Query 004393
Match_columns 756
No_of_seqs 161 out of 450
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 23:48:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004393.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004393hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mn3a_ a.5.2.4 (A:) Vacuolar 56.8 5.8 0.00043 27.5 3.9 41 675-715 10-50 (54)
2 d1wgla_ a.5.2.4 (A:) Toll-inte 43.8 14 0.001 25.9 4.3 36 680-715 12-47 (59)
3 d1gqea_ e.38.1.1 (A:) Polypept 41.7 97 0.0071 29.9 12.1 69 53-123 4-72 (362)
4 d1cuna2 a.7.1.1 (A:116-219) Sp 40.6 59 0.0043 24.6 8.6 68 25-96 26-93 (104)
5 d1xzpa1 a.24.25.1 (A:118-211,A 36.1 62 0.0045 27.5 8.7 17 33-49 27-43 (173)
6 d1upka_ a.118.1.15 (A:) Mo25 p 27.2 2.4E+02 0.018 26.4 13.0 79 538-628 133-216 (330)
7 d2spca_ a.7.1.1 (A:) Spectrin 22.5 1.4E+02 0.01 22.1 9.6 61 25-90 32-93 (107)
8 d1qpza1 a.35.1.5 (A:2-58) Puri 20.5 74 0.0054 21.8 4.8 32 690-721 11-42 (57)
9 d1vp7a_ a.7.13.1 (A:) Exonucle 20.1 92 0.0067 22.1 5.4 52 27-86 11-62 (68)
10 d2etda1 a.29.9.1 (A:35-183) Hy 19.4 2.2E+02 0.016 23.1 10.7 105 31-153 1-105 (149)
No 1
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=56.81 E-value=5.8 Score=27.45 Aligned_cols=41 Identities=12% Similarity=0.175 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHH
Q 004393 675 DAFALIYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVL 715 (756)
Q Consensus 675 ~~~~~~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l 715 (756)
......+..|...||++..+.+++||..+++=--....+++
T Consensus 10 ~e~~e~~~~Lk~MFP~~D~~VI~~VL~a~~G~vd~aidaLL 50 (54)
T d1mn3a_ 10 NERKDTLNTLQNMFPDMDPSLIEDVCIAKKSRIEPCVDALL 50 (54)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHSCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 56677788999999999999999999987643233444444
No 2
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.85 E-value=14 Score=25.91 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=26.8
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcCCCChHhHHHHH
Q 004393 680 IYTNILEHQPDCPPEVVERLVALRDGIPRKDAKEVL 715 (756)
Q Consensus 680 ~~~~l~~~~pD~s~~~v~~iL~~R~Dl~r~~~~~~l 715 (756)
.+..|...||++..+.|++||...+.---.....+|
T Consensus 12 ~i~~LkeMFP~~D~~vI~~VL~a~~G~vd~aid~LL 47 (59)
T d1wgla_ 12 DLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLL 47 (59)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 466788899999999999999976643344445555
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=41.65 E-value=97 Score=29.87 Aligned_cols=69 Identities=12% Similarity=0.166 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004393 53 VAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNNLSTTLKDVEGMMS 123 (756)
Q Consensus 53 v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~nl~~~~~~l~~l~~ 123 (756)
++.++.....-+..|... =++..++.++.++...+..+.. ..+-...++++.-+++|...++.++.+..
T Consensus 4 l~~~i~eL~~rl~~Lr~~-fDld~kk~Rl~ELE~~lsdP~f-W~D~~kAqkl~KE~s~L~~iVe~~~~l~~ 72 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGY-LDYDAKKERLEEVNAELEQPDV-WNEPERAQALGKERSSLEAVVDTLDQMKQ 72 (362)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHSGGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHhcCChh-hhCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666533 3577888888888888775443 36667778888888888887777666655
No 4
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=40.55 E-value=59 Score=24.61 Aligned_cols=68 Identities=7% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhh
Q 004393 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIE 96 (756)
Q Consensus 25 p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~ 96 (756)
|.|++.+.. +.++...++..+.+.-..--.-...|-..+....-+...|++.+..++..+.+-...+.
T Consensus 26 g~d~~~v~~----ll~~h~~~~~ei~~~~~~~~~l~~~g~~L~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~ 93 (104)
T d1cuna2 26 GDTLAAIQG----LLKKHEAFETDFTVHKDRVNDVCANGEDLIKKNNHHVENITAKMKGLKGKVSDLEKAAA 93 (104)
T ss_dssp CSSHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655 45566666666666543333444455555555555566777777777777766544433
No 5
>d1xzpa1 a.24.25.1 (A:118-211,A:372-450) TrmE connector domain {Thermotoga maritima [TaxId: 2336]}
Probab=36.07 E-value=62 Score=27.52 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhHHHHH
Q 004393 33 DMKADYIARQQANDSQL 49 (756)
Q Consensus 33 ~~~~~~~~~~~~id~~L 49 (756)
++.-.+.++...+..+|
T Consensus 27 ~l~G~ls~~i~~ir~~L 43 (173)
T d1xzpa1 27 NLKGGLRDFVDSLRREL 43 (173)
T ss_dssp HHTTHHHHHHHHHHHHH
T ss_pred HcCCchhHHHHHHHHHH
Confidence 34444444444444443
No 6
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.15 E-value=2.4e+02 Score=26.38 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHH--HHHHHhcCCCchHHHhhhccccccCcc---hhHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 004393 538 GFLEVTKEAVRH--TLNVIFEDPGVEQLLVKLYQKEWSDGQ---VTEYLTATFGDYFMDVKMFIEERSFRRFVEACLEET 612 (756)
Q Consensus 538 ~f~~l~~~~~~~--L~~~i~~d~~l~p~~~~lft~~W~~~~---~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~l~~~~ 612 (756)
....+..+|+.+ +...|+.+ |.|..+| +|...+ .......|+++.+. -++.....|+..=.+.|
T Consensus 133 ~~G~mLREcik~e~lak~iL~s----~~f~~fF--~yv~~~~FdiasDAf~TfkelLt-----~hk~~~aefl~~Nyd~F 201 (330)
T d1upka_ 133 NCGIMLRECIRHEPLAKIILWS----EQFYDFF--RYVEMSTFDIASDAFATFKDLLT-----RHKLLSAEFLEQHYDRF 201 (330)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHS----GGGGHHH--HHTTCSSHHHHHHHHHHHHHHHH-----SSHHHHHHHHHHTHHHH
T ss_pred hhhHHHHHHHhhHHHHHHHHcc----HHHHHHH--HHHcCCchHHHHHHHHHHHHHHH-----hCHHHHHHHHHHhHHHH
Confidence 344567777764 77777754 7788888 587653 33344555555443 23556677777777888
Q ss_pred HHHHHHHHHhcccccc
Q 004393 613 IVIYIDHLLTQKNYIR 628 (756)
Q Consensus 613 v~~Yi~~l~~~k~~~~ 628 (756)
...|- .|+.+..+..
T Consensus 202 f~~~~-~LL~s~NYVt 216 (330)
T d1upka_ 202 FSEYE-KLLHSENYVT 216 (330)
T ss_dssp HHHHH-HHTTCSSHHH
T ss_pred HHHHH-HHhcCCchHH
Confidence 88884 6888776543
No 7
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId: 7242]}
Probab=22.46 E-value=1.4e+02 Score=22.10 Aligned_cols=61 Identities=10% Similarity=0.037 Sum_probs=27.4
Q ss_pred CCchhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 004393 25 PDQLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQT-GLESLALSEQMISQLRENFISIERYCQE 90 (756)
Q Consensus 25 p~~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~-gl~~L~~a~~~v~~l~~~~~~i~~~~~~ 90 (756)
|.|++.+..+.++. ..++..|.+. +.+++.+.. |-..+...-.+...|...+..+...+..
T Consensus 32 g~d~~~~~~l~~~h----~~~~~ei~~~-~~~~~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~w~~ 93 (107)
T d2spca_ 32 ANAGGNVEALIKKH----EDFDKAINGH-EQKIAALQTVADQLIAQNHYASNLVDEKRKQVLERWRH 93 (107)
T ss_dssp HCCCSCHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HHHHHHHHHh-HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 45666676654443 3333333333 223333322 2233333334445555555555544444
No 8
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=20.48 E-value=74 Score=21.79 Aligned_cols=32 Identities=13% Similarity=0.208 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhcCCCChHhHHHHHHHHHHH
Q 004393 690 DCPPEVVERLVALRDGIPRKDAKEVLQECKEI 721 (756)
Q Consensus 690 D~s~~~v~~iL~~R~Dl~r~~~~~~l~~~~~~ 721 (756)
.+|...|+.+|.-+++++.+.++.|++.++++
T Consensus 11 gVS~sTVSr~ln~~~~vs~~tr~rV~~~a~~l 42 (57)
T d1qpza1 11 NVSTTTVSHVINKTRFVAEETRNAVWAAIKEL 42 (57)
T ss_dssp TSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCCccCHHHHHHHHHHHHHH
Confidence 78899999999999999999999999888754
No 9
>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB {Bordetella pertussis [TaxId: 520]}
Probab=20.09 E-value=92 Score=22.12 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=36.0
Q ss_pred chhhHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004393 27 QLQFIGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIER 86 (756)
Q Consensus 27 ~L~kl~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~ 86 (756)
.+.+|+.+-+++...--++|.- +..-+.|+..+..+++.+++....+..+..
T Consensus 11 ~l~~LE~IV~~LE~g~l~Lees--------l~~ye~G~~L~~~C~~~L~~ae~ki~~l~~ 62 (68)
T d1vp7a_ 11 ALAELESLVSAMENGTLPLEQS--------LSAYRRGVELARVCQDRLAQAEQQVKVLEG 62 (68)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566777777777777776544 444567888888888888877777766543
No 10
>d2etda1 a.29.9.1 (A:35-183) Hypothetical protein TM0961 {Thermotoga maritima [TaxId: 2336]}
Probab=19.37 E-value=2.2e+02 Score=23.09 Aligned_cols=105 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhchHHHHHHHHHHHH
Q 004393 31 IGDMKADYIARQQANDSQLSTMVAEQIEQAQTGLESLALSEQMISQLRENFISIERYCQECQTLIENHDQIKLLSNARNN 110 (756)
Q Consensus 31 l~~~~~~~~~~~~~id~~Lk~~v~~ql~~~~~gl~~L~~a~~~v~~l~~~~~~i~~~~~~~~~~v~~~~~Ik~l~~~~~n 110 (756)
|=.+++++...-+.||.+|+.. .|-+..-+..+.....-=+++.+.+.+.+.....+...-+....-..++.+-+.
T Consensus 1 Lv~l~~~v~~a~s~Idv~L~rR----~dli~nLv~~vk~y~~~Ek~~l~~v~~~R~~~~~a~~~~~~~~~~~~l~~al~~ 76 (149)
T d2etda1 1 LVSLEQEVQEKYSQIQNQLQRR----ADLIPNLVETVKGYAAHEKEILEEIANARAKLIGAKTPQESAQADAELSSALSR 76 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhhcHhHHHHHHHhhccCChhHHHHHHHHHHHHh
Q 004393 111 LSTTLKDVEGMMSISVEAAEAKDSLGDDKELINTYERLTALDG 153 (756)
Q Consensus 111 l~~~~~~l~~l~~~~~~~~~~~~~l~~~~~Ll~ah~~L~~Le~ 153 (756)
|..+.+....|.. ++++.....+|...|+
T Consensus 77 l~~~~E~yP~Lka--------------~~~~~~l~~~l~~~E~ 105 (149)
T d2etda1 77 LLAIAENYPNLKA--------------DANFRQLMDELAGTEN 105 (149)
T ss_dssp HHHHHTTCHHHHH--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccc--------------hHHHHHHHHHHHHHHH
Done!