Query 004392
Match_columns 756
No_of_seqs 364 out of 2891
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 22:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2019 Metalloendoprotease HM 100.0 1E-115 2E-120 900.7 60.3 744 1-756 66-958 (998)
2 COG1026 Predicted Zn-dependent 100.0 5E-111 1E-115 919.5 61.4 745 1-756 34-931 (978)
3 PTZ00432 falcilysin; Provision 100.0 5E-102 1E-106 917.3 76.1 751 1-756 104-1077(1119)
4 KOG0961 Predicted Zn2+-depende 100.0 1.5E-59 3.2E-64 484.6 44.0 726 13-756 45-957 (1022)
5 PRK15101 protease3; Provisiona 100.0 8.5E-54 1.8E-58 515.6 55.5 689 9-756 69-901 (961)
6 COG1025 Ptr Secreted/periplasm 100.0 6.3E-33 1.4E-37 304.6 53.0 688 9-755 49-880 (937)
7 KOG0959 N-arginine dibasic con 100.0 6E-33 1.3E-37 310.8 51.5 674 9-738 53-877 (974)
8 COG0612 PqqL Predicted Zn-depe 100.0 6.8E-35 1.5E-39 320.5 29.2 367 363-756 20-406 (438)
9 COG0612 PqqL Predicted Zn-depe 100.0 2.4E-34 5.2E-39 316.2 24.0 295 9-327 42-366 (438)
10 PF08367 M16C_assoc: Peptidase 100.0 3.6E-33 7.7E-38 279.3 23.1 247 288-537 1-248 (248)
11 KOG0960 Mitochondrial processi 100.0 1.6E-33 3.5E-38 276.2 19.7 181 9-210 58-238 (467)
12 TIGR02110 PQQ_syn_pqqF coenzym 100.0 3.4E-33 7.4E-38 311.2 22.4 292 10-324 26-345 (696)
13 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.1E-31 2.4E-36 299.2 31.3 329 364-717 4-348 (696)
14 KOG0960 Mitochondrial processi 100.0 7E-29 1.5E-33 243.8 27.2 358 364-752 38-423 (467)
15 PRK15101 protease3; Provisiona 100.0 3E-28 6.5E-33 294.1 31.2 338 363-722 47-403 (961)
16 PTZ00432 falcilysin; Provision 99.9 1E-23 2.2E-28 251.1 29.2 349 365-744 97-530 (1119)
17 KOG2067 Mitochondrial processi 99.9 2.9E-24 6.4E-29 211.7 17.2 174 10-204 50-223 (472)
18 KOG2067 Mitochondrial processi 99.9 6.4E-23 1.4E-27 202.3 22.6 331 364-723 29-386 (472)
19 PF00675 Peptidase_M16: Insuli 99.8 3.3E-20 7.2E-25 171.9 5.6 133 9-161 16-148 (149)
20 PF05193 Peptidase_M16_C: Pept 99.7 1.1E-16 2.4E-21 154.3 13.9 166 549-715 4-184 (184)
21 COG1025 Ptr Secreted/periplasm 99.7 5.2E-15 1.1E-19 164.3 27.8 327 364-712 28-372 (937)
22 KOG0959 N-arginine dibasic con 99.7 8.6E-15 1.9E-19 165.6 26.4 313 364-698 32-360 (974)
23 KOG2583 Ubiquinol cytochrome c 99.6 7.5E-15 1.6E-19 146.2 14.0 175 9-206 47-221 (429)
24 COG1026 Predicted Zn-dependent 99.5 5E-12 1.1E-16 141.4 24.4 357 367-751 29-422 (978)
25 KOG2583 Ubiquinol cytochrome c 99.5 1.1E-10 2.5E-15 116.8 30.0 357 364-753 27-408 (429)
26 PF00675 Peptidase_M16: Insuli 99.4 1.5E-12 3.2E-17 120.6 12.8 144 370-526 1-146 (149)
27 KOG2019 Metalloendoprotease HM 99.1 9.2E-09 2E-13 109.4 19.0 351 367-750 61-456 (998)
28 KOG0961 Predicted Zn2+-depende 98.9 2.2E-07 4.8E-12 99.0 23.7 344 367-739 28-407 (1022)
29 PF05193 Peptidase_M16_C: Pept 98.9 6.6E-09 1.4E-13 99.8 9.0 155 167-325 1-184 (184)
30 PF03410 Peptidase_M44: Protei 95.0 0.28 6.1E-06 51.7 11.8 187 365-595 4-194 (590)
31 PHA03081 putative metalloprote 92.7 1.2 2.7E-05 47.1 11.2 187 365-595 4-194 (595)
32 PF03410 Peptidase_M44: Protei 91.3 0.36 7.9E-06 50.8 5.6 158 14-213 27-191 (590)
33 PHA03081 putative metalloprote 86.6 1.5 3.2E-05 46.5 6.2 158 14-213 27-191 (595)
34 PF09851 SHOCT: Short C-termin 51.6 37 0.00081 21.4 4.0 22 696-717 10-31 (31)
35 PF08367 M16C_assoc: Peptidase 39.1 36 0.00077 34.1 4.0 72 27-100 111-193 (248)
36 PF12108 SF3a60_bindingd: Spli 22.2 64 0.0014 20.0 1.4 11 170-180 16-26 (28)
37 PF03295 Pox_TAA1: Poxvirus tr 21.1 77 0.0017 23.4 1.9 24 652-676 34-57 (63)
38 PF05838 Glyco_hydro_108: Glyc 20.4 82 0.0018 25.4 2.2 25 162-186 39-64 (83)
No 1
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-115 Score=900.71 Aligned_cols=744 Identities=59% Similarity=0.945 Sum_probs=690.7
Q ss_pred CceeccCCCcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhH
Q 004392 1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF 80 (756)
Q Consensus 1 ~~~~~~~~~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~ 80 (756)
+|+.++|+|++|+++++++|++.+|++|+|||.++|||.+||.+++|++||++++.+++||+|++|+|.|+++++++++|
T Consensus 66 lhl~reD~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf 145 (998)
T KOG2019|consen 66 LHLDREDENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDF 145 (998)
T ss_pred EeeccCCCCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCcccccccccccceeccCCCC---CCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCC
Q 004392 81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPS---EDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVD 157 (756)
Q Consensus 81 ~~~l~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~~---~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 157 (756)
.++.++|+|+.+.|.+...+ |.|||||+|..++. ++..+||||++||++..++|.++.+..+++.+||++.|+..
T Consensus 146 ~NL~dVYLDAtffPklr~~d--F~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~ 223 (998)
T KOG2019|consen 146 YNLRDVYLDATFFPKLRKLD--FQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVN 223 (998)
T ss_pred HHHHHHhhhcccchHHHhhh--hhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCcccccccc
Confidence 99999999999999999999 99999999986654 45569999999999999999999999999999999999999
Q ss_pred CCCCcCccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhh---------------------------------
Q 004392 158 SGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS--------------------------------- 204 (756)
Q Consensus 158 ~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~--------------------------------- 204 (756)
++|+|-.|+.+|+|++++||++||||+|+.++.+||++.++.+.+++
T Consensus 224 SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~ 303 (998)
T KOG2019|consen 224 SGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPA 303 (998)
T ss_pred CCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCceeeeecCC
Confidence 99999999999999999999999999999999999999999999887
Q ss_pred --------------------------------------------------------------------------------
Q 004392 205 -------------------------------------------------------------------------------- 204 (756)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (756)
T Consensus 304 d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGv 383 (998)
T KOG2019|consen 304 DPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGV 383 (998)
T ss_pred CCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccc
Confidence
Q ss_pred -----------------------------hcccccccccccccCCCCchhhHHHHHhhhcccccCCCCccCcCcchHHHH
Q 004392 205 -----------------------------EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMA 255 (756)
Q Consensus 205 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 255 (756)
++.++++|+..++..+. .|+.++..++..|.++.||++.|.++..+..
T Consensus 384 seediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst~---fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~ 460 (998)
T KOG2019|consen 384 SEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQSTG---FGLSLMQSIISKWINDMDPFEPLKFEEQLKK 460 (998)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccccc---hhHHHHHHHhhhhccCCCccchhhhhhHHHH
Confidence 22345555555533222 3888888889999999999999999999999
Q ss_pred HHHHHhccCCcchHHHHHHHhhccCCCeeEEEEecCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCC
Q 004392 256 LKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETP 335 (756)
Q Consensus 256 l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~ 335 (756)
|+.+++.. +..+|+.++++|+++|+|++++++.|++++.+..+..++.+|+++...+|++++..+.+....+...|++
T Consensus 461 lk~~l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~t- 538 (998)
T KOG2019|consen 461 LKQRLAEK-SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEELREKQST- 538 (998)
T ss_pred HHHHHhhh-chhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhCC-
Confidence 99999864 6679999999999999999999999999999999999999999999999999999999988888888774
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCcccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCC
Q 004392 336 DPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKD 415 (756)
Q Consensus 336 ~~~~~l~~lp~l~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~ 415 (756)
|++++|+|++.++|||+.+...++++...||++|..+..++||++|+++.++.++++++..||+++||..|++.||+.
T Consensus 539 --p~dlsClPtL~vsDIp~~~~~~~~~v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~ 616 (998)
T KOG2019|consen 539 --PEDLSCLPTLNVSDIPKTIPYTKLEVGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGD 616 (998)
T ss_pred --ccccccccccccccCCCCCCccceeeeeccCceeEEeeccCCceEEEEEeeccccCcHHhhcchHHHHHHHHhcCCCc
Confidence 589999999999999999888888888999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhcccceEEeeeeccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 004392 416 LSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARM 495 (756)
Q Consensus 416 ~~~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~ 495 (756)
.+..|+++.|...+||+|++..+++..+.+.+...+.+++.|+..+.+++++|+..++.++.|.+.++++..+.+..+++
T Consensus 617 lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~ 696 (998)
T KOG2019|consen 617 LSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRM 696 (998)
T ss_pred ccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888888889889999999999999999999999999999998899999999999999
Q ss_pred hhhhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccc
Q 004392 496 ENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKN 575 (756)
Q Consensus 496 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~ 575 (756)
.+.+.++||.+|..++.+++.+.+.+.++++|+++.+++.++.+..+.+++.+.+.|.++.+.+++.++|.+.|+.|-..
T Consensus 697 ~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q 776 (998)
T KOG2019|consen 697 TNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQ 776 (998)
T ss_pred hccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 99999999999999999999999999999999999999999999888899999999999999999999999999999977
Q ss_pred hhhHHHHHHHHHhcCCC-CCCcccccccccCCCCceEE--EeC-CCeeEEEeecccccCCCCcccHHHHHHHHhcCccch
Q 004392 576 LKNSERFVGKFLDMLPT-NSPVERVKWKAHLPSANEAI--VIP-TQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLW 651 (756)
Q Consensus 576 ~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s~L~ 651 (756)
...+++.+++|+..+|. .+......|....+.+.+.+ .+| .||+|++.+..++++++||.++++|++.+|.+..||
T Consensus 777 ~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vpyt~~d~asl~vlS~~lt~k~Lh 856 (998)
T KOG2019|consen 777 LTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLRSEAIRVVIPTFQVNYVGKAGLGVPYTHPDGASLQVLSKLLTNKWLH 856 (998)
T ss_pred chhHHHHHHHHHHhccccCCCCCccCccccCCCCceeEEEeccccchhhhhhhcccccCCCCCCcHHHHHHHHHHHHHHH
Confidence 88899999999999984 33333444544444443433 567 568999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCccccccCCCceEEEEEeeCCChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCCChhHHHHH
Q 004392 652 DRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDAKGYS 731 (756)
Q Consensus 652 ~~iRekglaYg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~~~~~~~~~ 731 (756)
.+|||||||||.+|+++...|+|+|++|||||+.++++.+....++++...+++++|++||.+++++.+.+..|..++.
T Consensus 857 ~evRekGGAYGgg~s~~sh~GvfSf~SYRDpn~lktL~~f~~tgd~~~~~~~~~~dldeAkl~~f~~VDap~~P~~kG~- 935 (998)
T KOG2019|consen 857 DEVREKGGAYGGGCSYSSHSGVFSFYSYRDPNPLKTLDIFDGTGDFLRGLDVDQQDLDEAKLGTFGDVDAPQLPDAKGL- 935 (998)
T ss_pred HHHHHhcCccCCccccccccceEEEEeccCCchhhHHHhhcchhhhhhcCCccccchhhhhhhhcccccCCcCCcccch-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhcCC
Q 004392 732 SLLRHLLGITEEERQRRREEILSTR 756 (756)
Q Consensus 732 ~~~~~~~g~~~~~~~~~~~~i~~vt 756 (756)
.+.++|+++++.|.+|++|++|+
T Consensus 936 --~~fl~gvtDemkQarREqll~vS 958 (998)
T KOG2019|consen 936 --LRFLLGVTDEMKQARREQLLAVS 958 (998)
T ss_pred --HHHHhcCCHHHHHHHHHHHHhhh
Confidence 44569999999999999999985
No 2
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=100.00 E-value=5.3e-111 Score=919.48 Aligned_cols=745 Identities=40% Similarity=0.702 Sum_probs=677.6
Q ss_pred CceeccCCCcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhH
Q 004392 1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF 80 (756)
Q Consensus 1 ~~~~~~~~~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~ 80 (756)
+|+.|+|+|++|.++++|+|.+.+|+||+|||++||||++||.+++|..++++++++++||+|+.|+|+|++++.++++|
T Consensus 34 ~hi~~~d~~~vFsi~F~T~p~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df 113 (978)
T COG1026 34 AHIKNEDPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDF 113 (978)
T ss_pred EEecCCCcCceEEEEeecCCCCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCC
Q 004392 81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGG 160 (756)
Q Consensus 81 ~~~l~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G 160 (756)
.++|++|+|++++|.++++. |.|||||+|..++ ++++.+|||++||++...++.+++++.+.+.+||+..|++.++|
T Consensus 114 ~NLl~VYlDavf~PlL~~e~--F~QEgwr~e~~~~-~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG 190 (978)
T COG1026 114 YNLLSVYLDAVFHPLLTKES--FLQEGWRIEFKDE-SNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGG 190 (978)
T ss_pred HHHHHHHHHhhhCcccchHH--HhhhhhccccCCC-ccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCC
Confidence 99999999999999999999 9999999998766 66889999999999999999999999999999999999999999
Q ss_pred CcCccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhh------------------------------------
Q 004392 161 DPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS------------------------------------ 204 (756)
Q Consensus 161 ~~~~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~------------------------------------ 204 (756)
.|..|..||+|++++||++||+|+||.++++||++++++++.++
T Consensus 191 ~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~~~~~~~~~ypi~~ 270 (978)
T COG1026 191 DPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISF 270 (978)
T ss_pred CcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccCcccccceeeccCC
Confidence 99999999999999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 004392 205 -------------------------------------------------------------------------------- 204 (756)
Q Consensus 205 -------------------------------------------------------------------------------- 204 (756)
T Consensus 271 ~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~liesglg~~~~~g~~~~~~~~~~f~v~~~gv~~e 350 (978)
T COG1026 271 DEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIESGLGFADVSGSYDSDLKETIFSVGLKGVSEE 350 (978)
T ss_pred CCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHcCCCcccccceeccccceeEEEEEecCCCHH
Confidence
Q ss_pred --------------------------hcccccccccccccCCCCchhhHHHHHhhhcccccCCCCccCcCcchHHHHHHH
Q 004392 205 --------------------------EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKA 258 (756)
Q Consensus 205 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~ 258 (756)
++.+++.|+..++. ...|.|+.+++..+.+|.+|++|.+.|++...++.|++
T Consensus 351 k~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~--~s~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~~~~~Lr~ 428 (978)
T COG1026 351 KIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEV--KSYPFGLGLMFRSLYGWLNGGDPEDSLRFLDYLQNLRE 428 (978)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhh--cCCCccHHHHHHhccccccCCChhhhhhhHHHHHHHHH
Confidence 11122233333322 35566888888889999999999999999999999998
Q ss_pred HHhccCCcchHHHHHHHhhccCCCeeEEEEecCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCCc
Q 004392 259 RLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPP 338 (756)
Q Consensus 259 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~~~ 338 (756)
.+.. ++ ||++|+++||++|+|.+++++.|+..+.+..++.+++.++.+...+|+++++++.+..+.+++.|.+++|.
T Consensus 429 ~le~--~~-~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~~lke~Q~~~dse 505 (978)
T COG1026 429 KLEK--GP-YFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSE 505 (978)
T ss_pred hhhc--Ch-HHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCCch
Confidence 8864 33 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCCCCCCCCCCCcccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCH
Q 004392 339 EALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSF 418 (756)
Q Consensus 339 ~~l~~lp~l~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~ 418 (756)
+.++++|.+++.|||+.+.+.+.+....+..+|++++.++|+++|++++|+++.++.++.||+++|..+|...||+++++
T Consensus 506 ~~~~~lP~l~~~dvp~~~~k~~l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~~llpyL~L~~~~l~~lgt~~~~y 585 (978)
T COG1026 506 EDLATLPTLKLGDVPDPIEKTSLETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPSELLPYLPLFAFALTNLGTETYSY 585 (978)
T ss_pred hhhhhccccchhcCCCcccccceeeeccCCcceEEeecCCCCeEEEEEEeecCCCChhhhhhHHHHHHHHHhcCCCCcCH
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccceEEeeeeccCC-CCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhh
Q 004392 419 VQLDQLIGRKTGGISVYPFTSSIH-GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMEN 497 (756)
Q Consensus 419 ~el~~~i~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~ 497 (756)
.++...++..+||++++.++.+.. +.+.+++.+.++++++.++++++++|+.+++.++.|+|.+|++.++.+.++++.+
T Consensus 586 ~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~ 665 (978)
T COG1026 586 KELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTS 665 (978)
T ss_pred HHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHH
Confidence 999999999999999999875544 5667899999999999999999999999999999998789999999999999999
Q ss_pred hhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHH-HHHHHHHHHHHHHcCCCCcEEEEEeCccch
Q 004392 498 RLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWA-GISSSLEEIRRSFLSREGCLINMTADGKNL 576 (756)
Q Consensus 498 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~-~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~ 576 (756)
.++++|+.+|..++.++++..+.+.+.++|++++++++++...+++..+ ++.+.|++++++++..+|+.+++.||.+..
T Consensus 666 ~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~~~~~~ 745 (978)
T COG1026 666 SVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKI 745 (978)
T ss_pred hhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEecChhhh
Confidence 9999999999999999999999999999999999999999998877666 889999999999999999989999999643
Q ss_pred hhHHHHHHHHHhcCCC---CCCccccccc---ccCCC-CceEEEeCCCeeEEEeec--ccccCCCCcccHHHHHHHHhcC
Q 004392 577 KNSERFVGKFLDMLPT---NSPVERVKWK---AHLPS-ANEAIVIPTQVNYVGKAA--NIFETGYKLNGSAYVISKHISN 647 (756)
Q Consensus 577 ~~~~~~~~~~~~~l~~---~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~al~vl~~iLg~ 647 (756)
.++.+ +++++-.+. .... +.++. ..... ..+.+.+|++++|...++ ..+++.|||++++.|++.+|++
T Consensus 746 ~~~~e--~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y~hpd~~~l~vls~~L~~ 822 (978)
T COG1026 746 LDLLE--NPLLKFLEHLLPGFEL-PTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYTHPDYAALQVLSEYLGS 822 (978)
T ss_pred HHHHH--HHhhhhhcccCccccc-CCCCCCcchhhhccccceEEeccHHHHHHHhhhccCCCCCCccchHHHHHHHHhcc
Confidence 33322 333332221 1110 11111 11112 456677788887766665 4578999999999999999999
Q ss_pred ccchhhhhhcCCCCCccccccCCCceEEEEEeeCCChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCCChhH
Q 004392 648 VWLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDA 727 (756)
Q Consensus 648 s~L~~~iRekglaYg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~~~~~ 727 (756)
++||.+||++|||||++++++...|.|+|++|||||+.++++++++.++.+..+.++++||++|+.+++++++.+.+|..
T Consensus 823 ~~lw~~IR~~GGAYGa~as~~~~~G~f~f~sYRDPn~~kt~~v~~~~v~~l~s~~~~~~d~~~~ilg~i~~~d~p~sp~~ 902 (978)
T COG1026 823 GYLWNKIREKGGAYGASASIDANRGVFSFASYRDPNILKTYKVFRKSVKDLASGNFDERDLEEAILGIISTLDTPESPAS 902 (978)
T ss_pred chhHHHHHhhccccccccccccCCCeEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcccccccCCcc
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 004392 728 KGYSSLLRHLLGITEEERQRRREEILSTR 756 (756)
Q Consensus 728 ~~~~~~~~~~~g~~~~~~~~~~~~i~~vt 756 (756)
.+...+.+++.|+++++++.++++|++||
T Consensus 903 ~~~~s~~~~~sg~~~~~~qa~re~~l~vt 931 (978)
T COG1026 903 EGSKSFYRDLSGLTDEERQAFRERLLDVT 931 (978)
T ss_pred eehhhHHHHHhcCCHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999997
No 3
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=5e-102 Score=917.27 Aligned_cols=751 Identities=35% Similarity=0.582 Sum_probs=661.2
Q ss_pred CceeccCC---CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCH
Q 004392 1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT 77 (756)
Q Consensus 1 ~~~~~~~~---~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~ 77 (756)
+|+.++|+ +++|.+++++.|.+.+|+||+||||+|+||++||.++++..+.+..+|+++||+|++|+|+|++.+.+.
T Consensus 104 l~~~~~d~~~~~~~f~i~f~T~~~d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e 183 (1119)
T PTZ00432 104 ISLKTNDSSGKEMCFDFYVPTPPHNDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNE 183 (1119)
T ss_pred EEEecCCCccceeEEEEEecCCCCCCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCH
Confidence 46777775 899999999999999999999999999999999999999888767778999999999999999987777
Q ss_pred HhHHHHHHHHHhhhhCCCCcccccccccccceeccCCC--------------CCCccchhHHHHHhhhhcCChHHHHHHH
Q 004392 78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA 143 (756)
Q Consensus 78 ~~~~~~l~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~--------------~~~~~e~~~v~~e~~~~~~~~~~~~~~~ 143 (756)
+++.++|++|+|++++|.|.+++.+|.|||||+|++++ +.+..+|+||++||++..++|..++.+.
T Consensus 184 ~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~ 263 (1119)
T PTZ00432 184 KDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSV 263 (1119)
T ss_pred HHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHH
Confidence 89999999999999999999998678999999998764 2345559999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcCccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccc------c--------
Q 004392 144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASM------N-------- 209 (756)
Q Consensus 144 ~~~~~~~~~~y~~~~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~------~-------- 209 (756)
+++.+| +|||+++++|++++|+++|+++|++||++||+|+||+|+++||+|++++++++++ .| .
T Consensus 264 ~~~~lf-~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~-~f~~~~~~~~~~~~~~~ 341 (1119)
T PTZ00432 264 IYQNLF-SNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDN-YLTKHPKTGQLSHTAYR 341 (1119)
T ss_pred HHHHHh-CCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHH-HHhhccccccccccccc
Confidence 999999 9999999999999999999999999999999999999999999999999888762 11 0
Q ss_pred -----ccc-----------------------------c---cc-----------c---c---------------------
Q 004392 210 -----TIE-----------------------------F---SL-----------R---E--------------------- 217 (756)
Q Consensus 210 -----~~~-----------------------------~---~~-----------~---~--------------------- 217 (756)
.++ + +. . +
T Consensus 342 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q 421 (1119)
T PTZ00432 342 EDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYK 421 (1119)
T ss_pred ccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHHHHHHHHHcCCCccHHHH
Confidence 000 0 00 0 0
Q ss_pred ---c-----C-C--------------------------------------------------------------------
Q 004392 218 ---N-----N-T-------------------------------------------------------------------- 220 (756)
Q Consensus 218 ---~-----~-~-------------------------------------------------------------------- 220 (756)
+ . .
T Consensus 422 ~LrE~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef~~r 501 (1119)
T PTZ00432 422 ALIDSGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIEFVMK 501 (1119)
T ss_pred HHHhcCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh
Confidence 0 0 0
Q ss_pred ----CCchhhHHHHHhhhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhccCCCeeEEEEecCc--cc
Q 004392 221 ----GSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDP--EK 294 (756)
Q Consensus 221 ----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~--~~ 294 (756)
..+|.|+.++..+...|.++++|.+.|++...++.|+..+. .++.||++|+++||++|+|.+++++.|++ ++
T Consensus 502 E~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~--~~~~y~e~Li~k~ll~N~h~~~v~~~p~~s~~~ 579 (1119)
T PTZ00432 502 ELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRID--NESKYLEKLIEKHLLNNNHRVTVHLEAVESSKY 579 (1119)
T ss_pred hccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHh--cccHHHHHHHHHHccCCCeeeEEEEecCCcccH
Confidence 00000111112233467778888888889999999998884 24569999999999999999999999999 89
Q ss_pred hhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCCccccccCCCCCCCCCCCCCCCCCCcc-----------
Q 004392 295 ASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEV----------- 363 (756)
Q Consensus 295 ~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~~~~~l~~lp~l~~~di~~~~~~~~~~~----------- 363 (756)
.+..++.++++++.++..+|++|++++.++.+.++++|+.+++++.++++|.++++||++..+.+|..+
T Consensus 580 ~~~~~~~e~~~L~~~~~~Ls~ee~~~i~~~~~~l~~~q~~~~~~e~l~~lP~l~~~DI~~~~~~~~~~~~~~~~~~~~~~ 659 (1119)
T PTZ00432 580 EKEFNKLVKDELKERLSHLTKEQVDEMEKAYEKFKKEREADDDPEHLDSFPILSLSDLNKETEEIPTKLYKLSSDSLKEN 659 (1119)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCChhHHhhcCCCcHHHcCCcccCCcchhhhccccccccc
Confidence 888899999999999999999999999999999999999999999999999999999998888777654
Q ss_pred ----cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeec
Q 004392 364 ----GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (756)
Q Consensus 364 ----~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~ 439 (756)
...+|+++++++.+|||++|+++.|+++.++.++++|+++|+.+|.+.||++++++|+...++..+||+++++...
T Consensus 660 ~~~~~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~ 739 (1119)
T PTZ00432 660 MDLDSDGGSVTVLVHPIESRGILYLDFAFSLDSLTVDELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFY 739 (1119)
T ss_pred ccccccCCCcceEEEecCCCCeEEEEEEecCCCCCHHHHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEe
Confidence 3468999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred cC------CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHh
Q 004392 440 SI------HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDA 513 (756)
Q Consensus 440 ~~------~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 513 (756)
+. .+.+.+..++.++++|+.++++++++|+.+++.++.|++.+|+++++++.++++++.+.++||.+|..++.+
T Consensus 740 ~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s 819 (1119)
T PTZ00432 740 SETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKS 819 (1119)
T ss_pred ccccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 43 234567889999999999999999999999999999998788999999999999999999999999999999
Q ss_pred ccChhhHHHHHhccchHHHHHHHHH-HHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCC
Q 004392 514 KLNTAGWISEQMGGVSYLEFLQALE-EKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPT 592 (756)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~~l~-~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~ 592 (756)
.+++...+.+.++|++++.+++++. +.++++++.+.+.|+.+++++++++|+++.|+||.+..+.+.+.+..++..++.
T Consensus 820 ~~S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~ 899 (1119)
T PTZ00432 820 KFSVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSS 899 (1119)
T ss_pred cCCHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999987 566677888999999999999999999999999998777787878888887753
Q ss_pred CC---C--ccccccc--------ccCCCCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhcCccchhhhhhcCC
Q 004392 593 NS---P--VERVKWK--------AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGG 659 (756)
Q Consensus 593 ~~---~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRekgl 659 (756)
.. . .....+. .+....++.+.+|++|+|++.|++....++++.+++.|+..+|++++||++||++||
T Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~~~~~~~~~l~Vl~~~L~~~yLw~~IR~~GG 979 (1119)
T PTZ00432 900 TFKENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFDKSDKVDGSFQVIVHYLKNSYLWKTVRMSLG 979 (1119)
T ss_pred ccccccccccccccccccccccccCCcccceEEEccCceeEEEEecccccCCCccCHHHHHHHHHHccccchHHHcccCC
Confidence 21 1 1111122 112235688889999999999877777888999999999999999999999999999
Q ss_pred CCCccccccCCCceEEEEEeeCCChhhHHHHHHhHHHHHhc--CCCCHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHH
Q 004392 660 AYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRE--LEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHL 737 (756)
Q Consensus 660 aYg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~it~~eL~~ak~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (756)
|||+++++. ..|.+.|++|||||+.+|+++++++.++|++ ..+|++||++||.+++++++.|.+|..++.+.+.+++
T Consensus 980 AYG~~~~~~-~~G~~~f~SYRDPn~~~Tl~~f~~~~~~l~~~~~~~~~~~l~~~iig~~~~~D~p~~p~~~g~~~~~~~l 1058 (1119)
T PTZ00432 980 AYGVFADLL-YTGHVIFMSYADPNFEKTLEVYKEVASALREAAETLTDKDLLRYKIGKISNIDKPLHVDELSKLALLRII 1058 (1119)
T ss_pred ccccCCccC-CCCeEEEEEecCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Confidence 999999887 4799999999999999999999999999988 5699999999999999999999999999999999999
Q ss_pred hCCCHHHHHHHHHHHhcCC
Q 004392 738 LGITEEERQRRREEILSTR 756 (756)
Q Consensus 738 ~g~~~~~~~~~~~~i~~vt 756 (756)
.|+++++++++|++|++||
T Consensus 1059 ~g~t~e~rq~~R~~il~~t 1077 (1119)
T PTZ00432 1059 RNESDEDRQKFRKDILETT 1077 (1119)
T ss_pred cCCCHHHHHHHHHHHHcCC
Confidence 9999999999999999987
No 4
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-59 Score=484.56 Aligned_cols=726 Identities=21% Similarity=0.286 Sum_probs=544.1
Q ss_pred EEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHhhhh
Q 004392 13 GIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVF 92 (756)
Q Consensus 13 ~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~ 92 (756)
.+...+|..++.|++|-|||++|.||++||.+.++....++++| +.||+|..|+|+|.++++..+.|-++|.+|+|.++
T Consensus 45 ~f~v~TEa~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~-dtNAwTDtD~T~YtLStag~dGFlklLPvy~dHiL 123 (1022)
T KOG0961|consen 45 AFSVVTEADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLA-DTNAWTDTDHTAYTLSTAGSDGFLKLLPVYIDHIL 123 (1022)
T ss_pred eEEeeeeecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhc-ccccccccCcceEEeecccccchHHHhHHHHHhhc
Confidence 34567899999999999999999999999999988777666655 59999999999999999999999999999999999
Q ss_pred CCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCC-CCCCCCCCCCCcCccCCCCHH
Q 004392 93 FPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFP-DNAYGVDSGGDPKVIPKLTFE 171 (756)
Q Consensus 93 ~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~-~~~y~~~~~G~~~~i~~lt~~ 171 (756)
.|.++++. |..|++|+..++. ++|||++||+..++.-..++.+..++.+|| .++|+..++|.+..++.+|.|
T Consensus 124 ~P~Ltdea--f~TEVyHI~geg~-----d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~lt~e 196 (1022)
T KOG0961|consen 124 TPMLTDEA--FATEVYHITGEGN-----DAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRELTLE 196 (1022)
T ss_pred Ccccchhh--hhhheeeecCCCC-----ccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHHhhHH
Confidence 99999999 9999999986543 589999999998888899999999999998 899999999999999999999
Q ss_pred HHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhh-------------------------------hcccccccccccccCC
Q 004392 172 EFKEFHRKYYHPSNARIWFYGDDDPNERLRILS-------------------------------EASMNTIEFSLRENNT 220 (756)
Q Consensus 172 ~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~-------------------------------~~~~~~~~~~~~~~~~ 220 (756)
.+|+||+++|+|+||+++|+|.||++++++..+ +...+++||+-.++.+
T Consensus 197 kIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~ 276 (1022)
T KOG0961|consen 197 KIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESR 276 (1022)
T ss_pred HHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeecCCccccc
Confidence 999999999999999999999999999998876 1123333443221111
Q ss_pred CCc--------hh------hHHHHHhhh-----ccc-----------------------------ccCCCCccCcC----
Q 004392 221 GSF--------PR------GLSLMLRSM-----GKW-----------------------------IYDMNPFEPLK---- 248 (756)
Q Consensus 221 ~~~--------~~------~~~~~~~~~-----~~~-----------------------------~~~~~~~~~l~---- 248 (756)
+.. |. .+..++..+ ..+ ...+.|.+.+.
T Consensus 277 G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVeieDP~assv~f~~~~~vrc~i~L~f~gVP~EKi~~~~~ 356 (1022)
T KOG0961|consen 277 GAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEIEDPLASSVSFHIAEGVRCDIRLNFAGVPVEKIDECAP 356 (1022)
T ss_pred ceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEecCccccceeeeeecccceeEEEeecCCcHHHhhhhhH
Confidence 100 00 000000000 000 00011111110
Q ss_pred ---------------------------------------------------------cchHHHHH--HHHHhccCCcchH
Q 004392 249 ---------------------------------------------------------YEKPLMAL--KARLAEEGSKAVF 269 (756)
Q Consensus 249 ---------------------------------------------------------~~~~l~~l--~~~~~~~~~~~~~ 269 (756)
+...+..| .+.+. +++..+|
T Consensus 357 k~l~~l~et~~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~ygnedg~~l~~~lk~l~~~~~L~-~w~~kdW 435 (1022)
T KOG0961|consen 357 KFLDKLVETANIDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGDQLYGNEDGELLKKRLKELDFLKKLK-SWPAKDW 435 (1022)
T ss_pred HHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhhhhccCcchhHHHHHHHhHHHHHHHh-hccHHHH
Confidence 00111111 11122 3455689
Q ss_pred HHHHHHhhccCCCeeEEEEecCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCCccccccCC----
Q 004392 270 SPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVP---- 345 (756)
Q Consensus 270 ~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~~~~~l~~lp---- 345 (756)
.+|+.+||.+ +..+++++.|+..+.+.+++...++++++...++++.++++-+.++..+..+.++-+...|..+.
T Consensus 436 ~~Llnk~Fve-n~s~tVia~Ps~em~e~i~kE~~~~i~~r~~~lg~~gle~l~k~L~~ak~~N~~~~p~~ll~~f~I~~p 514 (1022)
T KOG0961|consen 436 VQLLNKYFVE-NPSATVIAVPSEEMVEKIAKEEEKRIAARCEKLGKKGLEELGKSLEAAKLENTANHPSALLLDFLIVKP 514 (1022)
T ss_pred HHHHHHHhcc-CCCeEEEecCcHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHhhhcccCCCCHHHHhheeccCc
Confidence 9999999984 45678999999999999999999999999999999999999998888777666555444333321
Q ss_pred -------CCCCCCCCCCCC-C---CCCcccccCCce--EEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhh--
Q 004392 346 -------SLSLRDIPKEPI-R---VPTEVGDINGVK--VLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKE-- 410 (756)
Q Consensus 346 -------~l~~~di~~~~~-~---~~~~~~~~nG~~--v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~-- 410 (756)
..++..+...-. . -|...+.....+ +.++..|+. +|.+.++++.+.++-.++||+.+|..++..
T Consensus 515 eS~ef~~~~~v~t~~s~~pfdne~~~~~~T~~~~fp~fi~l~h~ps~-Fvel~fl~dss~i~~sl~pYl~~f~~l~~~~p 593 (1022)
T KOG0961|consen 515 ESLEFFDRFPVQTLTSNSPFDNELTPQQSTFLAQFPFFINLHHCPSK-FVELFFLLDSSNISISLRPYLFLFTDLLFESP 593 (1022)
T ss_pred hheeeeeccceeeccCCCCCCccccceeecccccCCceeecccCchH-HHhHhhhhccccCchhhhhHHHHHHHHHhcCH
Confidence 111111111100 0 000011122222 333444544 777777778888888889999999886642
Q ss_pred ---cCCCCC----CHHHHHHHHhhcccceEEeeeeccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHH
Q 004392 411 ---MGTKDL----SFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQR 483 (756)
Q Consensus 411 ---~Gt~~~----~~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~ 483 (756)
.||-.- +.+|+.+.+-......++.++.. +.+++.+.+.++|..++++..+.|+.-++....||+ +|
T Consensus 594 a~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~-----G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~-~R 667 (1022)
T KOG0961|consen 594 AMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVS-----GLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDP-SR 667 (1022)
T ss_pred HHhcCCCCcchhhhHHHHHHHHHhhhhhhhhccccc-----ccchhheeEEEEEccCCcchhHHHHHHHhhhhccCH-HH
Confidence 365443 56777777777777777776642 345788999999999999999999999999999995 99
Q ss_pred HHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCC
Q 004392 484 FKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSRE 563 (756)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~ 563 (756)
+..++++.+.+...++++ |..++.....++++....+......+.....++.+.+.++.+.+.+.+.++++++.++..+
T Consensus 668 i~~~~~~~l~~i~~~KRd-g~~vlss~~~~~lY~~~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n 746 (1022)
T KOG0961|consen 668 IHQCAQKLLGEIRDRKRD-GCTVLSSAVASMLYGKNSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSN 746 (1022)
T ss_pred HHHHHHHHHhhhhhhhcC-ccEehHHHHHHHHhcccchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998875 5777777777777878888888888988899999988888888889999999999777778
Q ss_pred CcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccc--ccccc----c--CCCCceEEEe--CCC-eeEEEeeccc-ccCC
Q 004392 564 GCLINMTADGKNLKNSERFVGKFLDMLPTNSPVER--VKWKA----H--LPSANEAIVI--PTQ-VNYVGKAANI-FETG 631 (756)
Q Consensus 564 n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~----~--~~~~~~~~~~--~~~-~~~~~~~~~~-~~~~ 631 (756)
.+.|.|+||++.++.....|..+..+..-+.+... .++.. + .......+.+ |+. .+.+....|. .++.
T Consensus 747 ~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~s~e~gsssk~~~I~~p~sESs~l~~sip~~~~w~ 826 (1022)
T KOG0961|consen 747 GVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENVSLELGSSSKELLIGVPGSESSFLYQSIPLDANWN 826 (1022)
T ss_pred ceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCcccceeccCCcceeEecCCCccccceeeecccccccC
Confidence 99999999998777777777777665433322111 11110 0 1112223333 332 3345555554 5689
Q ss_pred CCcccHHHHHHHHhc--CccchhhhhhcCCCCCccccccCCCceEEEEEeeCCChhhHHHHHHhHHHHHhc--CCCCHHH
Q 004392 632 YKLNGSAYVISKHIS--NVWLWDRVRVSGGAYGGFCDFDSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRE--LEMDDDT 707 (756)
Q Consensus 632 ~~d~~al~vl~~iLg--~s~L~~~iRekglaYg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~it~~e 707 (756)
||.++...++.++|+ .+++|+.||..|+|||++++..++.+.+++.+||.+++.++.+.-+++++.+.. ..++..+
T Consensus 827 dpel~~~~l~~~YL~~~eGPfW~~IRG~GLAYGanm~~~~d~~~~~~~iyr~ad~~kaye~~rdiV~~~vsG~~e~s~~~ 906 (1022)
T KOG0961|consen 827 DPELIPAMLFGQYLSQCEGPFWRAIRGDGLAYGANMFVKPDRKQITLSIYRCADPAKAYERTRDIVRKIVSGSGEISKAE 906 (1022)
T ss_pred CcchhHHHHHHHHHHhcccchhhhhcccchhccceeEEeccCCEEEEEeecCCcHHHHHHHHHHHHHHHhcCceeecHHH
Confidence 999999999999999 899999999999999999999999999999999999999999999999998854 5899999
Q ss_pred HHHHHHHHHhhcccCC--ChhHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 004392 708 LTKAIIGTIGDVDAYQ--LPDAKGYSSLLRHLLGITEEERQRRREEILSTR 756 (756)
Q Consensus 708 L~~ak~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vt 756 (756)
++.||.+.+..+...+ +............+.+.+..+...+.++|.+||
T Consensus 907 ~egAk~s~~~~~~~~Eng~~~~a~~~~~l~~~~q~~~~fn~~~leri~nvT 957 (1022)
T KOG0961|consen 907 FEGAKRSTVFEMMKRENGTVSGAAKISILNNFRQTPHPFNIDLLERIWNVT 957 (1022)
T ss_pred hccchHHHHHHHHHHhccceechHHHHHHHHHHhcCCcccHHHHHHHHHhh
Confidence 9999999999987654 445555556666677778888888999998886
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=8.5e-54 Score=515.64 Aligned_cols=689 Identities=13% Similarity=0.083 Sum_probs=456.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
.++|++|+..||+++.|+|||+|||+|+||++||..+-+.+.+ +..|+.+||+|+.|+|+|++ .++.++++.+|++++
T Consensus 69 ~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l-~~~Gg~~NA~T~~d~T~y~~-~~~~~~l~~aL~~~a 146 (961)
T PRK15101 69 ALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFL-KKHGGSHNASTASYRTAFYL-EVENDALPPAVDRLA 146 (961)
T ss_pred EEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHH-HHhCCCccceECCCceEEEE-EcCHHHHHHHHHHHH
Confidence 3468899999999999999999999999999998654466666 66799999999999999998 457899999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
|++.+|.|++++ +++| |++|.+|+++..++|..++.+.+.+.+|++|||+++++|++++|.++
T Consensus 147 d~~~~P~f~~~~--~erE---------------~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~ 209 (961)
T PRK15101 147 DAIAEPLLDPKN--ADRE---------------RNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDK 209 (961)
T ss_pred HHHhccCCCHHH--HHHH---------------HHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcC
Confidence 999999999999 8776 99999999988889999999999999999999999999999999997
Q ss_pred ----CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccC---CCCc-hhhHHHHHh--------
Q 004392 169 ----TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN---TGSF-PRGLSLMLR-------- 232 (756)
Q Consensus 169 ----t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~-------- 232 (756)
++++|++||++||+|+||+|+|+||+|++++.++++ ..|+.++.+..... .+.. +........
T Consensus 210 ~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~-~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (961)
T PRK15101 210 PGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAA-DTFGRVPNKNASVPEITVPVVTDAQKGIIIHYVPAQPRK 288 (961)
T ss_pred CchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHH-HHhccCCCCCCCCCCCCCCCCCHHHcCeEEEEEECCCCc
Confidence 699999999999999999999999999999999997 66666543211000 0000 000000000
Q ss_pred -hhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhcc--------------CCCeeEEEEecCc--cch
Q 004392 233 -SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN--------------NPHCVTVEMQPDP--EKA 295 (756)
Q Consensus 233 -~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~p~~--~~~ 295 (756)
..-.|..+... ... .......+...++++.++.++..|.++.+.. +.|.+.+.+.|+. ...
T Consensus 289 ~l~l~~~~p~~~-~~~-~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~~~~~g~f~i~~~~~~~~~~~~~ 366 (961)
T PRK15101 289 VLRVEFRIDNNS-AKF-RSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMVDRNSGVFAISVSLTDKGLAQRD 366 (961)
T ss_pred EEEEEEecCCcH-HHH-hhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeeccccccCCCceEEEEEEEcChHHHHhHH
Confidence 00112111100 000 0113344555565544444665564442210 1122333333321 223
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCC---------------Ccc---------------cccc--
Q 004392 296 SRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPD---------------PPE---------------ALRS-- 343 (756)
Q Consensus 296 ~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~---------------~~~---------------~l~~-- 343 (756)
+......+++.+.+..+++++|++++|+....-..+++... +++ .+..
T Consensus 367 ~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 446 (961)
T PRK15101 367 QVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTMLRVPVEHTLDAPYIADRYDPKAIKARL 446 (961)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhhhCCHHHheeCchhhhcCCHHHHHHHH
Confidence 33444555555556899999999999986542111111000 000 0000
Q ss_pred --C-----------CCCC-------------CCCCC-------------------CCCC---------------CCCCcc
Q 004392 344 --V-----------PSLS-------------LRDIP-------------------KEPI---------------RVPTEV 363 (756)
Q Consensus 344 --l-----------p~l~-------------~~di~-------------------~~~~---------------~~~~~~ 363 (756)
+ |..+ +++|+ ..-. ..|...
T Consensus 447 ~~l~~~n~~i~~~~~~~~~~~~~~~~~~~Y~~~~i~~~~~~~~~~~~~~~~l~lP~~n~fip~~~~~~~~~~~~~~p~~i 526 (961)
T PRK15101 447 AEMTPQNARIWYISPQEPHNKTAYFVDAPYQVDKISEQTFADWQQKAQNIALSLPELNPYIPDDFSLIKADKAYKHPELI 526 (961)
T ss_pred hhcCHhHEEEEEEeCCCCCCccccccCCcceeecCCHHHHHHHhcCCCCccCCCCCCCCccCCCCeeccCCCCCCCCeEE
Confidence 0 1100 00110 0000 012222
Q ss_pred cccCCceEEEeecC---CCcEEEEEEEeeCCCCC--cccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeee
Q 004392 364 GDINGVKVLQHDLF---TNDVLYTEVVFDMSSLK--QELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFT 438 (756)
Q Consensus 364 ~~~nG~~v~~~~~~---~~~~v~~~~~~~~~~l~--~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~ 438 (756)
...||++|++.+.+ ..|.+.+.+.|..+... ........++..++ +.+..++....+..|.+++.+ +
T Consensus 527 ~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~~ll------~~~l~e~~y~a~~aG~~~~~~-~- 598 (961)
T PRK15101 527 VDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALNDYLA------GLALDQLSNQASVGGISFSTN-A- 598 (961)
T ss_pred EcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHHHHH------HHHHHHHhchHHhcCcEEEEc-c-
Confidence 45799999999876 67899999999887643 33445566777665 235556666666666666666 3
Q ss_pred ccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChh
Q 004392 439 SSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTA 518 (756)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 518 (756)
.+++.+++++++++++.+++++.+++.+|.|++ ++++..++..++.+.+...+.+...+...+ .....
T Consensus 599 ---------~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~-~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~--~~~~~ 666 (961)
T PRK15101 599 ---------NNGLMVNANGYTQRLPQLLQALLEGYFSFTPTE-EQLAQAKSWYREQLDSAEKGKAYEQAIMPA--QMLSQ 666 (961)
T ss_pred ---------CCCEEEEEEecChhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHhhhcccCcHHHHHHHH--HHHhc
Confidence 588999999999999999999999999999996 777777777777776554433322222211 11122
Q ss_pred hHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcc-
Q 004392 519 GWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVE- 597 (756)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~- 597 (756)
+++.. ..+..+.++.+ +.++|++||+++|.+.+++++|+||++ .+++.++++++++.|+..+...
T Consensus 667 ~py~~---~~~~~~~l~~i----------t~edl~~f~~~~~~~~~~~~~v~GNi~-~~ea~~l~~~~~~~l~~~~~~~~ 732 (961)
T PRK15101 667 VPYFE---RDERRKLLPSI----------TLKDVLAYRDALLSGATPEFLVVGNLT-EEQVTTLARDVQKQLGADGTEWW 732 (961)
T ss_pred CCCCC---HHHHHHHHhcC----------CHHHHHHHHHHHHHhceEEEEEEcCCC-HHHHHHHHHHHHHHhccCCcccc
Confidence 22210 11122222222 368999999999999999999999997 6789999999988886432110
Q ss_pred cccccccCCCCceEEEe-C-CCeeEEEeecccccCCCCcccHHHHHHHHhc---Cccchhhhhhc-CCCCCccccccCCC
Q 004392 598 RVKWKAHLPSANEAIVI-P-TQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDSHS 671 (756)
Q Consensus 598 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRek-glaYg~~~~~~~~~ 671 (756)
........+.....+.. + ...+.+..++..++. +..+..+++.+|| +|+||++||++ ||+|+|++++....
T Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~lLg~~~ssrlf~~LRtk~qLgY~V~s~~~~~~ 809 (961)
T PRK15101 733 RGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTGY---DEYQSSAYSSLLGQIIQPWFYNQLRTEEQLGYAVFAFPMSVG 809 (961)
T ss_pred cccceEeCCCCeEEEecCCCCCCCeEEEEEEeCCC---CCHHHHHHHHHHHHHHhHHHHHHHHHHhhhceEEEEEeeccC
Confidence 00000001111111211 1 122333333322221 3477888888888 79999999986 99999999988777
Q ss_pred ceEEEEEeeCC---ChhhHHHHHHhHHHHH--hcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHH-hCCCHHH
Q 004392 672 GVFSFLSYRDP---NLLKTLDIYDGTVDFL--RELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHL-LGITEEE 744 (756)
Q Consensus 672 g~~~~~~~~~~---~~~~~~~~~~~~~~~l--~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~-~g~~~~~ 744 (756)
+.+.+.++..+ ++....+.+...++.+ .-.++|++||+++|..+++++... .++...+.+.+.... .+.+.+.
T Consensus 810 ~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~~lt~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~fd~ 889 (961)
T PRK15101 810 RQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLRAMKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMRFDS 889 (961)
T ss_pred CeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCcCh
Confidence 77666655522 3444444444433332 113799999999999999999875 589999998887765 5678999
Q ss_pred HHHHHHHHhcCC
Q 004392 745 RQRRREEILSTR 756 (756)
Q Consensus 745 ~~~~~~~i~~vt 756 (756)
++++++.|.+||
T Consensus 890 ~~~~~~~i~~vT 901 (961)
T PRK15101 890 RDKIIAQIKLLT 901 (961)
T ss_pred HHHHHHHHHcCC
Confidence 999999998886
No 6
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-33 Score=304.61 Aligned_cols=688 Identities=16% Similarity=0.176 Sum_probs=411.0
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
-+++++|+..+|.+..|+|||+|||+|.||++||..+-|...|.. -||.-||+|..+.|+|+|.. ..+.|..+++.++
T Consensus 49 AL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLsk-hgGs~NA~T~~~~T~fyFeV-~~~al~~ALDrFa 126 (937)
T COG1025 49 ALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSK-HGGSHNASTAGERTAFYFEV-ENDALEGALDRFA 126 (937)
T ss_pred eEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHH-cCCccccccCCCceeEEEEe-cHHHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999954 48899999999999999954 6689999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCC-
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK- 167 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~- 167 (756)
|++.+|.|..+. .++| |.+|-+|..+...+..+++++.....+=|+||+++.+.|+.+++..
T Consensus 127 ~ff~~PLf~~e~--~dRE---------------~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~~ 189 (937)
T COG1025 127 DFFIEPLFNKEA--LDRE---------------RNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSDK 189 (937)
T ss_pred HHHhccccChHH--HHHH---------------HHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCccccCCCChhhhccC
Confidence 999999999988 6655 9999999999888889998888888888899999999999999988
Q ss_pred ---CCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccCCCCchh-hHH---HHHhhh------
Q 004392 168 ---LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPR-GLS---LMLRSM------ 234 (756)
Q Consensus 168 ---lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~------ 234 (756)
-..++|++||++||.++||+++++|+-+++++.+++. ..|+.|+-..+..+....|. +-. ..+...
T Consensus 190 p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~-~~F~~Ipn~~~~~p~~p~p~~~d~~t~~ii~i~p~~~~~ 268 (937)
T COG1025 190 PGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAA-DLFGDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRP 268 (937)
T ss_pred CCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHH-HHhCcCCCCCCCCCCCCCCCCChHHhCceEEeccCCCCc
Confidence 6789999999999999999999999999999999996 77777765444322211121 100 000000
Q ss_pred ---cccccCCCCccCcCc-chHHHHHHHHHhccCCcchHHHHHHHhhcc----------CCCe-eEEEEe-cCccchh--
Q 004392 235 ---GKWIYDMNPFEPLKY-EKPLMALKARLAEEGSKAVFSPLIEKYILN----------NPHC-VTVEMQ-PDPEKAS-- 296 (756)
Q Consensus 235 ---~~~~~~~~~~~~l~~-~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~----------~~~~-~~~~~~-p~~~~~~-- 296 (756)
-.|.-... .-.+ .+....+...++.+....+..-|-++.+++ .+.. +.+++. -+.+...
T Consensus 269 ~L~i~f~i~~~---~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~~n~~~f~is~~LT~~Gl~~~~ 345 (937)
T COG1025 269 RLRIYFPIDDN---SAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPISGNYGVFAISYELTDKGLAHYD 345 (937)
T ss_pred eEEEEEEcCCc---ccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccccCCcceEEEEeehhhcchhhHH
Confidence 01110000 0011 233455666666554443444343333321 1111 222222 1222221
Q ss_pred hHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCCCCCcc------------cccc-------CCC----------
Q 004392 297 RDEAAEKEILAKV-KSSMTKEDLAELARATEELRLKQETPDPPE------------ALRS-------VPS---------- 346 (756)
Q Consensus 297 ~~~~~~~e~l~~~-~~~~t~~el~~~k~~~~~~~~~~~~~~~~~------------~l~~-------lp~---------- 346 (756)
......-++++-. ..++-.-.++++.+-......+.++..+.. .++. +|.
T Consensus 346 ~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~~t~~~~~~~~l~~~m~~~p~~~~~~~~~~~~~yd~~~~~~~l 425 (937)
T COG1025 346 RVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPSKTRPMDYVSWLADNMEREPVEHTLYASLVLPRYDPKAIQERL 425 (937)
T ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccccCChHHHHHHHHHhcccCChhhhhchhhcccccCHHHHHHHH
Confidence 1233444455543 455555555555443322222222111100 0000 000
Q ss_pred -----------------------------CCCCC-------------------CCCCCCCCCCc---------------c
Q 004392 347 -----------------------------LSLRD-------------------IPKEPIRVPTE---------------V 363 (756)
Q Consensus 347 -----------------------------l~~~d-------------------i~~~~~~~~~~---------------~ 363 (756)
..+++ +|..-+-+|.+ +
T Consensus 426 ~~~~pen~R~~lis~~~~~~~~a~~~~~py~v~~~~~~~~~~~~~~~~~~~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll 505 (937)
T COG1025 426 ALMTPENARLWLISKLEEHDKAAYFYGFPYQVDDYTAQPLDAWQQKADSIELSLPEPNPFIPDDVSLIKSEKKFTFPQLL 505 (937)
T ss_pred HhhCccceEEEEecCCCCccccceeecCcceecchhhhhhhhhhcccccccccCCCCCCCCCccccccccccCCCCchhh
Confidence 00000 00000001111 1
Q ss_pred cccCCceEEEeec--C-CCcEEEEEEEeeCCCC-Cccc-ccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeee
Q 004392 364 GDINGVKVLQHDL--F-TNDVLYTEVVFDMSSL-KQEL-LPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFT 438 (756)
Q Consensus 364 ~~~nG~~v~~~~~--~-~~~~v~~~~~~~~~~l-~~~~-~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~ 438 (756)
....|.+++++.. + +.|-..+.+.|..-.. +... .-...+++.+.. .-+.++.+ . ..-+|+++++..
T Consensus 506 ~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~la~-dal~~~~y---~----A~~aG~sfs~~~ 577 (937)
T COG1025 506 SEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAYLAN-DALDKLSY---Q----ASLAGLSFSLAA 577 (937)
T ss_pred hcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHHHHH-HHHHhhhh---H----HHhcceEEEeec
Confidence 1234556655432 2 2245555555554322 2111 122333343332 23333433 1 122344444432
Q ss_pred ccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChh
Q 004392 439 SSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTA 518 (756)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 518 (756)
. ...+.+++++-.+.++.++.-+-+.+.+-.+++ +++.....+..+++++...+.+...+..-+....-+.
T Consensus 578 ~--------~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~-~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~ 648 (937)
T COG1025 578 N--------SNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDE-DRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVP 648 (937)
T ss_pred C--------CCceEEEeeccccchHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCC
Confidence 1 367889999999999999999999999988884 8999999999999999888887777666665554431
Q ss_pred hHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcc-
Q 004392 519 GWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVE- 597 (756)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~- 597 (756)
..+..+.++.+.. ...+++..|...++++.-+...|.|+.+ .+++.++.+.....++......
T Consensus 649 --------~~s~~e~~~~l~~-------v~~~e~~~f~~~l~~~~~lE~lv~Gn~~-~~da~~l~~~~~~~l~~~~s~~~ 712 (937)
T COG1025 649 --------YWSREERRNALES-------VSVEEFAAFRDTLLNGVHLEMLVLGNLT-EADATNLAETLQKKLPAIGSTWY 712 (937)
T ss_pred --------CcCHHHHHHHhhh-------ccHHHHHHHHHHhhhccceeeeeeccch-HHHHHHHHHHHHhhhcccCCccc
Confidence 1223334443321 2356788888889998999999999997 5677777765554444322210
Q ss_pred -cccccccCCCCceEEEe--CCCeeEEEeecccccCCCC-cccHHHHHHHHhcCccchhhhhhc-CCCCCccccccC---
Q 004392 598 -RVKWKAHLPSANEAIVI--PTQVNYVGKAANIFETGYK-LNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFDS--- 669 (756)
Q Consensus 598 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-d~~al~vl~~iLg~s~L~~~iRek-glaYg~~~~~~~--- 669 (756)
...+.. ...+...... +.+.+-.++......+++. +.....++.+++. ..+|..||.| .+-|-|++.+..
T Consensus 713 ~~~~~~~-~~~~~~~~e~~~~~~~~an~~i~~~~~~~~~~~~a~s~Ll~~l~~-~~ff~~LRTkeQLGY~Vfs~~~~v~~ 790 (937)
T COG1025 713 RNPSVYL-LKGGTRIFETVGGESDSANAAILYPQQYDEIKSSALSSLLGQLIH-PWFFDQLRTKEQLGYAVFSGPREVGR 790 (937)
T ss_pred CCCceec-cCCCeeEeeeccCCcccccceeEeccccchHHHHHHHHHHHHHHh-HHhHHHhhhhhhcceEEEecceeecC
Confidence 001111 1112122211 1111111111111223322 2223335555554 6889999976 688888887653
Q ss_pred CCce-EEEEEeeCCChhhHHHHHHhHHHHH--hcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhC-CCHHH
Q 004392 670 HSGV-FSFLSYRDPNLLKTLDIYDGTVDFL--RELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLG-ITEEE 744 (756)
Q Consensus 670 ~~g~-~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g-~~~~~ 744 (756)
..|. |.+.+.+.+ +...++.++.-++.. .-.+++++++++.|..+++++..+ .+....+.+.+.....| ++.+.
T Consensus 791 ~~gi~f~vqS~~~~-p~~L~~r~~~F~~~~~~~l~~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~~~~~g~~~Fd~ 869 (937)
T COG1025 791 TPGIGFLVQSNSKS-PSYLLERINAFLETAEPELREMSEEDFEQIKKALINQILQPPQNLAEEASRLWKAFGRGNLDFDH 869 (937)
T ss_pred ccceEEEEeCCCCC-hHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHhccCCCCcCc
Confidence 2332 222233222 223333333333322 123689999999999999999876 58888888888666555 33445
Q ss_pred HHHHHHHHhcC
Q 004392 745 RQRRREEILST 755 (756)
Q Consensus 745 ~~~~~~~i~~v 755 (756)
.+..++.+...
T Consensus 870 ~ek~i~~vk~L 880 (937)
T COG1025 870 REKKIEAVKTL 880 (937)
T ss_pred HHHHHHHHHhc
Confidence 55555555544
No 7
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-33 Score=310.79 Aligned_cols=674 Identities=17% Similarity=0.149 Sum_probs=398.4
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
.+.+++||..||.+..|+|||+|||+|.||++||..+.+...+ ...||+-||+|..++|+|+|.. ..+.|+.+|+.++
T Consensus 53 al~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~l-sk~gGssNA~T~~e~T~y~F~V-~~~~l~~ALDrFa 130 (974)
T KOG0959|consen 53 ALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFL-SKNGGSSNAYTDSEHTNYYFDV-QHDHLEGALDRFA 130 (974)
T ss_pred eeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHH-HhcCCccccccccccceEEEec-chHHHHHHHHHHH
Confidence 5569999999999999999999999999999999999999998 4559999999999999999966 6688999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
+.+.+|.|.++. .++| +..|.+|.++..++..++..+......=|+|||++.++|+.++|...
T Consensus 131 qFf~~Plf~~~a--~eRE---------------v~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~~ 193 (974)
T KOG0959|consen 131 QFFSDPLFNKSA--TERE---------------VGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLLEG 193 (974)
T ss_pred HHhhCcccChHH--HHHH---------------HHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhccccchhhhhhc
Confidence 999999999998 7765 89999999998888888888888888888999999999999999999
Q ss_pred C-----HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccC-C---CCchhhHHHHHh-------
Q 004392 169 T-----FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-T---GSFPRGLSLMLR------- 232 (756)
Q Consensus 169 t-----~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~------- 232 (756)
. +++|++||++||.+++|+++|+|+.+.+.+..++. ..|+.++-...+.+ . +..|..+...+.
T Consensus 194 p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~-~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~v~pik~~ 272 (974)
T KOG0959|consen 194 PREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVT-RLFDEISNKKKPRPVFPEPPFLPEELKKLVRVVPIKDG 272 (974)
T ss_pred cccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHH-HHcccccccCCCCCcccCCCCChHHhCcEEEEEecccc
Confidence 8 99999999999999999999999999999999875 65655443222110 0 111111110000
Q ss_pred --hhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhcc----------CCCe-eEEEE-ecCccch--h
Q 004392 233 --SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN----------NPHC-VTVEM-QPDPEKA--S 296 (756)
Q Consensus 233 --~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~----------~~~~-~~~~~-~p~~~~~--~ 296 (756)
..-.|..+ |....-..+....+...++.+..+.+...|.+..+.. ..+. +.+++ -.+.++. +
T Consensus 273 ~~l~is~~~p--~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~as~~~~f~v~idLtd~G~e~~~ 350 (974)
T KOG0959|consen 273 RSLMISWPVP--PLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEFASGYSFFNVSIDLTDEGLEHVD 350 (974)
T ss_pred ceEEEEEecC--CcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCccccccceEEEEEEeccccchhHH
Confidence 01123211 1111111333455666666554445666665553321 1111 11222 2333443 2
Q ss_pred hHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHHHHhCCCCCccc-------cccCCC----------------------
Q 004392 297 RDEAAEKEILAKVKSSMTK-EDLAELARATEELRLKQETPDPPEA-------LRSVPS---------------------- 346 (756)
Q Consensus 297 ~~~~~~~e~l~~~~~~~t~-~el~~~k~~~~~~~~~~~~~~~~~~-------l~~lp~---------------------- 346 (756)
.......++++.++..-.+ --++...+.-.....++.+..+.+. +..+|.
T Consensus 351 ~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Frf~~k~~p~~~~~~~~~nlq~~P~~~il~~~~ll~~~~p~~i~~~~ 430 (974)
T KOG0959|consen 351 EIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFRFQDKEPPMEYASEIASNLQYYPVEDVLTGSYLLTEFDPDLIQEVL 430 (974)
T ss_pred HHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhheeecccCCcHHHHHHHHhhcccCChHHhhcchhhhhhcChHHHHHHH
Confidence 2334455555544332222 1223332222222334443322111 011110
Q ss_pred -------------------------------CCCCCCCCCC-----------------------------------CCCC
Q 004392 347 -------------------------------LSLRDIPKEP-----------------------------------IRVP 360 (756)
Q Consensus 347 -------------------------------l~~~di~~~~-----------------------------------~~~~ 360 (756)
-..+|++..+ ...|
T Consensus 431 ~~L~p~n~~v~~~s~~~~~~~d~~E~~ygt~y~~e~i~~~~~~~~~~~~~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P 510 (974)
T KOG0959|consen 431 SSLVPSNMRVILVSRSFEGKTDKAEPWYGTAYKVEDIPAEIIKEWENSHLNPELHLPTPNEFIPTDFSILPAPIPKLEYP 510 (974)
T ss_pred HhcCcccceeeeeeeccccccccccceeccccccccCCHHHHHHhhccCccccccCCCCCcccccccccccccCccccCC
Confidence 0111111100 0001
Q ss_pred CcccccCCceEEEeecC--CCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeee
Q 004392 361 TEVGDINGVKVLQHDLF--TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFT 438 (756)
Q Consensus 361 ~~~~~~nG~~v~~~~~~--~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~ 438 (756)
.-.......++++++.+ ..|-.++.+.|..-... ..+....++.++....+..++...-... ..|..++.+.+
T Consensus 511 ~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~--~~~~~~~l~~l~~~~l~d~l~E~~Y~A~--~aGl~~~~~~s- 585 (974)
T KOG0959|consen 511 VLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGAT--QSPLNSVLSTLYVRLLKDQLNEYLYPAL--LAGLTYSLSSS- 585 (974)
T ss_pred eeeecCCcceeEEecccccccchhheeeeecCcccc--cCHHHHHHHHHHHHHHHHHHhHHHHHHH--hccceEEeeec-
Confidence 11112234456555433 23333444444332111 1123333333333322222322222222 22223333333
Q ss_pred ccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChh
Q 004392 439 SSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTA 518 (756)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 518 (756)
..++.+++.+.++++.-+++.+.+++.+-..+ ++++..+.+.....+.+...++|+..|.......+-+.
T Consensus 586 ---------~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~-~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~lll~~~ 655 (974)
T KOG0959|consen 586 ---------SKGVELRVSGFNEKLPLLLEKVVQMMANFELD-EDRFEIIKELLKRELRNHAFDNPYQLANDYLLLLLEES 655 (974)
T ss_pred ---------CCceEEEEeccCcccHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHhhcc
Confidence 45678889999999999999999988888866 48999999999999999888889988887776665432
Q ss_pred hHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccc
Q 004392 519 GWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVER 598 (756)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~ 598 (756)
. ..-.+.++.+.. ...+++..|-..++++--+...|.||++ .+++.++++...+.+....+...
T Consensus 656 ~--------W~~~e~~~al~~-------~~le~~~~F~~~~~~~~~~e~~i~GN~t-e~~A~~l~~~v~d~l~~~~~~~~ 719 (974)
T KOG0959|consen 656 I--------WSKEELLEALDD-------VTLEDLESFISEFLQPFHLELLIHGNLT-EKEALQLLKSVLDILKSAAPNSR 719 (974)
T ss_pred c--------cchHHHHHHhhc-------ccHHHHHHHHHHHhhhhheEEEEecCcc-hHHHHHHHHHHHhhhhccCCCCc
Confidence 1 222233333321 2356777777777777789999999997 46777777777666621111111
Q ss_pred ccc--------cccCCCCceEEEe-C---CCeeEEE-eecccccCCCCcccHHHHHHHHhcCccchhhhhh--c-CCCCC
Q 004392 599 VKW--------KAHLPSANEAIVI-P---TQVNYVG-KAANIFETGYKLNGSAYVISKHISNVWLWDRVRV--S-GGAYG 662 (756)
Q Consensus 599 ~~~--------~~~~~~~~~~~~~-~---~~~~~~~-~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRe--k-glaYg 662 (756)
+.. ....+.+...+.. + .+.+.+. .-..+-..+..+...+.++..++. .++|.-+|. + |+.++
T Consensus 720 p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~~~~~~~~~~~L~~~li~-ep~Fd~LRTkeqLGYiv~ 798 (974)
T KOG0959|consen 720 PLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGVQDTRDNAVLGLLEQLIK-EPAFDQLRTKEQLGYIVS 798 (974)
T ss_pred cccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEcccchhHHHHHHHHHHHHhc-cchHHhhhhHHhhCeEee
Confidence 100 0011222222211 2 1111111 111111123345567778888886 688999994 4 66666
Q ss_pred ccccccCCCceE--EEEEeeCCChhhHHHHHHhHHHHHhc--CCCCHHHHHHHHHHHHhhccc-CCChhHHHHHHHHHHH
Q 004392 663 GFCDFDSHSGVF--SFLSYRDPNLLKTLDIYDGTVDFLRE--LEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHL 737 (756)
Q Consensus 663 ~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~l~~--~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~ 737 (756)
.+++.. .|.. .+.+...-++.-...-|...++.+.+ ...++++.+.-+.+++..... +.+......+.+....
T Consensus 799 ~~~r~~--~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei~ 876 (974)
T KOG0959|consen 799 TGVRLN--YGTVGLQITVQSEKSVDYLEERIESFLETFLEEIVEMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEII 876 (974)
T ss_pred eeeeee--cCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHHH
Confidence 666655 3333 33332222233322333333332211 247999999999999988864 4555555555555444
Q ss_pred h
Q 004392 738 L 738 (756)
Q Consensus 738 ~ 738 (756)
.
T Consensus 877 ~ 877 (974)
T KOG0959|consen 877 I 877 (974)
T ss_pred h
Confidence 3
No 8
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=6.8e-35 Score=320.45 Aligned_cols=367 Identities=15% Similarity=0.139 Sum_probs=289.7
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeecc
Q 004392 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~ 440 (756)
.++.||+++++.+.++.+.+.+++++++|+..+ ...+.+|++.|++++ ||++++..++.+.++..||..|++|+
T Consensus 20 ~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fk-gt~~~~~~~i~~~~~~~G~~~na~ts--- 95 (438)
T COG0612 20 FTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFK-GTTGLPSAELAEAFEKLGGQLNAFTS--- 95 (438)
T ss_pred EEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHcc-CCCCCChHHHHHHHHHhcCeeecccc---
Confidence 357899999999999999999999999887643 455677888888885 99999988999999999999999998
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+++.++.+++++++++++++++|++.+|.|++ +.++..+...++++..... ++..++...+...+++.++
T Consensus 96 -------~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~-~~~e~Ek~vil~ei~~~~d-~p~~~~~~~l~~~~~~~~p 166 (438)
T COG0612 96 -------FDYTVYYLSVLPDNLDKALDLLADILLNPTFDE-EEVEREKGVILEEIRMRQD-DPDDLAFERLLEALYGNHP 166 (438)
T ss_pred -------chhhhhhhhhchhhhHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhhcc-CchHHHHHHHHHHhhccCC
Confidence 688888888999999999999999999999996 4444444444444444433 3678888888888888888
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
++....| ..+.++.+ ..++|++||+++|+|+||+|+|+||++ .+++.+.++++|+.|+...++ ...
T Consensus 167 ~~~~~~G--~~e~I~~i----------t~~dl~~f~~k~Y~p~n~~l~vvGdi~-~~~v~~~~~~~f~~~~~~~~~-~~~ 232 (438)
T COG0612 167 LGRPILG--TEESIEAI----------TREDLKDFYQKWYQPDNMVLVVVGDVD-AEEVVELIEKYFGDLPGAAPP-PKI 232 (438)
T ss_pred CCCCCCC--CHHHHHhC----------CHHHHHHHHHHhcCcCceEEEEecCCC-HHHHHHHHHHHHccCCccCCC-CCC
Confidence 8665544 34555554 358999999999999999999999997 588999999999999862111 111
Q ss_pred ccccCCCCceEEEe--C----CCeeEEEeecccccCCCC-cccHHHHHHHHhc---Cccchhhhhhc-CCCCCccc--cc
Q 004392 601 WKAHLPSANEAIVI--P----TQVNYVGKAANIFETGYK-LNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFC--DF 667 (756)
Q Consensus 601 ~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~-d~~al~vl~~iLg---~s~L~~~iRek-glaYg~~~--~~ 667 (756)
...+.......+.+ + ..+.++..|++.++..++ +++++.|++.+|| +||||.+|||+ |+||++++ .+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~ 312 (438)
T COG0612 233 PPEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDF 312 (438)
T ss_pred CCccccCCCceEEecCCCCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeecccccc
Confidence 11122222222222 1 234577788888777666 7899999999999 69999999997 99999985 44
Q ss_pred cCCCceEEEEEeeC-CChhhHHHHHHhHHHHHhcC---CCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCH
Q 004392 668 DSHSGVFSFLSYRD-PNLLKTLDIYDGTVDFLREL---EMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITE 742 (756)
Q Consensus 668 ~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~---~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~ 742 (756)
....|.+.++...+ ++..++.+.+.++++.+.+. .+|+++++++|..+.+.+... .+|...+.........|.+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 392 (438)
T COG0612 313 LSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSL 392 (438)
T ss_pred ccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCc
Confidence 44567776665554 47788999999999877555 499999999999999999886 48999988888888888888
Q ss_pred HHHHHHHHHHhcCC
Q 004392 743 EERQRRREEILSTR 756 (756)
Q Consensus 743 ~~~~~~~~~i~~vt 756 (756)
...+++.+.|.+||
T Consensus 393 ~~~~~~~~~i~~vt 406 (438)
T COG0612 393 ITLEELLERIEAVT 406 (438)
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999998886
No 9
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=316.15 Aligned_cols=295 Identities=23% Similarity=0.276 Sum_probs=214.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
.++|++|++.|++++.|+|||||||+|+||++++..++...+ +..|+..||+|++|+|+|++. +.+++++.++++++
T Consensus 42 ~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~--~~~G~~~na~ts~d~t~y~~~-~l~~~~~~~l~lla 118 (438)
T COG0612 42 DVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAF--EKLGGQLNAFTSFDYTVYYLS-VLPDNLDKALDLLA 118 (438)
T ss_pred EEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHH--HHhcCeeeccccchhhhhhhh-hchhhhHHHHHHHH
Confidence 457999999999999999999999999999999888754444 677999999999999999986 68899999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
|++++|.|++++ |++| |++|++|+++..++|..++...+.+.+|++|||+++++|++++|+++
T Consensus 119 d~l~~p~f~~~~--~e~E---------------k~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~i 181 (438)
T COG0612 119 DILLNPTFDEEE--VERE---------------KGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAI 181 (438)
T ss_pred HHHhCCCCCHHH--HHHH---------------HHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHhC
Confidence 999999999999 8876 99999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccc-c-ccccCC-C----------CchhhHHHHHhhhc
Q 004392 169 TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF-S-LRENNT-G----------SFPRGLSLMLRSMG 235 (756)
Q Consensus 169 t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~-~-~~~~~~-~----------~~~~~~~~~~~~~~ 235 (756)
|+++|++||++||+|+||+|+|+||||++++.++++ ..++..+. . ...... + ..|....+....+.
T Consensus 182 t~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (438)
T COG0612 182 TREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIE-KYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDLEQAWLA 260 (438)
T ss_pred CHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHH-HHHccCCccCCCCCCCCccccCCCceEEecCCCCchhhhhhhh
Confidence 999999999999999999999999999999999997 54443331 0 000000 0 00000011122222
Q ss_pred ccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhc------------c-CCCeeEEEEecCccchhhHHHHH
Q 004392 236 KWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL------------N-NPHCVTVEMQPDPEKASRDEAAE 302 (756)
Q Consensus 236 ~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~------------~-~~~~~~~~~~p~~~~~~~~~~~~ 302 (756)
.+..+.+.. ......++..++..+++..++++|..+.++.-+ + ..+.+.+...+.. .+...+..
T Consensus 261 ~g~~~~~~~-~~~~~~~~~l~~~llgg~~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i 337 (438)
T COG0612 261 LGYPGPDYD-SPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPEN--PEKTAELV 337 (438)
T ss_pred ccccCcCcC-cchhhHHHHHHHHHhCCCcchHHHHHHHHhcCceeeeccccccccccCCceEEEEecCCC--hhhHHHHH
Confidence 222221111 112234455555555555567899988877211 1 2223333333322 12223333
Q ss_pred HHHHHHH-Hh---cCCHHHHHHHHHHHHH
Q 004392 303 KEILAKV-KS---SMTKEDLAELARATEE 327 (756)
Q Consensus 303 ~e~l~~~-~~---~~t~~el~~~k~~~~~ 327 (756)
.+.++.. .. .+|++++++.|+....
T Consensus 338 ~~~~~~~~~~~~~~~t~~~~~~~k~~~~~ 366 (438)
T COG0612 338 EEILKALKKGLKGPFTEEELDAAKQLLIG 366 (438)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3444333 22 2899999999985543
No 10
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=100.00 E-value=3.6e-33 Score=279.28 Aligned_cols=247 Identities=34% Similarity=0.570 Sum_probs=210.6
Q ss_pred EecCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCCccccccCCCCCCCCCCCCCCCCCCcccccC
Q 004392 288 MQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDIN 367 (756)
Q Consensus 288 ~~p~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~~~~~l~~lp~l~~~di~~~~~~~~~~~~~~n 367 (756)
+.|++++.+..++.+++.++..+..+|++|++++.++.+.+.++|++++ +++++|.++++||++..+.+|..+...+
T Consensus 1 m~P~~~~~~~~~~~e~~~L~~~k~~Ls~~e~~~i~~~~~~L~~~Q~~~d---~~~~LP~L~~~Di~~~~~~~~~~~~~~~ 77 (248)
T PF08367_consen 1 MKPDPGLSEKQEEEEKEKLAAYKASLSEEEKEKIIEQTKELKERQEAED---DLATLPTLSLSDIPREIEKIPLEVEKLG 77 (248)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHCS-----HHTTS----GGGS-SS------EECCCT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhCChh---hHHHHccccHHhcCCCCCCCCceeeecC
Confidence 5789999999999999999999999999999999999999999999766 8889999999999999999998888889
Q ss_pred CceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeecc-CCCCCC
Q 004392 368 GVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS-IHGKED 446 (756)
Q Consensus 368 G~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~-~~~~~~ 446 (756)
|++|++++.+|||++|+++.|+++.++.++.+++++|+.+|.+.||+++++.|++..+..++||+++++.+.+ ..+.+.
T Consensus 78 ~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~ 157 (248)
T PF08367_consen 78 GIPVLFHEQPTNGIVYVRLYFDLSDLPEEDLPYLPLLTDLLGELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDK 157 (248)
T ss_dssp TCEEEEEE---TTEEEEEEEEE-TTS-CCCHCCHHHHHHHCCCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECC
T ss_pred CccEEEEEcCCCCeEEEEEEecCCCCCHHHHHhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997654 445677
Q ss_pred CceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhc
Q 004392 447 PCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMG 526 (756)
Q Consensus 447 ~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 526 (756)
+..++.++++|+.++++++++|+.+++.+|.|++.+|++.++.+.+.++++++.++||.+|..++.+.+++.+.+.+.++
T Consensus 158 ~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~~rl~~ll~~~~s~~~~~i~~~Gh~~A~~ra~s~~s~~~~~~e~~~ 237 (248)
T PF08367_consen 158 YRPYLVISAKCLDEKLDEAFELLSEILTETDFDDKERLKELLKELKSDMESSIISSGHSYAMSRASSYLSRSGALDELWS 237 (248)
T ss_dssp CEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTT-HHHHHHHHHH
T ss_pred eeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHHHHHHHHc
Confidence 89999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHH
Q 004392 527 GVSYLEFLQAL 537 (756)
Q Consensus 527 g~~~~~~l~~l 537 (756)
|++++.|+++|
T Consensus 238 Gl~~~~fl~~L 248 (248)
T PF08367_consen 238 GLSQYKFLKDL 248 (248)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHhC
Confidence 99999999864
No 11
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=276.19 Aligned_cols=181 Identities=19% Similarity=0.267 Sum_probs=168.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
-++|++||++|.+..+|+|||||||+|+||++.+...+-.+. +.+|+.+||+|++|+|+|+. .+.++++++++++|+
T Consensus 58 GVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEi--eniGahLNAytSReqT~yya-kal~~dv~kavdiLa 134 (467)
T KOG0960|consen 58 GVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEI--ENIGAHLNAYTSREQTVYYA-KALSKDVPKAVDILA 134 (467)
T ss_pred EEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHH--HHHHHHhcccccccceeeeh-hhccccchHHHHHHH
Confidence 468999999999999999999999999999999887754555 78899999999999999995 568899999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
|++.+..+.+.+ |++| |++|+.||+....+-...++++++...|.++|+++++.|+.++|++|
T Consensus 135 DIlqns~L~~s~--IerE---------------R~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si 197 (467)
T KOG0960|consen 135 DILQNSKLEESA--IERE---------------RDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSI 197 (467)
T ss_pred HHHHhCccchhH--HHHH---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhh
Confidence 999999999998 8776 99999999988888899999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccc
Q 004392 169 TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNT 210 (756)
Q Consensus 169 t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~ 210 (756)
+++||++|-++||.++||+|+.+|.|+++++.++++ +.|+.
T Consensus 198 ~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~-k~fg~ 238 (467)
T KOG0960|consen 198 SRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAE-KYFGD 238 (467)
T ss_pred hHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHH-HHcCC
Confidence 999999999999999999999999999999999997 55554
No 12
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=3.4e-33 Score=311.18 Aligned_cols=292 Identities=15% Similarity=0.148 Sum_probs=214.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
++|++||++|++++.|+|||+|||+|+||++++..+-+.+.+ +.+|+.+||+|+.|+|+|++ .++.++++.+|+++.|
T Consensus 26 l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~l-e~lGG~lNA~Ts~d~T~y~~-~v~~~~l~~aL~lLaD 103 (696)
T TIGR02110 26 LRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWV-QRQGGQVNATTLERTTAFFF-ELPAAALAAGLARLCD 103 (696)
T ss_pred EEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHH-HHhCCeEEEEEcCCeEEEEE-EecHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999864355555 67799999999999999997 4578999999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++.+|.|++++ |++| |++|++|++...++|..++.+.+.+.+|++|||+++++|+.++|.+++
T Consensus 104 ~l~~P~f~eee--ierE---------------r~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it 166 (696)
T TIGR02110 104 MLARPLLTAED--QQRE---------------REVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPN 166 (696)
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcc
Confidence 99999999999 8776 999999999989999999999999999999999999999999999876
Q ss_pred ---HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccc--cC-CCCchhh-HHH----HHhhhcccc
Q 004392 170 ---FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE--NN-TGSFPRG-LSL----MLRSMGKWI 238 (756)
Q Consensus 170 ---~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~--~~-~~~~~~~-~~~----~~~~~~~~~ 238 (756)
.++|++||++||+|+||+|+|+||++++++.++++ ..++.++..... .. .+....+ ..+ .....-.|.
T Consensus 167 ~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e-~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~l~~~ 245 (696)
T TIGR02110 167 TAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAA-RFGASLAAGGECAQAPPAPLLRFDRLTLAGGSEPRLWLLFA 245 (696)
T ss_pred cchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHH-HHhCCCCCCCCCCCCCCCCCCCCceeEEEecCcceEEEEEe
Confidence 99999999999999999999999999999999996 544433211100 00 0000000 000 000000121
Q ss_pred cCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhc----------c-C--CCeeEEEEecC--ccchhhHHHHHH
Q 004392 239 YDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL----------N-N--PHCVTVEMQPD--PEKASRDEAAEK 303 (756)
Q Consensus 239 ~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~----------~-~--~~~~~~~~~p~--~~~~~~~~~~~~ 303 (756)
....+. .....+..++..++++.+++++..++++.+. + + .|.+.+.+.+. ....+......+
T Consensus 246 ~p~~~~---~d~~al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~g~~lf~I~~~lt~~~~~~~~~v~~~i~~ 322 (696)
T TIGR02110 246 LAGLPA---TARDNVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDAGQALLALEFSARCISAAAAQQIEQLLTQ 322 (696)
T ss_pred ecCCCC---CChHHHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCCCCcEEEEEEEEcCCCccCHHHHHHHHHH
Confidence 111111 1123467788888777677799988875321 1 1 22334444332 223333333334
Q ss_pred HHHHHHHh--cCCHHHHHHHHHH
Q 004392 304 EILAKVKS--SMTKEDLAELARA 324 (756)
Q Consensus 304 e~l~~~~~--~~t~~el~~~k~~ 324 (756)
++.+..+. +++.+|++++|+.
T Consensus 323 ~L~~L~~~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 323 WLGALAEQTWAEQLEHYAQLAQR 345 (696)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHh
Confidence 33333466 7999999999984
No 13
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.1e-31 Score=299.15 Aligned_cols=329 Identities=10% Similarity=0.007 Sum_probs=246.8
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHH-HHHHHHhhcccceEEeeeecc
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFV-QLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~-el~~~i~~~~g~~~~~~~~~~ 440 (756)
++.||++|++.+.++.+++.+.++|+.|+..+ +..+..+++++||+ .||++++.. +|.+.++.+||.+|++|+
T Consensus 4 tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLF-kGT~~~~~~~~i~~~le~lGG~lNA~Ts--- 79 (696)
T TIGR02110 4 TLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLF-LGGERFQGDDRLMPWVQRQGGQVNATTL--- 79 (696)
T ss_pred EcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHh-cCCCCCCcHHHHHHHHHHhCCeEEEEEc---
Confidence 46899999999999999999999999998654 33455667778777 599999985 899999999999999998
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+++.|++++++++++.+|++++|++.+|.|++ +.+++.+...++++..... ++...+...+...++++|+
T Consensus 80 -------~d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~e-eeierEr~vvl~Ei~~~~d-dp~~~~~~~l~~~l~~~HP 150 (696)
T TIGR02110 80 -------ERTTAFFFELPAAALAAGLARLCDMLARPLLTA-EDQQREREVLEAEYIAWQN-DADTLREAALLDALQAGHP 150 (696)
T ss_pred -------CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCC
Confidence 789999999999999999999999999999996 5555555555555554443 4456677777777788888
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
|... .+++.+.++.+. ..+.++|++||+++|.|+|++|+|+||++ .++++++++++|+.|+.........
T Consensus 151 y~~~--~iGt~esL~~it-------~~t~edL~~F~~~~Y~p~NmvLvIvGdvs-~eel~~l~e~~f~~~~~~~~~~~~~ 220 (696)
T TIGR02110 151 LRRF--HAGSRDSLALPN-------TAFQQALRDFHRRHYQAGNMQLWLQGPQS-LDELEQLAARFGASLAAGGECAQAP 220 (696)
T ss_pred CCCC--CCCCHHHHhCcc-------cchHHHHHHHHHHhcchhcEEEEEEeCCC-HHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 7543 344444554321 12468999999999999999999999997 6889999999999997654321111
Q ss_pred ccccCCCCceEEE-eCCCeeEEEeecccccCCCCcccHHHHHHHHhc---CccchhhhhhcCCCCCccccccC-CCc--e
Q 004392 601 WKAHLPSANEAIV-IPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDS-HSG--V 673 (756)
Q Consensus 601 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~~-~~g--~ 673 (756)
..+........+. ...++.+++++++..+..+++ ++.+++.+|| +|+|+.+||++|+||++++++.. ..| .
T Consensus 221 ~~p~~~~~~~~~~~~~~~q~~l~~~~p~~~~~d~~--al~lL~~iLg~g~sSrL~~~LRe~GLaysV~s~~~~~~~g~~l 298 (696)
T TIGR02110 221 PAPLLRFDRLTLAGGSEPRLWLLFALAGLPATARD--NVTLLCEFLQDEAPGGLLAQLRERGLAESVAATWLYQDAGQAL 298 (696)
T ss_pred CCCCCCCceeEEEecCcceEEEEEeecCCCCCChH--HHHHHHHHhCCCcchHHHHHHHHCCCEEEEEEeccccCCCCcE
Confidence 1111111212222 234556777777766555544 6899999999 68999999999999999986532 245 5
Q ss_pred EEEEEeeC---C-ChhhHHHHHHhHHHHHhcC--CCCHHHHHHHHHHHHh
Q 004392 674 FSFLSYRD---P-NLLKTLDIYDGTVDFLREL--EMDDDTLTKAIIGTIG 717 (756)
Q Consensus 674 ~~~~~~~~---~-~~~~~~~~~~~~~~~l~~~--~it~~eL~~ak~~~~~ 717 (756)
|.++.... + +..++.+.+.+.++.+++. +++.+|++++|..-+.
T Consensus 299 f~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~~~ 348 (696)
T TIGR02110 299 LALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRRFQ 348 (696)
T ss_pred EEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Confidence 55554431 2 5667888888888888777 8999999999998555
No 14
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7e-29 Score=243.76 Aligned_cols=358 Identities=12% Similarity=0.063 Sum_probs=262.6
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|..... .....++.+|+++|+..+ +..+.++|+.+|.++ ||++++...+...++.+|+.+|++++
T Consensus 38 tL~NGlrVaTE~~-~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFK-GT~~Rs~~alElEieniGahLNAytS---- 111 (467)
T KOG0960|consen 38 TLPNGLRVATEHN-SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFK-GTKNRSQAALELEIENIGAHLNAYTS---- 111 (467)
T ss_pred EcCCCcEEEeccC-CCcceEEEEEeccCccccccccccHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHhccccc----
Confidence 4789999988766 566788999999998643 445667788888885 99999999999999999999999998
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQ--QRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (756)
++.+.|+++|+++++++++++|+|++.+..+.+. ++.+.++.++.++.+... ....++.+-+..+.+.
T Consensus 112 ------ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~----~eVVfdhLHatafQgt 181 (467)
T KOG0960|consen 112 ------REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNH----QEVVFDHLHATAFQGT 181 (467)
T ss_pred ------ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhcCC
Confidence 8999999999999999999999999999999863 355555555555555432 2355555555566666
Q ss_pred HHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 004392 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (756)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (756)
|++..+-| ..+.++.+ .+++|++|.+.+|.+.+|+++.+|.++ .++++++++++||+++.......+
T Consensus 182 PL~~tilG--p~enI~si----------~r~DL~~yi~thY~~~RmVlaaaGgV~-He~lv~la~k~fg~~~~~~~~~~~ 248 (467)
T KOG0960|consen 182 PLGRTILG--PSENIKSI----------SRADLKDYINTHYKASRMVLAAAGGVK-HEELVKLAEKYFGDLSKLQTGDKV 248 (467)
T ss_pred cccccccC--hhhhhhhh----------hHHHHHHHHHhcccCccEEEEecCCcC-HHHHHHHHHHHcCCCcccccCcCC
Confidence 76554333 33444444 358999999999999999999999997 588999999999998753322111
Q ss_pred ccc-cc-CCCCceEEEe-CCCeeEEEeecccccCCCCcccHHHHHHHHhc------------CccchhhhhhcCCCCCcc
Q 004392 600 KWK-AH-LPSANEAIVI-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVSGGAYGGF 664 (756)
Q Consensus 600 ~~~-~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~iRekglaYg~~ 664 (756)
+.. +. ..+...++.. +.|..|++++..++++.+||+.+++|+++|+| .|+|-+.+-+..||-+..
T Consensus 249 ~~~~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~~~l~~sfq 328 (467)
T KOG0960|consen 249 PLVPPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQLCHSFQ 328 (467)
T ss_pred CCCCCccccCceeeecCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHHHHHHHHHh
Confidence 111 11 1222222222 46788999999999999999999999999999 478888887766664432
Q ss_pred cc--ccCCCceEEEEEeeCCChh---hHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCC---Ch-hHHHHHHHHH
Q 004392 665 CD--FDSHSGVFSFLSYRDPNLL---KTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQ---LP-DAKGYSSLLR 735 (756)
Q Consensus 665 ~~--~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~---~~-~~~~~~~~~~ 735 (756)
++ -+.+.|+|.++..++ ++. ..+..+.+.+..|.. .+|+.|++|||..+..++.... +| .....+...-
T Consensus 329 sFnt~YkDTGLwG~y~V~~-~~~~iddl~~~vl~eW~rL~~-~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~ 406 (467)
T KOG0960|consen 329 SFNTSYKDTGLWGIYFVTD-NLTMIDDLIHSVLKEWMRLAT-SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLT 406 (467)
T ss_pred hhhcccccccceeEEEEec-ChhhHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhh
Confidence 22 223689998887774 444 333444444455555 7999999999999988886543 33 3344555555
Q ss_pred HHhCCCHHHHHHHHHHH
Q 004392 736 HLLGITEEERQRRREEI 752 (756)
Q Consensus 736 ~~~g~~~~~~~~~~~~i 752 (756)
+...++..+...+++.|
T Consensus 407 ~Grri~l~El~~rId~v 423 (467)
T KOG0960|consen 407 YGRRIPLAELEARIDAV 423 (467)
T ss_pred cCCcCChHHHHHHHhhc
Confidence 66778888777777665
No 15
>PRK15101 protease3; Provisional
Probab=99.96 E-value=3e-28 Score=294.11 Aligned_cols=338 Identities=14% Similarity=0.042 Sum_probs=248.1
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCC-HHHHHHHHhhcccceEEeeeec
Q 004392 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLS-FVQLDQLIGRKTGGISVYPFTS 439 (756)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~-~~el~~~i~~~~g~~~~~~~~~ 439 (756)
.++.||++|++.+.++.+.+.+.+++++|+..+ +..+.+|+++|||+ .||++++ ..++++.++.+||.+|++|+
T Consensus 47 ~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf-~GT~~~p~~~~~~~~l~~~Gg~~NA~T~-- 123 (961)
T PRK15101 47 IRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVL-MGSKKYPQPDSLAEFLKKHGGSHNASTA-- 123 (961)
T ss_pred EEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHh-cCCccCCCcchHHHHHHHhCCCccceEC--
Confidence 368899999999999999999999999998754 34456677778777 5999996 68999999999999999998
Q ss_pred cCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 004392 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (756)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (756)
.+.+.|++.+++++++.+|+++++++.+|.|++ +.+.+.+....+++..... ++...+...+...++++|
T Consensus 124 --------~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~-~~~erE~~~v~~E~~~~~~-~~~~~~~~~~~~~~~~~h 193 (961)
T PRK15101 124 --------SYRTAFYLEVENDALPPAVDRLADAIAEPLLDP-KNADRERNAVNAELTMARS-RDGMRMAQVSAETINPAH 193 (961)
T ss_pred --------CCceEEEEEcCHHHHHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHhhCCCCC
Confidence 689999999999999999999999999999997 4444444444444443333 344555666666777888
Q ss_pred HHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 004392 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (756)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (756)
+++.... +..+.++.+.+ ..+.++|++||+++|.|+||+++|+||++ .+++.++++++|+.||......+.
T Consensus 194 p~~~~~~--G~~etl~~~~~------~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~-~~~l~~~~~~~F~~~~~~~~~~~~ 264 (961)
T PRK15101 194 PGSRFSG--GNLETLSDKPG------SKLQDALVDFYQRYYSANLMKAVIYSNQP-LPELAKLAADTFGRVPNKNASVPE 264 (961)
T ss_pred CcccCCC--CCHHHhhcCCc------hHHHHHHHHHHHHhCcccceEEEEEcCCC-HHHHHHHHHHHhccCCCCCCCCCC
Confidence 8765433 34445544210 12568999999999999999999999997 788999999999999865422111
Q ss_pred ccccc-C--CCCceEEEeC-CCeeEEEeecccccCCCC-cccHHHHHHHHhc---CccchhhhhhcCCCCCccccccC--
Q 004392 600 KWKAH-L--PSANEAIVIP-TQVNYVGKAANIFETGYK-LNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDS-- 669 (756)
Q Consensus 600 ~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-d~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~~-- 669 (756)
...++ . .........| .++..+.++|+.++..+. +..+..+++.+|| .++|+..++++|+||++++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~~~g~l~~~L~~~gla~~v~s~~~~~~ 344 (961)
T PRK15101 265 ITVPVVTDAQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNRSPGTLSDWLQKQGLAEGISAGADPMV 344 (961)
T ss_pred CCCCCCCHHHcCeEEEEEECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCCCCCcHHHHHHHcCccceeeecccccc
Confidence 10111 1 1111222223 345566677776654322 3346788999998 46788888888999999987653
Q ss_pred --CCceEEEEEeeCC----ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC
Q 004392 670 --HSGVFSFLSYRDP----NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY 722 (756)
Q Consensus 670 --~~g~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~ 722 (756)
..|.|.+++...+ +..++++.+.+.++.+++.+++++|++++|..+..++...
T Consensus 345 ~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~ 403 (961)
T PRK15101 345 DRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYP 403 (961)
T ss_pred CCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCC
Confidence 2466666555444 3456777777777788889999999999999998887543
No 16
>PTZ00432 falcilysin; Provisional
Probab=99.92 E-value=1e-23 Score=251.12 Aligned_cols=349 Identities=9% Similarity=0.043 Sum_probs=242.4
Q ss_pred ccCCceEEEeecCC--CcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcc--cceEEeeeecc
Q 004392 365 DINGVKVLQHDLFT--NDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKT--GGISVYPFTSS 440 (756)
Q Consensus 365 ~~nG~~v~~~~~~~--~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~--g~~~~~~~~~~ 440 (756)
..||++|++...+. .+.+.+.++|+++. .+..+..|+++|+++ +||++++..++...++..| +.+|++|+
T Consensus 97 ~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~--~d~~G~aH~LEH~~f-~GS~k~p~~~~~~~l~~~gl~~~lNA~T~--- 170 (1119)
T PTZ00432 97 KKTGLQVISLKTNDSSGKEMCFDFYVPTPP--HNDKGIPHILEHSVL-SGSKKYNYKDSFSLLVQGGFNSFLNAYTF--- 170 (1119)
T ss_pred cCCCCEEEEEecCCCccceeEEEEEecCCC--CCCcchhHHHHHHHh-CCCCCCCcccHHHHHHhcCcCCCccccCC---
Confidence 35999999887554 35688899999885 445577788888887 5999999999999998766 67899997
Q ss_pred CCCCCCCceEEEEEEEeccc-cHHHHHHHHHHHHhcCCCCcHHHH---------------------------------HH
Q 004392 441 IHGKEDPCCCMVVRGKAMAG-QAEDLFNLFNCVLQEVQLTDQQRF---------------------------------KQ 486 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~-~l~~~l~ll~~~l~~p~f~~~~~~---------------------------------~~ 486 (756)
.+.+.|.+.++.+ ++..+++++.|++++|.|++.+.+ +.
T Consensus 171 -------~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kg 243 (1119)
T PTZ00432 171 -------KDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSG 243 (1119)
T ss_pred -------CCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhh
Confidence 7999999999985 699999999999999999763310 22
Q ss_pred HHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcE
Q 004392 487 FVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCL 566 (756)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~ 566 (756)
|+- +++.... +++...+...+.+.++ +++|+...+|.+ +.+..+ +.++|++||+++|+|+|++
T Consensus 244 VV~---~Emk~~~-~~p~~~~~~~~~~~lf-~~pY~~~~~G~~--~~I~~l----------t~e~l~~Fh~~~Y~P~N~~ 306 (1119)
T PTZ00432 244 IVY---SEMKKRF-SDPLSFGYSVIYQNLF-SNVYKYDSGGDP--KDIVEL----------TYEELVEFYKTYYGPKTAT 306 (1119)
T ss_pred HHH---HHHHHhh-CCHHHHHHHHHHHHHh-CCCCCCCCCCCh--HhhccC----------CHHHHHHHHHHhcCccceE
Confidence 222 2333222 2456677777766666 778766555552 334333 3589999999999999999
Q ss_pred EEEEeCccchhhHHHHHHHHHhcCCCCCCcc----c--cccccc---CCCCceEEEe-----CCCeeEEEe-ecccc-c-
Q 004392 567 INMTADGKNLKNSERFVGKFLDMLPTNSPVE----R--VKWKAH---LPSANEAIVI-----PTQVNYVGK-AANIF-E- 629 (756)
Q Consensus 567 i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~----~--~~~~~~---~~~~~~~~~~-----~~~~~~~~~-~~~~~-~- 629 (756)
|+|+||++ .+++.+.++++|+.+|...... + .....+ .....+.+.. +.++..+.+ +|+.+ .
T Consensus 307 l~v~Gdid-~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~ 385 (1119)
T PTZ00432 307 VYFYGPND-VTERLEFVDNYLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKH 385 (1119)
T ss_pred EEEEcCCC-HHHHHHHHHHHHhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCcc
Confidence 99999996 7889999999998887542110 0 000000 0011122211 222344444 47652 2
Q ss_pred ---------CCC-CcccHHHHHHHHhc---CccchhhhhhcCCCCCc-cccccCC--CceEEEEEe-eCC--------Ch
Q 004392 630 ---------TGY-KLNGSAYVISKHIS---NVWLWDRVRVSGGAYGG-FCDFDSH--SGVFSFLSY-RDP--------NL 684 (756)
Q Consensus 630 ---------~~~-~d~~al~vl~~iLg---~s~L~~~iRekglaYg~-~~~~~~~--~g~~~~~~~-~~~--------~~ 684 (756)
..+ +++.++.||+.+|| +|+|+++||++|+||++ ++.++.. .|.|.+.+. ..+ +.
T Consensus 386 ~~~~~~~~~~~d~~~~~AL~VLs~lLggg~sS~L~q~LrE~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~ 465 (1119)
T PTZ00432 386 NGSKDYDKSLIDPVDYLALLVLNYLLLGTPESVLYKALIDSGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVH 465 (1119)
T ss_pred ccccccccccCCHHHHHHHHHHHHHHcCCCccHHHHHHHhcCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhH
Confidence 133 57899999999998 79999999999999995 4444433 455544443 221 13
Q ss_pred hhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCC---Ch--hHHHHHHHHHHHhCCCHHH
Q 004392 685 LKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQ---LP--DAKGYSSLLRHLLGITEEE 744 (756)
Q Consensus 685 ~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~---~~--~~~~~~~~~~~~~g~~~~~ 744 (756)
.++.+++.++++.+++.+|++++|++|+..+.-++.... .| ...+......+++|.++.+
T Consensus 466 ~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~ 530 (1119)
T PTZ00432 466 YTFEKVVLNALTKVVTEGFNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFE 530 (1119)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHH
Confidence 467888888888889999999999999999877665321 13 3334455556667666666
No 17
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-24 Score=211.66 Aligned_cols=174 Identities=20% Similarity=0.302 Sum_probs=163.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
+.++.|+++|...-.|++||||.|+|+.|.+++.++++.++ +..|+...|.|++|.+.|.+ ++.+++++.++.+++|
T Consensus 50 lyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~L--E~~GGn~~cqsSRetm~Yaa-s~~~~~v~sm~~lLad 126 (472)
T KOG2067|consen 50 LYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAEL--EKLGGNCDCQSSRETMMYAA-SADSDGVDSMVELLAD 126 (472)
T ss_pred EEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHH--HHhCCcccccccHhhhHHHH-HhhhcccHHHHHHHHH
Confidence 46889999999999999999999999999999999877776 78899999999999999995 6688999999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
.+.+|.|.+++ +..+ |..|.-|+...-..|.-++.+.++.++|.+.+.+.+..+..+.|..|+
T Consensus 127 tV~~P~~~d~e--v~~~---------------~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~ 189 (472)
T KOG2067|consen 127 TVLNPKFTDQE--VEEA---------------RRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKIN 189 (472)
T ss_pred HHhcccccHHH--HHHH---------------HHhhhheccccccCchhhHHHHHHHHHhccCcccccccCChhhhhhhh
Confidence 99999999999 7655 888888988777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhh
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS 204 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~ 204 (756)
.+.|..|-+.+|+|+||++..+| |+++++++.++
T Consensus 190 ~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~ 223 (472)
T KOG2067|consen 190 REVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAE 223 (472)
T ss_pred HHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHH
Confidence 99999999999999999999999 99999999997
No 18
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.4e-23 Score=202.30 Aligned_cols=331 Identities=13% Similarity=0.060 Sum_probs=227.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccCh-HHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLI-PLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~-~~~~~~-~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|...+.+. ++..+.++++.|+.-+ ....++ +++..+-+ ..|.+++..++...+|.+||...++++
T Consensus 29 tL~NGlkvase~~pg-~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF-~ST~~~~~~ei~~~LE~~GGn~~cqsS---- 102 (472)
T KOG2067|consen 29 TLPNGLKVASENTPG-QFCTVGLYIDSGSRYEAKYFSGISHFLERLAF-KSTERFSSKEILAELEKLGGNCDCQSS---- 102 (472)
T ss_pred ecCCccEEeccCCCC-CceEEEEEEecCccccCcCcccHHHHHHHHhh-ccccCCcHHHHHHHHHHhCCccccccc----
Confidence 578999998776664 4999999999998755 333444 55555555 599999999999999999999999987
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
++.+.|.+++.+++++.+++||+|.+.+|.|.| +.+.......+-++++-... +..+..+..-+..+.+..+
T Consensus 103 ------Retm~Yaas~~~~~v~sm~~lLadtV~~P~~~d-~ev~~~~~~v~~E~~el~~~-Pe~lL~e~iH~Aay~~ntl 174 (472)
T KOG2067|consen 103 ------RETMMYAASADSDGVDSMVELLADTVLNPKFTD-QEVEEARRAVKYEIEELWMR-PEPLLTEMIHSAAYSGNTL 174 (472)
T ss_pred ------HhhhHHHHHhhhcccHHHHHHHHHHHhcccccH-HHHHHHHHhhhheccccccC-chhhHHHHHHHHHhccCcc
Confidence 899999999999999999999999999999997 43333333222233222222 2333333322222221111
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
|.+-+.-.+.+.+ ...+.|..|.+++|.|++|++..+|=- + +.+++.++++|+.||....++....
T Consensus 175 -----g~pl~cp~~~i~~-------I~~~~l~~yl~~~ytp~rmVlA~vGV~-h-eelv~~~~~~~~~~~s~~~p~i~~~ 240 (472)
T KOG2067|consen 175 -----GLPLLCPEENIDK-------INREVLEEYLKYFYTPERMVLAGVGVE-H-EELVEIAEKLLGDLPSTKVPPIDES 240 (472)
T ss_pred -----cccccCChhhhhh-------hhHHHHHHHHHhcCChhheEeeecCCC-H-HHHHHHHHHHhccCCccCCCCcccc
Confidence 1111111122211 124779999999999999999999865 3 6799999999999987533211111
Q ss_pred cccCCCCceEEEeC-------CCeeEEEeecccccCCCCcccHHHHHHHHhc--------------Cccchhhhhhc-CC
Q 004392 602 KAHLPSANEAIVIP-------TQVNYVGKAANIFETGYKLNGSAYVISKHIS--------------NVWLWDRVRVS-GG 659 (756)
Q Consensus 602 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg--------------~s~L~~~iRek-gl 659 (756)
.....++...+..+ ...+|+++|+.++++.++|..++.||+.++| .|||+.+|=-+ .+
T Consensus 241 ~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~w 320 (472)
T KOG2067|consen 241 KAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHW 320 (472)
T ss_pred hhhccccccccCCCCccccCccceeeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHH
Confidence 11111111111111 1356899999999999999999999999998 36999988776 69
Q ss_pred CCCccccccC--CCceEEEEEeeCCCh-hhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCC
Q 004392 660 AYGGFCDFDS--HSGVFSFLSYRDPNL-LKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQ 723 (756)
Q Consensus 660 aYg~~~~~~~--~~g~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~ 723 (756)
.|++-++... +.|+|.++..++|.. ..+++++.+.+-.+. ++++++||+|||.++.+.+.+..
T Consensus 321 v~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~-~~v~~~el~RAK~qlkS~LlMNL 386 (472)
T KOG2067|consen 321 VYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMA-GGVTQEELERAKTQLKSMLLMNL 386 (472)
T ss_pred HHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcc
Confidence 9998776554 467777766666643 344444433333333 45999999999999999997754
No 19
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.80 E-value=3.3e-20 Score=171.93 Aligned_cols=133 Identities=29% Similarity=0.443 Sum_probs=120.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
.++|++|++.|++++.|+||+++||+++||++++..+ +.+.+ +.+|+.+|+.|+.|+|.|.+ ++++++++.+|++++
T Consensus 16 ~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~-l~~~l-~~~G~~~~~~t~~d~t~~~~-~~~~~~~~~~l~~l~ 92 (149)
T PF00675_consen 16 SLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDE-LQEEL-ESLGASFNASTSRDSTSYSA-SVLSEDLEKALELLA 92 (149)
T ss_dssp EEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHH-HHHHH-HHTTCEEEEEEESSEEEEEE-EEEGGGHHHHHHHHH
T ss_pred EEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhh-hHHHh-hhhccccceEecccceEEEE-EEecccchhHHHHHH
Confidence 4579999999999999999999999999999999855 45555 66799999999999999997 457899999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGD 161 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~ 161 (756)
+++.+|.|++++ |+++ |..+..|++...++|..++.+.+++.+|.+|||++++.|+
T Consensus 93 ~~~~~P~f~~~~--~~~~---------------r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 93 DMLFNPSFDEEE--FERE---------------REQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp HHHHSBGGCHHH--HHHH---------------HHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HHHhCCCCCHHH--HHHH---------------HHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 999999999999 8876 9999999999999999999999999999999999999886
No 20
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.71 E-value=1.1e-16 Score=154.29 Aligned_cols=166 Identities=19% Similarity=0.189 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCC---Cccccccccc--CCCCceEEEe--CCCeeEE
Q 004392 549 SSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNS---PVERVKWKAH--LPSANEAIVI--PTQVNYV 621 (756)
Q Consensus 549 ~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~--~~~~~~~~~~--~~~~~~~ 621 (756)
.++|++||+++|.|+|++++|+||++ .+++.+.++++|+.|+... .........+ .......+.. +.+...+
T Consensus 4 ~e~l~~f~~~~y~p~n~~l~i~Gd~~-~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 82 (184)
T PF05193_consen 4 LEDLRAFYKKFYRPSNMTLVIVGDID-PDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQSIV 82 (184)
T ss_dssp HHHHHHHHHHHSSGGGEEEEEEESSG-HHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSEEE
T ss_pred HHHHHHHHHHhcCccceEEEEEcCcc-HHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 57899999999999999999999997 6789999999999998653 1111111111 1112222222 2357788
Q ss_pred EeecccccC-CCCcccHHHHHHHHhc---Cccchhhhhhc-CCCCCccccccC--CCceEEEEEeeCC-ChhhHHHHHHh
Q 004392 622 GKAANIFET-GYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDS--HSGVFSFLSYRDP-NLLKTLDIYDG 693 (756)
Q Consensus 622 ~~~~~~~~~-~~~d~~al~vl~~iLg---~s~L~~~iRek-glaYg~~~~~~~--~~g~~~~~~~~~~-~~~~~~~~~~~ 693 (756)
.+++++++. ++++..++.+++.+|+ +|+|+.++|++ |++|++++++.. ..|.+.+++...| +..++++.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 162 (184)
T PF05193_consen 83 SIAFPGPPIKDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPENLDEAIEAILQ 162 (184)
T ss_dssp EEEEEEEETGTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcccHHHHHHHHHH
Confidence 899998887 8999999999999999 56999999975 999999998764 3477777776666 46788888888
Q ss_pred HHHHHhcCCCCHHHHHHHHHHH
Q 004392 694 TVDFLRELEMDDDTLTKAIIGT 715 (756)
Q Consensus 694 ~~~~l~~~~it~~eL~~ak~~~ 715 (756)
.++.+++.++|++||+++|..+
T Consensus 163 ~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 163 ELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHhcC
Confidence 9999988899999999999865
No 21
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.2e-15 Score=164.27 Aligned_cols=327 Identities=13% Similarity=0.084 Sum_probs=224.7
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChH-HHHHHhhhcCCCCCCH-HHHHHHHhhcccceEEeeeecc
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIP-LFCQSLKEMGTKDLSF-VQLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~-~~~~~~~-l~~~~l~~~Gt~~~~~-~el~~~i~~~~g~~~~~~~~~~ 440 (756)
..+||+++++...|...-....+.+.+|+..+ ++.++++ +++||++ +|+++|+. ..+...+..+||+-||+|.
T Consensus 28 ~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlf-mGseKYP~~~~f~~fLskhgGs~NA~T~--- 103 (937)
T COG1025 28 KLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLF-MGSEKYPDEGGFSEFLSKHGGSHNASTA--- 103 (937)
T ss_pred ECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHH-hcCccCCCccchHHHHHHcCCccccccC---
Confidence 47899999999999887888888889998743 5555555 5556666 79999954 6899999999999999997
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+.+.|...+..+.++.+++-+++++.+|-|+. +-..+.+...-++....+.+.+. ...+.......++|+
T Consensus 104 -------~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~-e~~dRE~~AV~sE~~~~~~~D~~-R~~~~~~~~~np~HP 174 (937)
T COG1025 104 -------GERTAFYFEVENDALEGALDRFADFFIEPLFNK-EALDRERNAVNSEFTMNLTSDGW-RMYQVQALTANPGHP 174 (937)
T ss_pred -------CCceeEEEEecHHHHHHHHHHHHHHHhccccCh-HHHHHHHHHHHHHHhcCcCchHH-HHHHHHHhhcCCCCC
Confidence 578899999999999999999999999999986 43433333444444444444433 333444556678888
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
++. .+.+.+++|.+.- -..+.+.|+.||+++|+++||.++|-|.-. ++++.+++.++||.+|......+..
T Consensus 175 ~sr--Fs~GN~~TL~~~p------~~~v~~el~ef~~~~YSa~~M~lviyg~q~-ldeL~~~a~~~F~~Ipn~~~~~p~~ 245 (937)
T COG1025 175 LSK--FSTGNLETLSDKP------GLVVQQELKEFHEKHYSANNMKLVIYGNQP-LDELAKLAADLFGDIPNRARKIPPI 245 (937)
T ss_pred ccc--cCCCChhhhccCC------CchHHHHHHHHHHHhcChhheEEEEecCCC-HHHHHHHHHHHhCcCCCCCCCCCCC
Confidence 755 2334455554421 013568999999999999999999999995 8999999999999998665432211
Q ss_pred cccc---CCCCceEEEeCC-CeeEEEeecccccCCCCc-ccHHHHHHHHhc---CccchhhhhhcCCCCCccccccCC--
Q 004392 601 WKAH---LPSANEAIVIPT-QVNYVGKAANIFETGYKL-NGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDSH-- 670 (756)
Q Consensus 601 ~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d-~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~~~-- 670 (756)
..++ ....+.....|. +...+.+.|+.++...+. .-....+++++| .+=|-.-|-++||+=++++...+.
T Consensus 246 p~p~~~d~~t~~ii~i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~es~gsL~~~Lk~~Glit~l~a~~~~~~~ 325 (937)
T COG1025 246 PVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNESPGSLLAWLKKQGLITELSAGLDPISG 325 (937)
T ss_pred CCCCCChHHhCceEEeccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccCCCchHHHHHHhccchhhhccccccccC
Confidence 1111 111222223343 344566777776655444 557788889999 234447788899998888776643
Q ss_pred -CceEEEEEe-eCC---ChhhHHHHHHhHHHHHhcCCCCHHHHHHHH
Q 004392 671 -SGVFSFLSY-RDP---NLLKTLDIYDGTVDFLRELEMDDDTLTKAI 712 (756)
Q Consensus 671 -~g~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~it~~eL~~ak 712 (756)
.|.|.++.. ++. +..+++..+-+-++.+++.++....++.-.
T Consensus 326 n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq 372 (937)
T COG1025 326 NYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQ 372 (937)
T ss_pred CcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHH
Confidence 454544432 222 334555555555555677777776666543
No 22
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=8.6e-15 Score=165.64 Aligned_cols=313 Identities=12% Similarity=0.061 Sum_probs=219.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCC-cccccChH-HHHHHhhhcCCCCCCH-HHHHHHHhhcccceEEeeeecc
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLK-QELLPLIP-LFCQSLKEMGTKDLSF-VQLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~-~~~~~~~~-l~~~~l~~~Gt~~~~~-~el~~~i~~~~g~~~~~~~~~~ 440 (756)
++.||+++++...|+.+.....+-+..|++. +.+.++++ ++.||++ .||++|+. .++...+..+||+-||+|.
T Consensus 32 ~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlF-mGS~KYP~En~y~~~lsk~gGssNA~T~--- 107 (974)
T KOG0959|consen 32 ELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLF-MGSEKYPDENEYSKFLSKNGGSSNAYTD--- 107 (974)
T ss_pred EecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHh-hccccCCCcchhHHHHHhcCCccccccc---
Confidence 4789999999988877777888888999874 35555555 5556666 79999975 5788888889999999997
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+.+.|+..+..++++.+|+.+++++.+|.|.. +...+.+...-.+...+.... ........+++..++|+
T Consensus 108 -------~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~-~a~eREv~AVdSE~~~nl~~D-~wr~~ql~~~l~~~~hp 178 (974)
T KOG0959|consen 108 -------SEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNK-SATEREVGAVDSEHEKNLNSD-GWRFDQLLRSLSNPGHP 178 (974)
T ss_pred -------cccceEEEecchHHHHHHHHHHHHHhhCcccCh-HHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHhcCCCCc
Confidence 578889999999999999999999999999985 555544444445555544433 23444455666778888
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
+.. -+++..+.|....+ .. .+.+.|.+||+++|.+++|+++|+|..+ ++.+..++.+.|+.++...... +.
T Consensus 179 ~~k--F~tGN~~tL~~~p~----~~-~~r~~L~kF~k~~Yssn~M~l~i~G~es-lD~Le~lv~~~F~~i~N~~~~~-p~ 249 (974)
T KOG0959|consen 179 YSK--FSTGNKKTLLEGPR----EI-DLRDELLKFYKNWYSSNIMTLVIVGKES-LDVLESLVTRLFDEISNKKKPR-PV 249 (974)
T ss_pred chh--ccccchhhhhhccc----cc-hHHHHHHHHHHhhcccccceEEEEcCCC-hhHHHHHHHHHcccccccCCCC-Cc
Confidence 755 34445566655422 11 5788999999999999999999999985 7888888999998887654432 22
Q ss_pred cccc-C-C--CCceEEEeCCC-eeEEEeecccccCCC-CcccHHHHHHHHhc---CccchhhhhhcCCCCCccccccC--
Q 004392 601 WKAH-L-P--SANEAIVIPTQ-VNYVGKAANIFETGY-KLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDS-- 669 (756)
Q Consensus 601 ~~~~-~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~~-- 669 (756)
+..+ . + .++.....|.. ...+.+.|+.|+..+ -+.-....+.+++| .+-|...||-+|||=+..+....
T Consensus 250 f~~~p~~~e~~~~~~~v~pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigheg~GSL~~~Lk~~gw~~sl~a~~~~~a 329 (974)
T KOG0959|consen 250 FPEPPFLPEELKKLVRVVPIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGHEGPGSLLSYLKRLGWATSLEAGIPEFA 329 (974)
T ss_pred ccCCCCChHHhCcEEEEEeccccceEEEEEecCCcccccccCcHHHHHHHhccCCcchHHHHHHHhhchheeecCCCccc
Confidence 2211 1 1 12333444543 456667788776433 34557888888998 45667899999998777666542
Q ss_pred -CCceEEEEEee-CCChhhHHHHHHhHHHHH
Q 004392 670 -HSGVFSFLSYR-DPNLLKTLDIYDGTVDFL 698 (756)
Q Consensus 670 -~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l 698 (756)
..+.+.+++.- +...+...+++..+.+++
T Consensus 330 s~~~~f~v~idLtd~G~e~~~~ii~~~f~yi 360 (974)
T KOG0959|consen 330 SGYSFFNVSIDLTDEGLEHVDEIIGLVFNYI 360 (974)
T ss_pred cccceEEEEEEeccccchhHHHHHHHHHHHH
Confidence 23444444442 334556666666666665
No 23
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.61 E-value=7.5e-15 Score=146.21 Aligned_cols=175 Identities=17% Similarity=0.130 Sum_probs=152.7
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
-+.|++|||+|+.++.|++|+|....++-|+.++...+.++. +..|+.++.++++|+..|.+ ++..++++-.|.+|.
T Consensus 47 ~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~s--e~~GG~Lss~~tRe~~~~tv-t~lrd~~~~~l~~L~ 123 (429)
T KOG2583|consen 47 SLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRES--EQLGGTLSSTATRELIGLTV-TFLRDDLEYYLSLLG 123 (429)
T ss_pred EEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhh--HhhCceeeeeeecceEEEEE-EEecccHHHHHHHHH
Confidence 357999999999999999999999999999999999987777 78899999999999999996 567899999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
|++..|.|.++| ++... -..+..++. ..+|..++.+.+++..|.+ .++++..-.--.|.++
T Consensus 124 ~V~~~paFkPwE--l~D~~--------------~~ti~~~l~--~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~v 184 (429)
T KOG2583|consen 124 DVLDAPAFKPWE--LEDVV--------------LATIDADLA--YQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGSV 184 (429)
T ss_pred HhhcccCcCchh--hhhhh--------------hhhhHHHhh--hcChHHHHHHHHHHHHHhc-ccCCcccCCcccccCc
Confidence 999999999998 54320 033444433 4689999999999999987 7888776666679999
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhc
Q 004392 169 TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEA 206 (756)
Q Consensus 169 t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~ 206 (756)
+.++|++|-+++|...|++++-+| +|++.+..+.++.
T Consensus 185 ss~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~ 221 (429)
T KOG2583|consen 185 SSSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEY 221 (429)
T ss_pred cHHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHh
Confidence 999999999999999999999999 9999999999743
No 24
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.48 E-value=5e-12 Score=141.44 Aligned_cols=357 Identities=12% Similarity=0.049 Sum_probs=233.6
Q ss_pred CCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHH-HHHHhhcccc-eEEeeeeccCCCC
Q 004392 367 NGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQL-DQLIGRKTGG-ISVYPFTSSIHGK 444 (756)
Q Consensus 367 nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el-~~~i~~~~g~-~~~~~~~~~~~~~ 444 (756)
.|+.+.....++. -..+.+.|.+ .|.+..+..|.++|+.+ +|+++|+..+. -..+.+-... +||.|+
T Consensus 29 TGa~l~hi~~~d~-~~vFsi~F~T--~p~dstGVaHiLEHtvl-cGS~kYPvkdPF~~ml~rSLntF~NA~T~------- 97 (978)
T COG1026 29 TGAELAHIKNEDP-NNVFSIAFKT--EPHDSTGVAHILEHTVL-CGSKKYPVKDPFFKMLKRSLNTFLNAFTF------- 97 (978)
T ss_pred CCceEEEecCCCc-CceEEEEeec--CCCCCCCcchHHHHHhh-hCCCCCCCCChHHHHHHHhHHHHHhhccC-------
Confidence 6888877665533 3346777765 45566678888899777 79999988764 3333333333 788886
Q ss_pred CCCceEEEEEEEec-cccHHHHHHHHHHHHhcCCCCcHHHHHHHHH-------------HHHHHHhhhhccCcHHHHHHH
Q 004392 445 EDPCCCMVVRGKAM-AGQAEDLFNLFNCVLQEVQLTDQQRFKQFVS-------------QSKARMENRLRGSGHGIAAAR 510 (756)
Q Consensus 445 ~~~~~~~~~~~~~l-~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~a~~~ 510 (756)
.|++.|-+++. .+++-..+....|.+++|.+.++....+.-. -..++|+.... +++.+.++.
T Consensus 98 ---~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~s-s~~~~~~~~ 173 (978)
T COG1026 98 ---PDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYS-SGESVLSRA 173 (978)
T ss_pred ---CCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhccccc-CchhHHHHH
Confidence 57777776655 4799999999999999999886332111100 00122332222 467888888
Q ss_pred HHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHH-Hhc
Q 004392 511 MDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKF-LDM 589 (756)
Q Consensus 511 ~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~-~~~ 589 (756)
+.+.++|+..|....+|.+ +++. +.+.+++++||+++|+|+|+-+++.||++ .++..+.++++ +..
T Consensus 174 ~~~slfp~~ty~~~SGG~P-----~~I~-------~LtyE~~r~FHkk~Y~pSN~~i~~yGni~-~~~~L~~iee~~l~~ 240 (978)
T COG1026 174 MQQSLFPGTTYGVNSGGDP-----KNIP-------DLTYEEFRAFHKKHYHPSNCKIFVYGNIP-TERLLDFIEEKVLRP 240 (978)
T ss_pred HHHhhCCCccccccCCCCc-----cccc-------ccCHHHHHHHHHHhCCccceEEEEECCCC-HHHHHHHHHHhhhcc
Confidence 8888888877766666664 2221 22458999999999999999999999996 67888888876 555
Q ss_pred CCCCCCccccccccc--CCCC-ceEEEe-----CCCeeEEEeecccccCCC-CcccHHHHHHHHhc---Cccchhhhhhc
Q 004392 590 LPTNSPVERVKWKAH--LPSA-NEAIVI-----PTQVNYVGKAANIFETGY-KLNGSAYVISKHIS---NVWLWDRVRVS 657 (756)
Q Consensus 590 l~~~~~~~~~~~~~~--~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~-~d~~al~vl~~iLg---~s~L~~~iRek 657 (756)
.++.....+.++... .+.. .....+ +..+..++++|.+++..| .+..++.||..||- .|+|.+.|=|.
T Consensus 241 ~~k~~~~~~i~~~~~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~~iLl~~~asPl~~~lies 320 (978)
T COG1026 241 FGKRELDVPIPDQKAFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLEEILLDSAASPLTQALIES 320 (978)
T ss_pred ccccccCCCCCcccccCcccccceeeccCCCCCCCceeEEEEEEecCCcccHHHHHHHHHHHHHHccCcccHHHHHHHHc
Confidence 544432212222111 1111 111222 223678889998877666 57889999999996 68999999998
Q ss_pred CCC-CCccccccCC--CceEEEEEeeCC--ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhccc-CCCh--hHHH
Q 004392 658 GGA-YGGFCDFDSH--SGVFSFLSYRDP--NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLP--DAKG 729 (756)
Q Consensus 658 gla-Yg~~~~~~~~--~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~--~~~~ 729 (756)
|+. +.++..++.. ...|.+..---+ ..++..+++..+++.+.+.++..+.++.++..+.-++.. ...| ...+
T Consensus 321 glg~~~~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~gi~~~~ie~~~~q~E~s~ke~~s~pfgl~l~ 400 (978)
T COG1026 321 GLGFADVSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKEVKSYPFGLGLM 400 (978)
T ss_pred CCCcccccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhcCCCccHHHH
Confidence 866 5444445443 344433322222 345677778888888888889999999999888766654 3333 3334
Q ss_pred HHHHHHHHhCCCHHHHHHHHHH
Q 004392 730 YSSLLRHLLGITEEERQRRREE 751 (756)
Q Consensus 730 ~~~~~~~~~g~~~~~~~~~~~~ 751 (756)
.+.+..++.|.++..-.++...
T Consensus 401 ~~~~~gw~~G~dp~~~Lr~~~~ 422 (978)
T COG1026 401 FRSLYGWLNGGDPEDSLRFLDY 422 (978)
T ss_pred HHhccccccCCChhhhhhhHHH
Confidence 4555555667666554444433
No 25
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.47 E-value=1.1e-10 Score=116.76 Aligned_cols=357 Identities=12% Similarity=0.068 Sum_probs=215.9
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH 442 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~-~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~ 442 (756)
.+.||++|--.+.++. +..+.+.|++|+.-+ ...++++++.+......|.+++.-.|.+.++..||.++....
T Consensus 27 kl~ngL~Vas~e~~~~-is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~t----- 100 (429)
T KOG2583|consen 27 KLVNGLTVASREAPTA-ISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTAT----- 100 (429)
T ss_pred ccccceEEEeccCCCc-ceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeee-----
Confidence 4679999988876654 889999999998644 334455444444444689999999999999999999998887
Q ss_pred CCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHH
Q 004392 443 GKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWIS 522 (756)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 522 (756)
++.+.+.++|+.++++-.+.+|.+++..|.|.+.|-...+...+..++.. ..+...+.+..-+..+.
T Consensus 101 -----Re~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~~---~t~~~~a~e~lH~aAfR----- 167 (429)
T KOG2583|consen 101 -----RELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLAY---QTPYTIAIEQLHAAAFR----- 167 (429)
T ss_pred -----cceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhhh---cChHHHHHHHHHHHHHh-----
Confidence 89999999999999999999999999999999755333332333333322 23444454443332221
Q ss_pred HHhccchHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 523 EQMGGVSYLEFLQALEEKVDQDW-AGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 523 ~~~~g~~~~~~l~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
+|++.--+.... .. .-..++|..|-.++|..+|+.++-+|=.. +.++...++++...+..+. .+.
T Consensus 168 ---ngLgnslY~p~~------~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~--~~L~~~~~~~~~~~~~~~~---k~a 233 (429)
T KOG2583|consen 168 ---NGLGNSLYSPGY------QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDH--DDLKQFADEYAPIRDGLPL---KPA 233 (429)
T ss_pred ---cccCCcccCCcc------cccCccHHHHHHHHHHHhhccceEEEecCCCh--HHHHHHHHHhccccCCCCC---CCC
Confidence 122211000000 00 01246799999999999999877766553 5688888877321111111 111
Q ss_pred cccCCCCceEEEeCCCeeEEEeeccccc-CCCCcccHHHHHHHHhcCcc-------chhhhhhcCCCCCccccc--cC--
Q 004392 602 KAHLPSANEAIVIPTQVNYVGKAANIFE-TGYKLNGSAYVISKHISNVW-------LWDRVRVSGGAYGGFCDF--DS-- 669 (756)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~al~vl~~iLg~s~-------L~~~iRekglaYg~~~~~--~~-- 669 (756)
+.....+..+......-.|+..+..+.. -+.+...+..|+.++||++. +.-++-.+-+-|++.++. .+
T Consensus 234 ~a~~~gGe~Rk~~~g~~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ys 313 (429)
T KOG2583|consen 234 PAKYSGGEARKDARGNRVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYS 313 (429)
T ss_pred CccccCCccccccCCceeEEEEecCcccccchHHHHHHHHHHHHHhcccccccccchHHHHHhhccccCceeeeeccccc
Confidence 1111122222112233456655554433 34678889999999999322 222222222335555432 22
Q ss_pred CCceEEEEEee-CCChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCCC------hhHH----HHHHHHHHHh
Q 004392 670 HSGVFSFLSYR-DPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQL------PDAK----GYSSLLRHLL 738 (756)
Q Consensus 670 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~~------~~~~----~~~~~~~~~~ 738 (756)
+.|++.+++.. +++..++....-..+.-....+++-.....++..+......... +... ....+...+.
T Consensus 314 DsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a~~~~~~~~a~~~~~~d~~i~~id 393 (429)
T KOG2583|consen 314 DSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEALELATGSQANLVSEPDAFIQQID 393 (429)
T ss_pred CCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHHHHHhhHHHhcCCCChHHHHHHhc
Confidence 57777766443 34555544443333433445566666666666666655544332 2222 3456677788
Q ss_pred CCCHHHHHHHHHHHh
Q 004392 739 GITEEERQRRREEIL 753 (756)
Q Consensus 739 g~~~~~~~~~~~~i~ 753 (756)
+++..++++..+++.
T Consensus 394 ~Vt~sdV~~a~kk~~ 408 (429)
T KOG2583|consen 394 KVTASDVQKAAKKFL 408 (429)
T ss_pred cccHHHHHHHHHHhc
Confidence 888888888888765
No 26
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.43 E-value=1.5e-12 Score=120.58 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=114.1
Q ss_pred eEEEeecCCCcEEEEEEEeeCCCCCc-ccc-cChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCCCCCC
Q 004392 370 KVLQHDLFTNDVLYTEVVFDMSSLKQ-ELL-PLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDP 447 (756)
Q Consensus 370 ~v~~~~~~~~~~v~~~~~~~~~~l~~-~~~-~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~~~~~~ 447 (756)
+|++.+.+..+++.+.++|++|+..+ ... +..+++.++++ .||++++..++.+.++..|+.++++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~-~gs~~~~~~~l~~~l~~~G~~~~~~t~---------- 69 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLF-RGSKKYSSDELQEELESLGASFNASTS---------- 69 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTT-SBBSSSBHHHHHHHHHHTTCEEEEEEE----------
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcc-cccchhhhhhhHHHhhhhccccceEec----------
Confidence 58888899999999999999998643 333 45556667666 599999999999999999999999998
Q ss_pred ceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhc
Q 004392 448 CCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMG 526 (756)
Q Consensus 448 ~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 526 (756)
.+++.|++++++++++++|+++++++.+|.|++ +.+.+.+.+....+..... ++..++...+.+..+.+++|+.+..
T Consensus 70 ~d~t~~~~~~~~~~~~~~l~~l~~~~~~P~f~~-~~~~~~r~~~~~ei~~~~~-~~~~~~~~~l~~~~f~~~p~~~~~~ 146 (149)
T PF00675_consen 70 RDSTSYSASVLSEDLEKALELLADMLFNPSFDE-EEFEREREQILQEIEEIKE-NPQELAFEKLHSAAFRGHPYGNPLL 146 (149)
T ss_dssp SSEEEEEEEEEGGGHHHHHHHHHHHHHSBGGCH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSGGGSHSS
T ss_pred ccceEEEEEEecccchhHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHhccCCCCCCCC
Confidence 799999999999999999999999999999996 5555555555555554433 3466777777777777777655443
No 27
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.2e-09 Score=109.42 Aligned_cols=351 Identities=12% Similarity=0.071 Sum_probs=211.6
Q ss_pred CCceEEEeecC-CCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHH-HHHHHhhccc-ceEEeeeeccCCC
Q 004392 367 NGVKVLQHDLF-TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQ-LDQLIGRKTG-GISVYPFTSSIHG 443 (756)
Q Consensus 367 nG~~v~~~~~~-~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~e-l~~~i~~~~g-~~~~~~~~~~~~~ 443 (756)
-|+.++...+. +|.+ +.+.|.+. |++..+.-|++.|..+ +|+.+|+-.+ +-+.+.+-.. .+|++|.
T Consensus 61 Tgae~lhl~reD~N~v--FsI~FrTp--p~dstGiPHILEHtvL-CGS~KYPvrdPFfkmLnrSLatFmNAfT~------ 129 (998)
T KOG2019|consen 61 TGAEVLHLDREDENNV--FSIVFRTP--PKDSTGIPHILEHTVL-CGSRKYPVRDPFFKMLNRSLATFMNAFTA------ 129 (998)
T ss_pred CCceeEeeccCCCCce--eEEEeecC--CCccCCCchhhhhhee-eccCcCcccChHHHHHHHHHHHHHhhccC------
Confidence 47777766543 4544 46677653 3344455667777666 8999997654 4444443222 4778876
Q ss_pred CCCCceEEEEEEE-eccccHHHHHHHHHHHHhcCCCCcHH------H--------------HH-HHHHHHHHHHhhhhcc
Q 004392 444 KEDPCCCMVVRGK-AMAGQAEDLFNLFNCVLQEVQLTDQQ------R--------------FK-QFVSQSKARMENRLRG 501 (756)
Q Consensus 444 ~~~~~~~~~~~~~-~l~~~l~~~l~ll~~~l~~p~f~~~~------~--------------~~-~~~~~~~~~~~~~~~~ 501 (756)
.+++.|-.. +-+.++....++.-|..+.|.+...+ | ++ .|..+++..+ .+
T Consensus 130 ----pD~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~----S~ 201 (998)
T KOG2019|consen 130 ----PDYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQY----SD 201 (998)
T ss_pred ----CCcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccc----cC
Confidence 566555544 44577777777777777766554211 0 11 2223333333 22
Q ss_pred CcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHH
Q 004392 502 SGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSER 581 (756)
Q Consensus 502 ~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~ 581 (756)
+..+....+...+++++.|+-..+|-+ ..+ .+...++|++||+++|+|.|+.+..-||+. .++..+
T Consensus 202 -~~~if~~~~Qq~L~p~~tYgv~SGGDP-----l~I-------pdLt~eelk~FHr~~YHPSNAri~tYGn~P-l~~~l~ 267 (998)
T KOG2019|consen 202 -PDYIFGMLFQQALFPENTYGVNSGGDP-----LDI-------PDLTYEELKEFHRQHYHPSNARIFTYGNFP-LEDLLK 267 (998)
T ss_pred -hhHHHHHHHHHhhCccccccccCCCCc-----ccC-------ccccHHHHHHHHHhccCCCcceeEeecCch-HHHHHH
Confidence 345566666667777666544444432 111 123458899999999999999999999995 778888
Q ss_pred HHHHHHhcCCCCCCcccccccccCCCCceEEE--------eCCCeeEEEeecccccCCC-CcccHHHHHHHHhc---Ccc
Q 004392 582 FVGKFLDMLPTNSPVERVKWKAHLPSANEAIV--------IPTQVNYVGKAANIFETGY-KLNGSAYVISKHIS---NVW 649 (756)
Q Consensus 582 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~-~d~~al~vl~~iLg---~s~ 649 (756)
+++.-|....+.+...+..+........+++. .|..+.-+++.|...+..| -+..+|.||.+++- +|.
T Consensus 268 ~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp 347 (998)
T KOG2019|consen 268 QLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSP 347 (998)
T ss_pred HHHHhhcccccccccCccccccccccCceeeeecCCCCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccH
Confidence 88776665544433222222111111111111 1233455666665444333 46789999999985 899
Q ss_pred chhhhhhcCC--CCCccccccCCCceEEEEEee----CCChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCC
Q 004392 650 LWDRVRVSGG--AYGGFCDFDSHSGVFSFLSYR----DPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQ 723 (756)
Q Consensus 650 L~~~iRekgl--aYg~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~ 723 (756)
+++.+=|.|+ -.++.+.++...-...|+++. +.+.++..+++..+++.|++.+|+.+-++.....+--++....
T Consensus 348 ~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qs 427 (998)
T KOG2019|consen 348 FYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQS 427 (998)
T ss_pred HHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhccc
Confidence 9999999863 588888888654334444443 2356777788888888999999999999887776655554333
Q ss_pred Ch--hHHHHHHHHHHHhCCCHHHHHHHHH
Q 004392 724 LP--DAKGYSSLLRHLLGITEEERQRRRE 750 (756)
Q Consensus 724 ~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 750 (756)
+- -+.+......++++.++-+...+-+
T Consensus 428 t~fGL~L~~~i~~~W~~d~DPfE~Lk~~~ 456 (998)
T KOG2019|consen 428 TGFGLSLMQSIISKWINDMDPFEPLKFEE 456 (998)
T ss_pred cchhHHHHHHHhhhhccCCCccchhhhhh
Confidence 22 2233334444556655544444333
No 28
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.2e-07 Score=99.00 Aligned_cols=344 Identities=11% Similarity=0.012 Sum_probs=195.9
Q ss_pred CCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhc-ccceEEeeeeccCCCCC
Q 004392 367 NGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRK-TGGISVYPFTSSIHGKE 445 (756)
Q Consensus 367 nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~-~g~~~~~~~~~~~~~~~ 445 (756)
-|++|...+.|+. .|.-.+.+.+.+. .+.+.-|-+.|+++ +|+++|+..-+-..+.+. .+..|+-|+
T Consensus 28 Tkl~va~~~~pts-~vhG~f~v~TEa~--~d~G~PHTLEHL~F-MGSKkYP~kGvLd~~anr~l~dtNAwTD-------- 95 (1022)
T KOG0961|consen 28 TKLRVAIGEVPTS-MVHGAFSVVTEAD--SDDGLPHTLEHLVF-MGSKKYPFKGVLDVIANRCLADTNAWTD-------- 95 (1022)
T ss_pred cceEEEEeecCCc-ceeeeEEeeeeec--CCCCCchhHHHHhh-hccccCCcccHHHHhhcchhcccccccc--------
Confidence 3677777777777 5554444444333 33455666778777 699999998887776664 445777776
Q ss_pred CCceEEEEEEEecc-ccHHHHHHHHHHHHhcCCCCcHHHHHHHHH---------HHHHHHhhhhccCcHHHHHHHHHhcc
Q 004392 446 DPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQLTDQQRFKQFVS---------QSKARMENRLRGSGHGIAAARMDAKL 515 (756)
Q Consensus 446 ~~~~~~~~~~~~l~-~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~~~ 515 (756)
.+++.+..++.. +.+-+.|-...+-+..|.+.++...-++-. -...++++. ...+..+..+..+...
T Consensus 96 --tD~T~YtLStag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~-es~~~~im~~~~~~~~ 172 (1022)
T KOG0961|consen 96 --TDHTAYTLSTAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDH-ESEMESIMDRKTKEVI 172 (1022)
T ss_pred --cCcceEEeecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhh-hcccchhhhhhhheee
Confidence 577777777554 678999999999999999987432222211 001111111 1123445555555555
Q ss_pred Ch-hhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCC
Q 004392 516 NT-AGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNS 594 (756)
Q Consensus 516 ~~-~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~ 594 (756)
+| ...|....+|.. ++|.+ .+.+.+++||+++|.++|+.+.|+|.++ .+++....+.+-..++...
T Consensus 173 yP~~sgY~~eTGG~~-----knLR~-------lt~ekIR~yHK~~Y~~sN~cviVcG~v~-~d~lL~~m~~~~neile~~ 239 (1022)
T KOG0961|consen 173 YPPFSGYAVETGGRL-----KNLRE-------LTLEKIRDYHKKFYHLSNMCVIVCGMVD-HDQLLEIMNNVENEILEHM 239 (1022)
T ss_pred cCCCCCceeccCCCh-----hhHHH-------hhHHHHHHHHHHhccccceEEEEecCcC-HHHHHHHHHHHHhhhhhcc
Confidence 44 344444455542 33321 2468999999999999999999999997 5788877776665554333
Q ss_pred CcccccccccC----------CCCceEEEeCC---CeeEEEeecccccCCC-CcccHHHHHHHHhcC---ccchhhhhhc
Q 004392 595 PVERVKWKAHL----------PSANEAIVIPT---QVNYVGKAANIFETGY-KLNGSAYVISKHISN---VWLWDRVRVS 657 (756)
Q Consensus 595 ~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~d~~al~vl~~iLg~---s~L~~~iRek 657 (756)
...+..|+.|. ......+..|. .+..+.++|.++++.| ....|+.||..+|++ +.+-+..-|-
T Consensus 240 s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyls~savapf~~~fVei 319 (1022)
T KOG0961|consen 240 STVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYLSNSAVAPFQKDFVEI 319 (1022)
T ss_pred ccCCCCCCCCcccccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHhccccccccccceEEe
Confidence 22122222211 11112222232 3456778898877666 456799999999994 3555555552
Q ss_pred --CCCCCccccccCC-CceEEEEEeeCCChhhHHHHHHhHHHHH-hcCCCCHHHHHHHHHHHHhhccc-CC--ChhHHHH
Q 004392 658 --GGAYGGFCDFDSH-SGVFSFLSYRDPNLLKTLDIYDGTVDFL-RELEMDDDTLTKAIIGTIGDVDA-YQ--LPDAKGY 730 (756)
Q Consensus 658 --glaYg~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~it~~eL~~ak~~~~~~~~~-~~--~~~~~~~ 730 (756)
-+|-++++..+-. ...+.+... ..-.++-..+-.+.++.+ .+..|+=+-+.......+-++.. -+ .++.-+.
T Consensus 320 eDP~assv~f~~~~~vrc~i~L~f~-gVP~EKi~~~~~k~l~~l~et~~iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms 398 (1022)
T KOG0961|consen 320 EDPLASSVSFHIAEGVRCDIRLNFA-GVPVEKIDECAPKFLDKLVETANIDMERMGYLIDQTILNYLVNLETNAPSDFMS 398 (1022)
T ss_pred cCccccceeeeeecccceeEEEeec-CCcHHHhhhhhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhhcCChHHHHH
Confidence 4776666555421 222222221 222344444555666666 34455443333333322222221 11 3444444
Q ss_pred HHHHHHHhC
Q 004392 731 SSLLRHLLG 739 (756)
Q Consensus 731 ~~~~~~~~g 739 (756)
.....+++|
T Consensus 399 ~ii~d~~yg 407 (1022)
T KOG0961|consen 399 HIIGDQLYG 407 (1022)
T ss_pred HHhhhhhcc
Confidence 444555555
No 29
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=98.87 E-value=6.6e-09 Score=99.75 Aligned_cols=155 Identities=20% Similarity=0.301 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccc---ccc-CCCCch----hhHHHH-------H
Q 004392 167 KLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSL---REN-NTGSFP----RGLSLM-------L 231 (756)
Q Consensus 167 ~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~---~~~-~~~~~~----~~~~~~-------~ 231 (756)
++|.++|++||++||+|+||+++++||++++++.++|+ ..++.++... ... .....+ .+..+. .
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIE-KYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQ 79 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHH-HHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSS
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHH-hhhhhhccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999999999999999999997 5555444321 000 000000 000000 0
Q ss_pred hhh-cccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHh-hc----------c--CCCeeEEEEecCccchhh
Q 004392 232 RSM-GKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKY-IL----------N--NPHCVTVEMQPDPEKASR 297 (756)
Q Consensus 232 ~~~-~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~-~~----------~--~~~~~~~~~~p~~~~~~~ 297 (756)
..+ -.|..... ........+..+.+.+.+..++.++..+.++. +. . +.+.+.+.+.|+ ...+.
T Consensus 80 ~~v~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~-~~~~~ 156 (184)
T PF05193_consen 80 SIVSIAFPGPPI--KDSKDYFALNLLSSLLGNGMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPE-NLDEA 156 (184)
T ss_dssp EEEEEEEEEEET--GTSTTHHHHHHHHHHHHCSTTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGG-GHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhcCccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcc-cHHHH
Confidence 000 01111100 11223456677888887665667888887442 11 0 123444555555 33333
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004392 298 DEAAEKEILAKVKSSMTKEDLAELARAT 325 (756)
Q Consensus 298 ~~~~~~e~l~~~~~~~t~~el~~~k~~~ 325 (756)
.....++..+....++|++|++++|+++
T Consensus 157 ~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 157 IEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp HHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4444444444456779999999999853
No 30
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=95.03 E-value=0.28 Score=51.66 Aligned_cols=187 Identities=14% Similarity=0.168 Sum_probs=91.4
Q ss_pred ccCCceEEEeecCCCcEEEEEEE-eeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCC
Q 004392 365 DINGVKVLQHDLFTNDVLYTEVV-FDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHG 443 (756)
Q Consensus 365 ~~nG~~v~~~~~~~~~~v~~~~~-~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~~ 443 (756)
++||++|.+.+.-..+ +|+.+. |+...--.+-++.+|+++|.|-.....+ + -.||+|+
T Consensus 4 L~NGVRiFin~~M~KD-IYlGIs~FGFe~DI~~iLGiAHLLEHILIsFD~~~-----F---------~ANASTa------ 62 (590)
T PF03410_consen 4 LSNGVRIFINPSMKKD-IYLGISNFGFENDIGEILGIAHLLEHILISFDSSK-----F---------LANASTA------ 62 (590)
T ss_pred ecCceEEEecCccccc-eEEeecccccccchHHHHhHHHHHHHHeeecchHH-----h---------hcccchh------
Confidence 6799999988655453 355443 2332211245677888888776533221 1 3466775
Q ss_pred CCCCceEEEEEEEecccc-HHHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHhhhhcc-CcHHHHHHHHHhccChhhH
Q 004392 444 KEDPCCCMVVRGKAMAGQ-AEDLFNLFN-CVLQEVQLTDQQRFKQFVSQSKARMENRLRG-SGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~-l~~~l~ll~-~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 520 (756)
+.|..+-+.++... ..++++-+- -.+.+-.+.+ ..-...++..+.++++...- +...-+++.+. .++.+.
T Consensus 63 ----RsYMSFWC~si~g~~~~DAvrtliSWFF~~g~Lk~-~F~~~~i~~hikELENEYYFRnEvfHCmDvLt-fL~gGD- 135 (590)
T PF03410_consen 63 ----RSYMSFWCKSIRGRTYIDAVRTLISWFFDNGKLKD-NFSRSKIKNHIKELENEYYFRNEVFHCMDVLT-FLGGGD- 135 (590)
T ss_pred ----hhhhhhhhhhccCCChhHHHHHHHHHhhcCCcccc-cccHhHHHHHHHHHhhhhhhhhhHHHHHHHHH-HhcCCc-
Confidence 66777766666644 445554443 3333444432 22223333444444442111 11112222221 222221
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCC
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSP 595 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~ 595 (756)
.++| +...-+.++ +.+...|.+--++...| |+ |+.+-..+ +.+..++++.||.||+.|.
T Consensus 136 ---LYNG-GRi~ML~~l--------~~i~~mL~~RM~~I~Gp-ni-VIFVk~l~--~~~l~lL~~TFGtLP~cP~ 194 (590)
T PF03410_consen 136 ---LYNG-GRIDMLNNL--------NDIRNMLSNRMHRIIGP-NI-VIFVKELN--PNILSLLSNTFGTLPSCPL 194 (590)
T ss_pred ---ccCC-chHHHHhhh--------HHHHHHHHHHHHhhcCC-cE-EEEEeccC--HHHHHHHHHhcCCCCCCcc
Confidence 1222 111222222 22333444433444443 44 45556664 3688999999999998775
No 31
>PHA03081 putative metalloprotease; Provisional
Probab=92.66 E-value=1.2 Score=47.07 Aligned_cols=187 Identities=13% Similarity=0.138 Sum_probs=89.6
Q ss_pred ccCCceEEEeecCCCcEEEEEEE-eeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCC
Q 004392 365 DINGVKVLQHDLFTNDVLYTEVV-FDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHG 443 (756)
Q Consensus 365 ~~nG~~v~~~~~~~~~~v~~~~~-~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~~ 443 (756)
+.||+++.+.+.-..+ +|+.+. |+...--.+-++.+|+++|.|-..... -+ -.|++|+
T Consensus 4 ~~ngvr~f~~~~m~kd-iy~gi~~fgfe~di~~~lg~ahllehili~fd~~-----~f---------~anast~------ 62 (595)
T PHA03081 4 LSNGVRIFINPSMKKD-IYLGISNFGFENDIGEILGIAHLLEHILISFDSS-----KF---------VANASTA------ 62 (595)
T ss_pred ecCceEEEecCccccc-eEEeecccccccchHHHHhHHHHHHHHeeecchH-----Hh---------cccchhh------
Confidence 5799999987655553 344442 222221124456778888876643221 11 2455554
Q ss_pred CCCCceEEEEEEEecc-ccHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHhhhhcc-CcHHHHHHHHHhccChhhH
Q 004392 444 KEDPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQ-LTDQQRFKQFVSQSKARMENRLRG-SGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 444 ~~~~~~~~~~~~~~l~-~~l~~~l~ll~~~l~~p~-f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 520 (756)
+.+..+-+.++. +.+.++++-+-..++++. +.+ ..-...++..+.++++...- +...-+++.+. .+..+.
T Consensus 63 ----r~ymsfwc~sirg~~y~DAvrtliSWFF~~~~Lr~-~F~~~~ik~~ikELENEYYFRnEvfHCmDvLT-fL~gGD- 135 (595)
T PHA03081 63 ----RSYMSFWCKSIRGRSYIDAIRTLISWFFDNGKLKD-NFSLSKIRNHIKELENEYYFRNEVFHCMDVLT-FLGGGD- 135 (595)
T ss_pred ----hhhHhHhhHhhcCCchHHHHHHHHHHhccCCcccc-ccchhhHHHHHHHHhhhhhhhhhhHHHHHHHH-HhcCCc-
Confidence 455555554444 234666666666555543 332 22223344444555443111 11112222221 222221
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCC
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSP 595 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~ 595 (756)
.++| +...-+.++ +.+.+.|.+--++...| |+ |+.+-..+ +.+..++.+.||.||+.|.
T Consensus 136 ---LYNG-GRi~ML~~l--------~~i~~~L~~RM~~I~Gp-ni-VIFVk~ln--~~~l~lL~~TFGtLP~~P~ 194 (595)
T PHA03081 136 ---LYNG-GRIDMLDNL--------NDVRDMLSNRMHRISGP-NI-VIFVKELN--PNTLSLLNNTFGTLPSCPE 194 (595)
T ss_pred ---ccCC-chHHHHhhh--------HHHHHHHHHHHHhhcCC-cE-EEEEeccC--HHHHHHHHHhcCCCCCCcc
Confidence 1222 111222222 22333343333334443 44 45556664 3688999999999998764
No 32
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=91.30 E-value=0.36 Score=50.84 Aligned_cols=158 Identities=18% Similarity=0.207 Sum_probs=87.8
Q ss_pred EEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHhhhhC
Q 004392 14 IVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFF 93 (756)
Q Consensus 14 ~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~ 93 (756)
.|+-.+-.+--|+||+|||++-. ++.. .. - .||+|++.+.+|-..+...+....++.-+..|+|.
T Consensus 27 FGFe~DI~~iLGiAHLLEHILIs----FD~~----~F-----~--ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF~ 91 (590)
T PF03410_consen 27 FGFENDIGEILGIAHLLEHILIS----FDSS----KF-----L--ANASTARSYMSFWCKSIRGRTYIDAVRTLISWFFD 91 (590)
T ss_pred cccccchHHHHhHHHHHHHHeee----cchH----Hh-----h--cccchhhhhhhhhhhhccCCChhHHHHHHHHHhhc
Confidence 55666667788999999999863 1111 11 1 68899999888865443334566777777888877
Q ss_pred CCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcC-----ChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 94 PKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYS-----QPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 94 p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
-.-..+. |. +..|.+-++..++ +--..+++.+ ..+.+|.-|. +|-..-++++
T Consensus 92 ~g~Lk~~--F~-----------------~~~i~~hikELENEYYFRnEvfHCmDvL-tfL~gGDLYN---GGRi~ML~~l 148 (590)
T PF03410_consen 92 NGKLKDN--FS-----------------RSKIKNHIKELENEYYFRNEVFHCMDVL-TFLGGGDLYN---GGRIDMLNNL 148 (590)
T ss_pred CCccccc--cc-----------------HhHHHHHHHHHhhhhhhhhhHHHHHHHH-HHhcCCcccC---CchHHHHhhh
Confidence 5433444 54 3344444444322 1122222222 2333443332 4555555544
Q ss_pred C--HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccc
Q 004392 169 T--FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF 213 (756)
Q Consensus 169 t--~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~ 213 (756)
+ ++-|.+=-++--. .|.+|+| -.++ +.++++++ +.|++++.
T Consensus 149 ~~i~~mL~~RM~~I~G-pniVIFV-k~l~-~~~l~lL~-~TFGtLP~ 191 (590)
T PF03410_consen 149 NDIRNMLSNRMHRIIG-PNIVIFV-KELN-PNILSLLS-NTFGTLPS 191 (590)
T ss_pred HHHHHHHHHHHHhhcC-CcEEEEE-eccC-HHHHHHHH-HhcCCCCC
Confidence 3 2333333333433 4555544 4577 55788886 77877653
No 33
>PHA03081 putative metalloprotease; Provisional
Probab=86.61 E-value=1.5 Score=46.50 Aligned_cols=158 Identities=16% Similarity=0.192 Sum_probs=89.5
Q ss_pred EEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHhhhhC
Q 004392 14 IVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFF 93 (756)
Q Consensus 14 ~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~~~~ 93 (756)
.|+-.+-.+--|+||+|||++..= +.. .. -.||.|++.+.+|-..+...+....++.-+..|+|.
T Consensus 27 fgfe~di~~~lg~ahllehili~f----d~~----~f-------~anast~r~ymsfwc~sirg~~y~DAvrtliSWFF~ 91 (595)
T PHA03081 27 FGFENDIGEILGIAHLLEHILISF----DSS----KF-------VANASTARSYMSFWCKSIRGRSYIDAIRTLISWFFD 91 (595)
T ss_pred cccccchHHHHhHHHHHHHHeeec----chH----Hh-------cccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhcc
Confidence 455566667889999999998631 111 11 168889998888864343334466788888999999
Q ss_pred CCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcC-----ChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 94 PKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYS-----QPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 94 p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
+.-..+. |.. -.|.+-++..++ +--..+++.+ ..+.+|.-| -+|-..-++++
T Consensus 92 ~~~Lr~~--F~~-----------------~~ik~~ikELENEYYFRnEvfHCmDvL-TfL~gGDLY---NGGRi~ML~~l 148 (595)
T PHA03081 92 NGKLKDN--FSL-----------------SKIRNHIKELENEYYFRNEVFHCMDVL-TFLGGGDLY---NGGRIDMLDNL 148 (595)
T ss_pred CCccccc--cch-----------------hhHHHHHHHHhhhhhhhhhhHHHHHHH-HHhcCCccc---CCchHHHHhhh
Confidence 8855555 653 344444443322 2122223222 233344333 25555555555
Q ss_pred C--HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccc
Q 004392 169 T--FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF 213 (756)
Q Consensus 169 t--~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~ 213 (756)
. ++-|.+=-++- ...|.+|+| -.++ ..++.++. +.|++++.
T Consensus 149 ~~i~~~L~~RM~~I-~GpniVIFV-k~ln-~~~l~lL~-~TFGtLP~ 191 (595)
T PHA03081 149 NDVRDMLSNRMHRI-SGPNIVIFV-KELN-PNTLSLLN-NTFGTLPS 191 (595)
T ss_pred HHHHHHHHHHHHhh-cCCcEEEEE-eccC-HHHHHHHH-HhcCCCCC
Confidence 3 23333333333 334555544 4577 55788886 77877653
No 34
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=51.59 E-value=37 Score=21.43 Aligned_cols=22 Identities=5% Similarity=0.185 Sum_probs=17.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHh
Q 004392 696 DFLRELEMDDDTLTKAIIGTIG 717 (756)
Q Consensus 696 ~~l~~~~it~~eL~~ak~~~~~ 717 (756)
+...++-||++|.++.|..+++
T Consensus 10 ~l~~~G~IseeEy~~~k~~ll~ 31 (31)
T PF09851_consen 10 ELYDKGEISEEEYEQKKARLLS 31 (31)
T ss_pred HHHHcCCCCHHHHHHHHHHHhC
Confidence 3447889999999999998763
No 35
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=39.15 E-value=36 Score=34.13 Aligned_cols=72 Identities=7% Similarity=-0.023 Sum_probs=41.9
Q ss_pred hHHHHHhccc-CCCCCCCCcHHHHHHhcccCcccceee----cC----CceE-EEe-ccCCHHhHHHHHHHHHhhhhCCC
Q 004392 27 PHILEHSVLC-GSRKYPLKEPFVELLKGSLNTFLNAFT----YP----DRTC-YPV-ASTNTKDFYNLVDVYFDAVFFPK 95 (756)
Q Consensus 27 ah~lehl~~~-gs~~~~~~~~~~~~l~~~~g~~~na~t----~~----d~t~-y~~-~~~~~~~~~~~l~~~~d~~~~p~ 95 (756)
.-++..++.+ ||++++..++ ...+....|+ +++.+ .. .... +.+ ..+..++++++++++.+++.+|.
T Consensus 111 l~Ll~~ll~~lgT~~~sy~el-~~~i~~~tGG-is~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~ 188 (248)
T PF08367_consen 111 LPLLTDLLGELGTKNYSYEEL-SNEIDLYTGG-ISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETD 188 (248)
T ss_dssp HHHHHHHCCCS-BSSS-HHHH-HHHHHHHSSE-EEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-
T ss_pred HHHHHHHHHhCCCCCCCHHHH-HHHHHHhCCC-eEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccC
Confidence 3445555544 9999998884 4444344443 33322 22 1111 122 23678999999999999999999
Q ss_pred Ccccc
Q 004392 96 CVEDF 100 (756)
Q Consensus 96 ~~~~~ 100 (756)
|.+.+
T Consensus 189 f~d~~ 193 (248)
T PF08367_consen 189 FDDKE 193 (248)
T ss_dssp TT-HH
T ss_pred CCcHH
Confidence 97765
No 36
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=22.15 E-value=64 Score=19.95 Aligned_cols=11 Identities=55% Similarity=1.238 Sum_probs=6.6
Q ss_pred HHHHHHHHHhh
Q 004392 170 FEEFKEFHRKY 180 (756)
Q Consensus 170 ~~~l~~f~~~~ 180 (756)
..++++||++|
T Consensus 16 lk~Ike~Hrr~ 26 (28)
T PF12108_consen 16 LKEIKEYHRRY 26 (28)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHhC
Confidence 35677777765
No 37
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=21.14 E-value=77 Score=23.40 Aligned_cols=24 Identities=21% Similarity=0.563 Sum_probs=17.1
Q ss_pred hhhhhcCCCCCccccccCCCceEEE
Q 004392 652 DRVRVSGGAYGGFCDFDSHSGVFSF 676 (756)
Q Consensus 652 ~~iRekglaYg~~~~~~~~~g~~~~ 676 (756)
+.+|+|.|.|| +|.+....+...+
T Consensus 34 N~lR~keGvYG-~c~~~e~~~~i~i 57 (63)
T PF03295_consen 34 NELRNKEGVYG-SCYYKENDQSIRI 57 (63)
T ss_pred HHhhhccCcee-EEEEecCCcEEEE
Confidence 56799999999 6777655554444
No 38
>PF05838 Glyco_hydro_108: Glycosyl hydrolase 108; InterPro: IPR008565 This family consists of several hypothetical bacterial sequences as well as one viral sequence Q9MC03 from SWISSPROT, the function of this family is unknown.; PDB: 2NR7_A 2IKB_B 2IS5_A.
Probab=20.44 E-value=82 Score=25.38 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=17.8
Q ss_pred cCccCCCCHHHHHHHHHh-hcCCCCc
Q 004392 162 PKVIPKLTFEEFKEFHRK-YYHPSNA 186 (756)
Q Consensus 162 ~~~i~~lt~~~l~~f~~~-~y~p~n~ 186 (756)
..+|.+||.++.+++|++ |+.|-++
T Consensus 39 ~~d~~~Lt~~~A~~iY~~~yW~~~~~ 64 (83)
T PF05838_consen 39 AGDMRDLTRDQAKAIYRRDYWDPLGC 64 (83)
T ss_dssp -S-CCCS-HHHHHHCHHHHTTCCCTG
T ss_pred cCchhhcCHHHHHHHHHHHhcCccch
Confidence 789999999999999975 5576655
Done!