BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004390
(757 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From
Streptococcus Pneumoniae
pdb|2BE3|B Chain B, Structure Of A Gtp Pyrophosphokinase Family Protein From
Streptococcus Pneumoniae
Length = 226
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 595 KAVEDLR-QLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLE--GERAMTYLTPEAKN 651
+AV +L+ +L+GI YR NK P+ +V+G ++P++++ E R +TY T E +
Sbjct: 17 QAVGELKIKLRGIRKQYRKQNKHSPIE---FVTGRVKPIESIKEKXARRGITYATLE--H 71
Query: 652 ELLLDAATQITSRYHELAAELISVARKTE 680
+L A ++ ++ + E++ + K +
Sbjct: 72 DLQDIAGLRVXVQFVDDVKEVVDILHKRQ 100
>pdb|1VSY|5 Chain 5, Proteasome Activator Complex
pdb|1VSY|8 Chain 8, Proteasome Activator Complex
pdb|3L5Q|6 Chain 6, Proteasome Activator Complex
pdb|3L5Q|8 Chain 8, Proteasome Activator Complex
Length = 997
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 532 IIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDA 591
++H N A+++ L ++QL +S ++ + +++ K L VVIN I+ +
Sbjct: 119 LLHSTNRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPS 178
Query: 592 LVEKAVEDLRQLK 604
L EKA++D +K
Sbjct: 179 L-EKAIKDHDYMK 190
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 664 RYHE---LAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDT---DKICMQLFL 717
RYHE AA LI+ E+S L +R + G S V ++ C Q+ +
Sbjct: 365 RYHESLMTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQKYFEEYCFQIVV 424
Query: 718 DIQEYGRSLAALGVQAADIPPYRSLW 743
DI E + LA+ + P +W
Sbjct: 425 DINELPKELASKFTSGKEEPIVLPIW 450
>pdb|2DU2|A Chain A, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|B Chain B, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|C Chain C, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2DU2|D Chain D, Crystal Structure Analysis Of The L-Lactate Oxidase
pdb|2E77|A Chain A, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|B Chain B, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|C Chain C, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2E77|D Chain D, Crystal Structure Of L-Lactate Oxidase With Pyruvate
Complex
pdb|2ZFA|A Chain A, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
pdb|2ZFA|B Chain B, Structure Of Lactate Oxidase At Ph4.5 From Aerococcus
Viridans
Length = 374
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 257 QNANVIYNCLRAYAAID--NTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDE 310
N ++ YN ID NT + EE K++PHG +AGASGDE
Sbjct: 2 NNNDIEYNAPSEIKYIDVVNTYDLEE---------EASKVVPHGGFNYIAGASGDE 48
>pdb|2J6X|A Chain A, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|B Chain B, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|C Chain C, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|D Chain D, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|E Chain E, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|F Chain F, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|G Chain G, The Crystal Structure Of Lactate Oxidase
pdb|2J6X|H Chain H, The Crystal Structure Of Lactate Oxidase
Length = 374
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 257 QNANVIYNCLRAYAAID--NTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDE 310
N ++ YN ID NT + EE K++PHG +AGASGDE
Sbjct: 2 NNNDIEYNAPSEIKYIDVVNTYDLEE---------EASKVVPHGGFNYIAGASGDE 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,336,755
Number of Sequences: 62578
Number of extensions: 711160
Number of successful extensions: 1857
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1854
Number of HSP's gapped (non-prelim): 11
length of query: 757
length of database: 14,973,337
effective HSP length: 106
effective length of query: 651
effective length of database: 8,340,069
effective search space: 5429384919
effective search space used: 5429384919
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)