BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004390
(757 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921L5|COG2_MOUSE Conserved oligomeric Golgi complex subunit 2 OS=Mus musculus
GN=Cog2 PE=2 SV=2
Length = 731
Score = 303 bits (776), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 207/751 (27%), Positives = 369/751 (49%), Gaps = 65/751 (8%)
Query: 21 PADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDY 80
P L F + F+ +FD + ++S+ R V E LR +L+ + L +++LIN+DY
Sbjct: 9 PTGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68
Query: 81 ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140
ADFVNLST LV +D A+ ++ PL +LRE++ R ++ ++A+ + ++ + +
Sbjct: 69 ADFVNLSTNLVGMDRALNQLSVPLGQLREEVLSLRSSVSEGILAVDERMSKQEDIRKKKM 128
Query: 141 VLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRET 200
+ L+ V K+EK++ N + K +SS P+ G
Sbjct: 129 SVLRLIQVIRSVEKIEKIL---------------NSQSSKDVSSQEASSPLLTG------ 167
Query: 201 QSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNAN 260
+LERIA+E N+L+F+ ++ +P ++ + RI + +L SL + GL+ + +
Sbjct: 168 --QVLERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVD 225
Query: 261 VIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQ 320
++ +CLR YA ID T++AE + +V P + ++I E + L+ Y ++ +
Sbjct: 226 IVRHCLRTYATIDKTQDAEALVGQVLVKPYVNEVI----VEQFVESHPSSLQLMYNKLLE 281
Query: 321 CVEKDCKFLLDI-----SSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFL 375
V C+ L ++ SS + + + +DFL NS+ E++ +++ P F+PG P F
Sbjct: 282 FVPHHCRLLREVTGGAVSSEKGTIVPGYDFLVNSVWPEIVRGLEEKLPSLFNPGDPDAFH 341
Query: 376 RNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSAL 435
+ Y S+DF+ E C S+++V + RA Y F +WN+ VYF +RF+E+AG+L++AL
Sbjct: 342 QKYTVSMDFVQRFERQCGSQASVKRLRAHPAYHNFSNKWNLPVYFQIRFREVAGSLEAAL 401
Query: 436 TAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSR 495
T ++ G+ L + S+ CW ++FL + + RL+LQ+L+R
Sbjct: 402 TDGL------EDAPAGSPYCLLASHRTWI--SLGKCWSDEMFLPLLAHRLWRLTLQILAR 453
Query: 496 YSNWLSSGLAARSSGHASFNPGNEWAISAAPDD------------------FIYIIHDIN 537
+S ++S S ++ S P + +Y++ D+
Sbjct: 454 FSVFVSELSVRPVSNESAKETKKPLTGSKDPSEDQGSHASEASAASISSTQLVYVVSDLG 513
Query: 538 CLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAV 597
L E D L V Q L + + ++ + +LS+ +P + + IV L E
Sbjct: 514 RL-QEWLPDLLETVKQKLEMIGFKNFSSISAALEDSQSALSAHVPALSSRIVQDLSESCF 572
Query: 598 EDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDA 657
L+ + YR TNK +P S YV L+PL L G + P L +A
Sbjct: 573 SYLKSALEVPRLYRRTNKEVPSTASSYVDSALKPLYQLQSGHG--DKVQPAVMQSWLQEA 630
Query: 658 ATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDH--NVSDTDKICMQL 715
+ T RY E +++++ +K E SL +++Q RR+ A++ VS +SD DKI +QL
Sbjct: 631 LSDSTHRYFETVSDVLNSVKKMEESLKRLKQA--RRSPATNPVSSSGGGMSDDDKIRLQL 688
Query: 716 FLDIQEYGRSLAALGVQAADIPPYRSLWQCV 746
LD++ G + +G+Q +DI + +L + V
Sbjct: 689 ALDVEHLGEQIQRMGLQTSDIKSFPALMELV 719
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens
GN=COG2 PE=1 SV=1
Length = 738
Score = 300 bits (768), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 210/766 (27%), Positives = 376/766 (49%), Gaps = 74/766 (9%)
Query: 21 PADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDY 80
P L F + F+ +FD + ++S+ R V E LR +L+ + L +++LIN+DY
Sbjct: 9 PKGPDTLCFDKDEFMKEDFDVDHFVSDCRKRVQLEELRDDLELYYKLLKTAMVELINKDY 68
Query: 81 ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140
ADFVNLST LV +D A+ ++ PL +LRE++ R ++ + A+ + ++ + +
Sbjct: 69 ADFVNLSTNLVGMDKALNQLSVPLGQLREEVLSLRSSVSEGIRAVDERMSKQEDIRKKKM 128
Query: 141 VLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRET 200
+ L+ V K+EK++ N + K S+ P+ G
Sbjct: 129 CVLRLIQVIRSVEKIEKIL---------------NSQSSKETSALEASSPLLTG------ 167
Query: 201 QSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNAN 260
+LERIA+E N+L+F+ ++ +P ++ + RI + +L SL + GL+ + +
Sbjct: 168 --QILERIATEFNQLQFHAVQSKGMPLLDKVRPRIAGITAMLQQSLEGLLLEGLQTSDVD 225
Query: 261 VIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQ 320
+I +CLR YA ID TR+AE + +V P + ++I E + + L+ Y ++ +
Sbjct: 226 IIRHCLRTYATIDKTRDAEALVGQVLVKPYIDEVI----IEQFVESHPNGLQVMYNKLLE 281
Query: 321 CVEKDCKFLLD-----ISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFL 375
V C+ L + ISS + + + +DFL NS+ +++ +++ P F+PG P F
Sbjct: 282 FVPHHCRLLREVTGGAISSEKGNTVPGYDFLVNSVWPQIVQGLEEKLPSLFNPGNPDAFH 341
Query: 376 RNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAGALDSAL 435
Y S+DF+ LE C S+++V + RA Y F K+WN+ VYF +RF+EIAG+L++AL
Sbjct: 342 EKYTISMDFVRRLERQCGSQASVKRLRAHPAYHSFNKKWNLPVYFQIRFREIAGSLEAAL 401
Query: 436 T-AASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLS 494
T AP ++ L S S++ CW ++FL + RL+LQ+L+
Sbjct: 402 TDVLEDAPAES---------PYCLLASHRTWSSLRRCWSDEMFLPLLVHRLWRLTLQILA 452
Query: 495 RYSNWLSSGLAAR----------------SSGHASFNPGNEWAISAAPDD---------- 528
RYS +++ L+ R S S GN + P +
Sbjct: 453 RYSVFVNE-LSLRPISNESPKEIKKPLVTGSKEPSITQGNTEDQGSGPSETKPVVSISRT 511
Query: 529 -FIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINT 587
+Y++ D++ L ++ + L + L + + ++ + S S+ +P + +
Sbjct: 512 QLVYVVADLDKLQEQLP-ELLEIIKPKLEMIGFKNFSSISAALEDSQSSFSACVPSLSSK 570
Query: 588 IVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTP 647
I+ L + L+ + YR TNK +P S YV L+PL L G + L
Sbjct: 571 IIQDLSDSCFGFLKSALEVPRLYRRTNKEVPTTASSYVDSALKPLFQLQSGHK--DKLKQ 628
Query: 648 EAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSD 707
+ L ++ T +Y+E +++++ +K E SL +++Q A++ A+ +SD
Sbjct: 629 AIIQQWLEGTLSESTHKYYETVSDVLNSVKKMEESLKRLKQ-ARKTTPANPVGPSGGMSD 687
Query: 708 TDKICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPSDRQS 753
DKI +QL LD++ G + LG+QA+DI + +L + VA + Q+
Sbjct: 688 DDKIRLQLALDVEYLGEQIQKLGLQASDIKSFSALAELVAAAKDQA 733
>sp|Q9VF78|COG2_DROME Conserved oligomeric Golgi complex subunit 2 OS=Drosophila
melanogaster GN=ldlCp PE=2 SV=1
Length = 710
Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 201/758 (26%), Positives = 336/758 (44%), Gaps = 76/758 (10%)
Query: 9 PPPRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSL 68
P +SA + + L F N F+ NF + ++ + R E LR L +L L
Sbjct: 4 PVKKSAHLTAGSTSTAEKLCFDKNEFMKANFSVDEFLHKNRNAPSLEQLRDNLGLYLKGL 63
Query: 69 NHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNG 128
+IDLIN DYADFVNLS LV +D + ++ PL + R I+ G ++ ++ L+
Sbjct: 64 RAAMIDLINEDYADFVNLSANLVGLDQNIKTIQQPLEQFRSDIESIHGLIDENVTELRAQ 123
Query: 129 LKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTF 188
L+++ + + L+ L + ++K++ LI +RK
Sbjct: 124 LEEKRQLREFKRGLQSLKKVYETINKLQDLI------------------DRKLSGE---- 161
Query: 189 QPVENGTNVRETQSMLLERIASEMNRLKFYIAHA-QNLPFIENMEKRIKSASLLLDASLG 247
QP+ +++ LER A ++ +LKF+ H ++L + + +I+ L L
Sbjct: 162 QPI---------KAVDLERAALDLIQLKFHEKHCFKHLS--PDHQGKIQQLEEQLHQHLR 210
Query: 248 HCFVHGLEHQNANV---IYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALA 304
F L + + CLR Y ++ AE F VVAP M +I G +
Sbjct: 211 RFFNDALSQARNSAPESLERCLRIYITLNACDQAECAFREDVVAPYMTGVI--GEQQLQN 268
Query: 305 GASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPG 364
G L Y +I + LL ++ + F+F+ NS +V + ++
Sbjct: 269 SPQG--LAGIYSKILNFISLHMTDLLRLTLYSDK-FPGFNFVVNSYWSDVETRLELHMNS 325
Query: 365 AFSPGRPTQFLRNYKSSLDFLAYLEGY--CPSRSAVAKFRAEAIYVEFMKQWNVGVYFSL 422
F+PG F YK + DFL +E C AV +R F +WN+ VYF +
Sbjct: 326 IFAPGNSEVFYVKYKCTRDFLGKIEELLTCSGEQAVTFYRQHKQTKSFEARWNLPVYFQI 385
Query: 423 RFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSV--TLLDSMKSCWRQDVFLLP 480
FQEIAG + A L PV +S + N K S ++M CW + V+L
Sbjct: 386 CFQEIAGKFE-----AQLEPVLQEDSLKDNLTDSDYKISAFNAAKEAMTRCWAEGVYLPE 440
Query: 481 CSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIH-DINCL 539
KF +L++Q++ R S W++ + + G+ ++ + + +H DI L
Sbjct: 441 VFPKFYKLNVQVVLRLSRWITDAITQ--------SKGSNFSKPYTRNQLLIALHADIRKL 492
Query: 540 ATEVSGDYLTHVLQLL------SSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALV 593
+L + QL+ C+ D++ +S+ +L + L + T+V+ L+
Sbjct: 493 DA-----HLPELQQLIIKSVPVEQCTKIFSDVLAKSMSCLADTLGAHLTNIQKTLVELLI 547
Query: 594 -EKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLE-GERAMTYLTPEAKN 651
E E++RQ+ + YR TN+ +P R S YV +LRPLK + E + L E
Sbjct: 548 GECETENVRQVNDLPRLYRKTNREVPTRCSSYVEQMLRPLKAFAQQNESQLGTLVVE--- 604
Query: 652 ELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKI 711
++L + A+ IT Y + +++++ +KTE SL ++R A S S +SD DKI
Sbjct: 605 QILAEVASHITKAYFNVVSDVLTSVQKTEESLRRLRNVKSGGAATVSTGSSAVMSDDDKI 664
Query: 712 CMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAPS 749
+QL +D+ + + L L QA I L V S
Sbjct: 665 RVQLRVDVTSWRQELCKLNFQATQIDKLVELTNMVEDS 702
>sp|Q54UC2|COG2_DICDI Conserved oligomeric Golgi complex subunit 2 OS=Dictyostelium
discoideum GN=cog2 PE=3 SV=1
Length = 904
Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 120/458 (26%), Positives = 215/458 (46%), Gaps = 59/458 (12%)
Query: 345 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLE-GYCPSRSAVAKFRA 403
F++ S+L E+ ++ K F+ G P F +NY + +F+ +E + ++ + +FR
Sbjct: 442 FISQSVLPEIDESLGFFK-QIFATGIPDLFYKNYYLTFNFIQSIEVNFLTNKELLTQFRQ 500
Query: 404 EAIYVEFMKQWNVGVYFSLRFQEIAGALD---------SALTAASLAPVQNSNSNQGNSQ 454
+ Y K+WN VYF L F IA + LT + N+N+N N+
Sbjct: 501 SSSYSSLWKKWNFAVYFQLCFTNIAQHFEFNYLRIPLFDQLTLPTNNITNNNNNNNENNN 560
Query: 455 ALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGL---------- 504
LK + L SM CW F+ S KF +L LQL++RY ++S L
Sbjct: 561 EFYLKSTDGLRLSMDKCWSNSNFIFDLSSKFFKLFLQLIARYDTFISDTLIPLELELQQQ 620
Query: 505 -------AARSSGHASFNPG---------------NEWAISAA---------PDDFIYII 533
+ N G N+ IS++ P++FIYII
Sbjct: 621 LQQQQLQQQQQQQQQQQNIGDSVIKITPKSPPSLSNQSPISSSTTLNNKQSSPENFIYII 680
Query: 534 HDINCLATEVSGDYLTHVLQLLSSCSS--EVLDLVKQSILEGGKSLSSMLPVVINTIVDA 591
DI + +++S +Y +++ + + + E+L+L+ ILE K+L ++P + I +
Sbjct: 681 SDIYKIKSKISTNYKELIIKTIGNHQNQHEILNLINDGILESCKTLEQLIPRISIIIENH 740
Query: 592 LVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE-RAMTYLTPEAK 650
L+ K +E + + + +TYRMTNKP+P + S YVS ++ PL+ L+ + ++ ++ PE K
Sbjct: 741 LISKCLEPIEIISTLRSTYRMTNKPVPTKPSIYVSNLISPLEILINNKASSLHFIPPEIK 800
Query: 651 NELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDK 710
+ T +T + A LI ++ + K+ +++ ++ S ++SD DK
Sbjct: 801 LNWAISVLTPVTESFKNAATNLIQSVTQSNDIINKMV----KKSKPTTTTSGGDMSDMDK 856
Query: 711 ICMQLFLDIQEYGRSLAALGVQAADIPPYRSLWQCVAP 748
I +QL+LD+ ++G + G+ P+ L V P
Sbjct: 857 ISLQLYLDVDKFGLYIQKFGINLLTFEPFLGLKSIVEP 894
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 147/341 (43%), Gaps = 35/341 (10%)
Query: 26 PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVN 85
PL F ++F S F+ + +IS+ R V E+++ +L+ + L+ ELI+LIN++Y F +
Sbjct: 52 PLCFSKDVFTSNTFEVDQFISDCRKRVNLESVQKDLREYSKHLDSELIELINKEYQSFFS 111
Query: 86 LSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELL 145
LST LV D + ++ +I F + +++ L ++ +++L+L
Sbjct: 112 LSTSLVGFDTILNEFSISQSSIKSEIKSFNNEIVKVRGLVEDKLNEKKSIEQKKKLLQLY 171
Query: 146 LDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLL 205
+ ++ + L +L L +DF +K ++ E N + +L+
Sbjct: 172 ISISETLNNMNHLFDQLYQL-THPNDF------KKINNNNNNHTNNETNINDGDVLELLI 224
Query: 206 ERIASEM------------NRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVH- 252
+RI++ + LKF I + +L ++ K + + SL F++
Sbjct: 225 DRISNSFYQIQNQMSSLTNDELKFNIFQSLSLKIMDLSNKIEEKVEPIFKESLKR-FINV 283
Query: 253 ----------GLEHQNA---NVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGP 299
E QN ++ CL+ + ID ++F +V P + +I+
Sbjct: 284 NNNNKEIVDDNNEKQNKYDERILLVCLKTFQTIDKLNVPYKLFKTLIVKPRLAQIVSLRN 343
Query: 300 SEALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGL 340
E + ++ D L Y I + ++ C DIS+ N+ L
Sbjct: 344 LE-INKSTTDGLSQIYNSIIEFLKNQCSSFFDISNLINNNL 383
>sp|Q21444|COG2_CAEEL Conserved oligomeric Golgi complex subunit 2 OS=Caenorhabditis
elegans GN=cogc-2 PE=2 SV=1
Length = 681
Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/393 (19%), Positives = 152/393 (38%), Gaps = 35/393 (8%)
Query: 345 FLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAE 404
FL ++L +L+ I K P F + + +F+ R+ + R
Sbjct: 292 FLDETLLTFILTFIDKCMGAVAVPSDTRLFHECFLLTQEFIDNWPSSHTCRAMLKSIR-- 349
Query: 405 AIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTL 464
++N+ VYF L D ++ A + S N+ N+ L S +
Sbjct: 350 -------DKFNLLVYFKLETHRFGKQCDQLMSPEMFAEPETS-ENRENTPQLHCGVSRAI 401
Query: 465 LDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISA 524
+ +++ W DV+L P DK +L+LL ++ +W +++ + +W
Sbjct: 402 ITAIEHVWSDDVYLPPIVDKLWDFTLKLLLKHFSW------SQTMKNYFMEEKRDWT--- 452
Query: 525 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVV 584
+ + D L V L + + + Q + + G+S+ S+ +
Sbjct: 453 ---SMVTLRSDTGNLHQLVFDFALESIWGKFHDITVDTAPF-GQCLTKHGRSIDSLCVQI 508
Query: 585 INTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTY 644
++I++ E +++ Q+ + YR T K P HS YV + ++ L E +
Sbjct: 509 DDSIIEMFSEVLHQEIAQVSDVPKQYRWTKKSPPTTHSKYVVTAIEMVENLKEKLCCEEH 568
Query: 645 -LTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDH 703
T E ++ L A + E++ T SSL + ++ +G++
Sbjct: 569 PHTDEIVRKVNLSAFNYFVGK----GNEVLDSVEATGSSLSRFKRKTTTDSGST------ 618
Query: 704 NVSDTDKICMQLFLDIQEYGRSLAALGVQAADI 736
V+D DKI Q++ D + + L AD+
Sbjct: 619 -VTDDDKIKQQIYHDAKYFLSYAENLVFSQADL 650
Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 17 LFSDP----ADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHEL 72
+F+ P D L F F +F+ E +++ R +T++ +L+ +L S+ + +
Sbjct: 10 MFASPNTFYIDESKLCFNKTHFNREDFNVERFMNLARQKSDLKTIQQDLRLYLKSVQNSM 69
Query: 73 IDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR 132
I+LIN DYADFV+LS+ LV + ++ ++ + + D F+ + S V + ++Q+
Sbjct: 70 IELINDDYADFVHLSSNLVSLQDSLNKIEQDINRI---WDEFKESTRES-VGMAERIEQK 125
Query: 133 -SEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGS 170
E S RE + D + + +EKL + L P S
Sbjct: 126 CDELCSNREKQIEIRDRIYFLVAIEKLSEMLLHPPRKCS 164
>sp|O59705|COG2_SCHPO Conserved oligomeric Golgi complex subunit 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cog2 PE=3 SV=2
Length = 191
Score = 40.0 bits (92), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 49 RTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELR 108
+ F+ + L +EL +N+EL+ L+ +Y DFV+L +++ + V + + +
Sbjct: 42 KRFLGLDGLVNELSRLFEQVNNELMLLVKDNYQDFVHLGSRMKSGNTKVSTLISSIHRSE 101
Query: 109 EKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE--LLLD 147
E++ + +L G +QN LK + + + + + LLLD
Sbjct: 102 EQLKNSKQSLIGHSTEIQNNLKHKQDVENEKLIASNLLLLD 142
>sp|Q57886|RIO1_METJA RIO-type serine/threonine-protein kinase Rio1 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rio1 PE=3 SV=1
Length = 290
Score = 34.7 bits (78), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 306 ASGDELESDYEQIKQCVEKDCKFLLDISSA-----ENSGLHVFDFLANSILKEVLSAIQK 360
+ +E + D E K+ +EK+ KFL D+ +A + + + +F LA L E + +
Sbjct: 25 SEKEEFQLDREYQKEILEKERKFLEDLKTANEVFDKRTLMTLFSLLAGKHLTEYIGIVNS 84
Query: 361 GKPGAFSPGRPTQFLRNYK----SSLDFLA---YLEG 390
GK R +F R K ++ DF Y++G
Sbjct: 85 GKEAVVFKARKGKFYRAVKVYRVATCDFKTMSKYIQG 121
>sp|A4IJP9|ROCA_GEOTN 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=rocA PE=3 SV=1
Length = 515
Score = 34.7 bits (78), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 630 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 678
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q5L3K8|ROCA_GEOKA 1-pyrroline-5-carboxylate dehydrogenase OS=Geobacillus kaustophilus
(strain HTA426) GN=rocA PE=3 SV=1
Length = 515
Score = 34.7 bits (78), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 630 RPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARK 678
R +KT E R + +PEA+ ++L AA + R HE +A L+ A K
Sbjct: 77 RAMKTADEAFRTWSRTSPEARADILFRAAAIVRRRKHEFSAWLVKEAGK 125
>sp|Q601T8|DNLJ_MYCH2 DNA ligase OS=Mycoplasma hyopneumoniae (strain 232) GN=ligA PE=3
SV=1
Length = 692
Score = 33.1 bits (74), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 220 AHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAE 279
++ +NL N E IK A ++ +G VH N +++ NC + + + N+ +
Sbjct: 373 SYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELVNSESGL 430
Query: 280 EIFCNTVVAP--LMQKIIPHGPSEAL 303
+ FC P ++QKI+ AL
Sbjct: 431 DQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q4A899|DNLJ_MYCH7 DNA ligase OS=Mycoplasma hyopneumoniae (strain 7448) GN=ligA PE=3
SV=2
Length = 692
Score = 33.1 bits (74), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 220 AHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAE 279
++ +NL N E IK A ++ +G VH N +++ NC + + + N+ +
Sbjct: 373 SYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELVNSESGL 430
Query: 280 EIFCNTVVAP--LMQKIIPHGPSEAL 303
+ FC P ++QKI+ AL
Sbjct: 431 DQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q4AA72|DNLJ_MYCHJ DNA ligase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 /
NCTC 10110) GN=ligA PE=3 SV=2
Length = 692
Score = 33.1 bits (74), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 220 AHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAE 279
++ +NL N E IK A ++ +G VH N +++ NC + + + N+ +
Sbjct: 373 SYIENLKLNLNTEVYIKKAGEIIPQIIGS--VHNYPKTNFSIVKNCPKCNSELVNSESGL 430
Query: 280 EIFCNTVVAP--LMQKIIPHGPSEAL 303
+ FC P ++QKI+ AL
Sbjct: 431 DQFCQNQFCPEIILQKIVHFCSKNAL 456
>sp|Q6NUC6|RC3H1_XENLA Probable E3 ubiquitin-protein ligase Roquin OS=Xenopus laevis
GN=rc3h1 PE=2 SV=1
Length = 1114
Score = 33.1 bits (74), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 253 GLEHQNANVIYNCL-RAYAAIDNTR---NAEEIFCNTVVAPLMQKIIPHGPSEALAGASG 308
G H + N L R D T + E + N+ + L+ +P L G G
Sbjct: 32 GCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSALLQLVGAQVPEQQQITLCGGCG 91
Query: 309 DELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLS 356
E YE+ ++CVE+ +L +S+A GL NS + VLS
Sbjct: 92 AEDTKHYEEARKCVEELALYLKPLSTARGVGL-------NSTTQSVLS 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 258,330,634
Number of Sequences: 539616
Number of extensions: 10238939
Number of successful extensions: 31312
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 31258
Number of HSP's gapped (non-prelim): 59
length of query: 757
length of database: 191,569,459
effective HSP length: 125
effective length of query: 632
effective length of database: 124,117,459
effective search space: 78442234088
effective search space used: 78442234088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)