Query 004390
Match_columns 757
No_of_seqs 167 out of 233
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jqq_A Conserved oligomeric go 96.5 0.095 3.3E-06 50.6 16.3 169 55-255 3-185 (204)
2 2a2f_X Exocyst complex compone 96.5 0.66 2.3E-05 49.4 24.8 121 593-747 190-314 (325)
3 3n1e_A Vacuolar protein sortin 92.9 2.7 9.3E-05 39.1 14.6 123 577-743 17-140 (141)
4 3swh_A MUNC13-1, protein UNC-1 83.3 10 0.00035 40.5 12.9 178 459-662 63-245 (341)
5 2fji_1 Exocyst complex compone 78.1 80 0.0027 34.0 18.9 160 526-731 136-295 (399)
6 1vyk_A Oxygen-evolving enhance 64.5 75 0.0026 29.6 11.8 63 26-114 30-92 (149)
7 3ghg_A Fibrinogen alpha chain; 52.7 1.5E+02 0.0052 33.0 13.4 37 49-86 50-86 (562)
8 3t98_B Nucleoporin NUP58/NUP45 51.2 14 0.00048 31.8 4.0 41 71-111 48-88 (93)
9 3ls0_A SLL1638 protein, PSBQ; 28.8 3.3E+02 0.011 24.8 9.6 33 70-114 40-73 (133)
10 2ocy_A RAB guanine nucleotide 28.0 2.9E+02 0.01 25.8 9.3 12 67-78 3-14 (154)
11 3v86_A De novo design helix; c 27.3 1.1E+02 0.0039 19.3 4.2 21 106-126 4-24 (27)
12 3s84_A Apolipoprotein A-IV; fo 26.0 5.3E+02 0.018 26.1 17.1 18 55-72 14-31 (273)
13 1deq_A Fibrinogen (alpha chain 22.2 4.1E+02 0.014 28.4 10.2 45 49-93 53-100 (390)
14 1jcd_A Major outer membrane li 22.1 97 0.0033 23.6 3.9 17 103-119 12-28 (52)
15 2eqb_B RAB guanine nucleotide 21.2 4E+02 0.014 22.9 8.2 47 97-143 7-53 (97)
16 3r2p_A Apolipoprotein A-I; amp 20.6 3.7E+02 0.012 25.5 9.0 79 54-132 91-178 (185)
No 1
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.095 Score=50.63 Aligned_cols=169 Identities=15% Similarity=0.239 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHH-H---HHHhhchhHHHHHHHHHHH-HHHHHhHHHHHHHHH
Q 004390 55 ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVD-A---AVVRMRAPLLELREKIDGF-RGALEGSLVALQNGL 129 (757)
Q Consensus 55 e~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d-~---~i~~l~~pL~~l~~~V~~~-r~~v~~~~~~l~~~L 129 (757)
++|..||...++.+.+.|++=||.+|.|+.+++.--.|-+ + .+.+++..|.+|..++... ..++....+-+.+.+
T Consensus 3 D~L~~dls~Lsq~m~~~LLe~i~~~YddY~~fC~~f~~~n~E~l~eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l 82 (204)
T 2jqq_A 3 DSLIRDLSGLSQKMVQTLLEQIRSNYDDYLTFSNTYTDEENETLINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVL 82 (204)
T ss_dssp ------------------------------------------------CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 6789999999999999999999999999999999998842 3 3444555666666666553 333444444455555
Q ss_pred HHHHHHHHHHHHH------HHHHHHHHHHH-HHHHHhhhCCCCCCCCCCccchhhhhhccCCCCCCCCccCCccccchhh
Q 004390 130 KQRSEAASAREVL------ELLLDTFHVVS-KVEKLIKELPSLPADGSDFDVNLEERKSMSSATTFQPVENGTNVRETQS 202 (757)
Q Consensus 130 ~~r~~l~~~k~~L------~lll~~~~~v~-klE~ll~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (757)
+--+++.+-..+| .-++.+...++ .|+.+-+.- |= |+. . -.
T Consensus 83 ~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~---pl----------d~e----------------L---c~ 130 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIE---PL----------EEE----------------I---CS 130 (204)
T ss_dssp HHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSS---CC----------CHH----------------H---HH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCC---CC----------cHH----------------H---HH
Confidence 4444444444322 11122222221 133332110 00 000 0 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhc--CCcchHhHHHHHHHHHHHHHHHHhHHHHHhhh
Q 004390 203 MLLERIASEMNRLKFYIAHAQ--NLPFIENMEKRIKSASLLLDASLGHCFVHGLE 255 (757)
Q Consensus 203 ~~LeR~a~e~~~L~~~~~~~~--~~pfv~~~~~Ri~~i~~~L~~~L~~~l~~~~~ 255 (757)
.+..++..-+...+....... +.|++..|+.-...+-.+++..|.-+...+++
T Consensus 131 ~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~RN~yq~i~q~Fqi~lk~LtdkClE 185 (204)
T 2jqq_A 131 GLIEQLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQISLKILTEKCLE 185 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234444444555555555544 57999999888888888888888666655655
No 2
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=96.51 E-value=0.66 Score=49.43 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 593 VEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAEL 672 (757)
Q Consensus 593 ~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~v~ev 672 (757)
.+.+...+...- -..-|=|+-.++|++||.|+..++.=|+.-... -. .||.++++.+..+++++++.+..+.
T Consensus 190 ~~~v~~KIDdfl-~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~--~LP~~v~~~~~~~a~~his~~l~~~---- 261 (325)
T 2a2f_X 190 GLRICSKIDEFF-ELSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FA--FKLPHIAQAACRRTFEHIAEKIYSI---- 261 (325)
T ss_dssp HHHHHHHHHHHH-TTCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TT--TTSHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHH-HhcccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HH--cCCHHHHHHHHHHHHHHHHHHHHHH----
Confidence 333333444433 235578998999999999999999999987763 33 7999999999999999999999884
Q ss_pred HHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCCC----CCCccHHHHHHhcc
Q 004390 673 ISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGVQA----ADIPPYRSLWQCVA 747 (757)
Q Consensus 673 L~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv~~----~~~~~~~~L~~~V~ 747 (757)
|. .+..||+ .. + + =.|+-+||.++..-+.+.+++. .=...|.+|.++|.
T Consensus 262 Ll-----~~~vk~i---n~---~--------a-------v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~ 314 (325)
T 2a2f_X 262 MY-----DEDVKQI---ST---G--------A-------LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLD 314 (325)
T ss_dssp HT-----C---------CC---T--------T-------HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHH
T ss_pred hc-----Ccchhhc---CH---H--------H-------HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHH
Confidence 42 2333332 11 1 1 2589999999999998866542 22367888888763
No 3
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=92.88 E-value=2.7 Score=39.09 Aligned_cols=123 Identities=18% Similarity=0.264 Sum_probs=80.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHH
Q 004390 577 LSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLD 656 (757)
Q Consensus 577 l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~ 656 (757)
.+.+...|.+.+|+++.++...+|+ -|-.| +| -||+|..++.+-+.++.+.-.. .||++..+.++..
T Consensus 17 y~eH~~eI~~KLv~Im~~r~~~~l~---------~Wd~k-~p-vpS~~m~tl~Ke~~kLH~~Ls~--~LP~~~v~~Im~~ 83 (141)
T 3n1e_A 17 YHDHIAEISAKLVAIMDSLFDKLLS---------KYEVK-AP-VPSPCFRNICKQMTKMHEAIFD--LLPEEQTQMLFLR 83 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---------TCCCC-SS-SSCHHHHHHHHHHHHHHHHHTT--TSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------HhccC-CC-CCCHHHHHHHHHHHHHHHHHHh--hCCHHHHHHHHHH
Confidence 4456666667788888888777665 26665 33 7999999999999999987654 8998877666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc-CCCCCC
Q 004390 657 AATQITSRYHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL-GVQAAD 735 (757)
Q Consensus 657 v~~~v~~~Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~l-gv~~~~ 735 (757)
| ...|... .-+.+.++- - -+|..+-+-=+.-||++|...+++| |+.-.+
T Consensus 84 V----f~~fk~~----------l~~~~~~~~--------i--------~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d~~ 133 (141)
T 3n1e_A 84 I----NASYKLH----------LKKQLSHLN--------V--------INDGGPQNGLVTADVAFYTGNLQALKGLKDLD 133 (141)
T ss_dssp H----HHHHHHH----------HHHHHHHTT--------C--------CSSSSHHHHHHHHHHHHHHHHHHTSTTCTTCC
T ss_pred H----HHHHHHH----------HHHHHHHcC--------C--------CCCCcccchHHHHHHHHHHHHhcccCCCCccc
Confidence 4 5666653 223344321 0 1123333323678999999999999 554433
Q ss_pred CccHHHHH
Q 004390 736 IPPYRSLW 743 (757)
Q Consensus 736 ~~~~~~L~ 743 (757)
+. +..+|
T Consensus 134 l~-~~~iw 140 (141)
T 3n1e_A 134 LN-MAEIW 140 (141)
T ss_dssp CC-GGGGG
T ss_pred cc-HHhhc
Confidence 33 44444
No 4
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=83.34 E-value=10 Score=40.50 Aligned_cols=178 Identities=12% Similarity=0.135 Sum_probs=88.9
Q ss_pred hhHHHHHHHHhhhcccCccccccchHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCCcccccCChhhHHHHHHhHHH
Q 004390 459 KQSVTLLDSMKSCWRQDVFLLPCSDKFLRLSLQLLSRYSNWLSSGLAARSSGHASFNPGNEWAISAAPDDFIYIIHDINC 538 (757)
Q Consensus 459 ~~s~~l~~~l~~cWs~~Vfl~~L~~rFwkLtLQllsRy~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Di~~ 538 (757)
.+....|..| =|.|..-...+.-||-+-....+..|+.-+......... . ...+.+|.++.++..
T Consensus 63 ~Q~~~~~~~L--~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~-~------------e~~~~~Cv~lNNie~ 127 (341)
T 3swh_A 63 NQSFEIIKKL--ECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCS-K------------EKEKVPCILMNNTQQ 127 (341)
T ss_dssp HHHHHHHHHS--CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-T------------TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-h------------hcccchhhhcccHHH
Confidence 4445555554 477877777788888999999999999888766544221 0 012457888899888
Q ss_pred HHHHhhhhHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcchhhhhhccCCC--
Q 004390 539 LATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKGITATYRMTNKP-- 616 (757)
Q Consensus 539 L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~Ip~~YR~Tnk~-- 616 (757)
+...+...+.+.=. .+..+...+.+.+....|...+..+...+.+.+...-...++++. +..+|+....
T Consensus 128 lR~~L~~l~~~l~~-------~~l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~--~~l~~i~~~~~~ 198 (341)
T 3swh_A 128 LRVQLEKMFEAMGG-------KELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMG--DILSQVKGTGNV 198 (341)
T ss_dssp HHHHHHHHHHHTTT-------TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH--HHHHTCC-----
T ss_pred HHHHHHHHHHhcch-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhcccccC
Confidence 87766653322211 111112233334433444444333333222222222122222221 2233322110
Q ss_pred CCC-C--CCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHH
Q 004390 617 LPV-R--HSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQIT 662 (757)
Q Consensus 617 ~Pt-~--~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~ 662 (757)
.|. + .+.=+++++.||-.|++..-. .++....++....|+..+.
T Consensus 199 ~~~~~~~~~~~~~~ai~PLm~yLd~~L~--~l~~~L~~~~f~rvL~~lW 245 (341)
T 3swh_A 199 PASACSSVAQDADNVLQPIMDLLDSNLT--LFAKICEKTVLKRVLKELW 245 (341)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHH--HHHHHSCHHHHHHHHHHHH
T ss_pred CccccccccccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 111 1 134468999999999986533 3333333333444444443
No 5
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=78.06 E-value=80 Score=34.03 Aligned_cols=160 Identities=7% Similarity=0.020 Sum_probs=88.5
Q ss_pred hhhHHHHHHhHHHHHHHhhhhHHHHHHHhhccCChhhHHHHHHHHHhhhhhhhchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 004390 526 PDDFIYIIHDINCLATEVSGDYLTHVLQLLSSCSSEVLDLVKQSILEGGKSLSSMLPVVINTIVDALVEKAVEDLRQLKG 605 (757)
Q Consensus 526 ~~~~~~l~~Di~~L~~~i~~~~~~~i~~~l~~~~~~~~~~~~~~l~e~~~~l~~~~~~l~~~iv~~l~~~c~~~L~~v~~ 605 (757)
.+.+++++.|+....+.+.. +.+.+.+. +..+....+...+.+..+.+..+.......+++.+...+...++ .
T Consensus 136 ~e~liA~~Nn~~~~~e~~~~-l~~~~~~~---~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~---~ 208 (399)
T 2fji_1 136 VEYLIAVSNDQMKAADYAVA-ISSKYGKL---VSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQ---E 208 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHTT---SCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHT---T
T ss_pred HHhhhhhhccHHHHHHHHHH-HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 57799999999877665554 33333322 22222222223333333333333333333333333332222221 1
Q ss_pred hhhhhhccCCCCCCCCCcchHhhhHhHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 004390 606 ITATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGERAMTYLTPEAKNELLLDAATQITSRYHELAAELISVARKTESSLLK 685 (757)
Q Consensus 606 Ip~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~~~~~l~~~~~~~~~~~v~~~v~~~Y~~~v~evL~sv~KtEeSL~R 685 (757)
+ | |++=.- +.+|..|+.-+..|....+. ++.+...+.++..+...+..+|... |.+
T Consensus 209 l---f--t~~W~~---~~~v~~i~~ti~dy~~d~~~--~L~~~~~~~l~~~~~~~~v~~Yl~~--------------l~~ 264 (399)
T 2fji_1 209 I---F--SKTWYM---GSQAQQIADTLDEYLLDIKP--QMNSVLFVNFIDNVIGETIIKFLTA--------------LSF 264 (399)
T ss_dssp T---T--SGGGTT---CCHHHHHHHHHHHHHHHHGG--GSCHHHHHHHHHHHHHHHHHHHHHG--------------GGG
T ss_pred h---C--CchhcC---CcHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHH--------------Hhc
Confidence 1 1 111111 11899999999999988765 7999989899999999998888862 222
Q ss_pred HHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Q 004390 686 IRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAALGV 731 (757)
Q Consensus 686 LKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~lgv 731 (757)
|.+=+ + . ....-.||..|++.+.....+++-
T Consensus 265 -~~~~~------~------~--~~~~~~~l~~D~~~l~~~f~~~~~ 295 (399)
T 2fji_1 265 -EHSFK------N------K--NNKFLEAMKRDFEIFYQLFVKVLD 295 (399)
T ss_dssp -CCCCC------C------G--GGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCCC------c------h--hHHHHHHHHHHHHHHHHHHHHhcc
Confidence 10000 0 0 335566777788777777777764
No 6
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=64.53 E-value=75 Score=29.64 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=35.8
Q ss_pred CCccCcCCCCCCCCChHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHH
Q 004390 26 PLWFKSNLFLSPNFDSESYISELRTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLL 105 (757)
Q Consensus 26 ~l~F~~~~F~~~dFdvd~FL~~~rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~ 105 (757)
.|+.+|+.|.-+.-+|.+=+.-. +.+-+.| .+|=++|++++=.|| -+.||.|+.
T Consensus 30 ~l~~~k~~f~~~~l~~~~a~~rI-------------k~~a~~i-~~vk~lI~k~~W~~v------------rn~LR~~~~ 83 (149)
T 1vyk_A 30 TLPYTKDRFYLQPLPPTEAAQRA-------------KVSASEI-LNVKQFIDRKAWPSL------------QNDLRLRAS 83 (149)
T ss_dssp ----CTTCCEECCCCHHHHHHHH-------------HHHHHHH-HTTHHHHHTTCHHHH------------HHHHHHHHH
T ss_pred CccccccccccCCCCHHHHHHHH-------------HHHHHHH-HHHHHHhhhccHHHH------------HHHHHHhHH
Confidence 46666999988888888766542 2233333 223366777765554 356666666
Q ss_pred HHHHHHHHH
Q 004390 106 ELREKIDGF 114 (757)
Q Consensus 106 ~l~~~V~~~ 114 (757)
.++.++..+
T Consensus 84 ~Lr~Dl~~l 92 (149)
T 1vyk_A 84 YLRYDLKTV 92 (149)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665554
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=52.67 E-value=1.5e+02 Score=33.01 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=28.4
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh
Q 004390 49 RTFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNL 86 (757)
Q Consensus 49 rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~L 86 (757)
|-...|+.--.||....+.|++++-++ .++|.+--+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl-sKnsKdseqy 86 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSL 86 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHH
Confidence 344556777788999999999999998 8888884444
No 8
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=51.17 E-value=14 Score=31.82 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=33.1
Q ss_pred HHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHH
Q 004390 71 ELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKI 111 (757)
Q Consensus 71 eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V 111 (757)
+|...+.+=|+.||.|++.+-.+.+.|+.++.--..+|+.+
T Consensus 48 ~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 48 DLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998888888877776666655543
No 9
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=28.83 E-value=3.3e+02 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=21.1
Q ss_pred HH-HHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHH
Q 004390 70 HE-LIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGF 114 (757)
Q Consensus 70 ~e-LveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~ 114 (757)
.| |-.+||+.+=-|+. +-|+.||+++|.++..+
T Consensus 40 ~e~L~~lI~~~~W~~~R------------n~IhGPlg~lr~~m~~l 73 (133)
T 3ls0_A 40 EKRLQGLIADQNWVDTQ------------TYIHGPLGQLRRDMLGL 73 (133)
T ss_dssp HHTHHHHHHTTCHHHHH------------HHHHTTTTTHHHHHHHH
T ss_pred HHHHHHHhhhcchHHHH------------HHHhchHHHHHHHHHHH
Confidence 46 88899987655543 44555666666665543
No 10
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.03 E-value=2.9e+02 Score=25.76 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhh
Q 004390 67 SLNHELIDLINR 78 (757)
Q Consensus 67 ~L~~eLveLIN~ 78 (757)
.|+..||.-||+
T Consensus 3 sLStKLI~Ain~ 14 (154)
T 2ocy_A 3 ALSTQLIESVDK 14 (154)
T ss_dssp THHHHHHHHHHH
T ss_pred chHHHHHHHHHh
Confidence 467777777775
No 11
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=27.32 E-value=1.1e+02 Score=19.26 Aligned_cols=21 Identities=10% Similarity=0.396 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 004390 106 ELREKIDGFRGALEGSLVALQ 126 (757)
Q Consensus 106 ~l~~~V~~~r~~v~~~~~~l~ 126 (757)
+++.+|.+.++++....++++
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 456666666666665555543
No 12
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.01 E-value=5.3e+02 Score=26.14 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004390 55 ETLRSELQAHLSSLNHEL 72 (757)
Q Consensus 55 e~Lr~dLr~y~~~L~~eL 72 (757)
+.||..|..+...|+..|
T Consensus 14 e~lr~~l~~~~eel~~~L 31 (273)
T 3s84_A 14 EKLKEEIGKELEELRARL 31 (273)
T ss_dssp THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 345555555555555443
No 13
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.20 E-value=4.1e+02 Score=28.41 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=26.8
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHhhhcCCCcH
Q 004390 49 RTFVPFETLRSELQAHLSSLNHELIDLINRD---YADFVNLSTKLVDV 93 (757)
Q Consensus 49 rr~~sLe~Lr~dLr~y~~~L~~eLveLIN~D---Y~dFv~Lss~L~G~ 93 (757)
|=.-.|+.--++++.....|+++|-++.... |.-+.++..-|++-
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~ 100 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGD 100 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3445566666778888888888887776443 33334444444443
No 14
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=22.07 E-value=97 Score=23.64 Aligned_cols=17 Identities=12% Similarity=-0.019 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 004390 103 PLLELREKIDGFRGALE 119 (757)
Q Consensus 103 pL~~l~~~V~~~r~~v~ 119 (757)
.+..|-.+|..+...+.
T Consensus 12 ~V~~L~~kVdqLssdV~ 28 (52)
T 1jcd_A 12 DAQTANAKADQASNDAN 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 15
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.20 E-value=4e+02 Score=22.92 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=29.0
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004390 97 VVRMRAPLLELREKIDGFRGALEGSLVALQNGLKQRSEAASAREVLE 143 (757)
Q Consensus 97 i~~l~~pL~~l~~~V~~~r~~v~~~~~~l~~~L~~r~~l~~~k~~L~ 143 (757)
++.++.-+.++..++..+..++.....++..--..|..+...+.-++
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie 53 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLN 53 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666677777777777666666655555665555555444
No 16
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=20.58 E-value=3.7e+02 Score=25.46 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCC-cHHHHHHhhchhH--------HHHHHHHHHHHHHHHhHHHH
Q 004390 54 FETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLV-DVDAAVVRMRAPL--------LELREKIDGFRGALEGSLVA 124 (757)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~-G~d~~i~~l~~pL--------~~l~~~V~~~r~~v~~~~~~ 124 (757)
+|++|..|.-|...++.-+-+-+-+=-+..--+...|+ ++...++.++.-| ..++..|.++|..+.--.++
T Consensus 91 lee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee 170 (185)
T 3r2p_A 91 LEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDE 170 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HHHHHHHH
Q 004390 125 LQNGLKQR 132 (757)
Q Consensus 125 l~~~L~~r 132 (757)
++++|.++
T Consensus 171 ~k~kl~~~ 178 (185)
T 3r2p_A 171 LRQRLAAR 178 (185)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Done!