Query 004391
Match_columns 757
No_of_seqs 209 out of 1364
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 22:38:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 100.0 5.3E-62 1.1E-66 520.1 19.3 129 573-757 166-296 (390)
2 KOG0698 Serine/threonine prote 99.9 9.8E-24 2.1E-28 223.1 16.7 107 575-753 113-225 (330)
3 PF00481 PP2C: Protein phospha 99.9 7.7E-23 1.7E-27 205.9 15.8 109 575-753 70-180 (254)
4 PLN03145 Protein phosphatase 2 99.9 6.6E-22 1.4E-26 212.9 17.6 108 576-754 139-246 (365)
5 PTZ00224 protein phosphatase 2 99.8 3.1E-19 6.8E-24 193.4 14.5 100 580-755 86-186 (381)
6 KOG0697 Protein phosphatase 1B 99.7 1.1E-16 2.4E-21 166.9 8.7 113 572-754 93-205 (379)
7 KOG0699 Serine/threonine prote 99.7 7.8E-17 1.7E-21 172.3 7.2 87 606-757 328-414 (542)
8 COG0631 PTC1 Serine/threonine 99.5 1.1E-13 2.4E-18 142.9 7.6 103 576-751 80-182 (262)
9 smart00332 PP2Cc Serine/threon 99.4 3.8E-12 8.3E-17 125.5 12.7 108 575-752 73-180 (255)
10 cd00143 PP2Cc Serine/threonine 99.3 1E-11 2.2E-16 121.5 13.2 110 574-753 69-178 (254)
11 KOG1323 Serine/threonine phosp 99.2 4.5E-11 9.9E-16 127.8 10.6 62 571-639 214-277 (493)
12 PRK14559 putative protein seri 99.2 7.8E-11 1.7E-15 135.8 10.0 60 577-638 455-514 (645)
13 PF13672 PP2C_2: Protein phosp 97.2 0.002 4.3E-08 63.2 9.2 35 604-638 93-127 (212)
14 KOG0618 Serine/threonine phosp 96.2 0.004 8.6E-08 75.2 4.1 78 608-751 609-696 (1081)
15 smart00331 PP2C_SIG Sigma fact 94.8 0.13 2.7E-06 49.9 8.1 33 606-638 83-117 (193)
16 KOG1379 Serine/threonine prote 93.1 0.19 4.1E-06 55.1 6.4 32 607-638 166-199 (330)
17 PF07228 SpoIIE: Stage II spor 80.3 8.6 0.00019 37.0 8.3 31 608-638 60-92 (193)
18 smart00332 PP2Cc Serine/threon 77.3 4.6 0.0001 40.3 5.6 46 289-334 18-63 (255)
19 cd00143 PP2Cc Serine/threonine 77.0 4 8.8E-05 40.4 5.0 47 290-336 14-61 (254)
20 COG0631 PTC1 Serine/threonine 58.6 16 0.00035 38.6 5.2 46 290-336 22-69 (262)
21 KOG0697 Protein phosphatase 1B 58.6 9.1 0.0002 42.2 3.3 31 303-333 51-81 (379)
22 PF05053 Menin: Menin; InterP 53.5 6.5 0.00014 46.5 1.4 22 291-313 169-190 (618)
23 PF08682 DUF1780: Protein of u 52.8 2.3 5.1E-05 43.4 -2.0 18 314-331 183-200 (208)
24 KOG0699 Serine/threonine prote 44.0 18 0.0004 41.1 2.9 30 298-327 43-72 (542)
25 TIGR02865 spore_II_E stage II 31.2 1.7E+02 0.0036 36.1 8.4 32 607-638 634-667 (764)
26 PF06347 SH3_4: Bacterial SH3 27.0 58 0.0013 26.3 2.5 21 294-316 26-46 (55)
27 PF06296 DUF1044: Protein of u 25.3 82 0.0018 30.6 3.6 54 282-336 45-101 (120)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.3e-62 Score=520.09 Aligned_cols=129 Identities=55% Similarity=0.820 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCcccc
Q 004391 573 HDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (757)
Q Consensus 573 h~~VLrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~ 652 (757)
|.+|++||.+||++||++|++++++++..+|++|+|||||||++|++.+|||||+|||||||++...++
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~----------- 234 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNG----------- 234 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCC-----------
Confidence 778999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred ccccccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004391 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (757)
Q Consensus 653 lg~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ 732 (757)
..|.|+|||+||++++|+|++||+++||||.++|+
T Consensus 235 ---------------------------------------------~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv 269 (390)
T KOG0700|consen 235 ---------------------------------------------SWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVV 269 (390)
T ss_pred ---------------------------------------------CeEEEEecChhhccccHHHHHHHHHhCCCCcceEe
Confidence 12699999999999999999999999999999999
Q ss_pred cC--cccCcccccccccccCccccCCC
Q 004391 733 ND--RVKGQLKVTRAFGAGFLKKVANL 757 (757)
Q Consensus 733 nd--RVkG~LaVTRAFGDg~LKqPK~l 757 (757)
++ ||||.|+|||||||+|||+|+++
T Consensus 270 ~~~~RvkG~L~vsRAfGd~~lK~~~~n 296 (390)
T KOG0700|consen 270 NKHWRVKGILQVSRAFGDGYLKWPEFN 296 (390)
T ss_pred eccceeeEEEEeeeeccceeecchhhc
Confidence 97 99999999999999999999863
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.91 E-value=9.8e-24 Score=223.14 Aligned_cols=107 Identities=41% Similarity=0.515 Sum_probs=91.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECC-eEEEEEcCCceEEEEecCCCCCCCCCCCcccc
Q 004391 575 AVLRAMAQALE-STEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQ-DVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (757)
Q Consensus 575 ~VLrALsrAL~-~TEeAfLemadk~l~~nPELalmGSTALVmLIkge-dVYVANVGDSRAVLar~~~~~~~pn~~~~kg~ 652 (757)
.+.+||.+||. +++.+|++. ......+|||+++++++.+ ++||||||||||||++++.
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~-------~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~------------- 172 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK-------REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGG------------- 172 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCC-------------
Confidence 35668999999 699998754 1224568999999999955 9999999999999998741
Q ss_pred ccccccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004391 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (757)
Q Consensus 653 lg~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ 732 (757)
+|++||.||+|..++|+.||++.+ +.|.
T Consensus 173 ------------------------------------------------~a~~Ls~DHkP~~~~E~~RI~~~G----G~v~ 200 (330)
T KOG0698|consen 173 ------------------------------------------------VAVQLSVDHKPDREDERERIEAAG----GRVS 200 (330)
T ss_pred ------------------------------------------------eeeeCCCCCCCCcHHHHHHHHHcC----CEEE
Confidence 689999999999999999999999 5665
Q ss_pred c----CcccCcccccccccccCccc
Q 004391 733 N----DRVKGQLKVTRAFGAGFLKK 753 (757)
Q Consensus 733 n----dRVkG~LaVTRAFGDg~LKq 753 (757)
+ +||.|.|+|||||||..||.
T Consensus 201 ~~~~~~Rv~G~LavsRa~GD~~~k~ 225 (330)
T KOG0698|consen 201 NWGGVWRVNGVLAVSRAFGDVELKS 225 (330)
T ss_pred EcCCcceEeceEEEeeecCCHHhcC
Confidence 4 49999999999999999994
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.89 E-value=7.7e-23 Score=205.95 Aligned_cols=109 Identities=38% Similarity=0.457 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCccccc
Q 004391 575 AVLRAMAQALES-TEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDS 653 (757)
Q Consensus 575 ~VLrALsrAL~~-TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~l 653 (757)
.+.+||..||.+ +++.+...... + +...+||||+|+||.++++||||||||||||++...
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~----~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~-------------- 130 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSEN----N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGG-------------- 130 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTE--------------
T ss_pred chhhcccceeeecccccccccccc----c-ccccccccccccccccceeEEEeeeeeeeeeeeccc--------------
Confidence 466788889988 88887653321 2 446799999999999999999999999999999872
Q ss_pred cccccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCcee-
Q 004391 654 RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF- 732 (757)
Q Consensus 654 g~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~- 732 (757)
..++||+||+|++++|+.||++.|+ .+.
T Consensus 131 -----------------------------------------------~~~~Lt~dH~~~~~~E~~RI~~~gg----~v~~ 159 (254)
T PF00481_consen 131 -----------------------------------------------IIKQLTRDHKPSNPDERERIRKAGG----RVSE 159 (254)
T ss_dssp -----------------------------------------------EEEESS---STTSHHHHHHHHHTT-----GEEE
T ss_pred -----------------------------------------------cccccccccccchhhccceeecccc----cccc
Confidence 1159999999999999999999994 444
Q ss_pred cCcccCcccccccccccCccc
Q 004391 733 NDRVKGQLKVTRAFGAGFLKK 753 (757)
Q Consensus 733 ndRVkG~LaVTRAFGDg~LKq 753 (757)
++||.|.|+|||||||.++|+
T Consensus 160 ~~rv~g~l~~sRalGd~~~k~ 180 (254)
T PF00481_consen 160 NGRVNGVLAVSRALGDFDLKP 180 (254)
T ss_dssp TEEETTTBSSSB-EE-GGGTT
T ss_pred chhhhhccccccccccccccc
Confidence 899999999999999999998
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.88 E-value=6.6e-22 Score=212.91 Aligned_cols=108 Identities=28% Similarity=0.460 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCccccccc
Q 004391 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRH 655 (757)
Q Consensus 576 VLrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~lg~ 655 (757)
+.+||.+||..++++|++... .+.. ..||||++++||.++.+||||||||||||++.+
T Consensus 139 ~~~al~~af~~~d~~~~~~~~----~~~~-~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g----------------- 196 (365)
T PLN03145 139 IEKVVSSAFLQTDTAFAEACS----LDAS-LASGTTALAALVVGRSLVVANAGDCRAVLCRRG----------------- 196 (365)
T ss_pred HHHHHHHHHHHHhHHHHhhhc----cccC-CCCcCcEEEEEEECCeEEEEecCCceEEEEcCC-----------------
Confidence 345788999999999875432 1222 349999999999999999999999999999865
Q ss_pred cccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCc
Q 004391 656 KNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDR 735 (757)
Q Consensus 656 r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ndR 735 (757)
+++|||+||++..+.|++||++.+ +.|.++|
T Consensus 197 ---------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~G----g~v~~g~ 227 (365)
T PLN03145 197 ---------------------------------------------KAIEMSRDHKPMCSKERKRIEASG----GYVYDGY 227 (365)
T ss_pred ---------------------------------------------eEEEecCCCCCCCHHHHHHHHHcC----Cceecce
Confidence 578999999999999999999988 6777889
Q ss_pred ccCcccccccccccCcccc
Q 004391 736 VKGQLKVTRAFGAGFLKKV 754 (757)
Q Consensus 736 VkG~LaVTRAFGDg~LKqP 754 (757)
+.|.|.|||||||..+|..
T Consensus 228 v~g~l~vTRalGD~~~k~~ 246 (365)
T PLN03145 228 LNGQLNVARALGDWHMEGM 246 (365)
T ss_pred ECCcccccccccccccccc
Confidence 9999999999999998753
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.80 E-value=3.1e-19 Score=193.38 Aligned_cols=100 Identities=30% Similarity=0.381 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEE-CCeEEEEEcCCceEEEEecCCCCCCCCCCCcccccccccc
Q 004391 580 MAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMK-DQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNR 658 (757)
Q Consensus 580 LsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIk-gedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~lg~r~~ 658 (757)
|.+++..+++.|++.. ...|||+++++|. +..+||+|||||||||++.+
T Consensus 86 l~~a~~~~d~~i~~~~----------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g-------------------- 135 (381)
T PTZ00224 86 MEELCLEIDEEWMDSG----------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG-------------------- 135 (381)
T ss_pred HHHHHHHHHHHHHhcc----------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC--------------------
Confidence 5567777788876321 1369999988776 68999999999999999854
Q ss_pred chhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCcccC
Q 004391 659 SRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKG 738 (757)
Q Consensus 659 sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ndRVkG 738 (757)
+++|||.||++.++.|+.||..++ ..+..+||.|
T Consensus 136 ------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~g----g~v~~~Rv~G 169 (381)
T PTZ00224 136 ------------------------------------------KLVFATEDHKPNNPGERQRIEACG----GRVVSNRVDG 169 (381)
T ss_pred ------------------------------------------EEEEcccCCCCCCHHHHhHHHHcc----CEeccccccC
Confidence 578999999999999999999988 6677889999
Q ss_pred cccccccccccCccccC
Q 004391 739 QLKVTRAFGAGFLKKVA 755 (757)
Q Consensus 739 ~LaVTRAFGDg~LKqPK 755 (757)
.|.|||||||..||.+.
T Consensus 170 ~l~vTRalGd~~~K~~~ 186 (381)
T PTZ00224 170 DLAVSRAFGDRSFKVKG 186 (381)
T ss_pred ceeeecccCCccccccc
Confidence 99999999999988653
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-16 Score=166.90 Aligned_cols=113 Identities=27% Similarity=0.391 Sum_probs=95.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCccc
Q 004391 572 DHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKD 651 (757)
Q Consensus 572 ~h~~VLrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg 651 (757)
+.+.+.+.|+..|.++++-...+.+. ..+...+||||+.+++-..++|++|+||||||||+.+
T Consensus 93 sv~~~~~GIrtGFL~iDE~mr~~~~~----~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng------------- 155 (379)
T KOG0697|consen 93 SVENVEKGIRTGFLSIDEIMRTLSDI----SKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG------------- 155 (379)
T ss_pred cHHHHHhhHhhcceeHHHHHhhhhhh----hcccccCCceEEEEEecCceEEEEecCcchhheecCC-------------
Confidence 34567888999999888876544432 2222349999999999999999999999999999987
Q ss_pred cccccccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCce
Q 004391 652 DSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAV 731 (757)
Q Consensus 652 ~lg~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I 731 (757)
+++--|.||+|..|.|++||.+++ +.|
T Consensus 156 -------------------------------------------------~~~f~TqDHKP~~p~EkeRIqnAG----GSV 182 (379)
T KOG0697|consen 156 -------------------------------------------------EVVFSTQDHKPYLPKEKERIQNAG----GSV 182 (379)
T ss_pred -------------------------------------------------ceEEeccCCCCCChHHHHHHhcCC----CeE
Confidence 345669999999999999999999 788
Q ss_pred ecCcccCcccccccccccCcccc
Q 004391 732 FNDRVKGQLKVTRAFGAGFLKKV 754 (757)
Q Consensus 732 ~ndRVkG~LaVTRAFGDg~LKqP 754 (757)
+-.||+|.|+|+|||||++||.-
T Consensus 183 MIqRvNGsLAVSRAlGDydyK~v 205 (379)
T KOG0697|consen 183 MIQRVNGSLAVSRALGDYDYKNV 205 (379)
T ss_pred EEEEecceeeeehhccCcccccC
Confidence 88999999999999999999964
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.66 E-value=7.8e-17 Score=172.26 Aligned_cols=87 Identities=37% Similarity=0.521 Sum_probs=80.4
Q ss_pred cCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCccccccccccchhhhhhhhhhcccccCCccccchhhh
Q 004391 606 ALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVN 685 (757)
Q Consensus 606 almGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~lg~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~ 685 (757)
..+|||++|+|+.+++|||||.||||+||++.+
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G----------------------------------------------- 360 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG----------------------------------------------- 360 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCC-----------------------------------------------
Confidence 458999999999999999999999999999976
Q ss_pred cccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCcccCcccccccccccCccccCCC
Q 004391 686 MMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKVANL 757 (757)
Q Consensus 686 ~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ndRVkG~LaVTRAFGDg~LKqPK~l 757 (757)
+|+.|+.||+|.++.|..||.++++ ++-..+||+|.|.++|||||++||+.+.|
T Consensus 361 ---------------kAvdmS~DHKPEDevE~~RI~~AGG---~vtlDGRVNGGLNLSRA~GDHaYK~N~~L 414 (542)
T KOG0699|consen 361 ---------------KAVDMSVDHKPEDEVETNRIHAAGG---QVTLDGRVNGGLNLSRAFGDHAYKKNQEL 414 (542)
T ss_pred ---------------ceeecccCCCcccHHHHHHHHhcCC---eEeecceecCccchhhhhhhhhhhcccCC
Confidence 6899999999999999999999993 55568999999999999999999998765
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.45 E-value=1.1e-13 Score=142.89 Aligned_cols=103 Identities=30% Similarity=0.377 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCccccccc
Q 004391 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRH 655 (757)
Q Consensus 576 VLrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~lg~ 655 (757)
..+.|.+++..+++.+..... .+.+...||||++++++.++++||||||||||||++++
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~----~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~----------------- 138 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQ----LNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG----------------- 138 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----cccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC-----------------
Confidence 677899999999999976543 35566789999999999999999999999999999986
Q ss_pred cccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecCc
Q 004391 656 KNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDR 735 (757)
Q Consensus 656 r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~ndR 735 (757)
.+.|||.||++.++.|+.||..++ .++...|
T Consensus 139 ---------------------------------------------~~~~lT~DH~~~~~~~~~~~~~~~----~~~~~~~ 169 (262)
T COG0631 139 ---------------------------------------------ELKQLTEDHSLVNRLEQRGIITPE----EARSHPR 169 (262)
T ss_pred ---------------------------------------------ceEEeccCCcHHHHHHHhcCCCHH----HHHhCcc
Confidence 578999999999999999987765 3333344
Q ss_pred ccCcccccccccccCc
Q 004391 736 VKGQLKVTRAFGAGFL 751 (757)
Q Consensus 736 VkG~LaVTRAFGDg~L 751 (757)
.. ++|||||+..+
T Consensus 170 ~~---~ltralG~~~~ 182 (262)
T COG0631 170 RN---ALTRALGDFDL 182 (262)
T ss_pred ch---hhhhhcCCCcc
Confidence 43 89999999874
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.38 E-value=3.8e-12 Score=125.49 Aligned_cols=108 Identities=43% Similarity=0.562 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCcccccc
Q 004391 575 AVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSR 654 (757)
Q Consensus 575 ~VLrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~lg 654 (757)
.+.++|.+++.+++.+++..... ..+...||||++++++..+.+|++||||||+|+.+.+
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------- 132 (255)
T smart00332 73 DVEEALRKAFLKTDEEILEELES----LEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC----------------
Confidence 47778999999999999766543 2245679999999999999999999999999999864
Q ss_pred ccccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceecC
Q 004391 655 HKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFND 734 (757)
Q Consensus 655 ~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~nd 734 (757)
...+||.||++..+.|..||...+ ..+.++
T Consensus 133 ----------------------------------------------~~~~lt~dh~~~~~~~~~~i~~~~----~~~~~~ 162 (255)
T smart00332 133 ----------------------------------------------KAVQLTEDHKPSNEDERARIEAAG----GFVING 162 (255)
T ss_pred ----------------------------------------------ceeEcCCCCCCcCHHHHHHHHHcC----CEEECC
Confidence 346999999999999999999998 466677
Q ss_pred cccCcccccccccccCcc
Q 004391 735 RVKGQLKVTRAFGAGFLK 752 (757)
Q Consensus 735 RVkG~LaVTRAFGDg~LK 752 (757)
+..+.+.+||++|+..+|
T Consensus 163 ~~~~~~~lt~~~g~~~~~ 180 (255)
T smart00332 163 RVNGVLALSRAIGDFFLK 180 (255)
T ss_pred eECCeEecccccCCHhhc
Confidence 889999999999998875
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.34 E-value=1e-11 Score=121.53 Aligned_cols=110 Identities=38% Similarity=0.523 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecCCCCCCCCCCCccccc
Q 004391 574 DAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDS 653 (757)
Q Consensus 574 ~~VLrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~~~~~~pn~~~~kg~l 653 (757)
..+..+|.++|+++++.+...... +++...+|||++++++.++.+|++||||||+|+.+..
T Consensus 69 ~~~~~~l~~~~~~~~~~l~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~--------------- 129 (254)
T cd00143 69 EDIEEALRKAFLRADEEILEEAQD----EPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG--------------- 129 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------
Confidence 357778999999999998765432 2455679999999999999999999999999998765
Q ss_pred cccccchhhhhhhhhhcccccCCccccchhhhcccccchhhhhcccceeeecCCCCCCCcHHHHHHHHHcCCCCCCceec
Q 004391 654 RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFN 733 (757)
Q Consensus 654 g~r~~sr~~~~~~el~ri~EeSp~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eeEr~RIkaehPDd~~~I~n 733 (757)
+..|||.||+...+.|+.||...++ .+..
T Consensus 130 -----------------------------------------------~~~~lt~dh~~~~~~~~~~i~~~~~----~~~~ 158 (254)
T cd00143 130 -----------------------------------------------EAVQLTKDHKPVNEEERERIEKAGG----RVSN 158 (254)
T ss_pred -----------------------------------------------ceeEcCCCCCCcChHHHHHHHHcCC----cEEe
Confidence 4679999999999999999999883 3335
Q ss_pred CcccCcccccccccccCccc
Q 004391 734 DRVKGQLKVTRAFGAGFLKK 753 (757)
Q Consensus 734 dRVkG~LaVTRAFGDg~LKq 753 (757)
.++.+...+||+||+..+|+
T Consensus 159 ~~~~~~~~~t~~lG~~~~~~ 178 (254)
T cd00143 159 GRVPGVLAVTRALGDFDLKP 178 (254)
T ss_pred CEEcCceeeccccCCccccC
Confidence 67888999999999997663
No 11
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.22 E-value=4.5e-11 Score=127.77 Aligned_cols=62 Identities=31% Similarity=0.428 Sum_probs=47.0
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-cCCCceEEEEEEECCeEEEEEcCCceEEEEecCC
Q 004391 571 IDHD-AVLRAMAQALESTEEAYMEMVEKALDTNPEL-ALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERP 639 (757)
Q Consensus 571 ~~h~-~VLrALsrAL~~TEeAfLemadk~l~~nPEL-almGSTALVmLIkgedVYVANVGDSRAVLar~~~ 639 (757)
+.|+ .|.-||..||+..++.+-.. .... ...||||+|++.--.+|||||+|||||||.+.++
T Consensus 214 Ir~E~LViGAlEsAFqemDeqiare-------r~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnde 277 (493)
T KOG1323|consen 214 IRHEHLVIGALESAFQEMDEQIARE-------RQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDE 277 (493)
T ss_pred CchHHhhHHHHHHHHHHHHHHHHHH-------HHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCC
Confidence 4454 48888888887777766321 2222 2357889999999999999999999999999874
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.16 E-value=7.8e-11 Score=135.76 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCCceEEEEecC
Q 004391 577 LRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQER 638 (757)
Q Consensus 577 LrALsrAL~~TEeAfLemadk~l~~nPELalmGSTALVmLIkgedVYVANVGDSRAVLar~~ 638 (757)
.++|.+||..+++++.++..+. ...+...||||+++++|.++.+||+||||||||+.++.
T Consensus 455 ~~~L~~ai~~AN~~I~~~~~~~--~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~ 514 (645)
T PRK14559 455 EETIREAIYLANEAIYDLNQQN--ARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRK 514 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc--ccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecC
Confidence 3568889999999997765422 12255679999999999999999999999999998654
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=97.16 E-value=0.002 Score=63.16 Aligned_cols=35 Identities=31% Similarity=0.638 Sum_probs=27.1
Q ss_pred CccCCCceEEEEEEECCeEEEEEcCCceEEEEecC
Q 004391 604 ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQER 638 (757)
Q Consensus 604 ELalmGSTALVmLIkgedVYVANVGDSRAVLar~~ 638 (757)
....++||++++++.++.++++||||||+++..+.
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~ 127 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRN 127 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEET
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEECC
Confidence 44568999999999999999999999999766543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.20 E-value=0.004 Score=75.15 Aligned_cols=78 Identities=21% Similarity=0.333 Sum_probs=59.4
Q ss_pred CCceEEEEEEEC--------CeEEEEEcCCceEEEEecCCCCCCCCCCCccccccccccchhhhhhhhhhcccccCCccc
Q 004391 608 MGSCVLVMLMKD--------QDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHN 679 (757)
Q Consensus 608 mGSTALVmLIkg--------edVYVANVGDSRAVLar~~~~~~~pn~~~~kg~lg~r~~sr~~~~~~el~ri~EeSp~~~ 679 (757)
-|..++.+.|+. ..+++||||+|-||+++.+.+
T Consensus 609 lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~--------------------------------------- 649 (1081)
T KOG0618|consen 609 LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKP--------------------------------------- 649 (1081)
T ss_pred ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCc---------------------------------------
Confidence 455667777763 358999999999999998731
Q ss_pred cchhhhcccccchhhhhcccceeeecCCC-CCCCcHHHHHHHHHcCCCCCCcee-cCcccCcccccccccccCc
Q 004391 680 QNCQVNMMNKNRDISICRLKMRAVQLSTD-HSTSVEEEIIRIKAEHPDDSQAVF-NDRVKGQLKVTRAFGAGFL 751 (757)
Q Consensus 680 ~~~e~~~~n~~~e~~~~~~~l~AlQLT~D-HSps~eeEr~RIkaehPDd~~~I~-ndRVkG~LaVTRAFGDg~L 751 (757)
+++|+- |....++|.+||+..+ ++|. ++++.|...+||++|-.++
T Consensus 650 -----------------------~p~t~~~~~~v~~eE~~RI~~~~----g~i~ed~k~ngvt~~tR~iG~~~l 696 (1081)
T KOG0618|consen 650 -----------------------LPTTRSPMLEVDREEYKRIVDSK----GFITEDNKLNGVTSSTRAIGPFSL 696 (1081)
T ss_pred -----------------------CcccccccccCCHHHHHHHHHhc----CeecCCCeeeceeeeeeecccccc
Confidence 122222 2334899999999998 6666 7899999999999998775
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=94.75 E-value=0.13 Score=49.89 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.7
Q ss_pred cCCCceEEEEEE--ECCeEEEEEcCCceEEEEecC
Q 004391 606 ALMGSCVLVMLM--KDQDVYVMNLGDSRAILAQER 638 (757)
Q Consensus 606 almGSTALVmLI--kgedVYVANVGDSRAVLar~~ 638 (757)
..+|+|++++++ ..+.++++|+||+|+++.+..
T Consensus 83 ~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~ 117 (193)
T smart00331 83 DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRAD 117 (193)
T ss_pred CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECC
Confidence 358999999988 688999999999999999843
No 16
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=93.13 E-value=0.19 Score=55.09 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.1
Q ss_pred CCCceEEEEEEE--CCeEEEEEcCCceEEEEecC
Q 004391 607 LMGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (757)
Q Consensus 607 lmGSTALVmLIk--gedVYVANVGDSRAVLar~~ 638 (757)
+.+|||+|+.|. +..||+||+|||=..+.|.+
T Consensus 166 vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G 199 (330)
T KOG1379|consen 166 VGSSTACILALDRENGKLHTANLGDSGFLVVREG 199 (330)
T ss_pred CCcceeeeeeeecCCCeEEEeeccCcceEEEECC
Confidence 456789999998 99999999999999988875
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=80.33 E-value=8.6 Score=37.00 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=26.5
Q ss_pred CCceEEEEEEE--CCeEEEEEcCCceEEEEecC
Q 004391 608 MGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (757)
Q Consensus 608 mGSTALVmLIk--gedVYVANVGDSRAVLar~~ 638 (757)
+..|++++++. .+.++++|+|++++++.+..
T Consensus 60 ~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~ 92 (193)
T PF07228_consen 60 RYATACYAIIDPETGTLTYANAGHPPPLLLRPG 92 (193)
T ss_dssp TTEEEEEEEEETTTTEEEEEEESSSEEEEEETT
T ss_pred ccceEEEEEecccceEEEEeCCCCCCEEEEecc
Confidence 67788877766 67799999999999999984
No 18
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=77.30 E-value=4.6 Score=40.28 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=37.1
Q ss_pred ccCCceEEEEEecccceEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q 004391 289 KAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKE 334 (757)
Q Consensus 289 kAGEDRVhvv~SEe~gwlFvgIYDGfnGpdA~dfl~~~Ly~~i~~e 334 (757)
+-.||++.+......++.+++|+||.+|..|..|+...+-..+.+.
T Consensus 18 ~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~ 63 (255)
T smart00332 18 KPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEE 63 (255)
T ss_pred CCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHh
Confidence 5678888776554478999999999999999999998887666553
No 19
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=77.00 E-value=4 Score=40.37 Aligned_cols=47 Identities=28% Similarity=0.404 Sum_probs=36.5
Q ss_pred cCCceEEEEEecc-cceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004391 290 AGEDRVHVVLSEE-QGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (757)
Q Consensus 290 AGEDRVhvv~SEe-~gwlFvgIYDGfnGpdA~dfl~~~Ly~~i~~eL~ 336 (757)
-.||++-+..... .+|.+++|.||.+|.....+....+-+++.+++.
T Consensus 14 ~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~ 61 (254)
T cd00143 14 TNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELE 61 (254)
T ss_pred CCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4799977643221 3899999999999998888888888877777665
No 20
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=58.63 E-value=16 Score=38.56 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=34.7
Q ss_pred cCCceEEEEE--ecccceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004391 290 AGEDRVHVVL--SEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (757)
Q Consensus 290 AGEDRVhvv~--SEe~gwlFvgIYDGfnGpdA~dfl~~~Ly~~i~~eL~ 336 (757)
..||..-+.. .+++ +.|++|+||..|..|-+++-+.+-..+-++++
T Consensus 22 ~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~ 69 (262)
T COG0631 22 HNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFD 69 (262)
T ss_pred CCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHH
Confidence 4455554443 2234 88999999999999999999888777777655
No 21
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=58.60 E-value=9.1 Score=42.16 Aligned_cols=31 Identities=26% Similarity=0.658 Sum_probs=28.1
Q ss_pred cceEEEEEecCCCCCChhHHHHHHHHHHHHH
Q 004391 303 QGWLFIGIYDGFSGPDAPDFLMSHLYRAIDK 333 (757)
Q Consensus 303 ~gwlFvgIYDGfnGpdA~dfl~~~Ly~~i~~ 333 (757)
-.|-|+++|||+-|-....|..+||...|..
T Consensus 51 ~dWSfFAVfDGHAGs~va~~c~~hLlehi~s 81 (379)
T KOG0697|consen 51 EDWSFFAVFDGHAGSQVANHCAEHLLEHIIS 81 (379)
T ss_pred cCceEEEEEcCccchHHHHHHHHHHHHHhhh
Confidence 3599999999999999999999999988853
No 22
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=53.54 E-value=6.5 Score=46.48 Aligned_cols=22 Identities=45% Similarity=0.946 Sum_probs=15.3
Q ss_pred CCceEEEEEecccceEEEEEecC
Q 004391 291 GEDRVHVVLSEEQGWLFIGIYDG 313 (757)
Q Consensus 291 GEDRVhvv~SEe~gwlFvgIYDG 313 (757)
|-..||.++||+|.|+++|= ||
T Consensus 169 g~~dvhLalSeDHawv~fg~-d~ 190 (618)
T PF05053_consen 169 GYKDVHLALSEDHAWVVFGK-DG 190 (618)
T ss_dssp T-TT-EEEE-SS-EEEEESC-CC
T ss_pred CcchheeeecCCceEEEecC-CC
Confidence 45589999999999999986 55
No 23
>PF08682 DUF1780: Protein of unknown function (DUF1780); InterPro: IPR014796 This is a family of uncharacterised proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold. ; PDB: 1Y0K_A.
Probab=52.80 E-value=2.3 Score=43.38 Aligned_cols=18 Identities=67% Similarity=1.040 Sum_probs=12.2
Q ss_pred CCCCChhHHHHHHHHHHH
Q 004391 314 FSGPDAPDFLMSHLYRAI 331 (757)
Q Consensus 314 fnGpdA~dfl~~~Ly~~i 331 (757)
|-||||||||.+||=+.|
T Consensus 183 FAhpdAP~fLr~nlGrsi 200 (208)
T PF08682_consen 183 FAHPDAPDFLRSNLGRSI 200 (208)
T ss_dssp EE-TTS-HHHHTTTT--E
T ss_pred ecCCCchHHHHhccCcee
Confidence 679999999999986644
No 24
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=43.98 E-value=18 Score=41.11 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.8
Q ss_pred EEecccceEEEEEecCCCCCChhHHHHHHH
Q 004391 298 VLSEEQGWLFIGIYDGFSGPDAPDFLMSHL 327 (757)
Q Consensus 298 v~SEe~gwlFvgIYDGfnGpdA~dfl~~~L 327 (757)
|+-=...|-|+|+|||+.|-+..-|....|
T Consensus 43 i~~ld~~t~mF~VYDGHGG~EVa~yca~kL 72 (542)
T KOG0699|consen 43 IVDLDTDTHMFGVYDGHGGTEVAKYCAAKL 72 (542)
T ss_pred cccccCcceEEEEecCCCcHHHHHHHHHhh
Confidence 344467899999999999998766655544
No 25
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=31.22 E-value=1.7e+02 Score=36.13 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=27.4
Q ss_pred CCCceEEEEEEE--CCeEEEEEcCCceEEEEecC
Q 004391 607 LMGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (757)
Q Consensus 607 lmGSTALVmLIk--gedVYVANVGDSRAVLar~~ 638 (757)
.+.+|+.+++++ .+.+.++|+|++++++.+.+
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~ 667 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA 667 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECC
Confidence 478999988885 78899999999999987653
No 26
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=26.99 E-value=58 Score=26.28 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=17.5
Q ss_pred eEEEEEecccceEEEEEecCCCC
Q 004391 294 RVHVVLSEEQGWLFIGIYDGFSG 316 (757)
Q Consensus 294 RVhvv~SEe~gwlFvgIYDGfnG 316 (757)
+|.|+ .++-+|..|- +||+.|
T Consensus 26 ~v~v~-~~~~~W~~V~-~~g~~G 46 (55)
T PF06347_consen 26 PVRVI-ECRGGWCKVR-ADGRTG 46 (55)
T ss_pred EEEEE-EccCCeEEEE-ECCeEE
Confidence 66666 6677999999 999987
No 27
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.29 E-value=82 Score=30.56 Aligned_cols=54 Identities=24% Similarity=0.262 Sum_probs=35.0
Q ss_pred Ccccc---ccccCCceEEEEEecccceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004391 282 NLQWA---HGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (757)
Q Consensus 282 nlQWA---~GkAGEDRVhvv~SEe~gwlFvgIYDGfnGpdA~dfl~~~Ly~~i~~eL~ 336 (757)
.+-|| +||-|--||-|..-.+..|+|+-||+= |-.+-..-=--..|+++-++|.
T Consensus 45 K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K-~~~~nis~~El~~lk~la~~l~ 101 (120)
T PF06296_consen 45 KKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAK-NEKANISDKELKALKKLAKELL 101 (120)
T ss_pred EEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcc-cccCCCCHHHHHHHHHHHHHHH
Confidence 34455 689999999999999999999988863 2222222222234455555544
Done!