Query 004392
Match_columns 756
No_of_seqs 364 out of 2891
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 23:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5m_A Falcilysin; M16 metallo 100.0 3E-101 1E-105 917.4 66.8 752 1-756 99-1145(1193)
2 2fge_A Atprep2;, zinc metallop 100.0 7.9E-86 2.7E-90 800.2 76.9 745 2-756 51-949 (995)
3 3cww_A Insulysin, insulin-degr 100.0 5E-60 1.7E-64 574.4 44.2 689 11-756 62-903 (990)
4 1q2l_A Protease III; hydrolase 100.0 6.4E-57 2.2E-61 544.4 51.5 689 10-756 47-878 (939)
5 3eoq_A Putative zinc protease; 100.0 9.9E-40 3.4E-44 356.1 30.7 365 364-756 6-380 (406)
6 3hdi_A Processing protease; CA 100.0 3.5E-39 1.2E-43 353.8 33.6 365 364-756 6-380 (421)
7 3gwb_A Peptidase M16 inactive 100.0 1E-37 3.5E-42 343.7 32.4 368 363-756 17-396 (434)
8 1hr6_B Beta-MPP, mitochondrial 100.0 3.5E-37 1.2E-41 340.3 36.4 366 364-756 11-403 (443)
9 1pp9_A Ubiquinol-cytochrome C 100.0 1.4E-37 4.8E-42 343.5 32.4 364 364-756 18-403 (446)
10 3ami_A Zinc peptidase; alpha/b 100.0 1.3E-36 4.5E-41 335.6 33.4 368 364-756 11-397 (445)
11 3amj_B Zinc peptidase inactive 100.0 2.8E-36 9.7E-41 331.0 30.4 365 363-756 7-389 (424)
12 3d3y_A Uncharacterized protein 100.0 8.7E-35 3E-39 319.3 31.2 367 364-756 7-399 (425)
13 1hr6_A Alpha-MPP, mitochondria 100.0 3.9E-35 1.3E-39 326.4 27.9 363 364-756 10-403 (475)
14 1pp9_B Ubiquinol-cytochrome C 100.0 6.9E-35 2.4E-39 321.5 27.0 362 363-756 27-406 (439)
15 3cx5_A Cytochrome B-C1 complex 100.0 2.6E-33 9.1E-38 308.1 26.5 356 364-756 5-388 (431)
16 3eoq_A Putative zinc protease; 100.0 1.5E-34 5.3E-39 315.1 13.9 292 10-327 28-340 (406)
17 3go9_A Insulinase family prote 100.0 8.6E-33 2.9E-37 307.4 24.4 362 363-756 29-423 (492)
18 3ami_A Zinc peptidase; alpha/b 100.0 6.8E-33 2.3E-37 305.9 16.8 298 9-327 32-357 (445)
19 3hdi_A Processing protease; CA 100.0 2.5E-32 8.5E-37 299.2 14.4 292 10-327 28-340 (421)
20 1pp9_A Ubiquinol-cytochrome C 100.0 2.7E-31 9.2E-36 293.2 18.2 292 10-327 39-363 (446)
21 1q2l_A Protease III; hydrolase 100.0 6E-30 2E-34 308.9 27.3 346 364-731 25-391 (939)
22 3cww_A Insulysin, insulin-degr 100.0 4E-29 1.4E-33 303.2 29.7 361 364-745 39-420 (990)
23 1hr6_A Alpha-MPP, mitochondria 100.0 1.4E-30 4.6E-35 289.7 14.7 179 10-210 31-209 (475)
24 1hr6_B Beta-MPP, mitochondrial 100.0 8E-30 2.7E-34 281.3 16.9 181 10-211 33-213 (443)
25 3s5m_A Falcilysin; M16 metallo 100.0 1.9E-28 6.5E-33 292.4 22.8 350 364-744 91-543 (1193)
26 3cx5_B Cytochrome B-C1 complex 100.0 4.2E-28 1.4E-32 258.9 16.3 307 369-722 1-312 (352)
27 3go9_A Insulinase family prote 99.9 1.7E-28 5.9E-33 272.8 11.6 178 10-211 54-236 (492)
28 3gwb_A Peptidase M16 inactive 99.9 1.1E-27 3.7E-32 263.5 15.6 293 10-327 40-356 (434)
29 3amj_B Zinc peptidase inactive 99.9 1.2E-27 3.9E-32 262.4 15.6 290 10-326 30-348 (424)
30 1pp9_B Ubiquinol-cytochrome C 99.9 2.5E-27 8.5E-32 261.0 16.7 290 10-327 49-366 (439)
31 2fge_A Atprep2;, zinc metallop 99.9 1.3E-26 4.5E-31 280.9 21.8 345 364-740 42-434 (995)
32 3cx5_A Cytochrome B-C1 complex 99.9 1.1E-26 3.7E-31 255.2 13.9 286 10-327 27-346 (431)
33 3cx5_B Cytochrome B-C1 complex 99.9 1.6E-26 5.5E-31 246.6 12.3 175 10-211 17-193 (352)
34 3d3y_A Uncharacterized protein 99.9 9.1E-26 3.1E-30 247.4 13.9 292 10-327 29-359 (425)
35 3ih6_A Putative zinc protease; 99.6 1.5E-15 5.2E-20 146.9 12.2 142 614-756 20-169 (197)
36 3ih6_A Putative zinc protease; 96.6 0.042 1.5E-06 51.7 15.0 167 381-573 24-194 (197)
37 1g6u_A Domain swapped dimer; d 41.6 65 0.0022 20.4 5.3 27 303-329 6-33 (48)
38 3ff5_A PEX14P, peroxisomal bio 21.1 92 0.0031 21.7 3.3 21 693-713 32-52 (54)
No 1
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=3.1e-101 Score=917.36 Aligned_cols=752 Identities=28% Similarity=0.464 Sum_probs=657.9
Q ss_pred CceeccCC---CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCH
Q 004392 1 MSVSNDDE---NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNT 77 (756)
Q Consensus 1 ~~~~~~~~---~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~ 77 (756)
+|+.++++ +++|.+|+++||++++|+|||+|||+|+||++||..+++.++..+++|+++||+|++|+|+|++.+.+.
T Consensus 99 l~i~~~~~~~~~~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~ 178 (1193)
T 3s5m_A 99 ISLGTNDPLDVEQAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNN 178 (1193)
T ss_dssp EEEEECCTTCCCEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSH
T ss_pred EEEECCCCCeEEEEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCH
Confidence 35666665 478999999999999999999999999999999999999888766799999999999999999987778
Q ss_pred HhHHHHHHHHHhhhhCCCCcccccccccccceeccCCC--------------CCCccchhHHHHHhhhhcCChHHHHHHH
Q 004392 78 KDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNP--------------SEDITYKGVVFNEMKGVYSQPDNILGRA 143 (756)
Q Consensus 78 ~~~~~~l~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~--------------~~~~~e~~~v~~e~~~~~~~~~~~~~~~ 143 (756)
+++.++|++++|++++|.|.+++.+|.+|+||+|+++. +.+...|++|++||++..++|..++.+.
T Consensus 179 ~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~ 258 (1193)
T 3s5m_A 179 KDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHE 258 (1193)
T ss_dssp HHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHH
Confidence 99999999999999999999988889999999988531 2234558999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCcCccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccc------------
Q 004392 144 AQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTI------------ 211 (756)
Q Consensus 144 ~~~~~~~~~~y~~~~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~------------ 211 (756)
+.+.+||+|||+++++|++++|+++|+++|++||++||+|+||+|+++||+|++++++++++. |+.+
T Consensus 259 l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~~-f~~~~~~~~~~~~~~~ 337 (1193)
T 3s5m_A 259 EMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQY-LGQLDYSKYRDDAVES 337 (1193)
T ss_dssp HHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHHH-HTTCCGGGCCCCCCCC
T ss_pred HHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHHH-hccCCCCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999998721 1000
Q ss_pred ---------------cc-------------------------c-----------------------------ccc-----
Q 004392 212 ---------------EF-------------------------S-----------------------------LRE----- 217 (756)
Q Consensus 212 ---------------~~-------------------------~-----------------------------~~~----- 217 (756)
++ . ..+
T Consensus 338 ~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~ 417 (1193)
T 3s5m_A 338 VEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLL 417 (1193)
T ss_dssp CCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CCCCSTTCCCSHHHHHHHH
T ss_pred cCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCcccccccccccccccccccccccccccccccccccCccHHHHHH
Confidence 00 0 000
Q ss_pred ---------------------------c-------------------CCC-C--------c-------------------
Q 004392 218 ---------------------------N-------------------NTG-S--------F------------------- 223 (756)
Q Consensus 218 ---------------------------~-------------------~~~-~--------~------------------- 223 (756)
. ... . .
T Consensus 418 vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~g 497 (1193)
T 3s5m_A 418 IINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEG 497 (1193)
T ss_dssp HHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCCCCHHHHHHHhcCCeeeecccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcC
Confidence 0 000 0 0
Q ss_pred ------------------------hhhHHHHHhhhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhcc
Q 004392 224 ------------------------PRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN 279 (756)
Q Consensus 224 ------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~ 279 (756)
|.|+.++..+.+.|.+++||...+++...+..|++.+.. ++.+|++++++||++
T Consensus 498 i~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~--~~~~~~~li~~yll~ 575 (1193)
T 3s5m_A 498 FNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKN--EPMYLEKFVEKHFIN 575 (1193)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHH--STTHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhc--ChHHHHHHHHHHhcc
Confidence 001111122345788999999999999999999998864 356999999999999
Q ss_pred CCCeeEEEEecCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCCCccccccCCCCCCCCCCCCCCCC
Q 004392 280 NPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRV 359 (756)
Q Consensus 280 ~~~~~~~~~~p~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~~~~~l~~lp~l~~~di~~~~~~~ 359 (756)
|.|++++++.|+.++.+..++.+++.|+.++..+|++|++++.++.+.+..+|+.+++++++++||.++++||++....+
T Consensus 576 n~~~~~~~~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~L~~~q~~~~~~e~l~~lP~l~~~Di~~~~~~~ 655 (1193)
T 3s5m_A 576 NAHRSVILLEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEHLNKFPIISISDLNKKTLEV 655 (1193)
T ss_dssp CCCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHTTSCCCCGGGSCSSCCCC
T ss_pred CCceEEEEEEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCChhhHHhCCcCcHHHcCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCcc--------------------------------------------------------------cccCCceEEEeecC
Q 004392 360 PTEV--------------------------------------------------------------GDINGVKVLQHDLF 377 (756)
Q Consensus 360 ~~~~--------------------------------------------------------------~~~nG~~v~~~~~~ 377 (756)
|..+ ...||++|++++.+
T Consensus 656 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~~~~~ 735 (1193)
T 3s5m_A 656 PVNVYFTNINENNNIMETYNKLKTNEHMLKDNMDVFLKKYVLKNDKHNTNNNNNNNNNMDYSFTETKYEGNVPILVYEMP 735 (1193)
T ss_dssp CCEEEEECTTTCSCHHHHHHHHHTCHHHHHHHHHHHHHHHTTC---------------------CCTTTTCEEEEEEECC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCeEEEEEECC
Confidence 7662 01379999999999
Q ss_pred CCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCC------CCCCCceEE
Q 004392 378 TNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIH------GKEDPCCCM 451 (756)
Q Consensus 378 ~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~------~~~~~~~~~ 451 (756)
|||++|++++|+++.+++++.+++++|+.+|++.||+++++.|+++.++.++||++++++..+.. +.....+++
T Consensus 736 TNGIvY~~l~fdl~~l~~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~ 815 (1193)
T 3s5m_A 736 TTGIVYLQFVFSLDHLTVDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALF 815 (1193)
T ss_dssp CTTEEEEEEEEECTTCCHHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEE
T ss_pred CCCeEEEEEEEECCCCCHHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceE
Confidence 99999999999999999899999999999999999999999999999999999999998754321 112237889
Q ss_pred EEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhccchHH
Q 004392 452 VVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYL 531 (756)
Q Consensus 452 ~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~ 531 (756)
.++++|+.++++++++|+.++|.+|.|++.+|+++++.+.++.+++.+.++||.+|..++.+.+++.+++.+.++|++++
T Consensus 816 ~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~Gl~~~ 895 (1193)
T 3s5m_A 816 NLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYGYENY 895 (1193)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHSHHHH
T ss_pred EEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCChHHH
Confidence 99999999999999999999999999999789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCC----CC----------cc
Q 004392 532 EFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTN----SP----------VE 597 (756)
Q Consensus 532 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~----~~----------~~ 597 (756)
.+++++.+.++++++.+.++|+++|+++|+++|++++|+|+.+..+++.+.++++++.|+.. .. ..
T Consensus 896 ~fl~~l~~~~e~~~~~l~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 975 (1193)
T 3s5m_A 896 LKLQEQLELAENDFKTLENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDP 975 (1193)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCC
T ss_pred HHHHHHHHhhHhhHHHHHHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccc
Confidence 99999988888999999999999999999999999999999976667776666666555310 00 00
Q ss_pred -ccccc---------ccCCCCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhcCccchhhhhhcCCCCCccccc
Q 004392 598 -RVKWK---------AHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDF 667 (756)
Q Consensus 598 -~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRekglaYg~~~~~ 667 (756)
...+. ......++.+..|.+|+|++.+++..+.++++++++.|++.|||++|||++|||||||||+++++
T Consensus 976 ~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~~~~~d~~al~Vl~~iLg~~~L~~eIREkgGAYg~~s~~ 1055 (1193)
T 3s5m_A 976 TVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGVFADI 1055 (1193)
T ss_dssp CCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSCTTCBCCTHHHHHHHHHHHTHHHHHHTTTTCCSEEEEEE
T ss_pred cccccccccccccccccccccceeEecCCcceEEEEEecCCCCCCCchHHHHHHHHHHCccHHHHHHHhcCCeeEEEEec
Confidence 00010 01123456778899999999999999999999999999999999899999999999999999999
Q ss_pred cCCCceEEEEEeeCCChhhHHHHHHhHHHHHhc--CCCCHHHHHHHHHHHHhhcccCCChhHHHHHHHHHHHhCCCHHHH
Q 004392 668 DSHSGVFSFLSYRDPNLLKTLDIYDGTVDFLRE--LEMDDDTLTKAIIGTIGDVDAYQLPDAKGYSSLLRHLLGITEEER 745 (756)
Q Consensus 668 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~it~~eL~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 745 (756)
+ ..|.|.|++|++|++.++++++.++++++++ .++|++||++||.+++++++.+.+|...+.+.+..+++|++.+++
T Consensus 1056 ~-~~G~f~~~syrdp~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d~p~~p~~~a~~~~~~~~~Gl~~d~~ 1134 (1193)
T 3s5m_A 1056 E-YDGSVVFLSARDPNLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTIDKPRRGIELSKLSFLRLISNESEQDR 1134 (1193)
T ss_dssp C-TTSEEEEEEESBSCSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHSCCCCTHHHHHHHHHHHHTTCCHHHH
T ss_pred c-CCCcEEEEEEeCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHcCcCHHHH
Confidence 8 8899999999999999999999999999987 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 004392 746 QRRREEILSTR 756 (756)
Q Consensus 746 ~~~~~~i~~vt 756 (756)
++++++|++||
T Consensus 1135 ~~~~~~I~aVT 1145 (1193)
T 3s5m_A 1135 VEFRKRIMNTK 1145 (1193)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHcCC
Confidence 99999999997
No 2
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.9e-86 Score=800.15 Aligned_cols=745 Identities=77% Similarity=1.245 Sum_probs=618.6
Q ss_pred ceeccCCCcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHH
Q 004392 2 SVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFY 81 (756)
Q Consensus 2 ~~~~~~~~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~ 81 (756)
++.+.+.+.+|.+|+++|+++++|+|||||||+|+||++||..+++.+++++.+|+++||+|+.|+|+|++.+.+.+++.
T Consensus 51 ~~~~~~~~~~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~ 130 (995)
T 2fge_A 51 SVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFY 130 (995)
T ss_dssp EEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHH
T ss_pred EEEcCCCccEEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHH
Confidence 45667788899999999999999999999999999999999999998998888999999999999999998777789999
Q ss_pred HHHHHHHhhhhCCCC--cccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCC
Q 004392 82 NLVDVYFDAVFFPKC--VEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSG 159 (756)
Q Consensus 82 ~~l~~~~d~~~~p~~--~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 159 (756)
++|++++|++++|.| ++++ |++|+||+++++++.+.++|++|++||++..++|..++.+.+.+.+|++|||+++++
T Consensus 131 ~~l~~~~d~~~~p~~~~~~~~--~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~ 208 (995)
T 2fge_A 131 NLVDVYLDAVFFPKCVDDAHT--FQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSG 208 (995)
T ss_dssp HHHHHHHHHHHSBGGGTSSHH--HHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTT
T ss_pred HHHHHHHHHHhCCCCCCCHHH--HHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 999999999999999 8888 999999999988777788999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccccc-------------------------cc
Q 004392 160 GDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIE-------------------------FS 214 (756)
Q Consensus 160 G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~-------------------------~~ 214 (756)
|++++|+++|+++|++||++||+|+||+|+++||+|+++++++|++ .|+.++ +.
T Consensus 209 G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (995)
T 2fge_A 209 GDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSE-YLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYP 287 (995)
T ss_dssp CCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHH-HHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEE
T ss_pred CChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHH-HHhhCCccccCCCcccCCCCCCCCCceEEEecc
Confidence 9999999999999999999999999999999999999999999973 322211 00
Q ss_pred c---cc--c--------CCCC----chhh--HHHHHhh---------------------h-cc-c---------------
Q 004392 215 L---RE--N--------NTGS----FPRG--LSLMLRS---------------------M-GK-W--------------- 237 (756)
Q Consensus 215 ~---~~--~--------~~~~----~~~~--~~~~~~~---------------------~-~~-~--------------- 237 (756)
. .. . ..+. .+.. +.++... . .. +
T Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~ 367 (995)
T 2fge_A 288 AGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGTPASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKG 367 (995)
T ss_dssp CCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSSTTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEE
T ss_pred cCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCcceeeccccccccCeEEEEEEEe
Confidence 0 00 0 0000 0100 0000000 0 00 0
Q ss_pred ---------------------------------------------------------------ccCCCCccCcCcchHHH
Q 004392 238 ---------------------------------------------------------------IYDMNPFEPLKYEKPLM 254 (756)
Q Consensus 238 ---------------------------------------------------------------~~~~~~~~~l~~~~~l~ 254 (756)
.+++++...+.+...+.
T Consensus 368 ~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (995)
T 2fge_A 368 VSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLK 447 (995)
T ss_dssp ECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHH
Confidence 00000000000011111
Q ss_pred HHHHHHhccCCcc----hHHHHHHHhhccCCCeeEEEEecCccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 004392 255 ALKARLAEEGSKA----VFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRL 330 (756)
Q Consensus 255 ~l~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~ 330 (756)
.+...+. .. .++.+.++|+.++.+.+.+.+.|+........+.++++++.....+++++++++.++.+.+..
T Consensus 448 ~~~~~~~----~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 523 (995)
T 2fge_A 448 ALKTRIA----EEGSKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKL 523 (995)
T ss_dssp HHHHHHH----HHCHHHHHHHHHHHHTTTCCCEEEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc----CCccHHHHHHHHHHHhcCCCceEEEEEEcCccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 1111110 12 566777778876678888888898877766667788888888889999999999998888888
Q ss_pred HhCCCCCccccccCCCCCCCCCCCCCCCCCCcccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhh
Q 004392 331 KQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKE 410 (756)
Q Consensus 331 ~~~~~~~~~~l~~lp~l~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~ 410 (756)
++..+++++.++.+|.+.+.||+.....+|......||++|++++.+++++++++++|+++.++++..+++++++++|.+
T Consensus 524 ~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 603 (995)
T 2fge_A 524 KQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQSLLE 603 (995)
T ss_dssp HHTSCCCHHHHTTSCCCCGGGSCSSCCCCCCEEEESSSSEEEEEECCCSSEEEEEEEEECTTSCTTTGGGHHHHHHHHHH
T ss_pred HhcCCCChHHHHhcCCCCHhhcCccCCCCCceeeecCCceEEEEecCCCCeEEEEEEeeCCCCCHHHhhhHHHHHHHHHh
Confidence 99888788889999999999998776667777667899999999999999999999999998887888999999999998
Q ss_pred cCCCCCCHHHHHHHHhhcccceEE-eeeeccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 004392 411 MGTKDLSFVQLDQLIGRKTGGISV-YPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVS 489 (756)
Q Consensus 411 ~Gt~~~~~~el~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~ 489 (756)
.||+++++.++.+.++..+|++++ +++.+ ..+.+.+++.+.+++++++++++.+++|+.+++++|.|++.++++.+++
T Consensus 604 ~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~ 682 (995)
T 2fge_A 604 MGTKDLTFVQLNQLIGRKTGGISVYPLTSS-VRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVS 682 (995)
T ss_dssp SCCSSSCHHHHHHHHHHHSSEEEEEEEEEE-ETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCceEeeccccc-cCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 899999999999999988888888 44321 0011113488999999999999999999999999999997439999999
Q ss_pred HHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEE
Q 004392 490 QSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINM 569 (756)
Q Consensus 490 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v 569 (756)
+.++.+.+...++++.+|..++.+.+++.+++.+..+|++++.+++.+.+.+++.++.+.++|+++|+++|++++++++|
T Consensus 683 ~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i~~~L~~~~~~~~~~~~~~~~v 762 (995)
T 2fge_A 683 QSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNM 762 (995)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCSTTCEEEE
T ss_pred HHHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCcCCcEEEE
Confidence 99999999988889999999999999999999999999999999887766555677788999999999999999999999
Q ss_pred EeCccchhhHHHHHHHHHhcC-CCCCCcccccccccCCCCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhcCc
Q 004392 570 TADGKNLKNSERFVGKFLDML-PTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNV 648 (756)
Q Consensus 570 ~Gd~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s 648 (756)
+||++..+++.+.++++|+.| |..... ......+.....+.+..|.+++++..+++.+++++++++++.|++.|||.+
T Consensus 763 ~Gd~~~~~~~~~~~~~~~~~l~p~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~al~vl~~iLg~~ 841 (995)
T 2fge_A 763 TADGKSLTNVEKSVAKFLDLLPENPSGG-LVTWDGRLPLRNEAIVIPTQVNYVGKAGNIYSTGYELDGSAYVISKHISNT 841 (995)
T ss_dssp EECHHHHHHHHHHHHHHHHTSCSSCSSC-SCCCCCCCCCCCEEEECSCSSBEEEEEEEGGGGTCCCCTHHHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHHHHHHhhCccCCCC-CCcccccCCccceEEEecCceEEEEEecCCCCCCCcccHHHHHHHHHHCCC
Confidence 999974478999999999999 754332 111111112233445567788888877777789999999999999999988
Q ss_pred cchhhhhhcCCCCCccccccCCCceEE-EEEeeCCChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCCChhH
Q 004392 649 WLWDRVRVSGGAYGGFCDFDSHSGVFS-FLSYRDPNLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQLPDA 727 (756)
Q Consensus 649 ~L~~~iRekglaYg~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~~~~~ 727 (756)
+||++||++|||||+++++.. .|.+. |++|++|+..++++++.++++++++.++|++||++||.+++++++.+.+|..
T Consensus 842 ~L~~~iRe~g~aYg~~s~~~~-~G~~~~~~s~~dp~~~~~~~~~~~~~~~l~~~~~te~el~~ak~~li~~~~~~~~~~~ 920 (995)
T 2fge_A 842 WLWDRVRVSGGAYGGFCDFDS-HSGVFSYLSYRDPNLLKTLDIYDGTGDFLRGLDVDQETLTKAIIGTIGDVDSYQLPDA 920 (995)
T ss_dssp HHHHHTTTTTCCSEEEEEEET-TTTEEEEEEESBSCSHHHHHHHHTHHHHHHTCCCCHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred ccHHHhhhcCCCcccceEeCC-CccEEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhccCCCCHHH
Confidence 999999999999999999986 79999 9999999999999999999999998899999999999999999988889999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 004392 728 KGYSSLLRHLLGITEEERQRRREEILSTR 756 (756)
Q Consensus 728 ~~~~~~~~~~~g~~~~~~~~~~~~i~~vt 756 (756)
.+.+.+..++.|++.+++++++++|.+||
T Consensus 921 ~~~~~~~~~~~g~~~~~~~~~~~~i~~vT 949 (995)
T 2fge_A 921 KGYSSLLRHLLGVTDEERQRKREEILTTS 949 (995)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCcCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997
No 3
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=5e-60 Score=574.40 Aligned_cols=689 Identities=13% Similarity=0.069 Sum_probs=489.0
Q ss_pred EEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHhh
Q 004392 11 VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDA 90 (756)
Q Consensus 11 ~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d~ 90 (756)
+|++|+++||++..|+|||||||+|+||++||..+.+.++++. +|+++||+|+.|+|+|++.+ +.++++++|++++|+
T Consensus 62 ~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~-~Gg~~NA~T~~d~T~y~~~~-~~~~l~~~l~~~~d~ 139 (990)
T 3cww_A 62 DVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSE-HAGSSNAFTSGEHTNYYFDV-SHEHLEGALDRFAQF 139 (990)
T ss_dssp EESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHT-TTCEEEEEECSSCEEEEEEE-EGGGHHHHHHHHHGG
T ss_pred EecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHH-cCCceeEEECCCceEEEEEe-CHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999996667788855 89999999999999999854 567999999999999
Q ss_pred hhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC--
Q 004392 91 VFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL-- 168 (756)
Q Consensus 91 ~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l-- 168 (756)
+++|.|++++ |++| |++|++|+++..++|..++.+.+...+|++|||+++++|++++|.++
T Consensus 140 ~~~p~f~~~~--~~~E---------------~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~ 202 (990)
T 3cww_A 140 FLSPLFDESA--KDRE---------------VNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPN 202 (990)
T ss_dssp GTCBCCCHHH--HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHH
T ss_pred HhCcCCCHHH--HHHH---------------HHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccc
Confidence 9999999998 8876 99999999998899999999999999999999999999999999999
Q ss_pred -----CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccccccccccc---CCCCc-hh--hHHHH------H
Q 004392 169 -----TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLREN---NTGSF-PR--GLSLM------L 231 (756)
Q Consensus 169 -----t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~-~~--~~~~~------~ 231 (756)
++++|++||++||+|+||+|+++||+|+++++++|+ ..|+.++...... ..+.. +. +..+. .
T Consensus 203 ~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (990)
T 3cww_A 203 QEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVV-KLFSEVENKNVPLPEFPEHPFQEEHLKQLYKIVPIKDI 281 (990)
T ss_dssp HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHH-HHHTTSCCCCCCCCCCCSCSSCGGGSSEEEEECCSSSC
T ss_pred cccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHH-HHhcCCccCCCCCCCCCCCCCChHHcCeEEEEEECCCC
Confidence 999999999999999999999999999999999997 4555443211000 00000 00 00000 0
Q ss_pred -hhhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhcc----------CC-CeeEEEEecCc----cch
Q 004392 232 -RSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN----------NP-HCVTVEMQPDP----EKA 295 (756)
Q Consensus 232 -~~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~----------~~-~~~~~~~~p~~----~~~ 295 (756)
...-.|..+... .......+..+...++++..++++..|.++.+.. .. -.+.+.+.... ...
T Consensus 282 ~~l~~~~~~~~~~--~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~ 359 (990)
T 3cww_A 282 RNLYVTFPIPDLQ--KYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVE 359 (990)
T ss_dssp CEEEEEEEECCCG--GGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHH
T ss_pred cEEEEEEEcCChh--hhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCCCCccEEEEEEEEChHHhhhHH
Confidence 001123221110 0011345677787776533334777777663321 01 11223333221 223
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCC---------------CCcccc----c--------------
Q 004392 296 SRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETP---------------DPPEAL----R-------------- 342 (756)
Q Consensus 296 ~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~---------------~~~~~l----~-------------- 342 (756)
+......+++.+....+++++++++++.....-..+.... .+++.+ .
T Consensus 360 ~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~t~~~i~~~~ 439 (990)
T 3cww_A 360 DIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILHYYPLEEVLTAEYLLEEFRPDLIEMVL 439 (990)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTTSCGGGTTTTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHhhCCHHHHhccchhhhcCCHHHHHHHH
Confidence 3333444444444588999999998876433211111100 000000 0
Q ss_pred -------------------------------------------------------------cCCC-CCCCCCCCCCCCCC
Q 004392 343 -------------------------------------------------------------SVPS-LSLRDIPKEPIRVP 360 (756)
Q Consensus 343 -------------------------------------------------------------~lp~-l~~~di~~~~~~~~ 360 (756)
.+|. +++.+++......|
T Consensus 440 ~~l~~~~~~~~~~~p~~~~~~~~~e~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ip~~~~~~~~~~~~~~~p 519 (990)
T 3cww_A 440 DKLRPENVRVAIVSKSFEGKTDRTEEWYGTQYKQEAIPDAVIAKWQNAALNGKFKLPTKNEFIPTNFEILPLEAAATPYP 519 (990)
T ss_dssp TTCSGGGCEEEEECGGGTTCCCEECTTTCCEEEEEECCHHHHHHHHTCCCCTTCCCCCCCTTCCCCCCCCCCCTTCCSSC
T ss_pred HhcCHhHEEEEEEcCCCCCCcCcccceeCceeeeecCCHHHHHHhhcCCCCccccCCCCCCCCCcccccccCCCCCCCCC
Confidence 0011 11112211112233
Q ss_pred CcccccCCceEEEeecCC----CcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEee
Q 004392 361 TEVGDINGVKVLQHDLFT----NDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYP 436 (756)
Q Consensus 361 ~~~~~~nG~~v~~~~~~~----~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~ 436 (756)
......||++|++++..+ ++.+++++.++.+..+.+..++++++..++... ++..++...+. |.++++++
T Consensus 520 ~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll~~~----~~~~~~~~~l~--G~~~~~~~ 593 (990)
T 3cww_A 520 ALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELLKDS----LNEYAYAAELA--GLSYDLQN 593 (990)
T ss_dssp EEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHHHHH----HHHHHHHHHHT--TEEEEEEE
T ss_pred eeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHH----HHHhhhHHHhC--CeEEEEEE
Confidence 334567999999998765 778888888877766666678889999887752 35666766664 33444444
Q ss_pred eeccCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccC
Q 004392 437 FTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLN 516 (756)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 516 (756)
+ .+.+.+++++++++++.+++++.+++.+|.|++ ++++.++++.+..+.+...+.|+.++...+.+.++
T Consensus 594 ~----------~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~-~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~ 662 (990)
T 3cww_A 594 T----------IYGMYLSVKGYNDKQPILLKKIIEKMATFEIDE-ARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMT 662 (990)
T ss_dssp E----------TTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHB
T ss_pred c----------CCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhC
Confidence 3 467999999999999999999999999999985 89999999999999998887789999988888776
Q ss_pred hhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHH---HHHHHhcCCCC
Q 004392 517 TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERF---VGKFLDMLPTN 593 (756)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~---~~~~~~~l~~~ 593 (756)
+. . +......+.++.+ ..++|.+++++++++.+++++|+||++ .+++.++ +.++++.+|..
T Consensus 663 ~~-~----~~~~~~~~~l~~l----------t~~~l~~~~~~~~~~~~~~~~v~Gn~~-~~~~~~~~~~~~~~l~~l~~~ 726 (990)
T 3cww_A 663 EV-A----WTKDELKEALADV----------TLPRLKAFIPQLLSRLHIEALLHGNIT-KQAALGIMQMVEDTLIEHAHT 726 (990)
T ss_dssp SS-C----CCHHHHHHHHTTC----------CHHHHHHHHHHHHHEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHCC
T ss_pred CC-C----CCHHHHHHHHhcC----------CHHHHHHHHHHHHhhheEEEEEEcCCC-HHHHHHHHHHHHHHHhccCCC
Confidence 42 1 1111233333332 257899999999998999999999996 5666665 67888877633
Q ss_pred CCccc----ccccccCCCCce-EE--EeCCCeeEEEee-cccccCCCCcccHHHHHHHHhcCccchhhhhhc-CCCCCcc
Q 004392 594 SPVER----VKWKAHLPSANE-AI--VIPTQVNYVGKA-ANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGF 664 (756)
Q Consensus 594 ~~~~~----~~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRek-glaYg~~ 664 (756)
..... .......+.+.. .+ ..+..+++++.. +....+++++++++.|++.+|+ ++||.+||++ ||+||++
T Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il~-~~lf~~LRek~~lgY~v~ 805 (990)
T 3cww_A 727 KPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQIIS-EPAFNTLRTKEQLGYIVF 805 (990)
T ss_dssp EECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHHH-HHHHHHHTTTTCCCSEEE
T ss_pred CCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHHH-HHHHHHHHhccCCcEEEE
Confidence 11100 000011122222 23 234455554444 3333578889999999999997 7889999996 8999999
Q ss_pred ccccCCCceEEE----EEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhccc-CCChhHHHHHHHHHHHh
Q 004392 665 CDFDSHSGVFSF----LSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA-YQLPDAKGYSSLLRHLL 738 (756)
Q Consensus 665 ~~~~~~~g~~~~----~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~-~~~~~~~~~~~~~~~~~ 738 (756)
+++....|.+.| .++++| +..++++++.+.++++.+ ++|++||+++|.++++++.. +.++..++.+.+..++.
T Consensus 806 s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~ 884 (990)
T 3cww_A 806 SGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-DMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIIS 884 (990)
T ss_dssp EEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHT
T ss_pred EEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHc
Confidence 998866676665 677788 678899999999999877 89999999999999999986 46888888888888876
Q ss_pred CC-CHHHHHHHHHHHhcCC
Q 004392 739 GI-TEEERQRRREEILSTR 756 (756)
Q Consensus 739 g~-~~~~~~~~~~~i~~vt 756 (756)
+. +.+.++++++.|.++|
T Consensus 885 ~~~~~d~~~~~~~~i~~vT 903 (990)
T 3cww_A 885 QQYNFDRDNTEVAYLKTLT 903 (990)
T ss_dssp TCCCTTHHHHHHHHHTTCC
T ss_pred CCCCCChHHHHHHHHHhCC
Confidence 64 7788899999998886
No 4
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=6.4e-57 Score=544.45 Aligned_cols=689 Identities=13% Similarity=0.103 Sum_probs=462.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
++|++|++.|++++.|+|||||||+|+||++||..+-+.+.+ +..|+.+||+|+.|+|+|++. ++.++++.+|++++|
T Consensus 47 l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l-~~~Gg~~NA~T~~d~T~y~~~-~~~~~l~~~L~~l~d 124 (939)
T 1q2l_A 47 LVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYL-KMHGGSHNASTAPYRTAFYLE-VENDALPGAVDRLAD 124 (939)
T ss_dssp EEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHH-HTTTCEEEEEECSSCEEEEEE-ECGGGHHHHHHHHHH
T ss_pred EEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHH-HHcCCcceEEECCCcEEEEEE-eCHHHHHHHHHHHHH
Confidence 358899999999999999999999999999999764466777 556999999999999999984 577899999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCC--
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK-- 167 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~-- 167 (756)
++.+|.|++++ |++| |++|++|+++..++|..++.+.+.+.+|++|||+++++|++++|.+
T Consensus 125 ~~~~p~f~~~~--~~~E---------------r~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~ 187 (939)
T 1q2l_A 125 AIAEPLLDKKY--AERE---------------RNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKP 187 (939)
T ss_dssp HHHCBCCCSTT--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBT
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCC
Confidence 99999999999 8876 9999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccCC---CCc-hhhHHHHH--------h-
Q 004392 168 --LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNT---GSF-PRGLSLML--------R- 232 (756)
Q Consensus 168 --lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~--------~- 232 (756)
+++++|++||++||+|+||+|+|+||+|++++.++++ ..|+.++........ +.. +....... .
T Consensus 188 ~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (939)
T 1q2l_A 188 GNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAA-DTFGRVPNKESKKPEITVPVVTDAQKGIIIHYVPALPRKV 266 (939)
T ss_dssp TBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHH-HTGGGSCCCCCCCCCCCSCSCCGGGSSEEEEECCSSCCCE
T ss_pred CchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHH-HHhhhhccCCCCCCCCCCCCCCHHHcCEEEEEEeCCCCcE
Confidence 9999999999999999999999999999999999996 666554332110000 000 00000000 0
Q ss_pred hhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhcc--------------CCCeeEEEEecC--ccchh
Q 004392 233 SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILN--------------NPHCVTVEMQPD--PEKAS 296 (756)
Q Consensus 233 ~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~p~--~~~~~ 296 (756)
..-.|..+... ......++..+...++++.++++++.|.++.+.. +.+.+.+.+.|+ ....+
T Consensus 267 l~i~~~~~~~~--~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~ 344 (939)
T 1q2l_A 267 LRVEFRIDNNS--AKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQ 344 (939)
T ss_dssp EEEEEEEECCG--GGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHH
T ss_pred EEEEEEcCChH--HhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeeccccccCCCceEEEEEEEEChhhhhhHHH
Confidence 00122111110 0001235677788887766667999888663310 011233333332 23333
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCCC---------------Ccccc----ccC-------------
Q 004392 297 RDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPD---------------PPEAL----RSV------------- 344 (756)
Q Consensus 297 ~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~~~~~~~~~~---------------~~~~l----~~l------------- 344 (756)
+.....+++.+....+++++|++++|+.+.....+..... +++.+ ..+
T Consensus 345 ~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vt~~~i~~~~~ 424 (939)
T 1q2l_A 345 VVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLA 424 (939)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHTTSCGGGTTTTTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhhcCCHHHHhcCchhhhccCHHHHHHHHH
Confidence 3444444444445789999999999997653222211000 00000 000
Q ss_pred -------------CCCCC-------------CCC-------------------CCC---------------CCCCCCccc
Q 004392 345 -------------PSLSL-------------RDI-------------------PKE---------------PIRVPTEVG 364 (756)
Q Consensus 345 -------------p~l~~-------------~di-------------------~~~---------------~~~~~~~~~ 364 (756)
|.... .++ |.. ....|....
T Consensus 425 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~ 504 (939)
T 1q2l_A 425 MMTPQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIPDDFSLIKSEKKYDHPELIV 504 (939)
T ss_dssp HCSGGGCEEEEECTTCCCCEECTTTCCEEEEEECCHHHHHHHHHHHHTCCCCCCCCCTTCCCCCCCCCCSSCCSSCEEEE
T ss_pred hcCHHHcEEEEEcCCCCCCcccceeCCeeeeeeCCHHHHHHHhccCccccccCCCCCcCCCcCcccccCcCCCCCCEEEE
Confidence 10000 000 000 001122234
Q ss_pred ccCCceEEEeecCC--C-cEEEEEEEeeCCC--CCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeec
Q 004392 365 DINGVKVLQHDLFT--N-DVLYTEVVFDMSS--LKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTS 439 (756)
Q Consensus 365 ~~nG~~v~~~~~~~--~-~~v~~~~~~~~~~--l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~ 439 (756)
+.||++|++++.+. . +...+.+.+..+. .+.+..+..+++..++. .|+.++ ++...+.+.+.++++ .
T Consensus 505 l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll~-~g~~~~---~~~~~l~G~~~~~~~-~--- 576 (939)
T 1q2l_A 505 DESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLAG-LALDQL---SNQASVGGISFSTNA-N--- 576 (939)
T ss_dssp EETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHHH-HHHHHH---HHHHHHTTEEEEEEE-S---
T ss_pred ECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHHH-HHHHHH---hhHHHHcCcEEEEee-C---
Confidence 67999999998763 2 2666666665543 33345567788888777 477655 455555555444433 2
Q ss_pred cCCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 004392 440 SIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (756)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (756)
+.+.+++++.+++++.+|+++.+++.+|.|++ ++++.++++.+..+.+...+++...+...+...+++..
T Consensus 577 ---------~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~-~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~~ 646 (939)
T 1q2l_A 577 ---------NGLMVNANGYTQRLPQLFQALLEGYFSYTATE-DQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPY 646 (939)
T ss_dssp ---------SEEEEEEEEESSSHHHHHHHHHHHHHHCCCCS-HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSSC
T ss_pred ---------CcEEEEEEcccHhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCCC
Confidence 45778888999999999999999999999996 88999999999999887666677777777777666421
Q ss_pred HHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 004392 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (756)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (756)
.+..+.++.+.. ...++|++||++++.+.+++++|+||++ .++++++++++++.|+..+.....
T Consensus 647 --------~~~~~~~~~l~~-------it~~~l~~f~~~~~~~~~~~~~vvGn~~-~~~~~~l~~~~~~~l~~~~~~~~~ 710 (939)
T 1q2l_A 647 --------FSRDERRKILPS-------ITLKEVLAYRDALKSGARPEFMVIGNMT-EAQATTLARDVQKQLGADGSEWCR 710 (939)
T ss_dssp --------CCHHHHHHHGGG-------CCHHHHHHHHHHHHTTCEEEEEEEESCC-HHHHHHHHHHHHHHHTCCCSCCCC
T ss_pred --------CCHHHHHHHHhc-------CCHHHHHHHHHHHHhhheEEEEEEcCCC-HHHHHHHHHHHHHHHccCCccccc
Confidence 122223333311 2358999999999999999999999997 578999999999988754321111
Q ss_pred cccccCCCC-ceEEEeCC--CeeEE-EeecccccCCCCcccHHHHHHHHhcCccchhhhhhc-CCCCCccccccCCCceE
Q 004392 600 KWKAHLPSA-NEAIVIPT--QVNYV-GKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFDSHSGVF 674 (756)
Q Consensus 600 ~~~~~~~~~-~~~~~~~~--~~~~~-~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRek-glaYg~~~~~~~~~g~~ 674 (756)
......+.+ ...+..+. ..+.+ ...++....+.++..++.+|..++ +++||++||++ |++|++++++....+..
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~-~s~lf~~LRek~gl~Y~v~s~~~~~~~~~ 789 (939)
T 1q2l_A 711 NKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIV-QPWFYNQLRTEEQLGYAVFAFPMSVGRQW 789 (939)
T ss_dssp CEEECCCSCEEEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHH-HHHHTHHHHTSCCSSSCEEEEEEEETTEE
T ss_pred cceEEeCCCceEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCceeeeeEeecCCee
Confidence 100111112 11222332 23333 344443322223344555555555 48999999986 99999999876332221
Q ss_pred --EEEEee-CCCh---hhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHh-CCCHHHHH
Q 004392 675 --SFLSYR-DPNL---LKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLL-GITEEERQ 746 (756)
Q Consensus 675 --~~~~~~-~~~~---~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~-g~~~~~~~ 746 (756)
.|.++. ..++ .++++.+.+.++.+.+ ++|++||+++|..+++++... .++...+.+.+...+. +...+..+
T Consensus 790 g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~~ 868 (939)
T 1q2l_A 790 GMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-AMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRD 868 (939)
T ss_dssp EEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChHH
Confidence 244443 3334 4555555555555554 699999999999999999875 5787877777666654 45566778
Q ss_pred HHHHHHhcCC
Q 004392 747 RRREEILSTR 756 (756)
Q Consensus 747 ~~~~~i~~vt 756 (756)
++.+.|.+||
T Consensus 869 ~~~~~i~~vT 878 (939)
T 1q2l_A 869 KIVAQIKLLT 878 (939)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHhcCC
Confidence 8888888776
No 5
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=9.9e-40 Score=356.15 Aligned_cols=365 Identities=11% Similarity=0.051 Sum_probs=294.0
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++.+.+..+.+++.+++++|+..+ +..+.+|++.++|+ .||++++..++.+.++..||.+|++++
T Consensus 6 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf-~Gt~~~~~~~~~~~l~~~G~~~na~t~---- 80 (406)
T 3eoq_A 6 ELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVF-KGPEDMDALAVNRAFDRMGAQYNAFTS---- 80 (406)
T ss_dssp ECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHT-TCCTTCCHHHHHHHHHHTTCEEEEEEC----
T ss_pred EcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCccceec----
Confidence 47899999999999889999999999998643 44566777788777 599999999999999999999999998
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
.+.+.|++++++++++.++++++|++ +|.|++ +.+...+...++++..... ++...+...+.+.+++++++
T Consensus 81 ------~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~-~~~~~ek~~v~~e~~~~~~-~p~~~~~~~~~~~~~~~~p~ 151 (406)
T 3eoq_A 81 ------EEATVYYGAVLPEFAYDLLGLFAKLL-RPALRE-EDFQTEKLVILEEIARYQD-RPGFMAYEWARARFFQGHPL 151 (406)
T ss_dssp ------SSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCH-HHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCGG
T ss_pred ------CCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCH-HHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCC
Confidence 68899999999999999999999999 999996 5555555555555554433 45667777777777777777
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
.... ++..+.++.+ +.++|++||+++|.|+|++|+|+||++ .+++.+.++++|+.||..+.... ..
T Consensus 152 ~~~~--~G~~~~i~~~----------t~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~-~~ 217 (406)
T 3eoq_A 152 GNSV--LGTRESITAL----------TREGMAAYHRRRYLPKNMVLAATGRVD-FDRLLAEAERLTEAWPEGEAERA-YP 217 (406)
T ss_dssp GCCS--SCCHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTCCCCCCCCC-CC
T ss_pred CCCC--cCCHHHHhhC----------CHHHHHHHHHHhCCccCEEEEEEcCCC-HHHHHHHHHHHhcCCCCCCCCCC-CC
Confidence 5443 3334455544 258999999999999999999999996 68899999999999986543211 11
Q ss_pred cccCCCCceEEEeCC-CeeEEEeecccccCCCCcccHHHHHHHHhc---CccchhhhhhcCCCCCccccccCC--CceEE
Q 004392 602 KAHLPSANEAIVIPT-QVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDSH--SGVFS 675 (756)
Q Consensus 602 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~~~--~g~~~ 675 (756)
..+.......+..+. ++.++.++++++++++++++++.|++.+|| +|+||++|||+|+||++++++... .|.|.
T Consensus 218 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~ 297 (406)
T 3eoq_A 218 PLTPAFGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFH 297 (406)
T ss_dssp CCCCCCEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEE
T ss_pred CCCCCCceEEEecCCccceEEEEEecCCCCCCchHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEE
Confidence 111112222333466 788999999999999999999999999998 789999999999999999987654 57788
Q ss_pred EEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 004392 676 FLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEERQRRREEIL 753 (756)
Q Consensus 676 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 753 (756)
+++..+| +..++++.+.+.++.+++.++|++||++||..+++++... .++...+......++.+.+.++.++++++|.
T Consensus 298 i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (406)
T 3eoq_A 298 AYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQ 377 (406)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHH
T ss_pred EEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 8887777 4578888888888889889999999999999999999876 4888887777766666656777888888888
Q ss_pred cCC
Q 004392 754 STR 756 (756)
Q Consensus 754 ~vt 756 (756)
+||
T Consensus 378 ~vt 380 (406)
T 3eoq_A 378 RVT 380 (406)
T ss_dssp HCC
T ss_pred hCC
Confidence 886
No 6
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=3.5e-39 Score=353.80 Aligned_cols=365 Identities=11% Similarity=0.065 Sum_probs=289.3
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++.+.++.+++++.++|++|+..+ +..+.++++.+++++ ||++++..++.+.++..||++|++++
T Consensus 6 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~-gt~~~~~~~~~~~l~~~G~~~na~t~---- 80 (421)
T 3hdi_A 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFK-GTNTRSAQEIAEFFDSIGGQVNAFTS---- 80 (421)
T ss_dssp ECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTS-BBSSSBHHHHHHHHHTTTSCEEEEEC----
T ss_pred EcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcC-CCCCCCHHHHHHHHHHhCCceeeeec----
Confidence 57899999999999999999999999998754 445667777887775 99999999999999999999999998
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
.+.+.|++++++++++++|+++++++.+|.|++ +.++..+...++++.... +++...+...+...+++++++
T Consensus 81 ------~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~ek~~v~~e~~~~~-~~p~~~~~~~~~~~~~~~~p~ 152 (421)
T 3hdi_A 81 ------KEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQK-EELEKERKVVFEEIKMVD-DTPDDIVHDLLSSATYGKHSL 152 (421)
T ss_dssp ------SSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCH-HHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTSGG
T ss_pred ------cceEEEEEEecHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHhcCCCCC
Confidence 688999999999999999999999999999996 555555555555555433 345667777777777777776
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
.... ++..+.++.+ ..++|++||+++|.|+|++|+|+||++ ++++++++++|+.||..+..... .
T Consensus 153 ~~~~--~G~~~~l~~i----------t~~~l~~f~~~~y~p~n~~l~v~Gd~~--~~~~~~v~~~f~~~~~~~~~~~~-~ 217 (421)
T 3hdi_A 153 GYPI--LGTVETLNSF----------NEGMLRHYMDRFYTGDYVVISVAGNVH--DELIDKIKETFSQVKPTTYNYQG-E 217 (421)
T ss_dssp GSCT--TCCHHHHHHC----------CHHHHHHHHHHHSSTTTEEEEEEESCC--HHHHHHHHHHTTSSCCCCCCCCC-C
T ss_pred CCCC--cCCHHHHHhC----------CHHHHHHHHHHhcCcccEEEEEEeCCC--HHHHHHHHHHhcCCCCCCCCCCC-C
Confidence 5433 3334455443 258899999999999999999999996 78999999999999865432111 1
Q ss_pred cccCCCCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhc---Cccchhhhhhc-CCCCCccccccCC--CceEE
Q 004392 602 KAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGAYGGFCDFDSH--SGVFS 675 (756)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRek-glaYg~~~~~~~~--~g~~~ 675 (756)
.+...........+.+++++.++++++++++++++++.|++.+|| +||||++|||+ |+|||+++++... .|.|.
T Consensus 218 ~~~~~~~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~ 297 (421)
T 3hdi_A 218 KPMFLPNRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLT 297 (421)
T ss_dssp CCCCCCCEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEE
T ss_pred CCCCCCceEEecCCCCceEEEEEEecCCCCCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEE
Confidence 111112222223356788999999998899999999999999998 58999999996 9999999887644 67777
Q ss_pred EEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 004392 676 FLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEERQRRREEIL 753 (756)
Q Consensus 676 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~ 753 (756)
++++++| +..++++.+.+.++.+++.++|++||++||..+++++... .++...+......++.+...+..++++++|.
T Consensus 298 i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 377 (421)
T 3hdi_A 298 IYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQIN 377 (421)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 7777777 5678888888889999999999999999999999999865 5777777666555554434556778888888
Q ss_pred cCC
Q 004392 754 STR 756 (756)
Q Consensus 754 ~vt 756 (756)
+||
T Consensus 378 ~vt 380 (421)
T 3hdi_A 378 AVQ 380 (421)
T ss_dssp HCC
T ss_pred cCC
Confidence 876
No 7
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1e-37 Score=343.69 Aligned_cols=368 Identities=13% Similarity=0.075 Sum_probs=296.6
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCCc-ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ-ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~-~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
.++.||++|++++.++.+++++.++|+.|+..+ +..+..+++.++++. ||++++..++.+.++..|+++|++++
T Consensus 17 ~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~-gt~~~~~~~l~~~l~~~g~~~~a~t~---- 91 (434)
T 3gwb_A 17 WSTAEGAKVLFVEARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLNE-GVAGKDVGAIAQGFEGLGADFGNGAY---- 91 (434)
T ss_dssp EECTTCCEEEEEECCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGGG-EETTEEHHHHHHHHHTTTCEEEEEEC----
T ss_pred EEcCCCeEEEEEECCCCCEEEEEEEEecccccCCcchhHHHHHHHHHhc-CcccCCHHHHHHHHHHhCCEEEeeec----
Confidence 467899999999999889999999999998655 344566777787775 99999999999999999999999997
Q ss_pred CCCCCCceEEEEEEEecccc--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhh
Q 004392 442 HGKEDPCCCMVVRGKAMAGQ--AEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAG 519 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~--l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 519 (756)
.+.+.+++++++++ ++.+++++.+++.+|.|++ ++++..+...++++.+. .+++...+...+.+.+++++
T Consensus 92 ------~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~~~~~~~e~~~~-~~~p~~~~~~~~~~~~~~~~ 163 (434)
T 3gwb_A 92 ------KDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPA-DSLARIKNQMLAGFEYQ-KQNPGKLASLELMKRLYGTH 163 (434)
T ss_dssp ------SSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCH-HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTS
T ss_pred ------CCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCCC
Confidence 68899999999988 9999999999999999996 77777777777777766 44667778777777776666
Q ss_pred HHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccc
Q 004392 520 WISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERV 599 (756)
Q Consensus 520 ~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~ 599 (756)
++.....|. .+.++.+ ..++|++||+++|+|+|++++|+||++ .+++.++++++|+.||..+.....
T Consensus 164 ~~~~~~~G~--~~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~~~~~~~l~~~~~~~~~ 230 (434)
T 3gwb_A 164 PYAHASDGD--AKSIPPI----------TLAQLKAFHAKAYAAGNVVIALVGDLS-RSDAEAIAAQVSAALPKGPALAKI 230 (434)
T ss_dssp TTSSCTTCC--TTTTTTC----------CHHHHHHHHHHHSCGGGEEEEEEESCC-HHHHHHHHHHHHHHSCCCCCCCCC
T ss_pred CCCCCCCCC--HHHHHhC----------CHHHHHHHHHHhcCcCCeEEEEEcCCC-HHHHHHHHHHHHhcCCCCCCCCCC
Confidence 654433332 2222222 357899999999999999999999997 688999999999999876432111
Q ss_pred cccccCCCCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhc----Cccchhhhhhc-CCCCCccccccCC--Cc
Q 004392 600 KWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS----NVWLWDRVRVS-GGAYGGFCDFDSH--SG 672 (756)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg----~s~L~~~iRek-glaYg~~~~~~~~--~g 672 (756)
....+.......+..+..++++.++++++++++++++++.|++.+|| +|+||++||++ |+||++++++... .|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g 310 (434)
T 3gwb_A 231 EQPAEPKASIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARG 310 (434)
T ss_dssp CCCCCCCCEEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCC
T ss_pred CCCCCCCCceEEEeCCCCceeEEecCcCCCCCCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCce
Confidence 11111112223344567788999999988899999999999999997 46999999997 9999999998754 47
Q ss_pred eEEEEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHHHHHHHH
Q 004392 673 VFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEERQRRRE 750 (756)
Q Consensus 673 ~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 750 (756)
.+.+++.++| +..++++.+.+.++.+++.++|++||++||..+++++... .++...+......++.|.+.++.+++++
T Consensus 311 ~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (434)
T 3gwb_A 311 PFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGFYNLPLSYLEDFMR 390 (434)
T ss_dssp EEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred eEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHcCCCccHHHHHHH
Confidence 7777777777 4578888888888888888999999999999999999876 4888888888877889989889999999
Q ss_pred HHhcCC
Q 004392 751 EILSTR 756 (756)
Q Consensus 751 ~i~~vt 756 (756)
.|.+||
T Consensus 391 ~i~~vt 396 (434)
T 3gwb_A 391 QSQELT 396 (434)
T ss_dssp HHHHCC
T ss_pred HHHhCC
Confidence 999887
No 8
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=3.5e-37 Score=340.29 Aligned_cols=366 Identities=8% Similarity=-0.007 Sum_probs=288.6
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++++.+.++++++.++|++|+..+ +..+.++++.++++ .||++++..++.+.++..||++|++++
T Consensus 11 ~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~-~Gt~~~~~~~l~~~l~~~g~~~na~t~---- 85 (443)
T 1hr6_B 11 KLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAF-KGTQNRPQQGIELEIENIGSHLNAYTS---- 85 (443)
T ss_dssp ECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTT-SBBSSCBHHHHHHHHHHTTCEEEEEEC----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhh-cCCCCCCHHHHHHHHHHcCCeEEEEEC----
Confidence 57899999999988888999999999998754 34566777788777 699999999999999999999999997
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
.+.+.|++++++++++++|+++++++.+|.|++ +.++..+...++++... .++++.++...+.+.+++++++
T Consensus 86 ------~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~e~~~v~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (443)
T 1hr6_B 86 ------RENTVYYAKSLQEDIPKAVDILSDILTKSVLDN-SAIERERDVIIRESEEV-DKMYDEVVFDHLHEITYKDQPL 157 (443)
T ss_dssp ------SSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCH-HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTSGG
T ss_pred ------CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhh-hCChHHHHHHHHHHHhcCCCCC
Confidence 678999999999999999999999999999996 44444444444444432 2346777888888877877776
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
.... ++..+.++.+ ..++|++||+++|.|+|++|+|+||++ .+++++.++++|+.||........+.
T Consensus 158 ~~~~--~g~~~~i~~~----------~~~~l~~f~~~~y~~~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~~~ 224 (443)
T 1hr6_B 158 GRTI--LGPIKNIKSI----------TRTDLKDYITKNYKGDRMVLAGAGAVD-HEKLVQYAQKYFGHVPKSESPVPLGS 224 (443)
T ss_dssp GSCS--SCCHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCCCSSCCCTTS
T ss_pred CCCC--cCCHHHHhhC----------CHHHHHHHHHhcCcCCCEEEEEEcCCC-HHHHHHHHHHHhcCCCCCCCCCCccc
Confidence 4433 3344555543 257899999999999999999999997 68899999999999986543211111
Q ss_pred ---cccCCCCceEEE-e-CCCeeEEEeecccccCCCCcccHHHHHHHHhc------------Cccchhhhhhc-CCCCCc
Q 004392 602 ---KAHLPSANEAIV-I-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVS-GGAYGG 663 (756)
Q Consensus 602 ---~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~iRek-glaYg~ 663 (756)
..+......... . +.+++++.++++++++++++++++.|++.+|| +||||++|||+ |+|||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~ 304 (443)
T 1hr6_B 225 PRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSY 304 (443)
T ss_dssp CCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEE
T ss_pred ccCCCCCCCCCeEEeccCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEE
Confidence 111111222222 2 35788999999998899999999999999995 38999999975 999999
Q ss_pred cccccC--CCceEEEEEeeC--C-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHH-
Q 004392 664 FCDFDS--HSGVFSFLSYRD--P-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRH- 736 (756)
Q Consensus 664 ~~~~~~--~~g~~~~~~~~~--~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~- 736 (756)
++++.. ..|.+.++++++ | +..++++.+.++++.++++++|++||++||..+++++... .++...+......+
T Consensus 305 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (443)
T 1hr6_B 305 MSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVV 384 (443)
T ss_dssp EEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred EeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 887754 468888888888 7 6789999999999999988999999999999999999877 47776666555544
Q ss_pred HhCCCHHHHHHHHHHHhcCC
Q 004392 737 LLGITEEERQRRREEILSTR 756 (756)
Q Consensus 737 ~~g~~~~~~~~~~~~i~~vt 756 (756)
..|.+.+ .+++++.|.+||
T Consensus 385 ~~g~~~~-~~~~~~~i~~vt 403 (443)
T 1hr6_B 385 TTGKRLS-PEEVFEQVDKIT 403 (443)
T ss_dssp HHSSCCC-HHHHHHHHHTCC
T ss_pred hcCCcCC-HHHHHHHHHhCC
Confidence 4676554 577888888776
No 9
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=1.4e-37 Score=343.51 Aligned_cols=364 Identities=10% Similarity=-0.051 Sum_probs=284.7
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++.+.+ ++++++.++|++|+..+ +..++++++.++++ .||++++..++.+.++..||++|++++
T Consensus 18 ~L~NGl~v~~~~~~-~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf-~GT~~~~~~~~~~~l~~~G~~~na~t~---- 91 (446)
T 1pp9_A 18 QLDNGLRVASEQSS-QPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAF-KGTKNRPGNALEKEVESMGAHLNAYST---- 91 (446)
T ss_dssp ECTTCCEEEEEECS-CSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTT-SCBSSSTTTHHHHHHHHTTCEEEEEEC----
T ss_pred ECCCCCEEEEEeCC-CCEEEEEEEEccccCCCCCCCCcHHHHHHHHhc-CCCCCCCHHHHHHHHHHcCCEEEEEEc----
Confidence 57899999998766 47999999999998754 34566777788777 599999999999999999999999997
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
.+.+.|+++++++++++++++++|++.+|.|++ +.+++.+...++++... .+++..++...+.+.+++++++
T Consensus 92 ------~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~ek~~v~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (446)
T 1pp9_A 92 ------REHTAYYIKALSKDLPKAVELLADIVQNCSLED-SQIEKERDVILQELQEN-DTSMRDVVFNYLHATAFQGTPL 163 (446)
T ss_dssp ------SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCH-HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTSGG
T ss_pred ------CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhh-hcCHHHHHHHHHHHHhcCCCCC
Confidence 678999999999999999999999999999996 43433333333333332 2345677888887777777777
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
.... ++..+.++.+ +.++|++||+++|+|+|++|+|+||++ .+++.+.++++|+.|+..+......+
T Consensus 164 ~~~~--~G~~~~l~~~----------~~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~~~~~~ 230 (446)
T 1pp9_A 164 AQSV--EGPSENVRKL----------SRADLTEYLSRHYKAPRMVLAAAGGLE-HRQLLDLAQKHFSGLSGTYDEDAVPT 230 (446)
T ss_dssp GSCS--SCCHHHHHHC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTSCSCCCSSCCCC
T ss_pred CCCC--cCCHHHHHhC----------CHHHHHHHHHhccCCCCEEEEEEcCCC-HHHHHHHHHHHhccCCCCCCCCcccc
Confidence 5433 3334455443 358999999999999999999999997 68899999999999986543211111
Q ss_pred c-ccCCCCceEE-Ee-CCCeeEEEeecccccCCCCcccHHHHHHHHhc------------CccchhhhhhcCCCCCcccc
Q 004392 602 K-AHLPSANEAI-VI-PTQVNYVGKAANIFETGYKLNGSAYVISKHIS------------NVWLWDRVRVSGGAYGGFCD 666 (756)
Q Consensus 602 ~-~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg------------~s~L~~~iRekglaYg~~~~ 666 (756)
. .+.....+.. .. +.+++++.++++++++++++++++.|++.+|| +||||++||++|+|||++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~ 310 (446)
T 1pp9_A 231 LSPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTF 310 (446)
T ss_dssp CCCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEE
T ss_pred CCCCCCCCceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEe
Confidence 1 1111122222 22 35788999999999899999999999999996 68999999999999999887
Q ss_pred ccC--CCceEEEEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHH-HhCCC
Q 004392 667 FDS--HSGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRH-LLGIT 741 (756)
Q Consensus 667 ~~~--~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~-~~g~~ 741 (756)
+.. ..|.+.++++++| +..++++.+.+.++.+++ ++|++||++||..+++++... .++...+......+ +.|.+
T Consensus 311 ~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 389 (446)
T 1pp9_A 311 NICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCT-SATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRR 389 (446)
T ss_dssp EEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSC
T ss_pred cccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 753 4688888988988 678999999999999887 499999999999999999876 57777776655444 56765
Q ss_pred HHHHHHHHHHHhcCC
Q 004392 742 EEERQRRREEILSTR 756 (756)
Q Consensus 742 ~~~~~~~~~~i~~vt 756 (756)
.+ .++++++|.+||
T Consensus 390 ~~-~~~~~~~i~~vt 403 (446)
T 1pp9_A 390 IP-LAEWESRIAEVD 403 (446)
T ss_dssp CC-HHHHHHHHHTCC
T ss_pred CC-HHHHHHHHHcCC
Confidence 44 577788888776
No 10
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=1.3e-36 Score=335.64 Aligned_cols=368 Identities=11% Similarity=0.077 Sum_probs=292.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++.+.+..+.+.+.++++.|+..+ +..+.++++.++++ .||++++..++.+.++.+||.+|++++
T Consensus 11 ~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf-~Gt~~~~~~~l~~~l~~~g~~~na~t~---- 85 (445)
T 3ami_A 11 TLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMF-KGTKDVGPGEFSKRVAAMGGRDNAFTT---- 85 (445)
T ss_dssp ECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTT-SCBSSSCTTHHHHHHHHTTCEEEEEEC----
T ss_pred ECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhc-CCCCCCCHHHHHHHHHHhCCccccccC----
Confidence 57899999999988889999999999998643 34556677777777 699999999999999999999999998
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
.+.+.+++++++++++.+|+++++++.+|.|++ +.++..+...++++.....+++...+...+...+++++++
T Consensus 86 ------~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~ 158 (445)
T 3ami_A 86 ------RDYTAYYQQVPSSRLSDVMGLEADRMANLVVDD-ELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPY 158 (445)
T ss_dssp ------SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGG
T ss_pred ------CCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCC
Confidence 688999999999999999999999999999996 6666666666666664444456777777777777777777
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
..... +..+.++.+ ..++|++||+++|.|+|++|+|+||++ .++++++++++|+.||..+.......
T Consensus 159 ~~~~~--G~~e~l~~i----------t~~~l~~f~~~~y~p~n~~l~vvGd~d-~~~~~~~v~~~f~~~~~~~~~~~~~~ 225 (445)
T 3ami_A 159 RVPVI--GWMNDIQNM----------TAQDVRDWYKRWYGPNNATVVVVGDVE-HEAVFRLAEQTYGKLARVEAPARKQQ 225 (445)
T ss_dssp GSCTT--CCHHHHHHC----------CHHHHHHHHHHHCSGGGEEEEEEESCC-HHHHHHHHHHTGGGSCCCCCCCCCCC
T ss_pred CCCCC--CCHHHHhhC----------CHHHHHHHHHHhCCccceEEEEEcCCC-HHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 54332 334455443 258899999999999999999999997 68899999999999986542211111
Q ss_pred cccCCCCceEE--EeCCCeeEEEeeccccc---CC-CCcccHHHHHHHHhc---Cccchhhhhh-cCCCCCccccccC--
Q 004392 602 KAHLPSANEAI--VIPTQVNYVGKAANIFE---TG-YKLNGSAYVISKHIS---NVWLWDRVRV-SGGAYGGFCDFDS-- 669 (756)
Q Consensus 602 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~-~~d~~al~vl~~iLg---~s~L~~~iRe-kglaYg~~~~~~~-- 669 (756)
..+...+...+ ..+.+++++.++|+++. ++ +++++++.|++.||| +|||+++||+ +|+||++++++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~ 305 (445)
T 3ami_A 226 GEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLS 305 (445)
T ss_dssp CCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCC
T ss_pred CCCCCCCceEEEEecCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccc
Confidence 11111222222 22456778889998887 77 889999999999998 5899999996 5999999988762
Q ss_pred -C-CceEEEEEeeCCC--hhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHH
Q 004392 670 -H-SGVFSFLSYRDPN--LLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEE 744 (756)
Q Consensus 670 -~-~g~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 744 (756)
. .|.|.+++...|. .+++++.+.+.++.+++.++|++||+++|..+++++... .++...+......++.|.+.++
T Consensus 306 ~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 385 (445)
T 3ami_A 306 RGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRD 385 (445)
T ss_dssp SSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTH
T ss_pred cCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHH
Confidence 3 5777777666663 578888899999999989999999999999999999866 4777777777777778888888
Q ss_pred HHHHHHHHhcCC
Q 004392 745 RQRRREEILSTR 756 (756)
Q Consensus 745 ~~~~~~~i~~vt 756 (756)
..++.+.|.+||
T Consensus 386 ~~~~~~~i~~vt 397 (445)
T 3ami_A 386 DDRFYQQLRSVT 397 (445)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHHcCC
Confidence 999999998886
No 11
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=2.8e-36 Score=331.04 Aligned_cols=365 Identities=13% Similarity=0.102 Sum_probs=289.8
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCC--cccccChHHHHHHhhhcCCC----CCCHHHHHHHHhhcccceEEee
Q 004392 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLK--QELLPLIPLFCQSLKEMGTK----DLSFVQLDQLIGRKTGGISVYP 436 (756)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~--~~~~~~~~l~~~~l~~~Gt~----~~~~~el~~~i~~~~g~~~~~~ 436 (756)
.++.||++|++.+.++.+.+++.++|+.|+.. ++..+.++++.+++++ ||+ +++..++.+.++..|+++++++
T Consensus 7 ~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~-Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t 85 (424)
T 3amj_B 7 WTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDA-GTGSGKSALDENAIADRLADIGARLGGGA 85 (424)
T ss_dssp EECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGG-EECSTTSCEEHHHHHHHHHHTTCEEEEEE
T ss_pred EECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHh-ccCCCccCCCHHHHHHHHHHhCCEEEeec
Confidence 35789999999999988999999999999863 3455778888888885 999 9999999999999999999998
Q ss_pred eeccCCCCCCCceEEEEEEEeccccH--HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhc
Q 004392 437 FTSSIHGKEDPCCCMVVRGKAMAGQA--EDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAK 514 (756)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 514 (756)
+ .+.+.++++++++++ +.+|+++.+++.+|.|++ +.++..+...++++.... +++...+...+.+.
T Consensus 86 ~----------~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~e~~~v~~e~~~~~-~~p~~~~~~~~~~~ 153 (424)
T 3amj_B 86 E----------ADRASFSLRVLSSPAERNSALTILRDILAHPTFPA-PVLERERARAIAGLREAQ-TQPGSILGRRFTEL 153 (424)
T ss_dssp C----------SSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHHT-TSHHHHHHHHHHHH
T ss_pred C----------CCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHh
Confidence 7 578999999999998 999999999999999996 556655555555555443 35677777777777
Q ss_pred cChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCC
Q 004392 515 LNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNS 594 (756)
Q Consensus 515 ~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~ 594 (756)
+++++++.... ..+.++.+ ..++|++||+++|.|+|++++|+||++ .++++++++++|+.||..+
T Consensus 154 ~~~~~p~~~~~----~~~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~Gd~~-~~~~~~~~~~~f~~~~~~~ 218 (424)
T 3amj_B 154 AYGKHPYGHVS----SVATLQKI----------SRDQLVSFHRTHYVARTAVVTLVGDIT-RAEAETIAQQLTADLPAGA 218 (424)
T ss_dssp HHTTSGGGCCC----CHHHHHHC----------CHHHHHHHHHHHSCTTSCEEEEEESCC-HHHHHHHHHHTTTTSCCCC
T ss_pred cCCCCCCCCCC----CHHHHHhC----------CHHHHHHHHHHhcCCCceEEEEEeCCC-HHHHHHHHHHHHhcCCCCC
Confidence 76666653322 23333332 358999999999999999999999997 6889999999999998654
Q ss_pred CcccccccccCCCCce-EEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhcC----ccchhhhhhc-CCCCCcccccc
Q 004392 595 PVERVKWKAHLPSANE-AIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISN----VWLWDRVRVS-GGAYGGFCDFD 668 (756)
Q Consensus 595 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~----s~L~~~iRek-glaYg~~~~~~ 668 (756)
...+... ++.+.... .+..+.+++++.++++++++++++++++.|++.+||+ ||||++||++ |+||++++++.
T Consensus 219 ~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~ 297 (424)
T 3amj_B 219 TLPPLPD-PAMPRATVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFS 297 (424)
T ss_dssp CCCCCCC-CCCCCCEEEEEECSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEEC
T ss_pred CCCCCCC-CCCCCCceEEeeCCCCccEEEeeccCCCCCCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeec
Confidence 3211111 11112212 2223567788889999888899999999999999983 5999999985 99999998876
Q ss_pred CC--CceEEEEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHH
Q 004392 669 SH--SGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEE 744 (756)
Q Consensus 669 ~~--~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 744 (756)
.. .|.+.++++++| +..++++.+.+.++.+++.++|++||+++|..+++++... .++...+......++.|.+.++
T Consensus 298 ~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (424)
T 3amj_B 298 PQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGYYGLPLDY 377 (424)
T ss_dssp CBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHHTTCCTTT
T ss_pred cCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHHcCCChhH
Confidence 54 477777777777 5678888888888888888999999999999999999864 5888877777766777877777
Q ss_pred HHHHHHHHhcCC
Q 004392 745 RQRRREEILSTR 756 (756)
Q Consensus 745 ~~~~~~~i~~vt 756 (756)
++++.+.|.+||
T Consensus 378 ~~~~~~~i~~vt 389 (424)
T 3amj_B 378 LDHYTERVQAVT 389 (424)
T ss_dssp TTSHHHHHHTCC
T ss_pred HHHHHHHHHcCC
Confidence 788888888776
No 12
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=8.7e-35 Score=319.31 Aligned_cols=367 Identities=11% Similarity=0.033 Sum_probs=288.4
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCC-CHHHHHHHHhhc-ccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDL-SFVQLDQLIGRK-TGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~-~~~el~~~i~~~-~g~~~~~~~~~~~ 441 (756)
++.||++|++++.++.+.+++.++|+.|...+ ..+.++++.++|+ .||+++ +..++.+.++.. |++++++++.
T Consensus 7 ~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e-~~g~a~ll~~~l~-~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~--- 81 (425)
T 3d3y_A 7 QLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHE-TITKRTLLSSLME-TNSLNYPNQVKLSERLAELYGASFGIGVSK--- 81 (425)
T ss_dssp EEETTEEEEEEECSSCSEEEEEEEEEEECCTT-THHHHHHHHHHHH-HCCSSSCSHHHHHHHHHHTTSCEEEEEEEE---
T ss_pred eccCCcEEEEEecCccceEEEEEEEeCCCCcc-chhHHHHHHHHHH-hhhhcCCCHHHHHHHHHHHhCceEeeeeee---
Confidence 47899999999998889999999999887543 3567888899888 699999 889999999997 9999999872
Q ss_pred CCCCCCceEEEEEEEeccc-------cHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHHHHHHhhhhccCcHHHHHH
Q 004392 442 HGKEDPCCCMVVRGKAMAG-------QAEDLFNLFNCVLQEVQ-----LTDQQRFKQFVSQSKARMENRLRGSGHGIAAA 509 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~-------~l~~~l~ll~~~l~~p~-----f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 509 (756)
+.....+.++++++++ +++.+++++.+++.+|. |++ +.++..+...++++.... +.++.++..
T Consensus 82 ---~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~-~~~~~~k~~v~~e~~~~~-~~p~~~~~~ 156 (425)
T 3d3y_A 82 ---KGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEA-ETFQREKENLKAYLESIV-EDKQTYASL 156 (425)
T ss_dssp ---ETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECH-HHHHHHHHHHHHHHHHHH-HSHHHHHHH
T ss_pred ---cCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCH-HHHHHHHHHHHHHHHHHh-hCHHHHHHH
Confidence 1123447899999987 69999999999999999 996 555555555555555433 346777877
Q ss_pred HHHhccC-hhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHh
Q 004392 510 RMDAKLN-TAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLD 588 (756)
Q Consensus 510 ~~~~~~~-~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~ 588 (756)
.+.+.++ +++++... .++..+.++.+ ..++|++||+++|.|+|++++|+||++ .+++++++ ++|+
T Consensus 157 ~~~~~~~~~~~~~~~~--~~g~~~~l~~~----------t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~-~~~~ 222 (425)
T 3d3y_A 157 ALQSVYFNQSEDQKIP--SFGTVAALAEE----------TAASLAAYYQKMLAEDQVDIFVLGDVN-EAELVPLF-KQLP 222 (425)
T ss_dssp HHHHHHTTTCTTTTSC--TTCCHHHHHHC----------CHHHHHHHHHHHHHHSEEEEEEEESCC-HHHHHHHH-HTSC
T ss_pred HHHHHhccCCCCccCC--CCCCHHHHHhC----------CHHHHHHHHHHHHhcCCeEEEEECCCC-HHHHHHHH-HhCC
Confidence 7777777 66665322 23334444443 257899999999999999999999997 68899999 9999
Q ss_pred cCCCCCCcccc-cccccCCCCc-eEEE-eCCCeeEEEeecccc-cCCCCcccHHHHHHHHhc---Cccchhhhhhc-CCC
Q 004392 589 MLPTNSPVERV-KWKAHLPSAN-EAIV-IPTQVNYVGKAANIF-ETGYKLNGSAYVISKHIS---NVWLWDRVRVS-GGA 660 (756)
Q Consensus 589 ~l~~~~~~~~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~d~~al~vl~~iLg---~s~L~~~iRek-gla 660 (756)
||..+..... .+..+..... ..+. .+.+++++.++++++ ++++++++++.|++.||| +|+||++|||+ |+|
T Consensus 223 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~gla 301 (425)
T 3d3y_A 223 -FTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLA 301 (425)
T ss_dssp -CCCCCCCCCCSCCCCCCCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCC
T ss_pred -CCccccccccccccccCCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeE
Confidence 9865432111 1111111112 2222 256788899999874 688999999999999998 78999999996 999
Q ss_pred CCccccccCCCceEEEEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHh
Q 004392 661 YGGFCDFDSHSGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLL 738 (756)
Q Consensus 661 Yg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~ 738 (756)
|++++++....|.+.++++++| +..++++.+.++++.+++.++|++||+++|..+++++... .++...+......++.
T Consensus 302 Y~v~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (425)
T 3d3y_A 302 YYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELM 381 (425)
T ss_dssp SEEEEEEETTTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred EEEeccccccCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhh
Confidence 9999988877899999998888 6788999999999999988999999999999999999864 5888888877777777
Q ss_pred -CCCHHHHHHHHHHHhcCC
Q 004392 739 -GITEEERQRRREEILSTR 756 (756)
Q Consensus 739 -g~~~~~~~~~~~~i~~vt 756 (756)
|.+. +.+++++.|.+||
T Consensus 382 ~g~~~-~~~~~~~~i~~vt 399 (425)
T 3d3y_A 382 PQTML-TAEEWIARINAVT 399 (425)
T ss_dssp TTSCC-CHHHHHHHHHHCC
T ss_pred cCCCC-CHHHHHHHHHhCC
Confidence 7655 4788899988876
No 13
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=3.9e-35 Score=326.36 Aligned_cols=363 Identities=9% Similarity=0.021 Sum_probs=280.3
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++.+.+. +.+++.+++++|+..+ +..+.++++.+++++ ||++++..++.+.++..|+.+|++++
T Consensus 10 ~L~NGl~v~~~~~~~-~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~-Gt~~~~~~~~~~~le~~G~~~na~t~---- 83 (475)
T 1hr6_A 10 SLANGLKVATSNTPG-HFSALGLYIDAGSRFEGRNLKGCTHILDRLAFK-STEHVEGRAMAETLELLGGNYQCTSS---- 83 (475)
T ss_dssp ECTTSCEEEEESCCC-SSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTS-CBTTBCHHHHHHHHHHTTSCEEEEEC----
T ss_pred ECCCCCEEEEEeCCC-CEEEEEEEEccccCCCCCCCCcHHHHHHHHHhC-CCCCCCHHHHHHHHHHcCCEEEEEEc----
Confidence 578999999887665 7999999999998754 444566777787775 99999999999999999999999997
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHH
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWI 521 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 521 (756)
.+.+.|++++++++++.+|++|+|++.+|.|++ +.++..+...++++... .+.+...+...+...++++++|
T Consensus 84 ------~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~er~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~~~~ 155 (475)
T 1hr6_A 84 ------RENLMYQASVFNQDVGKMLQLMSETVRFPKITE-QELQEQKLSAEYEIDEV-WMKPELVLPELLHTAAYSGETL 155 (475)
T ss_dssp ------SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTSGG
T ss_pred ------cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHhcCCCCC
Confidence 688999999999999999999999999999996 55555555555555442 2456778888888887877777
Q ss_pred HHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcccccc
Q 004392 522 SEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKW 601 (756)
Q Consensus 522 ~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 601 (756)
.....| ..+.++.+ ..++|++||+++|.|+|++|+|+| ++ .++++++++++|+.||..+..... .
T Consensus 156 ~~~~~G--~~~~l~~i----------t~~~l~~f~~~~y~p~n~~l~v~G-~d-~~~~~~~i~~~f~~~~~~~~~~~~-~ 220 (475)
T 1hr6_A 156 GSPLIC--PRGLIPSI----------SKYYLLDYRNKFYTPENTVAAFVG-VP-HEKALELTGKYLGDWQSTHPPITK-K 220 (475)
T ss_dssp GSCSSC--CGGGGGGC----------CHHHHHHHHHHHCCGGGEEEEEES-SC-HHHHHHHHHHHHTTCCCCCCCCCC-C
T ss_pred CCCCcC--CHHHHhhc----------CHHHHHHHHHHhCCcccEEEEEeC-CC-HHHHHHHHHHHhccCCCCCCCCCC-C
Confidence 554433 23333332 257899999999999999999999 96 688999999999999864432111 0
Q ss_pred cccCCCCceEEE------eCCCeeEEEeecccccCCCCcccHHHHHHHHhcC--------------ccchhhhhhc-CCC
Q 004392 602 KAHLPSANEAIV------IPTQVNYVGKAANIFETGYKLNGSAYVISKHISN--------------VWLWDRVRVS-GGA 660 (756)
Q Consensus 602 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~--------------s~L~~~iRek-gla 660 (756)
..........+. .+.+++++.++++++++++++++++.|++.|||. |+||++||++ |+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~ 300 (475)
T 1hr6_A 221 VAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFV 300 (475)
T ss_dssp CCCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSE
T ss_pred CCCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCe
Confidence 111111111222 2345778889999888889999999999999982 8999999996 999
Q ss_pred CCccccccC--CCceEEEEEeeCC-ChhhHHHHHHhHHHHHhc---CCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHH
Q 004392 661 YGGFCDFDS--HSGVFSFLSYRDP-NLLKTLDIYDGTVDFLRE---LEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSL 733 (756)
Q Consensus 661 Yg~~~~~~~--~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~---~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~ 733 (756)
|++++++.. ..|.+.++++++| +..++++.+.+.++.+.+ +++|++||++||..+++++... .++...+....
T Consensus 301 y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~ 380 (475)
T 1hr6_A 301 ENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMG 380 (475)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred eEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999988764 4688888888888 567888888888888877 7899999999999999999764 57777666655
Q ss_pred HHH-HhCCCHHHHHHHHHHHhcCC
Q 004392 734 LRH-LLGITEEERQRRREEILSTR 756 (756)
Q Consensus 734 ~~~-~~g~~~~~~~~~~~~i~~vt 756 (756)
..+ ..|...+ .+++.+.|.+||
T Consensus 381 ~~~~~~g~~~~-~~~~~~~i~~vt 403 (475)
T 1hr6_A 381 RQVLMHGRKIP-VNEMISKIEDLK 403 (475)
T ss_dssp HHHHHHSCCCC-HHHHHHHHHTCC
T ss_pred HHHHhcCCCCC-HHHHHHHHHcCC
Confidence 533 4565443 567777777775
No 14
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=6.9e-35 Score=321.53 Aligned_cols=362 Identities=10% Similarity=-0.000 Sum_probs=281.6
Q ss_pred ccccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeecc
Q 004392 363 VGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 363 ~~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~ 440 (756)
.++.||++|++++. ..+.+++.++|+.|+..+ +..+..+++.++++ .||++++..++.+.++..|+++|++++
T Consensus 27 ~~L~nGl~v~~~~~-~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~-~gt~~~~~~~~~~~l~~~G~~~na~t~--- 101 (439)
T 1pp9_B 27 TRLPNGLVIASLEN-YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASS-LTTKGASSFKITRGIEAVGGKLSVTST--- 101 (439)
T ss_dssp EECTTSCEEEEECC-CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTT-SCBSSSCHHHHHHHHHHTTCEEEEEEC---
T ss_pred EECCCCcEEEEEeC-CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhc-CCCCcCCHHHHHHHHHHhCCeEEEEec---
Confidence 35789999999998 789999999999997643 34556777788776 599999999999999999999999997
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+.+.+++++++++++.+|+++.+++.+|.|++ +.++..+...++++... .+.+...+...+...+++ ++
T Consensus 102 -------~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~-~~ 171 (439)
T 1pp9_B 102 -------RENMAYTVECLRDDVDILMEFLLNVTTAPEFRR-WEVAALQPQLRIDKAVA-LQNPQAHVIENLHAAAYR-NA 171 (439)
T ss_dssp -------SSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCH-HHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHBS-SG
T ss_pred -------ceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHhc-CC
Confidence 688999999999999999999999999999996 55555555555555443 335677777777776666 66
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
+.....|. .+.++.+ ..++|++||+++|.|+|++++|+|| + .+++.++++++|+ ||..+....
T Consensus 172 ~~~~~~g~--~~~l~~i----------t~~~l~~f~~~~y~~~~~~l~v~G~-~-~~~~~~~~~~~~~-~~~~~~~~~-- 234 (439)
T 1pp9_B 172 LANSLYCP--DYRIGKV----------TPVELHDYVQNHFTSARMALIGLGV-S-HPVLKQVAEQFLN-IRGGLGLSG-- 234 (439)
T ss_dssp GGSCSSCC--GGGTTTC----------CHHHHHHHHHHHCSGGGEEEEEESS-C-HHHHHHHHHHHCC-CCCCC-CCC--
T ss_pred CCCCccCC--HHHHhhc----------CHHHHHHHHHHhCCCCceEEEEeCC-C-HHHHHHHHHHHhC-CCCCCCCCC--
Confidence 54322222 2222222 2578999999999999999999999 6 6889999999998 875443211
Q ss_pred ccccCCCCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhc-----------Cccchhhhhhc-CCCCCcccccc
Q 004392 601 WKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHIS-----------NVWLWDRVRVS-GGAYGGFCDFD 668 (756)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg-----------~s~L~~~iRek-glaYg~~~~~~ 668 (756)
...+.......+..+.+++++.++++++++++++++++.|++.+|| +|+||++||++ |+||++++++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~ 314 (439)
T 1pp9_B 235 AKAKYHGGEIREQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNA 314 (439)
T ss_dssp CCCCBCCEEEEEECCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEE
T ss_pred CCCCCcCCeEEecCCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeec
Confidence 1111112222334466788899999988889999999999999997 38999999986 99999998875
Q ss_pred C--CCceEEEEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHH
Q 004392 669 S--HSGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEE 744 (756)
Q Consensus 669 ~--~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~ 744 (756)
. ..|.+.++++++| +..++++.+.+.++.+++.++|++||+++|..+++++... .++...+...+..++.+...+.
T Consensus 315 ~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (439)
T 1pp9_B 315 SYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTP 394 (439)
T ss_dssp EETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCC
T ss_pred cccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCC
Confidence 3 4688888888888 5678888888888888888999999999999999998864 5787777766665554324445
Q ss_pred HHHHHHHHhcCC
Q 004392 745 RQRRREEILSTR 756 (756)
Q Consensus 745 ~~~~~~~i~~vt 756 (756)
.+++.+.|.+||
T Consensus 395 ~~~~~~~i~~vt 406 (439)
T 1pp9_B 395 PSTVLQQIDAVA 406 (439)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHHhcCC
Confidence 778888888776
No 15
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=2.6e-33 Score=308.10 Aligned_cols=356 Identities=11% Similarity=-0.005 Sum_probs=274.8
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~ 441 (756)
++.||++|++.+.+..+.+++.++|++|+..+ +..+.++++.+++++ ||++ ..++..|+++|++++
T Consensus 5 ~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~-gt~~-------~~~~~~G~~~na~t~---- 72 (431)
T 3cx5_A 5 QLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLS-KENS-------AVAAKEGLALSSNIS---- 72 (431)
T ss_dssp EEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTS-HHHH-------HHHHHTTCEEEEEEC----
T ss_pred ECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhc-CCCc-------ccHHHcCCeeeeeec----
Confidence 47899999999999889999999999998643 456778888888875 8754 246889999999997
Q ss_pred CCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHhhhhccCc-HHHHHHHHHhccCh
Q 004392 442 HGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQ---LTDQQRFKQFVSQSKARMENRLRGSG-HGIAAARMDAKLNT 517 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~---f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~ 517 (756)
.+.+.+++++++++++.+++++.+++.+|. |++ +.++..+...++++... .+++ ...+...+.+.+++
T Consensus 73 ------~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~-~~~~~ek~~v~~e~~~~-~~~p~~~~~~~~~~~~~~~ 144 (431)
T 3cx5_A 73 ------RDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSS-SNFEATKKSVLKQVQDF-EDNDHPNRVLEHLHSTAFQ 144 (431)
T ss_dssp ------SSCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCH-HHHHHHHHHHHHHHHHH-HHHCHHHHHHHHHHHHHTT
T ss_pred ------CCeEEEEEEechhhHHHHHHHHHHHHhCcccccCCH-HHHHHHHHHHHHHHHhh-hcCchhHHHHHHHHHHhcC
Confidence 678999999999999999999999999999 996 54554444444444432 2345 66777777777777
Q ss_pred hhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCcc
Q 004392 518 AGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVE 597 (756)
Q Consensus 518 ~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~ 597 (756)
++++.... ++..+.++.+ ..++|++||+++|.|+|++++|+||++ .+++++.++++|+.||..+...
T Consensus 145 ~~~~~~~~--~g~~~~l~~~----------t~~~l~~f~~~~y~~~~~~l~v~G~~~-~~~~~~~~~~~~~~~~~~~~~~ 211 (431)
T 3cx5_A 145 NTPLSLPT--RGTLESLENL----------VVADLESFANNHFLNSNAVVVGTGNIK-HEDLVNSIESKNLSLQTGTKPV 211 (431)
T ss_dssp TSGGGSCT--TCCHHHHHTC----------CHHHHHHHHHHHSCGGGEEEEEEESCC-HHHHHHHHTTSCCCSSCSCCCC
T ss_pred CCCCCCCC--CCCHHHHhhC----------CHHHHHHHHHhcCCCCcEEEEEEcCCC-HHHHHHHHHHHhCCCCCCCCCC
Confidence 66654322 3334444433 257899999999999999999999997 6789999999777887544321
Q ss_pred cccccccCCCCceEEE-e-CCCeeEEEeecccccCCCCcccHHHHHHHHhcC------------ccchhhhhhcCCCCCc
Q 004392 598 RVKWKAHLPSANEAIV-I-PTQVNYVGKAANIFETGYKLNGSAYVISKHISN------------VWLWDRVRVSGGAYGG 663 (756)
Q Consensus 598 ~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~------------s~L~~~iRekglaYg~ 663 (756)
. ..++......... . +.+++++.++++++++++++++++.|++.+||+ |+||++|||+|++|++
T Consensus 212 -~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v 289 (431)
T 3cx5_A 212 -L-KKKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNF 289 (431)
T ss_dssp -C-CCCCCCCCEEEEEECTTSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEE
T ss_pred -C-CCCCcccCceEEEcCCCCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeE
Confidence 1 1111112222222 2 356788999999888899999999999999984 8999999999999999
Q ss_pred cccccC--CCceEEEEEeeCC--ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhccc--C-CChhHHHHHHHHHH
Q 004392 664 FCDFDS--HSGVFSFLSYRDP--NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDA--Y-QLPDAKGYSSLLRH 736 (756)
Q Consensus 664 ~~~~~~--~~g~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~--~-~~~~~~~~~~~~~~ 736 (756)
++++.. ..|.+.++++++| +..++++.+.++++.+++ ++|++||+++|..+++++.. . .++...+......+
T Consensus 290 ~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (431)
T 3cx5_A 290 NHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTI-SVTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEV 368 (431)
T ss_dssp EEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred eEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHH
Confidence 988753 3688888899988 678999999999999988 89999999999999999987 5 58877777766554
Q ss_pred -HhCCCHHHHHHHHHHHhcCC
Q 004392 737 -LLGITEEERQRRREEILSTR 756 (756)
Q Consensus 737 -~~g~~~~~~~~~~~~i~~vt 756 (756)
..|.+.+ .+++.+.|.+||
T Consensus 369 ~~~g~~~~-~~~~~~~i~~vt 388 (431)
T 3cx5_A 369 LIKGSKLS-LGEAFKKIDAIT 388 (431)
T ss_dssp HHHSSCCC-HHHHHHHHHHCC
T ss_pred HhcCCCCC-HHHHHHHHhcCC
Confidence 3675543 577788887775
No 16
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-34 Score=315.07 Aligned_cols=292 Identities=20% Similarity=0.225 Sum_probs=218.0
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
++|++|+++|++++.|+|||+|||+|+||++||..++... + +.+|+.+||+|++|+|+|++ ++++++++.+|++++|
T Consensus 28 l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~-l-~~~G~~~na~t~~d~t~y~~-~~~~~~l~~~l~ll~d 104 (406)
T 3eoq_A 28 YFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRA-F-DRMGAQYNAFTSEEATVYYG-AVLPEFAYDLLGLFAK 104 (406)
T ss_dssp EEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHH-H-HHTTCEEEEEECSSCEEEEE-EECGGGHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHH-H-HHhCCCccceecCCeEEEEE-EecHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999988885544 4 66799999999999999997 4577999999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++ +|.|++++ |++| |++|++|+++..++|..++.+.+.+.+|++|||+++++|++++|.++|
T Consensus 105 ~~-~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t 166 (406)
T 3eoq_A 105 LL-RPALREED--FQTE---------------KLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALT 166 (406)
T ss_dssp HT-SCCCCHHH--HHHH---------------HHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCC
T ss_pred Hh-cCCCCHHH--HHHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCC
Confidence 99 99999999 8876 999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccCCCCc-hhh-H-----HH-HHh-hhcccccC
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSF-PRG-L-----SL-MLR-SMGKWIYD 240 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~-~-----~~-~~~-~~~~~~~~ 240 (756)
.++|++||++||+|+||+|+++||+|++++.++++ ..|+.++........... +.+ . .. ... ..-.|. +
T Consensus 167 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-~ 244 (406)
T 3eoq_A 167 REGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAE-RLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVALFP-G 244 (406)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEEEEE-C
T ss_pred HHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEEEec-C
Confidence 99999999999999999999999999999999997 444433211100000000 000 0 00 000 011221 1
Q ss_pred CCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHhhc----------c--CCCeeEEEEecCccchhhHHHHHHHHHHH
Q 004392 241 MNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYIL----------N--NPHCVTVEMQPDPEKASRDEAAEKEILAK 308 (756)
Q Consensus 241 ~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~----------~--~~~~~~~~~~p~~~~~~~~~~~~~e~l~~ 308 (756)
. +... ....++..++..++++.++++|+.++++.+. . +.+.+.+.+.|+. ..+......+++.+.
T Consensus 245 ~-~~~~-~d~~~l~vl~~iLgg~~~srL~~~lre~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~-~~~~~~~i~~~l~~l 321 (406)
T 3eoq_A 245 V-AYQE-EARFPGQVLAHLLGEEGSGRLHFALVDKGLAEVASFGLEEADRAGTFHAYVQADPAR-KGEVLAVLQEELDRL 321 (406)
T ss_dssp C-CTTC-TTHHHHHHHHHHHHCTTTSHHHHHTTTTTSEEEEEEEEEECSSCEEEEEEEEECGGG-HHHHHHHHHHHHHHH
T ss_pred C-CCCC-chHHHHHHHHHHhCCCcchHHHHHHHHcCCeeEEEEEecccCCceEEEEEEEeCcch-HHHHHHHHHHHHHHH
Confidence 1 1101 1244677788888876677799888775321 0 1233444444432 233334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004392 309 VKSSMTKEDLAELARATEE 327 (756)
Q Consensus 309 ~~~~~t~~el~~~k~~~~~ 327 (756)
...++|++||+++|+++..
T Consensus 322 ~~~~~t~~el~~ak~~l~~ 340 (406)
T 3eoq_A 322 GREGVGEEEVERAKTPLAT 340 (406)
T ss_dssp HHHCCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHH
Confidence 5789999999999997764
No 17
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=8.6e-33 Score=307.40 Aligned_cols=362 Identities=9% Similarity=0.017 Sum_probs=254.2
Q ss_pred ccccCCceEEEeecC--CCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCHHHHHHHH----hhcccceEE
Q 004392 363 VGDINGVKVLQHDLF--TNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSFVQLDQLI----GRKTGGISV 434 (756)
Q Consensus 363 ~~~~nG~~v~~~~~~--~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i----~~~~g~~~~ 434 (756)
.++.||++|++.+.+ ..+++++.++|+.|+..+ +..+.++++.+||++ ||++++..++.+.+ +..||.+|+
T Consensus 29 ~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~-GT~~~~~~~~~~~~~~~~~~~G~~~na 107 (492)
T 3go9_A 29 GKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALM-SSASFTPAQLQSLWQQGIDNERPLPPA 107 (492)
T ss_dssp EECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHH-CCTTCCHHHHHHHHHTCSCSSSCCCSE
T ss_pred EECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHhcCCCcce
Confidence 357899999987754 357899999999998754 445667788888885 99999999999754 458888999
Q ss_pred eeeeccCCCCCCCceEEEEEEEecc---ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHH
Q 004392 435 YPFTSSIHGKEDPCCCMVVRGKAMA---GQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARM 511 (756)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 511 (756)
+++ .+++.|++++++ ++++++|++|+|++.+|.|++ +.+.+.+...++.+..... .+...++.
T Consensus 108 ~t~----------~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~er~~~~~~~~~~~~-~~~~~~~~-- 173 (492)
T 3go9_A 108 ITS----------YDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSE-QTVNAALNTATDPIATFPQ-NIQEPWWR-- 173 (492)
T ss_dssp EEC----------SSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSH-HHHHHHHTCSSCCEEESSS-CTTCHHHH--
T ss_pred EeC----------CCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhccc-chhhHHHH--
Confidence 997 688999999999 789999999999999999996 5455443322223322211 12212221
Q ss_pred HhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCC
Q 004392 512 DAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLP 591 (756)
Q Consensus 512 ~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~ 591 (756)
..+...+++.++..+ ..++.+ ..++|++||+++|+|+|++|+|+||++ .+++.++++++|+.||
T Consensus 174 -~~~~~~~~~~~~~~~----~~i~~i----------t~~dL~~fy~~~Y~p~n~~l~vvGdvd-~~~~~~~i~~~f~~~~ 237 (492)
T 3go9_A 174 -YRLKGSSLIGHDPGQ----PVTQPV----------DVEKLKQFYQQWYTPDAMTLYVVGNVD-SRSIAAQISKAFSELK 237 (492)
T ss_dssp -HHTTTSTTTTCCTTC----CCCSSC----------CHHHHHHHHHHHCCGGGEEEEEEESCC-HHHHHHHHHHHHTTCC
T ss_pred -HHhccCCcccCCCch----hhhhcC----------CHHHHHHHHHHhcCcCceEEEEEcCCC-HHHHHHHHHHHhhcCC
Confidence 112222222211111 111111 358999999999999999999999996 6889999999999998
Q ss_pred CCCCccc-ccccccCCCCc-eEEEeCCCeeEEEeecccccCCCCcccHH------HHHHHHhcCccchhhhhh--c-CCC
Q 004392 592 TNSPVER-VKWKAHLPSAN-EAIVIPTQVNYVGKAANIFETGYKLNGSA------YVISKHISNVWLWDRVRV--S-GGA 660 (756)
Q Consensus 592 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~al------~vl~~iLg~s~L~~~iRe--k-gla 660 (756)
.....+. .+...+..... ..+..+.++.++.++|+++...++|+.++ .|++.+|| ++|+.++|+ + |++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg-~~L~~~lre~~~~gl~ 316 (492)
T 3go9_A 238 GKRTAPAAVATLAPLPPEPVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF-WHIKQVLEKNNQKNLK 316 (492)
T ss_dssp CCCSSCCCCCCCCCCCSSCEEEEESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCCTTCE
T ss_pred CCCCCCCCCCCCCCCCCCceEEEcCCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccccc
Confidence 6543211 11111111122 22334667889999999988888887766 79999999 799999998 5 899
Q ss_pred CCccccccCCCceEEEEEeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCC------ChhHHHHHHH
Q 004392 661 YGGFCDFDSHSGVFSFLSYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQ------LPDAKGYSSL 733 (756)
Q Consensus 661 Yg~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~------~~~~~~~~~~ 733 (756)
||+++++....+.+.|+++.++ +.+++++.+.+.++.+++.++|++||+++|..+++++.... ++...+....
T Consensus 317 y~~~s~~~~~~~~~~~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~ 396 (492)
T 3go9_A 317 LGFDCRVQYQRAQCAIHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRL 396 (492)
T ss_dssp EEEEEEEETTEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHH
T ss_pred cccCchhhhhhcceEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 9999987655454555555444 67889999999999999999999999999999999987653 2344444433
Q ss_pred HHHHhC---CCHHHHHHH-HHHHhcCC
Q 004392 734 LRHLLG---ITEEERQRR-REEILSTR 756 (756)
Q Consensus 734 ~~~~~g---~~~~~~~~~-~~~i~~vt 756 (756)
...+.+ ..+++..+. .+.|.+||
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~i~~vT 423 (492)
T 3go9_A 397 RSQQSGVVDIAPEQYQKLRQAFLSGLT 423 (492)
T ss_dssp HHHHHTCCCBCHHHHHHHHHHHHHHCC
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHhcCC
Confidence 222222 244444444 45577765
No 18
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=6.8e-33 Score=305.90 Aligned_cols=298 Identities=16% Similarity=0.183 Sum_probs=219.3
Q ss_pred CcEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHH
Q 004392 9 NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYF 88 (756)
Q Consensus 9 ~~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~ 88 (756)
.++|++|++.|++++.|+||++|||+|+||++||..+ +.+.+ +.+|+.+||+|+.|+|+|++. ++.++++.+|+++.
T Consensus 32 ~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~-l~~~l-~~~g~~~na~t~~d~t~y~~~-~~~~~l~~~l~ll~ 108 (445)
T 3ami_A 32 MVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGE-FSKRV-AAMGGRDNAFTTRDYTAYYQQ-VPSSRLSDVMGLEA 108 (445)
T ss_dssp EEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTH-HHHHH-HHTTCEEEEEECSSCEEEEEE-EEGGGHHHHHHHHH
T ss_pred EEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHH-HHHHH-HHhCCccccccCCCeEEEEEE-CCHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999988 55556 557999999999999999974 46789999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhh-hhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMK-GVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPK 167 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~-~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~ 167 (756)
|++++|.|++++ |++| |++|++|++ +..++|..++.+.+.+.+|++|||+++++|++++|.+
T Consensus 109 d~~~~p~f~~~~--~~~e---------------~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~ 171 (445)
T 3ami_A 109 DRMANLVVDDEL--FKKE---------------IQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQN 171 (445)
T ss_dssp HHHHCBCCCHHH--HHHH---------------HHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHH
T ss_pred HHhcCCCCCHHH--HHHH---------------HHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhh
Confidence 999999999999 8876 999999999 6778999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccc---cCCCCchhhHH-H------HHh-hhcc
Q 004392 168 LTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE---NNTGSFPRGLS-L------MLR-SMGK 236 (756)
Q Consensus 168 lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~-~------~~~-~~~~ 236 (756)
+|.++|++||++||+|+||+|+++||+|++++.++++ ..|+.++..... ......+.+.. + -.. +.-.
T Consensus 172 it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ 250 (445)
T 3ami_A 172 MTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAE-QTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELPYLALA 250 (445)
T ss_dssp CCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHH-HTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECSSCEEEEE
T ss_pred CCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCCccEEEEE
Confidence 9999999999999999999999999999999999997 555544321100 00000000100 0 000 0112
Q ss_pred cccCCC-CccCcCcchHHHHHHHHHhccCCcchHHHHHHHh---------hc--c-C---CCeeEEEEecCccchhhHHH
Q 004392 237 WIYDMN-PFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKY---------IL--N-N---PHCVTVEMQPDPEKASRDEA 300 (756)
Q Consensus 237 ~~~~~~-~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~---------~~--~-~---~~~~~~~~~p~~~~~~~~~~ 300 (756)
|..+.. +........++..++..++++.++++++.++++. +. . + .+.+.+.+.|+....+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~vl~~iLg~~~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ 330 (445)
T 3ami_A 251 WHVPAIVDLDKSRDAYALEILAAVLDGYDGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETD 330 (445)
T ss_dssp EEECCCSSTTCCHHHHHHHHHHHHHHSSTTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHH
T ss_pred EEcCCcccccCChhHHHHHHHHHHHcCCcchHHHHHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHH
Confidence 211110 0110122345677888887666677888877541 11 1 1 12233334454333444444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004392 301 AEKEILAKVKSSMTKEDLAELARATEE 327 (756)
Q Consensus 301 ~~~e~l~~~~~~~t~~el~~~k~~~~~ 327 (756)
..+++.+....++|++||+++|+.+..
T Consensus 331 i~~~l~~l~~~g~t~~el~~ak~~~~~ 357 (445)
T 3ami_A 331 LRAQVRDIAAKGVTEAELSRVKSQMVA 357 (445)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 555555555789999999999997664
No 19
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=99.97 E-value=2.5e-32 Score=299.25 Aligned_cols=292 Identities=18% Similarity=0.208 Sum_probs=217.2
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
++|++|++.|++++.|+|||+|||+|+||++++..++... + +.+|+.+||+|+.|+|+|++. +..++++.+|+++.|
T Consensus 28 l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~-l-~~~G~~~na~t~~d~t~~~~~-~~~~~l~~~l~ll~d 104 (421)
T 3hdi_A 28 IWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEF-F-DSIGGQVNAFTSKEYTCYYAK-VLDDHAGQAIDTLSD 104 (421)
T ss_dssp EEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHH-H-HTTTSCEEEEECSSCEEEEEE-EEGGGHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHH-H-HHhCCceeeeeccceEEEEEE-ecHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999998885544 4 677999999999999999974 467899999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++++|.|++++ |++| |++|++|++...++|..++.+.+.+.+|++|||+++++|++++|+++|
T Consensus 105 ~~~~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it 167 (421)
T 3hdi_A 105 MFFHSTFQKEE--LEKE---------------RKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFN 167 (421)
T ss_dssp HHHSBCCCHHH--HHHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCC
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCC
Confidence 99999999999 8876 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccc--cCCCCchhhHHH-----HH-hhhcccccCC
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRE--NNTGSFPRGLSL-----ML-RSMGKWIYDM 241 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~~~~~~ 241 (756)
.++|++||++||+|+||+|+++||+| +++.++++ ..|+.++..... ...+....+... -. ...-.|. +
T Consensus 168 ~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~~~-~- 243 (421)
T 3hdi_A 168 EGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIK-ETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLGYP-G- 243 (421)
T ss_dssp HHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHH-HHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEEEE-C-
T ss_pred HHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEe-c-
Confidence 99999999999999999999999999 99999997 555544321110 000000000000 00 0001121 1
Q ss_pred CCccCcCcchHHHHHHHHHhccCCcchHHHHHHHh-hc------------cCCCeeEEEEecCccchhhHHHHHHHHHHH
Q 004392 242 NPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKY-IL------------NNPHCVTVEMQPDPEKASRDEAAEKEILAK 308 (756)
Q Consensus 242 ~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~-~~------------~~~~~~~~~~~p~~~~~~~~~~~~~e~l~~ 308 (756)
.+. .-....++..++..++++.++++|++++++. +. .+.+.+.+.+.|+. ..+......+++.+.
T Consensus 244 ~~~-~~~d~~~l~vl~~iLgg~~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~-~~~~~~~i~~~l~~l 321 (421)
T 3hdi_A 244 LPI-GDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQ-LDDLVYSIQETTSAL 321 (421)
T ss_dssp CCT-TCTTHHHHHHHHHHHTSSSSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGG-HHHHHHHHHHHHHHH
T ss_pred CCC-CCchHHHHHHHHHHhCCCcccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHH-HHHHHHHHHHHHHHH
Confidence 111 1112446777888887666778999987651 11 01123344444432 233334444444444
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004392 309 VKSSMTKEDLAELARATEE 327 (756)
Q Consensus 309 ~~~~~t~~el~~~k~~~~~ 327 (756)
...++|++||+++|+.+..
T Consensus 322 ~~~~~t~~el~~ak~~l~~ 340 (421)
T 3hdi_A 322 AEKGLTEKELENGKEQLKG 340 (421)
T ss_dssp HTTCCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHH
Confidence 5779999999999997653
No 20
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=99.97 E-value=2.7e-31 Score=293.20 Aligned_cols=292 Identities=13% Similarity=0.110 Sum_probs=212.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
++|++|++.|++++.|+|||+|||+|+||++|+..+ +.+.+ +.+|+.+||+|+.|+|+|++. +..++++.+|+++.|
T Consensus 39 l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~-~~~~l-~~~G~~~na~t~~d~t~~~~~-~~~~~l~~~l~ll~d 115 (446)
T 1pp9_A 39 VWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNA-LEKEV-ESMGAHLNAYSTREHTAYYIK-ALSKDLPKAVELLAD 115 (446)
T ss_dssp EEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTH-HHHHH-HHTTCEEEEEECSSCEEEEEE-EEGGGHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHH-HHHHH-HHcCCEEEEEEcCCeEEEEEE-ecHHHHHHHHHHHHH
Confidence 357789999999999999999999999999999988 45555 456999999999999999974 466889999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++++|.|++++ |++| |++|++|++...++|..++.+.+.+.+|++|||+++++|++++|++++
T Consensus 116 ~~~~p~f~~~~--~~~e---------------k~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~ 178 (446)
T 1pp9_A 116 IVQNCSLEDSQ--IEKE---------------RDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLS 178 (446)
T ss_dssp HHHHBCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCC
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCC
Confidence 99999999999 8876 999999999998999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccccccccccc---C--CCCchhhHHHH------Hh-hhccc
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLREN---N--TGSFPRGLSLM------LR-SMGKW 237 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~---~--~~~~~~~~~~~------~~-~~~~~ 237 (756)
.++|++||++||+|+||+|+++||+|++++.++++ ..|+.++...... . .+..+.+.... .. ..-.|
T Consensus 179 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 257 (446)
T 1pp9_A 179 RADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQ-KHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLAHVAIAV 257 (446)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSEEEEEEE
T ss_pred HHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHH-HHhccCCCCCCCCccccCCCCCCCCceEEEecCCccceEEEEEE
Confidence 99999999999999999999999999999999996 4444332211000 0 00000000000 00 00112
Q ss_pred ccCCCCccCcCcchHHHHHHHHHhc---------cCCcchHHHHHHHhhc----------c--CCCeeEEEEecCccchh
Q 004392 238 IYDMNPFEPLKYEKPLMALKARLAE---------EGSKAVFSPLIEKYIL----------N--NPHCVTVEMQPDPEKAS 296 (756)
Q Consensus 238 ~~~~~~~~~l~~~~~l~~l~~~~~~---------~~~~~~~~~l~~~~~~----------~--~~~~~~~~~~p~~~~~~ 296 (756)
... +. .-....++..++..+++ +.++++|+.+.++.+. . +.+.+.+.+.| ....
T Consensus 258 ~~~--~~-~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~~glay~~~s~~~~~~~~g~~~i~~~~~~--~~~~ 332 (446)
T 1pp9_A 258 EGP--GW-AHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQSFQTFNICYADTGLLGAHFVCDH--MSID 332 (446)
T ss_dssp EEC--CT-TCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHHHTCCSEEEEEEEECSSCEEEEEEEEECT--TSHH
T ss_pred ecC--CC-CCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHhcCCeEEEEEecccCCCCeEEEEEEEECH--HHHH
Confidence 111 00 00123466778887763 2356788888765321 0 11233333333 2233
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004392 297 RDEAAEKEILAKVKSSMTKEDLAELARATEE 327 (756)
Q Consensus 297 ~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~ 327 (756)
...+...+.++....++|++||+++|+.+..
T Consensus 333 ~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~ 363 (446)
T 1pp9_A 333 DMMFVLQGQWMRLCTSATESEVLRGKNLLRN 363 (446)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3333344444444347999999999997764
No 21
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.97 E-value=6e-30 Score=308.88 Aligned_cols=346 Identities=14% Similarity=0.013 Sum_probs=258.3
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCc--ccccChHHHHHHhhhcCCCCCCH-HHHHHHHhhcccceEEeeeecc
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQ--ELLPLIPLFCQSLKEMGTKDLSF-VQLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~Gt~~~~~-~el~~~i~~~~g~~~~~~~~~~ 440 (756)
++.||++|++.+.+..+.+.+.+++++|+..+ +..+.+|+++|||+ .||++++. .++.+.++.+||.+|++|+
T Consensus 25 ~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf-~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~--- 100 (939)
T 1q2l_A 25 RLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSL-MGSKKYPQADSLAEYLKMHGGSHNASTA--- 100 (939)
T ss_dssp EETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTT-SCBSSSCSTTHHHHHHHTTTCEEEEEEC---
T ss_pred EecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHc-cCCCCCCCcchHHHHHHHcCCcceEEEC---
Confidence 57899999999998888899999999998744 44456677788777 59999984 6999999999999999998
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+.+.|++.+++++++.+|+++++++.+|.|++ +.+.+.+....+++..... ++...+...+.+.++++|+
T Consensus 101 -------~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~-~~~~~Er~~v~~E~~~~~~-~~~~~~~~~~~~~~~~~~p 171 (939)
T 1q2l_A 101 -------PYRTAFYLEVENDALPGAVDRLADAIAEPLLDK-KYAERERNAVNAELTMART-RDGMRMAQVSAETINPAHP 171 (939)
T ss_dssp -------SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCS-TTHHHHHHHHHHHHHHHTT-SHHHHHHHHHHHSSCTTSG
T ss_pred -------CCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHhcCCCCC
Confidence 688999999999999999999999999999987 4343333344444444333 3455677777777888888
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
++... ++..+.++.. .. ..+.++|++||+++|+|+||+|+|+||++ .+++.++++++|+.||......+..
T Consensus 172 ~~~~~--~G~~~~l~~~----~~--~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~-~~~l~~~v~~~f~~~~~~~~~~~~~ 242 (939)
T 1q2l_A 172 GSKFS--GGNLETLSDK----PG--NPVQQALKDFHEKYYSANLMKAVIYSNKP-LPELAKMAADTFGRVPNKESKKPEI 242 (939)
T ss_dssp GGSCC--SCCHHHHSCB----TT--BCHHHHHHHHHHHHCCTTTCEEEEEESSC-HHHHHHHHHHTGGGSCCCCCCCCCC
T ss_pred CccCC--CCCHHHHhcC----CC--chHHHHHHHHHHhccCHhheEEEEEcCCC-HHHHHHHHHHHhhhhccCCCCCCCC
Confidence 75443 3334444430 00 02468999999999999999999999996 6889999999999998654321111
Q ss_pred ccccCCC--CceEEEe-C-CCeeEEEeecccccCCCC-cccHHHHHHHHhc---CccchhhhhhcCCCCCcccccc--C-
Q 004392 601 WKAHLPS--ANEAIVI-P-TQVNYVGKAANIFETGYK-LNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFD--S- 669 (756)
Q Consensus 601 ~~~~~~~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~-d~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~--~- 669 (756)
..++... ....+.. + .++.++.++|+.++..+. +..++.+++.+|| +|+|+.+||++|+||++++++. .
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~~~~s~L~~~L~~~gl~~~~~a~~~~~~~ 322 (939)
T 1q2l_A 243 TVPVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVEGISANSDPIVN 322 (939)
T ss_dssp CSCSCCGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHCCCTTSHHHHHHHTTCEEEEEEEEESSTT
T ss_pred CCCCCCHHHcCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcCCCCCcHHHHHHHcCCchheeeccccccC
Confidence 1111111 1123323 3 356788888988776554 6789999999998 5799999999999999988742 2
Q ss_pred -CCceEEEEEeeCC----ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccCC--ChhHHHHH
Q 004392 670 -HSGVFSFLSYRDP----NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAYQ--LPDAKGYS 731 (756)
Q Consensus 670 -~~g~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~~--~~~~~~~~ 731 (756)
..|.|.+++...+ +..++++.+.+.++.+++.++|++||+++|..+..++.... ++...+..
T Consensus 323 ~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~ 391 (939)
T 1q2l_A 323 GNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRYPSITRDMDYVEW 391 (939)
T ss_dssp SSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHH
T ss_pred CCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccccCCCChHHHHHH
Confidence 2466666666554 56777778888888888889999999999999999987543 44444433
No 22
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=4e-29 Score=303.19 Aligned_cols=361 Identities=12% Similarity=0.023 Sum_probs=266.3
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCC--cccccChHHHHHHhhhcCCCCCCH-HHHHHHHhhcccceEEeeeecc
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLK--QELLPLIPLFCQSLKEMGTKDLSF-VQLDQLIGRKTGGISVYPFTSS 440 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~--~~~~~~~~l~~~~l~~~Gt~~~~~-~el~~~i~~~~g~~~~~~~~~~ 440 (756)
++.||++|++.+.++.+.+++.++|++|+.. ++..+++|+++|+++ .||++++. .++.+.++.+||.+|++|+
T Consensus 39 ~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf-~GT~~~p~~~~~~~~l~~~Gg~~NA~T~--- 114 (990)
T 3cww_A 39 ELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLF-LGTKKYPKENEYSQFLSEHAGSSNAFTS--- 114 (990)
T ss_dssp EETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGG-GCBSSSCSTTHHHHHHHTTTCEEEEEEC---
T ss_pred EeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHh-cCCCCCCCcchHHHHHHHcCCceeEEEC---
Confidence 5789999999999999999999999999873 345566777788877 59999987 7999999999999999998
Q ss_pred CCCCCCCceEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhH
Q 004392 441 IHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGW 520 (756)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 520 (756)
.+.+.|.+.+++++++.+|+++++++.+|.|++ +.+.+......+++.....+ +...+...+.+.++++|+
T Consensus 115 -------~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~-~~~~~E~~~V~~E~~~~~~~-~~~~~~~~~~~~~~~~~p 185 (990)
T 3cww_A 115 -------GEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDE-SAKDREVNAVDSEHEKNVMN-DAWRLFQLEKATGNPKHP 185 (990)
T ss_dssp -------SSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCH-HHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHTSCTTSG
T ss_pred -------CCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCH-HHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHhcCCCCC
Confidence 688899999999999999999999999999986 43333333333334333333 344567777788888888
Q ss_pred HHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHHHHHHhcCCCCCCccccc
Q 004392 521 ISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVK 600 (756)
Q Consensus 521 ~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 600 (756)
|.. .+++..+.+..+.+ .....+.++|++||+++|+|+|++|+|+||++ .+++.++++++|+.||..+.. ...
T Consensus 186 y~~--~~~G~~~~l~~~~~---~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~-~~~~~~~i~~~f~~~~~~~~~-~~~ 258 (990)
T 3cww_A 186 FSK--FGTGNKYTLETRPN---QEGIDVRQELLKFHSAYYSSNLMAVVVLGRES-LDDLTNLVVKLFSEVENKNVP-LPE 258 (990)
T ss_dssp GGC--CCSCCHHHHTHHHH---HTTCCHHHHHHHHHHHHCCGGGEEEEEEESSC-HHHHHHHHHHHHTTSCCCCCC-CCC
T ss_pred ccc--CCCCCHHHHhhccc---cccchHHHHHHHHHHHhCCHhheEEEEEcCCC-HHHHHHHHHHHhcCCccCCCC-CCC
Confidence 764 34455566665421 00011568999999999999999999999996 789999999999999865432 111
Q ss_pred ccc-cCCC---CceEEEeCC-CeeEEEeecccccCC-CCcccHHHHHHHHhcC---ccchhhhhhcCCCCCccccccC--
Q 004392 601 WKA-HLPS---ANEAIVIPT-QVNYVGKAANIFETG-YKLNGSAYVISKHISN---VWLWDRVRVSGGAYGGFCDFDS-- 669 (756)
Q Consensus 601 ~~~-~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~-~~d~~al~vl~~iLg~---s~L~~~iRekglaYg~~~~~~~-- 669 (756)
+.. +... ....+..+. ++.++.++|+.++.. +++..++.+++.+||+ +.|+.+||++|+||++++++..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~~~~sl~~~Lr~~g~~~~~~a~~~~~~ 338 (990)
T 3cww_A 259 FPEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKAGA 338 (990)
T ss_dssp CCSCSSCGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCCSTTCHHHHHHHTTSCSCEEEEEEEEE
T ss_pred CCCCCCChHHcCeEEEEEECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCCCCCcHHHHHHHCCCcceeeeccccCC
Confidence 111 1111 122333343 577888999888766 3678999999999973 5688899999999999987763
Q ss_pred -CCceEEEEEeeC-C---ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC--CChhHHHHHHHHHHHhCCCH
Q 004392 670 -HSGVFSFLSYRD-P---NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY--QLPDAKGYSSLLRHLLGITE 742 (756)
Q Consensus 670 -~~g~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~ 742 (756)
..|.|.+++... + +..++++++.+.++.+++.++++++++++|......+... .++.+.+... ..++.+.+.
T Consensus 339 ~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~ 417 (990)
T 3cww_A 339 RGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKI-AGILHYYPL 417 (990)
T ss_dssp TTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHH-HHHTTTSCG
T ss_pred CCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHH-HHHHhhCCH
Confidence 235555555532 2 5667788888888888889999999999998877777643 3666665443 334444444
Q ss_pred HHH
Q 004392 743 EER 745 (756)
Q Consensus 743 ~~~ 745 (756)
++.
T Consensus 418 ~~~ 420 (990)
T 3cww_A 418 EEV 420 (990)
T ss_dssp GGT
T ss_pred HHH
Confidence 444
No 23
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=99.97 E-value=1.4e-30 Score=289.72 Aligned_cols=179 Identities=18% Similarity=0.243 Sum_probs=164.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
++|++|++.|++++.|+|||+|||+|+||++++..++. +.+ +..|+.+||+|+.|+|+|++. +.+++++.+|+++.|
T Consensus 31 l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~-~~l-e~~G~~~na~t~~d~t~y~~~-~~~~~l~~~l~ll~d 107 (475)
T 1hr6_A 31 LYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMA-ETL-ELLGGNYQCTSSRENLMYQAS-VFNQDVGKMLQLMSE 107 (475)
T ss_dssp EEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHH-HHH-HHTTSCEEEEECSSCEEEEEE-ECGGGHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHH-HHH-HHcCCEEEEEEccCeEEEEEE-ecHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999988854 444 566999999999999999974 467899999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++++|.|++++ |++| |++|++|++...++|..++.+.+++.+|++|||+++.+|++++|+++|
T Consensus 108 ~~~~p~f~~~~--~~~e---------------r~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it 170 (475)
T 1hr6_A 108 TVRFPKITEQE--LQEQ---------------KLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSIS 170 (475)
T ss_dssp HHHCBCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCC
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcC
Confidence 99999999999 8876 999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccc
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNT 210 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~ 210 (756)
.++|++||++||+|+||+|+++| +|++++.++++ ..|+.
T Consensus 171 ~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~-~~f~~ 209 (475)
T 1hr6_A 171 KYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTG-KYLGD 209 (475)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHH-HHhcc
Confidence 99999999999999999999999 99999999996 44443
No 24
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=99.96 E-value=8e-30 Score=281.31 Aligned_cols=181 Identities=19% Similarity=0.236 Sum_probs=165.3
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
.+|++|+..|++++.|+|||+|||+|+||++++..+ +.+.+ ..+|+.+||+|+.|+|+|++. +..++++.+|+++.|
T Consensus 33 ~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~-l~~~l-~~~g~~~na~t~~~~t~~~~~-~~~~~l~~~l~ll~d 109 (443)
T 1hr6_B 33 IFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQG-IELEI-ENIGSHLNAYTSRENTVYYAK-SLQEDIPKAVDILSD 109 (443)
T ss_dssp EEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHH-HHHHH-HHTTCEEEEEECSSEEEEEEE-EEGGGHHHHHHHHHH
T ss_pred EEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHH-HHHHH-HHcCCeEEEEECCCeEEEEEE-ecHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999888 45555 456999999999999999974 466899999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++++|.|++++ |+++ |++|++|++...++|..++.+.+.+.+|++|||+++++|++++|++++
T Consensus 110 ~~~~p~f~~~~--~~~e---------------~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~ 172 (443)
T 1hr6_B 110 ILTKSVLDNSA--IERE---------------RDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSIT 172 (443)
T ss_dssp HHHSBCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCC
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCC
Confidence 99999999998 8776 999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccc
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTI 211 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~ 211 (756)
.++|++||++||+|+||+|+++||+|++++.++++ ..|+.+
T Consensus 173 ~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~-~~f~~~ 213 (443)
T 1hr6_B 173 RTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQ-KYFGHV 213 (443)
T ss_dssp HHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTS
T ss_pred HHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHH-HHhcCC
Confidence 99999999999999999999999999999999996 444443
No 25
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.96 E-value=1.9e-28 Score=292.41 Aligned_cols=350 Identities=10% Similarity=0.027 Sum_probs=253.6
Q ss_pred cccCCceEEEeecCCCcE--EEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhh--cccceEEeeeec
Q 004392 364 GDINGVKVLQHDLFTNDV--LYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGR--KTGGISVYPFTS 439 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~--v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~--~~g~~~~~~~~~ 439 (756)
.+.||++|++.+.+..+. +.+.+.|.. -+.+..+.+|+++|+++ +||++++..++...++. .|+.+|++|+
T Consensus 91 ~l~nGl~vl~i~~~~~~~~~~~f~vg~~t--ep~~~~GvAH~lEHmlf-~GS~k~p~~e~~~~l~~~slG~~lNA~T~-- 165 (1193)
T 3s5m_A 91 HKKAKTQVISLGTNDPLDVEQAFAFYVKT--LTHSGKGIPHILEHSVL-SGSKNYNYKNSIGLLEKGTLHTHLNAYTF-- 165 (1193)
T ss_dssp ETTTCCEEEEEEECCTTCCCEEEEEEEEC--CCSSSSCHHHHHHHHTT-SCBTTBCCTTHHHHHHHSCCEEEEEEEEC--
T ss_pred ECCCCCEEEEEECCCCCeEEEEEEEEECC--CCCCCchHHHHHHHHHh-CCCCCCChhhHHHHHHHhccCceEEeEEc--
Confidence 357999999998776532 334554443 34455567777888777 59999999999999988 8899999998
Q ss_pred cCCCCCCCceEEEEEEEecc-ccHHHHHHHHHHHHhcCCCCcHHH-H--------------------------------H
Q 004392 440 SIHGKEDPCCCMVVRGKAMA-GQAEDLFNLFNCVLQEVQLTDQQR-F--------------------------------K 485 (756)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~l~-~~l~~~l~ll~~~l~~p~f~~~~~-~--------------------------------~ 485 (756)
.+++.|.+.+++ ++++.+|+++.|++++|.|++.+. + +
T Consensus 166 --------~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k 237 (1193)
T 3s5m_A 166 --------NDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFN 237 (1193)
T ss_dssp --------SSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEE
T ss_pred --------CCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHH
Confidence 789999999888 999999999999999999765320 1 1
Q ss_pred HHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCc
Q 004392 486 QFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGC 565 (756)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~ 565 (756)
.++.+ ++... .+++...+...+.+.++++++|+....|. .+.+..+ +.++|++||+++|+|+|+
T Consensus 238 ~vV~~---E~k~~-~~~p~~~~~~~l~~~lf~~hpY~~~~~G~--~e~I~~l----------t~edl~~F~~~~Y~P~Na 301 (1193)
T 3s5m_A 238 GIVYN---EMKGA-LSSPLEDLYHEEMKYMFPDNVHSNNSGGD--PKEITNL----------TYEEFKEFYYKNYNPKKV 301 (1193)
T ss_dssp CHHHH---HHHHH-TTCHHHHHHHHHHHHHCTTSGGGSCTTCC--HHHHTTC----------CHHHHHHHHHHHSCTTTC
T ss_pred HHHHH---HHHHh-hCCHHHHHHHHHHHHhCCCCCCCCCCCCC--HHHHhhC----------CHHHHHHHHHHhcCccce
Confidence 12322 23222 23467788888888888888876554443 3444433 358999999999999999
Q ss_pred EEEEEeCccchhhHHHHHHHHHhcCCCCCCcc----cccccccCCCCceEEEe------CCCeeEEEeecccccC-----
Q 004392 566 LINMTADGKNLKNSERFVGKFLDMLPTNSPVE----RVKWKAHLPSANEAIVI------PTQVNYVGKAANIFET----- 630 (756)
Q Consensus 566 ~i~v~Gd~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----- 630 (756)
+|+|+||++ .+++.+.++++|+.|+..+... ..+..++. ...+.+.. +.++.++.++|++++.
T Consensus 302 ~l~v~Gdid-~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~ 379 (1193)
T 3s5m_A 302 KVFFFSKNN-PTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYK-KGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTN 379 (1193)
T ss_dssp EEEEEESSC-THHHHHHHHHHHTTCCGGGCCCCCCCCCCCCBCC-CCCEEEEEEEECCCSSCCEEEEEEEESSCBCC---
T ss_pred EEEEEecCC-HHHHHHHHHHHhccCCCCCCCcccccccCCCCCC-CCCeEEEEecCCCCCccccEEEEEEEecCcccccc
Confidence 999999997 6889999999999998543210 11111111 11222221 2457788899988642
Q ss_pred C-----------------------------CCcccHHHHHHHHhc---CccchhhhhhcCCCCCcc-ccccCC--CceEE
Q 004392 631 G-----------------------------YKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGF-CDFDSH--SGVFS 675 (756)
Q Consensus 631 ~-----------------------------~~d~~al~vl~~iLg---~s~L~~~iRekglaYg~~-~~~~~~--~g~~~ 675 (756)
+ +++++++.|++.||| +|||+++|||+|+||+++ +++... .+.|.
T Consensus 380 d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLggg~sSrL~~~L~e~gLa~~v~~~~~~~~~~~~~f~ 459 (1193)
T 3s5m_A 380 NHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIHTPESVLYKALTDCGLGNNVIDRGLNDSLVQYIFS 459 (1193)
T ss_dssp -------------------CCCCSTTCCCSHHHHHHHHHHHHHHHSSTTSHHHHHHHHHCSCSEEEEEEEECSSSSCEEE
T ss_pred cccccccccccccccccccccccccccccCccHHHHHHHHHHHHCCCCCCHHHHHHHhcCCeeeecccccccccCCcEEE
Confidence 2 478999999999998 799999999999999997 566543 45566
Q ss_pred EEE-eeCCC---------h-hhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC--CChhHHH--HHHHHHHHhCC
Q 004392 676 FLS-YRDPN---------L-LKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY--QLPDAKG--YSSLLRHLLGI 740 (756)
Q Consensus 676 ~~~-~~~~~---------~-~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~--~~~~~~~--~~~~~~~~~g~ 740 (756)
+.. ..++. . +++.+++.+.++.+++.+|+++||+++|..+..++... .+|.+.+ ......++++.
T Consensus 460 i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~ 539 (1193)
T 3s5m_A 460 IGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNR 539 (1193)
T ss_dssp EEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTC
T ss_pred EEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCC
Confidence 553 45553 3 57888999999999999999999999999998888642 2455443 34445566665
Q ss_pred CHHH
Q 004392 741 TEEE 744 (756)
Q Consensus 741 ~~~~ 744 (756)
++..
T Consensus 540 dp~~ 543 (1193)
T 3s5m_A 540 DPLL 543 (1193)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 6655
No 26
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.95 E-value=4.2e-28 Score=258.89 Aligned_cols=307 Identities=10% Similarity=0.018 Sum_probs=218.7
Q ss_pred ceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCCCCCCc
Q 004392 369 VKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPC 448 (756)
Q Consensus 369 ~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~ 448 (756)
++|+..+ +..+++++.++++.|+..++..+.++++.+++++ ||++++..++.+.++..||++|++++ .
T Consensus 1 l~v~~~~-~~~~~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~-Gt~~~~~~~l~~~l~~~G~~~na~t~----------~ 68 (352)
T 3cx5_B 1 LTVSARD-APTKISTLAVKVHGGSRYATKDGVAHLLNRFNFQ-NTNTRSALKLVRESELLGGTFKSTLD----------R 68 (352)
T ss_dssp CEEEEEC-CSCSEEEEEEEESCSGGGCSSTTHHHHHHHHTTS-CBSSSCHHHHHHHHHHHTCEEEEEEC----------S
T ss_pred CEEEEee-CCCceEEEEEEEeeeccCCCcccHHHHHHHHhcc-CcCCCCHHHHHHHHHHhCCeEEEEEc----------c
Confidence 4676654 4456999999999998766556677888888885 99999999999999999999999997 6
Q ss_pred eEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhcc
Q 004392 449 CCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFK-QFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGG 527 (756)
Q Consensus 449 ~~~~~~~~~l~~~l~~~l~ll~~~l~~p~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g 527 (756)
+++.|++++++++++.+|+++++++.+|.|++ +.+. ..+...++++... .+++...+...+.+.+++ +++.....
T Consensus 69 ~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~-~~~~~~~k~~v~~e~~~~-~~~p~~~~~~~~~~~~~~-~p~~~~~~- 144 (352)
T 3cx5_B 69 EYITLKATFLKDDLPYYVNALADVLYKTAFKP-HELTESVLPAARYDYAVA-EQCPVKSAEDQLYAITFR-KGLGNPLL- 144 (352)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCH-HHHHHTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHT-TTTTSCSS-
T ss_pred ceEEEEEEechhhHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhC-CCCCCccc-
Confidence 89999999999999999999999999999996 4443 4444444444432 234566666666655554 55432221
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHHHHH-HHHHhcCCCCCCcccccccccCC
Q 004392 528 VSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFV-GKFLDMLPTNSPVERVKWKAHLP 606 (756)
Q Consensus 528 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~ 606 (756)
.+.++. ...++|++||+++|.|+|++++|+| ++ .+++++++ +++|+.||......+.....+..
T Consensus 145 ---~~~l~~----------it~~~l~~f~~~~y~~~n~~l~v~G-~~-~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~ 209 (352)
T 3cx5_B 145 ---YDGVER----------VSLQDIKDFADKVYTKENLEVSGEN-VV-EADLKRFVDESLLSTLPAGKSLVSKSEPKFFL 209 (352)
T ss_dssp ---CCSSSC----------CCHHHHHHHHHHHCCGGGEEEEEES-SC-HHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCC
T ss_pred ---hhhhcc----------CCHHHHHHHHHHhCCcCcEEEEEeC-CC-HHHHHHHHHHHhhccCCCCCCCCCCCCCCCcc
Confidence 111221 1358999999999999999999999 96 68899999 89999998654321111111111
Q ss_pred CCceEEEeCCCeeEEEeecccccCCCCcccHHHHHHHHhcCccchhhhhhc-CCCCCccccccC--CCceEEEEEeeCCC
Q 004392 607 SANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVS-GGAYGGFCDFDS--HSGVFSFLSYRDPN 683 (756)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg~s~L~~~iRek-glaYg~~~~~~~--~~g~~~~~~~~~~~ 683 (756)
.....+..+ .+..+.++ +++++++++++.|++.+||+ +||++ |++ +++++.. ..|.|.+++.++ +
T Consensus 210 ~~~~~~~~~-~~~~~~~~---~~~~~~~~~~l~vl~~iLg~-----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~-~ 277 (352)
T 3cx5_B 210 GEENRVRFI-GDSVAAIG---IPVNKASLAQYEVLANYLTS-----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQ-D 277 (352)
T ss_dssp SCEEEEECS-SSEEEEEE---EEECTTTHHHHHHHHHHHHS-----TTSTTGGGC--SEEEEEEETTEEEEEEEEEES-C
T ss_pred CCeEEEecC-CCceEEEe---cCCCChhHHHHHHHHHHhCc-----chhcccCce--EEEeecCcCcceeEEEEEEeC-C
Confidence 221222222 34444443 34678899999999999995 77886 776 4444432 456666666554 5
Q ss_pred hhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC
Q 004392 684 LLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY 722 (756)
Q Consensus 684 ~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~ 722 (756)
++++.+++.++++ .++|++||++||..+++++...
T Consensus 278 ~~~~~~~i~~~l~----~~~t~~el~~ak~~~~~~~~~~ 312 (352)
T 3cx5_B 278 SAVVSSNIKKIVA----DLKKGKDLSPAINYTKLKNAVQ 312 (352)
T ss_dssp HHHHHHHHHHHHH----HHHSCEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHHHhh
Confidence 7787777776553 3599999999999999998754
No 27
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=99.95 E-value=1.7e-28 Score=272.75 Aligned_cols=178 Identities=15% Similarity=0.175 Sum_probs=151.1
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHh---cccCcccceeecCCceEEEeccCC--HHhHHHHH
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLK---GSLNTFLNAFTYPDRTCYPVASTN--TKDFYNLV 84 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~---~~~g~~~na~t~~d~t~y~~~~~~--~~~~~~~l 84 (756)
++|++|++.|++++.|+|||+|||+|+||+++|..++ .+.+. +.+|+.+||+|+.|+|+|++.+.. .++++.+|
T Consensus 54 l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~-~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l 132 (492)
T 3go9_A 54 LIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQL-QSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDAL 132 (492)
T ss_dssp EEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHH-HHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHH
T ss_pred EEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHH
Confidence 4688999999999999999999999999999998774 33322 357999999999999999975432 27899999
Q ss_pred HHHHhhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCc
Q 004392 85 DVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKV 164 (756)
Q Consensus 85 ~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~ 164 (756)
++++|++.+|.|++++ |++| |+++++|++...++|....+ ...+|+.++|+++.+| ++
T Consensus 133 ~ll~d~~~~p~f~~~~--~~~e---------------r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~ 190 (492)
T 3go9_A 133 AWLSDTAGNLAVSEQT--VNAA---------------LNTATDPIATFPQNIQEPWW---RYRLKGSSLIGHDPGQ--PV 190 (492)
T ss_dssp HHHHHHHHCCCCSHHH--HHHH---------------HTCSSCCEEESSSCTTCHHH---HHHTTTSTTTTCCTTC--CC
T ss_pred HHHHHHHhCCCCCHHH--HHHH---------------HHHHHHHHHhcccchhhHHH---HHHhccCCcccCCCch--hh
Confidence 9999999999999999 8876 88888888877777765443 3567778888887754 68
Q ss_pred cCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccc
Q 004392 165 IPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTI 211 (756)
Q Consensus 165 i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~ 211 (756)
|.++|+++|++||++||+|+||+|+++||+|++++.++++ ..|+.+
T Consensus 191 i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~-~~f~~~ 236 (492)
T 3go9_A 191 TQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQIS-KAFSEL 236 (492)
T ss_dssp CSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHH-HHHTTC
T ss_pred hhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHH-HHhhcC
Confidence 9999999999999999999999999999999999999997 555543
No 28
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=99.95 E-value=1.1e-27 Score=263.51 Aligned_cols=293 Identities=14% Similarity=0.130 Sum_probs=211.5
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCC-HHhHHHHHHHHH
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTN-TKDFYNLVDVYF 88 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~-~~~~~~~l~~~~ 88 (756)
.+|++|+..+ ++..|++|+++||+|+||++++..++ .+.+ ...|+.+|++|+.++|.|++.... .++++.+|+++.
T Consensus 40 ~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l-~~~l-~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~ 116 (434)
T 3gwb_A 40 LIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAI-AQGF-EGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFA 116 (434)
T ss_dssp EEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHH-HHHH-HTTTCEEEEEECSSCEEEEEEEECSHHHHHHHHHHHH
T ss_pred EEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHH-HHHH-HHhCCEEEeeecCCeEEEEEEecCccccHHHHHHHHH
Confidence 4678889999 89999999999999999999987774 4555 556999999999999999975433 245999999999
Q ss_pred hhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 89 DAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 89 d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
|++.+|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|++|||+++.+|++++|+++
T Consensus 117 ~~~~~p~f~~~~--~~~~---------------~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~i 179 (434)
T 3gwb_A 117 EVVGKPTFPADS--LARI---------------KNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPI 179 (434)
T ss_dssp HHHHSCCCCHHH--HHHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTC
T ss_pred HHHhCCCCCHHH--HHHH---------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhC
Confidence 999999999998 8876 99999999988999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccccccccccc--CCCCchhhHHH------HHh-hhccccc
Q 004392 169 TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLREN--NTGSFPRGLSL------MLR-SMGKWIY 239 (756)
Q Consensus 169 t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~-~~~~~~~ 239 (756)
|.++|++||++||+|+||+|+++||+|++++.++++ ..++.++...... .....+.+... ... +...|..
T Consensus 180 t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 258 (434)
T 3gwb_A 180 TLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAA-QVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQTSLMLAQLG 258 (434)
T ss_dssp CHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHH-HHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSEEEEEEEEEC
T ss_pred CHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCceeEEecCcC
Confidence 999999999999999999999999999999999996 4333322110000 00000000000 000 0111211
Q ss_pred CCCCccCcCcchHHHHHHHHHhcc-CCcchHHHHHHHh-hc----------c--CCCeeEEEEecCccchhhHHHHHHHH
Q 004392 240 DMNPFEPLKYEKPLMALKARLAEE-GSKAVFSPLIEKY-IL----------N--NPHCVTVEMQPDPEKASRDEAAEKEI 305 (756)
Q Consensus 240 ~~~~~~~l~~~~~l~~l~~~~~~~-~~~~~~~~l~~~~-~~----------~--~~~~~~~~~~p~~~~~~~~~~~~~e~ 305 (756)
. +. .-....++..++..++++ .++++|+.++++. +. . ..+.+.+.+.|+. ..+......+++
T Consensus 259 ~--~~-~~~d~~~l~vl~~iLg~~~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~-~~~~~~~i~~~l 334 (434)
T 3gwb_A 259 I--DR-DDPDYAAVSLGNQILGGGGFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQTRAEM-SEGTLKLVQDVF 334 (434)
T ss_dssp C--BT-TCTTHHHHHHHHHHHHSSSSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGG-HHHHHHHHHHHH
T ss_pred C--CC-CCcchHHHHHHHHHhCCCcccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEecchhh-HHHHHHHHHHHH
Confidence 0 11 111234667778878765 5667999887761 10 1 2233444444443 233333343433
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004392 306 LAKVKSSMTKEDLAELARATEE 327 (756)
Q Consensus 306 l~~~~~~~t~~el~~~k~~~~~ 327 (756)
.+....++|++|++++|+.+..
T Consensus 335 ~~l~~~~~~~~el~~ak~~~~~ 356 (434)
T 3gwb_A 335 AEYLKNGPTQKELDDAKRELAG 356 (434)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHh
Confidence 3334679999999999996553
No 29
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=99.95 E-value=1.2e-27 Score=262.43 Aligned_cols=290 Identities=14% Similarity=0.153 Sum_probs=209.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCC----CCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhH--HHH
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSR----KYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF--YNL 83 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~----~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~--~~~ 83 (756)
.+|++|+..|++++.|+||++|||+|+||+ +++..+ +.+.+ ..+|+.+||+|+.|+|+|++.+ .++++ +.+
T Consensus 30 l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~-~~~~l-~~~G~~~~a~t~~~~t~~~~~~-~~~~~~l~~~ 106 (424)
T 3amj_B 30 VDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENA-IADRL-ADIGARLGGGAEADRASFSLRV-LSSPAERNSA 106 (424)
T ss_dssp EEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHH-HHHHH-HHTTCEEEEEECSSCEEEEEEE-ESSHHHHHHH
T ss_pred EEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHH-HHHHH-HHhCCEEEeecCCCeEEEEEEE-eccccChhHH
Confidence 357889999999999999999999999999 998877 45555 4569999999999999999754 34556 999
Q ss_pred HHHHHhhhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcC
Q 004392 84 VDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPK 163 (756)
Q Consensus 84 l~~~~d~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~ 163 (756)
|+++.|++.+|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|++|||+++. +++
T Consensus 107 l~ll~~~~~~p~f~~~~--~~~e---------------~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~ 167 (424)
T 3amj_B 107 LTILRDILAHPTFPAPV--LERE---------------RARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVA 167 (424)
T ss_dssp HHHHHHHHHCBCCCHHH--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHH
T ss_pred HHHHHHHHhCCCCCHHH--HHHH---------------HHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHH
Confidence 99999999999999998 8876 9999999998889999999999999999999999887 899
Q ss_pred ccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccC--CCCchhhHHHHH------h-hh
Q 004392 164 VIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN--TGSFPRGLSLML------R-SM 234 (756)
Q Consensus 164 ~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~------~-~~ 234 (756)
+|+++|.++|++||++||+|+||+|+++||+|++++.++++ ..|+.++....... ....+.+..+.. . ..
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 246 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQ-QLTADLPAGATLPPLPDPAMPRATVERIANPATQAHIA 246 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHH-HTTTTSCCCCCCCCCCCCCCCCCEEEEEECSSSEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCCCceEEeeCCCCccEEE
Confidence 99999999999999999999999999999999999999996 55554432111000 000010100000 0 00
Q ss_pred cccccCCCCccCcCcchHHHHHHHHHhcc-CCcchHHHHHHHh-hc----------c--CCCeeEEEEecCccchhhHHH
Q 004392 235 GKWIYDMNPFEPLKYEKPLMALKARLAEE-GSKAVFSPLIEKY-IL----------N--NPHCVTVEMQPDPEKASRDEA 300 (756)
Q Consensus 235 ~~~~~~~~~~~~l~~~~~l~~l~~~~~~~-~~~~~~~~l~~~~-~~----------~--~~~~~~~~~~p~~~~~~~~~~ 300 (756)
-.|. + .+. ......++..++..++++ .++++|+.++++. +. . +.+.+.+.+.|+. ..+....
T Consensus 247 ~~~~-~-~~~-~~~~~~~~~vl~~iLg~~~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~-~~~~~~~ 322 (424)
T 3amj_B 247 IGMP-T-LKR-GDPDFFPLVVGNYALGGGGFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEK-ADEAVQV 322 (424)
T ss_dssp EEEE-E-EBT-TCTTHHHHHHHHHHHTTSGGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTT-HHHHHHH
T ss_pred eecc-C-CCC-CCcchHHHHHHHHHhCCCCccchhHHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCccc-HHHHHHH
Confidence 0111 0 011 112244567777777654 4566888887641 10 0 1123444444442 2333333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004392 301 AEKEILAKVKSSMTKEDLAELARATE 326 (756)
Q Consensus 301 ~~~e~l~~~~~~~t~~el~~~k~~~~ 326 (756)
..+++.+....++|++|++++|+.+.
T Consensus 323 i~~~l~~l~~~~~t~~el~~ak~~~~ 348 (424)
T 3amj_B 323 ANDTLDAFLREGPTDAELQAAKDNLI 348 (424)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44444444467999999999998654
No 30
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=99.95 E-value=2.5e-27 Score=261.03 Aligned_cols=290 Identities=10% Similarity=0.039 Sum_probs=208.4
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
.+|++|+..|+++..|+||++|||+|+||++++..++ .+.+ ...|+.+||+|+.|+|.|++. +..++++.+|+++.|
T Consensus 49 ~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~-~~~l-~~~G~~~na~t~~~~t~~~~~-~~~~~l~~~l~ll~~ 125 (439)
T 1pp9_B 49 LFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKI-TRGI-EAVGGKLSVTSTRENMAYTVE-CLRDDVDILMEFLLN 125 (439)
T ss_dssp EEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHH-HHHH-HHTTCEEEEEECSSCEEEEEE-EEGGGHHHHHHHHHH
T ss_pred EEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHH-HHHH-HHhCCeEEEEecceEEEEEEE-eehhhHHHHHHHHHH
Confidence 3577889999999999999999999999999998774 4445 456999999999999999974 466899999999999
Q ss_pred hhhCCCCcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCCC
Q 004392 90 AVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLT 169 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~lt 169 (756)
++.+|.|++++ |+++ |+++++|++...++|..++.+.+.+.+|+ |||+++++|++++|+++|
T Consensus 126 ~~~~p~f~~~~--~~~~---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~it 187 (439)
T 1pp9_B 126 VTTAPEFRRWE--VAAL---------------QPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVT 187 (439)
T ss_dssp HHHCBCCCHHH--HHHH---------------HHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTCC
T ss_pred HHhCCCCCHHH--HHHH---------------HHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhcC
Confidence 99999999998 8876 99999999988899999999999999999 999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccC-CCCchhhHHHH-----Hh-hhcccccCCC
Q 004392 170 FEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-TGSFPRGLSLM-----LR-SMGKWIYDMN 242 (756)
Q Consensus 170 ~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~-~~~~~~~~~~ 242 (756)
.++|++||++||+|+||+++++|| |++++.++++ ..++ ++....... ....+.+.... .. ..-.|. ..
T Consensus 188 ~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~- 262 (439)
T 1pp9_B 188 PVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAE-QFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAALVAE-SA- 262 (439)
T ss_dssp HHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHH-HHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEEEEE-CC-
T ss_pred HHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHH-HHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEEEec-CC-
Confidence 999999999999999999999999 9999999996 4443 321110000 00000000000 00 001111 11
Q ss_pred CccCcCcchHHHHHHHHHhccC--------CcchHHHHHHHh-hc------------cCCCeeEEEEecCccchhhHHHH
Q 004392 243 PFEPLKYEKPLMALKARLAEEG--------SKAVFSPLIEKY-IL------------NNPHCVTVEMQPDPEKASRDEAA 301 (756)
Q Consensus 243 ~~~~l~~~~~l~~l~~~~~~~~--------~~~~~~~l~~~~-~~------------~~~~~~~~~~~p~~~~~~~~~~~ 301 (756)
+. .-.....+..|+..++++. ++++|+.++++. +. .+.+.+.+.+.|+. ..+.....
T Consensus 263 ~~-~~~~~~~~~ll~~iLg~~~~~~~~~g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~-~~~~~~~~ 340 (439)
T 1pp9_B 263 AI-GSAEANAFSVLQHVLGAGPHVKRGSNATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAAS-AGDVIKAA 340 (439)
T ss_dssp CT-TSHHHHHHHHHHHHHCCSCSBTTCCCTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGG-HHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHhCCCcccCCCCCccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHH-HHHHHHHH
Confidence 11 1112345666777776432 467899888662 11 01123444444422 23333334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004392 302 EKEILAKVKSSMTKEDLAELARATEE 327 (756)
Q Consensus 302 ~~e~l~~~~~~~t~~el~~~k~~~~~ 327 (756)
.+++.+....++|++||+++|+.+..
T Consensus 341 ~~~l~~l~~~~~t~~el~~ak~~~~~ 366 (439)
T 1pp9_B 341 YNQVKTIAQGNLSNPDVQAAKNKLKA 366 (439)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34333334568999999999997654
No 31
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=99.94 E-value=1.3e-26 Score=280.91 Aligned_cols=345 Identities=12% Similarity=0.104 Sum_probs=246.8
Q ss_pred cccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHH-HHHHh-hcccceEEeeeeccC
Q 004392 364 GDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQL-DQLIG-RKTGGISVYPFTSSI 441 (756)
Q Consensus 364 ~~~nG~~v~~~~~~~~~~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el-~~~i~-~~~g~~~~~~~~~~~ 441 (756)
.+.||++|++.+.+..+.+ +.+.+... +++..+.+|+++|+++ .||++++..++ .+.+. ..|+.+|++|+
T Consensus 42 ~l~nGl~v~~~~~~~~~~~-~~vg~~~e--~~~~~GlAH~lEHm~f-~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~---- 113 (995)
T 2fge_A 42 HKKTGCEVMSVSNEDENKV-FGVVFRTP--PKDSTGIPHILQHSVL-CGSRKYPVKEPFVELLKGSLHTFLNAFTY---- 113 (995)
T ss_dssp ETTTCCEEEEEECSCSSEE-EEEEEECC--CSSSSCHHHHHHHHTT-SCBTTBCSSCHHHHHHHHCCEEEECCEEC----
T ss_pred ECCCCCEEEEEEcCCCccE-EEEEeCCC--CcCCCChHHHHHHHHh-CCCCCCCCccHHHHHHHhccCCCceeeEC----
Confidence 4679999999998876653 45555432 3455567777888777 59999998774 44444 46888999998
Q ss_pred CCCCCCceEEEEEEEec-cccHHHHHHHHHHHHhcCCC--CcHHHHHH------------------HHHHHHHHHhhhhc
Q 004392 442 HGKEDPCCCMVVRGKAM-AGQAEDLFNLFNCVLQEVQL--TDQQRFKQ------------------FVSQSKARMENRLR 500 (756)
Q Consensus 442 ~~~~~~~~~~~~~~~~l-~~~l~~~l~ll~~~l~~p~f--~~~~~~~~------------------~~~~~~~~~~~~~~ 500 (756)
.+.+.|.+.+. .++++.+|+++.|++.+|.| ++.+ +.+ ++.++.....
T Consensus 114 ------~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~-~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~---- 182 (995)
T 2fge_A 114 ------PDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHT-FQQEGWHYELNDPSEDISYKGVVFNEMKGVY---- 182 (995)
T ss_dssp ------SSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHH-HHHHTCEEECSCTTSCCEEECHHHHHHHHHT----
T ss_pred ------CCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHH-HHHhhhhhhcccccccccccchHHHHHHhhh----
Confidence 68888888775 57999999999999999999 8633 332 3433333322
Q ss_pred cCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccchhhHH
Q 004392 501 GSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSE 580 (756)
Q Consensus 501 ~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~~~~~~~~ 580 (756)
+++...+...+.+.++++++|+....|. .+.++.+ +.++|++||+++|+|+|++|+|+||++ .+++.
T Consensus 183 ~~p~~~~~~~~~~~~~~~~py~~~~~G~--~~~i~~~----------t~~~l~~f~~~~Y~p~n~~l~v~Gd~d-~~~~~ 249 (995)
T 2fge_A 183 SQPDNILGRIAQQALSPENTYGVDSGGD--PKDIPNL----------TFEEFKEFHRQYYHPSNARIWFYGDDD-PVHRL 249 (995)
T ss_dssp TSHHHHHHHHHHHHHCTTSGGGSCTTCC--TTTGGGC----------CHHHHHHHHHHHSSGGGEEEEEEESSC-HHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCCCCCCCCC--hHhhhhc----------CHHHHHHHHHHhCCccceEEEEEcCCC-HHHHH
Confidence 3456778888888888888886554443 2333332 358999999999999999999999996 78899
Q ss_pred HHHHHHHhcCC--CCCCcccccccccCCCC---ceEEEe---C--CCeeEEEeecccccCC--CCcccHHHHHHHHhc--
Q 004392 581 RFVGKFLDMLP--TNSPVERVKWKAHLPSA---NEAIVI---P--TQVNYVGKAANIFETG--YKLNGSAYVISKHIS-- 646 (756)
Q Consensus 581 ~~~~~~~~~l~--~~~~~~~~~~~~~~~~~---~~~~~~---~--~~~~~~~~~~~~~~~~--~~d~~al~vl~~iLg-- 646 (756)
++++++|+.|+ ..+.....+..++.... ...+.+ . .++.++.++|++++.. ++++.++.|++.+||
T Consensus 250 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~vl~~~Lg~~ 329 (995)
T 2fge_A 250 RVLSEYLDMFEASPSPNSSKIKFQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLALGFLDHLMLGT 329 (995)
T ss_dssp HHHHHHHTTCCCCSHHHHSCCCCCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHhhCCccccCCCcccCCCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999998 32211011111111111 112222 1 3467888999988776 588999999999998
Q ss_pred -CccchhhhhhcCCCCCcccc-ccCC--CceEEEE-EeeCC-ChhhHHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcc
Q 004392 647 -NVWLWDRVRVSGGAYGGFCD-FDSH--SGVFSFL-SYRDP-NLLKTLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVD 720 (756)
Q Consensus 647 -~s~L~~~iRekglaYg~~~~-~~~~--~g~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~ 720 (756)
+|+|+++||++|+||+++++ +... .|.|.+. ...++ +..++++++.+.++.+++.++|++||+++|..+..++.
T Consensus 330 ~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~ak~~~~~~~~ 409 (995)
T 2fge_A 330 PASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAEEGFDNDAVEASMNTIEFSLR 409 (995)
T ss_dssp TTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999876 6533 6777764 34555 45788888888888888899999999999999998886
Q ss_pred cCC---ChhHH--HHHHHHHHHhCC
Q 004392 721 AYQ---LPDAK--GYSSLLRHLLGI 740 (756)
Q Consensus 721 ~~~---~~~~~--~~~~~~~~~~g~ 740 (756)
... ++.+. +......++++.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (995)
T 2fge_A 410 ENNTGSFPRGLSLMLQSISKWIYDM 434 (995)
T ss_dssp HCCCTTSCHHHHHHHHHHHHHTTTS
T ss_pred hccCCCCccHHHHHHHHHHHHhcCC
Confidence 432 34532 344444455543
No 32
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=99.94 E-value=1.1e-26 Score=255.24 Aligned_cols=286 Identities=10% Similarity=0.038 Sum_probs=202.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
.+|++|+..|++++.|+||++|||+|+||+++ .+ +.+|+++||+|+.|+|+|++.. ..++++.+|+++.|
T Consensus 27 l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~~--------~~-~~~G~~~na~t~~~~t~~~~~~-~~~~l~~~l~ll~~ 96 (431)
T 3cx5_A 27 VVFGSGAANENPYNNGVSNLWKNIFLSKENSA--------VA-AKEGLALSSNISRDFQSYIVSS-LPGSTDKSLDFLNQ 96 (431)
T ss_dssp EEESCCGGGSCTTTTTHHHHHHHHHTSHHHHH--------HH-HHTTCEEEEEECSSCEEEEEEE-CSTTHHHHHHHHHH
T ss_pred EEEecCccCCCCCCcchHHHHHHHHhcCCCcc--------cH-HHcCCeeeeeecCCeEEEEEEe-chhhHHHHHHHHHH
Confidence 35778999999999999999999999998643 12 5679999999999999999754 55789999999999
Q ss_pred hhhCCC---CcccccccccccceeccCCCCCCccchhHHHHHhhhhcCCh-HHHHHHHHHHHhCCCCCCCCCCCCCcCcc
Q 004392 90 AVFFPK---CVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQP-DNILGRAAQQALFPDNAYGVDSGGDPKVI 165 (756)
Q Consensus 90 ~~~~p~---~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~-~~~~~~~~~~~~~~~~~y~~~~~G~~~~i 165 (756)
++.+|. |++++ |+++ |+++++|++...++| ..++.+.+.+.+|++|||+++++|++++|
T Consensus 97 ~~~~p~~~~f~~~~--~~~e---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 159 (431)
T 3cx5_A 97 SFIQQKANLLSSSN--FEAT---------------KKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESL 159 (431)
T ss_dssp HHHTCSTTTTCHHH--HHHH---------------HHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHH
T ss_pred HHhCcccccCCHHH--HHHH---------------HHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 999999 99998 8876 999999999888899 99999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhcccccccccccccC-CCCchhhHHHH-------Hh-hhcc
Q 004392 166 PKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENN-TGSFPRGLSLM-------LR-SMGK 236 (756)
Q Consensus 166 ~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-~~~~ 236 (756)
+++|.++|++||++||+|+||+|+++||+|++++.++++ ..+..++....... .+..+.+.... .. ..-.
T Consensus 160 ~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 238 (431)
T 3cx5_A 160 ENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIE-SKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAWISLA 238 (431)
T ss_dssp HTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHT-TSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEEEEEE
T ss_pred hhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHH-HHhCCCCCCCCCCCCCCCcccCceEEEcCCCCCceEEEEE
Confidence 999999999999999999999999999999999999997 42333321100000 00000000000 00 0011
Q ss_pred cccCCCCccCcCcchHHHHHHHHHhcc---------CCcchHHHHHHHhhc------------cCCCeeEEEEecCccch
Q 004392 237 WIYDMNPFEPLKYEKPLMALKARLAEE---------GSKAVFSPLIEKYIL------------NNPHCVTVEMQPDPEKA 295 (756)
Q Consensus 237 ~~~~~~~~~~l~~~~~l~~l~~~~~~~---------~~~~~~~~l~~~~~~------------~~~~~~~~~~~p~~~~~ 295 (756)
|. + .+. .-....++..++..+++. .++++|+.+.++.+. .+.+.+.+.+.|.....
T Consensus 239 ~~-~-~~~-~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~ 315 (431)
T 3cx5_A 239 VE-G-EPV-NSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMID 315 (431)
T ss_dssp EE-C-CCT-TCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHHHHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHH
T ss_pred ee-c-CCC-CCccHHHHHHHHHHcCCCccCCCCccccccHHHHHHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHH
Confidence 11 1 111 111244567777777642 235688888755221 01123333444412333
Q ss_pred hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004392 296 SRDEAAEKEILAKVKSSMTKEDLAELARATEE 327 (756)
Q Consensus 296 ~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~ 327 (756)
+......+++.+... ++|++||+++|+.+..
T Consensus 316 ~~~~~~~~~l~~l~~-~~t~~el~~ak~~~~~ 346 (431)
T 3cx5_A 316 DLIHFTLKQWNRLTI-SVTDTEVERAKSLLKL 346 (431)
T ss_dssp HHHHHHHHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Confidence 333334443333335 9999999999996654
No 33
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=99.93 E-value=1.6e-26 Score=246.61 Aligned_cols=175 Identities=11% Similarity=0.041 Sum_probs=156.7
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCceEEEeccCCHHhHHHHHHHHHh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFD 89 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~y~~~~~~~~~~~~~l~~~~d 89 (756)
.+|++|++.| ++.|+||++|||+|+||++++..++ .+.+ +.+|+.+||+|+.|+|+|++. +..++++.+|+++.|
T Consensus 17 ~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l-~~~l-~~~G~~~na~t~~~~t~~~~~-~~~~~l~~~l~ll~d 91 (352)
T 3cx5_B 17 VKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKL-VRES-ELLGGTFKSTLDREYITLKAT-FLKDDLPYYVNALAD 91 (352)
T ss_dssp EEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHH-HHHH-HHHTCEEEEEECSSCEEEEEE-EEGGGHHHHHHHHHH
T ss_pred EEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHH-HHHH-HHhCCeEEEEEccceEEEEEE-echhhHHHHHHHHHH
Confidence 3577888886 4899999999999999999998875 4455 567999999999999999974 466889999999999
Q ss_pred hhhCCCCcccccccc-cccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhCCCCCCCCCCCCCcCccCCC
Q 004392 90 AVFFPKCVEDFQTFQ-QEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKL 168 (756)
Q Consensus 90 ~~~~p~~~~~~~~~~-~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~i~~l 168 (756)
++++|.|++++ |+ ++ |+++++|+++..++|..++.+.+.+.+|+ |||+++.. +++|+++
T Consensus 92 ~~~~p~f~~~~--~~~~~---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~i 151 (352)
T 3cx5_B 92 VLYKTAFKPHE--LTESV---------------LPAARYDYAVAEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERV 151 (352)
T ss_dssp HHHHBCCCHHH--HHHTH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCC
T ss_pred HHhCCCCCHHH--HHHHH---------------HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccC
Confidence 99999999998 86 65 99999999998899999999999999997 99998874 7899999
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHh-hhcccccc
Q 004392 169 TFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRIL-SEASMNTI 211 (756)
Q Consensus 169 t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i-~~~~~~~~ 211 (756)
|.++|++||++||+|+||+|+++| +|++++.+++ + ..|+.+
T Consensus 152 t~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~-~~f~~~ 193 (352)
T 3cx5_B 152 SLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDE-SLLSTL 193 (352)
T ss_dssp CHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHH-STTTTS
T ss_pred CHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHH-HhhccC
Confidence 999999999999999999999999 9999999999 5 555443
No 34
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=99.93 E-value=9.1e-26 Score=247.39 Aligned_cols=292 Identities=12% Similarity=0.092 Sum_probs=204.8
Q ss_pred cEEEEEecCCCCCCCChhHHHHHhcccCCCCCCCCcHHHHHHhcccCcccceeecCCce----EEEeccCCH------Hh
Q 004392 10 KVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRT----CYPVASTNT------KD 79 (756)
Q Consensus 10 ~~~~~g~~~e~~~~~G~ah~lehl~~~gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t----~y~~~~~~~------~~ 79 (756)
++|++|+..|+ .|++|++|||+|+||+++|..+-+.+.+...+|+.+||+|+.|.| .|++..... ++
T Consensus 29 ~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 3d3y_A 29 VRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQV 105 (425)
T ss_dssp EEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCH
T ss_pred EEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChhhccchhH
Confidence 45778876654 699999999999999999776556666644459999999999995 677644333 27
Q ss_pred HHHHHHHHHhhhhCCC-----CcccccccccccceeccCCCCCCccchhHHHHHhhhhcCChHHHHHHHHHHHhC-CCCC
Q 004392 80 FYNLVDVYFDAVFFPK-----CVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALF-PDNA 153 (756)
Q Consensus 80 ~~~~l~~~~d~~~~p~-----~~~~~~~~~~e~~~~~~~~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (756)
++.+|+++.|++++|. |++++ |+++ |+++.+|++...++|..++.+.+.+.+| ++||
T Consensus 106 l~~~l~ll~~~l~~p~~~~~~f~~~~--~~~~---------------k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~ 168 (425)
T 3d3y_A 106 LAEAVDFLKEIIFAPNIQAGQFEAET--FQRE---------------KENLKAYLESIVEDKQTYASLALQSVYFNQSED 168 (425)
T ss_dssp HHHHHHHHHHHHHSCSEETTEECHHH--HHHH---------------HHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHHHHHHhCcccccCCCCHHH--HHHH---------------HHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999 99988 8775 9999999998888999999999999999 8999
Q ss_pred CCCCCCCCcCccCCCCHHHHHHHHHhhcCCCCcEEEEEeCCCHHHHHHHhhhccccccccccccc-C-CCCchhhH--HH
Q 004392 154 YGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLREN-N-TGSFPRGL--SL 229 (756)
Q Consensus 154 y~~~~~G~~~~i~~lt~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~--~~ 229 (756)
|+++++|++++|+++|.++|++||++||+|+||+|+++||+|++++.+++ + .++ ++...... . ....|.+. ..
T Consensus 169 ~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 245 (425)
T 3d3y_A 169 QKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-K-QLP-FTPREEGKAAIFYNQPIRNVIEE 245 (425)
T ss_dssp TTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-H-TSC-CCCCCCCCCCSCCCCCCCSSCEE
T ss_pred ccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-H-hCC-CCccccccccccccccCCCccee
Confidence 99999999999999999999999999999999999999999999999998 3 343 32111000 0 00001000 00
Q ss_pred H-------Hh-hhcccccCCCCccCcCcchHHHHHHHHHhccCCcchHHHHHHHh-hc----------cCCCeeEEEEec
Q 004392 230 M-------LR-SMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKY-IL----------NNPHCVTVEMQP 290 (756)
Q Consensus 230 ~-------~~-~~~~~~~~~~~~~~l~~~~~l~~l~~~~~~~~~~~~~~~l~~~~-~~----------~~~~~~~~~~~p 290 (756)
. .. +.-.|..+ .+. ......++..|...++++.++++|+.++++. +. .+.+.+.+.+.|
T Consensus 246 ~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~~~~vl~~iLg~~~~s~L~~~lRe~~glaY~v~~~~~~~~g~~~i~~~~~~ 323 (425)
T 3d3y_A 246 RTEREVLAQSKLNLAYNTD-IYY-GDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDG 323 (425)
T ss_dssp EEEEEECSSEEEEEEEECC-CCT-TSTTHHHHHHHHHHHTTSTTSHHHHHTTTTSCCCSEEEEEEETTTTEEEEEEEECG
T ss_pred EEecCCccccEEEEEeecC-CCC-CCchHHHHHHHHHHhCCChhhHHHHHHHHhcCeEEEEeccccccCceEEEEEecCH
Confidence 0 00 00112111 111 1123456777888887665667998887651 11 112233333333
Q ss_pred CccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004392 291 DPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEE 327 (756)
Q Consensus 291 ~~~~~~~~~~~~~e~l~~~~~~~t~~el~~~k~~~~~ 327 (756)
+ ...+......+++.+....++|++||+++|+.+..
T Consensus 324 ~-~~~~~~~~~~~~l~~l~~~~~~~~el~~ak~~~~~ 359 (425)
T 3d3y_A 324 K-NRNQVLRLISTELENIRLGKIRELEIEQTKAMLKN 359 (425)
T ss_dssp G-GHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2 22333333333333334568999999999997664
No 35
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.62 E-value=1.5e-15 Score=146.86 Aligned_cols=142 Identities=13% Similarity=0.048 Sum_probs=118.9
Q ss_pred eCCCeeEEEeecccccCCCCcccHHHHHHHHhc---CccchhhhhhcCCCCCccccccC--CCceEEEEEeeCCC--hhh
Q 004392 614 IPTQVNYVGKAANIFETGYKLNGSAYVISKHIS---NVWLWDRVRVSGGAYGGFCDFDS--HSGVFSFLSYRDPN--LLK 686 (756)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~d~~al~vl~~iLg---~s~L~~~iRekglaYg~~~~~~~--~~g~~~~~~~~~~~--~~~ 686 (756)
.+.++.++.++|+++++++++++++.|++.+|| +|+||++|||+|+||++++++.. ..|.|.+++..+|. .++
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLggg~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~ 99 (197)
T 3ih6_A 20 RAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDK 99 (197)
T ss_dssp --CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHSSTTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSCHHH
T ss_pred CCCCCceEEEEEecCCCCCCcHHHHHHHHHHHcCCCCchHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCCHHH
Confidence 356788999999999999999999999999998 58999999999999999987754 46777777777774 677
Q ss_pred HHHHHHhHHHHHhcCCCCHHHHHHHHHHHHhhcccC-CChhHHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Q 004392 687 TLDIYDGTVDFLRELEMDDDTLTKAIIGTIGDVDAY-QLPDAKGYSSLLRHLLGITEEERQRRREEILSTR 756 (756)
Q Consensus 687 ~~~~~~~~~~~l~~~~it~~eL~~ak~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~vt 756 (756)
+.+.+.+.++.+++.++|++||++||..+++++... .++...+.......+.| +.+...++.+.|.+||
T Consensus 100 ~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g-~~~~~~~~~~~i~~vT 169 (197)
T 3ih6_A 100 ALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASG-DWRLFFLQRDRVREAK 169 (197)
T ss_dssp HHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTT-CTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCC
Confidence 888888888888889999999999999999999865 57877777766666666 5567788888888886
No 36
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=96.61 E-value=0.042 Score=51.66 Aligned_cols=167 Identities=9% Similarity=0.092 Sum_probs=96.6
Q ss_pred EEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCCCCHHHHHHHHhhcccceEEeeeeccCCCCCCCceEEEEEEEeccc
Q 004392 381 VLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAG 460 (756)
Q Consensus 381 ~v~~~~~~~~~~l~~~~~~~~~l~~~~l~~~Gt~~~~~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 460 (756)
..++.+.+.......++...+.++..+|.. |...+=+.+|.+ .|...+++...... .....+.+++.+.++
T Consensus 24 ~~~v~~~~~~~~~~~~d~~al~vl~~iLgg-g~sSrL~~~lre----~gl~y~~~~~~~~~----~~~g~~~i~~~~~~~ 94 (197)
T 3ih6_A 24 TPLVAAMYHLPAAGSPDFVGLDLAATILAD-TPSSRLYHALVP----TKLASGVFGFTMDQ----LDPGLAMFGAQLQPG 94 (197)
T ss_dssp SCEEEEEEECCCTTSTTHHHHHHHHHHHHS-STTSHHHHHHTT----TTSCSEEEEEEETT----SSSCEEEEEEECCTT
T ss_pred CceEEEEEecCCCCCCcHHHHHHHHHHHcC-CCCchHHHHHHh----cCceEEEEeccccc----cCCeEEEEEEEECCC
Confidence 445566665544444444566777776663 543332333332 23333333322111 124578888888887
Q ss_pred -cHHHHHHHHHHHHhc---CCCCcHHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhccChhhHHHHHhccchHHHHHHH
Q 004392 461 -QAEDLFNLFNCVLQE---VQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQA 536 (756)
Q Consensus 461 -~l~~~l~ll~~~l~~---p~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 536 (756)
+++++++.+.+.+.+ -.+++ +++..++.+.+..+...... ....+.......+.. .+ ....++++.
T Consensus 95 ~~~~~~~~~i~~~l~~l~~~~it~-~el~~ak~~~~~~~~~~~~~-~~~~a~~l~~~~~~g-~~-------~~~~~~~~~ 164 (197)
T 3ih6_A 95 MDQDKALQTLTATLESLSSKPFSQ-EELERARSKWLTAWQQTYAD-PEKVGVALSEAIASG-DW-------RLFFLQRDR 164 (197)
T ss_dssp SCHHHHHHHHHHHHHCTTTSCCCH-HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHHHHHTT-CT-------THHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHcC-CH-------HHHHHHHHH
Confidence 699999998887755 35775 77888888888777665543 344444443333221 10 011122232
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCc
Q 004392 537 LEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADG 573 (756)
Q Consensus 537 l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~i~v~Gd~ 573 (756)
+.. .+.++++++.++++.+++.+++++|-.
T Consensus 165 i~~-------vT~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 165 VRE-------AKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHT-------CCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHh-------CCHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 211 135789999999999999998888754
No 37
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=41.64 E-value=65 Score=20.35 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=18.9
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHHHHHHH
Q 004392 303 KEILAK-VKSSMTKEDLAELARATEELR 329 (756)
Q Consensus 303 ~e~l~~-~~~~~t~~el~~~k~~~~~~~ 329 (756)
+..++. .++||+++|+..+..++.++.
T Consensus 6 kselqalkkegfspeelaaleselqale 33 (48)
T 1g6u_A 6 KSELQALKKEGFSPEELAALESELQALE 33 (48)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 334444 489999999988877666543
No 38
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=21.11 E-value=92 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=16.1
Q ss_pred hHHHHHhcCCCCHHHHHHHHH
Q 004392 693 GTVDFLRELEMDDDTLTKAII 713 (756)
Q Consensus 693 ~~~~~l~~~~it~~eL~~ak~ 713 (756)
+=++.|...|+|++|++.|-.
T Consensus 32 ~K~~FL~sKGLt~~EI~~Al~ 52 (54)
T 3ff5_A 32 TRRAFLKKKGLTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 445667778999999998854
Done!