Query 004390
Match_columns 757
No_of_seqs 167 out of 233
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 22:37:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2307 Low density lipoprotei 100.0 1E-162 3E-167 1303.7 63.8 695 11-755 5-702 (705)
2 PF12022 DUF3510: Domain of un 100.0 3.7E-39 8E-44 301.5 12.7 125 589-719 1-125 (125)
3 PF06148 COG2: COG (conserved 100.0 5.3E-33 1.2E-37 264.0 2.6 133 27-159 1-133 (133)
4 PF10191 COG7: Golgi complex c 99.5 5.8E-10 1.3E-14 134.2 48.2 304 32-394 3-335 (766)
5 PF10475 DUF2450: Protein of u 98.6 1.9E-05 4.1E-10 85.2 27.2 216 32-288 6-226 (291)
6 PF06248 Zw10: Centromere/kine 98.5 0.00011 2.3E-09 87.1 30.6 321 52-426 10-385 (593)
7 PF10392 COG5: Golgi transport 98.3 2.3E-05 5E-10 74.6 14.6 119 32-150 1-127 (132)
8 PF08700 Vps51: Vps51/Vps67; 98.1 1.7E-05 3.7E-10 69.6 8.3 81 34-114 1-84 (87)
9 KOG2180 Late Golgi protein sor 97.7 0.21 4.5E-06 58.5 42.0 537 32-640 12-598 (793)
10 PF04100 Vps53_N: Vps53-like, 97.6 0.018 3.8E-07 64.7 24.4 173 37-254 2-185 (383)
11 PF10474 DUF2451: Protein of u 97.3 0.0088 1.9E-07 62.5 17.0 126 570-729 40-169 (234)
12 KOG2211 Predicted Golgi transp 97.1 0.23 5.1E-06 57.6 25.9 217 31-286 50-268 (797)
13 PF07393 Sec10: Exocyst comple 97.0 1.4 3E-05 53.8 48.7 485 206-745 75-664 (710)
14 KOG2346 Uncharacterized conser 96.7 0.0093 2E-07 66.5 10.2 98 20-119 16-116 (636)
15 PF04048 Sec8_exocyst: Sec8 ex 96.4 0.062 1.3E-06 51.8 13.2 94 34-127 16-111 (142)
16 KOG4182 Uncharacterized conser 95.9 1.4 3.1E-05 49.4 21.6 125 591-751 673-816 (828)
17 PF04091 Sec15: Exocyst comple 95.4 0.34 7.4E-06 52.9 14.9 180 525-747 91-275 (311)
18 PF15469 Sec5: Exocyst complex 95.0 2.6 5.6E-05 42.2 18.7 165 70-277 2-173 (182)
19 PF04124 Dor1: Dor1-like famil 92.6 20 0.00042 39.7 22.2 91 52-149 7-100 (338)
20 KOG2115 Vacuolar sorting prote 92.5 33 0.00071 42.1 27.2 130 31-160 199-347 (951)
21 PF14923 CCDC142: Coiled-coil 82.8 17 0.00037 41.5 12.9 83 583-668 231-319 (450)
22 smart00762 Cog4 COG4 transport 77.1 20 0.00043 39.5 11.0 51 236-286 2-52 (324)
23 KOG2307 Low density lipoprotei 74.5 9.2 0.0002 44.2 7.5 101 54-165 59-159 (705)
24 PF04437 RINT1_TIP1: RINT-1 / 72.1 2E+02 0.0043 33.5 21.2 357 284-667 4-397 (494)
25 PF06046 Sec6: Exocyst complex 68.0 64 0.0014 38.1 13.3 163 525-730 314-476 (566)
26 KOG2069 Golgi transport comple 67.8 2.6E+02 0.0056 33.1 23.9 107 40-154 20-129 (581)
27 KOG2176 Exocyst complex, subun 67.3 3E+02 0.0066 33.7 46.0 550 53-668 45-673 (800)
28 KOG2347 Sec5 subunit of exocys 66.9 56 0.0012 40.0 12.0 109 33-144 165-281 (934)
29 smart00787 Spc7 Spc7 kinetocho 65.8 78 0.0017 34.7 12.2 22 50-71 138-159 (312)
30 KOG1961 Vacuolar sorting prote 64.6 25 0.00054 41.1 8.3 76 59-134 46-131 (683)
31 PF08317 Spc7: Spc7 kinetochor 59.0 1.3E+02 0.0028 33.1 12.6 36 50-85 143-184 (325)
32 PF04156 IncA: IncA protein; 56.6 2.1E+02 0.0045 28.5 12.8 66 55-124 94-159 (191)
33 PF07889 DUF1664: Protein of u 54.4 1.2E+02 0.0026 28.7 9.7 40 92-131 40-79 (126)
34 PF08318 COG4: COG4 transport 52.8 68 0.0015 35.4 9.2 53 236-288 2-54 (331)
35 PF10186 Atg14: UV radiation r 49.0 2.7E+02 0.0058 29.5 13.0 85 26-119 3-94 (302)
36 KOG2033 Low density lipoprotei 47.7 5.9E+02 0.013 30.9 41.3 80 616-727 638-717 (863)
37 PF10267 Tmemb_cc2: Predicted 46.1 4.3E+02 0.0092 30.1 14.1 19 221-239 299-318 (395)
38 PF10146 zf-C4H2: Zinc finger- 45.9 2.2E+02 0.0047 29.9 11.0 55 107-161 16-71 (230)
39 PF09033 DFF-C: DNA Fragmentat 43.1 8 0.00017 37.2 0.0 49 100-148 52-100 (164)
40 PF04129 Vps52: Vps52 / Sac2 f 42.3 6.3E+02 0.014 29.7 17.6 42 82-123 15-56 (508)
41 PF02050 FliJ: Flagellar FliJ 41.9 2E+02 0.0042 25.6 9.2 68 54-124 21-88 (123)
42 PF15290 Syntaphilin: Golgi-lo 41.2 1.5E+02 0.0033 31.7 8.9 104 40-160 55-166 (305)
43 TIGR00255 conserved hypothetic 40.5 5.1E+02 0.011 28.1 13.3 15 205-219 222-236 (291)
44 PF04048 Sec8_exocyst: Sec8 ex 39.5 1.6E+02 0.0035 28.3 8.4 75 50-124 41-115 (142)
45 PF08112 ATP-synt_E_2: ATP syn 39.4 78 0.0017 25.1 4.8 33 52-84 7-39 (56)
46 TIGR00606 rad50 rad50. This fa 39.0 4.2E+02 0.009 35.1 14.6 95 26-125 681-781 (1311)
47 PF06103 DUF948: Bacterial pro 37.3 2.4E+02 0.0051 24.6 8.5 31 94-124 25-55 (90)
48 PF09755 DUF2046: Uncharacteri 34.9 6.4E+02 0.014 27.6 18.9 87 57-143 107-198 (310)
49 PRK00286 xseA exodeoxyribonucl 34.6 7.4E+02 0.016 28.2 14.9 73 37-109 235-319 (438)
50 PF10241 KxDL: Uncharacterized 33.2 2.1E+02 0.0045 25.2 7.4 65 56-120 18-82 (88)
51 PF08385 DHC_N1: Dynein heavy 32.7 8.7E+02 0.019 28.4 15.2 188 54-284 236-453 (579)
52 PRK02224 chromosome segregatio 31.6 6E+02 0.013 31.8 14.0 60 60-119 624-684 (880)
53 PF04136 Sec34: Sec34-like fam 31.6 5E+02 0.011 25.4 16.7 68 93-160 19-86 (157)
54 PLN03242 diacylglycerol o-acyl 30.5 23 0.00049 40.1 1.0 21 403-423 299-319 (410)
55 TIGR03185 DNA_S_dndD DNA sulfu 30.3 5.6E+02 0.012 31.0 12.9 47 79-125 419-465 (650)
56 PF05377 FlaC_arch: Flagella a 29.9 1.4E+02 0.0031 24.1 5.1 30 93-122 5-34 (55)
57 PF05478 Prominin: Prominin; 29.3 1.2E+03 0.026 29.1 19.2 33 52-84 176-208 (806)
58 PRK11820 hypothetical protein; 29.2 7.7E+02 0.017 26.7 13.3 10 205-214 243-252 (288)
59 PF03114 BAR: BAR domain; Int 29.2 5.8E+02 0.012 25.3 11.6 26 51-76 39-64 (229)
60 PF04156 IncA: IncA protein; 29.0 5.8E+02 0.013 25.3 11.7 68 58-129 83-150 (191)
61 PF04728 LPP: Lipoprotein leuc 29.0 1E+02 0.0022 25.0 4.1 26 97-122 5-30 (56)
62 PF05363 Herpes_US12: Herpesvi 28.8 48 0.001 28.4 2.4 27 41-67 8-35 (86)
63 PRK03918 chromosome segregatio 28.8 6.6E+02 0.014 31.3 13.6 41 81-121 659-699 (880)
64 PF10158 LOH1CR12: Tumour supp 28.5 4.6E+02 0.0099 25.0 9.3 13 147-159 105-117 (131)
65 PLN02401 diacylglycerol o-acyl 28.3 26 0.00056 40.1 1.0 22 402-423 323-344 (446)
66 KOG0964 Structural maintenance 28.1 7.1E+02 0.015 31.5 12.7 105 57-164 395-502 (1200)
67 cd07356 HN_L-whirlin_R1_like F 28.1 2E+02 0.0043 24.7 5.9 43 255-297 17-66 (78)
68 PF12277 DUF3618: Protein of u 27.4 1.9E+02 0.0041 22.5 5.4 39 102-140 3-41 (49)
69 PF06466 PCAF_N: PCAF (P300/CB 26.8 4.6E+02 0.0099 27.9 9.7 69 353-421 145-221 (252)
70 PF04108 APG17: Autophagy prot 26.4 1E+03 0.022 27.2 16.9 17 279-295 353-369 (412)
71 PF07889 DUF1664: Protein of u 26.0 81 0.0018 29.9 3.7 33 88-120 68-100 (126)
72 PF04740 LXG: LXG domain of WX 25.8 6.8E+02 0.015 25.0 11.2 70 57-128 62-132 (204)
73 KOG2467 Glycine/serine hydroxy 25.7 32 0.0007 38.2 1.1 51 354-414 56-106 (477)
74 PRK11637 AmiB activator; Provi 25.1 6E+02 0.013 28.9 11.4 36 90-125 77-112 (428)
75 PHA02562 46 endonuclease subun 24.7 7.8E+02 0.017 28.8 12.6 23 51-73 301-323 (562)
76 PF05266 DUF724: Protein of un 23.9 4.2E+02 0.0091 26.9 8.7 43 33-75 80-122 (190)
77 PHA00442 host recBCD nuclease 23.9 1.2E+02 0.0026 24.3 3.6 39 711-751 16-58 (59)
78 PF06103 DUF948: Bacterial pro 23.9 4.8E+02 0.01 22.6 9.3 34 97-130 21-54 (90)
79 PF05701 WEMBL: Weak chloropla 23.8 5.5E+02 0.012 30.2 11.0 44 83-126 276-319 (522)
80 KOG1011 Neurotransmitter relea 23.3 1.9E+02 0.0042 34.4 6.6 74 565-639 876-949 (1283)
81 PF04740 LXG: LXG domain of WX 23.1 4.5E+02 0.0098 26.3 9.0 11 77-87 109-119 (204)
82 PRK07720 fliJ flagellar biosyn 23.0 6.6E+02 0.014 23.9 10.0 34 91-124 74-107 (146)
83 PRK06443 chorismate mutase; Va 22.8 93 0.002 31.1 3.6 28 50-81 3-30 (177)
84 COG3352 FlaC Putative archaeal 22.8 7.3E+02 0.016 24.3 10.9 59 68-126 41-103 (157)
85 PF03915 AIP3: Actin interacti 22.7 4.6E+02 0.0099 30.1 9.5 40 51-91 150-196 (424)
86 TIGR00606 rad50 rad50. This fa 22.5 1.9E+03 0.041 29.0 17.8 70 74-143 944-1025(1311)
87 COG3343 RpoE DNA-directed RNA 22.5 1.4E+02 0.003 29.8 4.6 67 41-112 19-92 (175)
88 KOG2129 Uncharacterized conser 22.3 1.2E+03 0.025 26.7 12.0 42 102-143 179-221 (552)
89 KOG3048 Molecular chaperone Pr 22.3 3.6E+02 0.0078 26.1 7.2 79 593-685 46-126 (153)
90 PF07200 Mod_r: Modifier of ru 22.3 5.5E+02 0.012 24.5 9.0 57 70-126 7-65 (150)
91 PF08581 Tup_N: Tup N-terminal 21.8 3.4E+02 0.0073 23.6 6.4 16 70-85 3-18 (79)
92 PF01627 Hpt: Hpt domain; Int 21.5 2.8E+02 0.006 23.1 6.1 44 54-97 3-46 (90)
93 KOG4552 Vitamin-D-receptor int 21.4 9.1E+02 0.02 24.9 12.0 24 64-87 19-43 (272)
94 cd07628 BAR_Atg24p The Bin/Amp 21.4 8.3E+02 0.018 24.4 10.7 11 124-134 101-111 (185)
95 PF10267 Tmemb_cc2: Predicted 21.4 1.2E+03 0.027 26.4 13.2 102 50-156 210-318 (395)
96 cd07590 BAR_Bin3 The Bin/Amphi 21.4 9.4E+02 0.02 25.1 11.4 27 44-70 13-43 (225)
97 KOG4797 Transcriptional regula 21.0 4.1E+02 0.0089 24.4 6.9 60 83-145 36-96 (123)
98 TIGR02957 SigX4 RNA polymerase 20.1 5.3E+02 0.012 27.4 9.2 120 268-432 14-135 (281)
No 1
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-162 Score=1303.67 Aligned_cols=695 Identities=38% Similarity=0.567 Sum_probs=628.2
Q ss_pred CCCCCcCCCCCCCCCCCccCcCCCCCCCCChHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCC
Q 004390 11 PRSATDLFSDPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKL 90 (757)
Q Consensus 11 ~~~~~~~~~~p~~~~~l~F~~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L 90 (757)
++|++..+..|+|+++|||||+.|++||||||.|++.+|.+++||+||+|||.|++.|+++||||||+|||||||||+||
T Consensus 5 k~sa~~~~g~~~d~~kLcFdk~eFmkedFdve~f~s~~R~~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnL 84 (705)
T KOG2307|consen 5 KTSAALPNGFYIDESKLCFDKTEFMKEDFDVERFMSLARQKVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNL 84 (705)
T ss_pred cccccCCCCCCCCccccccChhhhccccCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 56777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCC
Q 004390 91 VDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGS 170 (757)
Q Consensus 91 ~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~ 170 (757)
||+|++|++|++||+++|++|.+.|+.|++...++++++.+..++ |+.+..+++..+.+.++|+|...+.+.|.+|+
T Consensus 85 Vgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~---Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q 161 (705)
T KOG2307|consen 85 VGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSN---REKKIELLDLIYVLVAIEKLSKMLLSPPSKEQ 161 (705)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999998655555544 44455555566666777777666677676653
Q ss_pred CccchhhhhhccCCCCCCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHH
Q 004390 171 DFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCF 250 (757)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l 250 (757)
.. | ...|||+|.|+|||+||+++++++ ++.++++||+.++..|++.|+.+|
T Consensus 162 ~~---------------------~-------a~sLERiAlelnqlkf~a~h~k~~-l~p~~e~ria~~~~~L~qsl~~lf 212 (705)
T KOG2307|consen 162 QD---------------------G-------ATSLERIALELNQLKFHASHLKGS-LFPHSEERIAAEKIILSQSLAVLF 212 (705)
T ss_pred cc---------------------c-------cchHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHhhHHHHHHHHHHHHH
Confidence 30 1 113999999999999999999999 999999999999999999999999
Q ss_pred HHhhhhcChHHHHHHHHHHHHhcchhhHHHHHHHHhhHHHHhhhcCCCCcccccCCCcchHHHHHHHHHHHHH-hhhhHH
Q 004390 251 VHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVE-KDCKFL 329 (757)
Q Consensus 251 ~~~~~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~vV~P~l~~ii~~~~l~~~~~~~~~~L~~~y~~il~fv~-~~~~~l 329 (757)
.+++++ +.+.+.+|||+|++|+.++.||.+||..||+||+.++|++... .++|+||.++|++|++||. ++|..+
T Consensus 213 ~eglqs-a~~~l~nclriYatld~t~~ae~lfr~~vvapyi~evI~eq~~----e~sp~gl~~~ykqilefv~~h~c~ll 287 (705)
T KOG2307|consen 213 AEGLQS-AAGDLQNCLRIYATLDLTESAESLFRLLVVAPYIAEVINEQHD----ETSPSGLLKLYKQILEFVKKHRCTLL 287 (705)
T ss_pred HHHhhc-cHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhhhc----cCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999954 8899999999999999999999999999999999999999776 6899999999999999999 889999
Q ss_pred HHhhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh--hCCCHHHHHHHhhchhH
Q 004390 330 LDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG--YCPSRSAVAKFRAEAIY 407 (757)
Q Consensus 330 l~it~~~~s~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~--~c~S~~~v~~lR~~~~y 407 (757)
.+++....+|++|||||+||+|++|..+|++.||++|+||||++||+||++|++||++||+ .|+|+.+|++||+||.|
T Consensus 288 re~tssdk~g~~~fdFlvnS~l~~ilt~iek~mps~f~Pgnp~~F~ekyk~t~DFl~~le~~~tC~s~~avt~~Rah~~~ 367 (705)
T KOG2307|consen 288 REMTSSDKRGLPGFDFLVNSLLTFILTFIEKCMPSVFVPGNPRLFHEKYKLTQDFLDNLESSHTCRSMLAVTKFRAHAIC 367 (705)
T ss_pred HHhchhhcCCCchHHHHHHHHHHHHHHHHHHhcccccCCCCcHHHHHHHHHHHHHHHhccccCcCchHHHHHHHHhhhHH
Confidence 9999777778999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhhhccchhHHHHHHHHHHhHHHhhhhcccccccCCCCCCCCCcccchhhHHHHHHHHhhhcccCccccccchHHHH
Q 004390 408 VEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQDVFLLPCSDKFLR 487 (757)
Q Consensus 408 ~~f~~rWnLpVYFqlRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~Vfl~~L~~rFwk 487 (757)
++||+|||||||||||||||||++|++|+ ++.......+++.++..+|++.+|.++|+||++||+||||+|++.|||||
T Consensus 368 ~sF~kkwNl~VYFqlrfqeiag~ldaaLt-p~~~~d~l~d~~~Est~~l~l~as~a~~ealrrcWsddvylp~~vdKl~r 446 (705)
T KOG2307|consen 368 VSFMKKWNLPVYFQLRFQEIAGQLDAALT-PEMFADPLTDENRESTPQLHLGASRAIIEALRRCWSDDVYLPPIVDKLWR 446 (705)
T ss_pred HHHHHhcCcceeEeeeHHHHHHHHHHhcC-chhhcccccccccccCccchhhHhHHHHHHHHHHccccccchhhHHHHHH
Confidence 99999999999999999999999999998 54333333334445556899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHhhhhHHHHHHHhhccCChhhHHHHH
Q 004390 488 LSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVK 567 (757)
Q Consensus 488 LtLQllsRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~ 567 (757)
||||+++||+.|+.+ +.+.. +++.+ +| .+..+++++++|...+.+.+.+.++++|+++++..+....+.+.
T Consensus 447 ltlQlllRysrwisa-itns~----gs~~s-kp---~trtqlvyv~hdd~~llqevl~elle~I~~kl~~~~k~~sdv~a 517 (705)
T KOG2307|consen 447 LTLQLLLRYSRWISA-ITNSF----GSEKS-KP---ATRTQLVYVRHDDGNLLQEVLPELLESIWGKLHDITKVFSDVFA 517 (705)
T ss_pred HHHHHHHHHhHHHHH-HHhcc----CCCCC-CC---cchhheeeeecccchHHHHHhHHHHHHHHhhccchhhhhHHHHH
Confidence 999999999999984 43321 22211 33 45578999997776677777777999999999988866677778
Q ss_pred HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCH
Q 004390 568 QSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTP 647 (757)
Q Consensus 568 ~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~ 647 (757)
++|+.++.+|.+++|.+.+.||+.+++.|...|+||++||++||||||++||+||+||.++|+|+++|.++... .|.+
T Consensus 518 ~sle~~g~Sl~a~lp~i~ktIIe~lsd~~~~~lrqv~dvprlyR~TnKevPtthSsYVv~aLrpvkal~eg~k~--~L~q 595 (705)
T KOG2307|consen 518 QSLEKHGRSLDALLPQIDKTIIEMLSDVCHQELRQVSDVPRLYRWTNKEVPTTHSSYVVTALRPVKALKEGLKC--ELEQ 595 (705)
T ss_pred HHHHHhcccHHHHhhhHHHHHHHHHHHHHHHHHHHHhccHHHHHhccCCCCCcchHHHHHHHHHHHHHHHhhhh--hhcC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999876 7899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 004390 648 EAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLA 727 (757)
Q Consensus 648 ~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~ 727 (757)
.+.+||+.+|..++|.+|++.++|||++|+|||+||+|||+.+++++|+ ++.++++||||||||+||++||++|+.+++
T Consensus 596 ~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~-s~gss~~vSddDKir~QL~lDv~~~~s~~~ 674 (705)
T KOG2307|consen 596 PHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGS-SGGSSQTVSDDDKIRQQLYLDVKYFLSYAE 674 (705)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CCCCCCCcCcchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876665 556678899999999999999999999999
Q ss_pred hcCCCCCCCccHHHHHHhcccccccccc
Q 004390 728 ALGVQAADIPPYRSLWQCVAPSDRQSLI 755 (757)
Q Consensus 728 ~lgv~~~~~~~~~~L~~~V~~~~~~~~~ 755 (757)
+||+.+++|.+|++|.+++....++..+
T Consensus 675 kL~fqa~di~~~~~lvel~~~~~dsa~~ 702 (705)
T KOG2307|consen 675 KLVFQAADITGLQELVELFDKDADSAIV 702 (705)
T ss_pred HhcchHhhhhhHHHHHHHHHhhhhhhhh
Confidence 9999999999999999999887776544
No 2
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=100.00 E-value=3.7e-39 Score=301.54 Aligned_cols=125 Identities=47% Similarity=0.794 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004390 589 VDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHEL 668 (757)
Q Consensus 589 v~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~ 668 (757)
|+.|+++|+++|++|++||++|||||||+||+||+||++||+||+.|+++... .++++.+++|+.+|+++|+++|++.
T Consensus 1 v~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~--~~~~~~~~~~~~~v~~~v~~~y~~~ 78 (125)
T PF12022_consen 1 VQSLTERCVEPLKQVRSIPRQYRMTNKPVPTKPSPYVSSILRPLKSFLEEYSS--YLSPEIIEEWLQKVITEVTERYYEI 78 (125)
T ss_pred CHHHHHHHHHHHHHHhhhHHHhhccCCCCCCCccHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999998855 8999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHH
Q 004390 669 AAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDI 719 (757)
Q Consensus 669 v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv 719 (757)
++|||++|+||||||+||||++++++|++ ++++||+||||+||+|||
T Consensus 79 ~~evL~sv~KtEeSL~rlkk~~~~~~~~~----~~~~sD~dKIr~QL~LDV 125 (125)
T PF12022_consen 79 ASEVLTSVRKTEESLKRLKKRRKRTSGSS----SGGMSDDDKIRLQLYLDV 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccc----CCCCCcHHHHHHHHHccC
Confidence 99999999999999999999997543332 267999999999999997
No 3
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=99.97 E-value=5.3e-33 Score=264.02 Aligned_cols=133 Identities=38% Similarity=0.680 Sum_probs=47.8
Q ss_pred CccCcCCCCCCCCChHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHH
Q 004390 27 LWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLE 106 (757)
Q Consensus 27 l~F~~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~ 106 (757)
|||++++|+.|+||||+||.++|||+|||+||+||+.|++.|+++|++|||+||+|||+||++|+|++++|.+|+.||.+
T Consensus 1 lcf~~~~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~ 80 (133)
T PF06148_consen 1 LCFDKEEFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQ 80 (133)
T ss_dssp -------------------------------------------------------------------------HHHHHHH
T ss_pred CCccccccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004390 107 LREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLI 159 (757)
Q Consensus 107 l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll 159 (757)
++++|.++++.+.+..+++++.|++|+.++..|+.+++++.+.++|+++|+||
T Consensus 81 ~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k~~l~~~l~~~~~~~kle~ll 133 (133)
T PF06148_consen 81 FREEVESVRDELDNTQEEIEDKLEERKELREEKALLKLLLDISESLEKLEDLL 133 (133)
T ss_dssp HHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHHHT-SSSSHHH----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccC
Confidence 99999999999999999999999999999999999999999999999999986
No 4
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.52 E-value=5.8e-10 Score=134.18 Aligned_cols=304 Identities=19% Similarity=0.281 Sum_probs=193.4
Q ss_pred CCCCCCCCChHHHHH-hcc-CCCC---------hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhh
Q 004390 32 NLFLSPNFDSESYIS-ELR-TFVP---------FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRM 100 (757)
Q Consensus 32 ~~F~~~dFdvd~FL~-~~r-r~~s---------Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l 100 (757)
+.|..++|||-+|+. .++ ++-. +.+|-.-|+.|.+.++.+|=+-+.+= ..++--....|..|
T Consensus 3 s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~-------l~~~Pr~~~ev~~l 75 (766)
T PF10191_consen 3 SAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQA-------LQRVPRVLREVDRL 75 (766)
T ss_pred hhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhccHHHHHHHHH
Confidence 579999999999997 444 3332 66777788888888888877766542 22333344445555
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcc
Q 004390 101 RAPLLELREKIDGFRGALEGSLVALQNGLK-------QRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFD 173 (757)
Q Consensus 101 ~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~-------~r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~ 173 (757)
+.....++.++..++++++.+..+-...+. -|.++..++..|+---.-......+|.++..
T Consensus 76 ~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~------------ 143 (766)
T PF10191_consen 76 RQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFES------------ 143 (766)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc------------
Confidence 555555555555555555443332222222 2444444444444322233333333433321
Q ss_pred chhhhhhccCCCCCCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHHHHh
Q 004390 174 VNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHG 253 (757)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~ 253 (757)
| -+..+|.-...++-.+.--++.|=....+..++..++.|...+.-.+.++
T Consensus 144 --------------------~---------d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~a 194 (766)
T PF10191_consen 144 --------------------G---------DIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQA 194 (766)
T ss_pred --------------------C---------CHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 0 13334444444444443346788667778999999999999999999999
Q ss_pred hhhcChHHHHHHHHHHHHhcchhhHHHHHHHHhhHHHHhhh---cCCCCcccccCCCcchHHHHHHHHHHHHHhhhhHHH
Q 004390 254 LEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKI---IPHGPSEALAGASGDELESDYEQIKQCVEKDCKFLL 330 (757)
Q Consensus 254 ~~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~vV~P~l~~i---i~~~~l~~~~~~~~~~L~~~y~~il~fv~~~~~~ll 330 (757)
++.++.+...++..+|..||+...++..+.+.-..|..+.- .... ...+-..-|.+.|+.++..+..+++-..
T Consensus 195 l~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W~~~~~~~----~~~~~~~~L~~fyd~ll~~l~~E~~w~~ 270 (766)
T PF10191_consen 195 LNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLWQEYCQSD----QSQSFAEWLPSFYDELLSLLHQELKWCS 270 (766)
T ss_pred HHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhhc----cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887776552 2111 0023345688899999999988887765
Q ss_pred HhhhhccCCCccccccccccHHHHHHHHHh----cCCccccCCCc----hHHHHHHHHHHHHHHHHHhhCCC
Q 004390 331 DISSAENSGLHVFDFLANSILKEVLSAIQK----GKPGAFSPGRP----TQFLRNYKSSLDFLAYLEGYCPS 394 (757)
Q Consensus 331 ~it~~~~s~~~~~dfl~nsvw~ev~~~l~~----~l~~iFapG~P----d~F~~nY~~t~~Fl~~lE~~c~S 394 (757)
.+= +. .+. ++-.++.++...|.- ++..+.....| .....-|.+|..|...++....+
T Consensus 271 ~vF---~~---~~~-~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~ 335 (766)
T PF10191_consen 271 QVF---PD---ESP-VLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSS 335 (766)
T ss_pred HHc---CC---chh-HHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 442 11 122 444555555554443 33333333433 56778899999999999996544
No 5
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.63 E-value=1.9e-05 Score=85.24 Aligned_cols=216 Identities=14% Similarity=0.218 Sum_probs=155.5
Q ss_pred CCCCCCCCChHHHHH-hccCC-CC---hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHH
Q 004390 32 NLFLSPNFDSESYIS-ELRTF-VP---FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLE 106 (757)
Q Consensus 32 ~~F~~~dFdvd~FL~-~~rr~-~s---Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~ 106 (757)
+.|-.++|||..|.- .+... .+ ++.++..|..|+..+...|+..|.++|.+|+.=-+++..+.+.+..--.-+..
T Consensus 6 ~~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~ 85 (291)
T PF10475_consen 6 AIYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKN 85 (291)
T ss_pred HhhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666999999863 44444 44 45558899999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCCC
Q 004390 107 LREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSAT 186 (757)
Q Consensus 107 l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~ 186 (757)
+|+.+..++..+....-++-..-.+|+.+..-...|+.+..+.+.-.+++.++.. .+-
T Consensus 86 ~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~----------------~dy------ 143 (291)
T PF10475_consen 86 LRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEE----------------GDY------ 143 (291)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CCH------
Confidence 8888888888876644444445555666777777777777777777888888842 000
Q ss_pred CCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHHHHhhhhcChHHHHHHH
Q 004390 187 TFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCL 266 (757)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~L 266 (757)
..-|+ +..+..++ ...-.+...++.+..++......+...|++.|......=+.+.=..++
T Consensus 144 ---------------~~Al~-li~~~~~~---l~~l~~~~c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~ 204 (291)
T PF10475_consen 144 ---------------PGALD-LIEECQQL---LEELKGYSCVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQ 204 (291)
T ss_pred ---------------HHHHH-HHHHHHHH---HHhcccchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 00011 22222222 122245566778888888888888888888888877777777888999
Q ss_pred HHHHHhcchhhHHHHHHHHhhH
Q 004390 267 RAYAAIDNTRNAEEIFCNTVVA 288 (757)
Q Consensus 267 r~Y~~l~~~~~ae~~~r~~vV~ 288 (757)
.+|.+||++..+-+-+....+.
T Consensus 205 ~AY~lLgk~~~~~dkl~~~f~~ 226 (291)
T PF10475_consen 205 EAYQLLGKTQSAMDKLQMHFTS 226 (291)
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999988776655555443
No 6
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.48 E-value=0.00011 Score=87.10 Aligned_cols=321 Identities=14% Similarity=0.189 Sum_probs=180.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHH-HH-HHHHHHHhHHHHHHHHH
Q 004390 52 VPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREK-ID-GFRGALEGSLVALQNGL 129 (757)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~-V~-~~r~~v~~~~~~l~~~L 129 (757)
-+|+....+|......++.+.-+.||++|.||...-......-..+..+...+..+.+. +. .++..+.....+++..
T Consensus 10 edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L- 88 (593)
T PF06248_consen 10 EDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQEL- 88 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH-
Confidence 35677788999999999999999999999999986666666655555555555333222 22 2344444444443322
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCCccCCccccchhhhHHH
Q 004390 130 KQRSEAASAREVLE---LLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLE 206 (757)
Q Consensus 130 ~~r~~l~~~k~~L~---lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Le 206 (757)
+++++....+++ -+..+++.+..++..+.. . .+.
T Consensus 89 --~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~----------------------------------------~-~~~ 125 (593)
T PF06248_consen 89 --KRELEENEQLLEVLEQLQEIDELLEEVEEALKE----------------------------------------G-NYL 125 (593)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------------------------------C-CHH
Confidence 334444444333 333334444333333311 0 022
Q ss_pred HHHHHHHHHHHHHHh-----hcCCcchHhHHHHHHHHHHHHHHHHhHHHHHhhh-----h-----------------cCh
Q 004390 207 RIASEMNRLKFYIAH-----AQNLPFIENMEKRIKSASLLLDASLGHCFVHGLE-----H-----------------QNA 259 (757)
Q Consensus 207 R~a~e~~~L~~~~~~-----~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~-----~-----------------~~~ 259 (757)
.+|.-...++..+.. +.+...+..+..+....+..|...|++.+...+. . .+.
T Consensus 126 ~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~ 205 (593)
T PF06248_consen 126 DAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSE 205 (593)
T ss_pred HHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCc
Confidence 233333334333332 2346788888999999999999999999987642 0 112
Q ss_pred --HHHHHHHHHHHHhcchhhHHHHHHHHhhHHHHhhhcCCCCccc----cc---------------CCCcchHHHHHHHH
Q 004390 260 --NVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEA----LA---------------GASGDELESDYEQI 318 (757)
Q Consensus 260 --~~l~~~Lr~Y~~l~~~~~ae~~~r~~vV~P~l~~ii~~~~l~~----~~---------------~~~~~~L~~~y~~i 318 (757)
..|..+|.+...+|......+-|.+.++.-.+.-+|....... .. ......-..+|++|
T Consensus 206 ~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l 285 (593)
T PF06248_consen 206 SQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNL 285 (593)
T ss_pred ccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHH
Confidence 2388999999999999888888887776544444432211100 00 01112346788887
Q ss_pred HHHHHhhhhHHHHhhhhccCCCccccccccccHHHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhCCCHHHH
Q 004390 319 KQCVEKDCKFLLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAV 398 (757)
Q Consensus 319 l~fv~~~~~~ll~it~~~~s~~~~~dfl~nsvw~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~S~~~v 398 (757)
+.++..-...++..... ...-+..++..+||++.+.|.+..-.-=-|-+.+.+.. |....+-+..||..... +
T Consensus 286 ~~vf~fL~~~L~~~~~~---~~~l~~~~g~~i~~~ls~~lI~~~L~~aiP~~~~~l~~-f~~v~~~~~~Fe~~L~~---l 358 (593)
T PF06248_consen 286 LLVFEFLHQHLLSLPSS---DSSLSESFGDHIWPRLSELLISNCLSPAIPTSASELQE-FEEVLESVEEFEEALKE---L 358 (593)
T ss_pred HHHHHHHHHHhcccCCc---hhHHHHHHHHHHHHHHHHHHHHhhCcCcCCCCHHHHHH-HHHHHHHHHHHHHHHHH---c
Confidence 77665545555422110 00235778999999999998776522223444443333 66555444444442110 0
Q ss_pred HHHhhchhHHHHHhhh--ccchhHHHHHHH
Q 004390 399 AKFRAEAIYVEFMKQW--NVGVYFSLRFQE 426 (757)
Q Consensus 399 ~~lR~~~~y~~f~~rW--nLpVYFqlRfqE 426 (757)
. |-. +.. .-..+| |.+.||.=|.+.
T Consensus 359 g-f~~-~~~-~~L~~~~~~i~~~f~~kr~~ 385 (593)
T PF06248_consen 359 G-FLS-SDN-TELSEFVDNIETHFANKRCQ 385 (593)
T ss_pred C-CcC-CCc-hHHHHHHHhHHHHHHHHHHH
Confidence 0 000 000 223566 888888876554
No 7
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=98.27 E-value=2.3e-05 Score=74.59 Aligned_cols=119 Identities=14% Similarity=0.284 Sum_probs=97.8
Q ss_pred CCCCCCCCChHHHHHhccC--------CCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchh
Q 004390 32 NLFLSPNFDSESYISELRT--------FVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAP 103 (757)
Q Consensus 32 ~~F~~~dFdvd~FL~~~rr--------~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~p 103 (757)
+.|+.|||||.+|.+++=. ..++.+-.+-|..=.+.|+.+|=++|.++|.+.++--+++...+..+..|+..
T Consensus 1 e~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~ 80 (132)
T PF10392_consen 1 EAFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSS 80 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 5799999999999987755 66666666777777777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 104 LLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFH 150 (757)
Q Consensus 104 L~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~ 150 (757)
+..+...+.-++.+|-+-.+.++....+=+.+.....+|.-...+..
T Consensus 81 v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~ 127 (132)
T PF10392_consen 81 VESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888666555555566556555443333
No 8
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.05 E-value=1.7e-05 Score=69.61 Aligned_cols=81 Identities=26% Similarity=0.500 Sum_probs=67.2
Q ss_pred CCCCCCChHHHHHhccCCCChH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHH
Q 004390 34 FLSPNFDSESYISELRTFVPFE---TLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREK 110 (757)
Q Consensus 34 F~~~dFdvd~FL~~~rr~~sLe---~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~ 110 (757)
|.+|+|||+.|+.+.-+..+++ .++..|+.-....+.+|=.+|.++|.+||.-+..++.+...+..++.-|..+...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999776766744 5566788888889999999999999999999999998888888777777777666
Q ss_pred HHHH
Q 004390 111 IDGF 114 (757)
Q Consensus 111 V~~~ 114 (757)
+..+
T Consensus 81 ~~~l 84 (87)
T PF08700_consen 81 IQSL 84 (87)
T ss_pred HHHh
Confidence 5543
No 9
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.21 Score=58.51 Aligned_cols=537 Identities=17% Similarity=0.180 Sum_probs=268.4
Q ss_pred CCCCCCCCChHHHHHhcc----CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHH
Q 004390 32 NLFLSPNFDSESYISELR----TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLEL 107 (757)
Q Consensus 32 ~~F~~~dFdvd~FL~~~r----r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l 107 (757)
+.|-.|+|+--+|+..+= ....+|.|++-++.-...+.++|...|-.. +.....+.+.+.+.+..+.++
T Consensus 12 q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q-------~N~g~~~~e~l~da~~ai~eL 84 (793)
T KOG2180|consen 12 QMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQ-------ENSGTRGKENLADAQAAIEEL 84 (793)
T ss_pred HhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc-------ccccchhhhhHHHHHHHHHHH
Confidence 456669999999999773 556677777755555555666666655432 334445667777777777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhh
Q 004390 108 REKIDGFRGALEGSLVALQNGLKQ-------RSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERK 180 (757)
Q Consensus 108 ~~~V~~~r~~v~~~~~~l~~~L~~-------r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~ 180 (757)
-.++.++++.-+.....+++.-+. |+.+...=.+|..|-.....|++++.|+.. .+
T Consensus 85 ~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~k-r~---------------- 147 (793)
T KOG2180|consen 85 FQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSK-RS---------------- 147 (793)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cc----------------
Confidence 777777777666655555544433 334444444677766667777777777742 00
Q ss_pred ccCCCCCCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHHHHhhhhcCh-
Q 004390 181 SMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNA- 259 (757)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~~~~~- 259 (757)
.++. ...|.- +++|--+...-++.|=|.++..+|++++..+.+.+-.-|.++..+++.
T Consensus 148 ----------------y~e~-a~~lqa----i~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~ 206 (793)
T KOG2180|consen 148 ----------------YGEA-ASPLQA----ILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETH 206 (793)
T ss_pred ----------------HHHH-HhHHHH----HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 0001 111222 222222333447899999999999999999998887777776553322
Q ss_pred --HHHHHHHH-HHHHhcchhhHHHHHHHHhhHHHHhhhcCCCC--c-ccccCCCcchHHHHHHHHHHHHHh---hhhHHH
Q 004390 260 --NVIYNCLR-AYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGP--S-EALAGASGDELESDYEQIKQCVEK---DCKFLL 330 (757)
Q Consensus 260 --~~l~~~Lr-~Y~~l~~~~~ae~~~r~~vV~P~l~~ii~~~~--l-~~~~~~~~~~L~~~y~~il~fv~~---~~~~ll 330 (757)
..+++.|+ ++..+|. .+--+|+.+|+-|+++-+.+=. . +.....+.+.+..-|.-+...+.. ..+++.
T Consensus 207 ~~~~~l~~l~daC~v~d~---lepsvreelIkwf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iF 283 (793)
T KOG2180|consen 207 EEALLLQKLSDACLVVDA---LEPSVREELIKWFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIF 283 (793)
T ss_pred CCccHHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccC
Confidence 11121111 1111211 1223567888888866542200 0 011134556666667766654422 111111
Q ss_pred HhhhhccCCCccccccccccH----HHHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhCC--------CHHHH
Q 004390 331 DISSAENSGLHVFDFLANSIL----KEVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCP--------SRSAV 398 (757)
Q Consensus 331 ~it~~~~s~~~~~dfl~nsvw----~ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~--------S~~~v 398 (757)
...= .+++=..... ...+..|++++ +.=-+-+.|.---..|.+|=..|+...+ ...+.
T Consensus 284 P~dW-------~v~~RLt~eFc~~Tr~~L~~Il~~~---~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~ 353 (793)
T KOG2180|consen 284 PADW-------HVAYRLTIEFCHQTRKQLESILKRR---KKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQ 353 (793)
T ss_pred Cccc-------chhHHHHHHHHHHHHHHHHHHHHHh---hhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccc
Confidence 0000 0011011111 22233344443 2223446788888888888888887542 11111
Q ss_pred H-HHhhchhHHHHHhhh--ccchhHHHHHHHHHHhHHHhhhhcccccccCCCCCCCCCcccchhhHHHHHHHHhhhcccC
Q 004390 399 A-KFRAEAIYVEFMKQW--NVGVYFSLRFQEIAGALDSALTAASLAPVQNSNSNQGNSQALTLKQSVTLLDSMKSCWRQD 475 (757)
Q Consensus 399 ~-~lR~~~~y~~f~~rW--nLpVYFqlRfqEIa~~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s~~l~~~l~~cWs~~ 475 (757)
. .=-..+-+....+-| -|-+|+..-=|++..-||.-.++......+. . ..+...-.++.+.-++.+.++|-..-
T Consensus 354 ~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~-~--~~~~~s~vlpSsadlF~~Ykkcltq~ 430 (793)
T KOG2180|consen 354 FEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPK-S--NTDEESLVLPSSADLFVAYKKCLTQC 430 (793)
T ss_pred cccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCC-C--CcccccccCccHHHHHHHHHHHHHHH
Confidence 0 000011123333333 5889999988999999998887543321111 1 12223566788888888888887722
Q ss_pred ccccccchHHHHHHH---HHHHHHHHHHhhhhccccCCCCCCCCCCcc----------cccCChhhHHHHHHhHHHHHHH
Q 004390 476 VFLLPCSDKFLRLSL---QLLSRYSNWLSSGLAARSSGHASFNPGNEW----------AISAAPDDFIYIIHDINCLATE 542 (757)
Q Consensus 476 Vfl~~L~~rFwkLtL---QllsRy~~w~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~Di~~L~~~ 542 (757)
.=|..=.+--..+.. .-+.+|+.-|-.+. -+.+++...+... .+..+++++.-+. .+-.-..+
T Consensus 431 ~~Ls~n~dpl~~~~~~f~k~LreYa~kil~~~---lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~-~~lst~e~ 506 (793)
T KOG2180|consen 431 SELSENNDPLIALLAVFSKWLREYAQKILLGN---LPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDIC-CILSTAEY 506 (793)
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHhhcc---CCcccccccCchhhhHHHhhhhhhhcccHHHHHHHH-HHHHHHHH
Confidence 222111122233333 33445544333222 1111222111100 0001111111111 11111111
Q ss_pred hhhhHHHHHHHhhccCChhhHHHHH-HHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCCCCCCC
Q 004390 543 VSGDYLTHVLQLLSSCSSEVLDLVK-QSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRH 621 (757)
Q Consensus 543 i~~~~~~~i~~~l~~~~~~~~~~~~-~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~ 621 (757)
+... ......+|...-. ...+. -++.+.........-.....+|+.+...|...|..+.-+ ||+|=.--+.-
T Consensus 507 ~~~t-t~qle~kl~e~~~--~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a~~~~lt~msk~----~~~~l~~vgDQ 579 (793)
T KOG2180|consen 507 CLAT-TIQLEKKLKEIVD--ASYIKGVSFSEEREVFSSKISVSLQFLVQDLENALDPDLTPMSKM----QWQNLEGVGDQ 579 (793)
T ss_pred HHHH-HHHHHHHHHHHHH--HHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHhhCcccChHHHH----HHHHhcCcccc
Confidence 1110 0000111110000 00000 001111111222223344568889999999988876543 38877767799
Q ss_pred CcchHhhhHhHHHHHhccc
Q 004390 622 SPYVSGVLRPLKTLLEGER 640 (757)
Q Consensus 622 S~YV~~il~Pl~~F~~~~~ 640 (757)
|+||+++..-+.+|....+
T Consensus 580 ss~v~s~~~h~~q~~~~i~ 598 (793)
T KOG2180|consen 580 SSYVSSLNFHLSQFVPLIR 598 (793)
T ss_pred chhhHHHHHHHHhhhHHHH
Confidence 9999999888888875443
No 10
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.59 E-value=0.018 Score=64.67 Aligned_cols=173 Identities=21% Similarity=0.315 Sum_probs=116.4
Q ss_pred CCCChHHHHHhcc----CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHH
Q 004390 37 PNFDSESYISELR----TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKID 112 (757)
Q Consensus 37 ~dFdvd~FL~~~r----r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~ 112 (757)
|||||.+||..+= .-..|+++...|+.|...|.+++.+.|..- + +.| ..+.+.+...+..+.++-.+|.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q-~---~~~---~~~~~~l~~a~~~i~~L~~~i~ 74 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQ-S---SSG---QDAEEDLEEAQEAIQELFEKIS 74 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-h---hcc---ccccccHHHHHHHHHHHHHHHH
Confidence 7999999998762 446788999999999999999999988762 2 222 3345566666666666667776
Q ss_pred HHHHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCC
Q 004390 113 GFRGALEGSLVALQNGLKQ-------RSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSA 185 (757)
Q Consensus 113 ~~r~~v~~~~~~l~~~L~~-------r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~ 185 (757)
+++..-++....|++..+. |+.|...=..|+.|......+.+|+.++.. ..
T Consensus 75 ~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~-r~--------------------- 132 (383)
T PF04100_consen 75 EIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKK-RQ--------------------- 132 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC---------------------
Confidence 6666666655555544433 444444445788888888888899888843 10
Q ss_pred CCCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHHHHhh
Q 004390 186 TTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGL 254 (757)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~ 254 (757)
.++. ...|. -+++|--+...-++.|-|..+..++..++..|...+-.-|....
T Consensus 133 -----------Y~e~-a~~L~----av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f 185 (383)
T PF04100_consen 133 -----------YKEI-ASLLQ----AVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELF 185 (383)
T ss_pred -----------HHHH-HHHHH----HHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1001 11222 12222223333378999999999999999998888877777665
No 11
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=97.35 E-value=0.0088 Score=62.48 Aligned_cols=126 Identities=16% Similarity=0.186 Sum_probs=89.1
Q ss_pred HHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc----ccccCC
Q 004390 570 ILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE----RAMTYL 645 (757)
Q Consensus 570 l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~----~~~~~l 645 (757)
+.+.....-+..|.+...|...++.++...-.-+..|+.. +|.-|+++++||+||..+++-+..|...- +.. .+
T Consensus 40 l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~~~~i~~~Ia~v-KWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~-~i 117 (234)
T PF10474_consen 40 LEQFYSQTVSAVPDLREPIYKCVASRLLDLEQILNSIANV-KWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQG-PI 117 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHc-CCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 4444444445677788888888887776544445566665 89999999999999999999999997644 222 67
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q 004390 646 TPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRS 725 (757)
Q Consensus 646 ~~~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~ 725 (757)
+++....++..++..+++... |-..|.||-. +++ |.+|.||++.|...
T Consensus 118 ~~~~~~~lw~~~i~~~~~~Lv--------------eg~s~vkKCs----------------~eG--RalM~lD~q~~~~~ 165 (234)
T PF10474_consen 118 PPEVQNVLWDRLIFFAFETLV--------------EGYSRVKKCS----------------NEG--RALMQLDFQQLQNK 165 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHH--------------HHHHhccCCC----------------hhh--HHHHHHHHHHHHHH
Confidence 888777777766665554442 2345544332 222 77888899999999
Q ss_pred HHhc
Q 004390 726 LAAL 729 (757)
Q Consensus 726 ~~~l 729 (757)
++++
T Consensus 166 le~l 169 (234)
T PF10474_consen 166 LEKL 169 (234)
T ss_pred HHHH
Confidence 9988
No 12
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.23 Score=57.64 Aligned_cols=217 Identities=13% Similarity=0.122 Sum_probs=134.9
Q ss_pred cCCCCCCCCChHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHH
Q 004390 31 SNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREK 110 (757)
Q Consensus 31 ~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~ 110 (757)
-+.|.+..|+++.|-+.--.+..+.+-.+||..-+..++.+|=.=|=+--.+-+--.+.+--.|..++.++..+..++.+
T Consensus 50 ls~fln~~fSv~~~tSas~~s~~ia~q~~~L~q~lr~ldrqLh~qv~~Rh~allaQat~~~~~d~~l~sl~~~v~~lqs~ 129 (797)
T KOG2211|consen 50 LSSFLNTLFSVQMMTSASKESNRIATQCDDLTQKLRELDRQLHAQVLKRHMALLAQATEELFEDLELRSLLVKVAELQSE 129 (797)
T ss_pred ccccccchhhhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 46799999999998874345555555555555555556666655555566677777777777888888888888888888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCC
Q 004390 111 IDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQP 190 (757)
Q Consensus 111 V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 190 (757)
|..++..+.+..+.+..+-.+-..+..+..+|.. .-+..+|-+-|..+.+.+
T Consensus 130 i~riknd~~epyk~i~~kt~vl~rLhva~~lLrr----sgr~l~LskkL~~l~~~~------------------------ 181 (797)
T KOG2211|consen 130 IKRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRR----SGRALELSKKLASLNSSM------------------------ 181 (797)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccC------------------------
Confidence 8888888887777666555444455555555543 222223333333322211
Q ss_pred ccCCccccchhhhHHHHHHHHHHHHHHHHHh--hcCCcchHhHHHHHHHHHHHHHHHHhHHHHHhhhhcChHHHHHHHHH
Q 004390 191 VENGTNVRETQSMLLERIASEMNRLKFYIAH--AQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRA 268 (757)
Q Consensus 191 ~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~--~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~Lr~ 268 (757)
..-+.|+|+-.|.|-++..- -.+..++++--.-+..+...+...--..+..+++++|...+..-|.+
T Consensus 182 -----------~~d~traaq~lneLd~l~e~~dlsgIdvId~el~fv~~s~~evrN~a~~vLe~glq~~ne~qvgtglqv 250 (797)
T KOG2211|consen 182 -----------VVDATRAAQTLNELDSLLEVLDLSGIDVIDKELMFVSNSSPEVRNKALPVLEAGLQSHNEQQVGTGLQV 250 (797)
T ss_pred -----------CHhHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhcHHHHhhHHHH
Confidence 11266777766776655532 23444444433333344444554444566778888899999999999
Q ss_pred HHHhcchhhHHHHHHHHh
Q 004390 269 YAAIDNTRNAEEIFCNTV 286 (757)
Q Consensus 269 Y~~l~~~~~ae~~~r~~v 286 (757)
|..+|....-...++...
T Consensus 251 fynfgtLekt~d~lv~~y 268 (797)
T KOG2211|consen 251 FYNFGTLEKTADLLVSRY 268 (797)
T ss_pred HHhcchHHHHHHHHHHhc
Confidence 999986655444444444
No 13
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=97.04 E-value=1.4 Score=53.76 Aligned_cols=485 Identities=15% Similarity=0.179 Sum_probs=245.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHhHHHHHhhhhcChHHHHHHHHHHHHhcchhhHHHHHHHH
Q 004390 206 ERIASEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNT 285 (757)
Q Consensus 206 eR~a~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~ 285 (757)
.+.|.-..+|..+.......|-..+...+|......+-.+|=..|..+.+.+|...+.+|-++...++....+.+.|-..
T Consensus 75 ~~~A~il~~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg~~~i~~fi~k 154 (710)
T PF07393_consen 75 EEAAKILRNLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGGSSCIDFFINK 154 (710)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcHHHHHHHHh
Confidence 33455555666555444467777888999999888888888888888888899999999999999999988877777652
Q ss_pred h---h-HHHHhhh--cC----CCCc---ccccCCCcchHHHHHHHHHHHHHhhhhHHHHhhhhccCCCcccc-----ccc
Q 004390 286 V---V-APLMQKI--IP----HGPS---EALAGASGDELESDYEQIKQCVEKDCKFLLDISSAENSGLHVFD-----FLA 347 (757)
Q Consensus 286 v---V-~P~l~~i--i~----~~~l---~~~~~~~~~~L~~~y~~il~fv~~~~~~ll~it~~~~s~~~~~d-----fl~ 347 (757)
- . ...+... +. +..+ +.........|..+|+.|...+..+..-+-.+= ++..+..- ++.
T Consensus 155 ~~~f~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VF---p~~~~Vm~~fiervf~ 231 (710)
T PF07393_consen 155 HEFFIDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVF---PNPEPVMQKFIERVFE 231 (710)
T ss_pred ChhhhhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHH
Confidence 1 1 1111000 00 0000 000112335789999999999988877665542 21111111 222
Q ss_pred cccHHHHHHHHHhcCCccccCCCch----HHHHHHHHHHHHHHHHHhhCCC---------HHHHHHHhh-----c---hh
Q 004390 348 NSILKEVLSAIQKGKPGAFSPGRPT----QFLRNYKSSLDFLAYLEGYCPS---------RSAVAKFRA-----E---AI 406 (757)
Q Consensus 348 nsvw~ev~~~l~~~l~~iFapG~Pd----~F~~nY~~t~~Fl~~lE~~c~S---------~~~v~~lR~-----~---~~ 406 (757)
+.|-+-|...|..... ..+. .+|.-|..|.+|++.|.....+ ...+..+-. | ..
T Consensus 232 ~~I~~~i~~lL~~a~~-----~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~~l~~~~ 306 (710)
T PF07393_consen 232 QVIQEYIESLLEEASS-----ISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEPYLEDDE 306 (710)
T ss_pred HHHHHHHHHHHHhhcc-----CCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHcCcch
Confidence 2222222222222221 1344 4556688999999999887222 111222111 1 23
Q ss_pred HHHHHhhh-------ccchhHHHHHH-------------HHHHhHHHhhhh-----------------cccccccC----
Q 004390 407 YVEFMKQW-------NVGVYFSLRFQ-------------EIAGALDSALTA-----------------ASLAPVQN---- 445 (757)
Q Consensus 407 y~~f~~rW-------nLpVYFqlRfq-------------EIa~~lE~~L~~-----------------~~~~~~~~---- 445 (757)
|...+.+| .+.-|.++.=+ .+...+..++.. ..+.+...
T Consensus 307 Yl~~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (710)
T PF07393_consen 307 YLEEEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKLDRSQQQASL 386 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhcccCcccccccc
Confidence 33333332 11111111111 111111111110 00000000
Q ss_pred -------------CCCCCCCCcccchhhH----HHHHHHHhhhc--ccCccccccchHHHHHHHHHH-HHHHHHHhhhhc
Q 004390 446 -------------SNSNQGNSQALTLKQS----VTLLDSMKSCW--RQDVFLLPCSDKFLRLSLQLL-SRYSNWLSSGLA 505 (757)
Q Consensus 446 -------------~~~~~~~~~~f~l~~s----~~l~~~l~~cW--s~~Vfl~~L~~rFwkLtLQll-sRy~~w~~~~~~ 505 (757)
.....+....+.+... ...-+++.||- ++.--++.-+-..+.+.++-+ .+|. ..++.
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i---~~~le 463 (710)
T PF07393_consen 387 ENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHI---EPALE 463 (710)
T ss_pred cchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 0000011123333332 33445666663 344444555555556655544 5553 34443
Q ss_pred cccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHhhhhHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhchhhHHH
Q 004390 506 ARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVI 585 (757)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~l~~~~~~l~ 585 (757)
+...+.+..+... ......+. +..++.-++.+...+...|.+.|.|.+.. .++....+.+........++..+....
T Consensus 464 a~~~~~~~~~~~~-~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~~~-~~~~~~~~~~~k~~~~~~le~~v~~gL 540 (710)
T PF07393_consen 464 AAYYKLSSQDIAE-SKEVPPLV-FLELINQADTILQLLQIFYKEELLPLIQS-SPDFLNECIQKKKSFESRLEEKVNAGL 540 (710)
T ss_pred HHHhhhhcccccc-cCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000111000 00001233 67777788888888888787888877642 233322233333344444555555555
Q ss_pred HHHHHHHHHHHHHHhhhhcchhhhhhccCCC-----CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHH
Q 004390 586 NTIVDALVEKAVEDLRQLKGITATYRMTNKP-----LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQ 660 (757)
Q Consensus 586 ~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~-----~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~ 660 (757)
+..++.+...+...|. ..=+.=|+..+-. .||.+|.-|...|..+..-..+ .+... -+..++.+
T Consensus 541 ~~~i~~l~~~v~~iL~--~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~-----~l~~~----nl~~f~~e 609 (710)
T PF07393_consen 541 NKGIDVLMNWVEFILS--EQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKG-----SLDGS----NLDVFLQE 609 (710)
T ss_pred HHHHHHHHHHHHHHHh--hcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHH-----Hccch----hHHHHHHH
Confidence 5566666665444444 4556667763322 3666655555444444333322 34433 34455677
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHH
Q 004390 661 ITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQAADIPPYR 740 (757)
Q Consensus 661 v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv~~~~~~~~~ 740 (757)
+..+++.. ++ +-++|++=.. .| -+||.-|+.+|..-+..+|++. =.+.|.
T Consensus 610 lg~~l~~~---l~-------~h~kk~~vs~---~G----------------g~~l~~Dl~~Y~~~~~~~~~~~-v~~~F~ 659 (710)
T PF07393_consen 610 LGERLHRL---LL-------KHLKKFTVSS---TG----------------GLQLIKDLNEYQDFIRSWGIPS-VDEKFE 659 (710)
T ss_pred HHHHHHHH---HH-------HHHHhCccCc---hh----------------HHHHHHHHHHHHHHHHHcCCch-HHHHHH
Confidence 77888874 11 2233322111 11 1689999999999999998753 346677
Q ss_pred HHHHh
Q 004390 741 SLWQC 745 (757)
Q Consensus 741 ~L~~~ 745 (757)
.|.++
T Consensus 660 ~L~~l 664 (710)
T PF07393_consen 660 ALKEL 664 (710)
T ss_pred HHHHH
Confidence 77663
No 14
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0093 Score=66.47 Aligned_cols=98 Identities=17% Similarity=0.336 Sum_probs=77.7
Q ss_pred CCCCCCCCccCcCCCCCCCCChHHHHHhccCCCChHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHH
Q 004390 20 DPADSHPLWFKSNLFLSPNFDSESYISELRTFVPFETLRSEL---QAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAA 96 (757)
Q Consensus 20 ~p~~~~~l~F~~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dL---r~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~ 96 (757)
.|.+ |-+.+..+-..++|||+.|+.+++|--||+.|-++= -.--+.|.+-|--||=+||..|++--..++-|..-
T Consensus 16 ~pag--pdplsptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~ 93 (636)
T KOG2346|consen 16 LPAG--PDPLSPTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSN 93 (636)
T ss_pred CCCC--CCCCCccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhh
Confidence 4555 445567788999999999999999999999997643 34455678899999999999999988888888888
Q ss_pred HHhhchhHHHHHHHHHHHHHHHH
Q 004390 97 VVRMRAPLLELREKIDGFRGALE 119 (757)
Q Consensus 97 i~~l~~pL~~l~~~V~~~r~~v~ 119 (757)
+.+|-.++.++-+.+..+.+...
T Consensus 94 f~~me~eMd~L~~~ms~i~~~s~ 116 (636)
T KOG2346|consen 94 FFGMEQEMDGLEEVMSSIQSKSD 116 (636)
T ss_pred hhhhcchhhhHHHHHHHHhhhhc
Confidence 88888888777766654444433
No 15
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.44 E-value=0.062 Score=51.82 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=69.8
Q ss_pred CCCCCCChHHHHHhcc--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHH
Q 004390 34 FLSPNFDSESYISELR--TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKI 111 (757)
Q Consensus 34 F~~~dFdvd~FL~~~r--r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V 111 (757)
...++|+|-+..-++- ..+.++.-..+++...+.+...|=++||++|++|-+==.+-..+-..|..-+.-+.++|+.+
T Consensus 16 ~~~~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L 95 (142)
T PF04048_consen 16 MLTDDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESL 95 (142)
T ss_pred HhcCCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999998887665 44458899999999999999999999999999997655555555556665566666666666
Q ss_pred HHHHHHHHhHHHHHHH
Q 004390 112 DGFRGALEGSLVALQN 127 (757)
Q Consensus 112 ~~~r~~v~~~~~~l~~ 127 (757)
.+.+..+.....++++
T Consensus 96 ~~ak~~L~~~~~eL~~ 111 (142)
T PF04048_consen 96 QEAKSLLGCRREELKE 111 (142)
T ss_pred HHHHHHHhcCCHHHHH
Confidence 6666666655555543
No 16
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=1.4 Score=49.42 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=71.2
Q ss_pred HHHHHHHHHhhhhcchhhhhhcc----CCCCC---CCCCcchHhhhHhHHHHH-------hccccccCC-----CHHHHH
Q 004390 591 ALVEKAVEDLRQLKGITATYRMT----NKPLP---VRHSPYVSGVLRPLKTLL-------EGERAMTYL-----TPEAKN 651 (757)
Q Consensus 591 ~l~~~c~~~L~~v~~Ip~~YR~T----nk~~P---t~~S~YV~~il~Pl~~F~-------~~~~~~~~l-----~~~~~~ 651 (757)
.+......+|..|+.||- |-.| --|.| +-|+.||.++..-+-..- ++.... .. .+=...
T Consensus 673 ~liS~~~a~l~eisqi~i-w~~teeQ~a~PL~nfSsyPqS~lkqagE~~l~~pqQ~eP~Adgistn-gdSnnedaqffat 750 (828)
T KOG4182|consen 673 ELISFSFAPLEEISQIGI-WLLTEEQHAEPLLNFSSYPQSLLKQAGEVCLIKPQQAEPCADGISTN-GDSNNEDAQFFAT 750 (828)
T ss_pred hhhhhhhcchhhHhhhhh-HHhcchhhcccccccccccHHHHHHHHHHHhcchhhccchhhccccc-ccCcchhhhHHHH
Confidence 455555666777777663 4433 23444 235666665544332111 111100 01 122567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Q 004390 652 ELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGV 731 (757)
Q Consensus 652 ~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv 731 (757)
+|+-.|++..|.-|...+. -.| - + .|.--.||-.|++|+.+-+++||+
T Consensus 751 ewmfkVaEga~aLYmdQi~--------------gIk---~-------------i--~dr~AqQLSVDIEYLSNVLeaL~l 798 (828)
T KOG4182|consen 751 EWMFKVAEGACALYMDQIL--------------GIK---S-------------I--PDRAAQQLSVDIEYLSNVLEALGL 798 (828)
T ss_pred HHHHHHHHhHHHHHHHHHh--------------ccc---c-------------c--CchhhhhhhhhHHHHHHHHHHhCC
Confidence 9999999999999987421 111 0 1 122346999999999999999998
Q ss_pred CCCCCccHHHHHHhcccccc
Q 004390 732 QAADIPPYRSLWQCVAPSDR 751 (757)
Q Consensus 732 ~~~~~~~~~~L~~~V~~~~~ 751 (757)
... +.+.....|+++++.
T Consensus 799 pI~--~~Laqf~TcLaa~~~ 816 (828)
T KOG4182|consen 799 PIN--LQLAQFLTCLAAAPD 816 (828)
T ss_pred CCC--hHHHHHHHHHhcCcH
Confidence 764 334444555555543
No 17
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=95.41 E-value=0.34 Score=52.91 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=94.3
Q ss_pred ChhhHHHHHHhHHHHHHHhhhhHHHHHHHhhcc-CChhhHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhh
Q 004390 525 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSS-CSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQL 603 (757)
Q Consensus 525 ~~~~~~~l~~Di~~L~~~i~~~~~~~i~~~l~~-~~~~~~~~~~~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v 603 (757)
...+++-+..++.-|...... +.++|...... .+.+. ..-..+.+.+.+........|...+-.+.-+-|
T Consensus 91 ~l~qi~Qi~iNl~~le~Ac~~-le~~l~~~~~~~~~~~~-----~~~l~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l--- 161 (311)
T PF04091_consen 91 NLSQIVQIVINLEYLEKACKE-LEEFLSSLRGIPQSAGG-----HIRLKATKMFKDARKAAEKRIFELVNSKIDEFL--- 161 (311)
T ss_dssp -HHHHHHHHHHHHHHHTTHHH-HHHHHHHHHT---------------------S---TTHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHhHHHHHHHHHH-HHHHHHHHcCCCccchH-----hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 346778888887777655554 44545444311 11110 001122233333333334445444444444444
Q ss_pred cchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 004390 604 KGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSL 683 (757)
Q Consensus 604 ~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL 683 (757)
+ ..-|-||-.++|+.||.|+..++.=|+.-.+..-. .||.++++.+..++++++++++.+. |.+ +..
T Consensus 162 -e-la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~--~LP~~v~~~~~~~a~~his~~l~~~----Ll~-----~~v 228 (311)
T PF04091_consen 162 -E-LAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLT--NLPPSVKQLVYFSACDHISESLLDL----LLS-----DDV 228 (311)
T ss_dssp -T-T--TT--------S--HHHHHHHHHHHHHHHTTTT--TSH-HHHHHHHHHHHHHHHHHHHHH----HT---------
T ss_pred -h-hcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHH----hcC-----Ccc
Confidence 2 25589999999999999999999999988865433 7899999999999999999999984 522 222
Q ss_pred HHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC---CC-CCCCccHHHHHHhcc
Q 004390 684 LKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALG---VQ-AADIPPYRSLWQCVA 747 (757)
Q Consensus 684 ~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lg---v~-~~~~~~~~~L~~~V~ 747 (757)
+| -.. + + =.|+-+||.++..-+..+. .+ ..-...|.+|.++|.
T Consensus 229 k~---in~---~--------a-------l~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvd 275 (311)
T PF04091_consen 229 KR---INM---N--------A-------LQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVD 275 (311)
T ss_dssp -----------T--------T-------HHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHH
T ss_pred cc---cCH---H--------H-------HHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHH
Confidence 22 221 1 1 2589999999999999882 22 233477888888764
No 18
>PF15469 Sec5: Exocyst complex component Sec5
Probab=94.98 E-value=2.6 Score=42.15 Aligned_cols=165 Identities=12% Similarity=0.188 Sum_probs=100.9
Q ss_pred HHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhch------hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 70 HELIDLINRDYADFVNLSTKLVDVDAAVVRMRA------PLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE 143 (757)
Q Consensus 70 ~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~------pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~ 143 (757)
++|-.||.+||..||+--..|..+-..+..... ++..+...+..+..........+-+.=++-..++....+++
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 578899999999999999999888888866664 57888888887777777666555433333334444444554
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCCccCCccccchhhhHHHHHHHHHHHHHHHHHhhc
Q 004390 144 LLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSMLLERIASEMNRLKFYIAHAQ 223 (757)
Q Consensus 144 lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LeR~a~e~~~L~~~~~~~~ 223 (757)
-.--+++.=.+|++.+.. . --+.+..+|.+.+.+...-.
T Consensus 82 r~~flF~LP~~L~~~i~~----------------------------------------~-dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 82 RNRFLFNLPSNLRECIKK----------------------------------------G-DYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHHHHHHhHHHHHHHHHc----------------------------------------C-cHHHHHHHHHHHHHHHHHhh
Confidence 444444444455554421 0 14456778888887776654
Q ss_pred -CCcchHhHHHHHHHHHHHHHHHHhHHHHHhhhhcChHHHHHHHHHHHHhcchhh
Q 004390 224 -NLPFIENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRN 277 (757)
Q Consensus 224 -~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~Lr~Y~~l~~~~~ 277 (757)
..+.+.++-.-++.+-..+...|-+-|.+.- .+.+....+.+..-.||-..+
T Consensus 121 ~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~--~s~~~~~~~i~~Ll~L~~~~d 173 (182)
T PF15469_consen 121 QQVPVFQKVWSEVEKIIEEFREKLWEKLLSPP--SSQEEFLKLIRKLLELNVEED 173 (182)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCCC
Confidence 6677777765555555555554444443332 233344444444455555443
No 19
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=92.57 E-value=20 Score=39.69 Aligned_cols=91 Identities=22% Similarity=0.317 Sum_probs=63.7
Q ss_pred CChHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004390 52 VPFETLRS---ELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNG 128 (757)
Q Consensus 52 ~sLe~Lr~---dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~ 128 (757)
.+++.|.+ .|.+-.+.+..++-+|-+++|.-||.-+..+.+....+..+..-+..+..++.+..+..........
T Consensus 7 ~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~-- 84 (338)
T PF04124_consen 7 LSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQ-- 84 (338)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 45666665 4666777899999999999999999999998888888887777777777777666555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004390 129 LKQRSEAASAREVLELLLDTF 149 (757)
Q Consensus 129 L~~r~~l~~~k~~L~lll~~~ 149 (757)
++.+.|+....++..+
T Consensus 85 -----~~~~~r~~~~~~l~~~ 100 (338)
T PF04124_consen 85 -----KISEERKKASLLLENH 100 (338)
T ss_pred -----HHHHHHHHHHHHHHHH
Confidence 3444454455544444
No 20
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.51 E-value=33 Score=42.07 Aligned_cols=130 Identities=18% Similarity=0.258 Sum_probs=101.7
Q ss_pred cCCCCCCCC---ChHHHHHhcc----------------CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCC
Q 004390 31 SNLFLSPNF---DSESYISELR----------------TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLV 91 (757)
Q Consensus 31 ~~~F~~~dF---dvd~FL~~~r----------------r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~ 91 (757)
++-|.+|+| ||.+|=+-+. +...-..|+.-|..|+..+.--|+.=|-.--++|..-=+++.
T Consensus 199 Psiffk~dF~Lddp~TF~~V~~~id~t~~~~a~~~~~~~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~ 278 (951)
T KOG2115|consen 199 PSIFFKSDFQLDDPATFHSVLPAIDLTLTKTAMNRQAERLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLH 278 (951)
T ss_pred cchhcCCcccCCCcchHhhhccccccchhcccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 677888887 6777765442 446677899999999999999999999999999999999999
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004390 92 DVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIK 160 (757)
Q Consensus 92 G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~ 160 (757)
++.+.+.+=-.-+..+|+.+..+-...-.....+.+.-..|++...-++.|+++..+++.-.++.-++.
T Consensus 279 ~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~ 347 (951)
T KOG2115|consen 279 NLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLLS 347 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence 988777666566777777777776666666656666556677777777888888878877777777774
No 21
>PF14923 CCDC142: Coiled-coil protein 142
Probab=82.81 E-value=17 Score=41.51 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHH----HhhhhcchhhhhhccCCC-CCCCCCcchHhhhHhHH-HHHhccccccCCCHHHHHHHHHH
Q 004390 583 VVINTIVDALVEKAVE----DLRQLKGITATYRMTNKP-LPVRHSPYVSGVLRPLK-TLLEGERAMTYLTPEAKNELLLD 656 (757)
Q Consensus 583 ~l~~~iv~~l~~~c~~----~L~~v~~Ip~~YR~Tnk~-~Pt~~S~YV~~il~Pl~-~F~~~~~~~~~l~~~~~~~~~~~ 656 (757)
.+...++..+...|.. .+..+-=-.+-.|+-..+ .|+.||.||..+++-+- -.+.+.. .++++.....+..
T Consensus 231 ~~s~e~~~~f~~~C~~~s~~~f~~~mP~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q---~L~~~aq~~~l~~ 307 (450)
T PF14923_consen 231 SLSSECLRLFSQDCRKMSLAIFELCMPSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQ---GLPPEAQIPALSQ 307 (450)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 3445555566666654 444444446667766555 69999999976554432 2233332 4677766666777
Q ss_pred HHHHHHHHHHHH
Q 004390 657 AATQITSRYHEL 668 (757)
Q Consensus 657 v~~~v~~~Y~~~ 668 (757)
+++.+++.....
T Consensus 308 ~l~a~~eAWLdh 319 (450)
T PF14923_consen 308 ALTAMLEAWLDH 319 (450)
T ss_pred HHHHHHHHHHHH
Confidence 777777666654
No 22
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=77.05 E-value=20 Score=39.47 Aligned_cols=51 Identities=12% Similarity=0.209 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhHHHHHhhhhcChHHHHHHHHHHHHhcchhhHHHHHHHHh
Q 004390 236 KSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTV 286 (757)
Q Consensus 236 ~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~v 286 (757)
+.++.+|..-+.+-|.++.+.+|...+.++.++|-.||...++.+++-+-+
T Consensus 2 ~~~~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yi 52 (324)
T smart00762 2 DEARETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYI 52 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHH
Confidence 456778888888999999999999999999999999999999999988755
No 23
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.48 E-value=9.2 Score=44.17 Aligned_cols=101 Identities=17% Similarity=0.310 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 004390 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRS 133 (757)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~ 133 (757)
|..|+..+-+ .+|.---+-||= -+..|+|-.+|+-+..-++++|..+.++|.-|.+....+++.+.+.. .-|+
T Consensus 59 lksl~~aMie---LIN~DYADFVnL-StnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~---~~Re 131 (705)
T KOG2307|consen 59 LKSLQNAMIE---LINDDYADFVNL-STNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELC---SNRE 131 (705)
T ss_pred HHHHHHHHHH---HHhhhHHHHHhh-hhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHH
Confidence 3444544433 456666677764 35689999999999999999999999999988877777775555543 4455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 004390 134 EAASAREVLELLLDTFHVVSKVEKLIKELPSL 165 (757)
Q Consensus 134 ~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~ 165 (757)
..+.-..+. .+...|+||+++|..-++.
T Consensus 132 ~k~~lldl~----~v~~~ieKL~k~L~s~psk 159 (705)
T KOG2307|consen 132 KKIELLDLI----YVLVAIEKLSKMLLSPPSK 159 (705)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHhcCCccc
Confidence 544444444 4688899999999876663
No 24
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=72.12 E-value=2e+02 Score=33.51 Aligned_cols=357 Identities=16% Similarity=0.187 Sum_probs=158.7
Q ss_pred HHhhHHHHhhhc---CCCCcccccCCCcchHHHHHHHHHHHHHhhhhHHHHhh---hhccCCCcccc---ccccccHHHH
Q 004390 284 NTVVAPLMQKII---PHGPSEALAGASGDELESDYEQIKQCVEKDCKFLLDIS---SAENSGLHVFD---FLANSILKEV 354 (757)
Q Consensus 284 ~~vV~P~l~~ii---~~~~l~~~~~~~~~~L~~~y~~il~fv~~~~~~ll~it---~~~~s~~~~~d---fl~nsvw~ev 354 (757)
+.++.|+..+-- .-..- -+.++.-+=.|+.|++.+..+...+.+.. -.. .+..++| =+.+++++.|
T Consensus 4 ~~l~~p~~~rF~yHF~~~r~----Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~-~~~~~~~~~~~fi~~ll~~~ 78 (494)
T PF04437_consen 4 DVLVNPFKKRFRYHFMGNRP----TNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDE-NGLTYIDAREEFIRGLLPPV 78 (494)
T ss_dssp HHHCHHHHHHHHHHT----S-------CCCHHHHHHHHHHHHHHH---HHHHHHHH-BG-GTB-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCC----cCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHh-cCCccccHHHHHHHHHHHHH
Confidence 346777776652 11110 13344456667778877777633333322 222 1222222 2357888888
Q ss_pred HHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhh---CC-CH-HHHHHHhhchhHHHHHhhhccchhHHHHHHHHHH
Q 004390 355 LSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGY---CP-SR-SAVAKFRAEAIYVEFMKQWNVGVYFSLRFQEIAG 429 (757)
Q Consensus 355 ~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~---c~-S~-~~v~~lR~~~~y~~f~~rWnLpVYFqlRfqEIa~ 429 (757)
.+.|...++. ...+|..|.--=-.++.|=++|-.. .+ .. ..+..|- +|.| ..+| .++..+--..
T Consensus 79 ~~Kl~~~l~~--~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~~~~vL~-~~~~---~~~W-----l~~E~~~a~~ 147 (494)
T PF04437_consen 79 REKLRSDLPE--LLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGSTLDVLC-QPDW---FDRW-----LNAEKEFALE 147 (494)
T ss_dssp HHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHTS---S------CGGGS--HHH---HHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHh--hccChhHHHHHHHHHHHHHHHHHHHcCCCCccchhHHHHhc-chHH---HHHH-----HHHHHHHHHH
Confidence 8888887762 5678888877777777887777663 33 11 1222222 3332 2555 2333333333
Q ss_pred hHHHhhhhcccccccCCCCCCCCCcccchhhH---HHHHHHHhhhcccCccccccch--HHH-HHHHHHHHHHHHHHhhh
Q 004390 430 ALDSALTAASLAPVQNSNSNQGNSQALTLKQS---VTLLDSMKSCWRQDVFLLPCSD--KFL-RLSLQLLSRYSNWLSSG 503 (757)
Q Consensus 430 ~lE~~L~~~~~~~~~~~~~~~~~~~~f~l~~s---~~l~~~l~~cWs~~Vfl~~L~~--rFw-kLtLQllsRy~~w~~~~ 503 (757)
++++.+..+..-....... ... .-.++++ ..+..-|+..-+----++.+.| ||+ ++-+.+|..|..++.+.
T Consensus 148 r~~~i~~s~~aw~~~~~~~-~~~--~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~ 224 (494)
T PF04437_consen 148 RFDEIISSPDAWQIDYDDV-EAD--SDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQS 224 (494)
T ss_dssp HHH---------------H-TTS--SGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHH
T ss_pred HHhhhcccchhhhhhhccc-cCC--chhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333110000000000 001 1122222 2222222222222233444444 558 88888999999888877
Q ss_pred hccccCCCCCCCCCCcccccCChhhHHHHHHhHHHHHHHhhh-----hHHHHHHHhhccCCh---hhHHHHH---H-HHH
Q 004390 504 LAARSSGHASFNPGNEWAISAAPDDFIYIIHDINCLATEVSG-----DYLTHVLQLLSSCSS---EVLDLVK---Q-SIL 571 (757)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Di~~L~~~i~~-----~~~~~i~~~l~~~~~---~~~~~~~---~-~l~ 571 (757)
+.+-... +++ ...-......+.++.++.=++-+...+.. .|++.-.......+. +...... . .+.
T Consensus 225 ~~~~~~~-~s~--~~~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFd 301 (494)
T PF04437_consen 225 LEAFESS-TST--LASLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFD 301 (494)
T ss_dssp HHHHHHT-------SCEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTH
T ss_pred HHHHhhc-ccc--hhhccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHH
Confidence 5542210 011 11111122345566666666666665554 123100000000000 0000000 1 134
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCC-----CCCCCCCcchHhhhHhHHHHHhccccccCCC
Q 004390 572 EGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNK-----PLPVRHSPYVSGVLRPLKTLLEGERAMTYLT 646 (757)
Q Consensus 572 e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk-----~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~ 646 (757)
+....++.+...+.+.|+..+...-...|+.-..... |+.- +.|..+|+-....|.-|+..+..-.. .|+
T Consensus 302 e~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~---W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~--~L~ 376 (494)
T PF04437_consen 302 ETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQ---WSSIESPSDSSPLSPSPELVPALSLLRSRLSFLER--SLP 376 (494)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--G---GGT-------------GGGHHHHHHHHHHHHHHHT--S--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccC---CCCcccccccccCCCCHHHHHHHHHHHHHHHHHHH--HcC
Confidence 4445555555555666666666655555554332211 3322 34688899998999999888876655 688
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004390 647 PEAKNELLLDAATQITSRYHE 667 (757)
Q Consensus 647 ~~~~~~~~~~v~~~v~~~Y~~ 667 (757)
+.....+...+++.+...+.+
T Consensus 377 ~~~f~~i~r~ia~~l~~~l~~ 397 (494)
T PF04437_consen 377 PADFRRIWRRIASKLDDYLWE 397 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877766
No 25
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=68.00 E-value=64 Score=38.12 Aligned_cols=163 Identities=13% Similarity=0.164 Sum_probs=88.3
Q ss_pred ChhhHHHHHHhHHHHHHHhhhhHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhc
Q 004390 525 APDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLK 604 (757)
Q Consensus 525 ~~~~~~~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~ 604 (757)
..+.+++++.|+..+...+.. +...+... .+.+....+...+.+..+.+..+.....+.+++.+...+...++.+-
T Consensus 314 ~~eyliA~~N~~~~~~~~~~~-l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lf 389 (566)
T PF06046_consen 314 YLEYLIAVANNCLRCRDYVES-LEQKFEEK---VSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLF 389 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHTT---S-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTT
T ss_pred hHHHHHHHhccHHHHHHHHHH-HHHhcccc---cchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Confidence 346789999999998875444 22222222 22112122233333333333333333333333333333333332221
Q ss_pred chhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 004390 605 GITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLL 684 (757)
Q Consensus 605 ~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~ 684 (757)
|++=.-. ..|..|+.-+..|....+. ++.+...+.++..+...+...|... ++. +
T Consensus 390 --------t~~W~~~---~~~~~I~~Ti~dY~~d~~~--~l~~~~~~~l~~~~~~~~v~~Yl~~---l~~---------k 444 (566)
T PF06046_consen 390 --------TKKWYSG---EAVDTICATIEDYLQDFQH--YLRPPYFQELIEELHDRVVKEYLRA---LMK---------K 444 (566)
T ss_dssp --------SGGGCTS----HHHHHHHHHHHHHHHHCC--CS-HHHHHHHHHHHHHHHHHHHHHG---GGG----------
T ss_pred --------cCcCcCc---chHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHH---HHH---------h
Confidence 2211111 7789999999999987765 6899999999999999999999874 221 2
Q ss_pred HHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC
Q 004390 685 KIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALG 730 (757)
Q Consensus 685 RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lg 730 (757)
|++=+. ..+.++.--||..|++.+.....+++
T Consensus 445 k~~~~~--------------~~~~~~~a~~i~~D~~~l~~~F~~~~ 476 (566)
T PF06046_consen 445 KIKFKN--------------KEERKEAAERIRRDAEQLKSFFSKLG 476 (566)
T ss_dssp ----------------------CCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred hhhccc--------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211000 11223344566788888888888887
No 26
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.79 E-value=2.6e+02 Score=33.05 Aligned_cols=107 Identities=21% Similarity=0.296 Sum_probs=73.9
Q ss_pred ChHHHHHhccCCCChHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHH
Q 004390 40 DSESYISELRTFVPFETLRSE---LQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRG 116 (757)
Q Consensus 40 dvd~FL~~~rr~~sLe~Lr~d---Lr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~ 116 (757)
+.+.||.++ ..-++|.|+++ |.+=.+.+..++-+|-=.||-.|+..+.+....-....+++.++.++--++.+...
T Consensus 20 ~~~~~v~~l-~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s 98 (581)
T KOG2069|consen 20 EMDAYVREL-TTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTS 98 (581)
T ss_pred hhHHHHHHH-cCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhh
Confidence 456788874 34467777664 66777788999999999999999999988888888888888888777665554444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 117 ALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSK 154 (757)
Q Consensus 117 ~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~k 154 (757)
...+..+ ....|.+.+.+-.++++.+..+..
T Consensus 99 ~~~~f~~-------~~~~i~e~~~~~~~~l~~~~~l~e 129 (581)
T KOG2069|consen 99 PCKRFQD-------FAEEISEHRRLNSLTLDKHPQLLE 129 (581)
T ss_pred HHHHHHH-------HHHHhhHhHHHHHHHHhhcchhHH
Confidence 4443333 345555666555555555544433
No 27
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.31 E-value=3e+02 Score=33.71 Aligned_cols=550 Identities=15% Similarity=0.159 Sum_probs=258.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004390 53 PFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR 132 (757)
Q Consensus 53 sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r 132 (757)
-.+.+-..|...-..=..|+-++=|..|+||+.==+.|.++...+..++..+..+..++.++-.++-...+++-++=.+.
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666667788899999999999876666666555555555555555555555555555555554444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCCcc--CCccccchhhhHHHHHH-
Q 004390 133 SEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVE--NGTNVRETQSMLLERIA- 209 (757)
Q Consensus 133 ~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~LeR~a- 209 (757)
+.|.++-.++.+++.+-+.++|+...+.+-.--|+- .-.++-+....-. ++.-.+. ....+ ...-..+++..
T Consensus 125 rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aL---ktle~lE~~yL~~-~~~~~~~~~i~~~I-p~ik~~i~~~~~ 199 (800)
T KOG2176|consen 125 RNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPAL---KTLESLEKVYLPR-VSNFRFLIVIQNRI-PFIKEVIKSKSM 199 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHHHHh-cccchhhHHHhhcc-hHHHHHHHHHHH
Confidence 667788889999999999999998887431100000 0000000000000 0000000 00000 00001122211
Q ss_pred HHHHHHHHHHHhhcCCcchHhHHHHHHHHHHHHHHHHh-------------HHHH----Hhhh-----------------
Q 004390 210 SEMNRLKFYIAHAQNLPFIENMEKRIKSASLLLDASLG-------------HCFV----HGLE----------------- 255 (757)
Q Consensus 210 ~e~~~L~~~~~~~~~~pfv~~~~~Ri~~i~~~L~~~L~-------------~~l~----~~~~----------------- 255 (757)
.++..- +.+..+..|-+.+. -|...+....+..+ +.++ .+..
T Consensus 200 ~~~~e~--L~~irk~s~~iGq~--ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e~d~~~~s~~~~~~~~ 275 (800)
T KOG2176|consen 200 SDFREW--LENIRKKSPKIGQT--AIQQAKEARQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFEEDDEHDSIMIFQDLN 275 (800)
T ss_pred HHHHHH--HHHHHhhhHHHHHH--HHHHHHHHHHHHHHHhhhccchHHHhhhhhHHHHhcccccccccccccchhccCcc
Confidence 122111 11112222222211 11111111121111 0000 0110
Q ss_pred -------hcChHHHHHHHHHHHHhcchhhHHHHHHHHhhHHHHhhhcCCCCcccccCCCcchHHHHHHHHHHHHHhhhhH
Q 004390 256 -------HQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESDYEQIKQCVEKDCKF 328 (757)
Q Consensus 256 -------~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~vV~P~l~~ii~~~~l~~~~~~~~~~L~~~y~~il~fv~~~~~~ 328 (757)
.-+-+-+++|+++|..+|.....+.-++..--.- .+..+.. +. ++ -.+..|+..-+++|.=|.-..- .
T Consensus 276 ~~~~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q-~~~~~q~-~~-t~-~~~l~~~~ty~~~i~Gffived-~ 350 (800)
T KOG2176|consen 276 ELSGAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQ-ADLVLQP-PF-TQ-LDSLEGYQTYFNQIAGFFIVED-H 350 (800)
T ss_pred cccchheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHh-hhcccCC-Cc-ch-hhHHHHHHHHHHHHhhHHHHHH-H
Confidence 0023469999999999999998888887654333 1111111 10 00 1234566666677666542211 1
Q ss_pred HHHhhhhccCCCccccccccccHHHHHHHHHhcCCc-cccCCCchHHHHHHHHHHHHHHHHHhhCCCHHHH----HHHhh
Q 004390 329 LLDISSAENSGLHVFDFLANSILKEVLSAIQKGKPG-AFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAV----AKFRA 403 (757)
Q Consensus 329 ll~it~~~~s~~~~~dfl~nsvw~ev~~~l~~~l~~-iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~S~~~v----~~lR~ 403 (757)
++.-+ + +...++ =++-+|.-.++.+...+.+ .+---.|..-.+==..-+-+...||.+-=+.+.+ -.+|.
T Consensus 351 il~t~---~-~~~s~~-~ve~lW~~~i~k~v~~L~~~~s~~~t~~~ll~lKd~i~L~~~tl~~yg~~V~~l~~~l~~~rd 425 (800)
T KOG2176|consen 351 ILRTT---G-GFLSYN-EVEELWDTAISKLVATLSYQSSRCQTPNHLLKLKDLIVLLGATLENYGFNVEPLYDLLVEIRD 425 (800)
T ss_pred HHHhh---h-cccchH-HHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHhHHHHHHHHHHHcCCchhHHHHHHHHHHh
Confidence 11111 1 222222 2467888888877777765 3444455544433333344556677655554433 23343
Q ss_pred chhHHHHHhhhccchhHHHHHHHHHHhHHHhhhhccccccc-----------------CCCC-CCCCC--------cccc
Q 004390 404 EAIYVEFMKQWNVGVYFSLRFQEIAGALDSALTAASLAPVQ-----------------NSNS-NQGNS--------QALT 457 (757)
Q Consensus 404 ~~~y~~f~~rWnLpVYFqlRfqEIa~~lE~~L~~~~~~~~~-----------------~~~~-~~~~~--------~~f~ 457 (757)
+ |-..-++...+.++.+|....+.|.. +.+. ...-+ .++.
T Consensus 426 k--------------y~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP~~ 491 (800)
T KOG2176|consen 426 K--------------YHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVPDV 491 (800)
T ss_pred h--------------HHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCchH
Confidence 3 23333444555566666543333321 0000 00000 0111
Q ss_pred hhhHHHHHHHHhhhcc---cCccc-cccchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHH
Q 004390 458 LKQSVTLLDSMKSCWR---QDVFL-LPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYII 533 (757)
Q Consensus 458 l~~s~~l~~~l~~cWs---~~Vfl-~~L~~rFwkLtLQllsRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 533 (757)
+.+ +-.-+..|.. +.+-. .+..+|=.+-+.-++-|=-. +. . + ...++....+...+.
T Consensus 492 c~~---~k~fi~~~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~v-l~-----~----~------~~~~~~~lsq~~QI~ 552 (800)
T KOG2176|consen 492 CTQ---AKKFIYACVKFLSDLVLLETEVLNKIRKDTNLLLTRSLV-LS-----L----T------SSLPSLNLSQAMQIA 552 (800)
T ss_pred HHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HH-----H----H------HhcccccHHHHHHHH
Confidence 111 1122222222 11111 01112222222222222111 00 0 0 011223445666777
Q ss_pred HhHHHHHHHhhhhHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhcc
Q 004390 534 HDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMT 613 (757)
Q Consensus 534 ~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~T 613 (757)
+++..++-...- |.+++....+.+.... +..+.+ ..-+. -.+..-..+...-...++-.-.+. .|=||
T Consensus 553 ~n~~~fe~a~~~-f~~~a~~~~~~~~~~~-e~~~~s----~~l~~-----sr~~Ae~~l~~~i~~Kid~f~~l~-~~dW~ 620 (800)
T KOG2176|consen 553 ANLDYFEIAADF-FLEFACHLNGIPNRDA-ERPSSS----TKLLA-----SRKLAETELIELIKLKIDDFLELI-EYDWT 620 (800)
T ss_pred HHHHHHHHhhHH-HHHHHHHccCCccccc-cccccc----hhhhh-----hhhhHHHHHHHHHhhhhHHHHHHh-hcccc
Confidence 776655443333 4444444322111111 000000 00000 111222333444444555555666 79999
Q ss_pred CCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHH
Q 004390 614 NKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHEL 668 (757)
Q Consensus 614 nk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~ 668 (757)
--++|--||.|+-.++.-|+.-...... .||..+.+-....++++++.....+
T Consensus 621 t~e~pq~~~~~i~e~~~yLet~~~s~~q--~LP~~v~~~v~~~~~~his~~iv~l 673 (800)
T KOG2176|consen 621 TTEVPQGPSEYINEMLIYLETMFSSALQ--ILPYKVAQLVCLRELDHISTSIVGL 673 (800)
T ss_pred ccccCCCccHHHHHHHHHHHHHHHHHHh--hCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887766655 7898888888899999999888874
No 28
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.87 E-value=56 Score=40.03 Aligned_cols=109 Identities=17% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCCCCCChHHHHHhccCCCChHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhH-----
Q 004390 33 LFLSPNFDSESYISELRTFVPFETLRSEL---QAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPL----- 104 (757)
Q Consensus 33 ~F~~~dFdvd~FL~~~rr~~sLe~Lr~dL---r~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL----- 104 (757)
+|.+++|+|.=||.+.+.-++.|+|+.-+ ..|.+.=+.-=..++|.|+..||+==+.|-.+..++++.....
T Consensus 165 Dl~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t 244 (934)
T KOG2347|consen 165 DLRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGT 244 (934)
T ss_pred ccccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHH
Confidence 38889999999999999999999998754 4555555556688999999999998888888888888744322
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 105 LELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLEL 144 (757)
Q Consensus 105 ~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~l 144 (757)
..+..-++.+. ..+...-++.|+++.++..-|..|-+
T Consensus 245 ~~l~n~i~~~~---s~ad~iF~~vl~Rk~~ADstRsvL~~ 281 (934)
T KOG2347|consen 245 TKLENCIKNST---SRADLIFEDVLERKDKADSTRSVLGV 281 (934)
T ss_pred HHHHHHHHHhh---hHHHHHHHHHHhcccccccHHHHHHH
Confidence 22333333322 22222335566666666666665554
No 29
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.85 E-value=78 Score=34.71 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHH
Q 004390 50 TFVPFETLRSELQAHLSSLNHE 71 (757)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~e 71 (757)
|-+-++.|...|......|+++
T Consensus 138 R~kllegLk~~L~~~~~~l~~D 159 (312)
T smart00787 138 RMKLLEGLKEGLDENLEGLKED 159 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334777777777766666654
No 30
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=64.62 E-value=25 Score=41.14 Aligned_cols=76 Identities=17% Similarity=0.265 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCC-------cHHHHHHhhchhHHHHHHHHHHHHHHHHhH---HHHHHHH
Q 004390 59 SELQAHLSSLNHELIDLINRDYADFVNLSTKLV-------DVDAAVVRMRAPLLELREKIDGFRGALEGS---LVALQNG 128 (757)
Q Consensus 59 ~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~-------G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~---~~~l~~~ 128 (757)
.+||.|.+.+++++-+.=++--+||+..|.++. ..|..+++|..-|.+|+.++...-.++... .++++-.
T Consensus 46 ~~lr~y~~~ve~~l~k~e~~Siqdyi~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~ 125 (683)
T KOG1961|consen 46 DDLREYSKQVENELRKAERKSIQDYIKESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLR 125 (683)
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHH
Confidence 478999999999999999888888887776554 567777788877888887777766655433 3444544
Q ss_pred HHHHHH
Q 004390 129 LKQRSE 134 (757)
Q Consensus 129 L~~r~~ 134 (757)
|+.|+.
T Consensus 126 L~Nrq~ 131 (683)
T KOG1961|consen 126 LENRQA 131 (683)
T ss_pred HHhHHH
Confidence 544443
No 31
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=59.05 E-value=1.3e+02 Score=33.15 Aligned_cols=36 Identities=14% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHh
Q 004390 50 TFVPFETLRSELQAHLSSLNHEL------IDLINRDYADFVN 85 (757)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eL------veLIN~DY~dFv~ 85 (757)
|..-++.|+..|......|++.. ++.||.-+.+..+
T Consensus 143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~ 184 (325)
T PF08317_consen 143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRE 184 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888777653 4445555544443
No 32
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.64 E-value=2.1e+02 Score=28.53 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHH
Q 004390 55 ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (757)
Q Consensus 55 e~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~ 124 (757)
+.=.++++.|...+..++-++-+..|.+= ..+....+.+..+......+.+++...+.++.+...+
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~ 159 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELR----ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREE 159 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666655555554432 3444455555555555555555555555333333333
No 33
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=54.40 E-value=1.2e+02 Score=28.72 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=22.8
Q ss_pred cHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 004390 92 DVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQ 131 (757)
Q Consensus 92 G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~ 131 (757)
++.++++.+..-|.++-+.|...|..+...++.+..+|++
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe 79 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDE 79 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4445555555555555555556666665555555555554
No 34
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=52.82 E-value=68 Score=35.35 Aligned_cols=53 Identities=8% Similarity=0.137 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhHHHHHhhhhcChHHHHHHHHHHHHhcchhhHHHHHHHHhhH
Q 004390 236 KSASLLLDASLGHCFVHGLEHQNANVIYNCLRAYAAIDNTRNAEEIFCNTVVA 288 (757)
Q Consensus 236 ~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~vV~ 288 (757)
+.++..|..-+.+-|.++.+.+|...+.++-++|-.||..+++.+++-+.|..
T Consensus 2 ~~a~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~ 54 (331)
T PF08318_consen 2 DEARESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCD 54 (331)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHH
Confidence 45677788888889999999999999999999999999999999999886643
No 35
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.05 E-value=2.7e+02 Score=29.54 Aligned_cols=85 Identities=21% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCccCcCCCCCCCCChHHHHHhccCCCChHHHHHHHHHHH---HHHHHHHHHHHhh----hHHHHHhhhcCCCcHHHHHH
Q 004390 26 PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHL---SSLNHELIDLINR----DYADFVNLSTKLVDVDAAVV 98 (757)
Q Consensus 26 ~l~F~~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~---~~L~~eLveLIN~----DY~dFv~Lss~L~G~d~~i~ 98 (757)
|+|. +....|=....+.. .|-.++.+|.... +.|+.++-+++.. +...-..+-..+......+.
T Consensus 3 ~iC~----~~~~~~~C~~C~~~-----~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~ 73 (302)
T PF10186_consen 3 PICH----NSRRRFYCANCVNN-----RLLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLE 73 (302)
T ss_pred CCCC----CCCCCeECHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4565 34445556666654 1555555554433 2344444444431 22233333333333334444
Q ss_pred hhchhHHHHHHHHHHHHHHHH
Q 004390 99 RMRAPLLELREKIDGFRGALE 119 (757)
Q Consensus 99 ~l~~pL~~l~~~V~~~r~~v~ 119 (757)
.++.-+...+++|...+..+.
T Consensus 74 ~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 74 RLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443333333
No 36
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=47.72 E-value=5.9e+02 Score=30.91 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=63.1
Q ss_pred CCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCC
Q 004390 616 PLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAG 695 (757)
Q Consensus 616 ~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g 695 (757)
..|..||.||.+.+.-+.+-++....+ .|++.+.++++...+..++-.|-. +..++.|+.|
T Consensus 638 rLPsqPslyiqSfL~rl~qeInrvggh-~Lp~~vLQ~f~~sl~~k~~~~YE~-----l~~a~~~kas------------- 698 (863)
T KOG2033|consen 638 RLPSQPSLYIQSFLQRLHQEINRVGGH-TLPPKVLQAFIQSLIGKLLCHYEG-----LAHAECTKAS------------- 698 (863)
T ss_pred ecCCCccHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHH-------------
Confidence 489999999999999998888766554 799999999999999999999988 4555554321
Q ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 004390 696 ASSDVSDHNVSDTDKICMQLFLDIQEYGRSLA 727 (757)
Q Consensus 696 ~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~ 727 (757)
+||-+||++|..+...-+.
T Consensus 699 -------------qn~aLQll~DLrfl~~Vl~ 717 (863)
T KOG2033|consen 699 -------------QNIALQLLFDLRFLERVLA 717 (863)
T ss_pred -------------HhhHHHHHHHHHHHHHHHh
Confidence 5677888888876655443
No 37
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.15 E-value=4.3e+02 Score=30.06 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=14.2
Q ss_pred hhcC-CcchHhHHHHHHHHH
Q 004390 221 HAQN-LPFIENMEKRIKSAS 239 (757)
Q Consensus 221 ~~~~-~pfv~~~~~Ri~~i~ 239 (757)
+.++ ...++..+.||.+++
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 3444 457788899999998
No 38
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.90 E-value=2.2e+02 Score=29.89 Aligned_cols=55 Identities=24% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhh
Q 004390 107 LREKIDGFRGALEGSLVALQNGLKQRSEAASAR-EVLELLLDTFHVVSKVEKLIKE 161 (757)
Q Consensus 107 l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k-~~L~lll~~~~~v~klE~ll~~ 161 (757)
++.+|...-+.++..-.-|++.-+++..|...| +.++.|.+|..=+..||..+..
T Consensus 16 ~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkq 71 (230)
T PF10146_consen 16 LKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQ 71 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343333444444445555556666666555 4667777888888889998854
No 39
>PF09033 DFF-C: DNA Fragmentation factor 45kDa, C terminal domain; InterPro: IPR015121 The C-terminal domain of DNA fragmentation factor 45 kDa (DFF-C) consists of four alpha-helices, which are folded in a helix-packing arrangement, with alpha-2 and alpha-3 packing against a long C-terminal helix (alpha-4). The main function of this domain is the inhibition of DFF40 by binding to its C-terminal catalytic domain through ionic interactions, thereby inhibiting the fragmentation of DNA in the apoptotic process. In addition to blocking the DNase activity of DFF40, the C-terminal region of DFF45 is also important for the DFF40-specific folding chaperone activity, as demonstrated by the ability of DFF45 to refold DFF40 []. ; PDB: 1KOY_A 1IYR_A.
Probab=43.10 E-value=8 Score=37.25 Aligned_cols=49 Identities=24% Similarity=0.407 Sum_probs=0.0
Q ss_pred hchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 100 MRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDT 148 (757)
Q Consensus 100 l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~ 148 (757)
|-+|-..+-.++......++..++.++..|.+|.+.|..|.+|+++|..
T Consensus 52 iDvpcsdLA~el~qs~~k~q~LQ~TLQqVLDrREE~RQSkqLLeLYL~A 100 (164)
T PF09033_consen 52 IDVPCSDLAQELGQSCAKVQGLQNTLQQVLDRREEERQSKQLLELYLQA 100 (164)
T ss_dssp -------------------------------------------------
T ss_pred hCCChHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888889999999999999999999999999999996643
No 40
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=42.34 E-value=6.3e+02 Score=29.65 Aligned_cols=42 Identities=10% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHH
Q 004390 82 DFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLV 123 (757)
Q Consensus 82 dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~ 123 (757)
+|..|...+...|..+..|..=|..|+.++.++-+++...++
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~ 56 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQE 56 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777777777777777777777777665543
No 41
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=41.91 E-value=2e+02 Score=25.60 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHH
Q 004390 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (757)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~ 124 (757)
|+.|...+..|...+...+ . .-+-.++.+...-+..++..|...+.-+..++.++...+..+.+...+
T Consensus 21 l~~L~~~~~~~~~~~~~~~-~--~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~ 88 (123)
T PF02050_consen 21 LEQLQQERQEYQEQLSESQ-Q--GVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRE 88 (123)
T ss_dssp HHHHHHHHHHHHHT------S--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc-C--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333 1 223355555555555666666666666666666666555555554443
No 42
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.20 E-value=1.5e+02 Score=31.73 Aligned_cols=104 Identities=20% Similarity=0.397 Sum_probs=53.5
Q ss_pred ChHHHHHhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHH-----HHHhh--chhHHHHHHHH
Q 004390 40 DSESYISELR-TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDA-----AVVRM--RAPLLELREKI 111 (757)
Q Consensus 40 dvd~FL~~~r-r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~-----~i~~l--~~pL~~l~~~V 111 (757)
+|++||.=+. +-|..--||.-|++--..|.. +| ..-..|=+.|--|.+ .-.++ +-.|.+.|++|
T Consensus 55 ~PEQYLTPLQQKEV~iRHLkakLkes~~~l~d-------Re-tEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEI 126 (305)
T PF15290_consen 55 NPEQYLTPLQQKEVCIRHLKAKLKESENRLHD-------RE-TEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEI 126 (305)
T ss_pred CHHHhcChHHHHHHHHHHHHHHHHHHHHHHHh-------hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999998654 445555555544443333322 11 123333333333321 11111 23556666777
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004390 112 DGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIK 160 (757)
Q Consensus 112 ~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~ 160 (757)
.+.|..|+. +++.|.++ -|-..+...+|.-.=.|||.||.
T Consensus 127 kQLkQvieT----mrssL~ek-----DkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 127 KQLKQVIET----MRSSLAEK-----DKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HHHHHHHHH----HHhhhchh-----hhhHHHHHhhhhhhHhHHHHHHH
Confidence 666666653 33333333 23455666677777778999986
No 43
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=40.49 E-value=5.1e+02 Score=28.12 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 004390 205 LERIASEMNRLKFYI 219 (757)
Q Consensus 205 LeR~a~e~~~L~~~~ 219 (757)
|.|+.+...+++..+
T Consensus 222 l~RL~sHl~~f~~~L 236 (291)
T TIGR00255 222 IDRLDSHVKEFYNIL 236 (291)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 44
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=39.47 E-value=1.6e+02 Score=28.27 Aligned_cols=75 Identities=13% Similarity=0.255 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHH
Q 004390 50 TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (757)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~ 124 (757)
+...++.+++.+..-++.+=++=.+-.|+--+.|-.+++.+.+-.+.|..++.-|..-+..+...+.++.+...+
T Consensus 41 ~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~ 115 (142)
T PF04048_consen 41 RYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQR 115 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 566789999999999999999999999999999999999999999999999999999999999999999987765
No 45
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=39.35 E-value=78 Score=25.10 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004390 52 VPFETLRSELQAHLSSLNHELIDLINRDYADFV 84 (757)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv 84 (757)
.++|.-.+.|+.-+..=++|+++-||..|+.-+
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiL 39 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEILSNLNMEYEKIL 39 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888999999999999998754
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=39.04 E-value=4.2e+02 Score=35.05 Aligned_cols=95 Identities=13% Similarity=0.235 Sum_probs=62.9
Q ss_pred CCccCcCCCCCCCCChHHHHHhcc-CCCC----hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cCCCcHHHHHHh
Q 004390 26 PLWFKSNLFLSPNFDSESYISELR-TFVP----FETLRSELQAHLSSLNHELIDLINRDYADFVNLS-TKLVDVDAAVVR 99 (757)
Q Consensus 26 ~l~F~~~~F~~~dFdvd~FL~~~r-r~~s----Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Ls-s~L~G~d~~i~~ 99 (757)
||| ...|..++. .+.|+.++. .--+ .+.+..++...-+.+.. +.-++.+|..+..+. ..+....+.+..
T Consensus 681 ~LC--~R~f~~eee-~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~--l~~l~~~~~~~~~l~~~eip~l~~~l~~ 755 (1311)
T TIGR00606 681 PVC--QRVFQTEAE-LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDE--MLGLAPGRQSIIDLKEKEIPELRNKLQK 755 (1311)
T ss_pred CCC--CCCCCChhH-HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHhhchhHHHHHHH
Confidence 555 445655554 578887775 2233 44444444443333333 555688999999996 789999998888
Q ss_pred hchhHHHHHHHHHHHHHHHHhHHHHH
Q 004390 100 MRAPLLELREKIDGFRGALEGSLVAL 125 (757)
Q Consensus 100 l~~pL~~l~~~V~~~r~~v~~~~~~l 125 (757)
+..-+..++.++......+.....++
T Consensus 756 le~~l~~~~~~le~~~~~l~~~~~~~ 781 (1311)
T TIGR00606 756 VNRDIQRLKNDIEEQETLLGTIMPEE 781 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 88888877777777776666655554
No 47
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=37.29 E-value=2.4e+02 Score=24.61 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=12.6
Q ss_pred HHHHHhhchhHHHHHHHHHHHHHHHHhHHHH
Q 004390 94 DAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (757)
Q Consensus 94 d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~ 124 (757)
.+.+.+++.-+..+++++.....++......
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~ 55 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHN 55 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433333
No 48
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.88 E-value=6.4e+02 Score=27.62 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH----HHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 004390 57 LRSELQAHLSSLNHELIDLINRDYAD----FVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQR 132 (757)
Q Consensus 57 Lr~dLr~y~~~L~~eLveLIN~DY~d----Fv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r 132 (757)
|-++|..-+..|+.|-++|=|.-=++ +-.|-..|..+.......+.-|..++++--.....++.....|-+.|.+|
T Consensus 107 ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kq 186 (310)
T PF09755_consen 107 LTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQ 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555543332 22455555554444445555555555555555555665566666666555
Q ss_pred -HHHHHHHHHHH
Q 004390 133 -SEAASAREVLE 143 (757)
Q Consensus 133 -~~l~~~k~~L~ 143 (757)
.++...|+.|+
T Consensus 187 m~~l~~eKr~Lq 198 (310)
T PF09755_consen 187 MDKLEAEKRRLQ 198 (310)
T ss_pred HHHHHHHHHHHH
Confidence 55555555555
No 49
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=34.56 E-value=7.4e+02 Score=28.24 Aligned_cols=73 Identities=16% Similarity=0.278 Sum_probs=53.3
Q ss_pred CCCChHHHHHhccCCCC----------hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCC--cHHHHHHhhchhH
Q 004390 37 PNFDSESYISELRTFVP----------FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLV--DVDAAVVRMRAPL 104 (757)
Q Consensus 37 ~dFdvd~FL~~~rr~~s----------Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~--G~d~~i~~l~~pL 104 (757)
.||....|++++|-.+| .++++..|..+...|...|-..++.....+-+|...|. .-...+...+.-|
T Consensus 235 ~D~tl~D~vAd~ra~TPtaaae~~~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L 314 (438)
T PRK00286 235 TDFTIADFVADLRAPTPTAAAELAVPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRL 314 (438)
T ss_pred CCccHHHHhhhccCCChHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHH
Confidence 47788888888764444 67888999999999999999999999999988888874 3344444444444
Q ss_pred HHHHH
Q 004390 105 LELRE 109 (757)
Q Consensus 105 ~~l~~ 109 (757)
..+..
T Consensus 315 ~~l~~ 319 (438)
T PRK00286 315 DRLQQ 319 (438)
T ss_pred HHHHH
Confidence 33333
No 50
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=33.22 E-value=2.1e+02 Score=25.19 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHh
Q 004390 56 TLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEG 120 (757)
Q Consensus 56 ~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~ 120 (757)
.++...-..++.=+.+|.++.+.==+-|-.+......+-+.+.+|+..|..+.++|..++..+..
T Consensus 18 ~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 18 ALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888665555688888888999999999999999999988888777653
No 51
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=32.66 E-value=8.7e+02 Score=28.44 Aligned_cols=188 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHH
Q 004390 54 FETLRSELQAHLSSLNHE--------LIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVAL 125 (757)
Q Consensus 54 Le~Lr~dLr~y~~~L~~e--------LveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l 125 (757)
+-++|.-...|...++.+ +.+-+++=..+|..+=..+.+.+--+-+++.. ..+......++..+...-..+
T Consensus 236 i~~i~~~~~~f~~l~~~~~~g~~g~~~~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~-~~w~~~~~~f~~~i~~lE~~l 314 (579)
T PF08385_consen 236 IKEIRETHEQFSRLLKSEFGGLRGKELSEGIDEIEEEFNEAYEPFKSLDYDILDVSNE-EEWERDFSEFRERIEDLERRL 314 (579)
T ss_pred HHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHhcCCCCcCCCcch-hhHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCCccCCccccchhhhH
Q 004390 126 QNGLKQR-SEAASAREVLELLLDTFHVVSKVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQSML 204 (757)
Q Consensus 126 ~~~L~~r-~~l~~~k~~L~lll~~~~~v~klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (757)
...|... ........+++++......+ .-+.+-..+.. ....+
T Consensus 315 ~~~l~~~f~~~~s~~~~~~ll~~f~~L~-~Rp~I~~~l~~-----------------------------------~~~~l 358 (579)
T PF08385_consen 315 ANILRQAFDDCSSPEEAFRLLQKFKSLL-NRPRIRKALQE-----------------------------------KYEQL 358 (579)
T ss_pred HHHHHHHhcCcCCHHHHHHHHHHHHhHh-cchHHHHHHHH-----------------------------------HHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhc------------CCcc-------hHhHHHHHHHHHHHHHHHHhHHHHHhhhhcChHHHHHH
Q 004390 205 LERIASEMNRLKFYIAHAQ------------NLPF-------IENMEKRIKSASLLLDASLGHCFVHGLEHQNANVIYNC 265 (757)
Q Consensus 205 LeR~a~e~~~L~~~~~~~~------------~~pf-------v~~~~~Ri~~i~~~L~~~L~~~l~~~~~~~~~~~l~~~ 265 (757)
|.++..|..+++-...... ++|- ..++..||......+...++..+ .+...-..+
T Consensus 359 l~~~~~ei~~~~~~f~~~~~~~~~~~~~~~~~~Ppvag~i~w~r~L~~ri~~~~~~~~~~~g~~~------~~~~~~~~~ 432 (579)
T PF08385_consen 359 LQQFKEEIDQLKKIFDNQKEKSETDNPPLPRNLPPVAGAIIWARQLERRIKEPMQRLKSLLGPDW------LDSPEGKEL 432 (579)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccccCCcHHHHHHHHHHHHHHHHhHHHHHHHHhccchh------hcchhHHHH
Q ss_pred HHHHHHhcchhhH--HHHHHH
Q 004390 266 LRAYAAIDNTRNA--EEIFCN 284 (757)
Q Consensus 266 Lr~Y~~l~~~~~a--e~~~r~ 284 (757)
.+.|..+.+.=+. .+.+..
T Consensus 433 ~~~~~~l~~~l~~~e~~~~~~ 453 (579)
T PF08385_consen 433 KQKYNELLKKLDEYEKEIFEE 453 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=31.61 E-value=6e+02 Score=31.75 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHH-HhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHH
Q 004390 60 ELQAHLSSLNHELIDL-INRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALE 119 (757)
Q Consensus 60 dLr~y~~~L~~eLveL-IN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~ 119 (757)
++...+..+++.+=+| -+=|.++|=.|...+......+..+..-+..++.++......+.
T Consensus 624 ~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~ 684 (880)
T PRK02224 624 ERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIG 684 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444333 11233445566666666666666665555555555555444444
No 53
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=31.56 E-value=5e+02 Score=25.38 Aligned_cols=68 Identities=13% Similarity=0.134 Sum_probs=53.7
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004390 93 VDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLELLLDTFHVVSKVEKLIK 160 (757)
Q Consensus 93 ~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE~ll~ 160 (757)
+-+.++.+..-|..++.+-..|.....+.....+..+.++.++...-+-+.-.|.+++.++.+.+.|.
T Consensus 19 ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln 86 (157)
T PF04136_consen 19 LLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLN 86 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHc
Confidence 33445555566777777777888888888888888899999998888888888889988888888874
No 54
>PLN03242 diacylglycerol o-acyltransferase; Provisional
Probab=30.54 E-value=23 Score=40.15 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=17.5
Q ss_pred hchhHHHHHhhhccchhHHHH
Q 004390 403 AEAIYVEFMKQWNVGVYFSLR 423 (757)
Q Consensus 403 ~~~~y~~f~~rWnLpVYFqlR 423 (757)
++.++.+|.++||.|||-=+.
T Consensus 299 Ns~s~~eywR~WN~PVH~fl~ 319 (410)
T PLN03242 299 NASEVSEYWRLWNMPVHYWLV 319 (410)
T ss_pred ccCcHHHHHHHcchHHHHHHH
Confidence 567888999999999986554
No 55
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=30.30 E-value=5.6e+02 Score=31.02 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=32.2
Q ss_pred hHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHH
Q 004390 79 DYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVAL 125 (757)
Q Consensus 79 DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l 125 (757)
+..++-.|-..+...+..+..++.-+..+..++...+..++....++
T Consensus 419 ~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 419 SEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566667777777777777777777777777777766666655544
No 56
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=29.87 E-value=1.4e+02 Score=24.06 Aligned_cols=30 Identities=7% Similarity=0.222 Sum_probs=15.4
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHhHH
Q 004390 93 VDAAVVRMRAPLLELREKIDGFRGALEGSL 122 (757)
Q Consensus 93 ~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~ 122 (757)
++..+.++..-+..+|++.++++..+++.-
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~ 34 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIE 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555433
No 57
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=29.35 E-value=1.2e+03 Score=29.07 Aligned_cols=33 Identities=12% Similarity=0.323 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004390 52 VPFETLRSELQAHLSSLNHELIDLINRDYADFV 84 (757)
Q Consensus 52 ~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv 84 (757)
..+..--+|++.|++....++-.++++||....
T Consensus 176 ~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~ 208 (806)
T PF05478_consen 176 NTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELK 208 (806)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 356666789999999999999999999998864
No 58
>PRK11820 hypothetical protein; Provisional
Probab=29.18 E-value=7.7e+02 Score=26.74 Aligned_cols=10 Identities=40% Similarity=0.690 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004390 205 LERIASEMNR 214 (757)
Q Consensus 205 LeR~a~e~~~ 214 (757)
|+=+.+|+|+
T Consensus 243 LDFL~QEm~R 252 (288)
T PRK11820 243 LDFLMQELNR 252 (288)
T ss_pred hhHHHHHHhH
Confidence 3334444433
No 59
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=29.16 E-value=5.8e+02 Score=25.29 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q 004390 51 FVPFETLRSELQAHLSSLNHELIDLI 76 (757)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLveLI 76 (757)
...+..|..+++.|......-....+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 39 EESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 34567788888888887777666655
No 60
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.99 E-value=5.8e+02 Score=25.29 Aligned_cols=68 Identities=22% Similarity=0.240 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 004390 58 RSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGL 129 (757)
Q Consensus 58 r~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L 129 (757)
-.++...++.+.+|+.++=+.-++-.-.+. ...+.....+.-+...++++...+..+.+...++.+..
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELE----KLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666777777776555554433332 22222222223334444445444444444444444333
No 61
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=28.99 E-value=1e+02 Score=25.03 Aligned_cols=26 Identities=12% Similarity=0.259 Sum_probs=11.0
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHhHH
Q 004390 97 VVRMRAPLLELREKIDGFRGALEGSL 122 (757)
Q Consensus 97 i~~l~~pL~~l~~~V~~~r~~v~~~~ 122 (757)
|..+...+..|..+|..+..++....
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 62
>PF05363 Herpes_US12: Herpesvirus US12 family; InterPro: IPR008026 ICP47 (US12) is a key factor in the evasion of cellular immune response against Human herpesvirus 1 (HHV-1) (Human herpes simplex virus 1)-infected cells. Specific inhibition of the transporter associated with antigen processing (TAP) by ICP47 prevents peptide transport into the endoplasmic reticulum and subsequent loading of major histocompatibility complex (MHC) class I molecules []. ICP47 is comprised of three helices and is associated with cellular membranes [].; GO: 0019049 evasion of host defenses by virus; PDB: 1QLO_A.
Probab=28.83 E-value=48 Score=28.42 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=18.2
Q ss_pred hHHHHHhcc-CCCChHHHHHHHHHHHHH
Q 004390 41 SESYISELR-TFVPFETLRSELQAHLSS 67 (757)
Q Consensus 41 vd~FL~~~r-r~~sLe~Lr~dLr~y~~~ 67 (757)
+|.||.+-+ +|.+--|||.||+.|-..
T Consensus 8 ~D~fL~~~~~~~rt~aDlr~El~a~a~E 35 (86)
T PF05363_consen 8 ADAFLDSPRTRHRTYADLRRELDAYADE 35 (86)
T ss_dssp HHHHHHT-SSS---HHHHHHHHHHT---
T ss_pred HHHHHhCCCCCchhHHHHHHHHHHHhHH
Confidence 789998666 999999999999987653
No 63
>PRK03918 chromosome segregation protein; Provisional
Probab=28.78 E-value=6.6e+02 Score=31.34 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=23.9
Q ss_pred HHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhH
Q 004390 81 ADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGS 121 (757)
Q Consensus 81 ~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~ 121 (757)
.++-.+-..+......+..+..-+..++.++...+..++..
T Consensus 659 ~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 659 EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666666666666665555555544
No 64
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=28.54 E-value=4.6e+02 Score=25.03 Aligned_cols=13 Identities=8% Similarity=0.368 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHh
Q 004390 147 DTFHVVSKVEKLI 159 (757)
Q Consensus 147 ~~~~~v~klE~ll 159 (757)
++..++++|..+|
T Consensus 105 ~~v~~ie~LN~~L 117 (131)
T PF10158_consen 105 QTVPSIETLNEIL 117 (131)
T ss_pred HHHHHHHHHHhhC
Confidence 4566666666666
No 65
>PLN02401 diacylglycerol o-acyltransferase
Probab=28.33 E-value=26 Score=40.05 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.8
Q ss_pred hhchhHHHHHhhhccchhHHHH
Q 004390 402 RAEAIYVEFMKQWNVGVYFSLR 423 (757)
Q Consensus 402 R~~~~y~~f~~rWnLpVYFqlR 423 (757)
=++.++.+|.++||.|||-=+.
T Consensus 323 WNs~s~~eywR~WN~PVH~fL~ 344 (446)
T PLN02401 323 WNAKTVEEYWRMWNMPVHKWMV 344 (446)
T ss_pred hccCcHHHHHHHcchHHHHHHH
Confidence 3577888999999999986554
No 66
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=28.09 E-value=7.1e+02 Score=31.52 Aligned_cols=105 Identities=16% Similarity=0.262 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 004390 57 LRSELQAHLSSLNH--ELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSE 134 (757)
Q Consensus 57 Lr~dLr~y~~~L~~--eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~ 134 (757)
||++++.|...+++ +..+.+-.+|++ +-+.|.-.++.+..+...+...+.++..+-.+..+.-++..+....|+.
T Consensus 395 ir~ei~~l~~~i~~~ke~e~~lq~e~~~---~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~ 471 (1200)
T KOG0964|consen 395 IRSEIEKLKRGINDTKEQENILQKEIED---LESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKE 471 (1200)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777754 344455555544 5566777778888888888888888888888888888888877777755
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 004390 135 -AASAREVLELLLDTFHVVSKVEKLIKELPS 164 (757)
Q Consensus 135 -l~~~k~~L~lll~~~~~v~klE~ll~~l~~ 164 (757)
.++.+++-..+-.+-+-|++=++.|...+.
T Consensus 472 lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~ 502 (1200)
T KOG0964|consen 472 LWREEKKLRSLIANLEEDLSRAEKNLRATMN 502 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455565555544455556677777765443
No 67
>cd07356 HN_L-whirlin_R1_like First harmonin_N_like domain (repeat 1) of the long isoform of whirlin, and related domains. This subgroup contains the first of two harmonin_N_like domains of the long isoform of whirlin, and related domains. Whirlin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds various components of the Usher protein network of the inner ear and the retina: erythrocyte protein p55, usherin, VlGR1, and myosin XVa. The long isoform of whirlin contains two harmonin_N_like domains, and three PDZ protein-binding domains, PDZ1-3. This first harmonin_N_like domain precedes PDZ1, and is a putative protein-binding module based on its sequence similarity to the N-terminal domain of harmonin. This first harmonin_N_like domain has been assayed for interaction with the cytoplasmic domain of cadherin 23 (a component of the Usher network and an interacting partner of the harmonin N-domain), however no interaction could be detected. Th
Probab=28.07 E-value=2e+02 Score=24.74 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=31.8
Q ss_pred hhcChHHHHHHHHHHHHhcchhhHHHHHHHHh-------hHHHHhhhcCC
Q 004390 255 EHQNANVIYNCLRAYAAIDNTRNAEEIFCNTV-------VAPLMQKIIPH 297 (757)
Q Consensus 255 ~~~~~~~l~~~Lr~Y~~l~~~~~ae~~~r~~v-------V~P~l~~ii~~ 297 (757)
.+..++...+||..|..=-.+.+.+.-++..+ +-|++.++|+.
T Consensus 17 s~~Er~~f~h~Ln~Y~~~RnV~~Lv~sL~~vLd~P~KrqllplLr~vIP~ 66 (78)
T cd07356 17 SEAEREEFIHCLNDYHAKRNVYDLVQSLKVVLDTPEKRQLLPLLRLVIPR 66 (78)
T ss_pred cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCHhHhHHHHHHHHHccc
Confidence 33456788899999988777777666666655 56888888864
No 68
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=27.41 E-value=1.9e+02 Score=22.52 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004390 102 APLLELREKIDGFRGALEGSLVALQNGLKQRSEAASARE 140 (757)
Q Consensus 102 ~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~ 140 (757)
.....|+.+|...|..+...+++|...+.-+.-+...+.
T Consensus 3 ~~~~~ie~dIe~tR~~La~tvd~L~~r~~P~~~a~~~~~ 41 (49)
T PF12277_consen 3 RSPDEIERDIERTRAELAETVDELAARLSPKRLADEAKE 41 (49)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 456789999999999999999999988876655554443
No 69
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=26.82 E-value=4.6e+02 Score=27.89 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHh-hCCCHHHHH-H--HhhchhHHHHHhhh----ccchhHH
Q 004390 353 EVLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEG-YCPSRSAVA-K--FRAEAIYVEFMKQW----NVGVYFS 421 (757)
Q Consensus 353 ev~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~-~c~S~~~v~-~--lR~~~~y~~f~~rW----nLpVYFq 421 (757)
-|..++......-|+++.|.+.+.-|..+--||..|-. ...+.++.+ + --..+.|+....|| ++|.++.
T Consensus 145 sI~k~V~nfv~~kf~~l~~~E~q~m~elakmFL~~lN~W~le~ps~~~~~~~~~d~~~YkinYtRWl~fC~vP~~c~ 221 (252)
T PF06466_consen 145 SIEKAVTNFVLYKFSHLPQKEWQTMYELAKMFLHCLNHWKLEAPSQRRQRSNAEDQSAYKINYTRWLCFCHVPAFCD 221 (252)
T ss_pred cHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHhhccCCChHHHHhhcCcchHHHHHHHHHHHHhhcccccccc
Confidence 34455555555568999999999999999999998866 344443332 1 13567889999999 6666553
No 70
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=26.42 E-value=1e+03 Score=27.16 Aligned_cols=17 Identities=35% Similarity=0.296 Sum_probs=10.5
Q ss_pred HHHHHHHhhHHHHhhhc
Q 004390 279 EEIFCNTVVAPLMQKII 295 (757)
Q Consensus 279 e~~~r~~vV~P~l~~ii 295 (757)
.++.|+.-++-.+++++
T Consensus 353 ~Ev~RRr~~~~k~~~i~ 369 (412)
T PF04108_consen 353 LEVERRRAVRDKMKKII 369 (412)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45666666666666655
No 71
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.00 E-value=81 Score=29.87 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=14.1
Q ss_pred cCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHh
Q 004390 88 TKLVDVDAAVVRMRAPLLELREKIDGFRGALEG 120 (757)
Q Consensus 88 s~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~ 120 (757)
..|.++|..+++...=-..++++|.++++.+..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444444444444444444444444444443
No 72
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.84 E-value=6.8e+02 Score=25.02 Aligned_cols=70 Identities=17% Similarity=0.261 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHH-hhchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 004390 57 LRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVV-RMRAPLLELREKIDGFRGALEGSLVALQNG 128 (757)
Q Consensus 57 Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~-~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~ 128 (757)
|..-+..+...+...+ ..|++-+.++=+=+...++. +.+. ++...+...++.+....+.+.+....+.+.
T Consensus 62 ll~~~~~~~~~~~~~l-~~~~~~~~~vd~~~~a~i~e-~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdi 132 (204)
T PF04740_consen 62 LLQGLILLLEEYQEAL-KFIKDFQSEVDSSSNAIIDE-DFLESELKKKLNQLKEQIEDLQDEINSILSSVSDI 132 (204)
T ss_pred HHHHHHHHHHHHHHHH-HhHHHHHHHHcccccccccH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 3444777778888888 88887777763224444443 4444 777778888888877777777777666555
No 73
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=25.73 E-value=32 Score=38.19 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=39.6
Q ss_pred HHHHHHhcCCccccCCCchHHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHhhh
Q 004390 354 VLSAIQKGKPGAFSPGRPTQFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQW 414 (757)
Q Consensus 354 v~~~l~~~l~~iFapG~Pd~F~~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~f~~rW 414 (757)
|.+++-..|..=|+-|.|- ++|---.+||+++|.+|..+ ++..|+-.| .||
T Consensus 56 VmeAlGS~ltNKYSEGyPG---~RYYGGne~ID~iE~LCq~R-ALeaF~ldp------~kW 106 (477)
T KOG2467|consen 56 VMEALGSCLTNKYSEGYPG---ARYYGGNEYIDQIELLCQKR-ALEAFGLDP------EKW 106 (477)
T ss_pred HHHHHhHHhhcccccCCCc---ccccCcchHHHHHHHHHHHH-HHHHhCCCH------HHC
Confidence 3445555566678888886 58999999999999999875 677777666 689
No 74
>PRK11637 AmiB activator; Provisional
Probab=25.09 E-value=6e+02 Score=28.95 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=16.9
Q ss_pred CCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHH
Q 004390 90 LVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVAL 125 (757)
Q Consensus 90 L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l 125 (757)
|...+..|..+..-+..+..++.....++.....++
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455444444444443333
No 75
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.72 E-value=7.8e+02 Score=28.80 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=15.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH
Q 004390 51 FVPFETLRSELQAHLSSLNHELI 73 (757)
Q Consensus 51 ~~sLe~Lr~dLr~y~~~L~~eLv 73 (757)
...|++.+.+|+.=++.++..+-
T Consensus 301 ~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 301 ITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777776666
No 76
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=23.92 E-value=4.2e+02 Score=26.91 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=27.5
Q ss_pred CCCCCCCChHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 004390 33 LFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDL 75 (757)
Q Consensus 33 ~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~~~L~~eLveL 75 (757)
.|-.-.|||....+-+.+-.++-+=+.++-.+.+.+..++.+-
T Consensus 80 ~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~ 122 (190)
T PF05266_consen 80 ELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK 122 (190)
T ss_pred HHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444678888777776665555555556666666666665555
No 77
>PHA00442 host recBCD nuclease inhibitor
Probab=23.89 E-value=1.2e+02 Score=24.27 Aligned_cols=39 Identities=28% Similarity=0.330 Sum_probs=28.7
Q ss_pred HHHHHHHHH----HHHHHHHHhcCCCCCCCccHHHHHHhcccccc
Q 004390 711 ICMQLFLDI----QEYGRSLAALGVQAADIPPYRSLWQCVAPSDR 751 (757)
Q Consensus 711 Ir~QL~LDv----~~f~~~~~~lgv~~~~~~~~~~L~~~V~~~~~ 751 (757)
=-+|.|+|- ..|.+.+++.| +++++.|.+..++|+...+
T Consensus 16 nd~q~yidsLek~~~~L~~Lea~G--VDNW~Gy~eA~emv~~edd 58 (59)
T PHA00442 16 NDMQGYIDSLEKDNEFLKALRACG--VDNWDGYMDAVEMVAEEDD 58 (59)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHcC--CcchhhHHHHHHHHhhhcc
Confidence 345666653 45777778888 5689999999999987643
No 78
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.87 E-value=4.8e+02 Score=22.61 Aligned_cols=34 Identities=15% Similarity=0.287 Sum_probs=16.2
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 004390 97 VVRMRAPLLELREKIDGFRGALEGSLVALQNGLK 130 (757)
Q Consensus 97 i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~ 130 (757)
+.+++.-+.++.+.+.....+++....++.+.++
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~ 54 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLH 54 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344444444455555555555555544444443
No 79
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=23.83 E-value=5.5e+02 Score=30.23 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=22.8
Q ss_pred HHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHH
Q 004390 83 FVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (757)
Q Consensus 83 Fv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~ 126 (757)
+..+...|......+...+.-|...+.++..++..++....+|.
T Consensus 276 ~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 276 SSELQSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555555555555555555555543
No 80
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.28 E-value=1.9e+02 Score=34.38 Aligned_cols=74 Identities=22% Similarity=0.199 Sum_probs=49.0
Q ss_pred HHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhcc
Q 004390 565 LVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGE 639 (757)
Q Consensus 565 ~~~~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~ 639 (757)
-+.+.|.+....|..++..++...++.+-..-.+..+++-+|-.+.|-|. ..-+..-+=...+|+||-.|+++.
T Consensus 876 ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvkgt~-~a~~sva~dad~vl~plmdlldgn 949 (1283)
T KOG1011|consen 876 EAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVKGTG-LAKTSVAQDADAVLEPLMDLLDGN 949 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhcccc-cchhhcccchHHHHHHHHHHHhch
Confidence 34555666666666777777777666665555555566666666666654 234445556689999999999875
No 81
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.10 E-value=4.5e+02 Score=26.31 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=3.9
Q ss_pred hhhHHHHHhhh
Q 004390 77 NRDYADFVNLS 87 (757)
Q Consensus 77 N~DY~dFv~Ls 87 (757)
|+-++.+-.+.
T Consensus 109 ~~~~~~~~~~~ 119 (204)
T PF04740_consen 109 NQLKEQIEDLQ 119 (204)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 82
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=22.99 E-value=6.6e+02 Score=23.85 Aligned_cols=34 Identities=9% Similarity=0.238 Sum_probs=19.4
Q ss_pred CcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHH
Q 004390 91 VDVDAAVVRMRAPLLELREKIDGFRGALEGSLVA 124 (757)
Q Consensus 91 ~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~ 124 (757)
..++.+|..-+.-|..++.+|+..+..+.+...+
T Consensus 74 ~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~ 107 (146)
T PRK07720 74 TNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIE 107 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666555555554443
No 83
>PRK06443 chorismate mutase; Validated
Probab=22.85 E-value=93 Score=31.12 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=23.6
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004390 50 TFVPFETLRSELQAHLSSLNHELIDLINRDYA 81 (757)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~ 81 (757)
++.+|++||+++.. +..+|++|+|+--+
T Consensus 3 ~~~dLeeLR~eID~----ID~eIL~LL~kRm~ 30 (177)
T PRK06443 3 HFIDMEDLRSEILE----NTMDIIELIEKRRE 30 (177)
T ss_pred ccccHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 46788998888876 99999999999754
No 84
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=22.77 E-value=7.3e+02 Score=24.32 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhHHHHHh----hhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHH
Q 004390 68 LNHELIDLINRDYADFVN----LSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (757)
Q Consensus 68 L~~eLveLIN~DY~dFv~----Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~ 126 (757)
..++-++-||+-|.+|=| +...+-|+.+.+..++.-|..+...|..+...++.+.+++.
T Consensus 41 ~dne~id~imer~~~ieNdlg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~N 103 (157)
T COG3352 41 IDNEVIDAIMERMTDIENDLGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFN 103 (157)
T ss_pred CChHHHHHHHHHHHHHHhhcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 346778889999988754 33466778888888888888888888877777776666654
No 85
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=22.66 E-value=4.6e+02 Score=30.13 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHhhhcCCC
Q 004390 51 FVPFETLRSELQAHLS-------SLNHELIDLINRDYADFVNLSTKLV 91 (757)
Q Consensus 51 ~~sLe~Lr~dLr~y~~-------~L~~eLveLIN~DY~dFv~Lss~L~ 91 (757)
+..+.+||.||...-+ ..+..|-.+-. --..|-+.|.+..
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~-ki~~~k~~s~~~~ 196 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIRE-KIKKVKSASTNAS 196 (424)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccc
Confidence 5667777777765333 33333333322 3455666665555
No 86
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.51 E-value=1.9e+03 Score=29.04 Aligned_cols=70 Identities=7% Similarity=-0.002 Sum_probs=33.4
Q ss_pred HHHhhhHHHHHhhhcCCC-----cHHHHHHhhchhH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004390 74 DLINRDYADFVNLSTKLV-----DVDAAVVRMRAPL-------LELREKIDGFRGALEGSLVALQNGLKQRSEAASAREV 141 (757)
Q Consensus 74 eLIN~DY~dFv~Lss~L~-----G~d~~i~~l~~pL-------~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~ 141 (757)
+-+++++.++..+...+. |+...|..+..-+ ..+..++......+.....++.+.=.+++.+...-..
T Consensus 944 ~~~~~~~~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~ 1023 (1311)
T TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665554 3344455444444 4444444444444444444444433334444444334
Q ss_pred HH
Q 004390 142 LE 143 (757)
Q Consensus 142 L~ 143 (757)
++
T Consensus 1024 ~~ 1025 (1311)
T TIGR00606 1024 RK 1025 (1311)
T ss_pred HH
Confidence 43
No 87
>COG3343 RpoE DNA-directed RNA polymerase, delta subunit [Transcription]
Probab=22.48 E-value=1.4e+02 Score=29.76 Aligned_cols=67 Identities=25% Similarity=0.329 Sum_probs=53.0
Q ss_pred hHHHHHhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHhhhcCCCcHHHHHHhhchhHHHHHHHHH
Q 004390 41 SESYISELR-TFVPFETLRSELQAHLSSLNHELIDLINRDYAD------FVNLSTKLVDVDAAVVRMRAPLLELREKID 112 (757)
Q Consensus 41 vd~FL~~~r-r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~d------Fv~Lss~L~G~d~~i~~l~~pL~~l~~~V~ 112 (757)
++..+...+ +..++.+|-++.+.|+..=+.++-+.|=.=|+| ||+||.+.=|+.. ..|+.++-+++.
T Consensus 19 vA~~ile~~~~~~~F~dii~EI~~~~~~s~~ei~~~i~~FYTdln~DgrFi~LGdn~WgLRs-----wy~~Deideei~ 92 (175)
T COG3343 19 VAHAILEEKKKPFNFSDIINEIQKLLGVSKEEIRSRIGQFYTDLNIDGRFISLGDNKWGLRS-----WYPLDEIDEEIQ 92 (175)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhccCCceeeccccccchhh-----ccchhHHHHHHh
Confidence 556666556 569999999999999999999999999999998 8999999988654 245555544443
No 88
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.35 E-value=1.2e+03 Score=26.71 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHH
Q 004390 102 APLLELREKIDGFRGALEGSLVALQNGLKQR-SEAASAREVLE 143 (757)
Q Consensus 102 ~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r-~~l~~~k~~L~ 143 (757)
--|+++|++.-+....++...+.+-+.|=+| .++...|..|+
T Consensus 179 ~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq 221 (552)
T KOG2129|consen 179 NTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQ 221 (552)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888887777766 67777777766
No 89
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=22.33 E-value=3.6e+02 Score=26.14 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhcchhhhhhccCCC--CCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 593 VEKAVEDLRQLKGITATYRMTNKP--LPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAA 670 (757)
Q Consensus 593 ~~~c~~~L~~v~~Ip~~YR~Tnk~--~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~v~ 670 (757)
.++|...|.-++ -++-+|. +|-..|-||++=|.-...|+-+.+.+-++.. -.++..+.|...+.
T Consensus 46 ~~~~~~aln~~~-----~~~eGk~~LVPLTsSlYVPGkl~d~~k~lVDIGTGYyVEK---------~~e~akdyfkRKve 111 (153)
T KOG3048|consen 46 YEESIAALNDVQ-----AANEGKKLLVPLTSSLYVPGKLSDNSKFLVDIGTGYYVEK---------DAEDAKDYFKRKVE 111 (153)
T ss_pred HHHHHHHHhhcc-----cCCCCCeEEEecccceeccceeccccceeEeccCceEEee---------chHHHHHHHHHHHH
Confidence 345666666322 2456777 8999999999999999999876544413321 12223333333333
Q ss_pred HHHHHHHHhHHHHHH
Q 004390 671 ELISVARKTESSLLK 685 (757)
Q Consensus 671 evL~sv~KtEeSL~R 685 (757)
=+-..+.+.|.-++.
T Consensus 112 ~l~kq~e~i~~i~~e 126 (153)
T KOG3048|consen 112 YLTKQIEQIEGILKE 126 (153)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455556666554
No 90
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=22.31 E-value=5.5e+02 Score=24.47 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=25.4
Q ss_pred HHHHHHHhhh--HHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHHHHHHHhHHHHHH
Q 004390 70 HELIDLINRD--YADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGFRGALEGSLVALQ 126 (757)
Q Consensus 70 ~eLveLIN~D--Y~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~ 126 (757)
++|-+|+|++ +.+||.--..+..+...+..+......+-+...+....++....++.
T Consensus 7 ~eL~~Ll~d~~~l~~~v~~l~~~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~ 65 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFVKSLPQVQELQQEREELLAENEELAEQNLSLEPELEELRSQLQ 65 (150)
T ss_dssp HHHHHHHHH-HHHHHHGGGGS--HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 4666677654 45566655555555555555554444444444333344443333333
No 91
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=21.78 E-value=3.4e+02 Score=23.61 Aligned_cols=16 Identities=25% Similarity=0.679 Sum_probs=8.8
Q ss_pred HHHHHHHhhhHHHHHh
Q 004390 70 HELIDLINRDYADFVN 85 (757)
Q Consensus 70 ~eLveLIN~DY~dFv~ 85 (757)
+||+|-|..+|.....
T Consensus 3 ~elLd~ir~Ef~~~~~ 18 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQ 18 (79)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666665555444
No 92
>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents a domain present at the N terminus in proteins which undergo autophosphorylation. The group includes, the gliding motility regulatory protein from Myxococcus xanthus and a number of bacterial chemotaxis proteins.; GO: 0004871 signal transducer activity, 0000160 two-component signal transduction system (phosphorelay); PDB: 3KYJ_A 3KYI_A 3IQT_A 1Y6D_A 2LD6_A 1TQG_A 2R25_A 1OXB_A 1QSP_B 1C03_B ....
Probab=21.54 E-value=2.8e+02 Score=23.13 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHH
Q 004390 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAV 97 (757)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i 97 (757)
++....+...+...|++.+..+-+.||.++..+.-.|+|.-..+
T Consensus 3 l~~f~~~~~~~~~~l~~~~~~~~~~d~~~l~~~~H~lkG~a~~~ 46 (90)
T PF01627_consen 3 LDIFLEEAPEDLEQLEQALQALEQEDWEELRRLAHRLKGSAGNL 46 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHhhhHHhc
Confidence 35567788888888888886656999999999999999876543
No 93
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=21.42 E-value=9.1e+02 Score=24.89 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=15.2
Q ss_pred HHHHHHHHHHH-HHhhhHHHHHhhh
Q 004390 64 HLSSLNHELID-LINRDYADFVNLS 87 (757)
Q Consensus 64 y~~~L~~eLve-LIN~DY~dFv~Ls 87 (757)
-+..+-.|||| |||+|-+..+.-|
T Consensus 19 DlE~i~kelie~l~~~~~qk~l~~g 43 (272)
T KOG4552|consen 19 DLEHIVKELIETLINRDKQKMLKNG 43 (272)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 34456667776 6788877665544
No 94
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.40 E-value=8.3e+02 Score=24.44 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 004390 124 ALQNGLKQRSE 134 (757)
Q Consensus 124 ~l~~~L~~r~~ 134 (757)
.++..|+.|.+
T Consensus 101 s~k~~lk~R~~ 111 (185)
T cd07628 101 SLKNLIKLRDQ 111 (185)
T ss_pred HHHHHHHHHHH
Confidence 34444544433
No 95
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.39 E-value=1.2e+03 Score=26.44 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHH----HHHHHHHHHHHHhHH
Q 004390 50 TFVPFETLRSELQ---AHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLEL----REKIDGFRGALEGSL 122 (757)
Q Consensus 50 r~~sLe~Lr~dLr---~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l----~~~V~~~r~~v~~~~ 122 (757)
....|..+..||+ .-...|..++-.|=++=..|+=-+...|....-+..+|-.-|..+ +.||...|.++..
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~-- 287 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELAS-- 287 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 4455666655554 445556666666655544466667777776665555555444433 3356655555553
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 123 VALQNGLKQRSEAASAREVLELLLDTFHVVSKVE 156 (757)
Q Consensus 123 ~~l~~~L~~r~~l~~~k~~L~lll~~~~~v~klE 156 (757)
+++++..+. =...|.+-+.|=.+-.+|+|||
T Consensus 288 --~EEK~~Yqs-~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 288 --MEEKMAYQS-YERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred --HHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHH
Confidence 344443331 1234555566556788889999
No 96
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.37 E-value=9.4e+02 Score=25.07 Aligned_cols=27 Identities=11% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHhccCCCChH----HHHHHHHHHHHHHHH
Q 004390 44 YISELRTFVPFE----TLRSELQAHLSSLNH 70 (757)
Q Consensus 44 FL~~~rr~~sLe----~Lr~dLr~y~~~L~~ 70 (757)
|-...+|+..|| .|++|++.|+.+++.
T Consensus 13 fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~ 43 (225)
T cd07590 13 LEREVQKLQQLESTTKKLYKDMKKYIEAVLA 43 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666 589999999999884
No 97
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.03 E-value=4.1e+02 Score=24.43 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=34.1
Q ss_pred HHhhhcCCCcHHHHHHhhchhHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 83 FVNLSTKLVDVDAAVVRMRAPLLELREKI-DGFRGALEGSLVALQNGLKQRSEAASAREVLELL 145 (757)
Q Consensus 83 Fv~Lss~L~G~d~~i~~l~~pL~~l~~~V-~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~ll 145 (757)
|-.=|.+++++|.+|++ .+.-+|..+ -++|++++-....|.+..++-+.++..-.+|+-+
T Consensus 36 ~ha~~~~VvaIDNKIeQ---AMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 36 AHASSGSVVAIDNKIEQ---AMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred ccCCCCceEeechHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33668889999876653 222223322 2355555555555555444446677777777653
No 98
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=20.10 E-value=5.3e+02 Score=27.43 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=65.0
Q ss_pred HHHHhcchhhHHHHHHHHhhHHHHhhhcCCCCcccccCCCcchHHHH-HHHHHHHHHhhhhHHHHhhhhccCCCcccccc
Q 004390 268 AYAAIDNTRNAEEIFCNTVVAPLMQKIIPHGPSEALAGASGDELESD-YEQIKQCVEKDCKFLLDISSAENSGLHVFDFL 346 (757)
Q Consensus 268 ~Y~~l~~~~~ae~~~r~~vV~P~l~~ii~~~~l~~~~~~~~~~L~~~-y~~il~fv~~~~~~ll~it~~~~s~~~~~dfl 346 (757)
+|..+|...+||+++-+.+++ +... ..... ++-..=|..+ .|.+++++.+.- ... ..|
T Consensus 14 a~r~lg~~~dAEDvvQE~flk-~~~~--~~~~~----~~~~awL~~Ia~n~~ld~lR~~~--------~~~---~~~--- 72 (281)
T TIGR02957 14 AYRMLGSVADAEDIVQETFLR-WQEA--DRAQI----ENPKAYLTKVVTRRCIDVLRSAR--------ARR---EVY--- 72 (281)
T ss_pred HHHHhCCHhHHHHHHHHHHHH-HHhC--Ccccc----cCHHHHHHHHHHHHHHHHHHHhh--------hcc---ccc---
Confidence 578899999999999999999 6653 11111 1111222222 455565553311 000 001
Q ss_pred ccccHHHHHHHHHhcCCccccCCCch-HHHHHHHHHHHHHHHHHhhCCCHHHHHHHhhchhHHHHHhhhccchhHHHHHH
Q 004390 347 ANSILKEVLSAIQKGKPGAFSPGRPT-QFLRNYKSSLDFLAYLEGYCPSRSAVAKFRAEAIYVEFMKQWNVGVYFSLRFQ 425 (757)
Q Consensus 347 ~nsvw~ev~~~l~~~l~~iFapG~Pd-~F~~nY~~t~~Fl~~lE~~c~S~~~v~~lR~~~~y~~f~~rWnLpVYFqlRfq 425 (757)
....+++ ... -....|. .....-.....+...|+.+-+-+..+-.|| .||.+-++
T Consensus 73 ~~~~~~e-------~~~--~~~~~~~~~~~~~e~~~~~l~~~l~~L~~~~R~v~~L~---------------~~~g~s~~ 128 (281)
T TIGR02957 73 VGPWLPE-------PLL--TTSADPAESVELAESLSMAYLLLLERLSPLERAVFVLR---------------EVFDYPYE 128 (281)
T ss_pred CCCCCCc-------ccC--CCCCChHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHH---------------HHcCCCHH
Confidence 0111111 111 0112333 233333445567778888888877776665 46788899
Q ss_pred HHHHhHH
Q 004390 426 EIAGALD 432 (757)
Q Consensus 426 EIa~~lE 432 (757)
|||..+.
T Consensus 129 EIA~~lg 135 (281)
T TIGR02957 129 EIASIVG 135 (281)
T ss_pred HHHHHHC
Confidence 9998776
Done!