-----QSAIDVLDPLTKDPVD 661 (963)
T ss_dssp HHHHHHHHHHHTSSS----CSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHT---SSSCC-----HHHHHHHHHHHTCSSH
T ss_pred HHHHHHHHHhhccCC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhc---cCCCc-----HHHHHHHHHHccCCCH
Confidence 467777777654331 24678888776542 36999999999999875 33442 566666666666654
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhC
Q 004389 549 DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNG 586 (757)
Q Consensus 549 ~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~ 586 (757)
.|+..|+.|+..+-........|.+.+++..+......
T Consensus 662 ~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~d 699 (963)
T 4ady_A 662 FVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITN 699 (963)
T ss_dssp HHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhc
Confidence 59999999999887666666678888888887777653
No 78
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=73.18 E-value=71 Score=32.52 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=113.6
Q ss_pred hhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcC------C-CC--ChHHHHHHHHHHHHhhHHHHhhCCCCchh--
Q 004389 469 PAEAALFCIRAISTYVSVV-----EAEVMPQVMALLP------K-LP--QQPQLLQTVCLTIGAYSKWFDAASSDPSI-- 532 (757)
Q Consensus 469 ~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~------~-l~--~~~~l~~t~~~~ig~~~~~l~~~~~~~~~-- 532 (757)
.+..++.+|+-++.. ++. +...++.++..+. . .. .++.++..+++++...+.--..+.. ..
T Consensus 48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~--~i~~ 124 (354)
T 3nmw_A 48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA--TLCS 124 (354)
T ss_dssp THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH--HHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH--HHHH
Confidence 345666777666654 111 1123455555442 1 11 2578899999999887631111111 01
Q ss_pred HHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHH----hhhhhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHH
Q 004389 533 LASVLSILTSGMSTS-EDTAAAAALAFRHICDD----CRKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALS 605 (757)
Q Consensus 533 l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~~----~~~~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~ 605 (757)
...+++.|++.+..+ ..++..|+.+|.+++.. .+..+. .-++.|++.+.. . -+.+.+.....++.
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~---~-----~~~~~~~~A~~aL~ 196 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE---V-----KKESTLKSVLSALW 196 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHH---C-----CCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhc---C-----CCHHHHHHHHHHHH
Confidence 245677777777654 25999999999999852 344444 235555555432 2 13456666777777
Q ss_pred HHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHH-HHHHHHHHHH
Q 004389 606 MVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAI-QRLWPIFKAI 684 (757)
Q Consensus 606 ~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 684 (757)
.+...- ++. +..+. .....+..|.+++........-...+..+..|..++..+.. .++....+. ...+|.+..+
T Consensus 197 nLs~~~-~~n-k~~i~-~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~--~~~~~~~i~~~g~i~~Lv~l 271 (354)
T 3nmw_A 197 NLSAHC-TEN-KADIC-AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT--NEDHRQILRENNCLQTLLQH 271 (354)
T ss_dssp HHHTTC-HHH-HHHHH-HSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHTTTHHHHHHHH
T ss_pred HHHccC-hhh-hHHHH-HhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccC--CHHHHHHHHHcCCHHHHHHH
Confidence 765522 222 22111 02344455555554322110000111223344444432211 122222222 2367777777
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 004389 685 FDIRAWDMRTMESLCRACKYAV 706 (757)
Q Consensus 685 l~~~~~~~~v~e~~~~~~~~~~ 706 (757)
+.. .+.++.+.++.++..+.
T Consensus 272 L~~--~~~~v~~~A~~aL~nLa 291 (354)
T 3nmw_A 272 LKS--HSLTIVSNACGTLWNLS 291 (354)
T ss_dssp TTC--SCHHHHHHHHHHHHHHT
T ss_pred HcC--CChHHHHHHHHHHHHHh
Confidence 754 56789999999998875
No 79
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=71.52 E-value=36 Score=33.98 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhcCC--CcchHHHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHHH----HHHHH
Q 004389 652 VHIDRFAYIFRYVNH--PEAVADAIQRLWPIFKAIF-DIRAWDMRTMESLCRACKYAVRTSKRFMGITIGA----ILEEI 724 (757)
Q Consensus 652 ~~l~~l~~~~~~~~~--~~~~~~~~~~~~~~l~~~l-~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~----~~~~l 724 (757)
..++.+++++..++. .+.+..+++.++..-..+. .+|...|+.+...+.+++.+...+=+.+..+=|. +++.+
T Consensus 93 eVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsi 172 (321)
T 1w9c_A 93 EVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSI 172 (321)
T ss_dssp HHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHH
Confidence 457777777777653 3345566777666555554 3466789999999999999888654443333233 44444
Q ss_pred HHHHhhcCC----cchHhhHHHHHHHhCCccccc
Q 004389 725 QGLYQQHQQ----PCFLYLSSEVIKVVFPPEVLA 754 (757)
Q Consensus 725 ~~~~~~~~~----~~~l~~~~~~i~~f~~~~~~~ 754 (757)
+=+++ |++ ..-|.++..++..+++.+++|
T Consensus 173 iWa~k-H~~r~V~e~gL~il~~ll~n~~~~~~~~ 205 (321)
T 1w9c_A 173 IWAFK-HTMRNVADTGLQILFTLLQNVAQEEAAA 205 (321)
T ss_dssp HHHTT-CSSHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHcC-CCCchHHHHHHHHHHHHHHHHhcChHHH
Confidence 44453 232 224666666666665333444
No 80
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=70.89 E-value=34 Score=33.40 Aligned_cols=181 Identities=7% Similarity=0.094 Sum_probs=97.7
Q ss_pred CCCcchhhHHHHHHHHhhcccCccc--ccc---HHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCc----hh
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVE--AEV---MPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDP----SI 532 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~--~~~---l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~----~~ 532 (757)
+.+|..+..++-.+..+........ ++. +..+...+.. + ..+..+...++.++..+...+....... .+
T Consensus 20 sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~ 99 (278)
T 4ffb_C 20 YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITL 99 (278)
T ss_dssp CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHH
Confidence 5789999998888776654433221 111 1111111111 1 3589999999999988776443221100 24
Q ss_pred HHHHHHHHH-hccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 533 LASVLSILT-SGMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 533 l~~~l~~l~-~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
...+++.++ +++.+++ .++..|..++..+++.+. ....+++.+...+.. -++..+...+..+..++..
T Consensus 100 ~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~-----Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 100 ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEK-----KLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGC-----SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHHH
Confidence 566676665 4576654 477777777777775442 223344554444443 2466777778888877776
Q ss_pred CChHH--HHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcC
Q 004389 611 LPQVD--AKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVN 665 (757)
Q Consensus 611 ~~~e~--~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 665 (757)
.+... ....+.. ++..+.+++... ...-+..+++.++.+++.++
T Consensus 170 fg~~~~~~k~~l~~----i~~~l~k~l~d~-------~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 170 FGLTNVNVQTFLPE----LLKHVPQLAGHG-------DRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HTTTTCCHHHHHHH----HGGGHHHHHTCS-------SHHHHHHHHHHHHHHHTC--
T ss_pred hCCCcCCchhHHHH----HHHHHHHHHhCC-------cHHHHHHHHHHHHHHHHHhC
Confidence 44332 2223333 333344445422 12234467788888888776
No 81
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=70.50 E-value=51 Score=31.99 Aligned_cols=64 Identities=8% Similarity=-0.009 Sum_probs=48.3
Q ss_pred cchhhHHHHHHHHHhhhcCCCcchHHHHHHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 004389 647 PRDLTVHIDRFAYIFRYVNHPEAVADAIQRLW---PIFKAIFDIRAWDMRTMESLCRACKYAVRTSKRFMGITIG 718 (757)
Q Consensus 647 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~ 718 (757)
.+....+++.++.++...+.+ | .... |.+..+++. .|..|++++..++..+++..|+.+-.+++
T Consensus 181 ~R~R~e~l~~l~~li~~~G~~-~-----~~~l~~~~~ia~ll~D--~d~~VR~aAl~~lve~y~~~Gd~v~k~lg 247 (266)
T 2of3_A 181 ARQRSECLLVIEYYITNAGIS-P-----LKSLSVEKTVAPFVGD--KDVNVRNAAINVLVACFKFEGDQMWKAAG 247 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHCSG-G-----GGGGCHHHHHGGGGGC--SSHHHHHHHHHHHHHHHHHHTTHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhcCCC-c-----cccccchHHHHHHHcC--CCHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 556778899999888877643 2 2345 665555543 68899999999999999999998777664
No 82
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=68.76 E-value=72 Score=29.30 Aligned_cols=131 Identities=7% Similarity=0.031 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCccccccHHH----HHhhcC--CCCChHHHHHHHHHHH
Q 004389 443 DATLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVVEAEVMPQ----VMALLP--KLPQQPQLLQTVCLTI 516 (757)
Q Consensus 443 ~~~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~----l~~~l~--~l~~~~~l~~t~~~~i 516 (757)
..+++++.+.+.+..... ..++......+.++.++..+=.-.-+.++.+ ++..+. ++... .+|.-+..++
T Consensus 39 ~~LlPyf~~fI~~~v~~n---l~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~-~LRd~AA~lL 114 (196)
T 4atg_A 39 QQLVPYFIQHISELILKS---FKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDD-DVRKMSADIV 114 (196)
T ss_dssp TTTHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCH-HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHH-HHHHHHHHHH
Confidence 346666666555554321 3467777777777777776533333445444 444442 44433 8999999999
Q ss_pred HhhHHHHhh-CCCCchhHHHHHHHHHhccCCCh---HHHHHHHHHHHHHHHHh-hhhhcCCHHHHHHHH
Q 004389 517 GAYSKWFDA-ASSDPSILASVLSILTSGMSTSE---DTAAAAALAFRHICDDC-RKKLCGYLDGLYNVY 580 (757)
Q Consensus 517 g~~~~~l~~-~~~~~~~l~~~l~~l~~~l~~~~---~v~~~Aa~al~~l~~~~-~~~l~p~l~~ll~~~ 580 (757)
+..+.-+.+ +|. +-+.++..+.+.+.+|. ...--|-..+..+-.+. +..+.|.++.+.+.+
T Consensus 115 ~~I~~~~~~~y~~---L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~~ 180 (196)
T 4atg_A 115 KYIYDTYSRSYKT---LAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRTI 180 (196)
T ss_dssp HHHHHHHTTTSTT---HHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHhCccCch---HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHHH
Confidence 999886654 454 78899999988887764 35566666777776544 444558777666543
No 83
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=66.04 E-value=79 Score=28.77 Aligned_cols=200 Identities=12% Similarity=0.185 Sum_probs=126.0
Q ss_pred CCCcchhhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhc
Q 004389 464 HNEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSG 543 (757)
Q Consensus 464 ~~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~ 543 (757)
+.-|.-.--++..+..+++..++--.+.+..++.++.+-. --.+.......+|..+ .-+|+ .+.++++.++..
T Consensus 43 DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksE-aIpltqeIa~a~G~la---~i~Pe---~v~~vVp~lfan 115 (253)
T 2db0_A 43 DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMA---KEKPE---LVKSMIPVLFAN 115 (253)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHH---HHCHH---HHHHHHHHHHHH
T ss_pred cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcc-cCchHHHHHHHHhHHH---HhCHH---HHHhhHHHHHHH
Confidence 4568877888889898888877655667777777765322 2234455566677765 34676 899999999875
Q ss_pred c--CCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHH
Q 004389 544 M--STSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALE 621 (757)
Q Consensus 544 l--~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~ 621 (757)
. ++|+ .+..-+|++.++.......+ +.+..-+..++..+ +..++...+.- +++++....
T Consensus 116 yrigd~k-ikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-----d~~Dkl~aLnF----i~alGen~~----- 176 (253)
T 2db0_A 116 YRIGDEK-TKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-----NREDKLTALNF----IEAMGENSF----- 176 (253)
T ss_dssp SCCCSHH-HHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-----SHHHHHHHHHH----HHTCCTTTH-----
T ss_pred HhcCCcc-ceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-----ChHHHHHHHHH----HHHHhccCc-----
Confidence 5 4455 89999999999998766544 33445555555432 24555544433 445542222
Q ss_pred HhhhhHHHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Q 004389 622 MLCLPVVTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAW-DMRTMESLCR 700 (757)
Q Consensus 622 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~v~e~~~~ 700 (757)
..+.|.+.++..++.... .--+....+.+..+.. ++ .++-+++...++.+.. ++.|...+..
T Consensus 177 ~yv~PfLprL~aLL~D~d-------eiVRaSaVEtL~~lA~-~n---------pklRkii~~kl~e~~D~S~lv~~~V~e 239 (253)
T 2db0_A 177 KYVNPFLPRIINLLHDGD-------EIVRASAVEALVHLAT-LN---------DKLRKVVIKRLEELNDTSSLVNKTVKE 239 (253)
T ss_dssp HHHGGGHHHHHGGGGCSS-------HHHHHHHHHHHHHHHT-SC---------HHHHHHHHHHHHHCCCSCHHHHHHHHH
T ss_pred cccCcchHHHHHHHcCcc-------hhhhHHHHHHHHHHHH-cC---------HHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 457788888887775321 1123445666666643 21 2255666667777764 4556677777
Q ss_pred HHHHHH
Q 004389 701 ACKYAV 706 (757)
Q Consensus 701 ~~~~~~ 706 (757)
.++++.
T Consensus 240 gL~rl~ 245 (253)
T 2db0_A 240 GISRLL 245 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 84
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=65.64 E-value=1.1e+02 Score=32.36 Aligned_cols=106 Identities=15% Similarity=0.084 Sum_probs=67.8
Q ss_pred HHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCc-h-hHHHHHHHHHhccCCCh-HHHHHHHHHHHHHHH---Hh
Q 004389 492 MPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDP-S-ILASVLSILTSGMSTSE-DTAAAAALAFRHICD---DC 565 (757)
Q Consensus 492 l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~-~-~l~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~---~~ 565 (757)
++.++..|.+ .++.++..++..++.++. +++... . .-...++.+++.+.++. .++..|+.+|.+++. ..
T Consensus 4 l~~lv~~L~s--~~~~~q~~A~~~L~~l~~---~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 4 IPKAVQYLSS--QDEKYQAIGAYYIQHTCF---QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp HHHHHHHHHS--SCTHHHHHHHHHHHHHTS---SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHHHHHCC--CCHHHHHHHHHHHHHHHc---CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 5667776653 257789999999988762 233211 0 11234555666665543 599999999999984 34
Q ss_pred hhhhc--CCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 566 RKKLC--GYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 566 ~~~l~--p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
+..+. .-++.+++.+.. . -+.+.+.....+++.+...
T Consensus 79 k~~i~~~G~i~~Lv~lL~~---~-----~~~~~~~~a~~aL~nLa~~ 117 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRR---T-----GNAEIQKQLTGLLWNLSST 117 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTT---C-----CCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCHHHHHHHHhh---C-----CCHHHHHHHHHHHHHHhcC
Confidence 45453 456666666431 2 1357788888899888876
No 85
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=64.97 E-value=97 Score=32.81 Aligned_cols=185 Identities=9% Similarity=0.029 Sum_probs=96.9
Q ss_pred hHHHHHHHHHHHHhhHHHHhhCCCCchh--HHHHHHHHHhccCCC-hHHHHHHHHHHHHHHH----Hhhhhhc--CCHHH
Q 004389 505 QPQLLQTVCLTIGAYSKWFDAASSDPSI--LASVLSILTSGMSTS-EDTAAAAALAFRHICD----DCRKKLC--GYLDG 575 (757)
Q Consensus 505 ~~~l~~t~~~~ig~~~~~l~~~~~~~~~--l~~~l~~l~~~l~~~-~~v~~~Aa~al~~l~~----~~~~~l~--p~l~~ 575 (757)
++.++..++++++.++.--..+.. .. ...+++.|++.+..+ ..++..|+.+|.+++. .++..+. .-++.
T Consensus 213 ~~~l~~~Aa~aL~nLa~~~~~~k~--~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~ 290 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFGDVANKA--TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKA 290 (458)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHH--HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcccHH--HHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHH
Confidence 577899999999887632111111 01 245677777777654 3599999999999975 2344443 22444
Q ss_pred HHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCcchhhHHHH
Q 004389 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHPRDLTVHID 655 (757)
Q Consensus 576 ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 655 (757)
|++.+ ... -+.+.+.....++..+...- ++. +..+. .....+..|.+.+........-......+..|.
T Consensus 291 LV~lL---l~s-----~~~~v~~~A~~aL~nLs~~~-~~n-k~~I~-~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 291 LMECA---LEV-----KKESTLKSVLSALWNLSAHC-TEN-KADIC-AVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359 (458)
T ss_dssp HHHHH---TTC-----CSHHHHHHHHHHHHHHHHHC-HHH-HHHHH-HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH
T ss_pred HHHHH---hcC-----CCHHHHHHHHHHHHHHccCC-HHH-HHHHH-HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 54443 221 13456667777777766522 222 22111 023344445555543221100001112233444
Q ss_pred HHHHHhhhcCCCcchHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 004389 656 RFAYIFRYVNHPEAVADAI-QRLWPIFKAIFDIRAWDMRTMESLCRACKYAV 706 (757)
Q Consensus 656 ~l~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~ 706 (757)
.++..+.. .++....+. ...+|.+..++.. .+.++.+.++.++..+.
T Consensus 360 nLs~~~a~--~~~~~~~i~~~G~i~~Lv~LL~~--~~~~v~~~A~~aL~nLa 407 (458)
T 3nmz_A 360 NVSSLIAT--NEDHRQILRENNCLQTLLQHLKS--HSLTIVSNACGTLWNLS 407 (458)
T ss_dssp HHHHHHTT--CHHHHHHHHHTTHHHHHHHHSSC--SCHHHHHHHHHHHHHHH
T ss_pred HHHhcccC--CHHHHHHHHHcccHHHHHHHHcC--CChHHHHHHHHHHHHHH
Confidence 44432111 122222222 2467777777754 56789999999998876
No 86
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=63.18 E-value=88 Score=28.72 Aligned_cols=142 Identities=12% Similarity=0.111 Sum_probs=74.9
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcC-----CCCChHHHHHHHHHHHHhhHHHHhhCCCCc------hhHHHHHH
Q 004389 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLP-----KLPQQPQLLQTVCLTIGAYSKWFDAASSDP------SILASVLS 538 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-----~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~------~~l~~~l~ 538 (757)
+++++..+.. . ++-...+|-+++.+. .+. +..+..+.+.++.. +-.||... +++|+++.
T Consensus 25 r~~aL~sL~~---D--~gL~~LlPyf~~fI~~~v~~nl~-~l~~L~~lm~~~~A----Ll~N~~l~lepYlH~LipsvLt 94 (196)
T 4atg_A 25 KDIAIECLEK---E--SGLQQLVPYFIQHISELILKSFK-EAEVLKTCIALYFS----LIKNKHVFIDPYLHQILPSLLT 94 (196)
T ss_dssp HHHHHHHHHH---C--SSCTTTHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH----HHHCTTCCCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhc---C--CChhhhHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHH----HHcCCCCChHHHHHHHHHHHHH
Confidence 5666666552 1 122456676666542 222 34444444544443 34455531 34555555
Q ss_pred HHHh-ccCCChHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHH
Q 004389 539 ILTS-GMSTSEDTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAK 617 (757)
Q Consensus 539 ~l~~-~l~~~~~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~ 617 (757)
.++. .+. +..+|..||..+..+|+.++..-..--+-+...+.+.+..+. -+ -...+.|+.- +.+++.+.
T Consensus 95 Cll~k~l~-~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~---~~---l~t~YGAi~G-L~~lG~~~-- 164 (196)
T 4atg_A 95 CVIGKSIV-DDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPN---RS---EDSQYGALYC-LSILSKNV-- 164 (196)
T ss_dssp HHHCTTCC-CHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTT---SC---HHHHHHHHHH-HHHHCHHH--
T ss_pred HHHhcccC-HHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCC---CC---hHHHHHHHHH-HHHhHHHH--
Confidence 4432 222 224999999999999999876544334557777777765431 12 2344444432 44555443
Q ss_pred HHHHHhhhhHHHHHHH
Q 004389 618 KALEMLCLPVVTPLQE 633 (757)
Q Consensus 618 ~~l~~l~~~~~~~l~~ 633 (757)
+..++-|-+..+.+
T Consensus 165 --vr~~llP~l~~~~~ 178 (196)
T 4atg_A 165 --VNTVIREHAEEYKR 178 (196)
T ss_dssp --HHTHHHHHHHHHHH
T ss_pred --HHHhhhcCHHHHHH
Confidence 33444455544443
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=61.02 E-value=63 Score=34.98 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=51.7
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh-
Q 004389 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE- 548 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~- 548 (757)
+|+|-.+++++ ..++.+ ...+.+++..+. ...-.+|...+.-+.=+.+.+. -++.+++.+..|+.+++
T Consensus 245 RETaAQtLGaL-~hLp~e-~~IL~qLV~~l~--~~~WEVRHGGLLGLKYL~DLL~-------~Ld~Vv~aVL~GL~D~DD 313 (800)
T 3oc3_A 245 RDAAAYLLSRI-YPLIGP-NDIIEQLVGFLD--SGDWQVQFSGLIALGYLKEFVE-------DKDGLCRKLVSLLSSPDE 313 (800)
T ss_dssp HHHHHHHHHHH-TTTSCS-CCHHHHHTTGGG--CSCHHHHHHHHHHHHHTGGGCC-------CHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHH-HhCChh-HHHHHHHHhhcC--CCCeeehhhhHHHHHHHHHHHH-------HHHHHHHHHHhhcCCccc
Confidence 57888888887 555544 333444443221 1245677777766653311111 27899999999998765
Q ss_pred HHHHHHHHHHHHHH
Q 004389 549 DTAAAAALAFRHIC 562 (757)
Q Consensus 549 ~v~~~Aa~al~~l~ 562 (757)
+|+..||.++..++
T Consensus 314 DVRAVAAetLiPIA 327 (800)
T 3oc3_A 314 DIKLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhhhhc
Confidence 69999998876554
No 88
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=60.96 E-value=98 Score=28.16 Aligned_cols=178 Identities=14% Similarity=0.158 Sum_probs=100.6
Q ss_pred ccHHHHHhhcCCCCChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhh
Q 004389 490 EVMPQVMALLPKLPQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRK 567 (757)
Q Consensus 490 ~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~~~ 567 (757)
+.+.+++..+-. +--.|+++++.++...+ ...|+ +..+++.-++..++..+ ++...-+++|..++..-.+
T Consensus 32 ~~l~~lI~~LDD--DlwtV~kNAl~vi~~i~---~~~~e---l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 32 SVLKKLIELLDD--DLWTVVKNAISIIMVIA---KTRED---LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HHHHHHHHHTTC--SCHHHHHHHHHHHHHHH---TTCGG---GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcc--HHHHHHHhHHHHHHHHH---HHhHH---HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 445566655421 23679999999998765 34454 77888877766554332 5777888899988876555
Q ss_pred hhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcCCCcccccCc
Q 004389 568 KLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLCLPVVTPLQEIINQGPEILQKKHP 647 (757)
Q Consensus 568 ~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~ 647 (757)
.+.+.++.+..- ..-+ ++..+..+-.+++.+..+-| .++..++..+...+.. + + .
T Consensus 104 ~v~~vVp~lfan----yrig-----d~kikIn~~yaLeeIaranP---------~l~~~v~rdi~smlts--k--d---~ 158 (253)
T 2db0_A 104 LVKSMIPVLFAN----YRIG-----DEKTKINVSYALEEIAKANP---------MLMASIVRDFMSMLSS--K--N---R 158 (253)
T ss_dssp HHHHHHHHHHHH----SCCC-----SHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHHHTSC--S--S---H
T ss_pred HHHhhHHHHHHH----HhcC-----CccceecHHHHHHHHHHhCh---------HHHHHHHHHHHHHhcC--C--C---h
Confidence 554544443332 2221 34556666666655554432 4555666666666541 1 1 1
Q ss_pred chhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 004389 648 RDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRT 708 (757)
Q Consensus 648 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~ 708 (757)
.+...+++.|+.+ + +.-..+..-.+|-+..++ +..|.-|+-++...+.++.+.
T Consensus 159 ~Dkl~aLnFi~al----G--en~~~yv~PfLprL~aLL--~D~deiVRaSaVEtL~~lA~~ 211 (253)
T 2db0_A 159 EDKLTALNFIEAM----G--ENSFKYVNPFLPRIINLL--HDGDEIVRASAVEALVHLATL 211 (253)
T ss_dssp HHHHHHHHHHHTC----C--TTTHHHHGGGHHHHHGGG--GCSSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHH----h--ccCccccCcchHHHHHHH--cCcchhhhHHHHHHHHHHHHc
Confidence 1233455555543 2 122233333445444444 335677778888888776553
No 89
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=60.92 E-value=2.3e+02 Score=32.38 Aligned_cols=302 Identities=10% Similarity=0.044 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHhhcc---------CCCCCCCCChhhhHHHHH----------------hhhcccccCCcchhhhhh
Q 004389 371 QVFRSAYESLVSLVSFRVQ---------YPQDYQDLSLEDLKEFKH----------------TRYDLACCSSSTLTESVM 425 (757)
Q Consensus 371 ~~~~~~~~~ll~~l~~k~~---------~p~d~~~~~~d~~~~f~~----------------~R~~~~~~~~s~~~~~~~ 425 (757)
..+..++..++....+|+. .|++ -.+.+++.+.|.+ ....
T Consensus 294 ~~L~~Fl~~L~~~f~kR~~~Er~~~~~~~p~~-~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~-------------- 358 (799)
T 1vsy_4 294 KPNAKFVHAFIKSYHGRVKYEEDICARGVTNG-ICLTSFCHEEIVEIFLNIISLGSQNKNPDIANY-------------- 358 (799)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTTTTCCCS-SSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCCCchh-hcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHH--------------
Q ss_pred hhhhhhHHHhhhhhcC--hhHHHHHHHHHHHHhHhhCCCC--CCCcchhhHHHHHHHHhhcccCcccc--ccHHHHHhh-
Q 004389 426 LIAVADVLIDAASVLG--GDATLKILYIKFVEGVACCGNK--HNEWRPAEAALFCIRAISTYVSVVEA--EVMPQVMAL- 498 (757)
Q Consensus 426 ~~~~~d~l~~~~~~l~--~~~~l~~l~~~l~~~~~~~~~~--~~~w~~~Ea~l~~l~~ia~~~~~~~~--~~l~~l~~~- 498 (757)
+..+++.++.+-+ ++.+++.+.+.+...+ .. ...-.+.-+++.++.+++..+..... .++..++..
T Consensus 359 ---~~~~l~~La~l~P~~~~lVlP~vL~r~y~sL----e~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~ 431 (799)
T 1vsy_4 359 ---YISCFAYLLELDPSNAYLIYDKILIDLYDTL----ADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSML 431 (799)
T ss_dssp ---HHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH----TTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCccceehHHHHHHHHHHh----ccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q ss_pred cCCCCC-hHHHHHHHHHHHHhhHH--------------------------------------------------HHhhCC
Q 004389 499 LPKLPQ-QPQLLQTVCLTIGAYSK--------------------------------------------------WFDAAS 527 (757)
Q Consensus 499 l~~l~~-~~~l~~t~~~~ig~~~~--------------------------------------------------~l~~~~ 527 (757)
+++++. ++.-...++.+++.++. .-....
T Consensus 432 LpgID~ND~~KT~~tl~fi~~i~s~ipi~d~s~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~sT~ 511 (799)
T 1vsy_4 432 VSKLDMNDTNLTSNLINGIVSIAAFIPIQDLTGEDDYISFESDTLPLVQQHFYHIKCGESSKTFRVDDELLNNAFKASTT 511 (799)
T ss_dssp HHTCCSSCHHHHHHHHHHHHHHHHTSCBCCCCCCCTTCCHHHHTHHHHHHHHHHHHTTCCSSSCCCCTTHHHHHHHHHTS
T ss_pred hccCCcccHHHHHHHHHHHHHHHHhccccccCCcchhhhhhhhhhhhhhhhhhhhccccccccccccHHHHHHHHHHHHh
Q ss_pred CCchhHHHHHHHHHhccCCCh--HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHH--
Q 004389 528 SDPSILASVLSILTSGMSTSE--DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEA-- 603 (757)
Q Consensus 528 ~~~~~l~~~l~~l~~~l~~~~--~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~ea-- 603 (757)
....++...+.-++..+.+.. .+...-..++..++..|.+ +..+..++.+.+...+ .........+.+=
T Consensus 512 ~f~~~v~~f~drvf~llen~~Ee~l~~~l~~~~~~l~~~lS~---~if~~~l~k~~~fv~~----n~~~~a~~~v~~L~~ 584 (799)
T 1vsy_4 512 VFQSMLKVYVEKIFQLVDVDLEDSLVTKINQTTMILQESMDD---KIFNYFASLLNRNFWS----NDSFKEKDPNYELVT 584 (799)
T ss_dssp THHHHHHHHHHHHHHHTTSCCCTHHHHHHHHHHHHHHHTBCH---HHHHHHHHHHHHHHHS----CSCCCSSSCCTHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHH
Q ss_pred --HHHHHhcCChHHHHHHHHHhhhhHHHHHHHHHhcC-----CCcccccCcchhhHHHHHHHHHhhhcCCCcchHHHHHH
Q 004389 604 --LSMVITELPQVDAKKALEMLCLPVVTPLQEIINQG-----PEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADAIQR 676 (757)
Q Consensus 604 --i~~vi~~~~~e~~~~~l~~l~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 676 (757)
+++++..-| . .+..++..+...+...+++. ...........+...+..++.+++.-+ ..+.+..++
T Consensus 585 ~~~~a~~~~~P----~-~~~~~~p~l~~~i~~~i~~ga~s~rs~~e~~~~D~~L~w~l~iL~~~v~~~g--~~lL~y~de 657 (799)
T 1vsy_4 585 IPLAALVRRNN----G-LSKELVRTLLFHIKEQIKRGAGSVRSTSEIQQRDVKLVLYLTALNDVLRNCH--ESLLEYSDE 657 (799)
T ss_dssp HHHHHHHHHCG----G-GHHHHHHHHHHHHHHHHHTTTTCSCCSSSCCTTTHHHHHHHHHHHHHHTTTG--GGGGTTHHH
T ss_pred HHHHHHHHhCH----H-HHHHHHHHHHHHHHHHHhccccccccccccCcchHHHHHHHHHHHHHHhcCc--HHHHccHHH
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 004389 677 LWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS 709 (757)
Q Consensus 677 ~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~ 709 (757)
+..++..+++ -..+..+...+|.++++++..+
T Consensus 658 L~~il~~~~~-~~k~~~~~~~~~~ll~~lL~sL 689 (799)
T 1vsy_4 658 LITFMKYLYD-NVTNPPLDVITSIVIHSALATL 689 (799)
T ss_dssp HHHHHHHHHH-SCCCHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHH-HhcCcchHHHHHHHHHHHHHHh
No 90
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=59.04 E-value=3e+02 Score=33.19 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhcC
Q 004389 691 DMRTMESLCRACKYAVRTSKRFMGITIGAILEEIQGLYQQHQ 732 (757)
Q Consensus 691 ~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~ 732 (757)
+.+++.++|.++.++.+.+++.+.|+++.+.+.+...+....
T Consensus 597 ~k~vr~~a~~al~~L~~~~~~~L~p~~~~i~~~~~~~l~~~~ 638 (1204)
T 3a6p_A 597 VRNVRRHACSSIIKMCRDYPQLVLPNFDMLYNHVKQLLSNEL 638 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCcc
Confidence 357999999999999999999999999999999888776433
No 91
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=57.14 E-value=47 Score=33.92 Aligned_cols=141 Identities=11% Similarity=0.125 Sum_probs=81.0
Q ss_pred CCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhcCCCCCh--HHHHHHHHHHHHhhHHHHhhCCCCchhH--H
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQQ--PQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l~~~--~~l~~t~~~~ig~~~~~l~~~~~~~~~l--~ 534 (757)
.+..-++.++.++..++....+. ....++.++..+..-... ..++..++.++...+.++..+++..+.+ .
T Consensus 183 ~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 262 (354)
T 3nmw_A 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 262 (354)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc
Confidence 34566788888888887643221 123466677666432211 2578888888887776543333211011 1
Q ss_pred HHHHHHHhccCCCh-HHHHHHHHHHHHHHHH---hhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 535 SVLSILTSGMSTSE-DTAAAAALAFRHICDD---CRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 535 ~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~---~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
.+++.|++.+.++. .++..|+.++.+++.. .+..+... ..+..+.+++..+ +...+.....++..+...
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--G~i~~Lv~LL~s~-----~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM--GAVSMLKNLIHSK-----HKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHT--THHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHC--CCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC
Confidence 23455555565543 5999999999999842 33334321 2334444455432 355677788888887776
Q ss_pred CC
Q 004389 611 LP 612 (757)
Q Consensus 611 ~~ 612 (757)
-|
T Consensus 336 ~~ 337 (354)
T 3nmw_A 336 RP 337 (354)
T ss_dssp CC
T ss_pred CH
Confidence 44
No 92
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=56.31 E-value=2.6e+02 Score=31.62 Aligned_cols=264 Identities=9% Similarity=0.049 Sum_probs=132.1
Q ss_pred CcchhhHHHHHHHHhhcccCcc----ccccHHHHHhhcCCCCC-hHHHHHHHHHHHHhhHHHHhhCCCCc---hhHHHHH
Q 004389 466 EWRPAEAALFCIRAISTYVSVV----EAEVMPQVMALLPKLPQ-QPQLLQTVCLTIGAYSKWFDAASSDP---SILASVL 537 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~----~~~~l~~l~~~l~~l~~-~~~l~~t~~~~ig~~~~~l~~~~~~~---~~l~~~l 537 (757)
+..-+|.+..+++.++..-... ....++.+++.+..-+. ...++..++..+.+..- ..||... .-...++
T Consensus 470 s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLli--s~np~~~f~~~~~~~aI 547 (778)
T 3opb_A 470 SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLI--FTNPGLIFKKYSALNAI 547 (778)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHH--TSCHHHHSSSSCSTTHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHh--cCCHHHHcCCCccccch
Confidence 4456789999999998652111 12446778877754321 12478888888888762 2222100 0001455
Q ss_pred HHHHhccCC-Ch--------------HHHHHHHHHHHHHHHHh-------hhhhcCCHHHHHHHHHHHhhCcCCCCCChh
Q 004389 538 SILTSGMST-SE--------------DTAAAAALAFRHICDDC-------RKKLCGYLDGLYNVYRTAVNGEGSLKVSAE 595 (757)
Q Consensus 538 ~~l~~~l~~-~~--------------~v~~~Aa~al~~l~~~~-------~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~ 595 (757)
+.|+.-++. +. .-.-.|..||.+++..- +..+... ...+..+.+++... +..
T Consensus 548 ~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~-~ga~~~L~~LL~s~-----n~~ 621 (778)
T 3opb_A 548 PFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVST-KVYWSTIENLMLDE-----NVP 621 (778)
T ss_dssp HHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHS-HHHHHHHHHGGGCS-----SHH
T ss_pred HHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHh-cCHHHHHHHHHhCC-----CHH
Confidence 555554441 21 01558899999999742 3333322 12345555555421 246
Q ss_pred hHHHHHHHHHHHHhcCChHHH-HHHHHHhhhhH-HHHHHHHHhcCCCcccccCcchhhHHHHHHHHHhhhcCCCcchHHH
Q 004389 596 DSLHLVEALSMVITELPQVDA-KKALEMLCLPV-VTPLQEIINQGPEILQKKHPRDLTVHIDRFAYIFRYVNHPEAVADA 673 (757)
Q Consensus 596 ~~~~l~eai~~vi~~~~~e~~-~~~l~~l~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 673 (757)
.+....++++.++.. ++.+ ...+.. -.|- ..++.-++.-... .+.+..+....++..++... +..+..+
T Consensus 622 VrrAA~elI~NL~~~--~e~i~~k~~~~-~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~-----~~ia~~l 692 (778)
T 3opb_A 622 LQRSTLELISNMMSH--PLTIAAKFFNL-ENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTI-----PLIAKEL 692 (778)
T ss_dssp HHHHHHHHHHHHHTS--GGGTGGGTSCC-SSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred HHHHHHHHHHHHhCC--cHHHHHHHHhh-cCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCC-----hHHHHHH
Confidence 788899999998874 2221 111100 0122 1123223222111 11112223333444443221 1111222
Q ss_pred H--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh----h-hhhhhhH--HHHHHHHHHHHhhc-CCcchHhhHHHH
Q 004389 674 I--QRLWPIFKAIFDIRAWDMRTMESLCRACKYAVRTS----K-RFMGITI--GAILEEIQGLYQQH-QQPCFLYLSSEV 743 (757)
Q Consensus 674 ~--~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~----~-~~~~p~l--~~~~~~l~~~~~~~-~~~~~l~~~~~~ 743 (757)
+ ....+.+..+++....+++++.++..++..++... + +.+.-+. +++.+.+....+.. .-+.|+.++-.+
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~~~ 772 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVI 772 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHHHH
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 2 23556666667665568999999999999988622 2 2233333 34555555554432 223455555544
Q ss_pred HHH
Q 004389 744 IKV 746 (757)
Q Consensus 744 i~~ 746 (757)
...
T Consensus 773 ~~~ 775 (778)
T 3opb_A 773 LAK 775 (778)
T ss_dssp HTT
T ss_pred HHh
Confidence 443
No 93
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=55.73 E-value=2.4e+02 Score=30.90 Aligned_cols=226 Identities=6% Similarity=0.036 Sum_probs=117.5
Q ss_pred CcchhhHHHHHHHHhhcccCccc----cccHHHHHhhcC----C----------C--CChHHHHHHHHHHHHhhHHH---
Q 004389 466 EWRPAEAALFCIRAISTYVSVVE----AEVMPQVMALLP----K----------L--PQQPQLLQTVCLTIGAYSKW--- 522 (757)
Q Consensus 466 ~w~~~Ea~l~~l~~ia~~~~~~~----~~~l~~l~~~l~----~----------l--~~~~~l~~t~~~~ig~~~~~--- 522 (757)
+..-.|.+..++..++.. +... ...++.+++.+. . . ...+.|+..+..+|..++.-
T Consensus 147 ~~~~~e~aa~aL~nLS~~-~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~ 225 (584)
T 3l6x_A 147 DMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSE 225 (584)
T ss_dssp SHHHHHHHHHHHHHHTTS-GGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHH
T ss_pred CHHHHHHHHHHHHHHhCC-chhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHH
Confidence 344456666677767652 2111 133666666541 1 0 12478999999999887531
Q ss_pred ----HhhCCCCchhHHHHHHHHHhccC--CC-hHHHHHHHHHHHHHHHHhhhhhc---CCH-------------------
Q 004389 523 ----FDAASSDPSILASVLSILTSGMS--TS-EDTAAAAALAFRHICDDCRKKLC---GYL------------------- 573 (757)
Q Consensus 523 ----l~~~~~~~~~l~~~l~~l~~~l~--~~-~~v~~~Aa~al~~l~~~~~~~l~---p~l------------------- 573 (757)
+..... .++.++.++-.++. ++ .+....|..+|++||..+...+. .+.
T Consensus 226 ~R~~i~~~~G---li~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve 302 (584)
T 3l6x_A 226 ARRKLRECDG---LVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYE 302 (584)
T ss_dssp HHHHHHHSTT---HHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGG
T ss_pred HHHHHHHcCC---cHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHH
Confidence 222232 45566666655431 12 24889999999999976543321 111
Q ss_pred ----HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChHHHHHHHHHhh--hhHHHHHHHHHhcCCCcccccCc
Q 004389 574 ----DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQVDAKKALEMLC--LPVVTPLQEIINQGPEILQKKHP 647 (757)
Q Consensus 574 ----~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e~~~~~l~~l~--~~~~~~l~~~~~~~~~~~~~~~~ 647 (757)
+..+..+..++... -+.+.++....++.++...-.. ....+...+ ...+..|.+++.... .
T Consensus 303 ~L~~~~~v~~Ll~LL~~s----~~~~v~E~Aa~AL~nL~ag~~~--~~~~~~~~v~~~~glp~Lv~LL~s~~-------~ 369 (584)
T 3l6x_A 303 LLFQPEVVRIYISLLKES----KTPAILEASAGAIQNLCAGRWT--YGRYIRSALRQEKALSAIADLLTNEH-------E 369 (584)
T ss_dssp GGGSHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHSSCSH--HHHHHHHHHTSHHHHHHHHHGGGCSC-------H
T ss_pred HHhcccHHHHHHHHHccC----CCHHHHHHHHHHHHHHHcCCcc--ccHHHHHHHHHcCcHHHHHHHHcCCC-------H
Confidence 12344455555421 1355666777777766543211 111122222 233444555554322 1
Q ss_pred chhhHHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHHhhh
Q 004389 648 RDLTVHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRA------WDMRTMESLCRACKYAVRTSKR 711 (757)
Q Consensus 648 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~------~~~~v~e~~~~~~~~~~~~~~~ 711 (757)
.....+...|+.+...- ..-..+-...+|.|..+|..-. .+.+++..+|..++.++..-.+
T Consensus 370 ~v~~~A~~aL~nLs~~~---~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~ 436 (584)
T 3l6x_A 370 RVVKAASGALRNLAVDA---RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE 436 (584)
T ss_dssp HHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCh---hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH
Confidence 12223334444443322 2222334667888777775421 1468889999999887754333
No 94
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=50.71 E-value=58 Score=34.59 Aligned_cols=141 Identities=11% Similarity=0.121 Sum_probs=82.2
Q ss_pred CCcchhhHHHHHHHHhhcccCcc------ccccHHHHHhhcCCCCC--hHHHHHHHHHHHHhhHHHHhhCCCCchhH--H
Q 004389 465 NEWRPAEAALFCIRAISTYVSVV------EAEVMPQVMALLPKLPQ--QPQLLQTVCLTIGAYSKWFDAASSDPSIL--A 534 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~------~~~~l~~l~~~l~~l~~--~~~l~~t~~~~ig~~~~~l~~~~~~~~~l--~ 534 (757)
.+..-.+.++.+++.++...... ....++.++..+..-.. ...++..++.++...+.++..+++..+.+ .
T Consensus 299 ~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 299 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 34566788888888877643221 12346666666643221 12588888888888876554444311111 1
Q ss_pred HHHHHHHhccCCCh-HHHHHHHHHHHHHHH---HhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 535 SVLSILTSGMSTSE-DTAAAAALAFRHICD---DCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 535 ~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~---~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
.+++.++..+.++. .++..|+.++.+++. +.+..+.. ...+..+.+++..+ +.+.+.....++..+...
T Consensus 379 G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~G~I~~Lv~LL~s~-----~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWD--MGAVSMLKNLIHSK-----HKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHH--HTHHHHHHTTTTCS-----SHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHhCC-----CHHHHHHHHHHHHHHHcC
Confidence 24555666665543 599999999999984 23333332 12344445555432 355677777888777765
Q ss_pred CC
Q 004389 611 LP 612 (757)
Q Consensus 611 ~~ 612 (757)
-|
T Consensus 452 ~p 453 (458)
T 3nmz_A 452 RP 453 (458)
T ss_dssp CS
T ss_pred CH
Confidence 43
No 95
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=46.97 E-value=63 Score=27.03 Aligned_cols=53 Identities=21% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 004389 11 LNALYHHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLRS 66 (757)
Q Consensus 11 l~~ly~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~~ 66 (757)
|..+...+|+..|..|-..|..+. .+++......+|.+ .+..||..|+..|.+
T Consensus 47 L~~~L~d~~~~vR~~A~~aL~~~~-~~~a~~~L~~~L~d--~~~~VR~~A~~aL~~ 99 (131)
T 1te4_A 47 LLESLSNEDWRIRGAAAWIIGNFQ-DERAVEPLIKLLED--DSGFVRSGAARSLEQ 99 (131)
T ss_dssp HHHGGGCSCHHHHHHHHHHHGGGC-SHHHHHHHHHHHHH--CCTHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHcC--CCHHHHHHHHHHHHH
Confidence 333445678888888877777765 46666777777764 456788888887765
No 96
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=45.16 E-value=25 Score=35.95 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=66.2
Q ss_pred CCcchhhHHHHHHHHhhcccCccccccHHHHHhhcC-CC-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHh
Q 004389 465 NEWRPAEAALFCIRAISTYVSVVEAEVMPQVMALLP-KL-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTS 542 (757)
Q Consensus 465 ~~w~~~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~-~l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~ 542 (757)
.+...+--..+.+..+++. + ++.+ -+.+.+. .+ .++|.+|..++.++|+.. .|+ .++.+...+-+
T Consensus 80 ~d~~lKrLvYLyl~~~~~~-~---~e~i-Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~-----~~~---m~~~l~~~lk~ 146 (355)
T 3tjz_B 80 NDPTLRRMCYLTIKEMSCI-A---EDVI-IVTSSLTKDMTGKEDSYRGPAVRALCQIT-----DST---MLQAIERYMKQ 146 (355)
T ss_dssp CCHHHHHHHHHHHHHHTTT-S---SCGG-GGHHHHHHHHHSSCHHHHHHHHHHHHHHC-----CTT---THHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-H---HHHH-HHHHHHHhhcCCCcHhHHHHHHHHHhcCC-----CHH---HHHHHHHHHHH
Confidence 4445445455555555555 1 2222 2222222 12 237999999999999974 365 88899999999
Q ss_pred ccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhh
Q 004389 543 GMSTSE-DTAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVN 585 (757)
Q Consensus 543 ~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~ 585 (757)
++.+.. .|+..|+.+..+++....+.+..+ ++.+.+++.
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~----~~~l~~ll~ 186 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSFDVVKRW----VNEAQEAAS 186 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCHHHHHTT----HHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCHHHHHHH----HHHHHHHhc
Confidence 997754 499999999988887665544443 344455543
No 97
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=40.03 E-value=1.7e+02 Score=34.09 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhcCChH
Q 004389 550 TAAAAALAFRHICDDCRKKLCGYLDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITELPQV 614 (757)
Q Consensus 550 v~~~Aa~al~~l~~~~~~~l~p~l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~~~~e 614 (757)
++..|+.|+..+|-.. | -+.+++.+..+... -+...|...+.|+|.|.......
T Consensus 628 VR~gAalALGli~aGn-----~-~~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 628 VRCGTAFALGIACAGK-----G-LQSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHHHHHHHTSSS-----C-CHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHHHHhccCC-----C-cHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCccc
Confidence 6666666666554221 1 14455555555432 24667777888888776654433
No 98
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=39.91 E-value=1.1e+02 Score=28.88 Aligned_cols=146 Identities=13% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHhhCCCCCCCcchhhHHHHHHHHhhcccCcc-----ccccHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 004389 445 TLKILYIKFVEGVACCGNKHNEWRPAEAALFCIRAISTYVSVV-----EAEVMPQVMALLPKLPQQPQLLQTVCLTIGAY 519 (757)
Q Consensus 445 ~l~~l~~~l~~~~~~~~~~~~~w~~~Ea~l~~l~~ia~~~~~~-----~~~~l~~l~~~l~~l~~~~~l~~t~~~~ig~~ 519 (757)
.++.+.+.|. +.+-.-.+.+..+++.++..-++. +..-++.++..+.+-+ ++.++..+..++..+
T Consensus 53 ~Ip~LV~lL~---------s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nL 122 (233)
T 3tt9_A 53 GILKLLQLLK---------VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNL 122 (233)
T ss_dssp HHHHHHHGGG---------CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHc---------CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHH
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhccC------------------CChHHHHHHHHHHHHHHH---HhhhhhcCC---HHH
Q 004389 520 SKWFDAASSDPSILASVLSILTSGMS------------------TSEDTAAAAALAFRHICD---DCRKKLCGY---LDG 575 (757)
Q Consensus 520 ~~~l~~~~~~~~~l~~~l~~l~~~l~------------------~~~~v~~~Aa~al~~l~~---~~~~~l~p~---l~~ 575 (757)
+..-...+. .....++.|...+. ++. +...|+-+|++++. +.++.|... ++.
T Consensus 123 S~~~~~k~~---i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~-v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~ 198 (233)
T 3tt9_A 123 SSNDKLKNL---MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD-IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDS 198 (233)
T ss_dssp HTSGGGHHH---HHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH-HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHH
T ss_pred HcChhhHHH---HHhccHHHHHHHHhccccCCcccccccccccchHH-HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHH
Q ss_pred HHHHHHHHhhCcCCCCCChhhHHHHHHHHHHH
Q 004389 576 LYNVYRTAVNGEGSLKVSAEDSLHLVEALSMV 607 (757)
Q Consensus 576 ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~v 607 (757)
++..+..-...+ +.+...++..+.++-.+
T Consensus 199 Lv~~l~~~~~~~---~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 199 LVHYVRGTIADY---QPDDKATENCVCILHNL 227 (233)
T ss_dssp HHHHHHHHHHTT---CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcc---cchhHHHHHHHHHHHHH
No 99
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=31.45 E-value=84 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.046 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcChhHHHHHHHHhhcCCCChHHHHHHHHHHH
Q 004389 16 HHPDDAVRMQADRWLQDFQHTIDAWQVADNLLHDATSNLETLIFCSQTLR 65 (757)
Q Consensus 16 ~~~d~~~r~~A~~~L~~~q~s~~aw~~~~~lL~~~~~~~~vr~faa~~L~ 65 (757)
..+|+..|..|-..|..+. .+++......++.+ .+..||..|+..|.
T Consensus 83 ~d~~~~VR~~A~~aL~~~~-~~~a~~~L~~~l~d--~~~~vr~~A~~aL~ 129 (131)
T 1te4_A 83 EDDSGFVRSGAARSLEQIG-GERVRAAMEKLAET--GTGFARKVAVNYLE 129 (131)
T ss_dssp HHCCTHHHHHHHHHHHHHC-SHHHHHHHHHHTTS--CCTHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHhC-cHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 5678999999999998887 67788888888864 56789999988765
No 100
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=30.07 E-value=2.4e+02 Score=24.87 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCCH--HHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGYL--DGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~l--~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..++..|.+-+.+++ .++.+|-..+..+.+.|+..+...+ ..+++.+..++.. +.+...+.++++-|-.-..+
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~----~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKN----KAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHcc----CCCHHHHHHHHHHHHHHHHH
Confidence 455555555554432 3888999889999999987655322 3355555555542 23445566666555433333
Q ss_pred C
Q 004389 611 L 611 (757)
Q Consensus 611 ~ 611 (757)
+
T Consensus 127 f 127 (163)
T 1x5b_A 127 F 127 (163)
T ss_dssp T
T ss_pred h
Confidence 3
No 101
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=29.39 E-value=5.1e+02 Score=27.07 Aligned_cols=92 Identities=8% Similarity=0.077 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHhh
Q 004389 653 HIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY--AVRTSKRFMGITIGAILEEIQGLYQQ 730 (757)
Q Consensus 653 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~p~l~~~~~~l~~~~~~ 730 (757)
.|+-+..++..++ |..+..+...++..+...+.. .+..|.|++..++.. ++....++....+|-+++.+...-+.
T Consensus 304 FL~eleeile~~~-~~ef~~i~~~lF~~la~ci~S--~hfqVAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~ 380 (449)
T 2npp_B 304 FLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 380 (449)
T ss_dssp HHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHTC--SCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHH
Confidence 4444555554432 334444555555555555543 467899998887643 33333444444455555555443333
Q ss_pred cCCcchHhhHHHHHHHh
Q 004389 731 HQQPCFLYLSSEVIKVV 747 (757)
Q Consensus 731 ~~~~~~l~~~~~~i~~f 747 (757)
|=....-.++..+...|
T Consensus 381 HWn~~V~~la~~vlk~l 397 (449)
T 2npp_B 381 HWNKTIHGLIYNALKLF 397 (449)
T ss_dssp CSSTTHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 33344444454444444
No 102
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=26.63 E-value=5.4e+02 Score=26.43 Aligned_cols=94 Identities=7% Similarity=0.087 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHHHhhhhhhhhHHHHHHHHHHHHh
Q 004389 652 VHIDRFAYIFRYVNHPEAVADAIQRLWPIFKAIFDIRAWDMRTMESLCRACKY--AVRTSKRFMGITIGAILEEIQGLYQ 729 (757)
Q Consensus 652 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~e~~~~~~~~--~~~~~~~~~~p~l~~~~~~l~~~~~ 729 (757)
..++-+..++..++ |..+..+...++..+...+.+ .+..|.|++..++.. ++....++....+|.+++.+...-.
T Consensus 270 lFL~Ele~iLe~~~-~~~f~~i~~~lf~~la~ci~S--~hfqVAErAL~~wnNe~i~~li~~n~~~IlPii~p~L~~~~~ 346 (403)
T 3fga_B 270 MFLNELEEILDVIE-PSEFVKIMEPLFRQLAKCVSS--PHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSK 346 (403)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHTC--SCHHHHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 46677777776654 445556666666666665544 468899998888733 3444455566666777776666555
Q ss_pred hcCCcchHhhHHHHHHHhC
Q 004389 730 QHQQPCFLYLSSEVIKVVF 748 (757)
Q Consensus 730 ~~~~~~~l~~~~~~i~~f~ 748 (757)
.|=....-.++..+...|.
T Consensus 347 ~HWn~~v~~l~~~vlk~l~ 365 (403)
T 3fga_B 347 THWNKTIHGLIYNALKLFM 365 (403)
T ss_dssp CCSCHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHH
Confidence 4444555556666655553
No 103
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.30 E-value=58 Score=33.17 Aligned_cols=83 Identities=7% Similarity=0.104 Sum_probs=51.8
Q ss_pred hhHHHHHHHHhhcccCccccccHHHHHhhcCC-C-CChHHHHHHHHHHHHhhHHHHhhCCCCchhHHHHHHHHHhccCCC
Q 004389 470 AEAALFCIRAISTYVSVVEAEVMPQVMALLPK-L-PQQPQLLQTVCLTIGAYSKWFDAASSDPSILASVLSILTSGMSTS 547 (757)
Q Consensus 470 ~Ea~l~~l~~ia~~~~~~~~~~l~~l~~~l~~-l-~~~~~l~~t~~~~ig~~~~~l~~~~~~~~~l~~~l~~l~~~l~~~ 547 (757)
+=.|+..++.|.+. ++++.+...+.+ + ..||.||++|+.++.+. +..+|+ .....++-+...+.+.
T Consensus 121 R~lALRtL~~I~~~------~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL---~~~~pe---~v~~~~~~l~~ll~d~ 188 (355)
T 3tjz_B 121 RGPAVRALCQITDS------TMLQAIERYMKQAIVDKVPSVSSSALVSSLHL---LKCSFD---VVKRWVNEAQEAASSD 188 (355)
T ss_dssp HHHHHHHHHHHCCT------TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---TTTCHH---HHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCH------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---hccCHH---HHHHHHHHHHHHhcCC
Confidence 34566666666433 334445444431 2 34899999999987644 455564 6666666666667654
Q ss_pred h-HHHHHHHHHHHHHHHH
Q 004389 548 E-DTAAAAALAFRHICDD 564 (757)
Q Consensus 548 ~-~v~~~Aa~al~~l~~~ 564 (757)
+ .|..+|..++..+++.
T Consensus 189 n~~V~~~Al~lL~ei~~~ 206 (355)
T 3tjz_B 189 NIMVQYHALGLLYHVRKN 206 (355)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhh
Confidence 4 3777777777777754
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=23.08 E-value=3.8e+02 Score=24.98 Aligned_cols=77 Identities=5% Similarity=0.074 Sum_probs=48.2
Q ss_pred HHHHHHHHhccCCCh-HHHHHHHHHHHHHHHHhhhhhcCC--HHHHHHHHHHHhhCcCCCCCChhhHHHHHHHHHHHHhc
Q 004389 534 ASVLSILTSGMSTSE-DTAAAAALAFRHICDDCRKKLCGY--LDGLYNVYRTAVNGEGSLKVSAEDSLHLVEALSMVITE 610 (757)
Q Consensus 534 ~~~l~~l~~~l~~~~-~v~~~Aa~al~~l~~~~~~~l~p~--l~~ll~~~~~l~~~~~~~~l~~~~~~~l~eai~~vi~~ 610 (757)
..++..|.+-+.+++ .++.+|-..+..+.+.|+..+... -..+++.+..++.. ..+.+.+.++++-|-.-..+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~----~~~~~Vk~kil~li~~W~~~ 119 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKR----QVEVNVRNKILYLIQAWAHA 119 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHHHH
Confidence 455555655554432 499999999999999998754421 23344555555532 24567778888777766666
Q ss_pred CChH
Q 004389 611 LPQV 614 (757)
Q Consensus 611 ~~~e 614 (757)
++.+
T Consensus 120 f~~~ 123 (226)
T 3zyq_A 120 FRNE 123 (226)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 6544
Done!