Query 004393
Match_columns 756
No_of_seqs 161 out of 450
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 23:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004393.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004393hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fji_1 Exocyst complex compone 100.0 1.1E-56 3.9E-61 494.3 34.3 356 388-748 1-399 (399)
2 3hr0_A COG4; conserved oligome 99.2 3.1E-10 1.1E-14 115.6 18.1 216 495-714 20-261 (263)
3 3ns4_A Vacuolar protein sortin 99.0 4.3E-09 1.5E-13 103.7 16.1 120 597-720 20-177 (271)
4 3swh_A MUNC13-1, protein UNC-1 98.7 1.8E-06 6.2E-11 91.2 24.3 280 394-678 9-332 (341)
5 3fhn_A Protein transport prote 98.0 0.038 1.3E-06 63.2 39.4 174 532-715 504-697 (706)
6 3mmi_A Myosin-4; globular tail 94.6 1.3 4.6E-05 46.7 17.9 154 545-704 151-311 (386)
7 2f6h_X Myosin-2, type V myosin 90.5 13 0.00044 40.1 19.1 141 577-720 203-350 (419)
8 3vkg_A Dynein heavy chain, cyt 81.4 90 0.0031 42.4 22.9 67 24-98 1893-1964(3245)
9 3iv1_A Tumor susceptibility ge 75.2 23 0.0008 28.1 9.1 43 42-84 5-47 (78)
10 2a2f_X Exocyst complex compone 67.5 1.2E+02 0.004 31.3 19.0 267 395-670 8-317 (325)
11 1otr_A Protein CUE2; protein-p 56.0 12 0.00042 26.9 3.8 37 678-715 5-42 (49)
12 2etd_A LEMA protein; bromodoma 54.8 96 0.0033 28.7 10.8 23 30-52 12-34 (171)
13 1naf_A ADP-ribosylation factor 54.0 1.3E+02 0.0044 27.4 11.7 53 17-70 21-75 (158)
14 3n1e_A Vacuolar protein sortin 53.5 1.2E+02 0.0042 27.0 10.9 112 532-651 10-128 (141)
15 2l3l_A Tubulin-specific chaper 52.9 60 0.002 27.7 8.3 40 28-67 30-70 (111)
16 1oxz_A ADP-ribosylation factor 52.2 1.3E+02 0.0043 28.3 11.2 52 17-69 37-90 (186)
17 1wgl_A TOLL-interacting protei 45.1 22 0.00077 26.6 3.9 39 676-715 8-47 (59)
18 3zsu_A TLL2057 protein, cyanoq 42.3 1.7E+02 0.0057 25.7 9.5 87 23-121 15-122 (130)
19 3etv_A Protein transport prote 42.3 1E+02 0.0035 31.6 9.4 33 22-54 5-37 (355)
20 1p3q_Q VPS9P, vacuolar protein 41.5 25 0.00085 25.9 3.5 30 676-705 11-40 (54)
21 3ls0_A SLL1638 protein, PSBQ; 38.9 98 0.0034 27.2 7.6 32 23-54 17-48 (133)
22 3hnw_A Uncharacterized protein 38.8 1.6E+02 0.0055 26.1 9.2 74 7-84 56-129 (138)
23 1o3x_A ADP-ribosylation factor 38.8 1.3E+02 0.0044 26.8 8.6 55 17-72 12-68 (140)
24 3qfl_A MLA10; coiled-coil, (CC 38.3 67 0.0023 27.4 6.5 69 29-98 8-78 (115)
25 2odv_A Plectin 1, HD1; plakin 36.7 83 0.0029 30.7 7.7 81 28-111 123-209 (235)
26 1deq_A Fibrinogen (alpha chain 36.1 3.9E+02 0.013 27.7 13.2 13 86-98 102-114 (390)
27 2dhy_A CUE domain-containing p 33.9 52 0.0018 25.3 4.4 39 676-715 17-56 (67)
28 4acr_A Glypican-1; proteoglyca 32.6 86 0.003 34.0 7.5 28 695-723 274-301 (478)
29 1gqe_A Release factor 2, RF2; 32.0 4.5E+02 0.016 27.3 12.7 62 73-135 26-87 (365)
30 3odn_A Dally-like protein; alp 30.3 2.5E+02 0.0086 30.6 10.6 87 561-651 96-184 (506)
31 3o0z_A RHO-associated protein 29.9 3.2E+02 0.011 24.9 12.9 27 39-66 61-87 (168)
32 2di0_A Activating signal coint 28.9 85 0.0029 24.4 4.8 41 675-715 11-51 (71)
33 3tul_A Cell invasion protein S 28.4 3.1E+02 0.011 24.3 11.1 69 30-98 21-95 (158)
34 3ghg_A Fibrinogen alpha chain; 25.2 6.8E+02 0.023 27.2 12.6 100 33-152 50-151 (562)
35 4fla_A Regulation of nuclear P 25.2 3.7E+02 0.013 24.1 11.0 35 84-118 112-147 (152)
36 3mq9_A Bone marrow stromal ant 25.0 6.4E+02 0.022 26.7 14.0 26 70-95 402-427 (471)
37 3hyi_A Protein DUF199/WHIA; la 22.9 1.4E+02 0.0049 30.1 6.8 63 658-724 228-290 (295)
38 1m1j_A Fibrinogen alpha subuni 22.8 7.1E+02 0.024 26.5 13.4 13 86-98 100-112 (491)
39 3edv_A Spectrin beta chain, br 21.7 5.9E+02 0.02 25.2 14.7 119 63-189 4-132 (323)
No 1
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-56 Score=494.33 Aligned_cols=356 Identities=18% Similarity=0.346 Sum_probs=321.1
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhc------ccCCCCCCCCCccccCchhhHHHHHHHHHHHHHhhCchh
Q 004393 388 QVCSESGAMDPLMNSYVERMQATTKKWYLNILDAD------KVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVRENSTDI 461 (756)
Q Consensus 388 ~~ll~~~~~~~L~~~Y~~~~~~~l~ewl~~~l~~e------r~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~~~~~ 461 (756)
+|+|+++.++.|+++|++.++++|++|+.|+++.| |+.+|+.|.+|+|+|++|+|+|+||++|+++|..++.+.
T Consensus 1 ~~ll~~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~ 80 (399)
T 2fji_1 1 GSHMGDKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAK 80 (399)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcc
Confidence 57888899999999999999999999999999999 778999999999999999999999999999999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-----------------------CCCCCCchhhHHhccchHHhHHHHHHHHHHh
Q 004393 462 MLYRIALAIIQVMIDFQAAERERLAE-----------------------PAPEIGLEPLCAMINNNLRCYDLAMELSTST 518 (756)
Q Consensus 462 ~~~~v~~~~~~~l~~f~~~~~~~l~~-----------------------~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~ 518 (756)
...+|+..|+..|..|+..|++.+.+ ..++.+++|+||++|||..|.+++.++..++
T Consensus 81 l~~~v~~~~~~~L~~f~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~liA~~Nn~~~~~e~~~~l~~~~ 160 (399)
T 2fji_1 81 ILVGVVERFSDLLTKRQKNWISKISEEIKKQINYNHKYDIDPESITPEDECPGGLVEYLIAVSNDQMKAADYAVAISSKY 160 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCCTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCccccccccHHHhhhhhhccHHHHHHHHHHHHHHH
Confidence 66599999999999999998876511 1235568999999999999999999999999
Q ss_pred hhhCCcchhhhc--chHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCcchhHHHHHhHHHHHHHHHHHh
Q 004393 519 MEALPPNYAEQV--NFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDGQVTEYLTATFGDYFMDVKMFI 596 (756)
Q Consensus 519 ~~~v~~~~~~~i--~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L 596 (756)
.+.+++.|.+++ +++.+.++|.++++.|++.|++.||.| |+|+|+++||++||+++.|++||.|++||++||+.||
T Consensus 161 ~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~d--l~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L 238 (399)
T 2fji_1 161 GKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDD--LRKPYQEIFSKTWYMGSQAQQIADTLDEYLLDIKPQM 238 (399)
T ss_dssp HTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT--THHHHTTTTSGGGTTCCHHHHHHHHHHHHHHHHGGGS
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhCCchhcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999997766 688999999999999999999999999 9999999999999999899999999999999998899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccccc---HHHHHHHHhHHHHHHHHHHcccchhh-----hhhhhHhHHHHHHh
Q 004393 597 EERSFRRFVEACLEETIVIYIDHLLTQKNYIR---ELTIERLRVDEEVITDFFREYISINK-----VENRVRILTDLREL 668 (756)
Q Consensus 597 ~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~---~~~a~~i~~D~~~l~~~F~~l~s~~~-----v~~~~~~l~~l~~l 668 (756)
+|++|+.|+++++++++.+|+++|++ +..++ +.++++|.+|++.+++||.++++.+. +.+.+.+|+.|++
T Consensus 239 ~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~- 316 (399)
T 2fji_1 239 NSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD- 316 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999998 55455 89999999999999999999998665 7889999999999
Q ss_pred hccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHhcc--c--CCCCCCCcccccccccc
Q 004393 669 ASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVLQECKEIYENSL--V--NGHPPKAGFVFSRVKCL 744 (756)
Q Consensus 669 l~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l~~~~~~~~~~l--~--~~~~~~~~~ifs~i~~~ 744 (756)
|++++++++.++|.+++..|||++++||++||.+|||++|++++++++.|+++..+.- . .+.+ .|+|||||+.+.
T Consensus 317 L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ll~~~~~~~~~~~~~~~~~~~~-~~~t~~~~~~~~ 395 (399)
T 2fji_1 317 LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQATEMLHEYRRNMEANGVD-REPTLMRRFVLE 395 (399)
T ss_dssp HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCGGGGCCCC
T ss_pred hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhHHHHhhccccC-CCCchhhhhhhh
Confidence 9975549999999999999999999999999999999999999999999987765431 1 1223 344599999997
Q ss_pred cccc
Q 004393 745 SASK 748 (756)
Q Consensus 745 ~~~~ 748 (756)
++-|
T Consensus 396 ~~~~ 399 (399)
T 2fji_1 396 FEKQ 399 (399)
T ss_dssp CCCC
T ss_pred cccC
Confidence 7643
No 2
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=99.22 E-value=3.1e-10 Score=115.57 Aligned_cols=216 Identities=10% Similarity=0.139 Sum_probs=167.8
Q ss_pred hhhHHhccchHHhHHHHHHHHHHhhhh----CCcch-----hhhc-----chHHHhhhHHHHHHHHHHHHHHHHhcCCCc
Q 004393 495 EPLCAMINNNLRCYDLAMELSTSTMEA----LPPNY-----AEQV-----NFEDACKGFLEVTKEAVRHTLNVIFEDPGV 560 (756)
Q Consensus 495 ~~lia~~N~~~~c~e~~~~l~~~~~~~----v~~~~-----~~~i-----~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l 560 (756)
..+|.++||-..|.+|+.++.+.+.+. +|... .+++ ++.+..+.|.++.+.++..|...++. |.+
T Consensus 20 ~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ik-prL 98 (263)
T 3hr0_A 20 MSFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIK-PQV 98 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHH
T ss_pred hhHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHH
Confidence 457899999999999998876655432 32211 1112 24455567778889999999876655 448
Q ss_pred hHHHhhhccccccCc----------ch-hHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccH
Q 004393 561 EQLLVKLYQKEWSDG----------QV-TEYLTATFGDYFMDVKMFIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRE 629 (756)
Q Consensus 561 ~p~~~~lft~~W~~~----------~~-v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~ 629 (756)
+|.+..++....+-+ ++ +...+...+..+..|+.+|.+..|+.|+.-+...++...-+.+++++ ++.
T Consensus 99 r~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~~~--fn~ 176 (263)
T 3hr0_A 99 QPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKST--FNR 176 (263)
T ss_dssp HHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTCC--BCH
T ss_pred HHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHhCC--cCc
Confidence 999988877665422 23 78888999999999999999999999999999988777777777754 699
Q ss_pred HHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHHHHHHHHHh-hCCCCCHHHHHHHHHhcCCCCh
Q 004393 630 LTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFALIYTNILE-HQPDCPPEVVERLVALRDGIPR 708 (756)
Q Consensus 630 ~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~-~~pD~s~~~v~~iL~~R~Dl~r 708 (756)
-||=++.+|+..+.++|....+.. +...|..+..|.-|+++++++++...|..-.. .-|.+|++.+.++|.+|-|++.
T Consensus 177 lGal~LdrDvr~li~~~~~~~~~~-lRekF~RL~QI~~lLnle~~eev~d~~~~~~~~~~W~Ls~~E~r~il~lRvDf~~ 255 (263)
T 3hr0_A 177 LGGLQFDKELRSLIAYLTTVTTWT-IRDKFARLSQMATILNLERVTEILDYWGPNSGPLTWRLTPAEVRQVLALRIDFRS 255 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTT-HHHHTHHHHHHHHHHTCSSGGGGGGTSGGGGTTCCCCSCHHHHHHHHTTBTTSCH
T ss_pred hhHHHHHHHHHHHHHHHHhccchh-hhHHHHHHHHHHHHHcCCChHHHHHHhcccCCCccccCCHHHHHHHHHhhccCCH
Confidence 999999999999999998866544 67899999999999999998877643322111 2389999999999999999999
Q ss_pred HhHHHH
Q 004393 709 KDAKEV 714 (756)
Q Consensus 709 ~~~~~~ 714 (756)
++++.+
T Consensus 256 e~I~~l 261 (263)
T 3hr0_A 256 EDIKRL 261 (263)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 998764
No 3
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=99.04 E-value=4.3e-09 Score=103.72 Aligned_cols=120 Identities=14% Similarity=0.185 Sum_probs=101.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-Hhcccc--c------------cHH-HHHHHHhHHHHHHHHHHcccchh-------
Q 004393 597 EERSFRRFVEACLEETIVIYIDHL-LTQKNY--I------------REL-TIERLRVDEEVITDFFREYISIN------- 653 (756)
Q Consensus 597 ~~~~~~~l~~~l~~~~v~~Yi~~l-~~~k~~--~------------~~~-~a~~i~~D~~~l~~~F~~l~s~~------- 653 (756)
++.|+..||+++.+.++..|+++| .+|++. + +.. +||||+.|++.|+++|.++|+..
T Consensus 20 R~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~ 99 (271)
T 3ns4_A 20 RDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLR 99 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 478999999999999999999999 678874 1 456 99999999999999999998631
Q ss_pred ----------hhhhhhHhHHHHHHhh--ccCChhhHHHHHHHHHhhCCC-CCHHHHHHHHHhcCCC--ChHhHHHHHHHH
Q 004393 654 ----------KVENRVRILTDLRELA--SANSVDAFALIYTNILEHQPD-CPPEVVERLVALRDGI--PRKDAKEVLQEC 718 (756)
Q Consensus 654 ----------~v~~~~~~l~~l~~ll--~~~~~~~~~~~~~~l~~~~pD-~s~~~v~~iL~~R~Dl--~r~~~~~~l~~~ 718 (756)
.|...+..+++|++++ ..++|+.++..|..|+ || .+...+++||++|| + +.++.+.+.+..
T Consensus 100 ~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li---~dn~s~~nF~KIL~LKG-v~wdl~~wk~~~~~f 175 (271)
T 3ns4_A 100 ENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLT---NNNPDSAVWSFVLALKG-IPWDLALWKKMWSAY 175 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHT---TSCCCHHHHHHHHHHHT-CCSCHHHHHHHHHHH
T ss_pred CCcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc---CCCCCHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence 1334567799999998 4578888999998886 88 99999999999998 6 588999999888
Q ss_pred HH
Q 004393 719 KE 720 (756)
Q Consensus 719 ~~ 720 (756)
+.
T Consensus 176 ~l 177 (271)
T 3ns4_A 176 NL 177 (271)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 4
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=98.73 E-value=1.8e-06 Score=91.19 Aligned_cols=280 Identities=12% Similarity=0.165 Sum_probs=167.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCccccCchhhHHHHHHHHHHHHHhh--Cchh----HHHHHH
Q 004393 394 GAMDPLMNSYVERMQATTKKWYLNILDADKVQPPKRTEDGKLYTPAAVDLFRILGEQVQIVREN--STDI----MLYRIA 467 (756)
Q Consensus 394 ~~~~~L~~~Y~~~~~~~l~ewl~~~l~~er~~~Pe~d~dg~~~t~~~~dlfqmi~qql~~a~~~--~~~~----~~~~v~ 467 (756)
.-+.+.+..++.....+..+|+.++++.|+-.+-+...++..+|++.+|+|.+++|.++.-... .... ...+++
T Consensus 9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~ 88 (341)
T 3swh_A 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFA 88 (341)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 3467888999999999999999999998876444433467789999999999999999887632 2211 122455
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCchhhHHhccchHHhHHHHHHHHHHhhh-hCCcchhhhcchHHHhhhHHHHHHHH
Q 004393 468 LAIIQVMIDFQAAERERLAEPAPEIGLEPLCAMINNNLRCYDLAMELSTSTME-ALPPNYAEQVNFEDACKGFLEVTKEA 546 (756)
Q Consensus 468 ~~~~~~l~~f~~~~~~~l~~~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~-~v~~~~~~~i~~~~~~~~f~~l~~~~ 546 (756)
..+++.+..|.....+.+.......+...+|.++||..+.....+.+.+.+.- .+.+...+ -+..+......+..+.
T Consensus 89 ~~i~~~~~~Y~~~l~~~~~~~~~~e~~~~~Cv~lNNie~lR~~L~~l~~~l~~~~l~~~~~~--~~~~lq~~l~~vl~~l 166 (341)
T 3swh_A 89 KTISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASG--TLKELQVKLNNVLDEL 166 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhcccHHHHHHHHHHHHHhcchhhHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 66666666666655555533222223466999999999888777776665521 11111111 1222333333333333
Q ss_pred HHHHHHHHhcCCCchHHHhhhc-------------cccccCc-----chhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHH
Q 004393 547 VRHTLNVIFEDPGVEQLLVKLY-------------QKEWSDG-----QVTEYLTATFGDYFMDVKMFIEERSFRRFVEAC 608 (756)
Q Consensus 547 ~~~L~~~i~~d~~l~p~~~~lf-------------t~~W~~~-----~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l 608 (756)
+..+.+.+..+ ++.+...|. ...|-.. +.+..+..-+++.+.-+...+.+..|..++..+
T Consensus 167 ~~~~~~~~~~~--i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~l 244 (341)
T 3swh_A 167 SHVFATSFQPH--IEECVRQMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKEL 244 (341)
T ss_dssp HHHHHHHTHHH--HHHHHHHHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222 333333322 1235321 246777777888888888788888899999988
Q ss_pred HHHHHHHHHHHH------------Hhccc--cccHHHHHHHHhHHHHHHHHHHcccch---hhhh--hhhHhHHHHHHhh
Q 004393 609 LEETIVIYIDHL------------LTQKN--YIRELTIERLRVDEEVITDFFREYISI---NKVE--NRVRILTDLRELA 669 (756)
Q Consensus 609 ~~~~v~~Yi~~l------------~~~k~--~~~~~~a~~i~~D~~~l~~~F~~l~s~---~~v~--~~~~~l~~l~~ll 669 (756)
-..++......+ +.+.. .........+..+.+.|++||..-+.+ +.++ ..+..+..++.+-
T Consensus 245 W~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~ 324 (341)
T 3swh_A 245 WKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLY 324 (341)
T ss_dssp HHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHh
Confidence 888888777765 12211 124678899999999999999866543 2221 1356666777765
Q ss_pred ccCChhhHH
Q 004393 670 SANSVDAFA 678 (756)
Q Consensus 670 ~~~~~~~~~ 678 (756)
..+. +.+.
T Consensus 325 ~~~T-~~LI 332 (341)
T 3swh_A 325 TQAT-DLLI 332 (341)
T ss_dssp ---------
T ss_pred cCCH-HHHH
Confidence 5443 4443
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.038 Score=63.19 Aligned_cols=174 Identities=8% Similarity=0.126 Sum_probs=126.7
Q ss_pred hHHHhhhHHHHHHH-HHHHHHHHHhcCCCchHHHhhhcc-ccccCc--------------ch-hHHHHHhHHHHHHHHHH
Q 004393 532 FEDACKGFLEVTKE-AVRHTLNVIFEDPGVEQLLVKLYQ-KEWSDG--------------QV-TEYLTATFGDYFMDVKM 594 (756)
Q Consensus 532 ~~~~~~~f~~l~~~-~~~~L~~~i~~d~~l~p~~~~lft-~~W~~~--------------~~-v~~i~~ti~dy~~d~~~ 594 (756)
|+++...|..+.+. +...++..+..+ ++..++..++ ..|.+. ++ ....+.++..++.-+..
T Consensus 504 FDetIs~Y~~L~~~~~~~~Iv~~v~~e--ik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~ 581 (706)
T 3fhn_A 504 FQNVENDYEKAMSTDMQNSIVHRIQKL--LKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDS 581 (706)
T ss_dssp THHHHHHHHHHHHTHHHHHHHHHHHHH--HHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78889999999999 899999988887 8888888887 579631 12 45667788888888887
Q ss_pred H-hhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCC
Q 004393 595 F-IEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANS 673 (756)
Q Consensus 595 ~-L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~ 673 (756)
. +.+..|..++..++..+.......++. +..++..||.|+..|...|...|. +|.+. ....++.+..-..||++.-
T Consensus 582 ~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~~~-~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 582 MDIPLAISLKVKNELLNVIVNYFTESILK-LNKFNQNGLNQFLHDFKSLSSILS-LPSHA-TNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTTT-TSCBCHHHHHHHHHHHHHHHTTSC-CCTTC-CCHHHHHHHHHHHHHGGGG
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCccCHHHHHHHHHHHHHHHHHhc-CCCcc-hhhHHHHHHHHHHHcCCCC
Confidence 6 588889999999999877766777777 444799999999999999999998 65433 3346777777778876632
Q ss_pred hhhHHHHHH--HHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHH
Q 004393 674 VDAFALIYT--NILEHQPDCPPEVVERLVALRDGIPRKDAKEVL 715 (756)
Q Consensus 674 ~~~~~~~~~--~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l 715 (756)
... ..++. ..++ -.+ .+.+...+.+.- ++.++++..+
T Consensus 659 d~~-~~~f~~~~y~~-~~~--~~~l~~~~~i~~-l~~~~i~d~l 697 (706)
T 3fhn_A 659 DPN-NQQFLNPEYIK-TGN--FTSLKEAYSIKY-LKDTKIQDAL 697 (706)
T ss_dssp CGG-GTTTTSHHHHH-HCC--CSHHHHHHTCSS-SCHHHHHHHH
T ss_pred Ccc-hhhHHHHHHHc-cCC--hHHHHHhcCccc-CCHHHHHHHH
Confidence 111 11111 1111 023 346777778874 8888888766
No 6
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=94.62 E-value=1.3 Score=46.71 Aligned_cols=154 Identities=6% Similarity=0.029 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCCCchHHHhhhcc---ccccCc--c-hhHHHHHhHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHH
Q 004393 545 EAVRHTLNVIFEDPGVEQLLVKLYQ---KEWSDG--Q-VTEYLTATFGDYFMDVKM-FIEERSFRRFVEACLEETIVIYI 617 (756)
Q Consensus 545 ~~~~~L~~~i~~d~~l~p~~~~lft---~~W~~~--~-~v~~i~~ti~dy~~d~~~-~L~~~~~~~l~~~l~~~~v~~Yi 617 (756)
+..+.+.+.+... ++|.++.+.+ ++-..+ . .++.|+..+..++.-++. +++|.+...++.++...+-...+
T Consensus 151 ~IY~~~i~~lkk~--L~~ilP~~~~~~~~k~~~~~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lF 228 (386)
T 3mmi_A 151 KIYSTWLVKFMKH--ASAHIEIFDMVLNEKLFKNSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLF 228 (386)
T ss_dssp HHHHHHHHHHHHH--HHHHHTHHHHHTCGGGSSSCCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHhhcccccccccccccCCCCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHH
Confidence 5555566655555 5665544432 222222 2 388899888888877765 46788999999999999999999
Q ss_pred HHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhhhhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHH
Q 004393 618 DHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKVENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVE 697 (756)
Q Consensus 618 ~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~ 697 (756)
+.|+-++..|+-.-|.+|+-.+..|.++... ..+. ....+..+-..+.++.+.. ... .++..+...+|.+++.++.
T Consensus 229 N~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~-~l~~-a~~~L~~L~QA~~LLQ~~K-~t~-~Di~~i~~~C~~Lsp~QL~ 304 (386)
T 3mmi_A 229 NDLITKCPALNWKYGYEVDRNIERLVSWFEP-RIED-VRPNLIQIIQAVKILQLKI-SNL-NEFKLLFDFWYALNPAQIQ 304 (386)
T ss_dssp HHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT-TSSC-CGGGGHHHHHHHHHHHCCC-CCH-HHHHHHHTTCCSSCHHHHH
T ss_pred HHHHccCcccCcchHHHHHhhHHHHHHHHHh-ccHH-HHHHHHHHHHHHHHHccCC-CCH-HHHHHHHHhcccCCHHHHH
Confidence 9999888888999999999999999999998 4322 2246777777777775532 222 3666777788999999999
Q ss_pred HHHHhcC
Q 004393 698 RLVALRD 704 (756)
Q Consensus 698 ~iL~~R~ 704 (756)
+||..=.
T Consensus 305 kIL~~Y~ 311 (386)
T 3mmi_A 305 AILLKYK 311 (386)
T ss_dssp HHHHTBC
T ss_pred HHHHhCc
Confidence 9998644
No 7
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=90.45 E-value=13 Score=40.09 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=105.0
Q ss_pred hhHHHHHhHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhHHHHHHHHHHcccchhhh
Q 004393 577 VTEYLTATFGDYFMDVKM-FIEERSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVDEEVITDFFREYISINKV 655 (756)
Q Consensus 577 ~v~~i~~ti~dy~~d~~~-~L~~~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D~~~l~~~F~~l~s~~~v 655 (756)
.++.|+..+..++.-++. +++|.+.+.++.++..-+-..-++.|+-++..|+-.-|.+|+-.+..|.+++.+..-.. .
T Consensus 203 ~~~~Il~~L~~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l~~-a 281 (419)
T 2f6h_X 203 TMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGLTD-G 281 (419)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTCTT-H
T ss_pred CHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCChh-H
Confidence 378888888888877754 35688899999999998889999999988888898999999999999999999865432 2
Q ss_pred hhhhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcC------CCChHhHHHHHHHHHH
Q 004393 656 ENRVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRD------GIPRKDAKEVLQECKE 720 (756)
Q Consensus 656 ~~~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~------Dl~r~~~~~~l~~~~~ 720 (756)
...+..+-..+.++.+.... ..++..+...+|-+++..+.+||.+=. .++.+-.+.+....++
T Consensus 282 ~~~L~~l~Qa~~lLq~~k~~--~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~e~~v~~~~i~~v~~~~~~ 350 (419)
T 2f6h_X 282 TECLQHLIQTAKLLQVRKYT--IEDIDILRGICYSLTPAQLQKLISQYQVADYESPIPQEILRYVADIVKK 350 (419)
T ss_dssp HHHTHHHHHHHHHTTSCCSS--HHHHHHHHHHTTTSCHHHHHHHHHHCCCCTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCc--hhhHHHHHHHhhcCCHHHHHHHHHhCCCccCCCCCCHHHHHHHHHHHhc
Confidence 33567777777777543321 245666777789999999999998643 1444555555544443
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.37 E-value=90 Score=42.36 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCCc-hhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHhHHhhhch
Q 004393 24 LPDQ-LQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERY----CQECQTLIENH 98 (756)
Q Consensus 24 ~p~~-L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~----~~~~~~~v~~~ 98 (756)
+|.+ |+-|..|+.-+.+|+..++. +.+--+.|+.+|.+|...|.++++++...+.. ..+++.+...+
T Consensus 1893 TP~syLeli~~y~~ll~~K~~el~~--------~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i 1964 (3245)
T 3vkg_A 1893 TPRHYLDFINQVVLLINEKRDQLEE--------EQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQM 1964 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4654 57789999989888888744 45556789999999999999999999876643 34445555555
No 9
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=75.24 E-value=23 Score=28.11 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=35.3
Q ss_pred HhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 42 QQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISI 84 (756)
Q Consensus 42 ~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i 84 (756)
.++|+.+|+..++..++..+.-++.|..+++++..=+..+.+|
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~m 47 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEM 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4688999999999999999999999999998887666555543
No 10
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=67.47 E-value=1.2e+02 Score=31.27 Aligned_cols=267 Identities=10% Similarity=0.086 Sum_probs=135.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhccc--------------------CCCCCCCCC----ccccCchhhHHHHHHHH
Q 004393 395 AMDPLMNSYVERMQATTKKWYLNILDADKV--------------------QPPKRTEDG----KLYTPAAVDLFRILGEQ 450 (756)
Q Consensus 395 ~~~~L~~~Y~~~~~~~l~ewl~~~l~~er~--------------------~~Pe~d~dg----~~~t~~~~dlfqmi~qq 450 (756)
.+..+.+.|.+...+.-..=+.+++..|.- ..|+.+..+ .+.|+....++..|+.-
T Consensus 8 ~L~~l~d~Y~elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~f 87 (325)
T 2a2f_X 8 LLHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEF 87 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHH
Confidence 345677888888777777777777766621 122221111 45566666666666666
Q ss_pred HHHHHhhCchh----H-HHHHHHHHHHHHH-H-HHHHHHHHHcCCCCCCCchhhHHhccchHHhHHHHHHHHHHhhhhCC
Q 004393 451 VQIVRENSTDI----M-LYRIALAIIQVMI-D-FQAAERERLAEPAPEIGLEPLCAMINNNLRCYDLAMELSTSTMEALP 523 (756)
Q Consensus 451 l~~a~~~~~~~----~-~~~v~~~~~~~l~-~-f~~~~~~~l~~~~~~~~~~~lia~~N~~~~c~e~~~~l~~~~~~~v~ 523 (756)
+.-+..-..+. . ...++...+..|- . +-......+..+ ..++..++=++=|..+...-+..++.-+.....
T Consensus 88 i~~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~--~~~l~qi~Qi~iNl~~le~ac~~le~~l~~~~~ 165 (325)
T 2a2f_X 88 MYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQP--SITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTN 165 (325)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TSCHHHHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 55544322221 1 1122322222221 1 222333444332 222444443332322222222222222221111
Q ss_pred cchhhhcchHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCc------ch-hHHHHHhHHHHHHHHHHHh
Q 004393 524 PNYAEQVNFEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDG------QV-TEYLTATFGDYFMDVKMFI 596 (756)
Q Consensus 524 ~~~~~~i~~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~------~~-v~~i~~ti~dy~~d~~~~L 596 (756)
...... -...+.|.+..+.|-..+...+-.. +...+ .+-.=.|... +. +..++.-++..+..+. .|
T Consensus 166 ~~~~~~---l~a~~~f~~~r~~Ae~~I~~~v~~K--IDdfl-~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~sl~-~L 238 (325)
T 2a2f_X 166 TERSVS---QTPSAMFHVARQDAEKQVGLRICSK--IDEFF-ELSAYDWLLVEPPGIASAFITDMISYLKSTFDSFA-FK 238 (325)
T ss_dssp CCC----------CCSCCCTTHHHHHHHHHHHHH--HHHHH-TTCCTTCC----CCSCCHHHHHHHHHHHHHHHTTT-TT
T ss_pred CCcccc---hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HhcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHH-cC
Confidence 111110 1123444445555556666655444 55555 4444569753 23 6667666666666444 57
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHhHHHHHHHHHHcccch----hhhhhhhHhHHHHHHhhc
Q 004393 597 EERSFRRFVEACLEETIVIYIDHLLTQK-NYIRELTIERLRVDEEVITDFFREYISI----NKVENRVRILTDLRELAS 670 (756)
Q Consensus 597 ~~~~~~~l~~~l~~~~v~~Yi~~l~~~k-~~~~~~~a~~i~~D~~~l~~~F~~l~s~----~~v~~~~~~l~~l~~ll~ 670 (756)
.+...+.++-....++-...+.-++... +.++..|..++..|+..+.+|-.+.+-. ..+...|.-|..+.+++.
T Consensus 239 P~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~ 317 (325)
T 2a2f_X 239 LPHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLI 317 (325)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHH
Confidence 7778888888888888888777666431 2258899999999999999998663221 224456666667766653
No 11
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=56.02 E-value=12 Score=26.92 Aligned_cols=37 Identities=5% Similarity=0.040 Sum_probs=26.7
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHH-hcCCCChHhHHHHH
Q 004393 678 ALIYTNILEHQPDCPPEVVERLVA-LRDGIPRKDAKEVL 715 (756)
Q Consensus 678 ~~~~~~l~~~~pD~s~~~v~~iL~-~R~Dl~r~~~~~~l 715 (756)
...+..|...||+++...++.+|. ++||+++ ..+.++
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~-Ai~~LL 42 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDL-TIGLLL 42 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHH-HHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHH-HHHHHH
Confidence 346677888999999999999888 5666643 334444
No 12
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=54.77 E-value=96 Score=28.67 Aligned_cols=23 Identities=9% Similarity=0.081 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhhHHHHHhHH
Q 004393 30 FIGDMKADYIARQQANDSQLSTM 52 (756)
Q Consensus 30 kl~~~~~~~~~~~~~id~~Lk~~ 52 (756)
++-.++.++..--+.||.+|+..
T Consensus 12 ~~~~l~~~v~~a~s~Id~qL~RR 34 (171)
T 2etd_A 12 HLVSLEQEVQEXYSQIQNQLQRR 34 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777776654
No 13
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=53.96 E-value=1.3e+02 Score=27.38 Aligned_cols=53 Identities=19% Similarity=0.318 Sum_probs=33.8
Q ss_pred HHHhhcC--CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 004393 17 EVAKLLT--LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALS 70 (756)
Q Consensus 17 ~v~~ll~--~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a 70 (756)
++.+|++ +|+||..-..+.+.+..+...--.+++.. .+.|+.++..+..|.+-
T Consensus 21 ~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~-~seLe~V~~nv~LL~EM 75 (158)
T 1naf_A 21 MLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKR-VNAIEEVNNNVKLLTEM 75 (158)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 6888998 59999887777777766554433344443 23566666555555544
No 14
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=53.52 E-value=1.2e+02 Score=26.97 Aligned_cols=112 Identities=9% Similarity=0.066 Sum_probs=74.3
Q ss_pred hHHHhhhHHHHHHHHHHHHHHHHhcCCCchHHHhhhccccccCc----ch-hHHHHHhHHHHHHHHHHHhhhhHHHHHHH
Q 004393 532 FEDACKGFLEVTKEAVRHTLNVIFEDPGVEQLLVKLYQKEWSDG----QV-TEYLTATFGDYFMDVKMFIEERSFRRFVE 606 (756)
Q Consensus 532 ~~~~~~~f~~l~~~~~~~L~~~i~~d~~l~p~~~~lft~~W~~~----~~-v~~i~~ti~dy~~d~~~~L~~~~~~~l~~ 606 (756)
|+.+..-|.+=..+-..-|+.++-.- ...++ .+|-.. ++ +.+||.-+.-...-+..+|.+.-.+.+..
T Consensus 10 fDkv~rdy~eH~~eI~~KLv~Im~~r--~~~~l-----~~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~ 82 (141)
T 3n1e_A 10 FDHITKDYHDHIAEISAKLVAIMDSL--FDKLL-----SKYEVKAPVPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFL 82 (141)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHH--HHHHH-----TTCCCCSSSSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-----HHhccCCCCCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 34444555555555555566554332 33333 278642 33 88888777777777777888888888888
Q ss_pred HHHHHHHHHHHHHHHhccccccHHHHHH--HHhHHHHHHHHHHcccc
Q 004393 607 ACLEETIVIYIDHLLTQKNYIRELTIER--LRVDEEVITDFFREYIS 651 (756)
Q Consensus 607 ~l~~~~v~~Yi~~l~~~k~~~~~~~a~~--i~~D~~~l~~~F~~l~s 651 (756)
.++..+-..+-.++-+-.. .++.|.+. |..|+.-+.+-+.++..
T Consensus 83 ~Vf~~fk~~l~~~~~~~~i-~~~~G~q~g~v~~Dv~ff~~~L~~L~g 128 (141)
T 3n1e_A 83 RINASYKLHLKKQLSHLNV-INDGGPQNGLVTADVAFYTGNLQALKG 128 (141)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CSSSSHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHcCC-CCCCcccchHHHHHHHHHHHHhcccCC
Confidence 8888877777777766443 25555554 88999988888888865
No 15
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=52.86 E-value=60 Score=27.73 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=27.8
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHhHH-HHHHHHHHHHHHHHH
Q 004393 28 LQFIGDMKADYIARQQANDSQLSTM-VAEQIEQAQTGLESL 67 (756)
Q Consensus 28 L~kl~~~~~~~~~~~~~id~~Lk~~-v~~ql~~~~~gl~~L 67 (756)
-++++.+...+..++.+|+.+|..+ +...++.+..++..|
T Consensus 30 ~E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~L 70 (111)
T 2l3l_A 30 KENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGL 70 (111)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 3689999999999999999998744 233344444444333
No 16
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=52.25 E-value=1.3e+02 Score=28.26 Aligned_cols=52 Identities=19% Similarity=0.334 Sum_probs=27.8
Q ss_pred HHHhhcC--CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 004393 17 EVAKLLT--LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLAL 69 (756)
Q Consensus 17 ~v~~ll~--~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~ 69 (756)
++.+|++ +|+||..-..+.+-+..+...--.+++.. .+.++.++..+..|.+
T Consensus 37 ~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~-~~eLe~V~~nv~LL~E 90 (186)
T 1oxz_A 37 MLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKR-VNAIEEVNNNVKLLTE 90 (186)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 5677777 48888776666665555443332333333 2245555544444443
No 17
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=45.07 E-value=22 Score=26.64 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhhCCCCCHHHHHHHHHhc-CCCChHhHHHHH
Q 004393 676 AFALIYTNILEHQPDCPPEVVERLVALR-DGIPRKDAKEVL 715 (756)
Q Consensus 676 ~~~~~~~~l~~~~pD~s~~~v~~iL~~R-~Dl~r~~~~~~l 715 (756)
.....+..|...||+++.+.|+++|..- ||+ -..++.++
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdv-d~aI~~LL 47 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNK-DAAINSLL 47 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCH-HHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 3445677788899999999999999754 444 33444444
No 18
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=42.34 E-value=1.7e+02 Score=25.69 Aligned_cols=87 Identities=15% Similarity=0.183 Sum_probs=46.8
Q ss_pred CCCCchhhHHHHHHHHHHHHhhHHHHHhHHHH------------HHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Q 004393 23 TLPDQLQFIGDMKADYIARQQANDSQLSTMVA------------EQIEQAQTGLESLAL---------SEQMISQLRENF 81 (756)
Q Consensus 23 ~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~------------~ql~~~~~gl~~L~~---------a~~~v~~l~~~~ 81 (756)
.+|+++++|..+-.+++.=+..+ .+|...|+ .-+..++..|.-|.. |.+--+++++.+
T Consensus 15 ysp~~i~~iq~y~~~i~~~r~Rl-~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L 93 (130)
T 3zsu_A 15 YSELQITRIQDYLRDIEKNAERF-ADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDF 93 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHH
Confidence 46788888888777776666655 44555543 344444444444332 233333444444
Q ss_pred HHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhh
Q 004393 82 ISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGM 121 (756)
Q Consensus 82 ~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l 121 (756)
.+|+.-+.. +....+.+++..++..+..+
T Consensus 94 ~~LD~AA~~-----------~n~~~a~k~Y~~a~adfdaf 122 (130)
T 3zsu_A 94 LKIDQGADL-----------DSVTVAQEGFREAEADFKAY 122 (130)
T ss_dssp HHHHHHHHT-----------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-----------cCHHHHHHHHHHHHHHHHHH
Confidence 444443333 33455666666666666444
No 19
>3etv_A Protein transport protein TIP20,linker,protein transport protein DSL1; TIP20P-DSL1P complex, endoplasmic reticulum, ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB: 3etu_A
Probab=42.34 E-value=1e+02 Score=31.61 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=18.8
Q ss_pred cCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHH
Q 004393 22 LTLPDQLQFIGDMKADYIARQQANDSQLSTMVA 54 (756)
Q Consensus 22 l~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~ 54 (756)
+.+-+||=.|++...++.++...+-.+|.++-+
T Consensus 5 l~~i~DLl~id~~I~~i~~eRd~La~~lq~~~~ 37 (355)
T 3etv_A 5 MNGIDDLLNINDRIKQVQNERNELASKLQNLKQ 37 (355)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777888888888888888888888666665533
No 20
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=41.46 E-value=25 Score=25.86 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 004393 676 AFALIYTNILEHQPDCPPEVVERLVALRDG 705 (756)
Q Consensus 676 ~~~~~~~~l~~~~pD~s~~~v~~iL~~R~D 705 (756)
.....+..|...||++..+.|+.||..+++
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G 40 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAAS 40 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCC
Confidence 345577888899999999999999998774
No 21
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=38.94 E-value=98 Score=27.25 Aligned_cols=32 Identities=9% Similarity=0.192 Sum_probs=23.0
Q ss_pred CCCCchhhHHHHHHHHHHHHhhHHHHHhHHHH
Q 004393 23 TLPDQLQFIGDMKADYIARQQANDSQLSTMVA 54 (756)
Q Consensus 23 ~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~ 54 (756)
.+|+++++|..+-..++.=+..++.+|...|+
T Consensus 17 ysp~~i~~Iq~y~~~i~~ar~Rl~e~L~~lI~ 48 (133)
T 3ls0_A 17 YSPEKIAQLQVYVNPIAVARDGMEKRLQGLIA 48 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 46888888888877777766666554666654
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=38.80 E-value=1.6e+02 Score=26.10 Aligned_cols=74 Identities=5% Similarity=0.013 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 7 GVEAKEAAVREVAKLLTLPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISI 84 (756)
Q Consensus 7 ~~~a~~~a~~~v~~ll~~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i 84 (756)
+.-|.-+|++-..++|+.-...+.+.+-.....++..++..+|.+. +-+++.+. ..+...++.++++..++.+.
T Consensus 56 ~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~-~~k~e~~~---~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 56 ELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA-QIKAESSA---KEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777766666666665555666666655555544 33333332 22333344444444444443
No 23
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=38.78 E-value=1.3e+02 Score=26.77 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=19.2
Q ss_pred HHHhhcC--CCCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004393 17 EVAKLLT--LPDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQ 72 (756)
Q Consensus 17 ~v~~ll~--~p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~ 72 (756)
++.++++ +|+||..-..+.+-+..+-..--.+++.. .+.++.++..+..|.+-..
T Consensus 12 ~L~~Lirs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~-~~eLe~v~~n~~LL~EML~ 68 (140)
T 1o3x_A 12 MLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKR-VNAIEEVNNNVKLLTEMVM 68 (140)
T ss_dssp ---------------CCCSSTHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6788888 59999764444444444333322333333 2356666666655554433
No 24
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=38.26 E-value=67 Score=27.45 Aligned_cols=69 Identities=10% Similarity=0.168 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 004393 29 QFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALS--EQMISQLRENFISIERYCQECQTLIENH 98 (756)
Q Consensus 29 ~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a--~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (756)
.||..+..+.......+..++... +..|+..+.-+...... +..=..++.-+.+++.++-+.+..+++|
T Consensus 8 ~KL~~ll~~E~~l~~gv~~~i~~L-k~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 8 PKLGELLTEEFKLHKGVKKNIEDL-GKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444333333343333322 34444444333333221 1111346777888888888888888887
No 25
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=36.65 E-value=83 Score=30.73 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHH
Q 004393 28 LQFIGDMKADYIARQQANDSQLSTMVAEQIEQ------AQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQI 101 (756)
Q Consensus 28 L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~------~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~I 101 (756)
|++++++.+++.++-...++.|... ...|.. +..++........++..+.+.+..+...|.+-... +|+++
T Consensus 123 lerLe~La~kf~rka~~~e~~L~~~-~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~e~~i~~l~~~a~~L~~~--~y~~a 199 (235)
T 2odv_A 123 LEALQRIVTKLQMEAGLAEEQLNQA-DALLQSDVRLLAAGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKDG--RHPQG 199 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCcH
Confidence 5666777777777776666666543 111210 00111223444455555555555555555544332 45555
Q ss_pred HHHHHHHHHH
Q 004393 102 KLLSNARNNL 111 (756)
Q Consensus 102 k~l~~~~~nl 111 (756)
.++.....+|
T Consensus 200 ~~i~~r~~~l 209 (235)
T 2odv_A 200 EQMYRRVYRL 209 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5554444444
No 26
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=36.08 E-value=3.9e+02 Score=27.74 Aligned_cols=13 Identities=0% Similarity=-0.038 Sum_probs=5.1
Q ss_pred HHhHHhHHhhhch
Q 004393 86 RYCQECQTLIENH 98 (756)
Q Consensus 86 ~~~~~~~~~v~~~ 98 (756)
....++++.+..|
T Consensus 102 ~q~~dndn~~~e~ 114 (390)
T 1deq_A 102 AKANNNDNTFKQI 114 (390)
T ss_pred HhhccchHHHHHH
Confidence 3333334443333
No 27
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.92 E-value=52 Score=25.33 Aligned_cols=39 Identities=10% Similarity=0.229 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhCCCCCHHHHHHHHH-hcCCCChHhHHHHH
Q 004393 676 AFALIYTNILEHQPDCPPEVVERLVA-LRDGIPRKDAKEVL 715 (756)
Q Consensus 676 ~~~~~~~~l~~~~pD~s~~~v~~iL~-~R~Dl~r~~~~~~l 715 (756)
.+...+..|...||++..+.|+.+|. ++||+ -..++.++
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~v-d~aId~LL 56 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAV-DATIDQLL 56 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCH-HHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 34556667888999999999999996 55565 33455555
No 28
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate, helical B glycoprotein, membrane protein; HET: NAG; 2.55A {Homo sapiens} PDB: 4ad7_A*
Probab=32.57 E-value=86 Score=33.98 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCChHhHHHHHHHHHHHHH
Q 004393 695 VVERLVALRDGIPRKDAKEVLQECKEIYE 723 (756)
Q Consensus 695 ~v~~iL~~R~Dl~r~~~~~~l~~~~~~~~ 723 (756)
.++.-|.--.|+ ..+.+..++....+..
T Consensus 274 VmrGCLa~~adL-d~~W~~~Idsl~~la~ 301 (478)
T 4acr_A 274 VLKGCLANQADL-DAEWRNLLDSMVLITD 301 (478)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHGGG
T ss_pred HHHHhccChhhh-hhhHHHHHHHHHHHHh
Confidence 445555544455 4456666666654433
No 29
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=31.97 E-value=4.5e+02 Score=27.26 Aligned_cols=62 Identities=8% Similarity=0.128 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhcHhHHHHHHHhhc
Q 004393 73 MISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMSISVEAAEAKDSL 135 (756)
Q Consensus 73 ~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~~~~~~~~~~~~l 135 (756)
++..+.+++.++.....+ ++...+-...+++..-++.|...++.++.+....+.++...+++
T Consensus 26 ~l~~~~~r~~el~~~~~~-p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~ 87 (365)
T 1gqe_A 26 DYDAKKERLEEVNAELEQ-PDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 (365)
T ss_dssp THHHHHHHHHHHHHHHHS-GGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcC-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777666554 34556667778888888888888888877777555544443333
No 30
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling, hedgehog VIA CO- immunoprecipitation, membrane protein; 2.40A {Drosophila melanogaster}
Probab=30.31 E-value=2.5e+02 Score=30.56 Aligned_cols=87 Identities=8% Similarity=0.172 Sum_probs=39.4
Q ss_pred hHHHhhhccccccCcchhHHHHHhHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHhH
Q 004393 561 EQLLVKLYQKEWSDGQVTEYLTATFGDYFMDVKMFIEE--RSFRRFVEACLEETIVIYIDHLLTQKNYIRELTIERLRVD 638 (756)
Q Consensus 561 ~p~~~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~--~~~~~l~~~l~~~~v~~Yi~~l~~~k~~~~~~~a~~i~~D 638 (756)
+..+..||++.+-. .-.+-...+.+.+.+++.|+.. ...+..+.+|.+.+...-+. +++....+.....++|..=
T Consensus 96 e~~l~~mF~~tYg~--ly~qn~~~f~~LF~~L~~Yy~g~~v~Lee~v~~Ff~~Lf~~~f~-llnp~~~~s~dY~eCl~~~ 172 (506)
T 3odn_A 96 RTQFNSMFIRTYGV--IYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFT-VLNTQYTFDENYMRCVSEH 172 (506)
T ss_dssp HHHHHHHHHHHTTH--HHHHTHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHH-HHTTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHH-HcCCCCCCChHHHHHHHHH
Confidence 44555666665521 1122223334444444443332 22344444444444443333 2343333466677777665
Q ss_pred HHHHHHHHHcccc
Q 004393 639 EEVITDFFREYIS 651 (756)
Q Consensus 639 ~~~l~~~F~~l~s 651 (756)
.+.|+ -|...|.
T Consensus 173 ~~~l~-PFGdvP~ 184 (506)
T 3odn_A 173 MKELK-PFGDVPD 184 (506)
T ss_dssp HHHHC-TTTTHHH
T ss_pred HHhhC-CcccchH
Confidence 55444 3555543
No 31
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=29.94 E-value=3.2e+02 Score=24.95 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHhHHHHHHHHHHHHHHHH
Q 004393 39 IARQQANDSQLSTMVAEQIEQAQTGLES 66 (756)
Q Consensus 39 ~~~~~~id~~Lk~~v~~ql~~~~~gl~~ 66 (756)
...+.+++.++... |+||+.-+.+..+
T Consensus 61 ~~~k~~Leke~~~L-Qa~L~qEr~~r~q 87 (168)
T 3o0z_A 61 ENSKSQTDKDYYQL-QAILEAERRDRGH 87 (168)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 33333444333332 4444444443333
No 32
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.91 E-value=85 Score=24.43 Aligned_cols=41 Identities=10% Similarity=0.121 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHH
Q 004393 675 DAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVL 715 (756)
Q Consensus 675 ~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l 715 (756)
..+...+..+...|||++..+|.++|..=++=-...++.++
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LL 51 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNIL 51 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44555677788889999999999999976532233333333
No 33
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=28.36 E-value=3.1e+02 Score=24.28 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhhHHH------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch
Q 004393 30 FIGDMKADYIARQQANDS------QLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH 98 (756)
Q Consensus 30 kl~~~~~~~~~~~~~id~------~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~ 98 (756)
.|.++++|+.--++-+++ +|+..-++-+++++.++..++.+.+.+...+..+.+..++...++.-+..+
T Consensus 21 Sl~qL~nrla~~~am~~sqqq~~eqlS~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~~L 95 (158)
T 3tul_A 21 SLSQLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQSL 95 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTC--CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 467777777776655555 455666677888888888887777777777777776666666665555444
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.20 E-value=6.8e+02 Score=27.15 Aligned_cols=100 Identities=6% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhch-HHHHH-HHHHHHH
Q 004393 33 DMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENH-DQIKL-LSNARNN 110 (756)
Q Consensus 33 ~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~-~~Ik~-l~~~~~n 110 (756)
+++.-+.+.-..+..+|... +.+++.. ...=.++..-++.+.+.+..=.....+.++.+..| .++++ +...+..
T Consensus 50 rLQglLdkqErDltkrINEL-KnqLEdl---sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKek 125 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKL-KNSLFEY---QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRK 125 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHTHH---HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHH-HHHHHHH---HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHH
Q 004393 111 LSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALD 152 (756)
Q Consensus 111 l~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le 152 (756)
+...+.+++.|.. +|-..+..+..||
T Consensus 126 VdnQlsnIrvLQs----------------nLedq~~kIQRLE 151 (562)
T 3ghg_A 126 VIEKVQHIQLLQK----------------NVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----------------HHHHHHHHHHHHH
No 35
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=25.19 E-value=3.7e+02 Score=24.10 Aligned_cols=35 Identities=11% Similarity=0.261 Sum_probs=16.6
Q ss_pred HHHHhHHhHHhhhch-HHHHHHHHHHHHHHHHHHHH
Q 004393 84 IERYCQECQTLIENH-DQIKLLSNARNNLSTTLKDV 118 (756)
Q Consensus 84 i~~~~~~~~~~v~~~-~~Ik~l~~~~~nl~~~~~~l 118 (756)
.+....+.....++| ....++..+++-|..-+.+|
T Consensus 112 ~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 112 QKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333334444444455 44555555555555544443
No 36
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=25.03 E-value=6.4e+02 Score=26.75 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhHHhh
Q 004393 70 SEQMISQLRENFISIERYCQECQTLI 95 (756)
Q Consensus 70 a~~~v~~l~~~~~~i~~~~~~~~~~v 95 (756)
-|+.+.+.++++.+++..+..|...|
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTV 427 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhH
Confidence 34444444555555554444444333
No 37
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=22.90 E-value=1.4e+02 Score=30.10 Aligned_cols=63 Identities=8% Similarity=0.068 Sum_probs=49.8
Q ss_pred hhHhHHHHHHhhccCChhhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHHHHHHHHHHh
Q 004393 658 RVRILTDLRELASANSVDAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVLQECKEIYEN 724 (756)
Q Consensus 658 ~~~~l~~l~~ll~~~~~~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l~~~~~~~~~ 724 (756)
....|..+.+.+++++.+.-..++..|.-.|||.|.+.+-.+|. ++|+-.+.-+..+..+.++
T Consensus 228 Qi~~I~~i~e~~Gl~~Lp~~L~e~a~lRl~~pdaSL~ELge~l~----isKSgVnhRlrKL~~iA~~ 290 (295)
T 3hyi_A 228 QIRAIELIKENMGLENLPEDLRRVALVRLRNKELSLRELGKKLN----LTKSQIYSKLKRIIKIAER 290 (295)
T ss_dssp HHHHHHHHHHHTCGGGSCHHHHHHHHHHHHCTTSCHHHHHHTTT----CCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHHHHHHCccccHHHHHHHhC----cCHHHHHHHHHHHHHHHHH
Confidence 34556666666666555555668888888999999999998887 9999999999888887765
No 38
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.84 E-value=7.1e+02 Score=26.50 Aligned_cols=13 Identities=8% Similarity=-0.118 Sum_probs=5.0
Q ss_pred HHhHHhHHhhhch
Q 004393 86 RYCQECQTLIENH 98 (756)
Q Consensus 86 ~~~~~~~~~v~~~ 98 (756)
....++++.+..|
T Consensus 100 ~q~~dndn~~~e~ 112 (491)
T 1m1j_A 100 EGAQQLDENYGHV 112 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhccchhHHHHH
Confidence 3333333333333
No 39
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=21.73 E-value=5.9e+02 Score=25.18 Aligned_cols=119 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHH--HhhhcHhHHHHHHHhhccCC--
Q 004393 63 GLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDV--EGMMSISVEAAEAKDSLGDD-- 138 (756)
Q Consensus 63 gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l--~~l~~~~~~~~~~~~~l~~~-- 138 (756)
|.-.|..=..++.++..-|........ +...-.++..++.+-..|..|..-+..+ .++..+.....+....-..+
T Consensus 4 ~~~~l~~f~~~~~~l~~Wl~~~e~~l~-~~~~g~dl~~v~~l~~~~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~ 82 (323)
T 3edv_A 4 MRHRLFQLNREVDDLEQWIAEREVVAG-SHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSDAA 82 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcCCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCChH
Q ss_pred ------hhHHHHHHHHHHHHhhHHHHHHHhhhchHHHHHHHHHhhcHHHHHHHHHHH
Q 004393 139 ------KELINTYERLTALDGKRRFALAAAESHKEEVGRLREYFEDVDQIWETFEKT 189 (756)
Q Consensus 139 ------~~Ll~ah~~L~~Le~~Rd~~l~~~~~~~~~~~~l~~~F~~v~~l~~~f~~~ 189 (756)
..|-..+..|..+...|...|..+. .+..|+.+++.+..++...
T Consensus 83 ~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~-------~~~~f~~~~~e~~~Wl~~k 132 (323)
T 3edv_A 83 TIAEWKDGLNEAWADLLELIDTRTQILAASY-------ELHKFYHDAKEIFGRIQDK 132 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Done!