Query 004393
Match_columns 756
No_of_seqs 161 out of 450
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 22:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06046 Sec6: Exocyst complex 100.0 6.8E-90 1.5E-94 797.0 23.5 541 176-741 1-566 (566)
2 KOG2286 Exocyst complex subuni 100.0 4.5E-82 9.7E-87 702.1 62.6 638 12-742 2-665 (667)
3 COG5173 SEC6 Exocyst complex s 100.0 1.1E-79 2.3E-84 642.2 63.7 707 13-747 3-741 (742)
4 KOG2180 Late Golgi protein sor 100.0 2.8E-48 6.1E-53 419.5 55.0 633 12-724 19-739 (793)
5 PF04100 Vps53_N: Vps53-like, 100.0 6.1E-28 1.3E-32 261.5 33.2 345 13-423 5-382 (383)
6 KOG0412 Golgi transport comple 99.8 1.1E-13 2.3E-18 152.2 54.5 302 396-707 424-772 (773)
7 PF10191 COG7: Golgi complex c 99.3 2E-06 4.3E-11 102.4 56.3 607 13-703 11-765 (766)
8 PF07393 Sec10: Exocyst comple 98.8 0.00055 1.2E-08 81.9 48.9 389 311-710 200-706 (710)
9 KOG2176 Exocyst complex, subun 98.7 0.0016 3.5E-08 74.5 56.3 640 30-701 45-759 (800)
10 PF04437 RINT1_TIP1: RINT-1 / 98.6 5.9E-06 1.3E-10 94.4 24.8 385 278-672 3-448 (494)
11 PF06419 COG6: Conserved oligo 98.0 0.081 1.7E-06 62.1 40.4 111 331-453 303-414 (618)
12 PF06248 Zw10: Centromere/kine 97.9 0.1 2.2E-06 61.2 41.6 125 27-153 8-136 (593)
13 PF05664 DUF810: Protein of un 97.8 0.0017 3.8E-08 75.4 21.2 209 274-487 382-604 (677)
14 PF10474 DUF2451: Protein of u 97.0 0.12 2.6E-06 52.8 20.2 197 512-718 22-232 (234)
15 PF04091 Sec15: Exocyst comple 96.9 0.032 6.9E-07 59.6 15.9 260 434-701 28-308 (311)
16 PF10475 DUF2450: Protein of u 96.6 0.62 1.3E-05 49.5 23.1 139 14-153 15-155 (291)
17 KOG2218 ER to golgi transport 96.1 4.1 8.8E-05 47.3 52.2 168 532-703 548-734 (737)
18 PF04048 Sec8_exocyst: Sec8 ex 96.1 0.26 5.6E-06 46.2 14.9 100 30-129 37-140 (142)
19 KOG3758 Uncharacterized conser 96.1 3.6 7.8E-05 46.7 36.4 75 15-89 19-95 (655)
20 KOG1011 Neurotransmitter relea 94.0 14 0.00029 42.1 22.6 179 323-507 667-857 (1283)
21 smart00762 Cog4 COG4 transport 92.1 2.3 4.9E-05 45.9 13.2 80 395-476 234-313 (324)
22 PF10392 COG5: Golgi transport 91.9 7.1 0.00015 36.1 14.5 110 14-123 10-124 (132)
23 KOG2286 Exocyst complex subuni 90.8 2.1 4.5E-05 49.9 11.7 122 600-724 233-359 (667)
24 PF08318 COG4: COG4 transport 90.6 3.2 6.8E-05 45.0 12.5 115 362-476 190-319 (331)
25 PF01843 DIL: DIL domain; Int 90.5 1.7 3.6E-05 38.4 8.6 97 604-702 2-98 (105)
26 PF15469 Sec5: Exocyst complex 89.8 21 0.00045 34.9 17.3 136 47-195 2-149 (182)
27 PF08700 Vps51: Vps51/Vps67; 87.0 11 0.00024 31.7 10.9 75 14-89 8-82 (87)
28 PF09763 Sec3_C: Exocyst compl 84.5 58 0.0013 39.2 19.4 163 30-199 2-180 (701)
29 PF04100 Vps53_N: Vps53-like, 79.0 1.1E+02 0.0024 33.8 18.4 79 136-225 134-218 (383)
30 KOG3745 Exocyst subunit - Sec1 77.1 1.6E+02 0.0036 34.9 45.5 125 577-707 626-750 (763)
31 KOG3691 Exocyst complex subuni 76.8 1.8E+02 0.0039 35.1 21.6 184 532-724 775-973 (982)
32 COG1579 Zn-ribbon protein, pos 76.7 93 0.002 31.8 19.8 42 28-70 12-53 (239)
33 PF04912 Dynamitin: Dynamitin 76.6 88 0.0019 34.7 16.0 48 71-118 294-341 (388)
34 PF07889 DUF1664: Protein of u 76.6 21 0.00046 32.5 9.1 24 29-52 57-80 (126)
35 PF04124 Dor1: Dor1-like famil 76.2 1.2E+02 0.0026 32.9 34.0 99 27-129 8-114 (338)
36 PF14923 CCDC142: Coiled-coil 74.4 55 0.0012 36.6 13.3 70 578-648 278-348 (450)
37 PF10112 Halogen_Hydrol: 5-bro 72.1 1.1E+02 0.0023 30.4 14.0 118 50-198 70-188 (199)
38 PF08317 Spc7: Spc7 kinetochor 67.4 68 0.0015 34.6 12.1 16 167-182 276-291 (325)
39 KOG3691 Exocyst complex subuni 65.5 3.1E+02 0.0068 33.2 17.3 105 25-129 42-150 (982)
40 PF06148 COG2: COG (conserved 63.2 12 0.00026 34.5 4.8 103 30-132 27-130 (133)
41 KOG3958 Putative dynamitin [Cy 63.0 2E+02 0.0043 30.1 14.5 55 69-123 274-328 (371)
42 KOG0994 Extracellular matrix g 62.6 4E+02 0.0086 33.4 22.0 10 55-64 1563-1572(1758)
43 PF01153 Glypican: Glypican; 61.1 68 0.0015 37.3 11.3 86 561-650 111-198 (557)
44 PF07889 DUF1664: Protein of u 59.7 1.4E+02 0.0031 27.3 11.7 46 76-123 65-110 (126)
45 PF10498 IFT57: Intra-flagella 57.9 2.9E+02 0.0062 30.3 17.8 21 133-153 322-342 (359)
46 KOG2307 Low density lipoprotei 57.5 3.5E+02 0.0075 31.1 50.1 74 578-651 575-678 (705)
47 PF11264 ThylakoidFormat: Thyl 57.2 1.7E+02 0.0036 29.5 11.7 122 580-715 1-124 (216)
48 PF15290 Syntaphilin: Golgi-lo 57.0 2.4E+02 0.0051 29.3 12.7 28 171-203 146-173 (305)
49 KOG1118 Lysophosphatidic acid 56.8 2.4E+02 0.0051 29.8 12.8 34 105-156 128-161 (366)
50 PF03908 Sec20: Sec20; InterP 55.8 1E+02 0.0022 26.3 8.9 58 48-105 12-69 (92)
51 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.6 1.4E+02 0.003 27.5 10.4 61 3-68 33-93 (132)
52 PF02845 CUE: CUE domain; Int 55.0 29 0.00062 24.8 4.5 27 680-706 4-31 (42)
53 KOG0811 SNARE protein PEP12/VA 54.6 2.7E+02 0.0059 29.0 17.5 28 166-193 186-213 (269)
54 KOG0517 Beta-spectrin [Cytoske 54.1 6.7E+02 0.015 33.4 20.1 96 10-113 398-501 (2473)
55 PF07106 TBPIP: Tat binding pr 53.0 1.8E+02 0.0039 27.9 11.2 87 24-112 70-158 (169)
56 PRK13266 Thf1-like protein; Re 52.7 2.4E+02 0.0053 28.5 12.1 116 578-707 4-121 (225)
57 smart00787 Spc7 Spc7 kinetocho 52.5 2.2E+02 0.0047 30.5 12.5 15 168-182 272-286 (312)
58 PLN03060 inositol phosphatase- 52.2 2.5E+02 0.0054 28.1 11.8 122 579-715 3-126 (206)
59 PF15290 Syntaphilin: Golgi-lo 52.1 2.3E+02 0.005 29.4 11.7 47 65-111 117-164 (305)
60 PF08580 KAR9: Yeast cortical 51.0 3.7E+02 0.0081 32.2 15.3 44 55-98 33-76 (683)
61 PF10191 COG7: Golgi complex c 51.0 5.4E+02 0.012 31.4 33.5 86 333-420 216-304 (766)
62 smart00546 CUE Domain that may 49.5 37 0.00081 24.3 4.4 27 680-706 5-32 (43)
63 PF10602 RPN7: 26S proteasome 47.6 2.1E+02 0.0046 27.8 10.7 96 29-124 3-102 (177)
64 PF04156 IncA: IncA protein; 47.2 2.8E+02 0.0061 27.0 13.8 31 29-60 84-114 (191)
65 PF04124 Dor1: Dor1-like famil 46.4 4E+02 0.0087 28.8 13.8 53 38-90 12-64 (338)
66 PRK02224 chromosome segregatio 46.2 6.7E+02 0.014 31.1 22.2 27 65-91 206-232 (880)
67 PF02650 HTH_WhiA: WhiA C-term 45.2 86 0.0019 26.5 6.5 62 659-722 23-84 (85)
68 PF10157 DUF2365: Uncharacteri 44.2 2.1E+02 0.0045 27.0 9.5 97 24-120 50-147 (149)
69 PF06008 Laminin_I: Laminin Do 43.2 4E+02 0.0086 27.6 14.7 122 31-153 136-262 (264)
70 KOG0517 Beta-spectrin [Cytoske 42.1 1E+03 0.022 31.9 19.2 126 54-190 1667-1819(2473)
71 KOG0018 Structural maintenance 41.0 3.5E+02 0.0075 33.6 12.8 92 25-118 651-744 (1141)
72 cd07636 BAR_GRAF The Bin/Amphi 41.0 3.8E+02 0.0083 26.8 13.7 62 99-163 30-91 (207)
73 KOG1328 Synaptic vesicle prote 38.8 7.5E+02 0.016 29.5 35.6 126 561-686 790-924 (1103)
74 PF08649 DASH_Dad1: DASH compl 38.6 1.9E+02 0.0041 22.6 7.7 41 55-95 16-56 (58)
75 PHA03332 membrane glycoprotein 38.5 5.4E+02 0.012 31.9 13.6 42 57-98 876-917 (1328)
76 TIGR03060 PS_II_psb29 photosys 38.1 4.3E+02 0.0094 26.5 11.5 114 578-705 4-119 (214)
77 PLN02939 transferase, transfer 38.1 9E+02 0.019 30.2 19.8 43 8-54 148-191 (977)
78 KOG4514 Uncharacterized conser 37.9 3.8E+02 0.0083 25.9 12.0 41 81-121 181-221 (222)
79 PF05531 NPV_P10: Nucleopolyhe 37.9 1.1E+02 0.0024 25.2 5.7 23 57-79 20-42 (75)
80 PF05667 DUF812: Protein of un 37.7 7.4E+02 0.016 29.2 18.1 37 31-68 319-355 (594)
81 PLN00047 photosystem II biogen 37.0 2.4E+02 0.0052 29.5 9.4 113 577-703 54-168 (283)
82 PF10828 DUF2570: Protein of u 36.9 1.9E+02 0.0042 25.6 7.9 34 89-122 74-109 (110)
83 PHA03332 membrane glycoprotein 36.4 9.5E+02 0.021 30.0 16.1 85 65-153 874-962 (1328)
84 PF04912 Dynamitin: Dynamitin 36.3 6.3E+02 0.014 27.9 14.4 18 174-191 354-371 (388)
85 PF10158 LOH1CR12: Tumour supp 35.8 3.6E+02 0.0077 24.9 12.2 17 105-121 97-113 (131)
86 cd07639 BAR_ACAP1 The Bin/Amph 35.6 4.6E+02 0.0099 26.1 13.1 82 67-163 4-85 (200)
87 PF08654 DASH_Dad2: DASH compl 34.6 3E+02 0.0064 24.2 8.4 52 35-86 3-59 (103)
88 PF10157 DUF2365: Uncharacteri 33.8 4.1E+02 0.009 25.1 13.3 13 84-96 97-109 (149)
89 PF12718 Tropomyosin_1: Tropom 33.3 4.1E+02 0.0088 24.8 13.2 48 76-123 60-108 (143)
90 KOG2148 Exocyst protein Sec3 [ 30.9 9.5E+02 0.021 28.3 15.3 66 32-98 192-258 (867)
91 PF08362 TetR_C_3: YcdC-like p 30.7 1.4E+02 0.0031 27.9 6.3 92 628-722 43-136 (143)
92 PRK07739 flgK flagellar hook-a 30.5 8.9E+02 0.019 27.9 14.2 30 7-37 94-123 (507)
93 COG0216 PrfA Protein chain rel 30.1 6E+02 0.013 27.4 11.1 64 73-137 8-71 (363)
94 PF03474 DMA: DMRTA motif; In 30.0 58 0.0013 23.1 2.6 26 682-707 6-32 (39)
95 PF04011 LemA: LemA family; I 29.9 5.3E+02 0.011 25.1 12.8 99 29-128 34-159 (186)
96 PF10168 Nup88: Nuclear pore c 29.7 9.6E+02 0.021 29.0 14.4 53 32-84 546-598 (717)
97 PRK04778 septation ring format 29.3 9.7E+02 0.021 28.0 20.7 138 14-153 49-205 (569)
98 PF10241 KxDL: Uncharacterized 28.2 3.7E+02 0.0081 22.8 9.4 66 24-89 9-81 (88)
99 TIGR02132 phaR_Bmeg polyhydrox 27.4 4.2E+02 0.0091 25.6 8.5 30 22-51 68-97 (189)
100 KOG2346 Uncharacterized conser 27.3 2E+02 0.0044 32.3 7.4 106 20-129 40-153 (636)
101 PF10805 DUF2730: Protein of u 27.1 2.4E+02 0.0052 24.9 6.7 31 20-50 29-59 (106)
102 PRK00578 prfB peptide chain re 27.1 8E+02 0.017 26.9 12.0 61 74-135 25-85 (367)
103 KOG4286 Dystrophin-like protei 27.0 9.4E+02 0.02 28.8 12.8 37 67-103 222-258 (966)
104 PF05667 DUF812: Protein of un 26.9 1.1E+03 0.024 27.8 24.2 42 9-50 376-418 (594)
105 PF05478 Prominin: Prominin; 26.9 1.3E+03 0.027 28.5 21.0 96 16-115 183-287 (806)
106 PF10475 DUF2450: Protein of u 26.8 7.6E+02 0.017 25.9 21.2 10 104-113 90-99 (291)
107 PF09164 VitD-bind_III: Vitami 26.7 33 0.00071 27.1 1.0 24 683-706 21-44 (68)
108 COG5173 SEC6 Exocyst complex s 26.7 8.9E+02 0.019 27.9 12.2 100 13-123 16-115 (742)
109 PF11571 Med27: Mediator compl 26.5 98 0.0021 26.4 4.0 49 322-376 4-52 (90)
110 TIGR01005 eps_transp_fam exopo 26.2 1.2E+03 0.027 28.1 15.9 18 33-50 288-305 (754)
111 PHA02562 46 endonuclease subun 25.7 1.1E+03 0.023 27.3 17.4 15 145-159 298-312 (562)
112 PF02609 Exonuc_VII_S: Exonucl 25.7 2.9E+02 0.0064 20.8 6.4 49 28-84 5-53 (53)
113 PF07426 Dynactin_p22: Dynacti 25.7 6.2E+02 0.014 24.5 15.5 32 55-86 37-68 (174)
114 KOG4331 Polytopic membrane pro 24.6 1.3E+03 0.029 28.0 13.6 16 578-593 741-756 (865)
115 PF10046 BLOC1_2: Biogenesis o 24.5 4.7E+02 0.01 22.7 12.3 66 48-113 7-77 (99)
116 PF10158 LOH1CR12: Tumour supp 24.4 5.6E+02 0.012 23.6 12.6 52 72-123 56-108 (131)
117 cd07633 BAR_OPHN1 The Bin/Amph 24.4 7.2E+02 0.016 24.8 13.4 88 67-163 4-91 (207)
118 PF08651 DASH_Duo1: DASH compl 24.3 4.2E+02 0.009 22.0 8.6 37 73-109 23-60 (78)
119 PF04799 Fzo_mitofusin: fzo-li 24.3 5.1E+02 0.011 25.0 8.7 19 37-55 102-120 (171)
120 PF11932 DUF3450: Protein of u 24.1 7.9E+02 0.017 25.2 16.5 87 25-115 20-107 (251)
121 COG4477 EzrA Negative regulato 23.9 1.1E+03 0.025 27.0 21.8 63 25-88 228-297 (570)
122 PF00522 VPR: VPR/VPX protein; 23.8 63 0.0014 27.9 2.3 33 310-342 21-55 (96)
123 KOG0996 Structural maintenance 23.5 1.6E+03 0.035 28.5 21.8 18 139-156 935-952 (1293)
124 PF05781 MRVI1: MRVI1 protein; 23.3 1.2E+03 0.026 26.9 14.1 68 38-106 218-289 (538)
125 PF05377 FlaC_arch: Flagella a 22.6 3.7E+02 0.0079 20.8 7.1 40 38-78 5-44 (55)
126 KOG2534 DNA polymerase IV (fam 22.6 2E+02 0.0043 30.6 6.0 110 84-211 21-134 (353)
127 TIGR03185 DNA_S_dndD DNA sulfu 22.6 1.3E+03 0.029 27.3 15.8 144 9-179 373-518 (650)
128 PLN03094 Substrate binding sub 22.2 1.1E+03 0.023 26.0 15.6 23 99-121 290-312 (370)
129 KOG0243 Kinesin-like protein [ 22.0 1.6E+03 0.036 28.1 15.8 46 67-112 541-588 (1041)
130 KOG4182 Uncharacterized conser 22.0 1.2E+03 0.025 26.4 33.0 140 13-153 12-162 (828)
131 PF03915 AIP3: Actin interacti 22.0 1.1E+03 0.025 26.3 13.1 23 25-47 222-245 (424)
132 KOG4514 Uncharacterized conser 21.8 7.4E+02 0.016 24.0 9.8 21 31-51 163-183 (222)
133 KOG0810 SNARE protein Syntaxin 21.5 9.9E+02 0.021 25.4 18.3 29 169-197 215-243 (297)
134 TIGR01280 xseB exodeoxyribonuc 21.2 2.6E+02 0.0055 22.5 5.2 53 26-86 5-57 (67)
135 PHA03386 P10 fibrous body prot 21.2 5E+02 0.011 22.3 6.9 33 54-86 25-57 (94)
136 PRK10807 paraquat-inducible pr 21.1 1E+03 0.022 27.7 12.2 19 67-85 445-463 (547)
137 smart00787 Spc7 Spc7 kinetocho 20.9 1E+03 0.023 25.4 12.4 85 28-112 167-252 (312)
138 PF09731 Mitofilin: Mitochondr 20.9 1.1E+03 0.024 27.5 12.8 36 31-66 309-344 (582)
139 PRK04863 mukB cell division pr 20.5 2.1E+03 0.045 28.8 21.2 89 13-103 421-510 (1486)
140 PF00038 Filament: Intermediat 20.2 1E+03 0.022 25.0 15.8 63 27-89 166-233 (312)
No 1
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=100.00 E-value=6.8e-90 Score=797.03 Aligned_cols=541 Identities=29% Similarity=0.502 Sum_probs=287.8
Q ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhhhhhhhHHHHHHHHHHccCcccccccCcccccccccccc
Q 004393 176 FEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAKKSTTAT 255 (756)
Q Consensus 176 F~~v~~l~~~f~~~l~~~~~~~l~~~~~~p~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 255 (756)
|++|+.+++.|+++||.++++++++|+.+|++||+|+||||+||++|+++.... ......
T Consensus 1 F~~v~~l~~~~~~~l~~i~~~~l~~~~~~~~~lv~~~~Iie~EE~~D~~~~~~~--------------------~~~~~~ 60 (566)
T PF06046_consen 1 FEDVDELSDEFEKQLWSIVRNSLELVRSDPELLVRAVRIIEREERADERAAARQ--------------------EAQSFQ 60 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhHHHHHHh--------------------hhhccc
Confidence 899999999999999999999999999999999999999999999999987520 000001
Q ss_pred cccCcchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHhhccccCCCcchHHH
Q 004393 256 ISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFED-LKAALEEARTIGEELADIYDYVAPCFPPRYEIFQ 334 (756)
Q Consensus 256 ~~~~~~~~~~~~~~pr~~k~~~~~~l~~sv~~~~~~~~~~~~~~d-~~~~L~~~~~~~~dL~~v~~~~~~~fP~~~~I~~ 334 (756)
.+.+.+....++++||+||++|+++|+.+|++||+.+...+.++. +...|+.++|+++||..|++.++|||||+|+||+
T Consensus 61 ~~~f~~~~~~~~~rpr~~r~~~~~~l~~sv~~~~~~~~~~~~~~~~l~~~l~~l~~~~~DL~~v~~~~~~cfPp~~~I~~ 140 (566)
T PF06046_consen 61 AARFRSINQGPPGRPRNWRQKFFEALRESVEERFEQAEEREENKSWLARHLEALRWVLEDLQVVKDDVVPCFPPEYDIFN 140 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhCcccCCCCChHHH
Confidence 111222234678999999999999999999999996655443322 4456788789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhHHHHHHHhcCCCC-cccccccCCCCchhhHHHHHHHHHHHHHHH
Q 004393 335 LMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVD-ESLAQVCSESGAMDPLMNSYVERMQATTKK 413 (756)
Q Consensus 335 ~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l~~l~i~-~~~l~~ll~~~~~~~L~~~Y~~~~~~~l~e 413 (756)
+|+.+||.+++++|+++. .+++++++++.||+|+..|++.|+..++. .+.++|+++++.++.|+++|++.++.+|++
T Consensus 141 ~y~~~YH~~l~~~l~~l~--~~~l~~~~ll~ll~W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~e 218 (566)
T PF06046_consen 141 TYVSMYHNALSDHLQELI--SPDLEANDLLSLLSWVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKE 218 (566)
T ss_dssp -----------------------------------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--cCCCCHHHHhhheechhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999997 67999999999999977799988876555 778899999999999999999999999999
Q ss_pred HHHHHHhhcc-----cCCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 004393 414 WYLNILDADK-----VQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMIDFQAAERERLAEP 488 (756)
Q Consensus 414 wl~~~l~~er-----~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~~f~~~~~~~l~~~ 488 (756)
|+.|+++.|+ +.+|+.|.+|+|+|++|+|+||||+||+++|.....+.++..++..+...|..|+..+.+.++++
T Consensus 219 W~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~~~~~~ 298 (566)
T PF06046_consen 219 WMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQEFKEEH 298 (566)
T ss_dssp HHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999996 67999999999999999999999999999997777765555566666666666666665554322
Q ss_pred -----------CCCCCchhhHHhccchHHhHHHHHHHHHHhhhhCCcchhhhc--chHHHhhhHHHHHHHHHHHHHHHHh
Q 004393 489 -----------APEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQV--NFEDACKGFLEVTKEAVRHTLNVIF 555 (756)
Q Consensus 489 -----------~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~~v~~~~~~~i--~~~~~~~~f~~l~~~~~~~L~~~i~ 555 (756)
.++.+.+|+||++|||.+|.++++++..++.+.++++|.+.+ +++.+.++|.++++.|++.|++.+|
T Consensus 299 ~~~~~~~~~~~~~~~~~eyliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if 378 (566)
T PF06046_consen 299 FKDRSSVKPKENPPGYLEYLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIF 378 (566)
T ss_dssp HHHHHHHHHCC--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccccccccchHHHHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 236779999999999999999999999999998888887653 6789999999999999999999999
Q ss_pred cCCCchHHHhhhccccccCcchhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc-----cHH
Q 004393 556 EDPGVEQLLVKLYQKEWSDGQVTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYI-----REL 630 (756)
Q Consensus 556 ~d~~l~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~-----~~~ 630 (756)
.| ++|+|+++||++||++++|++||.|++||++||+.||++++|+.|++++++++|.+|+++|+++|..+ ++.
T Consensus 379 ~D--l~p~~~~Lft~~W~~~~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~ 456 (566)
T PF06046_consen 379 ND--LKPHFKKLFTKKWYSGEAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKE 456 (566)
T ss_dssp HC--THHHHCTTTSGGGCTS-HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCC
T ss_pred HH--hHHHHHHhCcCcCcCcchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH
Confidence 99 99999999999999998899999999999999997799999999999999999999999999987543 578
Q ss_pred HHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHh
Q 004393 631 TIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKD 710 (756)
Q Consensus 631 ~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~ 710 (756)
+|++|++|++.+++||.++++.+.+.+.+.+|+.|++++.++|++++.++|.+|++.|||++.+||++||.+|||++|++
T Consensus 457 ~a~~i~~D~~~l~~~F~~~~~~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~~r~~ 536 (566)
T PF06046_consen 457 AAERIRRDAEQLKSFFSKLGSKSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRGDLSRSE 536 (566)
T ss_dssp CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT--HHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHH
Confidence 99999999999999999999877788999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCccccccc
Q 004393 711 AKEVLQECKEIYENSLVNGHPPKAGFVFSRV 741 (756)
Q Consensus 711 ~~~~l~~~~~~~~~~l~~~~~~~~~~ifs~i 741 (756)
++++++.+++...+....++||+|+ |||+|
T Consensus 537 ~~~il~~~~~~~~~~~~~~~~~~~~-ifs~i 566 (566)
T PF06046_consen 537 VKEILEILREIIKSYPANAEPPPPT-IFSRI 566 (566)
T ss_dssp HHHHHHHHHHHHHHHHCCCH------GGGG-
T ss_pred HHHHHHHHHHHhhccccccCCCCCC-CCCCC
Confidence 9999999999988765444445555 99986
No 2
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-82 Score=702.07 Aligned_cols=638 Identities=31% Similarity=0.490 Sum_probs=547.0
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004393 12 EAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC 91 (756)
Q Consensus 12 ~~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (756)
.+|+..|++++++|++|++|+.++.+..+++++++++||++++.|.++++.|+..+......++.
T Consensus 2 ~aal~~v~~ll~~~~~l~~l~~~~~r~~~~~~~~ea~lkt~~~~~~~~v~~~l~~l~~~~~~~~~--------------- 66 (667)
T KOG2286|consen 2 DAALTQVADLLRRPSSLEKLPSIKARAAREKEAVEAQLKTMVQKQYEGVEKGLKNLSTSETDIKG--------------- 66 (667)
T ss_pred CchhhHHHHHHhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------------
Confidence 46899999999999999999999999999999999999999999999999999999988888771
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCC---hhHHHHHHHHHHHHhhHHHHHHHhh----h
Q 004393 92 QTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDD---KELINTYERLTALDGKRRFALAAAE----S 164 (756)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~---~~Ll~ah~~L~~Le~~Rd~~l~~~~----~ 164 (756)
..+++.++++++..+..+.+....+..+ .+|+.||.+|.+++..|+.++++.. +
T Consensus 67 -------------------~~~~~~n~~~~~n~~~~~~e~~~~~~~~~~~~~l~~a~~~l~dl~~sr~~l~~e~~~~aa~ 127 (667)
T KOG2286|consen 67 -------------------YATAMSNLKHIFNLVADVQEIRMLLDAEKAKDELLLAHDHLLDLEPSRDELLYEVHVMAAE 127 (667)
T ss_pred -------------------HHHHHHHhhhhhhchhHHHHHHHHHhcccccchhhhcCHHHHHHHhhhHHHHHHHHHHhHh
Confidence 3334566777777777666666555443 3699999999999999998888643 3
Q ss_pred chHH-HHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhhhhhhhHHHHHHHHHHccCcccccccC
Q 004393 165 HKEE-VGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISN 243 (756)
Q Consensus 165 ~~~~-~~~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~~p~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~~ 243 (756)
...| ..++.++|+.++.+++.|++.+|.++.+.+++++. |+.+|+++||||+||+.|+.+... +
T Consensus 128 ~~~D~~~~~~~~f~~v~~~~~ef~K~l~~~~~~~~~~~k~-pe~~v~alrIVe~eE~~D~~~~~~---~----------- 192 (667)
T KOG2286|consen 128 AAGDAQTTLRNDFSSVDSASQEFEKNLWGILSRILEMVKS-PEKLVQALRIVEREEIEDEQAMEA---R----------- 192 (667)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHhc---c-----------
Confidence 3334 56677799999999999999999999999999999 999999999999999999998742 1
Q ss_pred cccccccccccccccCcchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHH-hh-hhhHHHHH-HHHH-HHHHHHHHHH
Q 004393 244 PRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTE-LV-FEDLKAAL-EEAR-TIGEELADIY 319 (756)
Q Consensus 244 ~~~~~k~~~~~~~~~~~~~~~~~~~~pr~~k~~~~~~l~~sv~~~~~~~~~~-~~-~~d~~~~L-~~~~-~~~~dL~~v~ 319 (756)
.. ..+.|++|||+|+. +....+.+..|..+.... .. +..|...+ +..+ |+++||..++
T Consensus 193 ------~~----------~s~~~~~r~~~~~s--~~~~~r~vatR~~~~~~~~~a~n~~w~~~~~e~~r~~i~EdL~~~~ 254 (667)
T KOG2286|consen 193 ------PG----------NSSVPNPRPREWKS--LTRMSRTVATRVEGRQGKMRALNKEWQVRLLEVLRFVIREDLRVAK 254 (667)
T ss_pred ------cc----------cCCCCCCCCchHHH--HHHHhhhHHHHHHHhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12378899999999 666666677777655321 11 11122222 2222 9999999999
Q ss_pred hhccccCCCcchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhH-HHHHHHhcCCCCc-ccccccCCCCchh
Q 004393 320 DYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVV-EYQDNLIGLGVDE-SLAQVCSESGAMD 397 (756)
Q Consensus 320 ~~~~~~fP~~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~-~Y~~~l~~l~i~~-~~l~~ll~~~~~~ 397 (756)
..++|||||+|+||..|++.||+++++++..+. +.+++..+++.++.|+. .|+......++.. ..++|.+.++.+.
T Consensus 255 ~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~dl~--s~~l~~~eil~llawV~~~~~~~~l~~~~~~~~~l~p~l~~~~v~ 332 (667)
T KOG2286|consen 255 RVLVPCFPPHYNIFSAYLELYHQALSDLLRDLA--SEALELREILQLLAWVRNEYYTPLLQLNVDVLRALGPLLRPKHVV 332 (667)
T ss_pred HhhcccCCchhHHHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHHhcChhhhccchhhhhhcCccChhHHH
Confidence 999999999999999999999999999999998 56899999999999999 5776544333333 3478889999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHH
Q 004393 398 PLMNSYVERMQATTKKWYLNILDADKV-----QPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQ 472 (756)
Q Consensus 398 ~L~~~Y~~~~~~~l~ewl~~~l~~er~-----~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~ 472 (756)
.|++.|+++.+.++++|+.|+.+.|.. .+|+.|.+|+|+|++|+++|||+.+|+++++.++.+.+. .+...+.+
T Consensus 333 ~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~-~~~~~~~~ 411 (667)
T KOG2286|consen 333 ALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMITQQLQVAAATSSDLSG-KILRSLLS 411 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhhHHHHHHHHhhHHHHHH-HHHHHHHH
Confidence 999999999999999999999988853 799999999999999999999999999999999998877 88889999
Q ss_pred HHHHHHHHHHHHH----c---CCCCCCCchhhHHhccchHHhHHHHHHHHHHhhhhCCcchhhhcchHHHhhhHHHHHHH
Q 004393 473 VMIDFQAAERERL----A---EPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKE 545 (756)
Q Consensus 473 ~l~~f~~~~~~~l----~---~~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~~v~~~~~~~i~~~~~~~~f~~l~~~ 545 (756)
.+..|+..|.+.. + ...++++.+|+||++|||..|.++..++..++ + .+..+.++|..++++
T Consensus 412 ~v~~f~~~~~~~~~~~~e~~~~~~~~~l~~y~iA~~N~~~~~a~~~~~~~~~~---------d--~~~~~l~~~~~i~~~ 480 (667)
T KOG2286|consen 412 EVPSFARNYPKAQDEDQESHRREQPEGLREYLIANINNNLKMAMLMVNLKSKY---------D--TLKGLLDGFIEIAKH 480 (667)
T ss_pred HhHHHHHHHHHhHHHHHHhchhcccccHHHHHHHHHhchhHHHHHHHHHHhcc---------c--hhHHHhHHHHHHHHh
Confidence 9999999886643 1 22356778999999999999999998887665 1 245678999999999
Q ss_pred HHHHHHHHHhcCCCchHHHhhhccccccCcchhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004393 546 AVRHTLNVIFEDPGVEQLLVKLYQKEWSDGQVTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKN 625 (756)
Q Consensus 546 ~~~~L~~~i~~d~~l~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~ 625 (756)
++..|++.+|.| |+|+|+++||++|+.|+.++.||.|++||+.||+.++.+. |..|+++++.++|++|+++|+++|.
T Consensus 481 ~~~~l~e~~~~d--~~~~~~~lf~~~W~~g~~~~~Iv~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~l~~kr~ 557 (667)
T KOG2286|consen 481 GVSGLLEEIFLD--LQPLLNKLFTKEWCAGSVTENIVATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRALSKKRA 557 (667)
T ss_pred HHHHHHHHHHHH--HHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999999 9999999999999999889999999999999999766655 9999999999999999999999998
Q ss_pred cccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 004393 626 YIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDG 705 (756)
Q Consensus 626 ~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~D 705 (756)
.++ +++++|+.|++.++.||.+|++ ++++..+.+..|++++...||+.|.++|..|+..|||++.+|+++||.+|||
T Consensus 558 ~~~-~~~~~i~~d~~~~~~~f~~~~~--~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~d 634 (667)
T KOG2286|consen 558 SIQ-ELIEKIKSDAETLYHFFRKYGS--DVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKIRGD 634 (667)
T ss_pred hHH-HHHHHHHhhHHHHHHHHHHhCc--chhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcC
Confidence 756 9999999999999999999998 5678999999999999998999999999999999999999999999999999
Q ss_pred CChHhHHHHHHHHHHHHHhcccCCCCCCCcccccccc
Q 004393 706 IPRKDAKEVLQECKEIYENSLVNGHPPKAGFVFSRVK 742 (756)
Q Consensus 706 l~r~~~~~~l~~~~~~~~~~l~~~~~~~~~~ifs~i~ 742 (756)
+++++++.|++.+++...+.. |.. ++|+.+.
T Consensus 635 ls~~~~k~i~~~~~~~~~~~~----~~~--~~~~~~~ 665 (667)
T KOG2286|consen 635 LSRSEKKKIVDILKESMGSQE----PDR--PLFSDFV 665 (667)
T ss_pred CCHHHHHHHHHHHHHHHhhhC----cCC--CCccccC
Confidence 999999999999998777652 223 3666654
No 3
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-79 Score=642.16 Aligned_cols=707 Identities=17% Similarity=0.220 Sum_probs=593.9
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 004393 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (756)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (756)
.|+.++++.+++|.+|.++..+++++.+ ..+|.+.....--.+.. .|....+...++.....++.++|...+
T Consensus 3 ~~l~q~~~~~~~d~~l~~v~Di~eq~~k-----f~~l~~h~~~~~~e~~~---~ln~~~n~~~~i~~~~~e~~~l~e~~r 74 (742)
T COG5173 3 KALTQLSETLRHDSDLQTVLDIIEQSTK-----FEALEHHDGNLSAEISK---CLNNILNISKRIYGLEEELKSLVEGKR 74 (742)
T ss_pred hHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 5889999999999999999999988887 22333322111111111 577888999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhc-------cCChhHHHHHHHHHHHHhhHHHHHHHhh-h
Q 004393 93 TLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSL-------GDDKELINTYERLTALDGKRRFALAAAE-S 164 (756)
Q Consensus 93 ~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l-------~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~-~ 164 (756)
.+|+.|+-+-++...++|..+|-.+..+|..+-+..+..++++ .++||||.+|+.|..+++||.++..++. +
T Consensus 75 ~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied~l~~~l~eD~dmPnLl~~H~kl~~ardF~eq~~~~a~e~ 154 (742)
T COG5173 75 RNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIEDILGTVLTEDIDMPNLLAYHTKLYDARDFGEQLDMYATEI 154 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHccHHHHhHHHHHHHhhc
Confidence 9999999999999999999988776666666666555555555 3569999999999999999998877654 5
Q ss_pred chHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhhHHHHHhhhhhhhHHHHHHHHHHccCcccccccC
Q 004393 165 HKEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKES-PQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISN 243 (756)
Q Consensus 165 ~~~~~~~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~~-p~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~~ 243 (756)
+.|+..++.+-|+.++.++..|++.+..+..++++.|+.+ -+..+++++|+|.||+.|+....- .+ +...++
T Consensus 155 ~~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi~~~~~ifkIve~EE~~De~~~~I--rd----aks~lp- 227 (742)
T COG5173 155 SHDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDELTRKI--RD----AKSELP- 227 (742)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHH--HH----HHhcCC-
Confidence 6677889999999999999999999999999999999986 588999999999999999877431 00 000001
Q ss_pred ccccccccccc-ccccCcchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 004393 244 PRRSAKKSTTA-TISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEARTIGEELADIYDYV 322 (756)
Q Consensus 244 ~~~~~k~~~~~-~~~~~~~~~~~~~~~pr~~k~~~~~~l~~sv~~~~~~~~~~~~~~d~~~~L~~~~~~~~dL~~v~~~~ 322 (756)
+++..- ..+-.+-++.....+||+||+.....|..||++.|.+.+.++.++. ..+.++.|+++||..++..+
T Consensus 228 -----~SQD~P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~~yi~d~--sgelnmDfIf~dL~~i~e~i 300 (742)
T COG5173 228 -----KSQDNPVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNEYIFDN--SGELNMDFIFKDLSFIRENI 300 (742)
T ss_pred -----CcCCCcchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHhcC--cchhhhHHHHHHHHHHHHHc
Confidence 111000 0011112233456789999999999999999999999998876643 34566779999999999999
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhHHHHHHHh-cCCCCcccccccCCCCchhhHHH
Q 004393 323 APCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLI-GLGVDESLAQVCSESGAMDPLMN 401 (756)
Q Consensus 323 ~~~fP~~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l~-~l~i~~~~l~~ll~~~~~~~L~~ 401 (756)
+.||||+|+|+..|...|.+++...+.+.+ ..++++.++|.+++|+.+|++.++ ++|...+.++|.+.++.-+.|+.
T Consensus 301 ~~~~pp~~NI~~~y~~~YqecL~~L~td~v--~~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~dev~~~l~d~e~g~L~~ 378 (742)
T COG5173 301 SLSFPPFDNILTLYHNNYQECLLKLFTDEV--TERLDAGEILAIIEFVGNYYNTIESKFNFIADEVGGRLLDNETGELLE 378 (742)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHHHhCCccHHHhcccccCCcchHHHH
Confidence 999999999999999999999999999887 568999999999999999999997 89999999999999888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhc------ccCCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 004393 402 SYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMI 475 (756)
Q Consensus 402 ~Y~~~~~~~l~ewl~~~l~~e------r~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~ 475 (756)
+|+++.+.+|+||..|+...| |+.||+.|+||.|++|+.+.+||||.||+.+++..+......-|+..+...|.
T Consensus 379 ~Yt~l~~~Kl~EWv~nl~~~evd~F~~R~~ep~~Dsdg~l~l~Gt~~~fQmitqQ~e~ia~tn~sdvvgiV~~~i~~~~t 458 (742)
T COG5173 379 KYTKLAQEKLKEWVMNLTRIEVDKFYARNEEPSRDSDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFAHITRTIT 458 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCCcCccCccHHHHHHHHHHHhhhhhcCCccchhhhhHHHHHHHHH
Confidence 999999999999999998776 67899999999999999999999999999999987776666567788888999
Q ss_pred HHHHHHHHHHc---------CC--C-CCCCchhhHHhccchHHhHHHHHHHHHHhhhhCCcchhhhc--chHHHhhhHHH
Q 004393 476 DFQAAERERLA---------EP--A-PEIGLEPLCAMINNNLRCYDLAMELSTSTMEALPPNYAEQV--NFEDACKGFLE 541 (756)
Q Consensus 476 ~f~~~~~~~l~---------~~--~-~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~~v~~~~~~~i--~~~~~~~~f~~ 541 (756)
+++..|+..+. +| . |++..+|++|+.|++++|++|+..+..++.+.++.+|...+ .++...|||.+
T Consensus 459 k~q~~wks~l~ee~~kq~~~npEs~~p~Gl~eyliav~Nd~lK~A~y~~~~~sntfeLitseye~d~~~~lgkTvDgfi~ 538 (742)
T COG5173 459 KYQEIWKSNLVEEMDKQFKSNPESSSPAGLEEYLIAVGNDGLKIAQYITSLPSNTFELITSEYENDEVKELGKTVDGFID 538 (742)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccCCcchHHHHHHHHcCCcchHHHHHHhcchhhhhhhhHHHHHHHHHHhcccchhHHH
Confidence 99999987651 12 2 33567999999999999999999999999999998886654 57788899999
Q ss_pred HHHHHHHHHHHHHhcCCCchHHHhhhccccccCcchhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 004393 542 VTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDGQVTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLL 621 (756)
Q Consensus 542 l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~ 621 (756)
+++.+...|+..|+.| |+|++.++|++.||.|+.+..|+.|++||+.||+.+|.+..|..|++++...++..|+++|.
T Consensus 539 I~~~s~~~l~~~i~~d--~~pa~~~iF~~~Wy~gS~~k~IvdTl~dyl~D~~~~M~~~lFv~Fi~e~s~~~vi~yl~~l~ 616 (742)
T COG5173 539 ILKASNTFLAEFIIYD--CQPAIDKIFTDEWYGGSVTKVIVDTLQDYLSDYQNTMSEYLFVTFIHELSMSIVIAYLKQLG 616 (742)
T ss_pred HHhhhhHHHHHHHHHh--hhhhHHHhcCccccccchHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccc-cHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHH
Q 004393 622 TQKNYI-RELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLV 700 (756)
Q Consensus 622 ~~k~~~-~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL 700 (756)
+++..+ .+.|.++|+.|...+...|.+|+.+++++..+.++..+.-.+...|.+.+..+|..|...|||++.+.+.+||
T Consensus 617 ~k~a~~~~~na~~~lksD~~~~y~~f~~y~d~e~~k~tl~pI~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~Il 696 (742)
T COG5173 617 RKRASIAEENASRTLKSDHTKLYEMFSGYGDPEDVKTTLSPILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTIL 696 (742)
T ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHHH
Confidence 988755 3568999999999999999999999988888888777777777788889999999999999999999999999
Q ss_pred HhcCCCChHhHHHHHHHHHHHHHhcccCCCCCCCccccccccccccc
Q 004393 701 ALRDGIPRKDAKEVLQECKEIYENSLVNGHPPKAGFVFSRVKCLSAS 747 (756)
Q Consensus 701 ~~R~Dl~r~~~~~~l~~~~~~~~~~l~~~~~~~~~~ifs~i~~~~~~ 747 (756)
.+|.|++++-++...+..+..-.. +.-...-.|| ||||+...++|
T Consensus 697 k~R~Dl~~sIiqk~t~~~r~~~~~-~~v~tsrepT-ifsr~~~lsgs 741 (742)
T COG5173 697 KKRQDLTESIIQKKTLADRLKECF-TDVATSREPT-IFSRLLNLSGS 741 (742)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhc-cccccccCch-HHHHHHHhhcC
Confidence 999999999666555444432222 2211223566 99999988775
No 4
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.8e-48 Score=419.54 Aligned_cols=633 Identities=18% Similarity=0.243 Sum_probs=498.0
Q ss_pred HHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004393 12 EAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC 91 (756)
Q Consensus 12 ~~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (756)
-..+.+++++|+.+++|..|+.++++++-+..++|++|.+.|+.|-+....|-+.|.+|+..|.++...|.+|++.++.+
T Consensus 19 f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~T 98 (793)
T KOG2180|consen 19 FNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAEST 98 (793)
T ss_pred hhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhch-HHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhhhchHHHH
Q 004393 92 QTLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVG 170 (756)
Q Consensus 92 ~~~v~~~-~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~ 170 (756)
+.||+++ ++||+|+.|++||+++|++|+||+| |+.++.+|..|.+.|++--.. +....+.
T Consensus 99 e~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~M-----------------Lv~~vesL~~l~~kr~y~e~a--~~lqai~ 159 (793)
T KOG2180|consen 99 EAMVQEITRDIKQLDFAKKNLTTSITTLHRLHM-----------------LVTGVESLNALLSKRSYGEAA--SPLQAIL 159 (793)
T ss_pred HHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhhccHHHHH--hHHHHHH
Confidence 9999999 9999999999999999999999999 777777999998888853211 1112233
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhhhhhhhHHH---HHHHHHHccCcccccccCcccc
Q 004393 171 RLREYFEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQL---AEEAAEAEGGGVMAAISNPRRS 247 (756)
Q Consensus 171 ~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~~p~~lv~~~rIie~EE~~D~~~---~~~~~~~~~~~~~~~~~~~~~~ 247 (756)
.|.++|....++ -+|-+.-++.|.-- ...
T Consensus 160 ~ll~~F~~Yk~v-----------------------------~~I~~Ls~si~~~k~~l~~q------------------- 191 (793)
T KOG2180|consen 160 QLLNHFIAYKSV-----------------------------DEIANLSESIDKLKKSLLSQ------------------- 191 (793)
T ss_pred HHHHHHHHhcch-----------------------------HHHHHHHHHHHHHHHHHHHH-------------------
Confidence 444555553333 12222222222211 000
Q ss_pred cccccccccccCcchhhccccCCcchHHHH--HHHHHHHHHHHHHHHH---------HHhhhhhHHHHHHH----HHHHH
Q 004393 248 AKKSTTATISSNSHTQQKLKVQGKGYKDKC--YEQIRKAVERRFNKLL---------TELVFEDLKAALEE----ARTIG 312 (756)
Q Consensus 248 ~k~~~~~~~~~~~~~~~~~~~~pr~~k~~~--~~~l~~sv~~~~~~~~---------~~~~~~d~~~~L~~----~~~~~ 312 (756)
...+..++|++... -..+.......+.| +++++.+|++.+-+.+ ..|.+++-.+.||+ ++|++
T Consensus 192 i~~df~~~F~~~~~--~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfK 269 (793)
T KOG2180|consen 192 IFQDFKAAFSGGET--HEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFK 269 (793)
T ss_pred HHHHHHHhcCCCCC--CCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHH
Confidence 00111122222221 01122234567777 8889999988776542 23555444445554 57999
Q ss_pred HHHHHHHhhccccCCCcchHHHHHHHHHHHHHHHHHHHHhhc-cCCCChhhHHHHhchhHHHHHHHh-cCCC------C-
Q 004393 313 EELADIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDR-ANELTNIEILKVTGWVVEYQDNLI-GLGV------D- 383 (756)
Q Consensus 313 ~dL~~v~~~~~~~fP~~~~I~~~~~~~yh~~l~~~L~~l~~~-~~~l~~~~ll~ll~wv~~Y~~~l~-~l~i------~- 383 (756)
+-|...++...|.||++|++-.+.+..||+.+++.|..++.+ ..++++..++..|+-+.+|++.|. +|+. +
T Consensus 270 r~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~ 349 (793)
T KOG2180|consen 270 RLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPE 349 (793)
T ss_pred HHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc
Confidence 999999999999999999999999999999999999999852 468999999999999999999885 7731 1
Q ss_pred cc-cccc-------cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCC-CCCCccccCchhhHHHHHHHHHHH
Q 004393 384 ES-LAQV-------CSESGAMDPLMNSYVERMQATTKKWYLNILDADKVQ-PPKR-TEDGKLYTPAAVDLFRILGEQVQI 453 (756)
Q Consensus 384 ~~-~l~~-------ll~~~~~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~-~Pe~-d~dg~~~t~~~~dlfqmi~qql~~ 453 (756)
.. ...| ...+.++++.+..|++...+++.+.+.+++..++.. +|.. .+.+..++|++.|+|+.++.++-.
T Consensus 350 ~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~Ykkcltq 429 (793)
T KOG2180|consen 350 KNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVAYKKCLTQ 429 (793)
T ss_pred cccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHHHHHHHHH
Confidence 11 1000 011246789999999999999999999999988764 3422 345778999999999999999987
Q ss_pred HHhhCch-hHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CCC-------------C---CCchhhHHhccchH
Q 004393 454 VRENSTD-IMLYRIALAIIQVMIDFQAAERERLAE-----------PAP-------------E---IGLEPLCAMINNNL 505 (756)
Q Consensus 454 a~~~~~~-~~~~~v~~~~~~~l~~f~~~~~~~l~~-----------~~~-------------~---~~~~~lia~~N~~~ 505 (756)
+.+.+.. ..+.... ..+.+|++.|...+-. +.+ . ..+..+|++.|+.+
T Consensus 430 ~~~Ls~n~dpl~~~~----~~f~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e 505 (793)
T KOG2180|consen 430 CSELSENNDPLIALL----AVFSKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAE 505 (793)
T ss_pred HHHhccCCchHHHHH----HHHHHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 7765554 2222322 2667777777644310 000 0 12356899999999
Q ss_pred HhHHHHHHHHHHhhhhCCcchhhhcchHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccC----c--ch-h
Q 004393 506 RCYDLAMELSTSTMEALPPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSD----G--QV-T 578 (756)
Q Consensus 506 ~c~e~~~~l~~~~~~~v~~~~~~~i~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~----~--~~-v 578 (756)
+|.+++.++++++++.++..|.+.++++...+.|..+...+.+.+++.+.+. |.|.+..|....|.+ | ++ +
T Consensus 506 ~~~~tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~lv~D~e~a--~~~~lt~msk~~~~~l~~vgDQss~v 583 (793)
T KOG2180|consen 506 YCLATTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKISVSLQFLVQDLENA--LDPDLTPMSKMQWQNLEGVGDQSSYV 583 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHHHHh--hCcccChHHHHHHHHhcCccccchhh
Confidence 9999999999999999999999999999999999999999999999999998 899999999888975 3 24 8
Q ss_pred HHHHHhHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchh---
Q 004393 579 EYLTATFGDYFMDVKMFIE--ERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISIN--- 653 (756)
Q Consensus 579 ~~i~~ti~dy~~d~~~~L~--~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~--- 653 (756)
++++..+..+..+++.++. +.||..||..++..|+..++..+++|++ ....+++|+..|.+.++++|..+|+-.
T Consensus 584 ~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~~~l~R~k~-~s~~g~EQLlldt~slK~~ll~lp~~~s~~ 662 (793)
T KOG2180|consen 584 SSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFLNVLFRAKP-ISVVGAEQLLLDTESLKDALLTLPPLRSLF 662 (793)
T ss_pred HHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHHHHHHHhhh-HhhhHHHHHHHHHHHHHHHhhcCCchhhhc
Confidence 9999999999998887664 5689999999999999999999999998 589999999999999999999998722
Q ss_pred --------hhhhhhHhHHHHHHhh--ccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 004393 654 --------KVENRVRILTDLRELA--SANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVLQECKEIYE 723 (756)
Q Consensus 654 --------~v~~~~~~l~~l~~ll--~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l~~~~~~~~ 723 (756)
.+..-+.-++++++++ .+++++.|...|..|+ ||.+....+.||++|| ++|.+...++.-.+...+
T Consensus 663 n~~~~y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yikL~---~~~~~a~~~~vLelKg-v~r~d~~~~l~~~~~~~~ 738 (793)
T KOG2180|consen 663 NDKRPYKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIKLL---PDPDSAEWQKVLELKG-VKRDDALWKLLWFAYNLE 738 (793)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhc---CCCcHHHHHHHHHhcC-CcHHHHHHHHHHHHHhcc
Confidence 1334567788999987 5788899998888886 9999999999999998 999999999998886554
Q ss_pred h
Q 004393 724 N 724 (756)
Q Consensus 724 ~ 724 (756)
.
T Consensus 739 ~ 739 (793)
T KOG2180|consen 739 A 739 (793)
T ss_pred c
Confidence 3
No 5
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=99.97 E-value=6.1e-28 Score=261.51 Aligned_cols=345 Identities=19% Similarity=0.264 Sum_probs=259.1
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 004393 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (756)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (756)
+|+.+||++||+|++|+.|+.+..++..++..+|.+|+..|+.|......|-+.|.+|+..|++|..+|.+|+..+.+++
T Consensus 5 dpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 5 DPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred CHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhch-HHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHH
Q 004393 93 TLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGR 171 (756)
Q Consensus 93 ~~v~~~-~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~ 171 (756)
.+|.++ ++||+|+.||+||+.+|++|+||+| |..|+.+|..+-..|+|.- +.+....+..
T Consensus 85 ~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~M-----------------Lv~a~~qL~~~~~~r~Y~e--~a~~L~av~~ 145 (383)
T PF04100_consen 85 QMVQEITRDIKQLDNAKRNLTQSITTLKRLQM-----------------LVTAVEQLKELAKKRQYKE--IASLLQAVKE 145 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHcCCHHH--HHHHHHHHHH
Confidence 999999 9999999999999999999999999 8888899999988887542 2222334556
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhhhhhhhHHHHHHHHHHccCcccccccCcccccccc
Q 004393 172 LREYFEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAISNPRRSAKKS 251 (756)
Q Consensus 172 l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~~p~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 251 (756)
|..+|+++..+= .+. .|+. +|-..+.....++..+....=|++
T Consensus 146 L~~~F~~yksi~-~I~-~L~~--------------------~i~~l~~~L~~qI~~df~~~f~~~--------------- 188 (383)
T PF04100_consen 146 LLEHFKPYKSIP-QIA-ELSK--------------------RIDQLQNELKEQIFEDFEELFGSQ--------------- 188 (383)
T ss_pred HHHHHHcccCcH-HHH-HHHH--------------------HHHHHHHHHHHHHHHHHHHHhccC---------------
Confidence 667777643321 000 1111 111122222222221100000000
Q ss_pred cccccccCcchhhccccCCcchHHHH--HHHHHHHHHHHHHHHH---------HHhhhhh---HHHHHHH-HHHHHHHHH
Q 004393 252 TTATISSNSHTQQKLKVQGKGYKDKC--YEQIRKAVERRFNKLL---------TELVFED---LKAALEE-ARTIGEELA 316 (756)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~pr~~k~~~--~~~l~~sv~~~~~~~~---------~~~~~~d---~~~~L~~-~~~~~~dL~ 316 (756)
....+......+.+.| +|+|+.++++.+-..+ ..|..++ ++..+++ +.|+++-|.
T Consensus 189 ----------~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~ 258 (383)
T PF04100_consen 189 ----------GDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEYRRIFRENDEAASLDNIDRRYAWFKRLLK 258 (383)
T ss_pred ----------CcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcccccccchhhHHHHHHHHHHHHH
Confidence 0001111346788887 8999999888776532 3353333 3444444 679999999
Q ss_pred HHHhhccccCCCcchHHHHHHHHHHHHHHHHHHHHhh-ccCCCChhhHHHHhchhHHHHHHHh-cCC-CCcc--------
Q 004393 317 DIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSD-RANELTNIEILKVTGWVVEYQDNLI-GLG-VDES-------- 385 (756)
Q Consensus 317 ~v~~~~~~~fP~~~~I~~~~~~~yh~~l~~~L~~l~~-~~~~l~~~~ll~ll~wv~~Y~~~l~-~l~-i~~~-------- 385 (756)
.+++....+|||+|+|-...+..||..++++|..++. ...+++++.++..|+-+.+|++.|. +|+ ....
T Consensus 259 ~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~ 338 (383)
T PF04100_consen 259 NFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKK 338 (383)
T ss_pred HHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 9999999999999999999999999999999999985 3568999999999999999999885 772 2110
Q ss_pred cc----cc--cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 004393 386 LA----QV--CSESGAMDPLMNSYVERMQATTKKWYLNILDADK 423 (756)
Q Consensus 386 ~l----~~--ll~~~~~~~L~~~Y~~~~~~~l~ewl~~~l~~er 423 (756)
.. .+ -+-+.++++.+..|++...++|.+-+.+++..++
T Consensus 339 e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~ 382 (383)
T PF04100_consen 339 EMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEK 382 (383)
T ss_pred cccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 00 01 0123467788888888888888888888887653
No 6
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.1e-13 Score=152.18 Aligned_cols=302 Identities=14% Similarity=0.208 Sum_probs=224.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Q 004393 396 MDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMI 475 (756)
Q Consensus 396 ~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~ 475 (756)
+++++..|+.+..--|.+-+.+++..+.- +.-|++.|+...|+|.++++++.+|...+.-..+.++++.....+.
T Consensus 424 mQel~~~y~~LE~yfm~esv~kAi~ld~y-----e~~~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN~~~~~l~ 498 (773)
T KOG0412|consen 424 MQELIRNYLLLEEYFMLESVQKAIKLDEY-----EDAGQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFINEATALLD 498 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-----ccCCcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 45666777777777777777777755422 1258899999999999999999999865554444477766666554
Q ss_pred H-HHHHHHHHHc-----------------------CCCCCCCchhhHHhccchHHhHHHHHHHHHHhhhh----CCcch-
Q 004393 476 D-FQAAERERLA-----------------------EPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEA----LPPNY- 526 (756)
Q Consensus 476 ~-f~~~~~~~l~-----------------------~~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~~----v~~~~- 526 (756)
+ |..-.+..+. +..+....+.++..+||...|.+|...|.+-+.+. +++..
T Consensus 499 ndf~~~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~~~d~d~~~~~fl~~LNn~~ls~eyi~~L~~~le~~~~~vf~~~~d 578 (773)
T KOG0412|consen 499 NDFLVALQSKLRSIQGGAASALNIIQSSLQAGKAEDEDADLAKENFLTALNNADLSKEYIHTLKKTLESDCTEVFPQNFD 578 (773)
T ss_pred chHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhccCcchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 3 2221111111 10122345678888999999999998877655543 33333
Q ss_pred hhhc-----chHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhcccccc---------C-cch-hHHHHHhHHHHHH
Q 004393 527 AEQV-----NFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWS---------D-GQV-TEYLTATFGDYFM 590 (756)
Q Consensus 527 ~~~i-----~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~---------~-~~~-v~~i~~ti~dy~~ 590 (756)
..++ ++..+...|.++.+.++..|...++. |.++|++..+.+-..- + +++ |++.+..+++-+.
T Consensus 579 ~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lk-pRi~~~id~f~~is~~ls~edy~~~ea~d~~Vq~fl~~v~~l~~ 657 (773)
T KOG0412|consen 579 RAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLK-PRIRPWIDTFVNISYNLSEEDYAAYEANDPWVQQFLSSVEQLLA 657 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HhHhhhhhhhhhhhccccHHHHhhhccCChHHHHHHHHHHHHHH
Confidence 1111 57788899999999999999999986 4499999997655441 1 256 9999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhc
Q 004393 591 DVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELAS 670 (756)
Q Consensus 591 d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~ 670 (756)
.++..|+|..|++|..-+.+.++...-..++|+. ++.-|+-++.+|+..|..+|+....++ +...|..|..|+-+|+
T Consensus 658 ~~k~~ltp~nY~sLlsl~~~~ia~~LE~~i~k~~--FNrlG~lqLDre~r~lis~lt~~t~~~-lRdKf~RLtQIatLLn 734 (773)
T KOG0412|consen 658 ELKNSLTPENYDSLLSLIVDEIATQLEQIIWKIQ--FNRLGGLQLDRELRALISYLTGVTQWN-LRDKFARLTQIATLLN 734 (773)
T ss_pred hhhcccChhhHHHHHHHHHHHHHHHHHHHHHHhH--HHhhcchHhhHHHHHHHHHhhcccchh-HHHHHHHHHHHHHHHc
Confidence 9998899999999999888877766666666654 689999999999999999999887766 6778999999999999
Q ss_pred cCChhhHHHHHHHHHh--hCCCCCHHHHHHHHHhcCCCC
Q 004393 671 ANSVDAFALIYTNILE--HQPDCPPEVVERLVALRDGIP 707 (756)
Q Consensus 671 ~~~~~~~~~~~~~l~~--~~pD~s~~~v~~iL~~R~Dl~ 707 (756)
+++ ....++||+--+ .-|-+++..|.++|.+|-|+.
T Consensus 735 le~-~se~le~w~~~~g~~twrLt~~EVr~vl~lr~df~ 772 (773)
T KOG0412|consen 735 LEK-DSEILEYWGPNSGPLTWRLTPAEVRKVLALRIDFT 772 (773)
T ss_pred ccc-cchHHHhcCCCCCCceEEeCHHHHHHHHHhhccCC
Confidence 977 455668886542 115699999999999999874
No 7
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.29 E-value=2e-06 Score=102.44 Aligned_cols=607 Identities=13% Similarity=0.165 Sum_probs=344.8
Q ss_pred HHHHHHHhhcCC---CCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 13 AAVREVAKLLTL---PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQ----TGLESLALSEQMISQLRENFISIE 85 (756)
Q Consensus 13 ~a~~~v~~ll~~---p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~----~gl~~L~~a~~~v~~l~~~~~~i~ 85 (756)
++.+|||..|+. .+..+++++.-..+..|....-.+++..+......+- ..+..++.-+.++..+++.|..|.
T Consensus 11 D~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~ 90 (766)
T PF10191_consen 11 DVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQ 90 (766)
T ss_pred CHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999985 2236777777777777777777777777776666555 556667778888888999999988
Q ss_pred HHhHHhHH-hhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhhh
Q 004393 86 RYCQECQT-LIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAES 164 (756)
Q Consensus 86 ~~~~~~~~-~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~ 164 (756)
+.....+. ....+..+.+++.+|+++.++.+.|+.-..+.....+.++.+..+. +-.+..+|.++++.=. ..+.
T Consensus 91 ~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d-~~~~a~~l~~m~~sL~----~l~~ 165 (766)
T PF10191_consen 91 EEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGD-IAKIADRLAEMQRSLA----VLQD 165 (766)
T ss_pred HHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHH----HHcC
Confidence 87766544 3345588999999999999999999888888888888888888775 8888888888877433 1222
Q ss_pred chH--HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcC-CchhhhHHHHHhhhhhhhHHHHHHHHHHccCcccccc
Q 004393 165 HKE--EVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKES-PQTLVRALRVVEMQEILDQQLAEEAAEAEGGGVMAAI 241 (756)
Q Consensus 165 ~~~--~~~~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~~-p~~lv~~~rIie~EE~~D~~~~~~~~~~~~~~~~~~~ 241 (756)
.++ ++.. .++.+-+.|+..+.--+..++..-.-+ -..+|.++..|+|+....+.+...
T Consensus 166 ~pd~~~r~~------~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~------------- 226 (766)
T PF10191_consen 166 VPDYEERRQ------QLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKC------------- 226 (766)
T ss_pred CCchhHHHH------HHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------
Confidence 222 1111 122333333333333232222211111 134677777777776655554321
Q ss_pred cCcccccccccccccccCcchhhccccCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 004393 242 SNPRRSAKKSTTATISSNSHTQQKLKVQGKGYKDKCYEQIRKAVERRFNKLLTELVFEDLKAALEEARTIGEELADIYDY 321 (756)
Q Consensus 242 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~pr~~k~~~~~~l~~sv~~~~~~~~~~~~~~d~~~~L~~~~~~~~dL~~v~~~ 321 (756)
++...+..|.+.........|......| .++++..+. .=...
T Consensus 227 ---------------------------r~~~l~~~W~~~~~~~~~~~~~~~L~~f-yd~ll~~l~----------~E~~w 268 (766)
T PF10191_consen 227 ---------------------------RKAPLQRLWQEYCQSDQSQSFAEWLPSF-YDELLSLLH----------QELKW 268 (766)
T ss_pred ---------------------------HHHHHHHHHHHHhhhccchhHHHHHHHH-HHHHHHHHH----------HHHHH
Confidence 1123444443333333223333333333 122333332 22334
Q ss_pred ccccCCCcch-HHHHHHHHH---HHHHHHHHHHHhhc-cCCCChhhHHHHhchhHHHHHHHh----cCCCCcc--ccccc
Q 004393 322 VAPCFPPRYE-IFQLMVNLY---TERFIQMLRLLSDR-ANELTNIEILKVTGWVVEYQDNLI----GLGVDES--LAQVC 390 (756)
Q Consensus 322 ~~~~fP~~~~-I~~~~~~~y---h~~l~~~L~~l~~~-~~~l~~~~ll~ll~wv~~Y~~~l~----~l~i~~~--~l~~l 390 (756)
+..+||.++. +...++... .-.+..++...+.. ..+.....++.+.+-+.+|-..+. ....+.+ .+..+
T Consensus 269 ~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l 348 (766)
T PF10191_consen 269 CSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEEL 348 (766)
T ss_pred HHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHH
Confidence 5679999887 334444332 12233444444421 111124566666666666666543 2211111 01000
Q ss_pred ---CCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCC-CccccCchhhHHHHHHHHHHHHHhhCchhHHHHH
Q 004393 391 ---SESGAMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTED-GKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRI 466 (756)
Q Consensus 391 ---l~~~~~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~~Pe~d~d-g~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v 466 (756)
+. +....+...|-...+..+..-+..+--.. ++. .| -.....+...+|.+.++.+++|...+.|.....+
T Consensus 349 ~~al~-~PF~~~q~~Yg~lE~~~L~~~L~~l~~~~----~~~-~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~L 422 (766)
T PF10191_consen 349 LQALF-EPFKPYQQRYGELERRFLSAQLSALDLES----AEL-SDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGL 422 (766)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcccCC----CcH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 00 12345556666666665555554332111 000 00 0223446678899999999999988877665455
Q ss_pred HHHHHHHHHHHHHHHHHHHc-------CCC-C-------C-CCchhhHHhccchHHhHHHHHHHHHHhhhh-------C-
Q 004393 467 ALAIIQVMIDFQAAERERLA-------EPA-P-------E-IGLEPLCAMINNNLRCYDLAMELSTSTMEA-------L- 522 (756)
Q Consensus 467 ~~~~~~~l~~f~~~~~~~l~-------~~~-~-------~-~~~~~lia~~N~~~~c~e~~~~l~~~~~~~-------v- 522 (756)
+..+-..+..|...|...+. .+. + + ..+...+.++..|-.+......++.++... +
T Consensus 423 l~Ald~~~~~y~~~~~~~l~~lr~~~~~~~~~~~~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~ 502 (766)
T PF10191_consen 423 LKALDSIFSQYLSSLTATLRSLRKSCGLDSTATSSASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLL 502 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55555566666665554431 110 0 1 012333444444332222232322222111 1
Q ss_pred ------------------Ccchh---------h-----------------------h-cchHHHhhhHHHHHHHHHHHHH
Q 004393 523 ------------------PPNYA---------E-----------------------Q-VNFEDACKGFLEVTKEAVRHTL 551 (756)
Q Consensus 523 ------------------~~~~~---------~-----------------------~-i~~~~~~~~f~~l~~~~~~~L~ 551 (756)
..... . . .-+......+..+.+.|.....
T Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~ 582 (766)
T PF10191_consen 503 SSSFSSSSDTGEAASGDTRSSSPNPWKGYNYLAASRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVF 582 (766)
T ss_pred ccccCCccccccccccccCcccccchHHHHhhccccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHH
Confidence 00000 0 0 0123334556667777888888
Q ss_pred HHHhcCCCchHHHhhhcc-ccccC---c-----c-h-----hHHHHHhHHHHHHHHHHHhhh------------------
Q 004393 552 NVIFEDPGVEQLLVKLYQ-KEWSD---G-----Q-V-----TEYLTATFGDYFMDVKMFIEE------------------ 598 (756)
Q Consensus 552 ~~i~~d~~l~p~~~~lft-~~W~~---~-----~-~-----v~~i~~ti~dy~~d~~~~L~~------------------ 598 (756)
+.+|.- ++.++..+.+ +.|-. + + | -..-+..|.+|+-.+=.||.|
T Consensus 583 d~l~~~--i~~~L~~vp~~~~W~~~~~~~~~~~~LP~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~ 660 (766)
T PF10191_consen 583 DVLFSP--IRQQLKSVPSLPSWSSAGVGETSTLDLPSFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKL 660 (766)
T ss_pred HHHHHH--HHHHHhcCCcCcccccCCccccccCCCCccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCC
Confidence 888885 8899999976 46866 1 1 1 123345556666444334442
Q ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHH
Q 004393 599 --------------RSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTD 664 (756)
Q Consensus 599 --------------~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~ 664 (756)
.+-...+..+...+...|+..+++=+. .++.++.|+.-|+.-|.+.+..++-. .-..|..
T Consensus 661 ~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i~~i~~-l~~~~~~QL~~Di~Yl~nVl~aLg~~-----~~~~L~~ 734 (766)
T PF10191_consen 661 PYPPESDEEAEEADDFADEWLGKVARATCALYLEQILEIPE-LSESGAKQLATDIDYLSNVLSALGLS-----PPPNLQQ 734 (766)
T ss_pred CCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHHHHHHHhCCC-----CCHHHHH
Confidence 223456667777788889999887543 48999999999999999999998642 2256677
Q ss_pred HHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004393 665 LRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALR 703 (756)
Q Consensus 665 l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R 703 (756)
+..+++. +++.+... .+ .++...+.+|=.||
T Consensus 735 ~~~ll~~-~~~~~~~~----~~---~~~~~~~~~v~~mr 765 (766)
T PF10191_consen 735 LVTLLKA-PPDQYAQV----AK---GLPRRLVAAVAKMR 765 (766)
T ss_pred HHHHHcC-CHHHHHHH----Hh---cCCHHHHHHHHHHh
Confidence 7888875 44555543 33 55677888887777
No 8
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=98.79 E-value=0.00055 Score=81.94 Aligned_cols=389 Identities=14% Similarity=0.168 Sum_probs=224.1
Q ss_pred HHHHHHHHHhhccccCCCcchHHHHHHH-HHHHHHHHHHHHHhhccCCCChhhHHHHhchh----HHHHHHHhcCC----
Q 004393 311 IGEELADIYDYVAPCFPPRYEIFQLMVN-LYTERFIQMLRLLSDRANELTNIEILKVTGWV----VEYQDNLIGLG---- 381 (756)
Q Consensus 311 ~~~dL~~v~~~~~~~fP~~~~I~~~~~~-~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv----~~Y~~~l~~l~---- 381 (756)
+...+..-...+..+||+...|...|+. .|++.+..++..+++...+.+....+..+.-+ ..+-..|...+
T Consensus 200 i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i~~lL~~a~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~ 279 (710)
T PF07393_consen 200 IRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYIESLLEEASSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGEN 279 (710)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 3333333334456799999999999996 99999999999998643344555555554433 22223333331
Q ss_pred CCcc-cccccC---CCCchhhHH--HHHHHHHHHHHHHHHHHHHhhc-----c---------------------------
Q 004393 382 VDES-LAQVCS---ESGAMDPLM--NSYVERMQATTKKWYLNILDAD-----K--------------------------- 423 (756)
Q Consensus 382 i~~~-~l~~ll---~~~~~~~L~--~~Y~~~~~~~l~ewl~~~l~~e-----r--------------------------- 423 (756)
++.+ ..+..+ ......+.+ +.|+......+++-+...+..- +
T Consensus 280 ~~~~~~~~~~l~~~~~~lF~~~l~~~~Yl~~E~~~l~~~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~ 359 (710)
T PF07393_consen 280 PDPDSSDSAFLDQLVESLFEPYLEDDEYLEEEKRSLKELLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSS 359 (710)
T ss_pred CCccchHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhcccc
Confidence 1111 111111 112234455 6666666555555444333220 0
Q ss_pred ---------------c------------------------CCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHH
Q 004393 424 ---------------V------------------------QPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLY 464 (756)
Q Consensus 424 ---------------~------------------------~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~ 464 (756)
. ..+..+.+|.+-...+..+.+-..+.+.+|...+.+....
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~ 439 (710)
T PF07393_consen 360 SSSSSKLSQISSFMSSKLDRSQQQASLENNLDLAAKANIMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLP 439 (710)
T ss_pred ccccchhHHHhhhhhcccCcccccccccchhhhhccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchh
Confidence 0 0012234556777778888888889999998777433332
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHc--------CC---CCC-CCchhhHHhccchHHhHHHHH-HHHHHhhhhCCc--chh
Q 004393 465 RIALAIIQVMIDFQ-AAERE-RLA--------EP---APE-IGLEPLCAMINNNLRCYDLAM-ELSTSTMEALPP--NYA 527 (756)
Q Consensus 465 ~v~~~~~~~l~~f~-~~~~~-~l~--------~~---~~~-~~~~~lia~~N~~~~c~e~~~-~l~~~~~~~v~~--~~~ 527 (756)
..+..+...|...+ ..|-+ .++ .+ ... ..+. ...++|.+..-..... .+.+.+.+.+.. .+.
T Consensus 440 ~~~~~if~~Ll~~l~~~~i~~~lea~~~~~~~~~~~~~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~~~~~~~~ 518 (710)
T PF07393_consen 440 KNCQEIFEILLQSLGEEHIEPALEAAYYKLSSQDIAESKEVPPLV-FLELINQADTILQLLQIFYKEELLPLIQSSPDFL 518 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 33333333333322 22211 111 11 111 2344 5556666543323232 233344444422 222
Q ss_pred hhcchHHHhhhHH----HHHHHHHHHHHHHHhcCCCchHHHhhhccccccC---------c--chhHHHHHhHHHHHHHH
Q 004393 528 EQVNFEDACKGFL----EVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSD---------G--QVTEYLTATFGDYFMDV 592 (756)
Q Consensus 528 ~~i~~~~~~~~f~----~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~---------~--~~v~~i~~ti~dy~~d~ 592 (756)
.. .....+.|. .-...+.+..++.+... ++..+..-....... . .+...+|..++..+.-+
T Consensus 519 ~~--~~~~k~~~~~~le~~v~~gL~~~i~~l~~~--v~~iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~ 594 (710)
T PF07393_consen 519 NE--CIQKKKSFESRLEEKVNAGLNKGIDVLMNW--VEFILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLL 594 (710)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHH
Confidence 11 111122222 22223333333333333 344443222222221 1 13677888888888888
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccC
Q 004393 593 KMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASAN 672 (756)
Q Consensus 593 ~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~ 672 (756)
+..+.....+.|+.++..++....++.+.+.+ ++..||-++..|+....+++..+... .+...|..|..++.|+..
T Consensus 595 ~~~l~~~nl~~f~~elg~~l~~~l~~h~kk~~--vs~~Gg~~l~~Dl~~Y~~~~~~~~~~-~v~~~F~~L~~l~nl~~v- 670 (710)
T PF07393_consen 595 KGSLDGSNLDVFLQELGERLHRLLLKHLKKFT--VSSTGGLQLIKDLNEYQDFIRSWGIP-SVDEKFEALKELGNLFIV- 670 (710)
T ss_pred HHHccchhHHHHHHHHHHHHHHHHHHHHHhCc--cCchhHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHhheee-
Confidence 88888889999999999999999999885544 57899999999999999999998654 367899999999999887
Q ss_pred ChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHh
Q 004393 673 SVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKD 710 (756)
Q Consensus 673 ~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~ 710 (756)
+|+.+..-++.... +.++++.+...+.+|.|+++..
T Consensus 671 ~~~~l~~~~~~~~~--~~~~~~~i~~fi~~R~D~~~~~ 706 (710)
T PF07393_consen 671 DPENLKELCREGQL--GRFSPEEIYEFIQRRSDWKSIK 706 (710)
T ss_pred cHHHHHHHHhhccc--cCCCHHHHHHHHHHhhhhhhcc
Confidence 66777654443322 7789999999999999987543
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.0016 Score=74.50 Aligned_cols=640 Identities=12% Similarity=0.095 Sum_probs=329.5
Q ss_pred hHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh-HHhhhchHHHHHHHHHH
Q 004393 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC-QTLIENHDQIKLLSNAR 108 (756)
Q Consensus 30 kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~-~~~v~~~~~Ik~l~~~~ 108 (756)
+.+++..++.....+-+.+|-.....|.++--.++..|..-+.++++|+..+.+.+...+++ .+++-..+++.+.....
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566677788888888998888889999999999999999999999888876 56667779999999999
Q ss_pred HHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHhhcHHHHHHHHHH
Q 004393 109 NNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEK 188 (756)
Q Consensus 109 ~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~l~~~F~~v~~l~~~f~~ 188 (756)
+|++.++..++.=..+-+.+.+.++.+..++ ..+|.+.+..||.- -|....+. .-...+. .++..+-+...+
T Consensus 125 rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kq-yy~aLktle~lE~~---yL~~~~~~-~~~~~i~---~~Ip~ik~~i~~ 196 (800)
T KOG2176|consen 125 RNITEAIELLTLCLPVLELYSKLQEQMSEKQ-YYPALKTLESLEKV---YLPRVSNF-RFLIVIQ---NRIPFIKEVIKS 196 (800)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH---HHHhcccc-hhhHHHh---hcchHHHHHHHH
Confidence 9999999999999998899999999999887 77888888777762 22222100 0000111 111111111111
Q ss_pred HHHHHHHHHHHHhhcC-CchhhhHHHHHhhhhhhhH-------HHHHH------H-----HHHccCcccccccCcccccc
Q 004393 189 TLWGYISNFYKLSKES-PQTLVRALRVVEMQEILDQ-------QLAEE------A-----AEAEGGGVMAAISNPRRSAK 249 (756)
Q Consensus 189 ~l~~~~~~~l~~~~~~-p~~lv~~~rIie~EE~~D~-------~~~~~------~-----~~~~~~~~~~~~~~~~~~~k 249 (756)
....-+++.+.-.|+. |.+=..|+...+.--+.+. .-..+ + .+.++++.... .
T Consensus 197 ~~~~~~~e~L~~irk~s~~iGq~ai~~~~~ar~r~~~~~~~~~~~~e~~~~~~l~~l~~~~~~e~d~~~~s-------~- 268 (800)
T KOG2176|consen 197 KSMSDFREWLENIRKKSPKIGQTAIQQAKEARQRWEEEKFNKQIEAEEQSTGSLAKLAYGLEFEEDDEHDS-------I- 268 (800)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhccchHHHhhhhhHHHHhccccccccccccc-------c-
Confidence 1111111112111111 1111222222220000000 00000 0 00000000000 0
Q ss_pred cccccccc-cCcch--hhcc------ccCCcchHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHH--H
Q 004393 250 KSTTATIS-SNSHT--QQKL------KVQGKGYKDKCYEQIRKAVERRFNKLLTE-LVFEDLKAALEEARTIGEELA--D 317 (756)
Q Consensus 250 ~~~~~~~~-~~~~~--~~~~------~~~pr~~k~~~~~~l~~sv~~~~~~~~~~-~~~~d~~~~L~~~~~~~~dL~--~ 317 (756)
....+... +.++. .+.| --.+.+|+++|...-+..-..+.....+. +...+-+..+.. |+..+.. .
T Consensus 269 ~~~~~~~~~~~~~~~~d~~plyr~~hi~~~Lg~~~~f~~~y~~nr~~q~~~~~q~~~t~~~~l~~~~t--y~~~i~Gffi 346 (800)
T KOG2176|consen 269 MIFQDLNELSGAIDKFDFEPLYRCLHIHSVLGLRERFRAYYQMNRRLQADLVLQPPFTQLDSLEGYQT--YFNQIAGFFI 346 (800)
T ss_pred hhccCcccccchheeecccHHHHHHHHHHHHhhHHHHHHHHHHhHHHhhhcccCCCcchhhHHHHHHH--HHHHHhhHHH
Confidence 00000000 00000 0011 01233444444333332222111111100 101111222222 4443333 4
Q ss_pred HHhhccccCCC--cchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhHHHHHHHhcCCCCcccccccCCCCc
Q 004393 318 IYDYVAPCFPP--RYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVDESLAQVCSESGA 395 (756)
Q Consensus 318 v~~~~~~~fP~--~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l~~l~i~~~~l~~ll~~~~ 395 (756)
|++++..|-|- .|+=.+..-..-...+.+.|.... ...-+++.++.+=+++.-|-..|+.+|.+++.+- +.
T Consensus 347 ved~il~t~~~~~s~~~ve~lW~~~i~k~v~~L~~~~--s~~~t~~~ll~lKd~i~L~~~tl~~yg~~V~~l~-----~~ 419 (800)
T KOG2176|consen 347 VEDHILRTTGGFLSYNEVEELWDTAISKLVATLSYQS--SRCQTPNHLLKLKDLIVLLGATLENYGFNVEPLY-----DL 419 (800)
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHH--HhcCChhHHHHHHhHHHHHHHHHHHcCCchhHHH-----HH
Confidence 55555555552 121112222222333334444433 2345788999999988888889999998885432 24
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccc------------------------CCCCCCCCCccccCchhhHHHHHHHHH
Q 004393 396 MDPLMNSYVERMQATTKKWYLNILDADKV------------------------QPPKRTEDGKLYTPAAVDLFRILGEQV 451 (756)
Q Consensus 396 ~~~L~~~Y~~~~~~~l~ewl~~~l~~er~------------------------~~Pe~d~dg~~~t~~~~dlfqmi~qql 451 (756)
...+.+.|.+..-.+-.+-+..+++.+.- .+|-..+.-..+|+..-+++..+++.+
T Consensus 420 l~~~rdky~e~LL~~~~~~f~e~l~~D~f~pm~V~~e~~Ye~~v~~fp~~~~e~~~~~Fp~~~pFS~mvP~~c~~~k~fi 499 (800)
T KOG2176|consen 420 LVEIRDKYHEVLLRKWRKIFREALEKDDFMPMVVKKEEEYEKNVLSFPFQNEELEPLPFPKTFPFSPMVPDVCTQAKKFI 499 (800)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhhhcccccccccHHHHhhhhhccccccccccCCCCcccCCCCcCCchHHHHHHHHH
Confidence 56788999999988888888899887721 122223445677888888888888887
Q ss_pred HHHHhhCchhHH--HHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCchhhHHhccchHHhHHHHHHHHHHhhhh--CCcch
Q 004393 452 QIVRENSTDIML--YRIALAIIQ-VMIDFQAAERERLAEPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEA--LPPNY 526 (756)
Q Consensus 452 ~~a~~~~~~~~~--~~v~~~~~~-~l~~f~~~~~~~l~~~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~~--v~~~~ 526 (756)
..+-.-...... ..++..... .+..-....-..+....+..++..++=++=|-.++..-+..+.+..... ++...
T Consensus 500 ~~~v~fls~~~l~~~e~~~~~~~~~~l~l~rs~vl~~~~~~~~~~lsq~~QI~~n~~~fe~a~~~f~~~a~~~~~~~~~~ 579 (800)
T KOG2176|consen 500 YACVKFLSDLVLLETEVLNKIRKDTNLLLTRSLVLSLTSSLPSLNLSQAMQIAANLDYFEIAADFFLEFACHLNGIPNRD 579 (800)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHccCCcccc
Confidence 554321111111 011111111 1100111111111112233344444444444444433333333322211 11111
Q ss_pred hhhcchHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCc------ch-hHHHHHhHHHHHHHHHHHhhhh
Q 004393 527 AEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDG------QV-TEYLTATFGDYFMDVKMFIEER 599 (756)
Q Consensus 527 ~~~i~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~------~~-v~~i~~ti~dy~~d~~~~L~~~ 599 (756)
.+.. +. .-.|..-.+.|-..+...+-.. .+..+. +..-.|.+. +. +..++.-++-.+.....+|-..
T Consensus 580 ~e~~--~~-s~~l~~sr~~Ae~~l~~~i~~K--id~f~~-l~~~dW~t~e~pq~~~~~i~e~~~yLet~~~s~~q~LP~~ 653 (800)
T KOG2176|consen 580 AERP--SS-STKLLASRKLAETELIELIKLK--IDDFLE-LIEYDWTTTEVPQGPSEYINEMLIYLETMFSSALQILPYK 653 (800)
T ss_pred cccc--cc-chhhhhhhhhHHHHHHHHHhhh--hHHHHH-HhhccccccccCCCccHHHHHHHHHHHHHHHHHHhhCcHH
Confidence 1110 00 1122222222333333333222 222222 224578762 12 4444444444444444467667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc-ccHHHHHHHHhHHHHHHHHHHcc---cchhh-hhhhhHhHHHHHHhhccCCh
Q 004393 600 SFRRFVEACLEETIVIYIDHLLTQKNY-IRELTIERLRVDEEVITDFFREY---ISINK-VENRVRILTDLRELASANSV 674 (756)
Q Consensus 600 ~~~~l~~~l~~~~v~~Yi~~l~~~k~~-~~~~~a~~i~~D~~~l~~~F~~l---~s~~~-v~~~~~~l~~l~~ll~~~~~ 674 (756)
..+.+|....+++....+.-+.-...+ ++-.++.++..|+..+..|-..= +..+. ....|--+..+++++..+++
T Consensus 654 v~~~v~~~~~~his~~iv~llldd~ik~is~~Ai~~fnlDv~~lEsfa~~~p~~~~~~~~~~~~fielrQlinLL~~~~~ 733 (800)
T KOG2176|consen 654 VAQLVCLRELDHISTSIVGLLLDDSIKQISMGAITNFNLDVNYLESFAASPPVPPNQEGVLAKAFIELRQLINLLLLSDW 733 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHccchhHHHHHHhccCCCCCCcccchhHHHHHHHHHHHHHHHhcCH
Confidence 788899999999999988888776543 36789999999999999888772 21221 23455567789999988898
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHH
Q 004393 675 DAFALIYTNILEHQPDCPPEVVERLVA 701 (756)
Q Consensus 675 ~~~~~~~~~l~~~~pD~s~~~v~~iL~ 701 (756)
+.+...|..... |.-+.+..+..+|.
T Consensus 734 e~y~~~~~r~rs-Y~rl~~~~a~t~lE 759 (800)
T KOG2176|consen 734 ETYLNDYGRERS-YNRLQPAKAATLLE 759 (800)
T ss_pred HHhhCchhhhhh-hhccCHHHHHHHHH
Confidence 888777776655 76666666666655
No 10
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=98.64 E-value=5.9e-06 Score=94.39 Aligned_cols=385 Identities=11% Similarity=0.126 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHH----HhhhhhHHHHHHH-HHHHHHHHHHHHhhccccCCC----cchHHHHHHHHHHHHHHHHH
Q 004393 278 YEQIRKAVERRFNKLLT----ELVFEDLKAALEE-ARTIGEELADIYDYVAPCFPP----RYEIFQLMVNLYTERFIQML 348 (756)
Q Consensus 278 ~~~l~~sv~~~~~~~~~----~~~~~d~~~~L~~-~~~~~~dL~~v~~~~~~~fP~----~~~I~~~~~~~yh~~l~~~L 348 (756)
++++-..+..||.=.+. ....+-+-=.+.. .+|+.+....+...+.|++-+ ++++...|+..--..+++.+
T Consensus 3 ~~~l~~p~~~rF~yHF~~~r~Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl 82 (494)
T PF04437_consen 3 IDVLVNPFKKRFRYHFMGNRPTNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKL 82 (494)
T ss_dssp HHHHCHHHHHHHHHHT----S---CCCHHHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHH
Confidence 56666777777753321 1111101112222 236666655566666777766 46666666666656666666
Q ss_pred HHHhhccCCCChhhHHHHhchhHHHHHHHh-cCCCCcccccccCCCCc--hhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 004393 349 RLLSDRANELTNIEILKVTGWVVEYQDNLI-GLGVDESLAQVCSESGA--MDPLMNSYVERMQATTKKWYLNILDADKVQ 425 (756)
Q Consensus 349 ~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l~-~l~i~~~~l~~ll~~~~--~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~ 425 (756)
...+. ...-+...+..++.=+..|.+.|. .++-+.++.+. .... -+...+.+++..++.-.+=++.++..+..=
T Consensus 83 ~~~l~-~~~~~~~~l~HlI~e~~~FD~~L~~~~~y~~d~~~~--~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw 159 (494)
T PF04437_consen 83 RSDLP-ELLDDPSLLSHLIDEILSFDKELRSLYGYPGDWQGS--TLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAW 159 (494)
T ss_dssp HHHH---TTS-HHHHHHHHHHHHHHHHHHHHTS---S--------CGGGS-HHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHH-hhccChhHHHHHHHHHHHHHHHHHHHcCCCCccchh--HHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhh
Confidence 55441 112345566667777777888886 44443321111 0112 246667777777776666666666554211
Q ss_pred CCC-----CCCCCccccCchhhHHHHHHHHHHHHHh---hCchhHHHHHHHHHHHHHHHHHHHHHHHHc----------C
Q 004393 426 PPK-----RTEDGKLYTPAAVDLFRILGEQVQIVRE---NSTDIMLYRIALAIIQVMIDFQAAERERLA----------E 487 (756)
Q Consensus 426 ~Pe-----~d~dg~~~t~~~~dlfqmi~qql~~a~~---~~~~~~~~~v~~~~~~~l~~f~~~~~~~l~----------~ 487 (756)
.++ .+.+..-.|.++..+..+++.-.+.... .+....+. ...-+..+..|..+....++ .
T Consensus 160 ~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl--~~iql~lld~~~~~L~~~~~~~~~~~s~~~~ 237 (494)
T PF04437_consen 160 QIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFL--IDIQLPLLDDYHDRLSQSLEAFESSTSTLAS 237 (494)
T ss_dssp ------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--G--HHHHHHHHHHTHHHHHHHHHHHHHT----SC
T ss_pred hhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Confidence 111 2445566788888888888777766653 33322221 12223344444443333221 1
Q ss_pred CCCCCCchhhHHhccchHHhHHHHHHHHHHhh-------hhCCc-----chhh------hcchHHHhhhHHHHHHHHHHH
Q 004393 488 PAPEIGLEPLCAMINNNLRCYDLAMELSTSTM-------EALPP-----NYAE------QVNFEDACKGFLEVTKEAVRH 549 (756)
Q Consensus 488 ~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~-------~~v~~-----~~~~------~i~~~~~~~~f~~l~~~~~~~ 549 (756)
.....+++.+|.+.|++.++.....+..+.+. +.-+. .... ..=|+++...|..+.+.+...
T Consensus 238 ~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~ 317 (494)
T PF04437_consen 238 LSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLES 317 (494)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 11224579999999999998877765433111 00000 0000 012678888999999999999
Q ss_pred HHHHHhcCCCchHHHhhhcc-ccccCc-----------ch-hHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 004393 550 TLNVIFEDPGVEQLLVKLYQ-KEWSDG-----------QV-TEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIY 616 (756)
Q Consensus 550 L~~~i~~d~~l~p~~~~lft-~~W~~~-----------~~-v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Y 616 (756)
+++.+..+ ++..++..++ .+|... ++ ....+..+..++..++..|.+..|..+...++..+...+
T Consensus 318 iv~~v~~~--~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l 395 (494)
T PF04437_consen 318 IVDRVVKE--FKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYL 395 (494)
T ss_dssp HHHHHHHH--HHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 99999988 8999999998 889641 12 455667788899999888899999999999999888888
Q ss_pred HHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccC
Q 004393 617 IDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASAN 672 (756)
Q Consensus 617 i~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~ 672 (756)
+..++... .++..||.|+..|.+.|...|..+.... ...++.+.....+|++.
T Consensus 396 ~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~p--~~~f~~l~E~~~LL~L~ 448 (494)
T PF04437_consen 396 WESILMSN-KFSRAGAAQLQFDMRALFSVFSQYTPRP--EAFFKRLREACKLLNLP 448 (494)
T ss_dssp HHTTTTTS--B-HHHHHHHHHHHHHHHTTS--TTSGG---HHHHHHHHHHHHHGGG
T ss_pred HHHhhhcC-eeChhHHHHHHHHHHHHHHHHHhhccCH--HHHHHHHHHHHHHcCCC
Confidence 88887766 4799999999999999999999976544 35677777777787764
No 11
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=97.96 E-value=0.081 Score=62.12 Aligned_cols=111 Identities=15% Similarity=0.235 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhHHHHHHHhcC-CCCcccccccCCCCchhhHHHHHHHHHHH
Q 004393 331 EIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGL-GVDESLAQVCSESGAMDPLMNSYVERMQA 409 (756)
Q Consensus 331 ~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l~~l-~i~~~~l~~ll~~~~~~~L~~~Y~~~~~~ 409 (756)
++.+.....-++-+..++.+++ ..+.++..++.+.+=+.-|..++.++ |.+.. + ...+.+|.+.-.+.+..
T Consensus 303 ~lld~i~~~l~rplk~RvEQvi--~se~~~i~~yki~~LL~fY~~~~~k~i~~~s~-L-----~~tl~~L~~~a~~~f~~ 374 (618)
T PF06419_consen 303 ELLDRILEGLCRPLKIRVEQVI--SSEEDPITLYKIANLLSFYQMTFSKLIGEDSS-L-----IETLKELQDLAQKKFFS 374 (618)
T ss_pred HHHHHHHHHHhHHHHHHHHHHH--HcCCCccHHHHHHHHHHHHHHHHHHHcCCCch-H-----HHHHHHHHHHHHHHHHH
Confidence 3445555666777888888888 45677888888887765566677654 43331 1 14677888888888888
Q ss_pred HHHHHHHHHHhhcccCCCCCCCCCccccCchhhHHHHHHHHHHH
Q 004393 410 TTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQI 453 (756)
Q Consensus 410 ~l~ewl~~~l~~er~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~ 453 (756)
.++.++.++..... .+|..| ....+.-.+....+.+-+++
T Consensus 375 ~l~~~~~~l~~~~~-~~~~~D---L~PP~~l~d~l~~L~~il~~ 414 (618)
T PF06419_consen 375 SLRDHVAKLLRSAP-EPPPAD---LSPPEWLIDFLSLLREILDV 414 (618)
T ss_pred HHHHHHHHHHhhCC-CCCCCC---CCCCHHHHHHHHHHHHHHHH
Confidence 88888888886622 223332 44556667777777777766
No 12
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.90 E-value=0.1 Score=61.23 Aligned_cols=125 Identities=11% Similarity=0.125 Sum_probs=89.2
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch----HHHH
Q 004393 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH----DQIK 102 (756)
Q Consensus 27 ~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~----~~Ik 102 (756)
+-+.+.....++.+++..+.+++.+.+++........+....+....+..+..++.++-....+.+ ...++ .++.
T Consensus 8 ~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~-i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 8 SKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENE-IQPQLRDAAEELQ 86 (593)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHH
Confidence 445688888889999999999999999999998887777777777777777777766554422221 11222 3333
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHh
Q 004393 103 LLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (756)
Q Consensus 103 ~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~ 153 (756)
.+..-.+....++..+++|..+.+..+..+..+.++. ++.|-..|.+++.
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~-~~~Aa~~L~~~~~ 136 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGN-YLDAADLLEELKS 136 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 3444444444566778888888888888877887776 8888888888876
No 13
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=97.81 E-value=0.0017 Score=75.43 Aligned_cols=209 Identities=12% Similarity=0.180 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHH-HHHHHHHHHHhhccccCCCcch-HHHHHHHHHHHHHHHHH
Q 004393 274 KDKCYEQIRKAVERRFNKLLTELV---FEDLKAALEEAR-TIGEELADIYDYVAPCFPPRYE-IFQLMVNLYTERFIQML 348 (756)
Q Consensus 274 k~~~~~~l~~sv~~~~~~~~~~~~---~~d~~~~L~~~~-~~~~dL~~v~~~~~~~fP~~~~-I~~~~~~~yh~~l~~~L 348 (756)
++++-..|+.|++..|........ ..++...|-.++ .+..-...-.+...|.+..... ....-+...|.+..+.|
T Consensus 382 ~~~ie~YIrsSi~~Af~~~~~~~~~~~~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~LH~~Yg~~L 461 (677)
T PF05664_consen 382 RSRIESYIRSSIKAAFARMASSVDSRSDSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAATLHSCYGNEL 461 (677)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHHHHHHHHHHH
Confidence 445556677788887765432211 112222333321 3333333444556777755333 34444568999999999
Q ss_pred HHHhhccCCCChhhHHHHhchhHHHHHHHhcC-------CCCc--ccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 004393 349 RLLSDRANELTNIEILKVTGWVVEYQDNLIGL-------GVDE--SLAQVCSESGAMDPLMNSYVERMQATTKKWYLNIL 419 (756)
Q Consensus 349 ~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l~~l-------~i~~--~~l~~ll~~~~~~~L~~~Y~~~~~~~l~ewl~~~l 419 (756)
+.++.+...|+ .+.+.+|.=..+.++.|..+ |.+. ..+.|.--+..+..++..+++...+++.+|+++++
T Consensus 462 k~~L~~~~~LT-~d~v~VL~aA~~LEk~Lvq~~~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~~~l~ewv~ra~ 540 (677)
T PF05664_consen 462 KQFLSGVTHLT-PDVVEVLQAADKLEKALVQMVSVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQLERLNEWVDRAI 540 (677)
T ss_pred HHHHcccccCC-HHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986433444 35557776666677754311 1111 01223222345678888999999999999999999
Q ss_pred hhcccCCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 004393 420 DADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMIDFQAAERERLAE 487 (756)
Q Consensus 420 ~~er~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~~f~~~~~~~l~~ 487 (756)
++|..+| .. +...++++.+|||.|++|.++.-..+.-+... .++......+...++.|-..+..
T Consensus 541 ~qE~W~P-~S--~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~-~~l~~L~~gld~~lq~Y~~~v~~ 604 (677)
T PF05664_consen 541 KQEKWNP-RS--KEERHSPSVVEVFRIFNETVDQFFQLPWPMHA-DFLQALSKGLDKALQRYCEKVEQ 604 (677)
T ss_pred hhccCCc-CC--CCCCCcchHHHHHHHHHHHHHHHHcCCCCCch-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998853 32 34668999999999999999988765544333 55677777777777778776643
No 14
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=96.96 E-value=0.12 Score=52.81 Aligned_cols=197 Identities=10% Similarity=0.136 Sum_probs=132.0
Q ss_pred HHHHHHhhhhCCcchhhhcc--hHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCc------ch-hHHHH
Q 004393 512 MELSTSTMEALPPNYAEQVN--FEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDG------QV-TEYLT 582 (756)
Q Consensus 512 ~~l~~~~~~~v~~~~~~~i~--~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~------~~-v~~i~ 582 (756)
+.+...+.+.+|+...+.++ ++.+.+...++...++...+..+++ ++.....+...+|--. ++ |+.++
T Consensus 22 ~~~~p~l~~lLp~~~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l~---~~~i~~~Ia~vKWdvkev~~qhs~YVd~l~ 98 (234)
T PF10474_consen 22 ESLRPYLESLLPPNKRDFLEQFYSQTVSAVPDLREPIYKCVASRLLD---LEQILNSIANVKWDVKEVMSQHSSYVDQLV 98 (234)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---HHHHHHHHHHcCCCCCCCCCccCHHHHHHH
Confidence 33444445555555443221 3445566677888888888888874 7888889999999532 35 88888
Q ss_pred HhHHHHHHHHHH-----HhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhh
Q 004393 583 ATFGDYFMDVKM-----FIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVEN 657 (756)
Q Consensus 583 ~ti~dy~~d~~~-----~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~ 657 (756)
.-+..|..-+.. .+.++....+++.+...+....+..+-+-| +|+..|-..|..|.+.+...+..+.+...+ .
T Consensus 99 ~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vk-KCs~eGRalM~lD~q~~~~~le~l~~~~~~-p 176 (234)
T PF10474_consen 99 QEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVK-KCSNEGRALMQLDFQQLQNKLEKLSGIRPI-P 176 (234)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChhhHHHHHHHHHHHHHHHHHHcCCCCC-c
Confidence 887777655521 224555666777666666666666654433 379999999999999999999988653321 1
Q ss_pred hhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHHHHH
Q 004393 658 RVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVLQEC 718 (756)
Q Consensus 658 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l~~~ 718 (756)
...-++..++-.=+ |.+ ++...++.++..|..++.+|+.+=...+|..++.+++.+
T Consensus 177 ~~~~Ve~YIKAyYl-~e~----e~~~W~~~h~eYs~~ql~~Lv~~~~~~~kk~r~~ll~~i 232 (234)
T PF10474_consen 177 NREYVENYIKAYYL-PEE----ELEEWIRTHTEYSKKQLVGLVNCAAASKKKTRQRLLNAI 232 (234)
T ss_pred cHHHHHHHHHHHcC-CHH----HHHHHHHhCcccCHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 23444445544333 222 344456667899999999999987766788888888654
No 15
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.87 E-value=0.032 Score=59.62 Aligned_cols=260 Identities=13% Similarity=0.147 Sum_probs=122.4
Q ss_pred ccccCchhhHHHHHHHHHHHHHhhCchhHH-----HHHHHHHHHHH-HH-HHHHHHHHHcCCCCCCCchhhHHhccchHH
Q 004393 434 KLYTPAAVDLFRILGEQVQIVRENSTDIML-----YRIALAIIQVM-ID-FQAAERERLAEPAPEIGLEPLCAMINNNLR 506 (756)
Q Consensus 434 ~~~t~~~~dlfqmi~qql~~a~~~~~~~~~-----~~v~~~~~~~l-~~-f~~~~~~~l~~~~~~~~~~~lia~~N~~~~ 506 (756)
.+.|+....++..|+.-+.-+..-..+... -.++...+..| .. +-....+.+..+ .+++.++=++.|..+
T Consensus 28 lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~~---~~l~qi~Qi~iNl~~ 104 (311)
T PF04091_consen 28 LPFSQMVPMCCRQIRSFIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSKIRSS---LNLSQIVQIVINLEY 104 (311)
T ss_dssp SSSBTHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T---S-HHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHhHHH
Confidence 556666666666666665544432222111 02222222222 11 222233344433 567778877777777
Q ss_pred hHHHHHHHHHHhhhhC--CcchhhhcchHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCc------ch-
Q 004393 507 CYDLAMELSTSTMEAL--PPNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDG------QV- 577 (756)
Q Consensus 507 c~e~~~~l~~~~~~~v--~~~~~~~i~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~------~~- 577 (756)
+..-+..++.-+.... +..-...+. -...+.|.+..+.|-..|...+-.. +...+ .+-.-.|... +.
T Consensus 105 le~Ac~~le~~l~~~~~~~~~~~~~~~-l~a~~~f~~~r~~Ae~~I~~lv~~K--IDe~l-ela~yDW~~~~~~~~ps~y 180 (311)
T PF04091_consen 105 LEKACKELEEFLSSLRGIPQSAGGHIR-LKATKMFKDARKAAEKRIFELVNSK--IDEFL-ELAEYDWTPTEPPGEPSDY 180 (311)
T ss_dssp HHTTHHHHHHHHHHHHT-----------------S---TTHHHHHHHHHHHHH--HHHHH-TT--TT--------S--HH
T ss_pred HHHHHHHHHHHHHHHcCCCccchHhHh-hhhHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhcccceecCCCCCCCCHH
Confidence 6666666665443322 111111111 2335777777778888888777665 66666 5555679863 12
Q ss_pred hHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-cccHHHHHHHHhHHHHHHHHHHcccc----h
Q 004393 578 TEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKN-YIRELTIERLRVDEEVITDFFREYIS----I 652 (756)
Q Consensus 578 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~-~~~~~~a~~i~~D~~~l~~~F~~l~s----~ 652 (756)
+..++.-++..+...-..|.+...+.++-...+++....+.-|+.... .++..|..++..|+..+..|....+. .
T Consensus 181 i~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~ 260 (311)
T PF04091_consen 181 INDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNI 260 (311)
T ss_dssp HHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SSSS--S
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCccccc
Confidence 555555555555432224667788888888999888888888865433 24889999999999999999998843 2
Q ss_pred hhhhhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHH
Q 004393 653 NKVENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVA 701 (756)
Q Consensus 653 ~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~ 701 (756)
..+...|.-+..+.+++..++++.+ .++..-.++|+.+.++.+..||.
T Consensus 261 ~~L~~~F~eLrQlvdLl~s~~~~~y-~d~~~r~~kY~~v~p~~~~~lLe 308 (311)
T PF04091_consen 261 PSLRETFAELRQLVDLLLSDDWEEY-LDPGIRERKYSRVKPEKAIKLLE 308 (311)
T ss_dssp STTGGGGHHHHHHHHHHH-------------------------------
T ss_pred ccHHHHHHHHHHHHHHHhcCCHHHH-hCccccccccCCCCHHHHHHHHH
Confidence 2355678889999999988899988 67777778999999999888875
No 16
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=96.58 E-value=0.62 Score=49.46 Aligned_cols=139 Identities=13% Similarity=0.144 Sum_probs=110.6
Q ss_pred HHHHHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 004393 14 AVREVAKLLTLP-DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (756)
Q Consensus 14 a~~~v~~ll~~p-~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (756)
++.+.=+.+|.. .+++-++....++......|+.+|...|..+-++--.|+..+++.+.++......+...++....+.
T Consensus 15 ~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~~~~ 94 (291)
T PF10475_consen 15 PVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLKSAD 94 (291)
T ss_pred chHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555 5677899999999999999999999999999999999999999999988888888888888888776
Q ss_pred Hhhhc-hHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHh
Q 004393 93 TLIEN-HDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (756)
Q Consensus 93 ~~v~~-~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~ 153 (756)
+.+.. =-.|-.....+.|+..+...|+.+..+.+.....+.++.++. ...|..-+.+.++
T Consensus 95 ~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~d-y~~Al~li~~~~~ 155 (291)
T PF10475_consen 95 ENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGD-YPGALDLIEECQQ 155 (291)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHH
Confidence 66444 355668899999999999999999998888888888888775 5555554444443
No 17
>KOG2218 consensus ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=4.1 Score=47.35 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=115.9
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCc-----------c-hhHHHHHhHHHHHHHHHHHhhhh
Q 004393 532 FEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDG-----------Q-VTEYLTATFGDYFMDVKMFIEER 599 (756)
Q Consensus 532 ~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~-----------~-~v~~i~~ti~dy~~d~~~~L~~~ 599 (756)
|+.+.+.+..+....+..++..++.. +++..+..+..+|..- + .+--.+.++++++.++...|.|.
T Consensus 548 F~~~~~~leel~~~~~~~~iv~~l~~--~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l~~l~~~l~~~ 625 (737)
T KOG2218|consen 548 FEEVSNFLEELMSTWMLKLIVHLLQN--LKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHLDDLEENLNPL 625 (737)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh--hHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHHHHHHHhhChh
Confidence 55666666666666777777777777 8899999998888751 1 13344577888899998888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChh----
Q 004393 600 SFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVD---- 675 (756)
Q Consensus 600 ~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~---- 675 (756)
-|..++..+...+.+.|..-++-+..+++..++.+...|+..|...|+.|.-.. ...|+.+--+..|+++..++
T Consensus 626 ~fs~~~~~l~~~idv~~~~e~il~~~~f~~~~~~~f~~Da~~L~~~fs~yc~rp--~~~f~~l~e~~~vL~l~e~~~~l~ 703 (737)
T KOG2218|consen 626 DFSAIWRNLQENIDVYVFEEIILKNHKFESSGLFQFVHDAKRLLEVFSEYCVRP--LLKFKSLRELVCVLKLEEGELRLK 703 (737)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhcccccch--hHHHHHHHhhhhhhhhcccHhhhh
Confidence 999999999998888888877766666789999999999999999999985422 13455555566666554432
Q ss_pred -hHHHHHHHHHhhC--CCCCHHHHHHHHHhc
Q 004393 676 -AFALIYTNILEHQ--PDCPPEVVERLVALR 703 (756)
Q Consensus 676 -~~~~~~~~l~~~~--pD~s~~~v~~iL~~R 703 (756)
.+...+...++.| ..++...++.+|..|
T Consensus 704 ~~Ls~~~~~~le~~~i~~Ls~~di~~~l~~r 734 (737)
T KOG2218|consen 704 DALSRPGTKCLEELGIKYLSDQDIEDVLYRR 734 (737)
T ss_pred hhhcccHHHHHHHhhhhhcCHHHHHHHHHHH
Confidence 1111222333322 344555566555554
No 18
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.07 E-value=0.26 Score=46.24 Aligned_cols=100 Identities=14% Similarity=0.184 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHH
Q 004393 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNAR 108 (756)
Q Consensus 30 kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~ 108 (756)
..+.-..++.+-+..++..|+..|..+-++...++..-+.....|++-++++..++....+|...+..- ++++++....
T Consensus 37 g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s 116 (142)
T PF04048_consen 37 GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS 116 (142)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 366777889999999999999999999999999999999999999999999999999999998777655 7777775555
Q ss_pred HHHH---HHHHHHHhhhcHhHHHH
Q 004393 109 NNLS---TTLKDVEGMMSISVEAA 129 (756)
Q Consensus 109 ~nl~---~~~~~l~~l~~~~~~~~ 129 (756)
..+. .++..++.+..+|+.++
T Consensus 117 ~~~~~mi~iL~~Ie~l~~vP~kie 140 (142)
T PF04048_consen 117 QEYKEMIEILDQIEELRQVPDKIE 140 (142)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHh
Confidence 4444 45566677777777765
No 19
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=3.6 Score=46.65 Aligned_cols=75 Identities=8% Similarity=0.135 Sum_probs=43.4
Q ss_pred HHHHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004393 15 VREVAKLLTLP-DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQT-GLESLALSEQMISQLRENFISIERYCQ 89 (756)
Q Consensus 15 ~~~v~~ll~~p-~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~-gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (756)
.+.++...-.+ |-++.+.++-..+..-....+.+|++.+.+++-.... =++.....+..+..+.+.+.++..-|.
T Consensus 19 ~kiL~~~~~~dkd~~~aL~~ls~~~~eN~~~~RRnLr~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~ 95 (655)
T KOG3758|consen 19 SKILNNRTYSDKDALAALRALSTFFEENSLRARRNLRSDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCD 95 (655)
T ss_pred HHHHHhcccCcHHHHHHHHHHHHHHHhhhHHHHhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566 4445677777777666666677788887776644432 233355555555555555555554444
No 20
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=14 Score=42.10 Aligned_cols=179 Identities=13% Similarity=0.237 Sum_probs=95.4
Q ss_pred cccCCCcchHHHHHHHHHHHHHHHHHHHHhhc------cCCCChhhHHHHhchhHH-HHHHHhcCCCCcccccccCCCCc
Q 004393 323 APCFPPRYEIFQLMVNLYTERFIQMLRLLSDR------ANELTNIEILKVTGWVVE-YQDNLIGLGVDESLAQVCSESGA 395 (756)
Q Consensus 323 ~~~fP~~~~I~~~~~~~yh~~l~~~L~~l~~~------~~~l~~~~ll~ll~wv~~-Y~~~l~~l~i~~~~l~~ll~~~~ 395 (756)
-+-||.+.++.+.-+...-..+.+.++--++. ....+.--+..-+.|..+ |-.+|..+.-. ++. .+.-
T Consensus 667 lnqfpqelnvgk~saevmw~lfaqdmk~aleeh~k~~~cksadymnl~fkvk~ly~eyv~dlp~~k~~---vpe--ypaw 741 (1283)
T KOG1011|consen 667 LNQFPQELNVGKLSAEVMWSLFAQDMKYALEEHAKKKLCKSADYMNLHFKVKWLYNEYVADLPTYKSS---VPE--YPAW 741 (1283)
T ss_pred hhhChhhhccccchHHHHHHHHHHHHHHHHHHHhhhccccCcchhheeeehhhhHHHHHhhchhhhcc---CCC--chHH
Confidence 34588888887776664444444444433320 112333344555667655 55555433111 110 0122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCC-CCCCCCCccccCchhhHHHHHHHHHHHHHhh-Cchh-HHHHHHHHHHH
Q 004393 396 MDPLMNSYVERMQATTKKWYLNILDADKVQP-PKRTEDGKLYTPAAVDLFRILGEQVQIVREN-STDI-MLYRIALAIIQ 472 (756)
Q Consensus 396 ~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~~-Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~-~~~~-~~~~v~~~~~~ 472 (756)
++++.-+++.--.+--.+++.++++.++... |.+ .+...++.+.+|+|.-+|+.+...... +++. +.......+.+
T Consensus 742 f~pfv~qwldenee~s~dflrga~e~dkkdgf~qt-seha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfak 820 (1283)
T KOG1011|consen 742 FEPFVMQWLDENEEVSMDFLRGALERDKKDGFQQT-SEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAK 820 (1283)
T ss_pred HHHHHHHHhccchHHHHHHHHhHhhcccccCcccc-chhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4455556666555555678888888776532 333 445667889999999999999887742 2221 11122233333
Q ss_pred HHHHHHHHHHHHHcCCCCCC--CchhhHHhccchHHh
Q 004393 473 VMIDFQAAERERLAEPAPEI--GLEPLCAMINNNLRC 507 (756)
Q Consensus 473 ~l~~f~~~~~~~l~~~~~~~--~~~~lia~~N~~~~c 507 (756)
.+.+.+-.|.+.+.+..+.. .-..-|.+.||....
T Consensus 821 ti~kvllqyadivskdfp~y~~keklpcilmnnvqql 857 (1283)
T KOG1011|consen 821 TINKVLLQYADIVSKDFPKYCHKEKLPCILMNNVQQL 857 (1283)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCeeeeccHHHH
Confidence 44444444555554433221 112247778886543
No 21
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=92.13 E-value=2.3 Score=45.87 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=63.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHH
Q 004393 395 AMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVM 474 (756)
Q Consensus 395 ~~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l 474 (756)
.+++|+..|+....--+.+-+.++++.+.. |..+..+.++|+..-|+|.++++++.+|...+.-.....+++.+...|
T Consensus 234 kvqell~~Y~~le~~y~~~Sv~KAi~lde~--~~~~~~~~~~SS~VDDvffil~k~l~RalsT~~~~~v~a~in~~~~~L 311 (324)
T smart00762 234 KIQELLGTYVPLETYYFRRSVEKAIKLDEL--PSDEDKDPLTSSMVDDVFYLLRKVLRRALSTGNIASLTAFINELASVL 311 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CcccCCCCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999977632 323456889999999999999999999987666555546676666666
Q ss_pred HH
Q 004393 475 ID 476 (756)
Q Consensus 475 ~~ 476 (756)
.+
T Consensus 312 ~~ 313 (324)
T smart00762 312 QN 313 (324)
T ss_pred HH
Confidence 33
No 22
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=91.88 E-value=7.1 Score=36.05 Aligned_cols=110 Identities=17% Similarity=0.155 Sum_probs=82.0
Q ss_pred HHHHHHhhcC----CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004393 14 AVREVAKLLT----LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQ 89 (756)
Q Consensus 14 a~~~v~~ll~----~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (756)
|..+.+.++. ..++=..+..-..++..-+..++.+|.+.|.+.-+.-=.-...+..+...+..|+..+..+..-+.
T Consensus 10 ~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~ 89 (132)
T PF10392_consen 10 PVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYE 89 (132)
T ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665 222233477788889999999999999999877777666666777777788888888888877777
Q ss_pred HhH-HhhhchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004393 90 ECQ-TLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 90 ~~~-~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (756)
.-. ..+.-|..|+....+-+|+-+|...|.+...
T Consensus 90 RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r 124 (132)
T PF10392_consen 90 RLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSR 124 (132)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 664 3446678888888888888888777766654
No 23
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=2.1 Score=49.93 Aligned_cols=122 Identities=16% Similarity=0.047 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccc----cHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhh-ccCCh
Q 004393 600 SFRRFVEACLEETIVIYIDHLLTQKNYI----RELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELA-SANSV 674 (756)
Q Consensus 600 ~~~~l~~~l~~~~v~~Yi~~l~~~k~~~----~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll-~~~~~ 674 (756)
....-..+.+..++.+|++.+......| -..+...+..+.+.|.++|..+.+.. .+.-.++..++.+. ...+
T Consensus 233 ~w~~~~~e~~r~~i~EdL~~~~~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~dl~s~~--l~~~eil~llawV~~~~~~- 309 (667)
T KOG2286|consen 233 EWQVRLLEVLRFVIREDLRVAKRVLVPCFPPHYNIFSAYLELYHQALSDLLRDLASEA--LELREILQLLAWVRNEYYT- 309 (667)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHHhcC-
Confidence 3344455566668888888876432222 36788899999999999999998754 23446677777776 3334
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh
Q 004393 675 DAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVLQECKEIYEN 724 (756)
Q Consensus 675 ~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l~~~~~~~~~ 724 (756)
..+..+...+.+.+|++++.|+.+|++.+.-...+..++.+..+.++...
T Consensus 310 ~~l~~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~ 359 (667)
T KOG2286|consen 310 PLLQLNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAA 359 (667)
T ss_pred hhhhccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888899999999999999999877777888888888777555
No 24
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=90.58 E-value=3.2 Score=44.95 Aligned_cols=115 Identities=10% Similarity=0.082 Sum_probs=77.6
Q ss_pred hHHHHhchhHHHHHHHh-c---CCC-Ccc---cccccCCCC----ch-hhHHHHHHHHHHHHHHHHHHHHHhhcccC--C
Q 004393 362 EILKVTGWVVEYQDNLI-G---LGV-DES---LAQVCSESG----AM-DPLMNSYVERMQATTKKWYLNILDADKVQ--P 426 (756)
Q Consensus 362 ~ll~ll~wv~~Y~~~l~-~---l~i-~~~---~l~~ll~~~----~~-~~L~~~Y~~~~~~~l~ewl~~~l~~er~~--~ 426 (756)
|+-.+++-..-|.+.|. + .+- +.+ .+++++..+ .+ +.|+..|+.+....+.+-+.+++..|.-. .
T Consensus 190 Eis~i~~~w~lY~rFi~~k~~~~~~~~~~~~~~~~~~~~~s~~~~k~~qell~~Y~~Le~~y~~~Sv~KAi~lde~p~~~ 269 (331)
T PF08318_consen 190 EISLILQRWSLYCRFISRKWNEFSDPDPEKQLKLPPLISSSNLSRKVNQELLGYYIPLEEFYLRRSVEKAIQLDELPSLN 269 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33444554456888774 3 211 111 123333322 35 89999999999999999999999887431 1
Q ss_pred CCCCCCCccccCchhhHHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHH
Q 004393 427 PKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDIMLYRIALAIIQVMID 476 (756)
Q Consensus 427 Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~~~~~v~~~~~~~l~~ 476 (756)
+..+.++.++|+..-|+|.+++.++.+|-..+.-.....+++.+...|.+
T Consensus 270 ~~~~~~~~~~SS~vDDvffil~k~l~RalsTg~~~~v~a~in~~~~iL~~ 319 (331)
T PF08318_consen 270 SLLDSSSPPTSSVVDDVFFILRKVLRRALSTGSIDTVCAVINHLVRILQN 319 (331)
T ss_pred ccccCCCcchhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 12246789999999999999999999987666544444666666666644
No 25
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=90.54 E-value=1.7 Score=38.39 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHHHHHHH
Q 004393 604 FVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFALIYTN 683 (756)
Q Consensus 604 l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~ 683 (756)
++..+...+-..-++.|+.++..+...-|-+|+..+..+.++..+.+-...+...+..+-..+.++.+ +...+. ++..
T Consensus 2 ~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~~~~~l~~l~Qa~~lL~~-~k~~~~-d~~~ 79 (105)
T PF01843_consen 2 LFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEAAEEHLQPLSQAANLLQL-RKSTLQ-DWDS 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH-HHHCHHHHHHHHHCCC---SSHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHh-cCcchh-HHHH
Confidence 34455555566667788877777889999999999999999999876654455678888899999877 444455 7888
Q ss_pred HHhhCCCCCHHHHHHHHHh
Q 004393 684 ILEHQPDCPPEVVERLVAL 702 (756)
Q Consensus 684 l~~~~pD~s~~~v~~iL~~ 702 (756)
+...+|.+++..+.+||..
T Consensus 80 ~~~~c~~Ln~~Qi~~iL~~ 98 (105)
T PF01843_consen 80 LRETCPSLNPAQIRKILSN 98 (105)
T ss_dssp HCCCTTTS-HHHHHHHHCC
T ss_pred HHHHcccCCHHHHHHHHHh
Confidence 8889999999999999864
No 26
>PF15469 Sec5: Exocyst complex component Sec5
Probab=89.83 E-value=21 Score=34.89 Aligned_cols=136 Identities=15% Similarity=0.261 Sum_probs=76.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhHHhHH----hhhchHHHHHHHHHHHHHHHHHH
Q 004393 47 SQLSTMVAEQIEQAQTGLESLALSEQMISQLREN------FISIERYCQECQT----LIENHDQIKLLSNARNNLSTTLK 116 (756)
Q Consensus 47 ~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~------~~~i~~~~~~~~~----~v~~~~~Ik~l~~~~~nl~~~~~ 116 (756)
++|++.|++..+..-.+...|......+...... +..++....++.. +.+.+-+-++-....++.-.+++
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l~ 81 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFLQ 81 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4677788877777777777777666666544332 3444433333322 22222111222222233334467
Q ss_pred HHHhhhcHhHHHHHHHhhccCC--hhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHhhcHHHHHHHHHHHHHHHH
Q 004393 117 DVEGMMSISVEAAEAKDSLGDD--KELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYI 194 (756)
Q Consensus 117 ~l~~l~~~~~~~~~~~~~l~~~--~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~l~~~F~~v~~l~~~f~~~l~~~~ 194 (756)
..+.|+.+|..+.+. +..+ .+++.-|.+-..+-.. .......+...|..|+.+++.|...+|.-+
T Consensus 82 r~~flF~LP~~L~~~---i~~~dy~~~i~dY~kak~l~~~----------~~~~~~vf~~v~~eve~ii~~~r~~l~~~L 148 (182)
T PF15469_consen 82 RNRFLFNLPSNLREC---IKKGDYDQAINDYKKAKSLFEK----------YKQQVPVFQKVWSEVEKIIEEFREKLWEKL 148 (182)
T ss_pred HHHHHHHhHHHHHHH---HHcCcHHHHHHHHHHHHHHHHH----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999877643 3333 2344444333322110 111345788899999999999999999744
Q ss_pred H
Q 004393 195 S 195 (756)
Q Consensus 195 ~ 195 (756)
.
T Consensus 149 ~ 149 (182)
T PF15469_consen 149 L 149 (182)
T ss_pred h
Confidence 3
No 27
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=86.96 E-value=11 Score=31.74 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=51.9
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004393 14 AVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQ 89 (756)
Q Consensus 14 a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (756)
|-.++.++|++.. +..|..+.+++..++...+.+|+..|-......-.+-..+..-..++.+++..+..+...+.
T Consensus 8 ~~~~~~~~l~~~s-~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 8 VDEYFKDLLKNSS-IKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457788888766 78899999999999999999999999765544444444444444555555555554444443
No 28
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=84.52 E-value=58 Score=39.20 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=106.7
Q ss_pred hHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHH
Q 004393 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNAR 108 (756)
Q Consensus 30 kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~ 108 (756)
.++.+..++.++.+.+|+.--..+-+.-..+..-+..+..|...+.++...+...+........-+..+ .+=+.+....
T Consensus 2 dad~~~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~ 81 (701)
T PF09763_consen 2 DADAFEERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQS 81 (701)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHH
Confidence 467888999999999999876666666666777777888888888888888887776666655555555 2233467777
Q ss_pred HHHHHHHHHHHhhhc---HhHHHHHHHhhccCC-----hhHHHHHHHHHHHHhhHHHHHHHhh-------hchHHHHHHH
Q 004393 109 NNLSTTLKDVEGMMS---ISVEAAEAKDSLGDD-----KELINTYERLTALDGKRRFALAAAE-------SHKEEVGRLR 173 (756)
Q Consensus 109 ~nl~~~~~~l~~l~~---~~~~~~~~~~~l~~~-----~~Ll~ah~~L~~Le~~Rd~~l~~~~-------~~~~~~~~l~ 173 (756)
+|-....+.|+.|.. +|+.. ...|..+ ..|-.+...+..|-. +|..+. ........+.
T Consensus 82 ~N~k~L~~eL~~Ll~~l~i~~~~---l~~L~~~~l~~~~~l~~~e~a~~~L~~----Al~~i~~~~~~~~~~~~~M~Av~ 154 (701)
T PF09763_consen 82 ANQKLLLNELENLLDTLSIPEEH---LEALRNASLSSPDGLEKIEEAAEALYK----ALKAIRPDLEKLDPGLGQMRAVK 154 (701)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHH---HHHHhcCCCCCcccHHHHHHHHHHHHH----HHHhcccccccCCCcHHHHHHHH
Confidence 787777777777654 44432 2333332 225555555555543 333211 1122456677
Q ss_pred HHhhcHHHHHHHHHHHHHHHHHHHHH
Q 004393 174 EYFEDVDQIWETFEKTLWGYISNFYK 199 (756)
Q Consensus 174 ~~F~~v~~l~~~f~~~l~~~~~~~l~ 199 (756)
..-+.+..+...|.+++...+.+.+.
T Consensus 155 er~~~~~~~~~~F~~r~~~~l~~~F~ 180 (701)
T PF09763_consen 155 ERREEYEKVSDKFCKRLSRFLNNMFK 180 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888777776663
No 29
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=78.98 E-value=1.1e+02 Score=33.83 Aligned_cols=79 Identities=15% Similarity=0.287 Sum_probs=50.6
Q ss_pred cCChhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhc-C----Cchhhh
Q 004393 136 GDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKE-S----PQTLVR 210 (756)
Q Consensus 136 ~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~-~----p~~lv~ 210 (756)
++.-++|.|-.+|. ..|..| .++..+......+..+...+..+|..-+..++..... + +..|..
T Consensus 134 ~e~a~~L~av~~L~--~~F~~y---------ksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~ 202 (383)
T PF04100_consen 134 KEIASLLQAVKELL--EHFKPY---------KSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSD 202 (383)
T ss_pred HHHHHHHHHHHHHH--HHHHcc---------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHH
Confidence 33445777776666 334332 2234677777889999999999998888877622221 2 256889
Q ss_pred HHHHHhh-hhhhhHHH
Q 004393 211 ALRVVEM-QEILDQQL 225 (756)
Q Consensus 211 ~~rIie~-EE~~D~~~ 225 (756)
||.|++. ......++
T Consensus 203 aC~vvd~L~~~~r~~l 218 (383)
T PF04100_consen 203 ACLVVDALGPDVREEL 218 (383)
T ss_pred HHHHHHHcCchHHHHH
Confidence 9999987 44444444
No 30
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.13 E-value=1.6e+02 Score=34.87 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=97.1
Q ss_pred hhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhh
Q 004393 577 VTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVE 656 (756)
Q Consensus 577 ~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~ 656 (756)
++..+|.-+.+++.-+...+.....+.|..++..++-..-++.+-+++ .+..||-.+.-|+.-.++|..+++... |.
T Consensus 626 pa~~vVq~L~~~~~~l~~~~dg~nLd~~~~eig~rlf~~l~~hl~~~~--~s~~Gal~licDvn~y~~~i~~~~~~~-vl 702 (763)
T KOG3745|consen 626 PAIRVVQFLGNHIEQLKGRLDGENLDVFLQEIGTRLFRLLLSHLQQFK--VSTAGALLLICDVNEYRTFIHSLGQPS-VL 702 (763)
T ss_pred HHHHHHHHHHHHHHHHHcccCCchHHHHHHHHHHHHHHHHHHHHHHhe--eccccceeeeccHHHHHHHHHHhCccc-HH
Confidence 466677778888887777788888888888888888777777776655 478899999999999999999887665 56
Q ss_pred hhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCC
Q 004393 657 NRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIP 707 (756)
Q Consensus 657 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~ 707 (756)
..|+.|..|+.++..++ +.+. ++.. -+.-.+++.+.|.-++.+|.|++
T Consensus 703 ~~F~tL~~L~nLliV~p-d~l~-ev~k-~~~la~f~~~~I~efv~lR~D~r 750 (763)
T KOG3745|consen 703 PYFKTLKALANLLIVKP-DNLE-EVGK-GKFLANFDREEIHEFVQLRTDFR 750 (763)
T ss_pred HHHHHHHHHHHHHeeCh-hhHH-HHhc-hhhhccccHHHHHHHHHHhhhhh
Confidence 78999999999987644 4443 3332 11226899999999999999975
No 31
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.82 E-value=1.8e+02 Score=35.10 Aligned_cols=184 Identities=14% Similarity=0.132 Sum_probs=109.1
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHh---hhc-cccccC---c--ch-hHHHHHhHHHHHHHHHHHhhhhHH
Q 004393 532 FEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLV---KLY-QKEWSD---G--QV-TEYLTATFGDYFMDVKMFIEERSF 601 (756)
Q Consensus 532 ~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~---~lf-t~~W~~---~--~~-v~~i~~ti~dy~~d~~~~L~~~~~ 601 (756)
++++.++|.+++..|.-.|--+|-.. |=.++. .+- +.-|+. + |+ +..+..++...-..++.-|.|.=+
T Consensus 775 ~ee~~~~fq~la~~cLLlLhlEVRv~--Cfh~l~~~s~~~n~~i~~~~~s~e~D~~V~aL~k~l~~~e~klk~~L~e~k~ 852 (982)
T KOG3691|consen 775 YEELADSFQRLAFDCLLLLHLEVRVQ--CFHYLNPLSKLRNTSIVNRDVSGEPDPSVVALNKDLSTTEEKLKACLNEWKR 852 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcchhhccCCceeecccccCCCCHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 45678899999998888776555332 333333 222 456887 3 44 667777777776777766766555
Q ss_pred HHHHHHH---HHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHH
Q 004393 602 RRFVEAC---LEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFA 678 (756)
Q Consensus 602 ~~l~~~l---~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~ 678 (756)
+...+-+ ....+..|-+-+- ..++.+..||++.+-.+..-++......++ -++.-..+-+++. ..++.+.
T Consensus 853 ~yIFeGL~hL~s~~LI~~a~~i~----~ln~~~ikkMcRNv~~lQQ~Lsnit~~rev--dld~ar~fy~ll~-nt~deil 925 (982)
T KOG3691|consen 853 RYIFEGLGHLVSSILISGAQYIE----RLNEGGIKKMCRNVSALQQILSNITESREV--DLDKARRFYELLQ-NTADEIL 925 (982)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHHhccccccc--ccHHHHHHHHHHh-cCHHHHH
Confidence 5554433 2333333322221 146889999999999999999988765433 3455556666665 4556666
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHH--hcCCCChHhHHHHHHHHHHHHHh
Q 004393 679 LIYTNILEHQPDCPPEVVERLVA--LRDGIPRKDAKEVLQECKEIYEN 724 (756)
Q Consensus 679 ~~~~~l~~~~pD~s~~~v~~iL~--~R~Dl~r~~~~~~l~~~~~~~~~ 724 (756)
..+..=...|-..-..++.++.. .+|+.++.-+.+.++...++++.
T Consensus 926 e~v~d~~~qfse~e~~qllrls~rS~~g~~k~~~~~e~~qkl~n~i~~ 973 (982)
T KOG3691|consen 926 EHVIDARKQFSEPELKQLLRLSYRSLKGDAKRNGRDELLQKLSNIIGG 973 (982)
T ss_pred HHHHhccccccHHHHHHHHHHHHHhhccccCCCchHHHHHHHHHHHhh
Confidence 54443333332211223333333 24677777777777777777653
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=76.74 E-value=93 Score=31.80 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004393 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALS 70 (756)
Q Consensus 28 L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a 70 (756)
|.+|+.-+.++..+..+...-|+.+ ++.+++....+..++.+
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~-~~e~e~~~~~~~~~~~e 53 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKA-KAELEALNKALEALEIE 53 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3455555555655655555555554 55555555554444433
No 33
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=76.60 E-value=88 Score=34.66 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHH
Q 004393 71 EQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDV 118 (756)
Q Consensus 71 ~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l 118 (756)
...|.+|.+.+..++..|.--+.++.+++.++.++.--.++..++..|
T Consensus 294 e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~l 341 (388)
T PF04912_consen 294 ESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSEL 341 (388)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566666666655555555555555544444444444433
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=76.55 E-value=21 Score=32.53 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhHH
Q 004393 29 QFIGDMKADYIARQQANDSQLSTM 52 (756)
Q Consensus 29 ~kl~~~~~~~~~~~~~id~~Lk~~ 52 (756)
+.|...|+.+++|+..++.+|...
T Consensus 57 ~~l~~tKkhLsqRId~vd~klDe~ 80 (126)
T PF07889_consen 57 ESLSSTKKHLSQRIDRVDDKLDEQ 80 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 357777777777777777666443
No 35
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=76.24 E-value=1.2e+02 Score=32.85 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=55.1
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHhHHhhhch-
Q 004393 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSE-------QMISQLRENFISIERYCQECQTLIENH- 98 (756)
Q Consensus 27 ~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~-------~~v~~l~~~~~~i~~~~~~~~~~v~~~- 98 (756)
+++.+..--.++..++++++.+|.+.....-...-..-+.+.... ..+..+...+.+..+.|.......++.
T Consensus 8 ~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~ 87 (338)
T PF04124_consen 8 SLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKIS 87 (338)
T ss_pred CHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666778888888888888887755544444333333333 344444555555555555544444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHhHHHH
Q 004393 99 DQIKLLSNARNNLSTTLKDVEGMMSISVEAA 129 (756)
Q Consensus 99 ~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~ 129 (756)
...+....+.+|. +.+-.+..+|..++
T Consensus 88 ~~r~~~~~~l~~~----~~l~diLElP~Lm~ 114 (338)
T PF04124_consen 88 EERKKASLLLENH----DRLLDILELPQLMD 114 (338)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhhHHHHH
Confidence 3344444444444 33555666665554
No 36
>PF14923 CCDC142: Coiled-coil protein 142
Probab=74.41 E-value=55 Score=36.59 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=56.1
Q ss_pred hHHHHHh-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHc
Q 004393 578 TEYLTAT-FGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFRE 648 (756)
Q Consensus 578 v~~i~~t-i~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~ 648 (756)
+...+.+ +...++-.+ ++.+..--..+..+...+....+..|++.|.+|+..||-|+++|...+.++..+
T Consensus 278 v~~~v~~vl~PVl~g~q-~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF~~Vr~wl~~ 348 (450)
T PF14923_consen 278 VEYVVETVLEPVLQGVQ-GLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDFGYVRDWLES 348 (450)
T ss_pred HHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHHHHHHHHHHh
Confidence 4444444 345555556 566666667778888889999999999999989999999999999999999987
No 37
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=72.11 E-value=1.1e+02 Score=30.37 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHHHHHHHHHHHHHhhhcHhHHH
Q 004393 50 STMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEA 128 (756)
Q Consensus 50 k~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~ 128 (756)
...++.+++.++.-+..|+.+...+..++- ..++...+.-+..+++.. ++-+++..+++-+..- +|..+
T Consensus 70 ~~~~~~~l~ea~~~i~~i~~~~~~i~~~~~-~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~y---------Lp~~~ 139 (199)
T PF10112_consen 70 YEYIREILEEAKEKIRRIEKAIKRIRDLEM-IEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYY---------LPTAV 139 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHH---------hhHHH
Confidence 345677777777777777776666665542 233444444444455555 4455555555555431 22222
Q ss_pred HHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH
Q 004393 129 AEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFY 198 (756)
Q Consensus 129 ~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~l~~~F~~v~~l~~~f~~~l~~~~~~~l 198 (756)
+ |++.|..|..-. ..+.+....+...-+-++.+.+.|++.+..++.+-+
T Consensus 140 ~-----------l~~kY~~l~~~~----------~~~~~~~~~l~e~~~~L~~l~~~f~~~~~~l~~~d~ 188 (199)
T PF10112_consen 140 K-----------LLEKYAELESQP----------VKSEEIKQSLEEIEETLDTLNQAFEKDLDKLLEDDI 188 (199)
T ss_pred H-----------HHHHHHHHHhcc----------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2 444444433321 111222233444445577777777777776655433
No 38
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=67.35 E-value=68 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhcHHHH
Q 004393 167 EEVGRLREYFEDVDQI 182 (756)
Q Consensus 167 ~~~~~l~~~F~~v~~l 182 (756)
.++..|..-|..+..+
T Consensus 276 ~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 276 SEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555444
No 39
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.50 E-value=3.1e+02 Score=33.18 Aligned_cols=105 Identities=13% Similarity=0.220 Sum_probs=76.9
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHH
Q 004393 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKL 103 (756)
Q Consensus 25 p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~ 103 (756)
-++-+-++.-+.++...-.+-++.|...|..+-+...+|+..-+++-..|+..++++..++.-...|...+.-= +++++
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqk 121 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQK 121 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33444444445555544455589999999999999999999999999999999999999999888888888544 67888
Q ss_pred HHHHHHHHHHHHHH---HHhhhcHhHHHH
Q 004393 104 LSNARNNLSTTLKD---VEGMMSISVEAA 129 (756)
Q Consensus 104 l~~~~~nl~~~~~~---l~~l~~~~~~~~ 129 (756)
+-.--.+...+++. ++.+..+|+.++
T Consensus 122 lw~~~~q~K~Vi~vL~eieEl~qvPqkie 150 (982)
T KOG3691|consen 122 LWAENSQYKKVIEVLKEIEELRQVPQKIE 150 (982)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 76555555555554 455555555444
No 40
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=63.21 E-value=12 Score=34.49 Aligned_cols=103 Identities=13% Similarity=0.184 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHH
Q 004393 30 FIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNAR 108 (756)
Q Consensus 30 kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~ 108 (756)
.|+.++..+..-...++++|-..|-.-...--.--..|......|.+++..+..+...-....+.+... ..|...-..+
T Consensus 27 ~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~ 106 (133)
T PF06148_consen 27 SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEER 106 (133)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777788888888888877777543333222222344455566666666666665555555555444 6666666666
Q ss_pred HHHHHHHHHHHhhhcHhHHHHHHH
Q 004393 109 NNLSTTLKDVEGMMSISVEAAEAK 132 (756)
Q Consensus 109 ~nl~~~~~~l~~l~~~~~~~~~~~ 132 (756)
+++......++.+..+.+.+.+.+
T Consensus 107 ~~l~~~k~~l~~~l~~~~~~~kle 130 (133)
T PF06148_consen 107 KELREEKALLKLLLDISESLEKLE 130 (133)
T ss_dssp HHHHHHHHT-SSSSHHH-------
T ss_pred HHHHHHHHHHHHHHHhhhhccccc
Confidence 676666666666666555554443
No 41
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=62.96 E-value=2e+02 Score=30.06 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004393 69 LSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 69 ~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (756)
+.+..|.+|-+-|..-.-.|+--+..|+++.-|++|+---.||..-++.++....
T Consensus 274 ~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q~ 328 (371)
T KOG3958|consen 274 DTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQQ 328 (371)
T ss_pred hhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777778888888888887777777776665554433
No 42
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=62.62 E-value=4e+02 Score=33.41 Aligned_cols=10 Identities=30% Similarity=0.288 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 004393 55 EQIEQAQTGL 64 (756)
Q Consensus 55 ~ql~~~~~gl 64 (756)
.+.+.|..+|
T Consensus 1563 ~~ae~V~eaL 1572 (1758)
T KOG0994|consen 1563 GQAEDVVEAL 1572 (1758)
T ss_pred HHHHHHHHHH
Confidence 3344443333
No 43
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=61.08 E-value=68 Score=37.30 Aligned_cols=86 Identities=15% Similarity=0.253 Sum_probs=45.9
Q ss_pred hHHHhhhccccccCcchhHHHHHhHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhH
Q 004393 561 EQLLVKLYQKEWSDGQVTEYLTATFGDYFMDVKMFIE--ERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVD 638 (756)
Q Consensus 561 ~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~--~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D 638 (756)
+..+..+|+..+- ....+-...+.+.+.+++.|+. ....+..+.++...+....+ .+++....+.+...+++..-
T Consensus 111 e~~~~~~F~~~Y~--~ly~~~~~~~~~lf~~l~~y~~g~~~~l~~~l~~Ff~~Lf~~~f-~llnp~~~~~~dy~~Cl~~~ 187 (557)
T PF01153_consen 111 ENSLHSMFSRTYG--SLYPQNRPIFQDLFTDLRRYYLGSNVNLEEALNEFFDRLFPRVF-RLLNPQYQFSDDYLECLRKA 187 (557)
T ss_dssp HHHHHHHHHHHTT--HHHHCTHHHHHHHHHHHHHHHCCS-S-HHHHHHHHHHHHHHHHH-HHHTTTSB--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHH-HHhccCcCCCchHHHHHHHH
Confidence 4556667766652 2223334445666666666654 23456666666666665555 55554433566777777666
Q ss_pred HHHHHHHHHccc
Q 004393 639 EEVITDFFREYI 650 (756)
Q Consensus 639 ~~~l~~~F~~l~ 650 (756)
.+.|+-| ...|
T Consensus 188 ~~~l~PF-Gd~P 198 (557)
T PF01153_consen 188 MEDLKPF-GDIP 198 (557)
T ss_dssp HHHH-TT-TTHH
T ss_pred HHhhCCc-ccch
Confidence 6666543 4333
No 44
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=59.73 E-value=1.4e+02 Score=27.28 Aligned_cols=46 Identities=13% Similarity=0.233 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004393 76 QLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 76 ~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (756)
+|..+|..++....++.+..+.++ +++..+++++...-..++.++.
T Consensus 65 hLsqRId~vd~klDe~~ei~~~i~--~eV~~v~~dv~~i~~dv~~v~~ 110 (126)
T PF07889_consen 65 HLSQRIDRVDDKLDEQKEISKQIK--DEVTEVREDVSQIGDDVDSVQQ 110 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 344455555544444444433331 2344455555554444444444
No 45
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=57.89 E-value=2.9e+02 Score=30.26 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=14.4
Q ss_pred hhccCChhHHHHHHHHHHHHh
Q 004393 133 DSLGDDKELINTYERLTALDG 153 (756)
Q Consensus 133 ~~l~~~~~Ll~ah~~L~~Le~ 153 (756)
.-+.|+..|+.+...|+.|+.
T Consensus 322 ~~mtD~sPlv~IKqAl~kLk~ 342 (359)
T PF10498_consen 322 SSMTDGSPLVKIKQALTKLKQ 342 (359)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
Confidence 344555458888888888865
No 46
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.53 E-value=3.5e+02 Score=31.08 Aligned_cols=74 Identities=8% Similarity=0.055 Sum_probs=52.7
Q ss_pred hHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-----------------Hhcccc-------------c
Q 004393 578 TEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHL-----------------LTQKNY-------------I 627 (756)
Q Consensus 578 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l-----------------~~~k~~-------------~ 627 (756)
|.+++.-+..+.+-.+..|..+.-+.++.....+....|.... .+++.. .
T Consensus 575 Vv~aLrpvkal~eg~k~~L~q~~~eeil~gv~seit~~yye~vsDVl~sv~ktesSL~Rlkq~~~~~~g~s~gss~~vSd 654 (705)
T KOG2307|consen 575 VVTALRPVKALKEGLKCELEQPHTEEILRGVNSEITNYYYEKVSDVLDSVEKTESSLSRLKQKTTTDSGSSGGSSQTVSD 654 (705)
T ss_pred HHHHHHHHHHHHHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCcCc
Confidence 7778877888887666668888888888888888888885443 111110 0
Q ss_pred cHHHHHHHHhHHHHHHHHHHcccc
Q 004393 628 RELTIERLRVDEEVITDFFREYIS 651 (756)
Q Consensus 628 ~~~~a~~i~~D~~~l~~~F~~l~s 651 (756)
.++...|+..|++...++..++.-
T Consensus 655 dDKir~QL~lDv~~~~s~~~kL~f 678 (705)
T KOG2307|consen 655 DDKIRQQLYLDVKYFLSYAEKLVF 678 (705)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcc
Confidence 256778888898888888888765
No 47
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=57.22 E-value=1.7e+02 Score=29.52 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=80.4
Q ss_pred HHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHhHHHHHHHHHHcccchhhhhh
Q 004393 580 YLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYI--RELTIERLRVDEEVITDFFREYISINKVEN 657 (756)
Q Consensus 580 ~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~--~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~ 657 (756)
|+.+|-+.|+..|. +.-|+.|+.++++++-+. .|+.-..-+ .+.+|=-+ +..+..|+..|++.++
T Consensus 1 TVsDtKr~F~~~~~-~pI~siYrrvv~ELLVe~------HLl~~n~~F~yD~lfalG~---vt~fd~fm~GY~p~~~--- 67 (216)
T PF11264_consen 1 TVSDTKRAFYKAFP-RPIPSIYRRVVDELLVEL------HLLSVNKDFQYDPLFALGL---VTVFDRFMQGYPPEED--- 67 (216)
T ss_pred ChhHHHHHHHHhCC-CCCcHHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHhcCCCChhH---
Confidence 35677788888888 577889999988877653 333322211 34444444 3566677788887764
Q ss_pred hhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHH
Q 004393 658 RVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVL 715 (756)
Q Consensus 658 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l 715 (756)
.-.+++.+..=++. ||+.+..+-..+....-..+...+...|...++-..+....++
T Consensus 68 ~~~If~Alc~a~~~-dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~ 124 (216)
T PF11264_consen 68 KDSIFNALCQALGF-DPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAIL 124 (216)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHH
Confidence 34666667776664 7788887777777666788888888888876444444444444
No 48
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=56.96 E-value=2.4e+02 Score=29.34 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=20.1
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhc
Q 004393 171 RLREYFEDVDQIWETFEKTLWGYISNFYKLSKE 203 (756)
Q Consensus 171 ~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~ 203 (756)
-+++||.+++-=...++..|.. +++|+.
T Consensus 146 GiQKYFvDINiQN~KLEsLLqs-----MElAq~ 173 (305)
T PF15290_consen 146 GIQKYFVDINIQNKKLESLLQS-----MELAQS 173 (305)
T ss_pred hHHHHHhhhhhhHhHHHHHHHH-----HHHHHh
Confidence 4788999988877777766653 666655
No 49
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=56.83 E-value=2.4e+02 Score=29.78 Aligned_cols=34 Identities=24% Similarity=0.406 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHH
Q 004393 105 SNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRR 156 (756)
Q Consensus 105 ~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd 156 (756)
+.++.|| +..|++++.. .|-.+|-++..||..|-
T Consensus 128 ~~vkq~F---ldpL~~l~~~---------------elK~i~hh~KKLEgRRl 161 (366)
T KOG1118|consen 128 DNVKQNF---LDPLQNLQLK---------------ELKDIQHHRKKLEGRRL 161 (366)
T ss_pred HHHHHHH---hHHHHHhhHH---------------HHHHHHHHHHHhhhhhh
Confidence 5677777 6666666441 27788889999998884
No 50
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=55.81 E-value=1e+02 Score=26.30 Aligned_cols=58 Identities=12% Similarity=0.259 Sum_probs=48.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHH
Q 004393 48 QLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLS 105 (756)
Q Consensus 48 ~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~ 105 (756)
+.+..++++++-....++.|..+-+.+..+..+...+......+..++..+..-...+
T Consensus 12 rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D 69 (92)
T PF03908_consen 12 RTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTD 69 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455667888999999999999999999999999999999999998888885444333
No 51
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.64 E-value=1.4e+02 Score=27.46 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=35.6
Q ss_pred chhhhHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004393 3 SEDLGVEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLA 68 (756)
Q Consensus 3 ~~~~~~~a~~~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~ 68 (756)
+......|+++=-+|=.+|..|.++...|..+|..+..-+..+ ..+++..+.+..++....
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~-----~~l~~~~~~a~~~l~~~e 93 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEI-----NELKAEAESAKAELEESE 93 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 4445556666666777777777777777777777665544333 222444454544444433
No 52
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=55.04 E-value=29 Score=24.84 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=20.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHH-hcCCC
Q 004393 680 IYTNILEHQPDCPPEVVERLVA-LRDGI 706 (756)
Q Consensus 680 ~~~~l~~~~pD~s~~~v~~iL~-~R~Dl 706 (756)
.+..|...||+++.+.++.+|. ..||+
T Consensus 4 ~v~~L~~mFP~~~~~~I~~~L~~~~~~v 31 (42)
T PF02845_consen 4 MVQQLQEMFPDLDREVIEAVLQANNGDV 31 (42)
T ss_dssp HHHHHHHHSSSS-HHHHHHHHHHTTTTH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCH
Confidence 3566788899999999999995 44454
No 53
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.65 E-value=2.7e+02 Score=29.03 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 004393 166 KEEVGRLREYFEDVDQIWETFEKTLWGY 193 (756)
Q Consensus 166 ~~~~~~l~~~F~~v~~l~~~f~~~l~~~ 193 (756)
..++..+...|+++..++..=+..|..|
T Consensus 186 E~dI~dvN~IFkdL~~lV~eQG~~VDsI 213 (269)
T KOG0811|consen 186 EADIIDVNEIFKDLGSLVHEQGELVDSI 213 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhHH
Confidence 3567778889999988887766666655
No 54
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=54.13 E-value=6.7e+02 Score=33.38 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHH--HH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 10 AKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVA--EQ------IEQAQTGLESLALSEQMISQLRENF 81 (756)
Q Consensus 10 a~~~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~--~q------l~~~~~gl~~L~~a~~~v~~l~~~~ 81 (756)
.|+.|+ .+++++ .+||+++-+|+.+|-+-=++=|+..-+ +| |-.|..++......-.+|-.-.+.+
T Consensus 398 eRe~AL--r~ELiR----QEKLEqLA~RFdrKAamREtwL~enqrlvsqdnfg~~LaaVEAa~KKheAIetDI~AyeeRv 471 (2473)
T KOG0517|consen 398 ERELAL--RAELIR----QEKLEQLARRFDRKAAMRETWLKENQRLVSQDNFGYDLAAVEAALKKHEAIETDILAYEERV 471 (2473)
T ss_pred HHHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 345555 466665 589999999999998888887777643 22 5677778888888888888888899
Q ss_pred HHHHHHhHHhHHhhhchHHHHHHHHHHHHHHH
Q 004393 82 ISIERYCQECQTLIENHDQIKLLSNARNNLST 113 (756)
Q Consensus 82 ~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~ 113 (756)
..+...|.+-.. ++|.+++++...+.|+..
T Consensus 472 qal~ava~eL~~--E~YHd~~rV~~r~~~V~~ 501 (2473)
T KOG0517|consen 472 QALVAVADELEA--ENYHDIKRVAARKDNVLR 501 (2473)
T ss_pred HHHHHHHHHHHH--hccchHHHHHHHHHHHHH
Confidence 999988888766 689999999999888864
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.00 E-value=1.8e+02 Score=27.93 Aligned_cols=87 Identities=8% Similarity=0.103 Sum_probs=46.6
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch--HHH
Q 004393 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH--DQI 101 (756)
Q Consensus 24 ~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~--~~I 101 (756)
+|+.+..++.=...+..+...+...++.. ++++......+ ...+....|.++..++..+.............. +++
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l-~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~ 147 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSL-EAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEK 147 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 56667777776777777777777776665 45555443222 123355555666666555555544433322222 344
Q ss_pred HHHHHHHHHHH
Q 004393 102 KLLSNARNNLS 112 (756)
Q Consensus 102 k~l~~~~~nl~ 112 (756)
+.+...+..+.
T Consensus 148 ~~~~~~~~~~~ 158 (169)
T PF07106_consen 148 EKLEKEYKKWR 158 (169)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 56
>PRK13266 Thf1-like protein; Reviewed
Probab=52.72 E-value=2.4e+02 Score=28.52 Aligned_cols=116 Identities=15% Similarity=0.141 Sum_probs=80.4
Q ss_pred hHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHhHHHHHHHHHHcccchhhh
Q 004393 578 TEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYI--RELTIERLRVDEEVITDFFREYISINKV 655 (756)
Q Consensus 578 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~--~~~~a~~i~~D~~~l~~~F~~l~s~~~v 655 (756)
..|+.+|-+.|+..|. +.-|+.|+.++++++-+. .|+.-..-+ .+.+|=-+ +..+..|+.+|++.++
T Consensus 4 ~~TVSDtKr~F~~~~p-~pI~siYrrvv~ELLVEl------HLl~~n~~F~yDplfAlGl---vt~fd~fm~GY~Pee~- 72 (225)
T PRK13266 4 RRTVSDSKRAFYAAFP-RPINSIYRRVVDELLVEL------HLLSVNSDFKYDPLFALGL---VTVFDRFMQGYRPEEH- 72 (225)
T ss_pred CCcHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHHcCCCChHH-
Confidence 4567788888998888 688889999999877653 333322212 34455444 3566677788888764
Q ss_pred hhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCC
Q 004393 656 ENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIP 707 (756)
Q Consensus 656 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~ 707 (756)
.-.+++.+..=++. ||..+..+-..+.......+.+.+...|.-.++-.
T Consensus 73 --~~~IF~Alc~a~~~-dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~~~ 121 (225)
T PRK13266 73 --KDSIFNALCQAVGF-DPEQLRQDAERLLELAKGKSLKEILSWLTQKALGE 121 (225)
T ss_pred --HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccccc
Confidence 44666667776664 77888878777877777888888888888765433
No 57
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=52.47 E-value=2.2e+02 Score=30.53 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=7.8
Q ss_pred HHHHHHHHhhcHHHH
Q 004393 168 EVGRLREYFEDVDQI 182 (756)
Q Consensus 168 ~~~~l~~~F~~v~~l 182 (756)
++..|..-|..+..+
T Consensus 272 Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 272 EIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555554
No 58
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=52.24 E-value=2.5e+02 Score=28.05 Aligned_cols=122 Identities=10% Similarity=0.085 Sum_probs=82.4
Q ss_pred HHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHhHHHHHHHHHHcccchhhhh
Q 004393 579 EYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYI--RELTIERLRVDEEVITDFFREYISINKVE 656 (756)
Q Consensus 579 ~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~--~~~~a~~i~~D~~~l~~~F~~l~s~~~v~ 656 (756)
.|+.+|-+.|+..|. +.-|+.|+.++++++-+. .|+.-..-+ .+.+|=-+ +..+..|+.+|++.++
T Consensus 3 ~TVsDtKr~F~~~~p-~pI~siYrrvv~ELLVE~------HLl~~n~~f~yD~lfAlGl---vt~fd~fm~GY~Pee~-- 70 (206)
T PLN03060 3 PTVADTKASFLKAYR-KPIPSIYSNVIQELLVQQ------HLMRYNATYKYDPIFALGF---VTVYDQLMDGYPNATD-- 70 (206)
T ss_pred CcHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHHcCCCChHH--
Confidence 367788888888888 688899999998877653 344322212 34454444 3566677788888764
Q ss_pred hhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHH
Q 004393 657 NRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVL 715 (756)
Q Consensus 657 ~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l 715 (756)
.-.+++.+..=++. ||+.+..+-..+.......+.+.+...|.-.|+ .......++
T Consensus 71 -~~~IF~Alc~a~~~-dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~-~~~~l~~~~ 126 (206)
T PLN03060 71 -RDAIFKAYIEALGE-DPDQYRKDAKKLEEWASSQSASGIADFNSGDGE-VEAVLKDIA 126 (206)
T ss_pred -HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccc-cchHHHHHH
Confidence 34666667776664 778888887778777778888888888887662 334444443
No 59
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=52.06 E-value=2.3e+02 Score=29.42 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHHHHH
Q 004393 65 ESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNL 111 (756)
Q Consensus 65 ~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl 111 (756)
-+|.+|++.|++|++-+..++.-..+-..-|++| -+|+-=+..-.+|
T Consensus 117 LALKEARkEIkQLkQvieTmrssL~ekDkGiQKYFvDINiQN~KLEsL 164 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETMRSSLAEKDKGIQKYFVDINIQNKKLESL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHhhhhhhHhHHHHH
Confidence 3466666666666666666665555555555555 5554433333333
No 60
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=51.00 E-value=3.7e+02 Score=32.17 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 004393 55 EQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH 98 (756)
Q Consensus 55 ~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (756)
....++..-+.-+..++..+..|++.+.+|+........+|+.|
T Consensus 33 a~~~~~~qi~~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lIe~~ 76 (683)
T PF08580_consen 33 ALSGAAEQILDWIQKAKDVLYGLREGLEEIDSAISRFLDLIEVY 76 (683)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 33444445556667777777777777777777777666666655
No 61
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=50.99 E-value=5.4e+02 Score=31.38 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhHHHHHHH-hcCCCCcccccccCCCC--chhhHHHHHHHHHHH
Q 004393 333 FQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNL-IGLGVDESLAQVCSESG--AMDPLMNSYVERMQA 409 (756)
Q Consensus 333 ~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~~Y~~~l-~~l~i~~~~l~~ll~~~--~~~~L~~~Y~~~~~~ 409 (756)
...+...|+++-...|...|.....-+. -..+..|...||..+ ..++-+..+...+.++. .+-.|+-.=+..+.-
T Consensus 216 ~~~l~~~Y~~~r~~~l~~~W~~~~~~~~--~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~P 293 (766)
T PF10191_consen 216 EPQLEQYYCKCRKAPLQRLWQEYCQSDQ--SQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQP 293 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCc
Confidence 4556778888888899988852111111 177889998888744 33332333332222221 222344444444555
Q ss_pred HHHHHHHHHHh
Q 004393 410 TTKKWYLNILD 420 (756)
Q Consensus 410 ~l~ewl~~~l~ 420 (756)
.+..++..+++
T Consensus 294 S~~~~l~~al~ 304 (766)
T PF10191_consen 294 SFPSRLSSALK 304 (766)
T ss_pred cHHHHHHHHHh
Confidence 56666666663
No 62
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=49.54 E-value=37 Score=24.34 Aligned_cols=27 Identities=11% Similarity=0.284 Sum_probs=21.6
Q ss_pred HHHHHHhhCCCCCHHHHHHHHH-hcCCC
Q 004393 680 IYTNILEHQPDCPPEVVERLVA-LRDGI 706 (756)
Q Consensus 680 ~~~~l~~~~pD~s~~~v~~iL~-~R~Dl 706 (756)
.+..|...||+++...|+.+|. ..||+
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~g~v 32 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANNGNV 32 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCH
Confidence 4566778899999999999999 44454
No 63
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=47.61 E-value=2.1e+02 Score=27.76 Aligned_cols=96 Identities=20% Similarity=0.189 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHhHHhhhchHHHHHH
Q 004393 29 QFIGDMKADYIARQQANDSQLSTMVAEQI-EQAQTGLESLALSEQMISQLREN---FISIERYCQECQTLIENHDQIKLL 104 (756)
Q Consensus 29 ~kl~~~~~~~~~~~~~id~~Lk~~v~~ql-~~~~~gl~~L~~a~~~v~~l~~~---~~~i~~~~~~~~~~v~~~~~Ik~l 104 (756)
+-++.++++-..+...+|++|+..-.... ++++.|+..+.+=.-.++++... ...+...|..+...++-.=.+=++
T Consensus 3 ~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv 82 (177)
T PF10602_consen 3 EWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRV 82 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 34788889999999999999998754444 56677777777777766666655 444556666666666655555556
Q ss_pred HHHHHHHHHHHHHHHhhhcH
Q 004393 105 SNARNNLSTTLKDVEGMMSI 124 (756)
Q Consensus 105 ~~~~~nl~~~~~~l~~l~~~ 124 (756)
....+|...+.+.+.....+
T Consensus 83 ~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 83 AIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 66777776665555544443
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.18 E-value=2.8e+02 Score=27.00 Aligned_cols=31 Identities=3% Similarity=0.089 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHH
Q 004393 29 QFIGDMKADYIARQQANDSQLSTMVAEQIEQA 60 (756)
Q Consensus 29 ~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~ 60 (756)
....+...++.++....+.++.+. +++++..
T Consensus 84 ~~~~~~l~~l~~el~~l~~~~~~~-~~~l~~~ 114 (191)
T PF04156_consen 84 SELQQQLQQLQEELDQLQERIQEL-ESELEKL 114 (191)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 334444444555555544444443 3334333
No 65
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=46.39 E-value=4e+02 Score=28.78 Aligned_cols=53 Identities=11% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004393 38 YIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQE 90 (756)
Q Consensus 38 ~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~ 90 (756)
+.++.+++..+.....++--+-....-..+-++.+.+..+...+.++......
T Consensus 12 L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~ 64 (338)
T PF04124_consen 12 LFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDS 64 (338)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44588888888888766655666666666788888888888888766654443
No 66
>PRK02224 chromosome segregation protein; Provisional
Probab=46.24 E-value=6.7e+02 Score=31.05 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004393 65 ESLALSEQMISQLRENFISIERYCQEC 91 (756)
Q Consensus 65 ~~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (756)
..|...+..+.++...+..........
T Consensus 206 ~~l~~~~~~l~el~~~i~~~~~~~~~l 232 (880)
T PRK02224 206 ERLNGLESELAELDEEIERYEEQREQA 232 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444443
No 67
>PF02650 HTH_WhiA: WhiA C-terminal HTH domain; InterPro: IPR023054 This domain is found at the C terminus of the sporulation regulator WhiA. It is predicted to form a DNA binding helix-turn-helix structure []. ; PDB: 3HYI_A.
Probab=45.22 E-value=86 Score=26.54 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=38.3
Q ss_pred hHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHHHHHHHHH
Q 004393 659 VRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVLQECKEIY 722 (756)
Q Consensus 659 ~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l~~~~~~~ 722 (756)
...+..|.+-..++..+.-..++..+.-.|||.|...+..++.- .++|+..+.-+..++.++
T Consensus 23 i~~I~~i~~~~~~~~l~~~l~~~a~lRl~~Pd~SL~EL~~~~~~--~iSKSgvnhrlrKl~~ia 84 (85)
T PF02650_consen 23 IEAIEFIEENNGLDKLPEKLREFAELRLENPDASLKELGELLEP--PISKSGVNHRLRKLKKIA 84 (85)
T ss_dssp HHHHHHHHHHT-GGGS-HHHHHHHHHHHH-TTS-HHHHHHTT----T--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHCccccHHHHHHHHcC--cCcHHHHHHHHHHHHHHh
Confidence 34444444444433333444577788889999999999999886 599999999888777654
No 68
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=44.20 E-value=2.1e+02 Score=27.02 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHhHHhhhchHHHH
Q 004393 24 LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMIS-QLRENFISIERYCQECQTLIENHDQIK 102 (756)
Q Consensus 24 ~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~-~l~~~~~~i~~~~~~~~~~v~~~~~Ik 102 (756)
+|.=|..|+.--+++......+=..|+..+++=-.-+-..++-..++-..+. .+-.++..+..+...++.+-+.+..+.
T Consensus 50 d~~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v~ 129 (149)
T PF10157_consen 50 DPAVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPVY 129 (149)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777667777776666667777666544444344444444433333 233445555555566666666666666
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 004393 103 LLSNARNNLSTTLKDVEG 120 (756)
Q Consensus 103 ~l~~~~~nl~~~~~~l~~ 120 (756)
.+..--+.+..+++.++.
T Consensus 130 ~La~qIK~Ik~~lD~lE~ 147 (149)
T PF10157_consen 130 KLAQQIKDIKKLLDLLES 147 (149)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666655555554
No 69
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.21 E-value=4e+02 Score=27.61 Aligned_cols=122 Identities=11% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHH
Q 004393 31 IGDMKAD-YIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMI-SQLRENFISIERYCQECQTLIENH-DQIKLLSNA 107 (756)
Q Consensus 31 l~~~~~~-~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v-~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~ 107 (756)
|..+|.| +...+...+.+++.+ +.=|+.++.-......--..+ ..|+..+.+......+.+..+.+- ..+++....
T Consensus 136 L~emr~r~f~~~~~~Ae~El~~A-~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~l 214 (264)
T PF06008_consen 136 LEEMRKRDFTPQRQNAEDELKEA-EDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDL 214 (264)
T ss_pred HHHHHhccchhHHHHHHHHHHHH-HHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH-HhhhcHhHHHHHHHhhccCChhHH-HHHHHHHHHHh
Q 004393 108 RNNLSTTLKDV-EGMMSISVEAAEAKDSLGDDKELI-NTYERLTALDG 153 (756)
Q Consensus 108 ~~nl~~~~~~l-~~l~~~~~~~~~~~~~l~~~~~Ll-~ah~~L~~Le~ 153 (756)
.+.-...++.+ +....+.+....+...|.++..+| .+...|..+.+
T Consensus 215 n~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~~~~~ 262 (264)
T PF06008_consen 215 NRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQEMQD 262 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 70
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=42.14 E-value=1e+03 Score=31.94 Aligned_cols=126 Identities=17% Similarity=0.269 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHH-
Q 004393 54 AEQIEQAQTGLESLALSE--------------QMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDV- 118 (756)
Q Consensus 54 ~~ql~~~~~gl~~L~~a~--------------~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l- 118 (756)
|+|++.--.|+..|..-+ ..+.+|...|.+=...+ .|+.+-++|.++.-|...-+-|..-.+++
T Consensus 1667 Q~qldkly~~Lk~LA~eRr~~Lee~l~L~el~RE~dDLeqWIae~e~vA-gS~elGqD~EHv~~Lq~KF~eFa~~te~iG 1745 (2473)
T KOG0517|consen 1667 QSQLDKLYAGLKDLAEERRRRLEETLRLYELSREVDDLEQWIAEKEVVA-GSEELGQDFEHVTLLQEKFREFARDTEAIG 1745 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cChhhcCChHHHHHHHHHHHHHHHHHhhhh
Confidence 566666666666665443 33444444444433333 68888899999998887777776544433
Q ss_pred -HhhhcHhHHHHHHHhhccCC-----------hhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHhhcHHHHHHHH
Q 004393 119 -EGMMSISVEAAEAKDSLGDD-----------KELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETF 186 (756)
Q Consensus 119 -~~l~~~~~~~~~~~~~l~~~-----------~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~l~~~F~~v~~l~~~f 186 (756)
++.-..+..++ .+|..| ..|-+|+..|-+|-+.|...|+.+ .+|.++|.++.++....
T Consensus 1746 ~eRv~~~n~la~---~LI~~ghs~a~tvaewkd~LneaW~~LlELi~tR~q~Laas-------~elhrf~~D~~E~l~ri 1815 (2473)
T KOG0517|consen 1746 SERVAACNLLAD---ELIERGHSAAATVAEWKDGLNEAWADLLELIDTRGQKLAAS-------RELHRFHRDAREVLGRI 1815 (2473)
T ss_pred HHHHHHHHHHHH---HHHhcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHH
Confidence 44444443333 333333 368999999999999999888655 47888999988886655
Q ss_pred HHHH
Q 004393 187 EKTL 190 (756)
Q Consensus 187 ~~~l 190 (756)
...-
T Consensus 1816 qeK~ 1819 (2473)
T KOG0517|consen 1816 QEKQ 1819 (2473)
T ss_pred HHHH
Confidence 5443
No 71
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.02 E-value=3.5e+02 Score=33.58 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=68.6
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHH
Q 004393 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLES-LALSEQMISQLRENFISIERYCQECQTLIENH-DQIK 102 (756)
Q Consensus 25 p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~-L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik 102 (756)
++.++.|-..|.++..++..+.. +..--+++++-..|++. +..++.++..++..+..-+.-.+..++.+.++ +.|.
T Consensus 651 ek~~~~L~~~k~rl~eel~ei~~--~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 651 EKEVDQLKEKKERLLEELKEIQK--RRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence 44567777888888888888888 44445666777777777 88888888888877777776667777777888 8888
Q ss_pred HHHHHHHHHHHHHHHH
Q 004393 103 LLSNARNNLSTTLKDV 118 (756)
Q Consensus 103 ~l~~~~~nl~~~~~~l 118 (756)
.+-.--.|...++..|
T Consensus 729 ~i~r~l~~~e~~~~~L 744 (1141)
T KOG0018|consen 729 EIKRKLQNREGEMKEL 744 (1141)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666655
No 72
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=41.00 E-value=3.8e+02 Score=26.79 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhh
Q 004393 99 DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAE 163 (756)
Q Consensus 99 ~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~ 163 (756)
.-.+.++.+.++|..++..+.+-.. .+. .+.+.+.=.+.|-.--..|++++++|..++.+++
T Consensus 30 ~A~k~~~~a~~~Fa~sL~~f~~~~~-gd~--~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~qa~ 91 (207)
T cd07636 30 AALKNLSSAKRKFADSLNEFKFQCI-GDA--ETDDEICIARSLQEFAAVLRNLEDERTRMIENAS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-CCc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888999888777764322 110 0000000002244444467888888877666654
No 73
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=38.84 E-value=7.5e+02 Score=29.52 Aligned_cols=126 Identities=15% Similarity=0.161 Sum_probs=67.6
Q ss_pred hHHHh-hhccccccCcc-hhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccc---cccHHHHHHH
Q 004393 561 EQLLV-KLYQKEWSDGQ-VTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKN---YIRELTIERL 635 (756)
Q Consensus 561 ~p~~~-~lft~~W~~~~-~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~---~~~~~~a~~i 635 (756)
.|.++ .+|--.|..++ .++.-+.-+-+|+.---..++.++...=...++.....--++.+..+-. -....+-.++
T Consensus 790 ~~~~~K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~~Nf~Rvl~a~w~~vl~~l~~~~g~n~d~~~~Fy~Rl 869 (1103)
T KOG1328|consen 790 LPQMKKHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLHRNFLRVLSAQWSIVLKLLRECVGENVDMEPAFYHRL 869 (1103)
T ss_pred hHHHHHHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccCCCChHHHHHH
Confidence 34443 35677898765 3777777777787433323554443322222333233333333333311 1256788899
Q ss_pred HhHHHHHHHHHHcccchhh---h-hhhhHhHHHHHHhhccCChhhHHHHHHHHHh
Q 004393 636 RVDEEVITDFFREYISINK---V-ENRVRILTDLRELASANSVDAFALIYTNILE 686 (756)
Q Consensus 636 ~~D~~~l~~~F~~l~s~~~---v-~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~ 686 (756)
-.-.+.|.+||..=+.+-. + +..+..|..++.+=+......|-..|..+++
T Consensus 870 ~eal~~Lv~FFHAeGqGL~le~L~t~~~~rl~~~L~lhkt~T~~lIe~fY~d~Lk 924 (1103)
T KOG1328|consen 870 FEALHVLVEFFHAEGQGLSLEALDTNPEHRLVKILSLHKTPTEQLIEKFYKDLLK 924 (1103)
T ss_pred HHHHHHHHHHHhccCCCcchHhhccCcHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 9999999999985443211 1 2344556666666554333334445555443
No 74
>PF08649 DASH_Dad1: DASH complex subunit Dad1; InterPro: IPR013958 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules []. Throughout the cell cycle Dad1 remains bound to kinetochores and its association is dependent on the Mis6 and Mal2 [].
Probab=38.56 E-value=1.9e+02 Score=22.56 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhh
Q 004393 55 EQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLI 95 (756)
Q Consensus 55 ~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v 95 (756)
.-++.+-.+++.|......+..+-.++..|..++......+
T Consensus 16 ~~~e~vl~nlN~LNRsLE~~i~VGkEF~~V~~LW~~F~~~m 56 (58)
T PF08649_consen 16 ESMESVLNNLNALNRSLESVISVGKEFESVSSLWSQFYNGM 56 (58)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 34778888899999999999999999999999998766544
No 75
>PHA03332 membrane glycoprotein; Provisional
Probab=38.46 E-value=5.4e+02 Score=31.93 Aligned_cols=42 Identities=7% Similarity=0.102 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 004393 57 IEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH 98 (756)
Q Consensus 57 l~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (756)
|+.+...+++|-.+.+++.+++..|....+.-.+....+.++
T Consensus 876 L~va~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~kl 917 (1328)
T PHA03332 876 LAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKL 917 (1328)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455555555555555555555544444443333333
No 76
>TIGR03060 PS_II_psb29 photosystem II biogenesis protein Psp29. Psp29, originally designated sll1414 in Synechocystis 6803, is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.
Probab=38.10 E-value=4.3e+02 Score=26.55 Aligned_cols=114 Identities=14% Similarity=0.136 Sum_probs=75.8
Q ss_pred hHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHhHHHHHHHHHHcccchhhh
Q 004393 578 TEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYI--RELTIERLRVDEEVITDFFREYISINKV 655 (756)
Q Consensus 578 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~--~~~~a~~i~~D~~~l~~~F~~l~s~~~v 655 (756)
..|+.+|-+.|+..|. +.-|+.|+.++++++-+. .|+.-..-+ .+.+|=-+ +..+..|+.+|++.++
T Consensus 4 ~~TVSDtKr~F~~~~p-~pI~siYrrvv~ELLVEl------HLl~~n~~F~yDplfAlGl---vt~fd~fm~GY~Pee~- 72 (214)
T TIGR03060 4 RRTVSDSKRAFHAAFP-RVIPPLYRRVVDELLVEL------HLLSHQSDFKYDPLFALGL---VTVFDRFMEGYRPEEH- 72 (214)
T ss_pred CCcHHHHHHHHHHhCC-CCCchHHHHHHHHHHHHH------HHHHhccCceeCchHHhhH---HHHHHHHHcCCCChHH-
Confidence 4567788888998888 688899999999877653 333322212 34444444 3556677778877663
Q ss_pred hhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 004393 656 ENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDG 705 (756)
Q Consensus 656 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~D 705 (756)
.-.+++.+..=++. ||..+..+-..+.......+.+.+...|.-.++
T Consensus 73 --~~~IF~Alc~a~~~-dp~~~r~dA~~l~~~a~~~s~~~i~~~l~~~~~ 119 (214)
T TIGR03060 73 --LDALFDALCNSNGF-DPEQLREDAKQLLEQAKGKGLDEILSWLTQANL 119 (214)
T ss_pred --HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Confidence 34566666666563 667887777777666677778888777776653
No 77
>PLN02939 transferase, transferring glycosyl groups
Probab=38.10 E-value=9e+02 Score=30.23 Aligned_cols=43 Identities=23% Similarity=0.323 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcCCCCchh-hHHHHHHHHHHHHhhHHHHHhHHHH
Q 004393 8 VEAKEAAVREVAKLLTLPDQLQ-FIGDMKADYIARQQANDSQLSTMVA 54 (756)
Q Consensus 8 ~~a~~~a~~~v~~ll~~p~~L~-kl~~~~~~~~~~~~~id~~Lk~~v~ 54 (756)
..||..|+..+..+|..-+.|. +|.-+. -+.+..|+++|.++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 191 (977)
T PLN02939 148 NQARLQALEDLEKILTEKEALQGKINILE----MRLSETDARIKLAAQ 191 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHhhhhhhhhhhhhh
Confidence 3688888888888877776664 355533 334445555555554
No 78
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.87 E-value=3.8e+02 Score=25.89 Aligned_cols=41 Identities=5% Similarity=0.143 Sum_probs=23.0
Q ss_pred HHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 004393 81 FISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGM 121 (756)
Q Consensus 81 ~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l 121 (756)
+...-.+..+++..-+.++.+++|...-|.+-.++++++.+
T Consensus 181 IK~~Y~lLAk~EEi~ksm~pv~~La~qir~irRlve~lesl 221 (222)
T KOG4514|consen 181 IKCQYQLLAKAEEITKSMKPVEQLAQQIRQIRRLVEMLESL 221 (222)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33344455556666666666666666666665555555443
No 79
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=37.86 E-value=1.1e+02 Score=25.16 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004393 57 IEQAQTGLESLALSEQMISQLRE 79 (756)
Q Consensus 57 l~~~~~gl~~L~~a~~~v~~l~~ 79 (756)
+++.+..+..|+....+|.++-+
T Consensus 20 VdaLq~~V~~l~~~~~~v~~l~~ 42 (75)
T PF05531_consen 20 VDALQTQVDDLESNLPDVTELNK 42 (75)
T ss_pred HHHHHHHHHHHHhcCCchHHHHH
Confidence 33333333333333333333333
No 80
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.71 E-value=7.4e+02 Score=29.16 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Q 004393 31 IGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLA 68 (756)
Q Consensus 31 l~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~ 68 (756)
......+-.++..+++.+|... .++++.....+..+.
T Consensus 319 ~~~~~~~~~~el~~l~~~l~~l-~~~i~~~~~~~~~l~ 355 (594)
T PF05667_consen 319 EEDEQEEQEQELEELQEQLDEL-ESQIEELEAEIKMLK 355 (594)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4444455566666666665553 555555555554444
No 81
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=36.95 E-value=2.4e+02 Score=29.47 Aligned_cols=113 Identities=12% Similarity=0.091 Sum_probs=76.0
Q ss_pred hhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHhHHHHHHHHHHcccchhh
Q 004393 577 VTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYI--RELTIERLRVDEEVITDFFREYISINK 654 (756)
Q Consensus 577 ~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~--~~~~a~~i~~D~~~l~~~F~~l~s~~~ 654 (756)
...++.+|-+.|+..|. +.-|+.|+.++++++-+. .|+.-..-+ .+.+|=-+ +..+..|+..|++.++
T Consensus 54 ~~~TVSDTKr~F~~~yp-~pIpsiYrrvvdELLVEl------HLLs~n~~F~yDplFALGl---Vtvfd~fm~GY~Pee~ 123 (283)
T PLN00047 54 VPPTVAETKAKFLKSYK-RPIPSIYSTVLQELLVQQ------HLMRYKKTYRYDPVFALGF---VTVYDQLMEGYPSDED 123 (283)
T ss_pred CCCcHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHHH------HHHHhccCceeCchhhhhh---HHHHHHHHccCCChHH
Confidence 46678888888999888 688899999999887653 344322212 34444444 3566677788887764
Q ss_pred hhhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 004393 655 VENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALR 703 (756)
Q Consensus 655 v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R 703 (756)
.-.+++.+..=++. ||+.+..+-..+.......+.+.+...+...
T Consensus 124 ---~~~IF~Alc~a~g~-Dp~qyr~dA~~l~~~A~~~s~~~l~~~l~~~ 168 (283)
T PLN00047 124 ---RDAIFKAYIKALGE-DPEQYRKDAAKLEEWARSQTGSSLVDFSSKE 168 (283)
T ss_pred ---HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHhcc
Confidence 34566667766664 6788877777776666677777777776654
No 82
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=36.85 E-value=1.9e+02 Score=25.61 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=21.8
Q ss_pred HHhHHhhhch-HHHHHHHHHHHHHHH-HHHHHHhhh
Q 004393 89 QECQTLIENH-DQIKLLSNARNNLST-TLKDVEGMM 122 (756)
Q Consensus 89 ~~~~~~v~~~-~~Ik~l~~~~~nl~~-~~~~l~~l~ 122 (756)
.+++...+.+ ..++.=.|++..++. +++.|++|+
T Consensus 74 ~~~e~~~e~ik~~lk~d~Ca~~~~P~~V~d~L~~~~ 109 (110)
T PF10828_consen 74 QQSEERRESIKTALKDDPCANTAVPDAVIDSLRRLH 109 (110)
T ss_pred HHHHHHHHHHHHHHccCccccCCCCHHHHHHHHHhh
Confidence 3445555566 446666788888875 556677765
No 83
>PHA03332 membrane glycoprotein; Provisional
Probab=36.44 E-value=9.5e+02 Score=30.01 Aligned_cols=85 Identities=13% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHhHHhHHhhhch-HHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChh
Q 004393 65 ESLALSEQMISQLRENFI---SIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKE 140 (756)
Q Consensus 65 ~~L~~a~~~v~~l~~~~~---~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~ 140 (756)
++|.-+...++++-++-. ++++.......-|++. ..|.++...--+++.+ .=++|..++.++.+.++.+.. +
T Consensus 874 QAL~va~~~~~~llqnaaaia~mksaIg~tNaAV~~lsDai~klGnti~kisat--l~~nI~avNgRIs~Led~VN~--r 949 (1328)
T PHA03332 874 QALAVATLYVNQLLQATAATAEMASKIGGLNARVDKTSDVITKLGDTIAKISAT--LDNNIRAVNGRVSDLEDQVNL--R 949 (1328)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHhhHHHhcccHHHHHHHHHH--H
Confidence 334445555555555544 4444444444444444 3344554444444432 225666667677655555543 3
Q ss_pred HHHHHHHHHHHHh
Q 004393 141 LINTYERLTALDG 153 (756)
Q Consensus 141 Ll~ah~~L~~Le~ 153 (756)
++..-..+..|..
T Consensus 950 ~~~v~~~intLA~ 962 (1328)
T PHA03332 950 FLAVATNFNTLAT 962 (1328)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 84
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=36.31 E-value=6.3e+02 Score=27.90 Aligned_cols=18 Identities=17% Similarity=0.324 Sum_probs=7.8
Q ss_pred HHhhcHHHHHHHHHHHHH
Q 004393 174 EYFEDVDQIWETFEKTLW 191 (756)
Q Consensus 174 ~~F~~v~~l~~~f~~~l~ 191 (756)
.+=..|..+-..|...+-
T Consensus 354 ~~~~~L~~ve~~~~~N~~ 371 (388)
T PF04912_consen 354 KWEELLNKVEEKFKENME 371 (388)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 85
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=35.77 E-value=3.6e+02 Score=24.89 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 004393 105 SNARNNLSTTLKDVEGM 121 (756)
Q Consensus 105 ~~~~~nl~~~~~~l~~l 121 (756)
+..+.+|..++..++.|
T Consensus 97 ~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 97 SRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 86
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.56 E-value=4.6e+02 Score=26.10 Aligned_cols=82 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHH
Q 004393 67 LALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYE 146 (756)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~ 146 (756)
+...-.+|.++...+.++-+.|...- .--+..+.+.++|..++..+..... . +.... +-|..--.
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~------~agk~~~~a~~~F~~~L~~f~~~~~-~-------D~~i~-~~l~kFs~ 68 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGML------EGGRHYCAASRAFVDGLCDLAHHGP-K-------DPMMA-ECLEKFSD 68 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhccCC-C-------CchhH-HHHHHHHH
Confidence 34445666667777777666666422 3345677888888777776655211 0 00111 11333334
Q ss_pred HHHHHHhhHHHHHHHhh
Q 004393 147 RLTALDGKRRFALAAAE 163 (756)
Q Consensus 147 ~L~~Le~~Rd~~l~~~~ 163 (756)
-|.++++.|..++.+++
T Consensus 69 ~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 69 GLNHILDSHAELLEATQ 85 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46777777776666553
No 87
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=34.55 E-value=3e+02 Score=24.25 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=38.3
Q ss_pred HHHHHHHHhhHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 35 KADYIARQQANDS-----QLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIER 86 (756)
Q Consensus 35 ~~~~~~~~~~id~-----~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~ 86 (756)
-.++..|++.+++ .+...+..|+++...-+..|.++-..|..+-.+-..|-.
T Consensus 3 ~~ri~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r 59 (103)
T PF08654_consen 3 QARIAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFR 59 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHH
Confidence 3566667777765 556667788888888888888888888888877665543
No 88
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=33.84 E-value=4.1e+02 Score=25.07 Aligned_cols=13 Identities=15% Similarity=0.659 Sum_probs=6.1
Q ss_pred HHHHhHHhHHhhh
Q 004393 84 IERYCQECQTLIE 96 (756)
Q Consensus 84 i~~~~~~~~~~v~ 96 (756)
++..|......|+
T Consensus 97 v~~~cdsvD~sik 109 (149)
T PF10157_consen 97 VDKLCDSVDASIK 109 (149)
T ss_pred HHHHHHHHHHHHH
Confidence 4455554444443
No 89
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.29 E-value=4.1e+02 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhHHhHHhhhchHHHH-HHHHHHHHHHHHHHHHHhhhc
Q 004393 76 QLRENFISIERYCQECQTLIENHDQIK-LLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 76 ~l~~~~~~i~~~~~~~~~~v~~~~~Ik-~l~~~~~nl~~~~~~l~~l~~ 123 (756)
+++..+..-....+.++++-+++..+- ++..+..+|..|.+.|...-.
T Consensus 60 ~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 60 EAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444443333 366666667666655554433
No 90
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.85 E-value=9.5e+02 Score=28.33 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 004393 32 GDMKADYIARQQANDS-QLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH 98 (756)
Q Consensus 32 ~~~~~~~~~~~~~id~-~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (756)
+++..++.|+..++|+ .+.+.+.| =..|..-++.|..|.+.|..+.+.+..-+.......+.++.+
T Consensus 192 eaFaE~L~reLq~LdgANiqsilaS-E~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~I 258 (867)
T KOG2148|consen 192 EAFAERLKRELQALDAANIQSILAS-EPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESI 258 (867)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889999988886 34433332 123445556666666666666666655555555444443333
No 91
>PF08362 TetR_C_3: YcdC-like protein, C-terminal region; InterPro: IPR013573 This entry represents the C-terminal domain found in the hypothetical transcriptional regulators RutR and YcdC (P75899 from SWISSPROT) from Escherichia coli. Both of these proteins are member of the TetR (tetracycline resistance) transcriptional regulator family of proteins. RutR negatively controls the transcription of the rut operon involved in pyrimidine utilization. The C-terminal domains of RutR, YsiA and TetR share a multi-helical, interlocking structure. These proteins also contain helix-turn-helix (HTH) DNA-binding domains.; GO: 0045892 negative regulation of transcription, DNA-dependent; PDB: 3LOC_B.
Probab=30.71 E-value=1.4e+02 Score=27.88 Aligned_cols=92 Identities=10% Similarity=0.183 Sum_probs=51.2
Q ss_pred cHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHH--HhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 004393 628 RELTIERLRVDEEVITDFFREYISINKVENRVRILTDLR--ELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDG 705 (756)
Q Consensus 628 ~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~--~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~D 705 (756)
++.++.-+...+..|..++.+.... .+.....+|+.-. +.+.--||..+...+|+..+.|-|++ -.++.++... .
T Consensus 43 Srlfa~Eii~Gap~L~~~l~~~l~~-~~~~~~~~I~~Wi~~G~i~~vdP~hL~f~IWa~TQ~YADf~-~Qi~~~~g~~-~ 119 (143)
T PF08362_consen 43 SRLFANEIIQGAPHLKDYLRERLRP-WVDRKVAVIERWIAQGKIAPVDPEHLFFMIWAMTQHYADFA-AQIRAVLGKS-E 119 (143)
T ss_dssp HHHHHHHHHTTSTTTHHHHHTHHHH-HHHHHHHHHHHHHHTTSS-S--HHHHHHHHHHHHHHHHHTH-HHHHHHHS---T
T ss_pred hHHHHHHHHcCchhhHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHhhhhhhhHH-HHHHHHhCCC-C
Confidence 3444444555555555555433211 1122333333322 22333477888889999999999974 4678887764 3
Q ss_pred CChHhHHHHHHHHHHHH
Q 004393 706 IPRKDAKEVLQECKEIY 722 (756)
Q Consensus 706 l~r~~~~~~l~~~~~~~ 722 (756)
++.++.....+.+-+++
T Consensus 120 ~~~~d~e~a~~~v~~li 136 (143)
T PF08362_consen 120 LSEEDFEQAAEFVTALI 136 (143)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 78888887777666553
No 92
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.46 E-value=8.9e+02 Score=27.87 Aligned_cols=30 Identities=13% Similarity=0.215 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhhHHHHHHH
Q 004393 7 GVEAKEAAVREVAKLLTLPDQLQFIGDMKAD 37 (756)
Q Consensus 7 ~~~a~~~a~~~v~~ll~~p~~L~kl~~~~~~ 37 (756)
..+++...+.+|..+|..|++ ..|......
T Consensus 94 ~~~~~~~~l~~le~~f~~~~~-~gl~~~l~~ 123 (507)
T PRK07739 94 YWETKADALSQMEDIMNEPSD-TGLNKVLDQ 123 (507)
T ss_pred hHHHHHHHHHHHHHHhCCCCc-chHHHHHHH
Confidence 456777888888889988775 334443333
No 93
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=30.08 E-value=6e+02 Score=27.40 Aligned_cols=64 Identities=17% Similarity=0.289 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccC
Q 004393 73 MISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGD 137 (756)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~ 137 (756)
.+..+.+....+..+...++ .+.+...+++++.-+..|..+....+.+....+.++.++.+|.+
T Consensus 8 kl~~~~~r~~el~~~L~~p~-v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~ 71 (363)
T COG0216 8 KLESLLERYEELEALLSDPE-VISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAE 71 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555556666655544 55777888999999999988888888888777777777777765
No 94
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=30.02 E-value=58 Score=23.11 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=21.4
Q ss_pred HHHHhhCCCCCHHHHHHHHH-hcCCCC
Q 004393 682 TNILEHQPDCPPEVVERLVA-LRDGIP 707 (756)
Q Consensus 682 ~~l~~~~pD~s~~~v~~iL~-~R~Dl~ 707 (756)
..|.+.||.-..+.++.||. |+||+=
T Consensus 6 diL~rvFP~~kr~~Le~iL~~C~GDvv 32 (39)
T PF03474_consen 6 DILTRVFPHQKRSVLELILQRCNGDVV 32 (39)
T ss_pred HHHHHHCCCCChHHHHHHHHHcCCcHH
Confidence 45678899999999999998 788763
No 95
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=29.88 E-value=5.3e+02 Score=25.08 Aligned_cols=99 Identities=10% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhHHhHHhhhchH
Q 004393 29 QFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMIS---------QLRENFISIERYCQECQTLIENHD 99 (756)
Q Consensus 29 ~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~---------~l~~~~~~i~~~~~~~~~~v~~~~ 99 (756)
+....+-..+.+|..-+. .|-..|+++.+.-+.-+..+..++..+. +..+.-..+......-...++.|+
T Consensus 34 ~a~s~I~~~l~rR~dli~-~Lv~~v~~y~~~E~~~l~~v~~~R~~~~~~~~~~~~~~~~~~~~~l~~al~~l~~~~e~yP 112 (186)
T PF04011_consen 34 EAWSNIDVQLQRRHDLIP-NLVEIVKSYAKHEKETLTKVTKARSQANNLSDSADIQEFQQAEAELSQALSRLLAVVENYP 112 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHH-TT-HHHHHHHHHHHHHHH---H--SHHHHHHHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHcCC
Q ss_pred HHHH-----------------HHHHHHHHHHHHHHH-HhhhcHhHHH
Q 004393 100 QIKL-----------------LSNARNNLSTTLKDV-EGMMSISVEA 128 (756)
Q Consensus 100 ~Ik~-----------------l~~~~~nl~~~~~~l-~~l~~~~~~~ 128 (756)
+++. +..+++.+..+.+.. ..+.++|..+
T Consensus 113 ~Lka~~~~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP~~l 159 (186)
T PF04011_consen 113 ELKADENFQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQFPTNL 159 (186)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
No 96
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.68 E-value=9.6e+02 Score=29.01 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 32 GDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISI 84 (756)
Q Consensus 32 ~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i 84 (756)
..+|.++..+...+..+|...|..+-.....-+..|...++.++.|++.-.++
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~L 598 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKL 598 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666665555555455555555555555554443333
No 97
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=29.35 E-value=9.7e+02 Score=27.99 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=70.0
Q ss_pred HHHHHHhhcCCCCchhhHHHHHHHHHH----HHhhHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 004393 14 AVREVAKLLTLPDQLQFIGDMKADYIA----RQQANDSQLSTMVAEQIEQ---------AQTGLESLALSEQMISQLREN 80 (756)
Q Consensus 14 a~~~v~~ll~~p~~L~kl~~~~~~~~~----~~~~id~~Lk~~v~~ql~~---------~~~gl~~L~~a~~~v~~l~~~ 80 (756)
-+.+|..|=-+.+++.+.+.++++... ....++..|..+ ..++++ ....-..|..+...+..|.+.
T Consensus 49 el~kvk~l~l~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~a-e~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~ 127 (569)
T PRK04778 49 ELEKVKKLNLTGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEA-EELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEE 127 (569)
T ss_pred HHHHHhcCCCCcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554477888888888877543 556666666555 222221 122223344455555555555
Q ss_pred HHHHHHHhHHhHHhh----hchHHHHH-HHHHHHHHHHHHHHH-HhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHh
Q 004393 81 FISIERYCQECQTLI----ENHDQIKL-LSNARNNLSTTLKDV-EGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (756)
Q Consensus 81 ~~~i~~~~~~~~~~v----~~~~~Ik~-l~~~~~nl~~~~~~l-~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~ 153 (756)
+.++...-.++...| ..|+.+|+ +..-.-.|+.++..| +.|-.+......-..+-..|. .+.|+..|..++.
T Consensus 128 l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd-~~~A~e~l~~l~~ 205 (569)
T PRK04778 128 LQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD-YVEAREILDQLEE 205 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 555554444443333 23333433 222233344555555 333334434444444444444 6777777777655
No 98
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=28.17 E-value=3.7e+02 Score=22.77 Aligned_cols=66 Identities=14% Similarity=0.175 Sum_probs=36.5
Q ss_pred CCCchhhHHHHHHHHHHHHhhHHHHHhHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 004393 24 LPDQLQFIGDMKADYIARQQANDSQLSTMV---AEQI----EQAQTGLESLALSEQMISQLRENFISIERYCQ 89 (756)
Q Consensus 24 ~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v---~~ql----~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~ 89 (756)
+|.|++++=..-.+...+..+...+|.... +..+ .....|...|.+.++++.-++..+..++....
T Consensus 9 d~~d~~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~ 81 (88)
T PF10241_consen 9 DPEDLDEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLA 81 (88)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677766666666666655555554432 2223 23344555566666666666666666555443
No 99
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=27.35 E-value=4.2e+02 Score=25.64 Aligned_cols=30 Identities=0% Similarity=0.090 Sum_probs=20.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHhH
Q 004393 22 LTLPDQLQFIGDMKADYIARQQANDSQLST 51 (756)
Q Consensus 22 l~~p~~L~kl~~~~~~~~~~~~~id~~Lk~ 51 (756)
||+-+|++++..+-..+..+...++.++-.
T Consensus 68 lPSr~DiarvA~lvinlE~kvD~lee~fdd 97 (189)
T TIGR02132 68 VPTKEDIANVASLVINLEEKVDLIEEFFDD 97 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777776655543
No 100
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.32 E-value=2e+02 Score=32.29 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=68.8
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHh-
Q 004393 20 KLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFIS-------IERYCQEC- 91 (756)
Q Consensus 20 ~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~-------i~~~~~~~- 91 (756)
..++++-.|+.|=+--..+.+++..+|+.+-+.|=.-.+.--.|-..+..-++++.++..+|.. |..+...-
T Consensus 40 dkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~ms~i~~~s~~l~ 119 (636)
T KOG2346|consen 40 DKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVMSSIQSKSDGLA 119 (636)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHHHHHhhhhcccc
Confidence 3456677777776667778889999999999998777666666666666666655555544433 33333222
Q ss_pred HHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHH
Q 004393 92 QTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAA 129 (756)
Q Consensus 92 ~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~ 129 (756)
..+.++-.+|+++...+.-+ ..+++++.+|..+.
T Consensus 120 g~L~ekre~I~kLg~~~~ll----rkvqfifdLP~rLr 153 (636)
T KOG2346|consen 120 GSLFEKRELIKKLGQRPPLL----RKVQFIFDLPRRLR 153 (636)
T ss_pred chhHHhHHHHHHhcCCccch----hhhHHHhhhHHHHH
Confidence 22333446777777766555 45788888887655
No 101
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.14 E-value=2.4e+02 Score=24.85 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=12.9
Q ss_pred hhcCCCCchhhHHHHHHHHHHHHhhHHHHHh
Q 004393 20 KLLTLPDQLQFIGDMKADYIARQQANDSQLS 50 (756)
Q Consensus 20 ~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk 50 (756)
.-+-.-++++++.+-..+..++...++++++
T Consensus 29 ~~~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 29 RTYAKREDIEKLEERLDEHDRRLQALETKLE 59 (106)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444443
No 102
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=27.10 E-value=8e+02 Score=26.92 Aligned_cols=61 Identities=11% Similarity=0.212 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhc
Q 004393 74 ISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSL 135 (756)
Q Consensus 74 v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l 135 (756)
+..+..++.++.....++ +...+-...+.+...+.++...++.++.+....+..+...+++
T Consensus 25 l~~~~~~~~~l~~~l~~p-~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell 85 (367)
T PRK00578 25 VDALKERLEELEAEAEDP-DFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELA 85 (367)
T ss_pred HHHHHHHHHHHHHHhcCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666555443 3344556677777788888777777777766555555444444
No 103
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=27.00 E-value=9.4e+02 Score=28.81 Aligned_cols=37 Identities=5% Similarity=0.092 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHH
Q 004393 67 LALSEQMISQLRENFISIERYCQECQTLIENHDQIKL 103 (756)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~ 103 (756)
++.|...+++|.+.|.+.+....++++.....+.|-+
T Consensus 222 v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgd 258 (966)
T KOG4286|consen 222 IDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGD 258 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHH
Confidence 4444555555666666666666666666666655554
No 104
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.88 E-value=1.1e+03 Score=27.79 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhhcCCC-CchhhHHHHHHHHHHHHhhHHHHHh
Q 004393 9 EAKEAAVREVAKLLTLP-DQLQFIGDMKADYIARQQANDSQLS 50 (756)
Q Consensus 9 ~a~~~a~~~v~~ll~~p-~~L~kl~~~~~~~~~~~~~id~~Lk 50 (756)
++.-...+++.+||++| ..++||..+...-..+...+..+--
T Consensus 376 e~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe 418 (594)
T PF05667_consen 376 EEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQWE 418 (594)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788899986 7788888888887777777765543
No 105
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=26.87 E-value=1.3e+03 Score=28.46 Aligned_cols=96 Identities=15% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHhhcC-CCCchhh-----HHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 004393 16 REVAKLLT-LPDQLQF-----IGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQ---MISQLRENFISIER 86 (756)
Q Consensus 16 ~~v~~ll~-~p~~L~k-----l~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~---~v~~l~~~~~~i~~ 86 (756)
+-+...+. .|+++.+ ...+..++......+..-|-..++.++++. ....|....+ ++++.+..|..++.
T Consensus 183 ~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~~--~~~~L~~i~~l~~~~~~~~~~L~~v~~ 260 (806)
T PF05478_consen 183 DDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLLGGDIQDQLGSN--VYPALDSILDLAQAMQETKELLQNVNS 260 (806)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443 2555544 334566667777777666666666666533 4444444444 66666666666666
Q ss_pred HhHHhHHhhhchHHHHHHHHHHHHHHHHH
Q 004393 87 YCQECQTLIENHDQIKLLSNARNNLSTTL 115 (756)
Q Consensus 87 ~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~ 115 (756)
...+.+.....+++ .++.+++++..++
T Consensus 261 ~~~~L~~~~~qL~~--~L~~vK~~L~~~l 287 (806)
T PF05478_consen 261 SLKDLQEYQSQLRD--GLRGVKRDLNNTL 287 (806)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 66655554444421 1444555555444
No 106
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.81 E-value=7.6e+02 Score=25.95 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=4.8
Q ss_pred HHHHHHHHHH
Q 004393 104 LSNARNNLST 113 (756)
Q Consensus 104 l~~~~~nl~~ 113 (756)
+..+..+++.
T Consensus 90 L~~~~~~~~~ 99 (291)
T PF10475_consen 90 LKSADENLTK 99 (291)
T ss_pred HHHHHHHhHH
Confidence 4445555444
No 107
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=26.70 E-value=33 Score=27.13 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=19.3
Q ss_pred HHHhhCCCCCHHHHHHHHHhcCCC
Q 004393 683 NILEHQPDCPPEVVERLVALRDGI 706 (756)
Q Consensus 683 ~l~~~~pD~s~~~v~~iL~~R~Dl 706 (756)
.|..++||.++..++.+.+.|+||
T Consensus 21 ~l~~k~P~at~~~l~~lve~RsdF 44 (68)
T PF09164_consen 21 RLRAKLPDATPTELKELVEKRSDF 44 (68)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHhhH
Confidence 566788999999999999999875
No 108
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=26.70 E-value=8.9e+02 Score=27.91 Aligned_cols=100 Identities=9% Similarity=0.120 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Q 004393 13 AAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQ 92 (756)
Q Consensus 13 ~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~ 92 (756)
+.+++|.+.+....+...++.--.++.++.++.=+..+..+.+--.....-......++..|.....-+.
T Consensus 16 ~~l~~v~Di~eq~~kf~~l~~h~~~~~~e~~~~ln~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr---------- 85 (742)
T COG5173 16 SDLQTVLDIIEQSTKFEALEHHDGNLSAEISKCLNNILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFR---------- 85 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----------
Confidence 4567788877776666777777888888888843433333332222222334445556666665554332
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004393 93 TLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 93 ~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (756)
+++.|+..+--..+|.|+...++...++-.
T Consensus 86 -~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied 115 (742)
T COG5173 86 -LVKDYRSVKMTCLAHSNLCNVVEFSDRIED 115 (742)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777778877776655555433
No 109
>PF11571 Med27: Mediator complex subunit 27; InterPro: IPR021627 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Mediator exists in two major forms in human cells: a smaller form that interacts strongly with pol II and activates transcription, and a large form that does not interact strongly with pol II and does not directly activate transcription. The ubiquitous expression of Med27 mRNA suggests a universal requirement for Med27 in transcriptional initiation. Loss of Crsp34/Med27 decreases amacrine cell number, but increases the number of rod photoreceptor cells [].
Probab=26.49 E-value=98 Score=26.41 Aligned_cols=49 Identities=16% Similarity=0.482 Sum_probs=36.5
Q ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHhhccCCCChhhHHHHhchhHHHHHH
Q 004393 322 VAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDN 376 (756)
Q Consensus 322 ~~~~fP~~~~I~~~~~~~yh~~l~~~L~~l~~~~~~l~~~~ll~ll~wv~~Y~~~ 376 (756)
+.+--|.+|+||+.....-+.++...+.. -.....+..+++|+..|.+.
T Consensus 4 ~~~~~~S~~~v~~~~t~~a~~al~~~~~~------~~~~~~l~~ll~~l~sY~~l 52 (90)
T PF11571_consen 4 VDPWSPSRYKVFRKITEHANTALLHFINS------RPPEWDLRSLLDWLSSYRNL 52 (90)
T ss_pred cccccchhhhhhhhhhHHHHHHHHHhhhc------CCCccHHHHHHHHHHHHhhh
Confidence 45566888999999998888886554432 24456799999999889764
No 110
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=26.21 E-value=1.2e+03 Score=28.15 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhHHHHHh
Q 004393 33 DMKADYIARQQANDSQLS 50 (756)
Q Consensus 33 ~~~~~~~~~~~~id~~Lk 50 (756)
.....+..+...++.++.
T Consensus 288 ~~i~~L~~~l~~l~~~~~ 305 (754)
T TIGR01005 288 DLIQRLRERQAELRATIA 305 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 111
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.75 E-value=1.1e+03 Score=27.29 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=8.5
Q ss_pred HHHHHHHHhhHHHHH
Q 004393 145 YERLTALDGKRRFAL 159 (756)
Q Consensus 145 h~~L~~Le~~Rd~~l 159 (756)
+..++.|.+.++++-
T Consensus 298 ~~~~~~l~d~i~~l~ 312 (562)
T PHA02562 298 PDRITKIKDKLKELQ 312 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666555443
No 112
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=25.74 E-value=2.9e+02 Score=20.80 Aligned_cols=49 Identities=6% Similarity=0.209 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISI 84 (756)
Q Consensus 28 L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i 84 (756)
+.+|+++-+++...--++|. -+.-...|+..+..++..+......+..|
T Consensus 5 ~~~Le~Iv~~Le~~~~sLde--------s~~lyeeg~~l~~~c~~~L~~~e~~i~~l 53 (53)
T PF02609_consen 5 MERLEEIVEKLESGELSLDE--------SLKLYEEGMELIKKCQERLEEAEQKIEEL 53 (53)
T ss_dssp HHHHHHHHHHHHTT-S-HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45666666666666555543 34455677888888888877777776543
No 113
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=25.66 E-value=6.2e+02 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 55 EQIEQAQTGLESLALSEQMISQLRENFISIER 86 (756)
Q Consensus 55 ~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~ 86 (756)
..|..++.++......+..|+.+.+.+.++.+
T Consensus 37 ~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~ 68 (174)
T PF07426_consen 37 DSLLSVQSALNSAASKRERIKELFKRIEELNK 68 (174)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44555555555555556666666555555543
No 114
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=24.55 E-value=1.3e+03 Score=28.02 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=8.6
Q ss_pred hHHHHHhHHHHHHHHH
Q 004393 578 TEYLTATFGDYFMDVK 593 (756)
Q Consensus 578 v~~i~~ti~dy~~d~~ 593 (756)
..+|..-+++|+.-++
T Consensus 741 ~~~~~~~~~~YI~wv~ 756 (865)
T KOG4331|consen 741 LRRIKGYISQYILWVQ 756 (865)
T ss_pred HHHHHhhHHHHHHHHH
Confidence 5556555555554443
No 115
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=24.47 E-value=4.7e+02 Score=22.67 Aligned_cols=66 Identities=9% Similarity=0.197 Sum_probs=36.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHHHHHHH
Q 004393 48 QLSTMVAEQIEQAQTGLESLAL----SEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLST 113 (756)
Q Consensus 48 ~Lk~~v~~ql~~~~~gl~~L~~----a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~ 113 (756)
.....|+++++++..-+..|+. +.....++......+...+..-......+ +.+++++.+-.+++.
T Consensus 7 ~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~ 77 (99)
T PF10046_consen 7 KVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTE 77 (99)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888777777653 23334455555555555555544444455 445555554444444
No 116
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=24.38 E-value=5.6e+02 Score=23.58 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHHHHHHHHHHHHHhhhc
Q 004393 72 QMISQLRENFISIERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 72 ~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (756)
+.++++...+..+-....+-+....+| ..|+++...+.++..+-..|+.+..
T Consensus 56 ~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~ 108 (131)
T PF10158_consen 56 KRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVP 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555556 6677777777777665554544443
No 117
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.35 E-value=7.2e+02 Score=24.81 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHH
Q 004393 67 LALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYE 146 (756)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~ 146 (756)
|+.=..+|.++...|.+|-+.|.. |+ .--|.++.|.+-|..++..+++-.. .+.. +.|.+.=+..|-.--.
T Consensus 4 l~~hE~ele~~~~~IkkliK~~~~---li---~a~K~~s~A~r~Fa~~L~df~f~~i-gd~~--tdde~~I~~sL~~F~~ 74 (207)
T cd07633 4 LKCYEQELERTNKFIKDVIKDGNA---LI---SAIKEYSSAVQKFSQTLQSFQFDFI-GDTL--TDDEINIAESFKEFAE 74 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHhhcC-CCcc--cchHHHHHHHHHHHHH
Confidence 333445666666666666666664 22 2346778888888877777765322 1110 0000000012444445
Q ss_pred HHHHHHhhHHHHHHHhh
Q 004393 147 RLTALDGKRRFALAAAE 163 (756)
Q Consensus 147 ~L~~Le~~Rd~~l~~~~ 163 (756)
.|++++++|..++.+++
T Consensus 75 ~L~~ie~~r~~l~d~aq 91 (207)
T cd07633 75 LLQEVEEERMMMVQNAS 91 (207)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888877776654
No 118
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=24.30 E-value=4.2e+02 Score=22.02 Aligned_cols=37 Identities=8% Similarity=0.230 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHHHHH
Q 004393 73 MISQLRENFISIERYCQECQTLIENH-DQIKLLSNARN 109 (756)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~~~~ 109 (756)
.++....+|..|...|..+..+...+ +.+.+....++
T Consensus 23 ~L~~a~~~~~~v~~~~~~t~~LLd~w~~IlSQte~~~~ 60 (78)
T PF08651_consen 23 TLRSAKSNMNRVQETVESTNTLLDKWIRILSQTEHTQR 60 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444477777777777777777777 55555444443
No 119
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=24.28 E-value=5.1e+02 Score=25.02 Aligned_cols=19 Identities=11% Similarity=0.078 Sum_probs=5.7
Q ss_pred HHHHHHhhHHHHHhHHHHH
Q 004393 37 DYIARQQANDSQLSTMVAE 55 (756)
Q Consensus 37 ~~~~~~~~id~~Lk~~v~~ 55 (756)
+++++.+.+-++|...|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~ 120 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQ 120 (171)
T ss_dssp --------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555443
No 120
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.12 E-value=7.9e+02 Score=25.18 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=46.4
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHH
Q 004393 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKL 103 (756)
Q Consensus 25 p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~ 103 (756)
..+++.+.....+ ......+....+..--+..+.-...+....+.+..+.............-+.-+.++ ..|..
T Consensus 20 a~~~~~~~~~~~~----~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 20 AATLDQAQQVQQQ----WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred hccHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555443333 333333333333333333434444455556666666666666666666666666666 66777
Q ss_pred HHHHHHHHHHHH
Q 004393 104 LSNARNNLSTTL 115 (756)
Q Consensus 104 l~~~~~nl~~~~ 115 (756)
+...++.+.-.+
T Consensus 96 ~~~~~~~l~p~m 107 (251)
T PF11932_consen 96 IEETRQELVPLM 107 (251)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 121
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=23.91 E-value=1.1e+03 Score=26.97 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=32.3
Q ss_pred CCchhhHHHHHHHHHHH-----HhhHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Q 004393 25 PDQLQFIGDMKADYIAR-----QQANDSQLSTMVAEQIEQAQTGLES--LALSEQMISQLRENFISIERYC 88 (756)
Q Consensus 25 p~~L~kl~~~~~~~~~~-----~~~id~~Lk~~v~~ql~~~~~gl~~--L~~a~~~v~~l~~~~~~i~~~~ 88 (756)
|++|.+|..=-+++..+ .-.||+++... +.|+.....-+.. |..|...++.|.++|..+-...
T Consensus 228 P~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L-~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~l 297 (570)
T COG4477 228 PGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERL-KEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLL 297 (570)
T ss_pred hHHHHHHHHHHHHHHHccCCcccccHHHHHHHH-HHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666655444433322 23444544443 4555555555554 4566666666666665554433
No 122
>PF00522 VPR: VPR/VPX protein; InterPro: IPR000012 Human immunodeficiency virus (HIV) is the human retrovirus associated with AIDS (acquired immune deficiency syndrome), and SIV its simian counterpart. Three main groups of primate lentivirus are known, designated Human immunodeficiency virus 1 (HIV-1), Human immunodeficiency virus 2 (HIV-2)/Simian immunodeficiency virus - mac (SIVMAC)/Simian immunodeficiency virus - sm (SIVSM) and Simian immunodeficiency virus - agm (SIVAGM). Simian immunodeficiency virus - mnd (SIVMND) has been suggested to represent a fourth distinct group []. These groups are believed to have diverged from a common ancestor long before the spread of AIDS in humans. Genetic variation in HIV-1 and HIV-2 has been studied extensively, and the nucleotide sequences reported for several strains []. ORF analysis has revealed two open reading frames, yielding the so-called R- and X-ORF proteins, which show a high degree of sequence similarity. Vpx plays a role in nuclear translocation of the viral pre-integration complex (PIC) and is thus required for the virus to infect non-dividing cells. Vpr also plays a role in nuclear translocation of the (PIC) and may target specific host proteins for degradation by the 26S proteasome. It acts by associating with the cellular CUL4A-DDB1 E3 ligase complex through direct interaction with host VPRPB/DCAF-1. This would result in cell cycle arrest or apoptosis in infected cells, creating a favourable environment for maximizing viral expression and production by rendering the HIV-1 LTR transcription more active.; GO: 0019058 viral infectious cycle, 0042025 host cell nucleus; PDB: 1VPC_A 1X9V_B 1ESX_A 1CEU_A 1M8L_A 1DSJ_A 1BDE_A 1DSK_A 1FI0_A.
Probab=23.82 E-value=63 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhhccccCCCcc--hHHHHHHHHHHH
Q 004393 310 TIGEELADIYDYVAPCFPPRY--EIFQLMVNLYTE 342 (756)
Q Consensus 310 ~~~~dL~~v~~~~~~~fP~~~--~I~~~~~~~yh~ 342 (756)
|+.+-|..++...+..||+.| .+.+.+...||.
T Consensus 21 Wl~~~Leelk~EAvrHFpr~~L~~lgq~i~e~~gD 55 (96)
T PF00522_consen 21 WLLELLEELKEEAVRHFPREWLFGLGQYIYETYGD 55 (96)
T ss_dssp HHHHHHHHHHHHHHHSTCCCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHhhHHhhccCc
Confidence 666667778888889999998 677776666644
No 123
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.49 E-value=1.6e+03 Score=28.55 Aligned_cols=18 Identities=11% Similarity=0.364 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHhhHH
Q 004393 139 KELINTYERLTALDGKRR 156 (756)
Q Consensus 139 ~~Ll~ah~~L~~Le~~Rd 156 (756)
.|+-.+-..+.+|+.-..
T Consensus 935 ~~i~k~q~~l~~le~~~~ 952 (1293)
T KOG0996|consen 935 RNIAKAQKKLSELEREIE 952 (1293)
T ss_pred ccHHHHHHHHHHHHHHHH
Confidence 456666677777766444
No 124
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=23.32 E-value=1.2e+03 Score=26.92 Aligned_cols=68 Identities=12% Similarity=0.155 Sum_probs=31.9
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHH
Q 004393 38 YIARQQANDSQLSTMVAEQIEQAQTGLESL----ALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSN 106 (756)
Q Consensus 38 ~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L----~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~ 106 (756)
..|...-.+..|+..+..-.+.. .++.-| ..++..|+.|.+.|.-|...+.....--+.+.-|.+-+.
T Consensus 218 ~eR~RdlaEeNl~kEi~~~~~~l-~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~~rvss~AE~lGAv~QE~R 289 (538)
T PF05781_consen 218 EERSRDLAEENLKKEIENCLKLL-ESLAPLCWEDNESREIIQKLQKSLDVLHQCATRVSSRAEMLGAVHQESR 289 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 34444444555555544433333 223333 345566666666666555555544443344444444333
No 125
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=22.65 E-value=3.7e+02 Score=20.78 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=21.6
Q ss_pred HHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 38 YIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLR 78 (756)
Q Consensus 38 ~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~ 78 (756)
+..+..++++.+.+ ++++.+..+..++.+...-+++-.|-
T Consensus 5 lEn~~~~~~~~i~t-vk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 5 LENELPRIESSINT-VKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555443 36666666666555555544444443
No 126
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=22.58 E-value=2e+02 Score=30.56 Aligned_cols=110 Identities=11% Similarity=0.057 Sum_probs=59.0
Q ss_pred HHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhH----HHHHHHhhccCChhHHHHHHHHHHHHhhHHHHH
Q 004393 84 IERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISV----EAAEAKDSLGDDKELINTYERLTALDGKRRFAL 159 (756)
Q Consensus 84 i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~----~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l 159 (756)
|-..|.+.+....+..-.+....+-.++...++..+....+|. .+++.++.|..| .|.+|+.+|.+-.
T Consensus 21 iLa~~~ev~g~~~r~~~y~~Aasvlk~~p~~I~S~~ea~~lP~iG~kia~ki~EiletG--------~l~ele~v~~de~ 92 (353)
T KOG2534|consen 21 ILAEAYEVEGEEDRARAYRRAASVLKSLPFPITSGEEAEKLPGIGPKIAEKIQEILETG--------VLRELEAVRNDER 92 (353)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHHhCCCCcccHHHhcCCCCCCHHHHHHHHHHHHcC--------CchhHHHHhcchh
Confidence 3334444444444555556666666777766777777777765 444455566666 6788888875211
Q ss_pred HHhhhchHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhH
Q 004393 160 AAAESHKEEVGRLREYFEDVDQIWETFEKTLWGYISNFYKLSKESPQTLVRA 211 (756)
Q Consensus 160 ~~~~~~~~~~~~l~~~F~~v~~l~~~f~~~l~~~~~~~l~~~~~~p~~lv~~ 211 (756)
....++|..+-.+--.-.+.-..---++++-+|++|.-+++-
T Consensus 93 ----------~~~lklFtnifGvG~ktA~~Wy~~GfrTled~Rk~~~kft~q 134 (353)
T KOG2534|consen 93 ----------SQSLKLFTNIFGVGLKTAEKWYREGFRTLEDVRKKPDKFTRQ 134 (353)
T ss_pred ----------HHHHHHHHHHhccCHHHHHHHHHhhhhHHHHHHhCHHHHHHH
Confidence 122335555444332222222222335566666666555543
No 127
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.56 E-value=1.3e+03 Score=27.31 Aligned_cols=144 Identities=14% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhc-CCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 9 EAKEAAVREVAKLL-TLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERY 87 (756)
Q Consensus 9 ~a~~~a~~~v~~ll-~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~ 87 (756)
.........++.+. .....+..+-.-..++..+...++.+|...-.. +.+..-.+.+..+.+.+.++...+......
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~--e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~ 450 (650)
T TIGR03185 373 SELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSE--EQIAQLLEELGEAQNELFRSEAEIEELLRQ 450 (650)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHhHHhhhch-HHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHhhHHHHHHHhhhch
Q 004393 88 CQECQTLIENH-DQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDGKRRFALAAAESHK 166 (756)
Q Consensus 88 ~~~~~~~v~~~-~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~ 166 (756)
.......+..+ ..|+++.....+.......++.... -...|..++..+.......-
T Consensus 451 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~l~~~~~~~l 507 (650)
T TIGR03185 451 LETLKEAIEALRKTLDEKTKQKINAFELERAITIADK-----------------------AKKTLKEFREKLLERKLQQL 507 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhcH
Q 004393 167 EEVGRLREYFEDV 179 (756)
Q Consensus 167 ~~~~~l~~~F~~v 179 (756)
+ ..+..+|+.+
T Consensus 508 e--~~~~~~f~~l 518 (650)
T TIGR03185 508 E--EEITKSFKKL 518 (650)
T ss_pred H--HHHHHHHHHH
No 128
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=22.17 E-value=1.1e+03 Score=26.01 Aligned_cols=23 Identities=9% Similarity=0.138 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 004393 99 DQIKLLSNARNNLSTTLKDVEGM 121 (756)
Q Consensus 99 ~~Ik~l~~~~~nl~~~~~~l~~l 121 (756)
..++.+...-.|+..+-..++.+
T Consensus 290 ~lL~Nle~lt~~LA~as~~l~~l 312 (370)
T PLN03094 290 GLLKEVEKLTRVAAEASEDLRRL 312 (370)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555665554544444
No 129
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.00 E-value=1.6e+03 Score=28.11 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch--HHHHHHHHHHHHHH
Q 004393 67 LALSEQMISQLRENFISIERYCQECQTLIENH--DQIKLLSNARNNLS 112 (756)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~--~~Ik~l~~~~~nl~ 112 (756)
+..++.++..+.+.+...+..-..++.++.+| ..-+.++..|.-+.
T Consensus 541 ~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~ 588 (1041)
T KOG0243|consen 541 LEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVA 588 (1041)
T ss_pred HHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHh
Confidence 56666666666666666666666667776666 22333444444443
No 130
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.95 E-value=1.2e+03 Score=26.38 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=83.3
Q ss_pred HHHHHHHhhcC--CCC----chhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 004393 13 AAVREVAKLLT--LPD----QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQT----GLESLALSEQMISQLRENFI 82 (756)
Q Consensus 13 ~a~~~v~~ll~--~p~----~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~----gl~~L~~a~~~v~~l~~~~~ 82 (756)
+|..|||.-.+ +|+ |=+..+.+.+.+..|..-.-..+...+..|..++-. +-.....-+.++-.+++.|.
T Consensus 12 da~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da~~Lq~kma 91 (828)
T KOG4182|consen 12 DAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADAHRLQEKMA 91 (828)
T ss_pred CHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHHHHHHHHHH
Confidence 46678888776 343 346677888888777777777777777777655422 22223334566667777777
Q ss_pred HHHHHhHHhHHhhhc-hHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHh
Q 004393 83 SIERYCQECQTLIEN-HDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (756)
Q Consensus 83 ~i~~~~~~~~~~v~~-~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~ 153 (756)
.|.......+.-..+ +..+-+++..+..+..+-+.|..-..+-....+.++-+..+. |-.|...|..|++
T Consensus 92 ~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gD-L~~aadkLaalqk 162 (828)
T KOG4182|consen 92 AILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGD-LKGAADKLAALQK 162 (828)
T ss_pred HHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC-chhHHHHHHHHHH
Confidence 766554444333333 356666777777777666666555444444444555554443 5556666665555
No 131
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=21.95 E-value=1.1e+03 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=8.6
Q ss_pred CCchh-hHHHHHHHHHHHHhhHHH
Q 004393 25 PDQLQ-FIGDMKADYIARQQANDS 47 (756)
Q Consensus 25 p~~L~-kl~~~~~~~~~~~~~id~ 47 (756)
-|||. -|+.+|+.+..+.....-
T Consensus 222 VdDLQD~VE~LRkDV~~RgvRp~~ 245 (424)
T PF03915_consen 222 VDDLQDLVEDLRKDVVQRGVRPSP 245 (424)
T ss_dssp HHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCH
Confidence 34443 255555555555444433
No 132
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.79 E-value=7.4e+02 Score=24.02 Aligned_cols=21 Identities=5% Similarity=0.034 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhHHHHHhH
Q 004393 31 IGDMKADYIARQQANDSQLST 51 (756)
Q Consensus 31 l~~~~~~~~~~~~~id~~Lk~ 51 (756)
|.-||+-+.+--..+|+.+|.
T Consensus 163 vq~yr~aV~kl~d~~DanIK~ 183 (222)
T KOG4514|consen 163 VQVYRNAVNKLTDTLDANIKC 183 (222)
T ss_pred HHHHHHHHHHHHHHhhhhhHH
Confidence 444444444444444444443
No 133
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.54 E-value=9.9e+02 Score=25.38 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=21.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHHH
Q 004393 169 VGRLREYFEDVDQIWETFEKTLWGYISNF 197 (756)
Q Consensus 169 ~~~l~~~F~~v~~l~~~f~~~l~~~~~~~ 197 (756)
..+|+..|-++..+++.=+..|-.|-.+.
T Consensus 215 i~ELhqlFlDMa~LVe~QgEmvd~IE~nV 243 (297)
T KOG0810|consen 215 IRELHQLFLDMAVLVESQGEMVDRIENNV 243 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46788889888888877777776664433
No 134
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=21.22 E-value=2.6e+02 Score=22.47 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=38.0
Q ss_pred CchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 26 DQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIER 86 (756)
Q Consensus 26 ~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~ 86 (756)
+.+++|+.+-+++...--+++.- +..-..|+..+..++..+.+....+..+..
T Consensus 5 e~l~~Le~Iv~~LE~~~l~Lees--------l~lyeeG~~L~k~c~~~L~~ae~kv~~l~~ 57 (67)
T TIGR01280 5 EALSELEQIVQKLESGDLALEEA--------LNLFERGMALARRCEKKLAQAEQRVRKLLK 57 (67)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667777777777777676443 445577888888888888888888777653
No 135
>PHA03386 P10 fibrous body protein; Provisional
Probab=21.18 E-value=5e+02 Score=22.27 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 54 AEQIEQAQTGLESLALSEQMISQLRENFISIER 86 (756)
Q Consensus 54 ~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~ 86 (756)
|.|+++++.....|..--..+..+...+.+|..
T Consensus 25 Q~qV~dv~~n~~~LDa~~~qL~~l~tkV~~Iq~ 57 (94)
T PHA03386 25 QTQLNGLEEDSQPLDGLPAQLTELDTKVSDIQS 57 (94)
T ss_pred HHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 555555555444444433444444444444443
No 136
>PRK10807 paraquat-inducible protein B; Provisional
Probab=21.08 E-value=1e+03 Score=27.68 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004393 67 LALSEQMISQLRENFISIE 85 (756)
Q Consensus 67 L~~a~~~v~~l~~~~~~i~ 85 (756)
|.++.+.++++...+..++
T Consensus 445 L~~~~~tl~~l~~~l~~l~ 463 (547)
T PRK10807 445 LSESQRTMRELQTTLDSLN 463 (547)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 137
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.92 E-value=1e+03 Score=25.40 Aligned_cols=85 Identities=15% Similarity=0.252 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHHHHH
Q 004393 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKLLSN 106 (756)
Q Consensus 28 L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~l~~ 106 (756)
++.++.+.-.+..++..+..++...-+.+-+.-.-.-+.|..++..+.+....+........+-+.-.... ..|.....
T Consensus 167 ~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~ 246 (312)
T smart00787 167 LELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666553333333333444455555555555555544444444444333333 33443333
Q ss_pred HHHHHH
Q 004393 107 ARNNLS 112 (756)
Q Consensus 107 ~~~nl~ 112 (756)
-+.-+.
T Consensus 247 ~k~e~~ 252 (312)
T smart00787 247 KKSELN 252 (312)
T ss_pred HHHHHH
Confidence 333333
No 138
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=20.87 E-value=1.1e+03 Score=27.48 Aligned_cols=36 Identities=3% Similarity=0.244 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHH
Q 004393 31 IGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLES 66 (756)
Q Consensus 31 l~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~ 66 (756)
...++.++.+++..+......-++.+|.........
T Consensus 309 ~~~~~~e~~~~~~~l~~~~~~~L~~eL~~~~~~~~~ 344 (582)
T PF09731_consen 309 EEELREEFEREREELEEKYEEELRQELKRQEEAHEE 344 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777666555443
No 139
>PRK04863 mukB cell division protein MukB; Provisional
Probab=20.55 E-value=2.1e+03 Score=28.77 Aligned_cols=89 Identities=11% Similarity=0.155 Sum_probs=64.1
Q ss_pred HHHHHHHhhcC-CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 004393 13 AAVREVAKLLT-LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQEC 91 (756)
Q Consensus 13 ~a~~~v~~ll~-~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~ 91 (756)
..+..+..++. .+=+.+-+......+..+......++... +.+++.....++.+..+...+..+.+.+. -...+..+
T Consensus 421 ~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~el-E~kL~~lea~leql~~~~~~l~~~~Gkv~-~~~a~~~~ 498 (1486)
T PRK04863 421 QALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSL-EQKLSVAQAAHSQFEQAYQLVRKIAGEVS-RSEAWDVA 498 (1486)
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcC-HHHHHHHH
Confidence 34456666776 45566789999999999999999999887 88888888888888888888888887743 33344444
Q ss_pred HHhhhchHHHHH
Q 004393 92 QTLIENHDQIKL 103 (756)
Q Consensus 92 ~~~v~~~~~Ik~ 103 (756)
......++..+-
T Consensus 499 ~~~~~~~~~~~~ 510 (1486)
T PRK04863 499 RELLRRLREQRH 510 (1486)
T ss_pred HHHHHHhHHHHH
Confidence 555555544443
No 140
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=20.21 E-value=1e+03 Score=25.04 Aligned_cols=63 Identities=19% Similarity=0.316 Sum_probs=37.8
Q ss_pred chhh-HHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhH
Q 004393 27 QLQF-IGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLES----LALSEQMISQLRENFISIERYCQ 89 (756)
Q Consensus 27 ~L~k-l~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~----L~~a~~~v~~l~~~~~~i~~~~~ 89 (756)
+|.. |..+|..+..........+...-+.+++..+.+... +..++..+.+++..+........
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~ 233 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELE 233 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhh
Confidence 3654 777888877777777777777777777666655444 44555555555555444443333
Done!