Query 004390
Match_columns 757
No_of_seqs 167 out of 233
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 23:43:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004390.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004390hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nzea_ a.24.18.1 (A:) Oxygen- 24.1 1.7E+02 0.012 23.6 11.1 47 55-114 9-55 (112)
2 d1s0pa_ a.192.1.1 (A:) N-termi 22.0 38 0.0028 30.2 4.4 20 73-92 6-25 (176)
3 d1lvfa_ a.47.2.1 (A:) Syntaxin 21.6 98 0.0071 24.8 6.7 58 665-729 4-61 (106)
4 d1nvpb_ a.32.1.1 (B:) Large ch 20.3 76 0.0055 21.5 4.6 29 661-689 2-37 (43)
5 d1gzsb_ a.168.1.1 (B:) GEF dom 18.4 30 0.0022 29.7 2.6 32 399-430 111-159 (165)
6 d2a0ba_ a.24.10.1 (A:) Aerobic 18.2 1.8E+02 0.013 22.8 8.0 51 45-95 12-66 (118)
7 d1gs9a_ a.24.1.1 (A:) Apolipop 17.8 1.8E+02 0.013 24.1 8.1 22 54-75 43-64 (144)
8 d1o5ha_ a.191.1.1 (A:) Hypothe 17.3 1.8E+02 0.013 26.0 8.2 43 50-92 50-92 (200)
9 d1lvfa_ a.47.2.1 (A:) Syntaxin 16.9 1.4E+02 0.01 23.8 6.7 18 55-72 41-58 (106)
10 d1is1a_ d.67.3.1 (A:) Ribosome 16.0 3.3E+02 0.024 23.6 9.8 108 599-728 50-173 (185)
No 1
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=24.06 E-value=1.7e+02 Score=23.55 Aligned_cols=47 Identities=13% Similarity=0.091 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCcHHHHHHhhchhHHHHHHHHHHH
Q 004390 55 ETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIDGF 114 (757)
Q Consensus 55 e~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G~d~~i~~l~~pL~~l~~~V~~~ 114 (757)
++-..-.++.-+.| .+|-++|++++=.+| .+.||.|+..++.++..+
T Consensus 9 ~eaa~ri~~sa~~L-~~l~~lI~k~~W~~v------------~~~Lr~~~~~Lr~dl~~l 55 (112)
T d1nzea_ 9 TEAAQRAKVSASEI-LNVKQFIDRKAWPSL------------QNDLRLRASYLRYDLKTV 55 (112)
T ss_dssp TTHHHHHHHHHHHH-HTTHHHHHTTCHHHH------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhccHHHH------------HHHHHHHHHHHHHHHHHH
Confidence 33344455555666 677778887776554 355666666666655544
No 2
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=21.96 E-value=38 Score=30.24 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=17.6
Q ss_pred HHHHhhhHHHHHhhhcCCCc
Q 004390 73 IDLINRDYADFVNLSTKLVD 92 (757)
Q Consensus 73 veLIN~DY~dFv~Lss~L~G 92 (757)
=++||.....|+.||..|-|
T Consensus 6 D~~i~~~v~~~~~~s~~Igg 25 (176)
T d1s0pa_ 6 QNLVDQHITPFVALSKKLAP 25 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHhCH
Confidence 36899999999999999954
No 3
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.61 E-value=98 Score=24.78 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 004390 665 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQLFLDIQEYGRSLAAL 729 (757)
Q Consensus 665 Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~QL~LDv~~f~~~~~~l 729 (757)
|+....||..++.+++.-+++..+.+.. ++ +++ ...-+-.+.+|.-.+.....+++.|
T Consensus 4 F~~v~~EVq~s~~~~~~l~~~w~~~~~~--~~-~~~----~~e~~~~~~eL~~~l~siewdL~dL 61 (106)
T d1lvfa_ 4 FFVVKGEVQKAVNTAQGLFQRWTELLQG--PS-AAT----REEIDWTTNELRNNLRSIEWDLEDL 61 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC--TT-SCC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC-CCC----cHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 7888999999999999999998877651 11 100 0122346777766666555554433
No 4
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.34 E-value=76 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHh-------HHHHHHHHhc
Q 004390 661 ITSRYHELAAELISVARKT-------ESSLLKIRQG 689 (757)
Q Consensus 661 v~~~Y~~~v~evL~sv~Kt-------EeSL~RLKk~ 689 (757)
|.+-|...+.||+++||.- |..|+.||+.
T Consensus 2 V~kvY~~VIedVI~~vR~~F~~~GvDe~vL~eLk~~ 37 (43)
T d1nvpb_ 2 VPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTL 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4456777777777777642 4566666654
No 5
>d1gzsb_ a.168.1.1 (B:) GEF domain of SopE toxin {Salmonella typhimurium [TaxId: 90371]}
Probab=18.42 E-value=30 Score=29.67 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHhhchhHHHHH-----------------hhhccchhHHHHHHHHHHh
Q 004390 399 AKFRAEAIYVEFM-----------------KQWNVGVYFSLRFQEIAGA 430 (757)
Q Consensus 399 ~~lR~~~~y~~f~-----------------~rWnLpVYFqlRfqEIa~~ 430 (757)
.+|++++.|.+|+ .+|..|+=||++.+.|+..
T Consensus 111 h~~~n~~qq~~fk~YArq~~m~lVap~~~e~~~~tp~~F~~tve~i~~~ 159 (165)
T d1gzsb_ 111 RMFINQHQQASFKIYAEKIIMTEVAPLFNECAMPTPQQFQLILENIANK 159 (165)
T ss_dssp GGGSSHHHHHHHHHHHHHHHHHHHGGGGTTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHhhh
Confidence 4566666666665 6899999999999888754
No 6
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]}
Probab=18.15 E-value=1.8e+02 Score=22.80 Aligned_cols=51 Identities=12% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHhccCCCChHHHHHHHHHHHHHHHHHHHHH---H-hhhHHHHHhhhcCCCcHHH
Q 004390 45 ISELRTFVPFETLRSELQAHLSSLNHELIDL---I-NRDYADFVNLSTKLVDVDA 95 (757)
Q Consensus 45 L~~~rr~~sLe~Lr~dLr~y~~~L~~eLveL---I-N~DY~dFv~Lss~L~G~d~ 95 (757)
|.++.....-+.+..=|..|.+.+...+-+| + ++||..+-..+=.|+|.-.
T Consensus 12 L~~l~~~~g~~~~~~~l~~F~~~~~~~l~~l~~a~~~~d~~~~~~~aH~LKgsa~ 66 (118)
T d2a0ba_ 12 LEQYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAG 66 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3343433444444444445554444433332 2 4788888888888887654
No 7
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4 [TaxId: 9606]}
Probab=17.77 E-value=1.8e+02 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=14.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004390 54 FETLRSELQAHLSSLNHELIDL 75 (757)
Q Consensus 54 Le~Lr~dLr~y~~~L~~eLveL 75 (757)
+.+++.+|..|...|+..|.-+
T Consensus 43 l~e~~~~l~~~~~~l~~~l~p~ 64 (144)
T d1gs9a_ 43 MDETMKELKAYKSELEEQLTPV 64 (144)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777665443
No 8
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=17.29 E-value=1.8e+02 Score=25.96 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCCc
Q 004390 50 TFVPFETLRSELQAHLSSLNHELIDLINRDYADFVNLSTKLVD 92 (757)
Q Consensus 50 r~~sLe~Lr~dLr~y~~~L~~eLveLIN~DY~dFv~Lss~L~G 92 (757)
++..+++--+++.+-...++.+|++|+-+|=..|-.+....+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~l~~l~deD~~aF~~vm~a~kl 92 (200)
T d1o5ha_ 50 GYEDVEPEMERIVEAMEEARLKLFDLAKKDMEAFEKVMKAYKS 92 (200)
T ss_dssp TCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence 4556667777788888889999999999999999999887653
No 9
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.93 E-value=1.4e+02 Score=23.76 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004390 55 ETLRSELQAHLSSLNHEL 72 (757)
Q Consensus 55 e~Lr~dLr~y~~~L~~eL 72 (757)
..+++||+.=++.++..|
T Consensus 41 ~~~~~eL~~~l~siewdL 58 (106)
T d1lvfa_ 41 DWTTNELRNNLRSIEWDL 58 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 345666666555555443
No 10
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio parahaemolyticus [TaxId: 670]}
Probab=15.98 E-value=3.3e+02 Score=23.65 Aligned_cols=108 Identities=14% Similarity=0.106 Sum_probs=56.4
Q ss_pred Hhhhhcchh----hhhhccCCCCCCCCCcchHhhhHhHHHHHhccc---c-------ccCCCHHHHHHHHHHHHHHHHHH
Q 004390 599 DLRQLKGIT----ATYRMTNKPLPVRHSPYVSGVLRPLKTLLEGER---A-------MTYLTPEAKNELLLDAATQITSR 664 (757)
Q Consensus 599 ~L~~v~~Ip----~~YR~Tnk~~Pt~~S~YV~~il~Pl~~F~~~~~---~-------~~~l~~~~~~~~~~~v~~~v~~~ 664 (757)
+|+++..|. ++.--| |..++. |..|.+.+..=.-+.. . -|.++.|.+++++. .+...++.
T Consensus 50 pL~~lA~Is~~~~~~l~I~----p~D~~~-v~~IekAI~~s~lglnp~~dg~~Iri~iP~lT~E~R~elvK-~~k~~~E~ 123 (185)
T d1is1a_ 50 PLNQVANVVAEDARTLAIT----VFDKEL-TQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVK-IVRGEAEG 123 (185)
T ss_dssp EGGGTEEEEEEETTEEEEE----ESSTTT-HHHHHHHHHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHH-HHHHHHHH
T ss_pred cHHHHhhhccCCCceEEEE----ecccch-HHHHHHHHHhcccccccccCCceeeecCCCCcHHHHHHHHH-HHHHHHHH
Confidence 566666652 222222 555444 7777666654321110 0 13567888877664 34444444
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccccCCCCCCCCCCCCCchHHHHHH--HHHHHHHHHHHHHh
Q 004390 665 YHELAAELISVARKTESSLLKIRQGAQRRAGASSDVSDHNVSDTDKICMQ--LFLDIQEYGRSLAA 728 (757)
Q Consensus 665 Y~~~v~evL~sv~KtEeSL~RLKk~~~~~~g~~~~~~~~~~SD~dKIr~Q--L~LDv~~f~~~~~~ 728 (757)
+. .-+..+|+ +....+|+..+ +.++|.||.=+.| +.-=.+.|...+.+
T Consensus 124 ak----v~iRniRr--~~~~~ikk~~k----------~~~iseD~~k~~~~~iq~ltd~~~~~id~ 173 (185)
T d1is1a_ 124 GR----VAVRNIRR--DANNDLKALLK----------DKEISEDEDRKAQEEIQKLTDVAVKKIDE 173 (185)
T ss_dssp HH----HHHHHHHH--HHHHHHHHHHH----------TTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHH--HHHHHHHhhhc----------cCCCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 45667774 55666666554 1125666654443 44445566666643
Done!