Query 004394
Match_columns 756
No_of_seqs 297 out of 1372
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 22:41:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00429 beta-adaptin; Provisi 100.0 2E-115 3E-120 1021.9 63.4 585 9-615 21-611 (746)
2 KOG1061 Vesicle coat complex A 100.0 8E-117 2E-121 992.8 47.2 698 11-748 4-705 (734)
3 KOG1060 Vesicle coat complex A 100.0 1.8E-85 4E-90 730.7 44.0 544 21-601 36-617 (968)
4 KOG1062 Vesicle coat complex A 100.0 4.5E-77 9.7E-82 668.0 50.5 528 19-570 31-598 (866)
5 PF01602 Adaptin_N: Adaptin N 100.0 5.1E-78 1.1E-82 695.1 42.7 510 20-552 4-524 (526)
6 KOG1077 Vesicle coat complex A 100.0 5.7E-75 1.2E-79 639.6 47.9 542 20-586 35-617 (938)
7 COG5096 Vesicle coat complex, 100.0 1.9E-70 4E-75 629.1 41.4 561 20-604 18-624 (757)
8 KOG1059 Vesicle coat complex A 100.0 5.7E-61 1.2E-65 531.3 38.4 508 20-550 36-575 (877)
9 KOG1058 Vesicle coat complex C 100.0 4.2E-46 9.1E-51 414.4 33.2 428 22-482 22-468 (948)
10 KOG1078 Vesicle coat complex C 100.0 1.4E-34 2.9E-39 325.3 39.7 497 20-551 22-531 (865)
11 COG5240 SEC21 Vesicle coat com 100.0 1.1E-30 2.3E-35 284.2 38.8 505 18-552 20-555 (898)
12 PF01602 Adaptin_N: Adaptin N 99.4 6.4E-11 1.4E-15 137.1 25.9 328 70-420 86-425 (526)
13 PTZ00429 beta-adaptin; Provisi 99.3 5.9E-08 1.3E-12 115.8 46.7 494 107-633 75-601 (746)
14 PLN03200 cellulose synthase-in 99.1 9.6E-07 2.1E-11 113.2 44.2 413 136-561 190-732 (2102)
15 PRK09687 putative lyase; Provi 99.1 9.4E-09 2E-13 110.0 20.5 240 100-419 23-262 (280)
16 PRK13800 putative oxidoreducta 99.1 4.5E-08 9.8E-13 120.7 28.2 271 102-432 623-893 (897)
17 PLN03200 cellulose synthase-in 99.0 1.4E-07 2.9E-12 120.7 31.6 427 69-513 410-907 (2102)
18 PF12717 Cnd1: non-SMC mitotic 99.0 2.1E-08 4.4E-13 100.3 16.9 147 113-274 1-159 (178)
19 PRK09687 putative lyase; Provi 99.0 1E-07 2.2E-12 102.0 23.0 255 17-327 20-278 (280)
20 PRK13800 putative oxidoreducta 98.9 1.8E-07 3.9E-12 115.4 27.7 257 114-435 608-864 (897)
21 PF10508 Proteasom_PSMB: Prote 98.9 4.6E-06 1E-10 96.6 35.5 393 69-512 44-463 (503)
22 PF10508 Proteasom_PSMB: Prote 98.6 2.3E-05 4.9E-10 90.9 30.2 332 44-384 54-440 (503)
23 KOG0212 Uncharacterized conser 98.6 7.3E-05 1.6E-09 84.1 31.8 313 116-439 64-407 (675)
24 KOG0166 Karyopherin (importin) 98.6 1.6E-05 3.5E-10 90.1 27.1 291 92-403 77-394 (514)
25 KOG2171 Karyopherin (importin) 98.6 0.00016 3.5E-09 87.3 35.1 426 104-545 8-497 (1075)
26 KOG1060 Vesicle coat complex A 98.4 0.00096 2.1E-08 77.8 33.8 405 109-548 44-490 (968)
27 KOG2171 Karyopherin (importin) 98.3 0.008 1.7E-07 73.2 40.8 527 41-597 18-599 (1075)
28 KOG2023 Nuclear transport rece 98.3 0.00021 4.6E-09 81.7 24.7 353 129-530 84-521 (885)
29 PF13646 HEAT_2: HEAT repeats; 98.2 9.8E-06 2.1E-10 70.5 9.1 86 102-199 1-87 (88)
30 KOG2023 Nuclear transport rece 98.2 0.0018 3.9E-08 74.4 29.0 450 118-586 376-882 (885)
31 KOG1059 Vesicle coat complex A 98.1 0.0034 7.4E-08 72.8 30.7 322 74-419 120-460 (877)
32 KOG0213 Splicing factor 3b, su 98.0 0.0086 1.9E-07 69.6 30.3 418 42-552 650-1139(1172)
33 KOG0212 Uncharacterized conser 97.9 0.012 2.6E-07 66.8 29.8 317 55-384 72-426 (675)
34 KOG0166 Karyopherin (importin) 97.9 0.0033 7.2E-08 71.7 24.4 259 64-330 110-392 (514)
35 KOG1824 TATA-binding protein-i 97.9 0.053 1.1E-06 64.9 34.5 311 12-334 16-405 (1233)
36 PF14764 SPG48: AP-5 complex s 97.9 0.038 8.3E-07 62.4 32.0 127 432-562 291-455 (459)
37 KOG1062 Vesicle coat complex A 97.8 0.012 2.5E-07 69.4 28.1 314 142-475 77-453 (866)
38 KOG0213 Splicing factor 3b, su 97.8 0.16 3.6E-06 59.5 35.8 498 43-553 415-1066(1172)
39 KOG1020 Sister chromatid cohes 97.8 0.1 2.2E-06 65.4 35.5 162 76-251 793-958 (1692)
40 KOG1058 Vesicle coat complex C 97.7 0.0054 1.2E-07 71.5 23.3 379 79-495 41-444 (948)
41 TIGR02270 conserved hypothetic 97.7 0.0029 6.3E-08 71.4 19.8 198 101-332 87-297 (410)
42 KOG1241 Karyopherin (importin) 97.6 0.029 6.4E-07 65.7 27.5 337 77-421 340-731 (859)
43 KOG1078 Vesicle coat complex C 97.6 0.016 3.5E-07 68.1 24.6 295 100-455 205-512 (865)
44 COG1413 FOG: HEAT repeat [Ener 97.6 0.0089 1.9E-07 65.5 21.5 185 65-289 45-241 (335)
45 KOG4224 Armadillo repeat prote 97.5 0.0043 9.4E-08 67.0 17.2 298 68-405 90-408 (550)
46 COG1413 FOG: HEAT repeat [Ener 97.5 0.015 3.2E-07 63.8 22.3 94 99-204 42-135 (335)
47 KOG0414 Chromosome condensatio 97.5 0.5 1.1E-05 58.3 35.4 154 53-207 260-431 (1251)
48 COG5240 SEC21 Vesicle coat com 97.5 0.016 3.4E-07 65.9 21.3 287 86-401 250-554 (898)
49 TIGR02270 conserved hypothetic 97.4 0.013 2.8E-07 66.2 21.1 256 113-436 38-294 (410)
50 KOG1824 TATA-binding protein-i 97.4 0.052 1.1E-06 65.0 26.1 304 95-419 812-1151(1233)
51 PF04826 Arm_2: Armadillo-like 97.4 0.01 2.2E-07 62.7 18.9 230 138-394 15-254 (254)
52 PF05804 KAP: Kinesin-associat 97.3 0.075 1.6E-06 63.7 25.5 364 177-560 253-658 (708)
53 KOG1241 Karyopherin (importin) 97.2 0.33 7.2E-06 57.3 29.4 450 40-532 230-732 (859)
54 cd00020 ARM Armadillo/beta-cat 97.2 0.0012 2.6E-08 60.0 7.8 108 136-251 8-118 (120)
55 KOG0414 Chromosome condensatio 97.2 0.002 4.4E-08 78.1 11.5 142 62-206 918-1066(1251)
56 PF12348 CLASP_N: CLASP N term 97.1 0.0025 5.5E-08 65.8 9.7 184 20-207 3-209 (228)
57 cd00020 ARM Armadillo/beta-cat 97.1 0.0014 3.1E-08 59.5 6.8 102 101-203 8-119 (120)
58 KOG1061 Vesicle coat complex A 97.0 0.11 2.4E-06 61.4 23.3 58 273-335 362-419 (734)
59 PF12717 Cnd1: non-SMC mitotic 97.0 0.024 5.2E-07 56.7 15.8 93 148-254 1-93 (178)
60 KOG1242 Protein containing ada 97.0 0.44 9.5E-06 55.3 27.0 297 57-404 128-446 (569)
61 KOG2259 Uncharacterized conser 96.9 1.2 2.7E-05 52.0 29.6 344 91-444 149-517 (823)
62 PF13646 HEAT_2: HEAT repeats; 96.9 0.0027 5.9E-08 55.0 7.0 57 138-203 2-59 (88)
63 PF12348 CLASP_N: CLASP N term 96.9 0.029 6.2E-07 57.9 15.4 181 144-335 16-210 (228)
64 PF05918 API5: Apoptosis inhib 96.9 1.1 2.3E-05 52.4 29.2 134 65-202 25-160 (556)
65 PF04826 Arm_2: Armadillo-like 96.9 0.02 4.4E-07 60.5 14.2 150 173-332 11-164 (254)
66 COG5098 Chromosome condensatio 96.8 0.077 1.7E-06 61.6 19.1 132 75-207 274-418 (1128)
67 COG5181 HSH155 U2 snRNP splice 96.8 0.77 1.7E-05 53.1 26.2 309 57-419 435-775 (975)
68 KOG1020 Sister chromatid cohes 96.5 2.6 5.7E-05 53.6 30.5 183 67-252 820-1006(1692)
69 COG5098 Chromosome condensatio 96.5 0.02 4.4E-07 66.2 11.9 190 65-271 893-1093(1128)
70 PF05804 KAP: Kinesin-associat 96.5 0.96 2.1E-05 54.5 26.4 331 65-440 292-650 (708)
71 COG5064 SRP1 Karyopherin (impo 96.5 0.086 1.9E-06 56.8 15.5 215 101-327 158-394 (526)
72 KOG2259 Uncharacterized conser 96.5 0.49 1.1E-05 55.2 22.2 307 97-426 118-463 (823)
73 COG5096 Vesicle coat complex, 96.4 2.4 5.3E-05 51.2 28.6 172 103-291 21-196 (757)
74 KOG0168 Putative ubiquitin fus 96.3 0.65 1.4E-05 55.5 22.8 178 102-289 169-363 (1051)
75 PF13513 HEAT_EZ: HEAT-like re 96.2 0.015 3.2E-07 46.2 6.3 49 114-162 1-55 (55)
76 COG5064 SRP1 Karyopherin (impo 96.2 0.29 6.4E-06 52.9 17.3 282 146-438 126-443 (526)
77 KOG1077 Vesicle coat complex A 96.1 4.4 9.5E-05 48.0 32.3 338 80-441 60-436 (938)
78 cd00256 VATPase_H VATPase_H, r 96.1 1 2.2E-05 51.2 22.4 331 175-515 54-426 (429)
79 KOG1525 Sister chromatid cohes 96.1 1.8 3.8E-05 55.2 26.2 242 307-552 187-472 (1266)
80 COG5181 HSH155 U2 snRNP splice 96.0 1.1 2.4E-05 52.0 22.0 101 101-202 282-385 (975)
81 KOG1240 Protein kinase contain 96.0 1.5 3.3E-05 54.4 24.1 263 99-382 461-777 (1431)
82 KOG1240 Protein kinase contain 95.9 0.13 2.8E-06 63.3 15.1 231 42-289 477-724 (1431)
83 PF02985 HEAT: HEAT repeat; I 95.9 0.011 2.3E-07 41.6 3.8 30 136-165 1-30 (31)
84 COG5215 KAP95 Karyopherin (imp 95.7 4.8 0.0001 46.6 25.2 83 88-170 353-443 (858)
85 KOG0946 ER-Golgi vesicle-tethe 95.5 8.1 0.00018 46.4 29.1 61 145-206 33-94 (970)
86 PF12755 Vac14_Fab1_bd: Vacuol 95.3 0.052 1.1E-06 48.9 6.8 66 129-195 21-88 (97)
87 KOG1242 Protein containing ada 95.1 8.9 0.00019 44.8 26.8 383 145-547 27-439 (569)
88 KOG0915 Uncharacterized conser 94.9 5.5 0.00012 50.9 24.2 368 136-557 957-1350(1702)
89 KOG1820 Microtubule-associated 94.8 0.8 1.7E-05 55.9 16.9 202 129-340 247-453 (815)
90 KOG0211 Protein phosphatase 2A 94.7 14 0.00031 45.0 27.5 417 84-551 220-663 (759)
91 KOG2956 CLIP-associating prote 94.4 0.66 1.4E-05 52.3 13.7 166 9-181 272-490 (516)
92 PF14500 MMS19_N: Dos2-interac 94.4 4.1 8.8E-05 43.5 19.3 223 179-416 4-253 (262)
93 smart00638 LPD_N Lipoprotein N 94.4 0.4 8.6E-06 56.8 13.0 95 102-202 448-543 (574)
94 PF12719 Cnd3: Nuclear condens 94.3 1.2 2.6E-05 48.2 15.6 153 372-550 25-183 (298)
95 KOG4224 Armadillo repeat prote 94.3 3.4 7.4E-05 45.4 18.2 251 67-328 171-443 (550)
96 KOG1248 Uncharacterized conser 94.2 14 0.00031 46.3 25.3 207 236-443 628-861 (1176)
97 KOG1248 Uncharacterized conser 93.8 7.4 0.00016 48.6 22.0 265 53-330 601-897 (1176)
98 KOG1517 Guanine nucleotide bin 93.8 0.57 1.2E-05 57.1 12.5 136 64-205 513-672 (1387)
99 PF10363 DUF2435: Protein of u 93.5 0.33 7.2E-06 43.3 7.6 69 102-170 5-78 (92)
100 PF13513 HEAT_EZ: HEAT-like re 93.4 0.033 7.1E-07 44.2 1.0 53 149-202 1-55 (55)
101 PF12460 MMS19_C: RNAPII trans 93.4 5.8 0.00012 45.1 19.5 211 78-294 163-398 (415)
102 PF05918 API5: Apoptosis inhib 93.4 0.6 1.3E-05 54.5 11.5 142 113-272 35-189 (556)
103 KOG1822 Uncharacterized conser 93.3 5.4 0.00012 52.0 20.2 221 100-333 876-1129(2067)
104 PF13251 DUF4042: Domain of un 93.3 4.9 0.00011 40.5 16.4 152 151-334 2-177 (182)
105 PF12830 Nipped-B_C: Sister ch 93.0 0.92 2E-05 45.8 11.1 102 102-204 10-122 (187)
106 PF12719 Cnd3: Nuclear condens 92.9 8.8 0.00019 41.5 19.3 104 99-203 26-142 (298)
107 PF08167 RIX1: rRNA processing 92.8 1.3 2.7E-05 43.9 11.4 121 300-445 23-150 (165)
108 PF10363 DUF2435: Protein of u 92.2 0.67 1.5E-05 41.3 7.8 70 137-207 5-75 (92)
109 KOG2062 26S proteasome regulat 92.2 5.6 0.00012 47.4 16.9 139 52-204 473-618 (929)
110 KOG0567 HEAT repeat-containing 91.3 0.93 2E-05 47.7 8.7 91 101-202 188-278 (289)
111 KOG1949 Uncharacterized conser 91.3 3.5 7.6E-05 48.7 14.0 138 100-251 174-329 (1005)
112 KOG0915 Uncharacterized conser 91.2 58 0.0013 42.3 31.2 271 133-418 996-1282(1702)
113 PF08713 DNA_alkylation: DNA a 91.2 0.79 1.7E-05 46.6 8.2 131 68-208 56-188 (213)
114 KOG0567 HEAT repeat-containing 90.9 3.7 8.1E-05 43.4 12.5 58 101-162 219-278 (289)
115 KOG0211 Protein phosphatase 2A 90.9 7.9 0.00017 47.2 17.1 257 61-331 396-664 (759)
116 KOG1949 Uncharacterized conser 90.8 2.4 5.2E-05 50.0 12.0 150 128-289 166-330 (1005)
117 KOG0413 Uncharacterized conser 90.4 23 0.0005 43.7 19.8 104 100-204 576-685 (1529)
118 KOG1991 Nuclear transport rece 89.9 60 0.0013 40.3 31.6 184 138-332 8-212 (1010)
119 PF01347 Vitellogenin_N: Lipop 89.4 0.56 1.2E-05 55.9 6.1 97 100-202 490-587 (618)
120 KOG2160 Armadillo/beta-catenin 89.1 13 0.00027 41.0 15.4 140 378-517 129-285 (342)
121 smart00638 LPD_N Lipoprotein N 88.8 49 0.0011 39.1 21.8 242 42-365 288-543 (574)
122 PF14664 RICTOR_N: Rapamycin-i 88.6 29 0.00064 38.9 18.5 128 74-204 36-176 (371)
123 PF02854 MIF4G: MIF4G domain; 88.4 11 0.00023 37.5 13.8 148 358-514 3-163 (209)
124 KOG2025 Chromosome condensatio 87.6 72 0.0016 38.4 34.3 144 54-199 29-188 (892)
125 KOG1525 Sister chromatid cohes 87.6 31 0.00066 44.5 19.5 160 262-422 260-437 (1266)
126 smart00543 MIF4G Middle domain 87.4 17 0.00037 36.0 14.5 139 362-515 8-156 (200)
127 PF14664 RICTOR_N: Rapamycin-i 87.4 51 0.0011 37.0 19.5 206 309-517 33-272 (371)
128 KOG2160 Armadillo/beta-catenin 87.3 11 0.00023 41.6 13.5 108 140-254 129-241 (342)
129 PF01603 B56: Protein phosphat 87.3 31 0.00068 39.2 18.0 174 373-547 133-321 (409)
130 COG5218 YCG1 Chromosome conden 86.6 75 0.0016 37.5 23.2 121 75-197 61-192 (885)
131 KOG1293 Proteins containing ar 85.1 47 0.001 39.4 17.8 176 107-291 338-534 (678)
132 KOG4653 Uncharacterized conser 85.0 23 0.0005 43.2 15.5 71 135-206 727-799 (982)
133 KOG4413 26S proteasome regulat 84.7 67 0.0015 35.3 22.0 239 44-291 63-334 (524)
134 KOG1943 Beta-tubulin folding c 84.4 1.2E+02 0.0027 38.1 29.6 75 129-205 335-410 (1133)
135 KOG1293 Proteins containing ar 84.3 33 0.00072 40.7 16.1 135 112-254 389-534 (678)
136 KOG2025 Chromosome condensatio 84.1 1.1E+02 0.0023 37.1 25.7 120 40-160 58-189 (892)
137 PF11935 DUF3453: Domain of un 83.1 18 0.00039 38.0 12.7 148 143-312 1-163 (239)
138 PF12755 Vac14_Fab1_bd: Vacuol 83.0 5.1 0.00011 36.1 7.3 69 482-551 25-96 (97)
139 PF02985 HEAT: HEAT repeat; I 82.8 2.1 4.5E-05 29.8 3.8 28 176-204 2-29 (31)
140 PF01347 Vitellogenin_N: Lipop 82.4 83 0.0018 37.5 19.6 188 78-291 379-590 (618)
141 KOG2933 Uncharacterized conser 81.9 20 0.00043 38.9 12.2 154 81-289 71-233 (334)
142 PF12460 MMS19_C: RNAPII trans 81.4 1E+02 0.0022 35.0 24.5 219 115-343 166-406 (415)
143 PF05004 IFRD: Interferon-rela 81.1 46 0.00099 36.4 15.3 62 102-163 88-159 (309)
144 KOG1991 Nuclear transport rece 80.8 1.6E+02 0.0035 36.8 29.5 128 112-246 430-569 (1010)
145 KOG2032 Uncharacterized conser 80.6 1.2E+02 0.0026 35.2 21.3 108 100-208 255-375 (533)
146 KOG0168 Putative ubiquitin fus 80.5 36 0.00077 41.6 14.7 174 226-404 169-366 (1051)
147 PF12830 Nipped-B_C: Sister ch 80.4 31 0.00067 34.8 12.8 72 131-208 4-78 (187)
148 KOG2062 26S proteasome regulat 80.2 5.9 0.00013 47.2 8.2 82 109-199 564-648 (929)
149 KOG0413 Uncharacterized conser 79.6 6.2 0.00013 48.2 8.3 123 82-206 950-1075(1529)
150 KOG2213 Apoptosis inhibitor 5/ 79.6 1.1E+02 0.0025 34.3 25.6 78 67-145 29-106 (460)
151 KOG1243 Protein kinase [Genera 79.1 9.8 0.00021 45.2 9.6 157 43-201 290-473 (690)
152 PF11698 V-ATPase_H_C: V-ATPas 78.4 7.1 0.00015 36.6 6.7 72 260-332 42-116 (119)
153 KOG2956 CLIP-associating prote 78.3 48 0.001 38.0 14.2 156 118-289 307-476 (516)
154 PF11698 V-ATPase_H_C: V-ATPas 77.9 5 0.00011 37.6 5.6 52 113-164 57-115 (119)
155 KOG1992 Nuclear export recepto 77.9 1.8E+02 0.0039 35.8 28.4 164 134-310 5-184 (960)
156 PF08506 Cse1: Cse1; InterPro 77.5 4.9 0.00011 45.0 6.5 62 98-159 303-370 (370)
157 KOG4413 26S proteasome regulat 77.3 1.2E+02 0.0026 33.4 23.8 153 130-289 77-242 (524)
158 cd03569 VHS_Hrs_Vps27p VHS dom 76.6 20 0.00043 34.6 9.6 80 87-166 28-116 (142)
159 KOG1820 Microtubule-associated 75.6 76 0.0016 39.3 16.2 164 41-205 267-444 (815)
160 KOG4500 Rho/Rac GTPase guanine 75.6 35 0.00075 38.7 12.1 234 98-339 267-527 (604)
161 cd06561 AlkD_like A new struct 74.7 35 0.00076 34.0 11.4 66 138-207 108-173 (197)
162 PF03224 V-ATPase_H_N: V-ATPas 74.5 60 0.0013 35.3 13.9 142 186-329 68-225 (312)
163 PF08713 DNA_alkylation: DNA a 74.2 2.5 5.4E-05 42.9 2.9 68 103-170 123-190 (213)
164 cd03561 VHS VHS domain family; 73.4 23 0.0005 33.5 9.1 86 83-168 20-116 (133)
165 PF08167 RIX1: rRNA processing 73.3 25 0.00053 34.7 9.6 76 129-204 19-97 (165)
166 PF12765 Cohesin_HEAT: HEAT re 72.5 3.3 7.1E-05 31.3 2.4 37 160-197 4-40 (42)
167 COG5116 RPN2 26S proteasome re 72.1 69 0.0015 37.6 13.6 135 55-204 473-615 (926)
168 PF00790 VHS: VHS domain; Int 72.0 19 0.0004 34.5 8.2 84 82-165 24-119 (140)
169 KOG2973 Uncharacterized conser 71.4 64 0.0014 35.2 12.4 64 138-205 6-72 (353)
170 COG5218 YCG1 Chromosome conden 71.2 2.3E+02 0.0049 33.7 27.1 122 82-206 31-163 (885)
171 cd06561 AlkD_like A new struct 71.0 3.6 7.8E-05 41.2 3.1 67 104-170 109-176 (197)
172 PF12074 DUF3554: Domain of un 70.7 1.3E+02 0.0028 33.1 15.6 53 112-164 35-90 (339)
173 KOG4535 HEAT and armadillo rep 70.4 77 0.0017 36.5 13.3 160 146-333 7-181 (728)
174 KOG0946 ER-Golgi vesicle-tethe 70.3 92 0.002 38.0 14.5 138 305-442 64-245 (970)
175 PF14631 FancD2: Fanconi anaem 69.9 2.4E+02 0.0052 37.5 19.6 178 100-289 399-586 (1426)
176 KOG4653 Uncharacterized conser 68.2 2.4E+02 0.0052 35.0 17.4 66 105-170 732-803 (982)
177 PF12825 DUF3818: Domain of un 68.2 89 0.0019 34.7 13.4 200 237-443 89-307 (341)
178 KOG2274 Predicted importin 9 [ 68.2 3.1E+02 0.0068 34.2 31.3 98 236-335 462-563 (1005)
179 cd03568 VHS_STAM VHS domain fa 67.2 48 0.001 32.0 9.9 81 85-165 22-111 (144)
180 PF01603 B56: Protein phosphat 67.2 1.5E+02 0.0033 33.7 15.5 73 132-204 130-204 (409)
181 KOG1943 Beta-tubulin folding c 67.1 3.5E+02 0.0076 34.4 29.6 216 95-331 374-611 (1133)
182 KOG1967 DNA repair/transcripti 65.9 68 0.0015 39.6 12.5 135 296-430 861-1016(1030)
183 KOG1967 DNA repair/transcripti 65.5 3.5E+02 0.0077 33.8 19.5 93 313-405 181-287 (1030)
184 KOG2022 Nuclear transport rece 65.3 3.5E+02 0.0076 33.7 19.1 84 87-170 536-626 (982)
185 smart00288 VHS Domain present 65.0 50 0.0011 31.3 9.4 84 83-166 20-113 (133)
186 PF03224 V-ATPase_H_N: V-ATPas 64.6 2.1E+02 0.0046 31.0 15.6 96 104-204 79-179 (312)
187 PF05004 IFRD: Interferon-rela 64.3 2.2E+02 0.0048 31.1 20.4 185 139-333 47-259 (309)
188 PF12765 Cohesin_HEAT: HEAT re 63.7 7.8 0.00017 29.3 2.9 25 134-158 17-41 (42)
189 PF00514 Arm: Armadillo/beta-c 63.5 12 0.00027 27.5 4.0 28 136-163 13-40 (41)
190 KOG2038 CAATT-binding transcri 61.0 3.9E+02 0.0085 32.8 18.0 74 132-208 301-374 (988)
191 PF14500 MMS19_N: Dos2-interac 60.4 2.4E+02 0.0051 30.1 15.4 203 236-442 11-241 (262)
192 PF12530 DUF3730: Protein of u 60.4 2.2E+02 0.0047 29.7 17.2 158 111-286 12-185 (234)
193 PF08568 Kinetochor_Ybp2: Unch 60.4 2.5E+02 0.0054 33.9 16.4 68 132-203 439-506 (633)
194 PF11864 DUF3384: Domain of un 59.1 3.4E+02 0.0073 31.4 28.2 379 117-512 7-464 (464)
195 PF13251 DUF4042: Domain of un 58.9 27 0.00058 35.2 6.6 123 79-205 18-175 (182)
196 PF05536 Neurochondrin: Neuroc 58.9 3.7E+02 0.0081 31.9 30.8 178 148-334 69-264 (543)
197 KOG2759 Vacuolar H+-ATPase V1 58.6 18 0.00039 40.7 5.7 72 260-332 365-439 (442)
198 COG5116 RPN2 26S proteasome re 57.8 1.5E+02 0.0032 35.1 12.7 151 47-208 501-655 (926)
199 PF12231 Rif1_N: Rap1-interact 57.7 3.2E+02 0.0068 30.7 23.3 135 73-208 3-167 (372)
200 PF13001 Ecm29: Proteasome sta 57.5 1.1E+02 0.0024 35.8 12.4 171 73-292 295-490 (501)
201 KOG1222 Kinesin associated pro 57.3 3.7E+02 0.0079 31.3 27.1 110 76-203 299-412 (791)
202 PF05536 Neurochondrin: Neuroc 55.3 3.9E+02 0.0085 31.7 16.5 94 308-401 11-127 (543)
203 KOG2973 Uncharacterized conser 53.3 3.4E+02 0.0075 29.8 18.7 61 103-165 6-72 (353)
204 KOG2274 Predicted importin 9 [ 53.2 5.5E+02 0.012 32.2 25.9 236 117-368 427-690 (1005)
205 KOG2051 Nonsense-mediated mRNA 51.9 5.8E+02 0.012 32.5 17.1 104 463-568 520-630 (1128)
206 cd00872 PI3Ka_I Phosphoinositi 51.0 1.7E+02 0.0036 29.3 10.7 113 24-146 2-116 (171)
207 PF09759 Atx10homo_assoc: Spin 49.5 64 0.0014 29.4 6.8 61 502-563 3-70 (102)
208 PF11707 Npa1: Ribosome 60S bi 49.1 3.9E+02 0.0084 29.4 14.4 259 60-351 24-320 (330)
209 PF10521 DUF2454: Protein of u 48.8 1.5E+02 0.0032 31.9 10.8 75 129-204 113-203 (282)
210 PF10274 ParcG: Parkin co-regu 48.4 1.2E+02 0.0026 30.7 9.2 72 135-208 38-113 (183)
211 KOG2137 Protein kinase [Signal 48.2 3.6E+02 0.0078 32.8 14.3 196 73-289 283-495 (700)
212 PF00514 Arm: Armadillo/beta-c 48.0 25 0.00055 25.8 3.4 31 172-203 10-40 (41)
213 cd03567 VHS_GGA VHS domain fam 47.9 1.1E+02 0.0024 29.4 8.7 51 155-208 21-71 (139)
214 cd03568 VHS_STAM VHS domain fa 47.4 2.1E+02 0.0046 27.6 10.6 93 236-332 15-111 (144)
215 KOG2213 Apoptosis inhibitor 5/ 46.3 4.9E+02 0.011 29.5 16.4 41 343-383 66-106 (460)
216 PF08389 Xpo1: Exportin 1-like 46.1 2.5E+02 0.0054 26.0 11.2 51 149-203 2-53 (148)
217 cd03567 VHS_GGA VHS domain fam 45.9 1.5E+02 0.0032 28.6 9.1 81 87-167 25-119 (139)
218 KOG4500 Rho/Rac GTPase guanine 45.8 3.7E+02 0.008 30.9 13.1 154 50-205 295-476 (604)
219 KOG4524 Uncharacterized conser 45.0 1.4E+02 0.003 37.3 10.5 75 131-207 799-879 (1014)
220 PF00790 VHS: VHS domain; Int 44.6 1.4E+02 0.003 28.4 8.9 89 154-251 24-116 (140)
221 PF11701 UNC45-central: Myosin 44.6 83 0.0018 30.7 7.4 119 146-272 16-139 (157)
222 KOG2011 Sister chromatid cohes 44.2 1.7E+02 0.0036 37.2 11.3 109 94-202 276-397 (1048)
223 KOG2005 26S proteasome regulat 43.8 99 0.0021 37.0 8.7 83 114-204 622-704 (878)
224 PF10274 ParcG: Parkin co-regu 43.5 31 0.00068 34.8 4.2 49 132-182 77-125 (183)
225 PF11865 DUF3385: Domain of un 43.0 2.3E+02 0.0051 27.7 10.3 34 298-331 124-157 (160)
226 cd03572 ENTH_epsin_related ENT 43.0 38 0.00082 31.9 4.5 42 129-170 32-73 (122)
227 PF14676 FANCI_S2: FANCI solen 43.0 1.6E+02 0.0035 28.9 9.1 73 470-544 81-153 (158)
228 PF03130 HEAT_PBS: PBS lyase H 42.3 39 0.00086 22.7 3.3 25 116-140 1-25 (27)
229 KOG1243 Protein kinase [Genera 41.2 1E+02 0.0022 37.1 8.5 104 100-205 330-438 (690)
230 KOG2199 Signal transducing ada 40.7 1E+02 0.0023 34.5 7.9 78 82-159 27-113 (462)
231 PF13981 SopA: SopA-like centr 39.5 1.6E+02 0.0034 28.3 8.2 52 499-550 67-121 (135)
232 cd00870 PI3Ka_III Phosphoinosi 39.5 2.4E+02 0.0053 27.9 9.8 95 42-145 28-122 (166)
233 PF08506 Cse1: Cse1; InterPro 39.4 1.5E+02 0.0032 33.3 9.3 126 153-281 228-366 (370)
234 PF08569 Mo25: Mo25-like; Int 39.4 5.7E+02 0.012 28.3 24.2 153 179-399 169-332 (335)
235 KOG0891 DNA-dependent protein 38.9 6.6E+02 0.014 35.2 16.3 285 105-405 450-766 (2341)
236 cd03561 VHS VHS domain family; 38.2 2.3E+02 0.005 26.7 9.2 77 256-332 32-113 (133)
237 smart00185 ARM Armadillo/beta- 37.3 47 0.001 23.6 3.4 27 136-162 13-39 (41)
238 PF07749 ERp29: Endoplasmic re 37.1 1.7E+02 0.0036 26.2 7.5 57 380-438 12-73 (95)
239 KOG2759 Vacuolar H+-ATPase V1 36.7 7E+02 0.015 28.6 29.1 359 111-514 61-438 (442)
240 COG5369 Uncharacterized conser 36.6 1.1E+02 0.0024 35.7 7.6 141 135-282 431-586 (743)
241 PLN03076 ARF guanine nucleotid 34.8 2.7E+02 0.0059 37.7 11.8 139 175-316 1345-1516(1780)
242 smart00567 EZ_HEAT E-Z type HE 34.6 52 0.0011 22.3 3.1 23 115-137 2-24 (30)
243 PF08623 TIP120: TATA-binding 34.1 55 0.0012 32.6 4.3 58 148-207 40-97 (169)
244 cd03572 ENTH_epsin_related ENT 33.8 2E+02 0.0042 27.2 7.7 60 231-290 7-67 (122)
245 KOG1517 Guanine nucleotide bin 32.6 3.4E+02 0.0074 34.5 11.1 79 49-127 578-669 (1387)
246 cd03569 VHS_Hrs_Vps27p VHS dom 32.5 3.8E+02 0.0083 25.7 9.7 50 155-207 24-73 (142)
247 PF10521 DUF2454: Protein of u 32.2 3.1E+02 0.0066 29.4 10.1 38 298-335 115-152 (282)
248 KOG2149 Uncharacterized conser 32.1 2.1E+02 0.0045 32.4 8.7 63 140-203 63-127 (393)
249 KOG3397 Acetyltransferases [Ge 31.9 43 0.00093 33.3 3.0 23 716-738 196-222 (225)
250 KOG2153 Protein involved in th 31.6 9.9E+02 0.022 28.9 14.3 57 233-289 333-391 (704)
251 COG5215 KAP95 Karyopherin (imp 31.6 9.7E+02 0.021 28.7 37.4 449 95-568 55-591 (858)
252 PF04388 Hamartin: Hamartin pr 31.3 2E+02 0.0042 35.1 9.1 84 119-208 55-144 (668)
253 KOG0889 Histone acetyltransfer 30.8 2E+03 0.043 32.0 26.1 67 100-166 927-1015(3550)
254 COG5231 VMA13 Vacuolar H+-ATPa 30.8 94 0.002 34.1 5.6 70 260-331 355-428 (432)
255 smart00288 VHS Domain present 30.1 2.8E+02 0.0061 26.2 8.3 50 156-208 21-70 (133)
256 PF08389 Xpo1: Exportin 1-like 30.0 2.5E+02 0.0053 26.1 8.0 114 58-188 21-139 (148)
257 PF12397 U3snoRNP10: U3 small 29.7 4.4E+02 0.0095 24.1 9.7 73 131-206 2-76 (121)
258 PF09324 DUF1981: Domain of un 29.2 2E+02 0.0043 25.1 6.6 67 483-549 16-85 (86)
259 cd08050 TAF6 TATA Binding Prot 29.2 6E+02 0.013 28.2 11.9 75 127-203 250-339 (343)
260 PF14961 BROMI: Broad-minded p 29.0 8.2E+02 0.018 31.8 13.8 179 376-554 26-234 (1296)
261 cd00197 VHS_ENTH_ANTH VHS, ENT 28.8 2.9E+02 0.0063 25.1 8.0 48 80-127 17-64 (115)
262 PF00613 PI3Ka: Phosphoinositi 28.7 3E+02 0.0065 27.7 8.7 94 43-145 28-121 (184)
263 KOG4535 HEAT and armadillo rep 28.7 41 0.00088 38.6 2.6 127 75-204 24-179 (728)
264 cd07064 AlkD_like_1 A new stru 27.8 6.7E+02 0.014 25.6 13.5 130 69-208 52-183 (208)
265 COG5110 RPN1 26S proteasome re 27.2 2.1E+02 0.0046 33.6 7.8 87 113-204 617-705 (881)
266 COG5593 Nucleic-acid-binding p 26.7 9.2E+02 0.02 28.5 12.6 85 318-405 173-260 (821)
267 KOG2085 Serine/threonine prote 26.7 6E+02 0.013 29.0 11.0 80 468-548 282-366 (457)
268 cd00864 PI3Ka Phosphoinositide 26.5 6E+02 0.013 24.7 11.3 95 42-145 21-115 (152)
269 cd00871 PI4Ka Phosphoinositide 25.5 1.2E+02 0.0026 30.5 5.0 59 90-152 65-123 (175)
270 smart00145 PI3Ka Phosphoinosit 25.4 7.1E+02 0.015 25.1 10.8 96 43-146 26-121 (184)
271 cd00197 VHS_ENTH_ANTH VHS, ENT 25.1 3.1E+02 0.0068 24.8 7.5 53 153-208 18-70 (115)
272 PF14676 FANCI_S2: FANCI solen 25.0 2.3E+02 0.005 27.9 6.8 110 357-468 37-152 (158)
273 smart00185 ARM Armadillo/beta- 24.7 1E+02 0.0022 21.8 3.4 30 173-203 11-40 (41)
274 PF06685 DUF1186: Protein of u 24.3 8.8E+02 0.019 25.8 12.6 153 370-534 28-200 (249)
275 PHA03159 hypothetical protein; 24.1 83 0.0018 29.7 3.3 45 124-170 1-45 (160)
276 PF04858 TH1: TH1 protein; In 23.8 1.2E+03 0.026 27.9 13.7 98 374-474 199-296 (584)
277 KOG2286 Exocyst complex subuni 23.6 5E+02 0.011 31.6 10.4 60 406-466 583-642 (667)
278 PF04388 Hamartin: Hamartin pr 23.3 8.5E+02 0.018 29.7 12.6 148 374-532 5-165 (668)
279 PF07539 DRIM: Down-regulated 23.3 1.3E+02 0.0027 29.1 4.6 28 134-161 16-43 (141)
280 PF08563 P53_TAD: P53 transact 23.1 41 0.00089 22.7 0.8 20 722-741 5-24 (25)
281 PF13929 mRNA_stabil: mRNA sta 22.5 3.2E+02 0.007 29.7 7.8 178 42-243 27-222 (292)
282 cd00238 ERp29c ERp29 and ERp38 22.4 4E+02 0.0086 23.8 7.2 58 380-439 10-72 (93)
283 KOG2137 Protein kinase [Signal 22.3 1.5E+03 0.032 27.7 18.3 139 261-405 349-499 (700)
284 PF11865 DUF3385: Domain of un 21.9 4.6E+02 0.01 25.6 8.4 35 93-130 7-41 (160)
285 KOG2140 Uncharacterized conser 21.8 5.4E+02 0.012 30.3 9.7 23 358-380 167-189 (739)
286 PF11935 DUF3453: Domain of un 21.7 9.3E+02 0.02 25.1 15.2 143 270-421 2-165 (239)
287 COG5101 CRM1 Importin beta-rel 21.4 1.5E+03 0.033 27.5 16.4 234 263-512 1-259 (1053)
288 PF12530 DUF3730: Protein of u 21.3 9.3E+02 0.02 25.0 18.5 121 81-205 20-152 (234)
289 PF12397 U3snoRNP10: U3 small 21.3 6.3E+02 0.014 23.0 10.6 67 98-166 4-76 (121)
290 KOG1070 rRNA processing protei 20.0 2.2E+03 0.047 28.8 17.4 97 315-416 1454-1558(1710)
No 1
>PTZ00429 beta-adaptin; Provisional
Probab=100.00 E-value=1.5e-115 Score=1021.92 Aligned_cols=585 Identities=29% Similarity=0.474 Sum_probs=537.4
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHH
Q 004394 9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVG 88 (756)
Q Consensus 9 ~~~~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~ 88 (756)
+.+.-|..++|||++|||++|++ .+..+|++++||+|++|++|+|||++|++|+++++|+|+++|||||||++
T Consensus 21 ~~~~~f~~~~kge~~ELr~~L~s-------~~~~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~ 93 (746)
T PTZ00429 21 TGSKYFAQTRRGEGAELQNDLNG-------TDSYRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVL 93 (746)
T ss_pred CccccccccccchHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45567778899999999999986 34578999999999999999999999999999999999999999999999
Q ss_pred HccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC
Q 004394 89 NYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (756)
Q Consensus 89 ~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~ 168 (756)
+|++.+||+++|+||+|+||++|+||++||+|||+||+|+.+++++++.++|++++.|++|||||+|++|++|+|+.+|+
T Consensus 94 ~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe 173 (746)
T PTZ00429 94 STARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ 173 (746)
T ss_pred HHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHH
Q 004394 169 TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (756)
Q Consensus 169 ~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL 248 (756)
.+.+.+|.+.|.++ ++|+|++|++||+.+|.+|...+|+. +. +.++++++|++.+++++||+|+.||++|
T Consensus 174 lv~~~~~~~~L~~L-L~D~dp~Vv~nAl~aL~eI~~~~~~~--------l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL 243 (746)
T PTZ00429 174 LFYQQDFKKDLVEL-LNDNNPVVASNAAAIVCEVNDYGSEK--------IE-SSNEWVNRLVYHLPECNEWGQLYILELL 243 (746)
T ss_pred cccccchHHHHHHH-hcCCCccHHHHHHHHHHHHHHhCchh--------hH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 98778999999997 79999999999999999998766532 22 2356799999999999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 004394 249 AKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (756)
Q Consensus 249 ~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~-~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~ 327 (756)
.+|.|.+.++++++++.+.++|+|+|+||+++|+|+|+++.... ++...+++.|++.+|++|++ +++|+||++|++|.
T Consensus 244 ~~y~P~~~~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~s-s~~eiqyvaLr~I~ 322 (746)
T PTZ00429 244 AAQRPSDKESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLSR-RDAETQYIVCKNIH 322 (746)
T ss_pred HhcCCCCcHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhC-CCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998653 45667788899999998864 68999999999999
Q ss_pred HHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh
Q 004394 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV 407 (756)
Q Consensus 328 ~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~ 407 (756)
.|++++|.+|++|++.|||+++||.|||++|||||+.|||++|+.+|++||.+|+++.|.+|++++|++||+||.|+|+.
T Consensus 323 ~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~ 402 (746)
T PTZ00429 323 ALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSV 402 (746)
T ss_pred HHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHH-hhhccCCchhHHHHHHhHhccCCCCCCChHHH
Q 004394 408 -NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS-ISSQNVQEPKAKAALIWMLGEYSQDMQDAPYI 485 (756)
Q Consensus 408 -~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~-l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~i 485 (756)
.|||++|+++++.+.+++ .|++.++++|+|+||+.+ .+..+.. +..+.+++|++|++++||+|||++.+++++++
T Consensus 403 a~~cV~~Ll~ll~~~~~~v-~e~i~vik~IlrkyP~~~--il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~ 479 (746)
T PTZ00429 403 APDCANLLLQIVDRRPELL-PQVVTAAKDIVRKYPELL--MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDI 479 (746)
T ss_pred HHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHHCccHH--HHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHH
Confidence 899999999999877765 588999999999999863 3333332 22367899999999999999999999999999
Q ss_pred HHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhc-CCChHHHhHHHHHHHHhcCCH--HHHHhhcC
Q 004394 486 LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA-DFHQDVHDRALFYHRLLQYNV--SVAERVVN 562 (756)
Q Consensus 486 L~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~-d~d~dVrdRA~~Y~rLL~~~~--e~a~~vv~ 562 (756)
|+.++++|.+|+ .+||+++||+++|+|+++|++++++++++|+.+++ +.|+||||||++|||||+.++ +.|++||+
T Consensus 480 L~~~i~~f~~E~-~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~ 558 (746)
T PTZ00429 480 IQRFIDTIMEHE-QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVH 558 (746)
T ss_pred HHHHHhhhccCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHc
Confidence 999999999999 99999999999999999999999999999998865 579999999999999999874 66899999
Q ss_pred CCCCCCcccccCCChHHHHHHHhhcCcchhhccCCCCccccCCCCCCcccccc
Q 004394 563 PPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDE 615 (756)
Q Consensus 563 ~~~p~i~~~~~~~~~~~~~~l~~~~~tls~vy~kp~~~f~~~~~~~~~~~~~~ 615 (756)
+++|++....+..+++++++|+.+|||+|+||+||++.|+++.+.+..+..++
T Consensus 559 ~~~~~i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~~~~~~~~~~~ 611 (746)
T PTZ00429 559 GQMVPVNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPYGLADVELDEE 611 (746)
T ss_pred CCCCCCCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCchhccccccccc
Confidence 99999876555567789999999999999999999999999998887776554
No 2
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-117 Score=992.79 Aligned_cols=698 Identities=39% Similarity=0.592 Sum_probs=611.8
Q ss_pred CCCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHc
Q 004394 11 PSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (756)
Q Consensus 11 ~~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~ 90 (756)
.+-|...+|+|+.|+|++|.+ ...++|++++||+|+.|+.|+|||.+|++|+++++|.|+++|||+|||+++|
T Consensus 4 ~k~F~~~~k~ei~elks~l~s-------~~~~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nY 76 (734)
T KOG1061|consen 4 SKYFSTDKKGEIPELKSQLNS-------QSKEKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNY 76 (734)
T ss_pred ccccCcchhhhchHHHHHhhh-------hhhhhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHh
Confidence 456777789999999999954 2237899999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 91 ~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
+..+|+++++++|+|.||+.|+||++|++|+|+||+++++.+.+++..+++++++|.+|||||+|+.|+.|+|+.+++.+
T Consensus 77 a~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~ 156 (734)
T KOG1061|consen 77 AKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLV 156 (734)
T ss_pred hccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 004394 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (756)
Q Consensus 171 ~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~ 250 (756)
.+.++++.|+++ +.|.||+|++||+++|.||.+.+++.. ...+.+++++++++++++|+||+|+.||+.++.
T Consensus 157 ~~~gl~~~L~~l-l~D~~p~VVAnAlaaL~eI~e~~~~~~-------~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 157 EDSGLVDALKDL-LSDSNPMVVANALAALSEIHESHPSVN-------LLELNPQLINKLLEALNECTEWGQIFILDCLAE 228 (734)
T ss_pred cccchhHHHHHH-hcCCCchHHHHHHHHHHHHHHhCCCCC-------cccccHHHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 999999999998 689999999999999999998776421 134667889999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 004394 251 YVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (756)
Q Consensus 251 y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~ 330 (756)
|.|.++.+++++++++.++|+|+|++|++.++|+++++.....+++..+++|+.+||++++++.+ +++|++|++++.++
T Consensus 229 y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil 307 (734)
T KOG1061|consen 229 YVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLIL 307 (734)
T ss_pred cCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHH
Confidence 99999999999999999999999999999999999999887777778889999999999998754 99999999999999
Q ss_pred hhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHH
Q 004394 331 MRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAI 410 (756)
Q Consensus 331 ~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~ 410 (756)
++.|++|..++++|||+||||+|||..|||+++.++|..|+.+|+.||.+|+++.|.+|++++|++||+||.|+++.+.|
T Consensus 308 ~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~~~c 387 (734)
T KOG1061|consen 308 QKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQSNDC 387 (734)
T ss_pred HhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999877889
Q ss_pred HHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHHHHh
Q 004394 411 VDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLT 490 (756)
Q Consensus 411 vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~ 490 (756)
|++++++++++.+|+++|++.++++|+|+||+.++..+..++.- .+++++|++|++++||+|||++.++|++++|+.|+
T Consensus 388 v~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~vv~~l~~~-~~sl~epeak~amiWilg~y~~~i~~a~elL~~f~ 466 (734)
T KOG1061|consen 388 VSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESVVAILCEN-LDSLQEPEAKAALIWILGEYAERIENALELLESFL 466 (734)
T ss_pred HHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhhhhhhccc-ccccCChHHHHHHHHHHhhhhhccCcHHHHHHHHH
Confidence 99999999999999999999999999999999987666555543 37999999999999999999999999999999999
Q ss_pred hhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCC-ChHHHhHHHHHHHHhcCCHHHHHhhcCCCCCCCc
Q 004394 491 ENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADF-HQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVS 569 (756)
Q Consensus 491 ~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~-d~dVrdRA~~Y~rLL~~~~e~a~~vv~~~~p~i~ 569 (756)
++|.+|+ .+||+++|||.+|+|+++|.+.|++++.+|..|+.|+ |+|+||||++|||+|+.++..|++|+++++|.++
T Consensus 467 en~~dE~-~~Vql~LLta~ik~Fl~~p~~tq~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlLs~~~~~a~~v~~~~kP~is 545 (734)
T KOG1061|consen 467 ENFKDET-AEVQLELLTAAIKLFLKKPTETQELLQGVLPLATADTDNPDLRDRGLIYWRLLSEDPLIAKDVVLAEKPLIS 545 (734)
T ss_pred hhcccch-HHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhhhccccChhhhhhHHHHHHHhhcCHHHHHHHHhcCCCccc
Confidence 9999999 9999999999999999999999999999999999885 8999999999999999999999999999999999
Q ss_pred ccccCCChHHHHHHHhhcCcchhhccCCCCccccCCCCCCcccccccccccccccccCccccccccccccccccccchhh
Q 004394 570 VFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKDYRGPFEFSDELGNLSIAAESADNVVPAQGVEANDKDLLLSTSEK 649 (756)
Q Consensus 570 ~~~~~~~~~~~~~l~~~~~tls~vy~kp~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 649 (756)
.+.+..++.++|+|+.+|||+|+|||||++.|+.+.+.+.+.. ++++.+..-.++.. +++ |++.|..|+
T Consensus 546 ~~~~~~~p~~le~l~~~i~tlssVY~Kp~~~f~~~~~~~~~~~-~~~~~l~~~~~s~~-~~~---------D~~~~~~es 614 (734)
T KOG1061|consen 546 EETDSLDPTLLEELLCDIGTLSSVYHKPPSAFVEGQKGGLFKR-DEVGVLLSFAESQP-SIG---------DLLGGGLES 614 (734)
T ss_pred cCCCCCCchHHHHHHHhhccccceeecChHHhcCcCcccccCC-cchhhhccccccCC-Cch---------hhccCcccc
Confidence 9999999999999999999999999999999999999888877 22222222221111 111 554444443
Q ss_pred hhhcccCCCCCCCCCCCcCccc--hhhhhHHhhhccCCCC-CCCCCcccccccccCCCCCCCCCCCCCCCCccccccccc
Q 004394 650 EEIRGATFNVSGYSAPLYDSSA--ASVQSELAIISSTSAG-SAPSSSLAIDDLLGLGLSAAPAPEPASVPPSLKLNSKAI 726 (756)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (756)
. .....+|. +.+| +...+ ++-++++.+ +.+.+ .+.+..++++.-+| | ++|...+.|.....++...
T Consensus 615 ~--~~~~~~g~-~t~~-~e~~~~~t~~~~~~~~--~~~~~~~~~~~~~~~~~~f~-~----a~s~~~~~P~~~~~~~~~~ 683 (734)
T KOG1061|consen 615 L--DLFDLGGL-GTLS-LEVSSQFTRKEGELVI--YMKFTNKANSIRIDFEIQFN-G----APSLANSKPLLPNGKAVDS 683 (734)
T ss_pred c--ccccCCCC-cccc-hhhhcceecccccccc--cccccccccchhhhhHhhcC-C----CCcccCCCCCccccchhhc
Confidence 3 22333443 5555 22222 112222222 22222 33333455555555 4 2222223566777788889
Q ss_pred cChhHHHHhhhccccccccccc
Q 004394 727 LDPGTFQQKWRQLPISLSQVYL 748 (756)
Q Consensus 727 ~~~~~~~~~~~~~~~~~~~~~~ 748 (756)
+..|+||..|...|.+..|+|.
T Consensus 684 ~~l~~~~~~~~~~~~~~~q~~~ 705 (734)
T KOG1061|consen 684 LPLGTFGLMRPMEPLSNLQEAV 705 (734)
T ss_pred cCcchhhhhccCCCcchHHHHH
Confidence 9999999999999999999874
No 3
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-85 Score=730.68 Aligned_cols=544 Identities=30% Similarity=0.487 Sum_probs=491.8
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHH
Q 004394 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL 100 (756)
Q Consensus 21 ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL 100 (756)
+=.+|++-|.+ ++ +..|++|||++|++|+.|.|+|.+|++|+|+++++|.++|||+|+|+.+|++++||+++|
T Consensus 36 ~~~dL~~lLdS----nk---d~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL 108 (968)
T KOG1060|consen 36 RHDDLKQLLDS----NK---DSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL 108 (968)
T ss_pred ChHHHHHHHhc----cc---cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee
Confidence 34466666665 33 368999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
.||||||+|.|+|+++||.|||+|++||.+-+++.+.-.|+++..|++|||||+||.|+.|+|..+|+.- +.+.+.++
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIRvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k--~qL~e~I~ 186 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIRVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK--DQLEEVIK 186 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976 57888888
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC----C-
Q 004394 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL----D- 255 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~----d- 255 (756)
.| |.|++|.|+++|+.++.|+ ||++..+||+ .+++||+.+.+.++|+|+.++++|.+|++. .
T Consensus 187 ~L-LaD~splVvgsAv~AF~ev-----------CPerldLIHk-nyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~ 253 (968)
T KOG1060|consen 187 KL-LADRSPLVVGSAVMAFEEV-----------CPERLDLIHK-NYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPT 253 (968)
T ss_pred HH-hcCCCCcchhHHHHHHHHh-----------chhHHHHhhH-HHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCcc
Confidence 87 7999999999999999997 5678889997 599999999999999999999999999732 0
Q ss_pred ----------------------------hhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Q 004394 256 ----------------------------SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPL 307 (756)
Q Consensus 256 ----------------------------~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L 307 (756)
..+..-+++...++|++.|++||+++++++.++.+... ..+++.+|
T Consensus 254 ~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------~~~i~kaL 327 (968)
T KOG1060|consen 254 VVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------VTKIAKAL 327 (968)
T ss_pred ccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH------HHHHHHHH
Confidence 12344577888899999999999999999999987531 24678899
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCH
Q 004394 308 LTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDI 387 (756)
Q Consensus 308 ~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~ 387 (756)
+++|.+ .+++||++|++|..|..+.|.+|.+|++.||++..||+-||..||+||..|+|++|+..|+.||..|+.+.|.
T Consensus 328 vrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~ 406 (968)
T KOG1060|consen 328 VRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDR 406 (968)
T ss_pred HHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCch
Confidence 999985 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHH
Q 004394 388 PIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKA 466 (756)
Q Consensus 388 ~~~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~ 466 (756)
+|+..+|++||+||.+.-.+ .-|++.|+++++.....|+.|.+++|+.++++.|..+..++..+.+++ +++.-|.|++
T Consensus 407 ~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll-dti~vp~ARA 485 (968)
T KOG1060|consen 407 SFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL-DTILVPAARA 485 (968)
T ss_pred hHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh-hhhhhhhhhc
Confidence 99999999999999987655 459999999999999999999999999999999998877777777776 8899999999
Q ss_pred HHHhHhccCCCCCCC-hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhHHHH
Q 004394 467 ALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALF 545 (756)
Q Consensus 467 a~iWiLGEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~ 545 (756)
+++|++|||++.++. +|++||.++++|.+|. ++||+|+|...+|+|+..+.+.+.+++++++.+.+|.+.|+||||+|
T Consensus 486 ~IiWLige~~e~vpri~PDVLR~laksFs~E~-~evKlQILnL~aKLyl~~~~~~kll~~Yv~~L~~yD~sYDiRDRaRF 564 (968)
T KOG1060|consen 486 GIIWLIGEYCEIVPRIAPDVLRKLAKSFSDEG-DEVKLQILNLSAKLYLTNIDQTKLLVQYVFELARYDLSYDIRDRARF 564 (968)
T ss_pred eeeeeehhhhhhcchhchHHHHHHHHhhcccc-chhhHHHHHhhhhheEechhhHHHHHHHHHHHhccCCCcchhHHHHH
Confidence 999999999999875 8999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCH---HHHHhhcCCCCCCCcccccCCChHHHHHHHhhcCcchhhccCCCCcc
Q 004394 546 YHRLLQYNV---SVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMF 601 (756)
Q Consensus 546 Y~rLL~~~~---e~a~~vv~~~~p~i~~~~~~~~~~~~~~l~~~~~tls~vy~kp~~~f 601 (756)
|.+|+.... +.+++++++.+|+... +..+.+. +-.+||+|.+.+.|.--|
T Consensus 565 ~r~l~~~~~~Ls~h~~ei~l~~Kpa~~~-----es~f~~~-~~~~gslS~lLn~~a~GY 617 (968)
T KOG1060|consen 565 LRQLISPLEALSKHAREIFLASKPAPVL-----ESSFKDR-HYQLGSLSLLLNAPAPGY 617 (968)
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCccC-----cccccCC-CcccchHHHHhcCcCcCC
Confidence 999988653 4578999999977532 1122233 457899999998876533
No 4
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-77 Score=668.00 Aligned_cols=528 Identities=17% Similarity=0.227 Sum_probs=446.6
Q ss_pred cchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHH
Q 004394 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (756)
Q Consensus 19 k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~ 98 (756)
+.|++.||+.|++.. .+..+|++.+.|++|++|+|||.+++.++.+|++++++|..||+|||+++.++++++|+.
T Consensus 31 ~kE~a~IRa~ire~~-----~d~~~r~rniaKLlYi~MLGypahFGqieclKLias~~f~dKRiGYLaamLlLdE~qdvl 105 (866)
T KOG1062|consen 31 QKECAAIRASIREPT-----NDPRKRHRNIAKLLYIHMLGYPAHFGQIECLKLIASDNFLDKRIGYLAAMLLLDERQDLL 105 (866)
T ss_pred HHHHHHHHHHhcCCC-----CCHHHHHHHHHHHHHHHHhCCCccchhhHHHHHhcCCCchHHHHHHHHHHHHhccchHHH
Confidence 468899999998743 345789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHH
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~ 178 (756)
+|++|+++|||+|+|.+++|+||.++|+|..+||++.+.|.|.++|++++|||||||++|.+|++++.|+.+ +.|+..
T Consensus 106 lLltNslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~--e~f~~~ 183 (866)
T KOG1062|consen 106 LLLTNSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV--EHFVIA 183 (866)
T ss_pred HHHHHHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH--HHhhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 779999
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc------------cCChhHHHHHHH
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------EFSEWAQCLVLE 246 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~------------~~~~W~Qi~IL~ 246 (756)
..++ |+|+|++|+.+++..+.+++..++... +..++ +.. -+.+.|+.+. .++||+||+||+
T Consensus 184 ~~~l-L~ek~hGVL~~~l~l~~e~c~~~~~~l-~~fr~----l~~-~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLr 256 (866)
T KOG1062|consen 184 FRKL-LCEKHHGVLIAGLHLITELCKISPDAL-SYFRD----LVP-SLVKILKQLTNSGYSPEYDVHGISDPFLQIRILR 256 (866)
T ss_pred HHHH-HhhcCCceeeeHHHHHHHHHhcCHHHH-HHHHH----HHH-HHHHHHHHHhcCCCCCccCccCCCchHHHHHHHH
Confidence 9997 799999999999999999998766421 11111 112 2334444432 269999999999
Q ss_pred HHHhhCCCChhHHHHHHHH-HHHHh------cccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchH
Q 004394 247 LVAKYVPLDSNEIFDIMNL-LEDRL------QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS 319 (756)
Q Consensus 247 lL~~y~p~d~~e~~~il~~-l~~~L------~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nir 319 (756)
+|+.++..|++. .++|+- +.... ++.+.||+||||++|+.+.++.. +....++.|++||.+++.|+|
T Consensus 257 lLriLGq~d~da-Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~Nir 330 (866)
T KOG1062|consen 257 LLRILGQNDADA-SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIR 330 (866)
T ss_pred HHHHhcCCCccH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCcccee
Confidence 999999877544 344443 33333 24568999999999999986532 234578899999999999999
Q ss_pred HHHHHHHHHHHhhCCcccccccc-eeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 004394 320 YAVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVG 398 (756)
Q Consensus 320 YvaL~~l~~L~~~~p~lf~~~~~-~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg 398 (756)
|++|..+.+.++..|.++++|.. ++.|+.|.|.+||+++||++|+|+|++|+..+++||++|+...|.+|+.+.+.+|.
T Consensus 331 YvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~ 410 (866)
T KOG1062|consen 331 YVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESSDEDFKADIASKIA 410 (866)
T ss_pred eeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999999984 67899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcchHHHHHH-HHhhhc---cCCchhHHHHHHhHh
Q 004394 399 KIALQQ-YDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIAVV-GSISSQ---NVQEPKAKAALIWML 472 (756)
Q Consensus 399 ~lA~k~-~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~-p~~~~~~~~~l-~~l~~~---~i~~p~ak~a~iWiL 472 (756)
.+|+|| |+..|++|+++..++.+|+||..++|..+..++.+- ++.+++...-+ ..+..+ .+.++....+++|+|
T Consensus 411 ~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~I 490 (866)
T KOG1062|consen 411 ELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCI 490 (866)
T ss_pred HHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Confidence 999999 577899999999999999999999999888888776 77777654221 112111 355666788999999
Q ss_pred ccCCCCCCC-----------hHHH---HHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChH
Q 004394 473 GEYSQDMQD-----------APYI---LESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQD 538 (756)
Q Consensus 473 GEy~~~i~~-----------~~~i---L~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~d 538 (756)
||||++.-+ ..++ ++.+++.+.. + ..+|.++|+|++|+..+.+.. ...+++++..++.+.|.|
T Consensus 491 GEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s-~-~~tk~yal~Al~KLSsr~~s~-~~ri~~lI~~~~~s~~~e 567 (866)
T KOG1062|consen 491 GEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSS-D-STTKGYALTALLKLSSRFHSS-SERIKQLISSYKSSLDTE 567 (866)
T ss_pred hhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHhcccccHH
Confidence 999976533 2444 4455555432 3 889999999999999999864 556788999999999999
Q ss_pred HHhHHHHHHHHhcCCHHHHHhhcCCCCCCCcc
Q 004394 539 VHDRALFYHRLLQYNVSVAERVVNPPKQAVSV 570 (756)
Q Consensus 539 VrdRA~~Y~rLL~~~~e~a~~vv~~~~p~i~~ 570 (756)
+||||++|..|+..+ ..+++.+++.||..+.
T Consensus 568 lQQRa~E~~~l~~~~-~~lr~siLe~mp~~e~ 598 (866)
T KOG1062|consen 568 LQQRAVEYNALFAKD-KHLRKSILERMPSCED 598 (866)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhcccCccccc
Confidence 999999999999876 4556778888987644
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=100.00 E-value=5.1e-78 Score=695.06 Aligned_cols=510 Identities=34% Similarity=0.537 Sum_probs=447.9
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHH
Q 004394 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (756)
Q Consensus 20 ~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l 99 (756)
....||++-+.+ .. .+.++|+++++|+++++++|+|++++|++|+++++++|++.||+||||++.+++.++|+++
T Consensus 4 ~~~~el~~~~~~----~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~ 78 (526)
T PF01602_consen 4 RISQELAKILNS----FK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLI 78 (526)
T ss_dssp HHHHHHHHHHHC----SS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHH
T ss_pred hHHHHHHHHHhc----CC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHH
Confidence 344455555554 21 2457899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
|++|+++||++|+||++||+|||+||+++++++++.+.+.|.+++.|++|||||+|++|+.|+|+.+|+.+... |.+.+
T Consensus 79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l 157 (526)
T PF01602_consen 79 LIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKL 157 (526)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998444 89999
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~ 259 (756)
.++ +.|+|++|+.+|+.++.+| +.++... ..++ +..+.+|++.+..++||+|+++++++..|.+.++.+.
T Consensus 158 ~~l-L~d~~~~V~~~a~~~l~~i-~~~~~~~-------~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~ 227 (526)
T PF01602_consen 158 KQL-LSDKDPSVVSAALSLLSEI-KCNDDSY-------KSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDA 227 (526)
T ss_dssp HHH-TTHSSHHHHHHHHHHHHHH-HCTHHHH-------TTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHH
T ss_pred hhh-ccCCcchhHHHHHHHHHHH-ccCcchh-------hhhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhh
Confidence 997 6999999999999999999 3222110 0122 3467777887899999999999999999999998888
Q ss_pred --HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-Ccc
Q 004394 260 --FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFI 336 (756)
Q Consensus 260 --~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~-p~l 336 (756)
..+++.+.+.+++.+.+|+++|+++++++.+..+ ++.++.++|++|++++++|+||++|+.|..+++.+ +.+
T Consensus 228 ~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v 302 (526)
T PF01602_consen 228 DKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAV 302 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHH
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhh
Confidence 7899999999999999999999999999887532 45678899999999999999999999999999999 556
Q ss_pred cccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhC-CHHHHHHHHHHHHHHHhhcCC-hhHHHHHH
Q 004394 337 FASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQQYD-VNAIVDRL 414 (756)
Q Consensus 337 f~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~-D~~~~~~~I~aIg~lA~k~~~-~~~~vd~L 414 (756)
+..+...|++++++|.+||++||++|+.++|++|+..|++||..|+++. |.+++++++++|+.||.+|+. ..||++++
T Consensus 303 ~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l 382 (526)
T PF01602_consen 303 FNQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTL 382 (526)
T ss_dssp GTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHH
T ss_pred hhhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHH
Confidence 6566677788889999999999999999999999999999999999665 899999999999999999974 58999999
Q ss_pred HHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCC---hHHHHHHHhh
Q 004394 415 LQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTE 491 (756)
Q Consensus 415 l~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~---~~~iL~~l~~ 491 (756)
++++..+++++..|+|..++++++++|+.++.++..+.+++ +++.+++++++++|++||||+.+++ ++++++.+++
T Consensus 383 ~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l-~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~ 461 (526)
T PF01602_consen 383 LKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELL-EDISSPEALAAAIWILGEYGELIENTESAPDILRSLIE 461 (526)
T ss_dssp HHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHH-TSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHH
T ss_pred HHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHH-HHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHH
Confidence 99999999999999999999999999999988877777765 4588999999999999999999998 9999999999
Q ss_pred hhccCChHHHHHHHHHHhhHhhhcCCh-hhH-HHHHHHHHhhhc-CCChHHHhHHHHHHHHhcC
Q 004394 492 NWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQ-KVLGAALAAGLA-DFHQDVHDRALFYHRLLQY 552 (756)
Q Consensus 492 ~f~~e~~~~Vq~~lLtA~~Kl~~~~p~-e~~-~~l~~vL~~~~~-d~d~dVrdRA~~Y~rLL~~ 552 (756)
+|..++ ..||.++||+++|++.+.|+ +.+ .+++.+.+.+++ +.|+||||||+||++||+.
T Consensus 462 ~~~~~~-~~vk~~ilt~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~~ 524 (526)
T PF01602_consen 462 NFIEES-PEVKLQILTALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLLNS 524 (526)
T ss_dssp HHTTSH-HHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHHHH
T ss_pred hhcccc-HHHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHcc
Confidence 999998 99999999999999999985 343 566566666664 6799999999999999975
No 6
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-75 Score=639.59 Aligned_cols=542 Identities=20% Similarity=0.261 Sum_probs=464.0
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHH
Q 004394 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (756)
Q Consensus 20 ~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l 99 (756)
.|++.||+.|+.. ++-++ .+||++++|++|++++|||+.+++++.+++++++.|++|.+|||+++.+.++++|++-
T Consensus 35 kELanIRskFk~~--K~L~g--YqkKKYV~KLlyI~llg~dIdFGhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~k 110 (938)
T KOG1077|consen 35 KELANIRSKFKGD--KTLDG--YQKKKYVCKLLYIYLLGYDIDFGHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMK 110 (938)
T ss_pred HHHHHHHHHhccc--cccch--hhhHHHHHHHHHHHHhcCccccchHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHH
Confidence 5788888888862 23333 5799999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHhhhcCCcccCCCchH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~--~pyVRKkAalal~kl~~~~p~~~~~~~~i~ 177 (756)
|++|+++|||.+.||...+|||.++++|+..++++.+.++|-|+|.++ .+||||+||+|++++|+.+||.+...+|.+
T Consensus 111 lvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~ 190 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQ 190 (938)
T ss_pred HHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccChhhHHH
Confidence 999999999999999999999999999999999999999999999654 689999999999999999999997779999
Q ss_pred HHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh-------------ccCChhHHHHH
Q 004394 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-------------KEFSEWAQCLV 244 (756)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l-------------~~~~~W~Qi~I 244 (756)
++..+ |+|++-+|+.++..++.-|.+++|..+ +.| +. ..+.+|.+.. ..++||+|+++
T Consensus 191 riv~L-L~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~------~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 191 RIVHL-LDDQHMGVVTAATSLIEALVKKNPESY-KTC------LP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred HHHHH-hCccccceeeehHHHHHHHHHcCCHHH-hhh------HH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 99997 799999999999999999999888532 122 11 1334444321 23699999999
Q ss_pred HHHHHhhC-CCChhHHHHHHHHHHHHh------------cccc--hHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q 004394 245 LELVAKYV-PLDSNEIFDIMNLLEDRL------------QHAN--GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLT 309 (756)
Q Consensus 245 L~lL~~y~-p~d~~e~~~il~~l~~~L------------~~~n--~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~ 309 (756)
+++|..|. |+|+.....+.+.+...| +|+| +||+|||+++++++..+. +++.|..+.|+.
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~-----~ll~~~~~~Lg~ 336 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEP-----ELLSRAVNQLGQ 336 (938)
T ss_pred HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcH-----HHHHHHHHHHHH
Confidence 99999994 345555555555555544 2333 699999999999998643 356788889999
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhCCc--ccccccceee-ec-CCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhC
Q 004394 310 LVSSGSPEQSYAVLSHLHILVMRAPF--IFASDYKHFY-CQ-YNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV 385 (756)
Q Consensus 310 LLss~~~nirYvaL~~l~~L~~~~p~--lf~~~~~~f~-c~-~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~ 385 (756)
||+++++|+||++|+.+..|+...+. .+.+|...++ .+ .+.|.+||++++|+||.||+.+|+++||+||+.|+...
T Consensus 337 fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~elLqYL~tA 416 (938)
T KOG1077|consen 337 FLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVAELLQYLETA 416 (938)
T ss_pred HhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHHHHHHHHhhc
Confidence 99999999999999999999988664 5777876544 33 47889999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhh-hccCCchh
Q 004394 386 DIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS-SQNVQEPK 463 (756)
Q Consensus 386 D~~~~~~~I~aIg~lA~k~~-~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~-~~~i~~p~ 463 (756)
|..++++++.+++.+|+||+ |.+||||++++|+..+|+|+.+|+|.++.+|+.++++++.++..-+.+++ ...++|.-
T Consensus 417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe~Lq~~a~hE~m 496 (938)
T KOG1077|consen 417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFEYLQKPACHENM 496 (938)
T ss_pred chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHHHHhhhHHHHHH
Confidence 99999999999999999996 78999999999999999999999999999999999999998876665544 34566666
Q ss_pred HHHHHHhHhccCCCCCCC-----hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChH
Q 004394 464 AKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQD 538 (756)
Q Consensus 464 ak~a~iWiLGEy~~~i~~-----~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~d 538 (756)
+|+ ..||+||||++|.+ +...+..+.++|+..+ +.+|+.+||+..|++...| |.++.++++|+...+..|+|
T Consensus 497 VKv-ggyiLGEfg~LIa~~prss~~~qFsllh~K~~~~s-~~tr~lLLtTyiKl~nl~P-Ei~~~v~~vFq~~~n~~D~E 573 (938)
T KOG1077|consen 497 VKV-GGYILGEFGNLIADDPRSSPAVQFSLLHEKLHLCS-PVTRALLLTTYIKLINLFP-EIKSNVQKVFQLYSNLIDVE 573 (938)
T ss_pred HHh-hhhhhhhhhhhhcCCCCCChHHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhCh-hhhHHHHHHHHhhcccCCHH
Confidence 665 48999999999975 6788999999999999 9999999999999998887 68999999999998889999
Q ss_pred HHhHHHHHHHHhcCCHHHHHhhcCCCCCCCcccccCCChHHHHHHHhh
Q 004394 539 VHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDE 586 (756)
Q Consensus 539 VrdRA~~Y~rLL~~~~e~a~~vv~~~~p~i~~~~~~~~~~~~~~l~~~ 586 (756)
+||||+||.+|.+...--+-.+|+++||| |.| .++.++.+|-..
T Consensus 574 lQqRa~EYLql~k~as~dvL~~vleeMPp---F~e-r~ssll~kl~~~ 617 (938)
T KOG1077|consen 574 LQQRAVEYLQLSKLASTDVLQTVLEEMPP---FPE-RESSLLKKLKKK 617 (938)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHhhCCC---Ccc-ccchHHHHhhcc
Confidence 99999999999987633445678899999 655 445566665543
No 7
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.9e-70 Score=629.11 Aligned_cols=561 Identities=29% Similarity=0.458 Sum_probs=480.4
Q ss_pred chHHHHHHH-HHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHH
Q 004394 20 GEVSDLKSQ-LRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (756)
Q Consensus 20 ~ei~Elr~~-L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~ 98 (756)
.++++++.. |.+ +++.+|+++|||+|+.|+.|+|||.+|++|+|.+.|.|.++|||+|+||.+|++.+|+++
T Consensus 18 ~~~~~~~sg~l~s-------~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~ 90 (757)
T COG5096 18 DSVAALSSGRLES-------SNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA 90 (757)
T ss_pred hHHhhhccccccc-------cChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH
Confidence 466666665 554 456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHH
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~ 178 (756)
+|++|+++||++|+||++||+|||+||.++.++++++++++|+++++|++|||||+||+|+.|+|+.+++.+.+.+.++.
T Consensus 91 lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~~~ 170 (757)
T COG5096 91 LLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLIDI 170 (757)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987778888
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh-----ccCChhHHHHHHHHHHhhCC
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-----KEFSEWAQCLVLELVAKYVP 253 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l-----~~~~~W~Qi~IL~lL~~y~p 253 (756)
+..+ +.|.||.|++||+.+|.+|.......+ .+ .+.+.+.++ ..+.+|.+..+++.|..+.+
T Consensus 171 l~~l-~~D~dP~Vi~nAl~sl~~i~~e~a~~~----------~~--~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~ 237 (757)
T COG5096 171 LKEL-VADSDPIVIANALASLAEIDPELAHGY----------SL--EVILRIPQLDLLSLSVSTEWLLLIILEVLTERVP 237 (757)
T ss_pred HHHH-hhCCCchHHHHHHHHHHHhchhhhhhH----------HH--HHHHHhhhccchhhhhhHHHHHHHHHHHHHccCC
Confidence 8886 699999999999999999965411100 00 111112221 12349999999999999999
Q ss_pred CChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 004394 254 LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (756)
Q Consensus 254 ~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~ 333 (756)
.++.++..+.+++...++|.|++|+..+++.++.+....+.. .++.+..++|++++..++..++|+...++..++..+
T Consensus 238 ~~~~s~~~~~~~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~--~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~ 315 (757)
T COG5096 238 TTPDSAEDFEERLSPPLQHNNAEVLLIAVKVILRLLVFLPSN--NLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVC 315 (757)
T ss_pred CCCCcHHHHHHhccchhhhCcHHHHHHHHHHHHHHhhhhccc--cHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhh
Confidence 999999999999999999999999999999999987655442 355677788999998766899999999999999999
Q ss_pred CcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh--CCHHHHHHHHHHHHHHHhhcCCh-hHH
Q 004394 334 PFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN--VDIPIARESIRAVGKIALQQYDV-NAI 410 (756)
Q Consensus 334 p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~--~D~~~~~~~I~aIg~lA~k~~~~-~~~ 410 (756)
|..|....+.|+|++++|+|++..|+++++.+++.+|..+++.|+.+|+.+ .|.+++++++++||.++.+.++. ..|
T Consensus 316 ~k~~~~~~~~f~~~~~~~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~~s~~~~~ 395 (757)
T COG5096 316 SKLLDKVKKLFLIEYNDDIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKAESSVNDC 395 (757)
T ss_pred HHHHHHHhhhhhhhccchHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999999999998644 679
Q ss_pred HHHHHHHhh---hcCchhhHHH-----HHHHH---HHHhhCCCc-chHHHHHHHHhhhccCC----chhHHHHH-----H
Q 004394 411 VDRLLQFLE---MEKDYVTAEA-----LVLVK---DLLRKYPQW-SHDCIAVVGSISSQNVQ----EPKAKAAL-----I 469 (756)
Q Consensus 411 vd~Ll~LL~---~~~~~v~~E~-----i~~i~---~Il~~~p~~-~~~~~~~l~~l~~~~i~----~p~ak~a~-----i 469 (756)
|+.+++++. ..++|+.+|+ |.+++ ++++.+|+- .+.....+..+ .+.++ +|+++.++ +
T Consensus 396 I~~~lel~~g~~~~~~Yi~~e~~~~~~i~v~r~~~~~lr~l~~~~~~~~~~~l~~~-~e~l~~~~~~P~~k~~~~~~~~~ 474 (757)
T COG5096 396 ISELLELLEGVWIRGSYIVQEVRIVDCISVIRISVLVLRILPNEYPKILLRGLYAL-EETLELQSREPRAKSVTDKYLGA 474 (757)
T ss_pred HHHHHHhccchhhccchhhhhhcccceeeeeehhcchhhhcCCcchhhhHHHHHHH-HHHhhccccCcHHHHHHhhhhHH
Confidence 999999999 8899999999 66665 888888876 32222222222 23444 79999888 9
Q ss_pred hHhccCCCCCCCh-HHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHH----HHHHHHHhhhcC-CChHHHhHH
Q 004394 470 WMLGEYSQDMQDA-PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQK----VLGAALAAGLAD-FHQDVHDRA 543 (756)
Q Consensus 470 WiLGEy~~~i~~~-~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~----~l~~vL~~~~~d-~d~dVrdRA 543 (756)
|++|||++.+++- |+.++.++.+|..|+ .+||.+++++.+|++...+...++ +.+.++..|... .++|+||||
T Consensus 475 wl~ge~~~~i~r~~~~~l~~~~~~~~~E~-levq~~Il~~svkl~~~~~~~~~~~~~~~d~~v~~~~~~~v~~~DlRDra 553 (757)
T COG5096 475 WLLGEFSDIIPRLEPELLRIAISNFVDET-LEVQYTILMSSVKLIANSIRKAKQCNSELDQDVLRRCFDYVLVPDLRDRA 553 (757)
T ss_pred HhHHHHHHHHhhhhHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHhCcHhhhhccchhccHHHHHHHhccCChhHHHHH
Confidence 9999999999874 589999999999999 999999999999999998865444 566888888866 589999999
Q ss_pred HHHHHHhc-CCHHHHHhhcCCCCCCCcc-------cccCCChHHHHHHHhhc--CcchhhccCCCCccccC
Q 004394 544 LFYHRLLQ-YNVSVAERVVNPPKQAVSV-------FADTQSSEIKDRIFDEF--NSLSVVYQKPSYMFTDK 604 (756)
Q Consensus 544 ~~Y~rLL~-~~~e~a~~vv~~~~p~i~~-------~~~~~~~~~~~~l~~~~--~tls~vy~kp~~~f~~~ 604 (756)
.+||++++ ..++.+..+++.++|...+ ...+..+++++.|...| |+++.+|++|+..+...
T Consensus 554 ~my~~~lst~~~~~s~~i~~e~~~s~~~~~~i~~~~~~~~t~~~l~nl~~~~t~~~l~~~~~~~~~~l~~~ 624 (757)
T COG5096 554 RMYSRLLSTPLPEFSDPILCEAKKSNSQFEIILSALLTNQTPELLENLRLDFTLGTLSTIPLKPIFNLRKG 624 (757)
T ss_pred HHHHHHhcCCCccccchhhhcccccccchhhhhhhhccccCHHHHHhhhccccccceeccCCCCcccCCCC
Confidence 99999999 4578888999888665543 33445566666655555 99999999998887755
No 8
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-61 Score=531.31 Aligned_cols=508 Identities=18% Similarity=0.260 Sum_probs=430.8
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHH
Q 004394 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL 99 (756)
Q Consensus 20 ~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l 99 (756)
..+.|+|+|+++ .+...|.+++.|+.|+.|+|+|++|.-++++++|++..+..||+||+++..-++.++|+++
T Consensus 36 ~~l~e~r~E~k~-------~d~~~k~~a~~kl~yl~mlg~d~swa~f~iveVmsssk~~~krigylaa~qSf~~~tdvlm 108 (877)
T KOG1059|consen 36 QCLEEIRQELKS-------DDLNVKSNAVLKLTYLEMLGVDMSWAAFHIVEVMSSSKFQQKRIGYLAASQSFHDDTDVLM 108 (877)
T ss_pred HHHHHHHHHhhc-------hhhhhhHHHHHHHHHHHHHcchHHHHhhhhhhhhhhhhhHHHHHhHHHHHHhhcCCccHHH
Confidence 458899999997 4567899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
|++|+++||++++|.+-.|+||..|+++.+|++++.+.++|..+|++..|||||+|++.++|+|.+||+.+ ..-.++|
T Consensus 109 L~tn~~rkdl~S~n~ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL 186 (877)
T KOG1059|consen 109 LTTNLLRKDLNSSNVYEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRL 186 (877)
T ss_pred HHHHHHHHHhccCccchhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 4556777
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~ 259 (756)
.+- |.|+||+|+++|+++++|+++++|+++...+ |.+++|+. ...|+|.-|+||++++.+.|-+|+..
T Consensus 187 ~Ek-LeDpDp~V~SAAV~VICELArKnPknyL~LA---------P~ffkllt--tSsNNWmLIKiiKLF~aLtplEPRLg 254 (877)
T KOG1059|consen 187 VEK-LEDPDPSVVSAAVSVICELARKNPQNYLQLA---------PLFYKLLV--TSSNNWVLIKLLKLFAALTPLEPRLG 254 (877)
T ss_pred HHh-ccCCCchHHHHHHHHHHHHHhhCCccccccc---------HHHHHHHh--ccCCCeehHHHHHHHhhccccCchhh
Confidence 777 6999999999999999999999998754433 46778875 56899999999999999999999999
Q ss_pred HHHHHHHHHHhcccch-HHHHHHHHHHHhhcc--ccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcc
Q 004394 260 FDIMNLLEDRLQHANG-AVVLSTIKVFLHLTL--SMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~-aVvleaik~ii~l~~--~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~l 336 (756)
.++++.+..++.++.. +++||||++++.... .+++ +.....-++.-|..|+.++|+|++|++|-++.+|+..+|..
T Consensus 255 KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d-~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~ 333 (877)
T KOG1059|consen 255 KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSD-HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA 333 (877)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCC-cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH
Confidence 9999999999988764 899999999987621 1111 11122233445778999999999999999999999999999
Q ss_pred cccccce-eeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCH-HHHHHHHHHH-HHHHhh-c---CChhH
Q 004394 337 FASDYKH-FYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDI-PIARESIRAV-GKIALQ-Q---YDVNA 409 (756)
Q Consensus 337 f~~~~~~-f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~-~~~~~~I~aI-g~lA~k-~---~~~~~ 409 (756)
++.|... +-|+.|.|.+||.++||+|+.|++++|+.+||+.|+.|+...|. .++.+++..| +.|+.. | .+.+|
T Consensus 334 Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II~iCS~snY~~ItdFEW 413 (877)
T KOG1059|consen 334 VQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRIISICSQSNYQYITDFEW 413 (877)
T ss_pred HHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHH
Confidence 9999875 45999999999999999999999999999999999999988776 8888877765 455543 3 26789
Q ss_pred HHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhc---------cCCchhHHHHHHhHhccCCCCCC
Q 004394 410 IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ---------NVQEPKAKAALIWMLGEYSQDMQ 480 (756)
Q Consensus 410 ~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~---------~i~~p~ak~a~iWiLGEy~~~i~ 480 (756)
|+.++++|....+..-...+...+.|+..+.|..|+..+..+..++.+ +..-+++..|++||+|||+++++
T Consensus 414 YlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ve 493 (877)
T KOG1059|consen 414 YLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVE 493 (877)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhhccchhHHHHHHHHHHHHHHHHhh
Confidence 999999999987766667777889999999999998777666665531 22346788899999999999999
Q ss_pred ChHHHHHHHhhhhcc-CChHHHHHHHHHHhhHhhhcCCh---h------hHHHHHHH---HHhhhcCCChHHHhHHHHHH
Q 004394 481 DAPYILESLTENWEE-EPSAEVRLHLLTAVMKCFFKRPP---E------TQKVLGAA---LAAGLADFHQDVHDRALFYH 547 (756)
Q Consensus 481 ~~~~iL~~l~~~f~~-e~~~~Vq~~lLtA~~Kl~~~~p~---e------~~~~l~~v---L~~~~~d~d~dVrdRA~~Y~ 547 (756)
|+.++++.+...-.+ .+ ..+|..++.+++|+|+..-. + ...++..+ |..+..+.|.|||+||.+.+
T Consensus 494 n~~~~leamlrpr~~~lp-~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~ 572 (877)
T KOG1059|consen 494 NPNDTLEAMLRPRSDLLP-GHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVL 572 (877)
T ss_pred CHHHHHHHHhcCccccCc-hHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHH
Confidence 999999999986654 45 89999999999999986311 1 11232333 33445678999999955444
Q ss_pred HHh
Q 004394 548 RLL 550 (756)
Q Consensus 548 rLL 550 (756)
.++
T Consensus 573 ~li 575 (877)
T KOG1059|consen 573 ELI 575 (877)
T ss_pred HHH
Confidence 443
No 9
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-46 Score=414.35 Aligned_cols=428 Identities=22% Similarity=0.339 Sum_probs=369.7
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhh-hccCCChhhHHHHHHHHHHccccCCh----
Q 004394 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPD---- 96 (756)
Q Consensus 22 i~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~-l~~s~d~~~KkL~YLyl~~~~~~~~e---- 96 (756)
-.||++.|++ ++++.|.++|||+|+.|..|.+++.++++|++ ++.+++.++||+.|+||...-+.++|
T Consensus 22 ~~~ik~~Lek-------~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 22 EDEIKEKLEK-------GDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLL 94 (948)
T ss_pred hHHHHHHHhc-------CChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccH
Confidence 4688999998 67789999999999999999999999999997 78999999999999999999888875
Q ss_pred -HHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCc
Q 004394 97 -LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADF 175 (756)
Q Consensus 97 -l~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~ 175 (756)
-++|++|.++|||+|||++|||..||++|.++.+|+++.++|.|+.||.|.++||||.|++|+..+|+..-..+ ++.
T Consensus 95 ~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~--pDa 172 (948)
T KOG1058|consen 95 HEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLI--PDA 172 (948)
T ss_pred HHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhc--CCh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987777 788
Q ss_pred hHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHH---HhccCChhHHHHHHHHHHhhC
Q 004394 176 PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN---RIKEFSEWAQCLVLELVAKYV 252 (756)
Q Consensus 176 i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~---~l~~~~~W~Qi~IL~lL~~y~ 252 (756)
.+.+.+.|..|.||.+..||+..|..+.+. + .+.+|.. .+..+++-+|..|++++..-+
T Consensus 173 peLi~~fL~~e~DpsCkRNAFi~L~~~D~E-----------r-------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~ 234 (948)
T KOG1058|consen 173 PELIESFLLTEQDPSCKRNAFLMLFTTDPE-----------R-------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVC 234 (948)
T ss_pred HHHHHHHHHhccCchhHHHHHHHHHhcCHH-----------H-------HHHHHHhhHhhccCccHHHHHHHHHHHHHHH
Confidence 999999988999999999999999887431 1 2445554 456778889999999999999
Q ss_pred CCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHHHHHh
Q 004394 253 PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 253 p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LL-ss~~~nirYvaL~~l~~L~~ 331 (756)
..++.+...++..+..+|++++++|.|||+-++..+.+... .++.+++.++.++ ..+++|++-++|+.|..+-.
T Consensus 235 ~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-----alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 235 LANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-----ALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred hcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-----HHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 88999999999999999999999999999999988876533 4456666666665 45789999999999999987
Q ss_pred hCCcccccccc-eeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhhhC------CHHHHHHHHHHHHHHHhh
Q 004394 332 RAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE-YAANV------DIPIARESIRAVGKIALQ 403 (756)
Q Consensus 332 ~~p~lf~~~~~-~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~-Yl~~~------D~~~~~~~I~aIg~lA~k 403 (756)
.+-.+++..+- ++-.+...|..||++.|+|...|+...|+++|+.-|.. ..... +..+|+.++++|..||.+
T Consensus 310 ~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~ 389 (948)
T KOG1058|consen 310 LHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVK 389 (948)
T ss_pred hhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhc
Confidence 77777777653 33356777789999999999999999999999998863 43322 246899999999999999
Q ss_pred cCCh-hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCCh
Q 004394 404 QYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA 482 (756)
Q Consensus 404 ~~~~-~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~ 482 (756)
||+. +..|..++++|...++.....++..++..++++|+++..++..+..-+ +.+..+.+...++||+|||++-..+.
T Consensus 390 Fp~~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~-~~irS~ki~rgalwi~GeYce~~~~i 468 (948)
T KOG1058|consen 390 FPEVAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRASIIEKLLETF-PQIRSSKICRGALWILGEYCEGLSEI 468 (948)
T ss_pred ChHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhh-hhhcccccchhHHHHHHHHHhhhHHH
Confidence 9987 458999999999988888999999999999999999876654332221 46677888888999999999866543
No 10
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-34 Score=325.32 Aligned_cols=497 Identities=16% Similarity=0.253 Sum_probs=419.1
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-----CccchhhhhhhhccCCChhhHHHHHHHHHHccccC
Q 004394 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-----DVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN 94 (756)
Q Consensus 20 ~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~-----Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~ 94 (756)
.=++|.| -|.+ .|-+..+++.++.|++|+...|+ ....+|+.|.|+++++|..+||++|+++.......
T Consensus 22 ~vlqe~r-~fne-----spvn~r~c~~~lskllyll~qge~~~~~eate~ff~~tKlfQskd~~LRr~vYl~Ikels~is 95 (865)
T KOG1078|consen 22 TVLQEAR-TFNE-----SPVNPRKCRHILSKLLYLLNQGEHFGETEATELFFAITKLFQSKDVSLRRMVYLAIKELSKIS 95 (865)
T ss_pred HHHHHHH-hhcC-----CCCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHhhcCHHHHHHHHHHHhhccccc
Confidence 3355666 5554 23345788999999999999995 56678999999999999999999999999999877
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCC
Q 004394 95 PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (756)
Q Consensus 95 ~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~ 174 (756)
.|. +++++++.||.+..++.+|+.|||+||+|-...+...+...+++++.|++|.|+-.|...-++++..+++.+ ..
T Consensus 96 edv-iivtsslmkD~t~~~d~yr~~AiR~L~~I~d~~m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~v--kr 172 (865)
T KOG1078|consen 96 EDV-IIVTSSLMKDMTGKEDLYRAAAIRALCSIIDGTMLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVV--KR 172 (865)
T ss_pred hhh-hhhhHHHHhhccCCCcchhHHHHHHHHhhcCcchhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHH--HH
Confidence 775 899999999999999999999999999999999999999999999999999999999999999999999998 67
Q ss_pred chHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc---cCChhHHHHHHHHHHhh
Q 004394 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKY 251 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~---~~~~W~Qi~IL~lL~~y 251 (756)
|.+.+.+. ..+.|.+|..+|+.+|+.|.+++- -.+.+++..+. -.++..+|.+++.....
T Consensus 173 w~neiqea-~~s~~~m~QyHalglLyqirk~dr----------------la~sklv~~~~~~~~~~~~A~~~lir~~~~~ 235 (865)
T KOG1078|consen 173 WANEVQEA-VNSDNIMVQYHALGLLYQIRKNDR----------------LAVSKLVQKFTRGSLKSPLAVCMLIRIASEL 235 (865)
T ss_pred HHHhhhhc-cCcHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHHccccccchhHHHHHHHHHHHH
Confidence 99999998 578889999999999999976431 13445554433 35899999999998887
Q ss_pred CCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 252 ~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
..+++.-..-+...+..+|+|....|.+||++.+..+..-... .+......|..|+++..+-+||.+.+.|++++.
T Consensus 236 l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r----~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm 311 (865)
T KOG1078|consen 236 LKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR----ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAM 311 (865)
T ss_pred hhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHh----hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 7666444445778888999999999999999999988753321 123356678889999999999999999999999
Q ss_pred hCCcccc---cccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-
Q 004394 332 RAPFIFA---SDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV- 407 (756)
Q Consensus 332 ~~p~lf~---~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~- 407 (756)
.+|..+. .++..+.- +.-.+|...|+-.|++-.+++|+..+++.+..++.+.+.+|+.-+|.+|..++.+||..
T Consensus 312 ~~P~~v~~cN~elE~lIt--d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~ 389 (865)
T KOG1078|consen 312 KHPQAVTVCNLDLESLIT--DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH 389 (865)
T ss_pred hCCccccccchhHHhhhc--ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH
Confidence 9998543 34444332 22257999999999999999999999999999999999999999999999999999954
Q ss_pred hHHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHH
Q 004394 408 NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYIL 486 (756)
Q Consensus 408 ~~~vd~Ll~LL~~~~~-~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL 486 (756)
..+++.|-.+|...|. .....++.++.+|++.+|+..+..+..||..+ +++..+..-.-+..++|.-|...+++...+
T Consensus 390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI-EDce~~~i~~rILhlLG~EgP~a~~Pskyi 468 (865)
T KOG1078|consen 390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI-EDCEFTQIAVRILHLLGKEGPKAPNPSKYI 468 (865)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH-HhccchHHHHHHHHHHhccCCCCCCcchhh
Confidence 4577777777776654 35667778899999999999888888888886 566666666668999999999999999999
Q ss_pred HHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhHHHHHHHHhc
Q 004394 487 ESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (756)
Q Consensus 487 ~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~ 551 (756)
+.++++...|+ ..||++.++|++|+....+. .++-+.-+|+.|.+|.|.||||||.+|.+.+.
T Consensus 469 r~iyNRviLEn-~ivRaaAv~alaKfg~~~~~-l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 469 RFIYNRVILEN-AIVRAAAVSALAKFGAQDVV-LLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHhhhhhhhh-hhhHHHHHHHHHHHhcCCCC-ccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999865543 45566788999999999999999999999887
No 11
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-30 Score=284.22 Aligned_cols=505 Identities=15% Similarity=0.186 Sum_probs=412.7
Q ss_pred CcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----ccchhhhhhhhccCCChhhHHHHHHHHHHccc
Q 004394 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAK 92 (756)
Q Consensus 18 ~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~D-----vs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~ 92 (756)
++.=.++.+..|.+ +|-...+.+.++-++.|+...|+- +..+|+.+.|+++.+|..+|.-+|+++..+..
T Consensus 20 ~~t~~qd~~~sfn~-----Spvs~r~~r~lls~l~yll~tge~f~e~~at~lff~i~KlFQhkd~~Lrq~VY~aIkelS~ 94 (898)
T COG5240 20 ERTLLQDMNESFNK-----SPVSTRSARKLLSNLFYLLSTGELFPEATATNLFFAILKLFQHKDLYLRQCVYSAIKELSK 94 (898)
T ss_pred HHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhh
Confidence 34445566666654 233335778899999999999973 46689999999999999999999999999988
Q ss_pred cCChHHHHHHHHHHHHcCCCCh-HHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc
Q 004394 93 VNPDLALLTINFLQRDCKDEDP-MIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (756)
Q Consensus 93 ~~~el~lL~iNtl~KDL~s~Np-~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~ 171 (756)
-..|+ +|.+|++.||++..-| .+|..|+|+|-++...+++......+..+..++++-+|..|+...++++-.+-+.+
T Consensus 95 ~tedv-lm~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~- 172 (898)
T COG5240 95 LTEDV-LMGTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGETVYDFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQT- 172 (898)
T ss_pred cchhh-hHHHHHHHHhhccCCccccccHHHHHHHHhcCcchhhhHHHHhhhhccccchhhhhhHHHHhhhhccccHHHH-
Confidence 77775 9999999999998877 99999999999999999999999999999999999999999998888887776666
Q ss_pred CCCchHHHHHhHhc---------------CCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHH----
Q 004394 172 DADFPPTLKHLMLN---------------DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR---- 232 (756)
Q Consensus 172 ~~~~i~~L~~lLL~---------------D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~---- 232 (756)
..|.+...+..++ ..++.-..+|+.+|+.+.+++. ....+|+..
T Consensus 173 -~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dk----------------ma~lklv~hf~~n 235 (898)
T COG5240 173 -KRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDK----------------MAQLKLVEHFRGN 235 (898)
T ss_pred -HHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccH----------------HHHHHHHHHhhcc
Confidence 5576555544221 1356677889999988865432 122333333
Q ss_pred hccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhc
Q 004394 233 IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS 312 (756)
Q Consensus 233 l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLs 312 (756)
..-.+...-+.+++.......+|++....+...+...|++...+|.+|++|.++.+.... +..+.+...+..|.+||+
T Consensus 236 ~smknq~a~V~lvr~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~~vs~L~~fL~ 313 (898)
T COG5240 236 ASMKNQLAGVLLVRATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQTVSSLRTFLK 313 (898)
T ss_pred cccccchhheehHHHHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHh
Confidence 333355667777777777777777766667777788888888999999999999865321 334556667788999999
Q ss_pred CCCcchHHHHHHHHHHHHhhCCccc---ccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHH
Q 004394 313 SGSPEQSYAVLSHLHILVMRAPFIF---ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPI 389 (756)
Q Consensus 313 s~~~nirYvaL~~l~~L~~~~p~lf---~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~ 389 (756)
+...-.||.|+|.|++|++.+|+.+ .++++.+.- +.-..|..-++--|.+-.+++|+..+++.+-.|+.+....|
T Consensus 314 s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIs--d~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~F 391 (898)
T COG5240 314 STRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLIS--DENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGF 391 (898)
T ss_pred cchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhh--cccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCc
Confidence 8888899999999999999999743 334443332 33356889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCh-hHHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHH
Q 004394 390 ARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAA 467 (756)
Q Consensus 390 ~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~~~~~-~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a 467 (756)
+.-+|.++..++.+||.. ..|++.|.+.|...|. .+...++.++.+++...|+..+.+++.+|..+ ++++.++...-
T Consensus 392 KiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fI-EDcey~~I~vr 470 (898)
T COG5240 392 KIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFI-EDCEYHQITVR 470 (898)
T ss_pred eEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH-hhcchhHHHHH
Confidence 999999999999999964 4588988888777665 47778888999999999999999998899887 67889998888
Q ss_pred HHhHhccCCCCCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh-hhHHHHHHHHHhhhcCCChHHHhHHHHH
Q 004394 468 LIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQKVLGAALAAGLADFHQDVHDRALFY 546 (756)
Q Consensus 468 ~iWiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~-e~~~~l~~vL~~~~~d~d~dVrdRA~~Y 546 (756)
++-|+|+.|...+++..+++.++++...|. ..||.+.+.|+.|+.+...+ -.++-+..+|+.|.+|.|.||||||-+.
T Consensus 471 IL~iLG~EgP~a~~P~~yvrhIyNR~iLEN-~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~ 549 (898)
T COG5240 471 ILGILGREGPRAKTPGKYVRHIYNRLILEN-NIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFL 549 (898)
T ss_pred HHHHhcccCCCCCCcchHHHHHHHHHHHhh-hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999776532 3455778899999999999999999999
Q ss_pred HHHhcC
Q 004394 547 HRLLQY 552 (756)
Q Consensus 547 ~rLL~~ 552 (756)
.+-+..
T Consensus 550 l~~~~~ 555 (898)
T COG5240 550 LRNMRL 555 (898)
T ss_pred HHhhhh
Confidence 988774
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.39 E-value=6.4e-11 Score=137.11 Aligned_cols=328 Identities=18% Similarity=0.188 Sum_probs=174.5
Q ss_pred hhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC--hhhhHHH-HHHHHHhhcCC
Q 004394 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEY-LVGPLGLGLKD 146 (756)
Q Consensus 70 ~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~--~~ei~e~-l~~~v~~~L~d 146 (756)
+-+.++|...+-++-=.++... .+|++--..+.+.+=+.|++|+||.-|+-++.++- .|+.++. +.+.+.++|.|
T Consensus 86 kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d 163 (526)
T PF01602_consen 86 KDLNSPNPYIRGLALRTLSNIR--TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQLLSD 163 (526)
T ss_dssp HHHCSSSHHHHHHHHHHHHHH---SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHHHTTH
T ss_pred HhhcCCCHHHHHHHHhhhhhhc--ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhhccC
Confidence 3445566655555555555553 56666666666666666667777766666666652 3555555 56666666666
Q ss_pred CChHHHHHHHHHHHHHhhhcCC----cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhcc
Q 004394 147 NNSYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (756)
Q Consensus 147 ~~pyVRKkAalal~kl~~~~p~----~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~ 222 (756)
++|-|+..|+.++..+ +..|+ .+ +.+...|.++ +.+.+|-+...++.++..+...++... +.
T Consensus 164 ~~~~V~~~a~~~l~~i-~~~~~~~~~~~--~~~~~~L~~~-l~~~~~~~q~~il~~l~~~~~~~~~~~-----~~----- 229 (526)
T PF01602_consen 164 KDPSVVSAALSLLSEI-KCNDDSYKSLI--PKLIRILCQL-LSDPDPWLQIKILRLLRRYAPMEPEDA-----DK----- 229 (526)
T ss_dssp SSHHHHHHHHHHHHHH-HCTHHHHTTHH--HHHHHHHHHH-HTCCSHHHHHHHHHHHTTSTSSSHHHH-----HH-----
T ss_pred CcchhHHHHHHHHHHH-ccCcchhhhhH--HHHHHHhhhc-ccccchHHHHHHHHHHHhcccCChhhh-----hH-----
Confidence 6666666666666666 22222 23 5566666665 466666666666666666665554310 00
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc-chhHHHHHH
Q 004394 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYE 301 (756)
Q Consensus 223 ~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~-~~~~~~~l~ 301 (756)
...+..+.+.+...++=......+++..+.+..+ ....+++.+..++++.++.+.+-+.+.+..+.... +.+.
T Consensus 230 ~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----- 303 (526)
T PF01602_consen 230 NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----- 303 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-----
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-----
Confidence 1133344444444444455555666655554332 44556666666666666666666666666554432 1111
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC-cccccccceeeecCCCCHHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q 004394 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN--ESNTYEIVTEL 378 (756)
Q Consensus 302 rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p-~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n--~~Nv~~Iv~EL 378 (756)
.....+..+..+.++.+|..+|+.+..++.... ..+-+++.. |+....+..+|...+.-+..+|. ..+.+..++-|
T Consensus 304 ~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~-~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l 382 (526)
T PF01602_consen 304 NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLK-YLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTL 382 (526)
T ss_dssp THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHH
T ss_pred hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHH-HHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHH
Confidence 011112222335566666666666666654321 111111111 12222234466666655555552 34556666666
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHhhh
Q 004394 379 CEYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEM 420 (756)
Q Consensus 379 ~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~~ 420 (756)
.+.+...+..+..+++..|..+..++|+. .+.+..+.+++..
T Consensus 383 ~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~ 425 (526)
T PF01602_consen 383 LKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLED 425 (526)
T ss_dssp HHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTS
T ss_pred HHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHH
Confidence 66666555555666666666666666543 4556666666654
No 13
>PTZ00429 beta-adaptin; Provisional
Probab=99.33 E-value=5.9e-08 Score=115.78 Aligned_cols=494 Identities=14% Similarity=0.148 Sum_probs=275.0
Q ss_pred HHcCCCChHHHHHHHHHHhcCC--hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh
Q 004394 107 RDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML 184 (756)
Q Consensus 107 KDL~s~Np~iR~LALrtLs~I~--~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL 184 (756)
|=+.++|..+|-+.--.+.++. .++.+-..+..+++-+.|++|+||--|+-++.++-- |+.+ +.....+++. +
T Consensus 75 k~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~--e~l~~~lkk~-L 149 (746)
T PTZ00429 75 KLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVL--EYTLEPLRRA-V 149 (746)
T ss_pred HHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHH--HHHHHHHHHH-h
Confidence 3556788888877755555553 377777889999999999999999999988876543 4444 4456778887 6
Q ss_pred cCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhH---HHH
Q 004394 185 NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE---IFD 261 (756)
Q Consensus 185 ~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e---~~~ 261 (756)
.|++|-|.-+|+.++..+...+|+.. . ....+.+|...+.+.++-.+...+.+|......+++. ...
T Consensus 150 ~D~~pYVRKtAalai~Kly~~~pelv----~------~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~ 219 (746)
T PTZ00429 150 ADPDPYVRKTAAMGLGKLFHDDMQLF----Y------QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSNE 219 (746)
T ss_pred cCCCHHHHHHHHHHHHHHHhhCcccc----c------ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHHH
Confidence 99999999999999999988776521 1 1113445556678899999999999888886554432 233
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-Ccccccc
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASD 340 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~-p~lf~~~ 340 (756)
.+..+...|...+.=-....++++....+....-. ..+...+...|+++++-+-+-+.+.+..+.... |.++..-
T Consensus 220 ~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~ 295 (746)
T PTZ00429 220 WVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC 295 (746)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH
Confidence 34444455555554334445555555554332211 233444556677777766666666666554321 2222111
Q ss_pred ---c-c-eeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HhhhCCHH-HHHHHHHHHHHHHhhcCChhHHHHH
Q 004394 341 ---Y-K-HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE-YAANVDIP-IARESIRAVGKIALQQYDVNAIVDR 413 (756)
Q Consensus 341 ---~-~-~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~-Yl~~~D~~-~~~~~I~aIg~lA~k~~~~~~~vd~ 413 (756)
+ . .++.. +.+.-+|...|+-|..++... -..+..++.. |..-.|+. ++.+.+.-+-.+|.. .++...++-
T Consensus 296 ~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lane-~Nv~~IL~E 372 (746)
T PTZ00429 296 TVRVNTALLTLS-RRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVTP-SVAPEILKE 372 (746)
T ss_pred HHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcCc-ccHHHHHHH
Confidence 1 0 11222 333457777776665555422 2223333322 34444543 555556666555533 133445555
Q ss_pred HHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCC-chhHHHHHHhHhccCCCCCCChHHHHHHHhhh
Q 004394 414 LLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQDAPYILESLTEN 492 (756)
Q Consensus 414 Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~-~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~~~ 492 (756)
|.+........+..+++..+..+..++|...+.|+..+.+++..... -.++..++--|+-.|.+. .++..+++.
T Consensus 373 L~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~-----~il~~L~~~ 447 (746)
T PTZ00429 373 LAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL-----LMLDTLVTD 447 (746)
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH-----HHHHHHHHh
Confidence 55655555557888899999999999999888888888777643211 123344444455555442 255566654
Q ss_pred h--ccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhHHHH-HHHHhcCCHHHHHhhcCCCCCCCc
Q 004394 493 W--EEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALF-YHRLLQYNVSVAERVVNPPKQAVS 569 (756)
Q Consensus 493 f--~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~-Y~rLL~~~~e~a~~vv~~~~p~i~ 569 (756)
+ .....++.|..++=.+.-+.-..+ ...+++..+++.+. +.+++||--..- .-+++-..|+..+..+.. ...
T Consensus 448 ~~~~~i~e~~AKaaiiWILGEy~~~I~-~a~~~L~~~i~~f~-~E~~~VqlqlLta~vKlfl~~p~~~~~~l~~---vL~ 522 (746)
T PTZ00429 448 YGADEVVEEEAKVSLLWMLGEYCDFIE-NGKDIIQRFIDTIM-EHEQRVQLAILSAAVKMFLRDPQGMEPQLNR---VLE 522 (746)
T ss_pred hcccccccHHHHHHHHHHHHhhHhhHh-hHHHHHHHHHhhhc-cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHH---HHH
Confidence 4 222227778774444444322222 23445555544332 246777533221 123333344322222210 011
Q ss_pred c-cccCCChHHHHHHHhhc-----Cc----c-hhhccC-CCCccccCCCCCC---ccccccccccccccccc-Ccccccc
Q 004394 570 V-FADTQSSEIKDRIFDEF-----NS----L-SVVYQK-PSYMFTDKDYRGP---FEFSDELGNLSIAAESA-DNVVPAQ 633 (756)
Q Consensus 570 ~-~~~~~~~~~~~~l~~~~-----~t----l-s~vy~k-p~~~f~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~ 633 (756)
. -.++.+++++|+-+.-. +. . .+|... |+ .-....+..+ .++..+++.++..=++| ..++...
T Consensus 523 ~~t~~~~d~DVRDRA~~Y~rLLs~~~~~~~a~~iv~~~~~~-i~~~~~~~d~~~l~~L~~~~~tlssvY~kp~~~f~~~~ 601 (746)
T PTZ00429 523 TVTTHSDDPDVRDRAFAYWRLLSKGITVAQMKKVVHGQMVP-VNVDSTFSDAMTMADLKKSLNTAAIVFARPYQSFLPPY 601 (746)
T ss_pred HHHhcCCChhHHHHHHHHHHHHcCCCcHHHHHHHHcCCCCC-CCcccccCCHHHHHHHHHhcCceeeeecCCHHHhcCch
Confidence 1 12345667877743211 21 1 233333 33 1122122222 35566677777777777 4455433
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.12 E-value=9.6e-07 Score=113.21 Aligned_cols=413 Identities=16% Similarity=0.064 Sum_probs=240.7
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH
Q 004394 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 136 l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
.++.+.++|++.+|.++..|+.++.++...+++ .+.+.+.++.|.++|-++.++.|.-+|+.+|..|+..+++.-
T Consensus 190 aVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r-- 267 (2102)
T PLN03200 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK-- 267 (2102)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHH--
Confidence 677888899999999999999999888766553 234678899999984235677999999999999987543210
Q ss_pred HHHHHHhhccHHHHHHHHHHhccCC---------hhHHHHHHHHHHhhCCC----------------C------------
Q 004394 213 ASREREALISKPVIYYLLNRIKEFS---------EWAQCLVLELVAKYVPL----------------D------------ 255 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~l~~~~---------~W~Qi~IL~lL~~y~p~----------------d------------ 255 (756)
...+....+..|++.+...+ .=.|-..+..|...+.. +
T Consensus 268 -----~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALa 342 (2102)
T PLN03200 268 -----QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALA 342 (2102)
T ss_pred -----HHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHH
Confidence 01111112222332221110 10111111222111110 0
Q ss_pred --------hhHHH------HHHHHHHHHhcccch------------------------------------------HHHH
Q 004394 256 --------SNEIF------DIMNLLEDRLQHANG------------------------------------------AVVL 279 (756)
Q Consensus 256 --------~~e~~------~il~~l~~~L~~~n~------------------------------------------aVvl 279 (756)
+.+.. .+...+..+++|.++ -+.-
T Consensus 343 yll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~ 422 (2102)
T PLN03200 343 YALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQE 422 (2102)
T ss_pred HHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHH
Confidence 00000 011233444444433 3344
Q ss_pred HHHHHHHhhccccchhHHHHHHH-HHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc----ccccc-ccee-eecCCCCH
Q 004394 280 STIKVFLHLTLSMTDVHQQVYER-IKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQYNEPS 352 (756)
Q Consensus 280 eaik~ii~l~~~~~~~~~~~l~r-l~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~----lf~~~-~~~f-~c~~~dp~ 352 (756)
.++.++.++.....+..+.+.++ ..++|+.||.+++.++|..++..+..|....++ +.... +..+ -++.+.+.
T Consensus 423 ~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~ 502 (2102)
T PLN03200 423 ELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ 502 (2102)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 44444444433222222222222 456899999988999999999999888764432 11111 1222 23456667
Q ss_pred HHHHHHHHHHHHhcC-CCCHHHHH------HHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchh
Q 004394 353 YVKKLKLEMLTAVAN-ESNTYEIV------TELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYV 425 (756)
Q Consensus 353 ~IK~~kLdIL~~L~n-~~Nv~~Iv------~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v 425 (756)
.+|..+...|..++. +.|+..++ .-|.+.+.+.+.+.++.+..+|+.++... + ...+..++.++...+..+
T Consensus 503 ~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~-d-~~~I~~Lv~LLlsdd~~~ 580 (2102)
T PLN03200 503 KAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTA-D-AATISQLTALLLGDLPES 580 (2102)
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhcc-c-hhHHHHHHHHhcCCChhH
Confidence 899999999999984 55766655 35778888889999999999999997642 2 235577888887777666
Q ss_pred hHHHHHHHHHHHhhCCCc--c------hHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCCh------HHHHHHHhh
Q 004394 426 TAEALVLVKDLLRKYPQW--S------HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA------PYILESLTE 491 (756)
Q Consensus 426 ~~E~i~~i~~Il~~~p~~--~------~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~------~~iL~~l~~ 491 (756)
...++.++..|+.--... + ..++..+.+++. -..++.+..++|+|+.|+..-.+. ...+..++.
T Consensus 581 ~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~--sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~ 658 (2102)
T PLN03200 581 KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS--SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIK 658 (2102)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHH
Confidence 666666666665422211 1 124455566653 245678888899999998743321 122445555
Q ss_pred hhccCChHHHHHHHHHHhhHhhhcCChh-hHH-----HHHHHHHhhhcCCChHHHhHHHHHHHHhcCCHHHHHhhc
Q 004394 492 NWEEEPSAEVRLHLLTAVMKCFFKRPPE-TQK-----VLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVAERVV 561 (756)
Q Consensus 492 ~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e-~~~-----~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~e~a~~vv 561 (756)
.....+ .++|...-.|+.-++.....+ ... .+..+++.. .+.|.++++-|..-...+-.+++.+..+.
T Consensus 659 LLss~~-~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL-~~~d~~v~e~Al~ALanLl~~~e~~~ei~ 732 (2102)
T PLN03200 659 LLTNNT-EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLA-KSSSIEVAEQAVCALANLLSDPEVAAEAL 732 (2102)
T ss_pred HHhcCC-hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHH-hCCChHHHHHHHHHHHHHHcCchHHHHHH
Confidence 555555 778888777777777432211 111 122333332 45678888888877555555545444443
No 15
>PRK09687 putative lyase; Provisional
Probab=99.07 E-value=9.4e-09 Score=110.00 Aligned_cols=240 Identities=14% Similarity=0.042 Sum_probs=143.6
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
+.++.|.+=|.|+|..+|..|+.+|+.++.++..+. +.+++.|+++.||+.|+-++..+-..... .....+.|
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~----l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a~~~L 95 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRL----AIELCSSKNPIERDIGADILSQLGMAKRC---QDNVFNIL 95 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHH----HHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHHHHHH
Confidence 346777788899999999999999999998776554 56678999999999999999987542111 12356777
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~ 259 (756)
..++++|+|+.|..+|+.+|..++...+.. .+
T Consensus 96 ~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~------------~~------------------------------------ 127 (280)
T PRK09687 96 NNLALEDKSACVRASAINATGHRCKKNPLY------------SP------------------------------------ 127 (280)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccccccccc------------ch------------------------------------
Confidence 776679999999999999998875322110 00
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccc
Q 004394 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~ 339 (756)
..++.+...+.+.+.-|.+.++..+..+.. ....++|+.+|.++++.+|+-+...|..+-...|..+..
T Consensus 128 -~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~ 196 (280)
T PRK09687 128 -KIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREA 196 (280)
T ss_pred -HHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 122333344555566666666666655432 123455666666666666666666665441112211110
Q ss_pred ccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 004394 340 DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLE 419 (756)
Q Consensus 340 ~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~ 419 (756)
.+-.+.|.+..||..++.-|-.+-++ ..++-|.+++.+.+ ++..++.++|.++.+ ..+..|.+++.
T Consensus 197 ---L~~~L~D~~~~VR~~A~~aLg~~~~~----~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-----~a~p~L~~l~~ 262 (280)
T PRK09687 197 ---FVAMLQDKNEEIRIEAIIGLALRKDK----RVLSVLIKELKKGT--VGDLIIEAAGELGDK-----TLLPVLDTLLY 262 (280)
T ss_pred ---HHHHhcCCChHHHHHHHHHHHccCCh----hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----hHHHHHHHHHh
Confidence 01112333445555555555554443 33333444444333 445666666665543 34455555554
No 16
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.05 E-value=4.5e-08 Score=120.66 Aligned_cols=271 Identities=19% Similarity=0.156 Sum_probs=141.7
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHH
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~ 181 (756)
++.|..-|.|++|.+|-.|+..|+.+..++.+ +.|.+.|.|+++.||..|+-++.++-...+. .+.|..
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~----~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~ 691 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETTPPGFG----PALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD 691 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhcchhHH----HHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence 35666666677777777777777766655433 3444556667777777666666655321111 233444
Q ss_pred hHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH
Q 004394 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (756)
Q Consensus 182 lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~ 261 (756)
+ |.|+|+.|..+|+.+|..+...+ ...|+..+.+.+++.+...++.|......
T Consensus 692 ~-L~~~d~~VR~~A~~aL~~~~~~~-------------------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~------- 744 (897)
T PRK13800 692 H-LGSPDPVVRAAALDVLRALRAGD-------------------AALFAAALGDPDHRVRIEAVRALVSVDDV------- 744 (897)
T ss_pred H-hcCCCHHHHHHHHHHHHhhccCC-------------------HHHHHHHhcCCCHHHHHHHHHHHhcccCc-------
Confidence 4 46667777766666666543110 01233445666666666666666654211
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccc
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~ 341 (756)
+.+...+.+.+..|..++++.+..+...... ....|..++.+.++++|..++..|..+-... .+...
T Consensus 745 --~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~--------~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-~~~~~-- 811 (897)
T PRK13800 745 --ESVAGAATDENREVRIAVAKGLATLGAGGAP--------AGDAVRALTGDPDPLVRAAALAALAELGCPP-DDVAA-- 811 (897)
T ss_pred --HHHHHHhcCCCHHHHHHHHHHHHHhccccch--------hHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-hhHHH--
Confidence 2234456666666666666666665432110 1233555666666666666666665442110 01000
Q ss_pred ceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhc
Q 004394 342 KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME 421 (756)
Q Consensus 342 ~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~ 421 (756)
..-.+.|++..||..+++-|-.+.++. .+.-|...+.+.|..++++++++++.+. ......+.|...++..
T Consensus 812 -l~~aL~d~d~~VR~~Aa~aL~~l~~~~----a~~~L~~~L~D~~~~VR~~A~~aL~~~~----~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 812 -ATAALRASAWQVRQGAARALAGAAADV----AVPALVEALTDPHLDVRKAAVLALTRWP----GDPAARDALTTALTDS 882 (897)
T ss_pred -HHHHhcCCChHHHHHHHHHHHhccccc----hHHHHHHHhcCCCHHHHHHHHHHHhccC----CCHHHHHHHHHHHhCC
Confidence 111234445566666666666654432 2334444555666666666666666641 1112334455555544
Q ss_pred CchhhHHHHHH
Q 004394 422 KDYVTAEALVL 432 (756)
Q Consensus 422 ~~~v~~E~i~~ 432 (756)
...|..+++..
T Consensus 883 d~~Vr~~A~~a 893 (897)
T PRK13800 883 DADVRAYARRA 893 (897)
T ss_pred CHHHHHHHHHH
Confidence 44444444433
No 17
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.03 E-value=1.4e-07 Score=120.75 Aligned_cols=427 Identities=16% Similarity=0.106 Sum_probs=287.6
Q ss_pred hhhccCCChhhHHHHHHHHHHccccCChHHH-----HHHHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhH-----HHH
Q 004394 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLV-----EYL 136 (756)
Q Consensus 69 i~l~~s~d~~~KkL~YLyl~~~~~~~~el~l-----L~iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~-----e~l 136 (756)
+.++.+.+.+.+.=.-..+..+.+.+.+... ..++.|.+-|.+.++.++-.|++++++|.. .+-. .-.
T Consensus 410 V~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 410 VGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 4455555666666666666666655555422 257899999999999999999999998842 3322 345
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHH
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~ 213 (756)
+|++.++|.++++.+|+.|+-++..+....++ .+.+.+.++.|.++ |++.++.+...|+.+|..+.....
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~L-L~sgd~~~q~~Aa~AL~nLi~~~d------ 562 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWL-LKNGGPKGQEIAAKTLTKLVRTAD------ 562 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHhccc------
Confidence 89999999999999999999999998863322 33356788888897 688999999999999999865321
Q ss_pred HHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC-ChhH-------HHHHHHHHHHHhcccchHHHHHHHHHH
Q 004394 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNE-------IFDIMNLLEDRLQHANGAVVLSTIKVF 285 (756)
Q Consensus 214 ~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~-d~~e-------~~~il~~l~~~L~~~n~aVvleaik~i 285 (756)
...+..++..+...++=.+..+++.+...... +.++ ....++.+..+|+|.+..+.-+|+.++
T Consensus 563 ---------~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 563 ---------AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred ---------hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11334566666666666777788888765331 1111 124678899999999999999999999
Q ss_pred HhhccccchhHHHH-HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC-----cccccccceeee--cCCCCHHHHHH
Q 004394 286 LHLTLSMTDVHQQV-YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-----FIFASDYKHFYC--QYNEPSYVKKL 357 (756)
Q Consensus 286 i~l~~~~~~~~~~~-l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p-----~lf~~~~~~f~c--~~~dp~~IK~~ 357 (756)
..+....++..+.+ .....+||+.+|++++.+++.-+-..|..+..... .++....-.-+| +.+.+..++..
T Consensus 634 snL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~ 713 (2102)
T PLN03200 634 ADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQ 713 (2102)
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHH
Confidence 98877666544333 34577899999999999999888888887774211 112222211122 24566789999
Q ss_pred HHHHHHHhcCCC-CHH-----HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcC--C-h------hHHHHHHHHHhhhcC
Q 004394 358 KLEMLTAVANES-NTY-----EIVTELCEYAANVDIPIARESIRAVGKIALQQY--D-V------NAIVDRLLQFLEMEK 422 (756)
Q Consensus 358 kLdIL~~L~n~~-Nv~-----~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~--~-~------~~~vd~Ll~LL~~~~ 422 (756)
+++.|..++... +.. .++.-|.+++++.+.+-++.++.++..++..++ + . ..+|.-|+++|+..+
T Consensus 714 Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~ 793 (2102)
T PLN03200 714 AVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTD 793 (2102)
T ss_pred HHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCC
Confidence 999999987554 443 346788999999999999999999999999987 2 1 124667788887544
Q ss_pred c--hhhHHHHHHHHHHHhh-------CCCcchH-----HHHHHHHhhhccCCchhHHHHHHhHhccCCCC--------CC
Q 004394 423 D--YVTAEALVLVKDLLRK-------YPQWSHD-----CIAVVGSISSQNVQEPKAKAALIWMLGEYSQD--------MQ 480 (756)
Q Consensus 423 ~--~v~~E~i~~i~~Il~~-------~p~~~~~-----~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~--------i~ 480 (756)
. ....|++.++..+.|. +|-+..- .+.-+...+ ....|.....++-+|...|.. +.
T Consensus 794 ~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l--~~~~p~~~~kai~il~~~~~~~~~~~~~~~~ 871 (2102)
T PLN03200 794 LDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL--AEGHPLVQDKAIEILSRLCRDQPVVLGDLIA 871 (2102)
T ss_pred cchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH--HcCChHHHHHHHHHHHHHhccChhHHHHHHh
Confidence 2 3344677888777773 2222210 011111111 224455544455555554433 22
Q ss_pred ChHHHHHHHhhhhccCChHHHH---HHHHHHhhHhh
Q 004394 481 DAPYILESLTENWEEEPSAEVR---LHLLTAVMKCF 513 (756)
Q Consensus 481 ~~~~iL~~l~~~f~~e~~~~Vq---~~lLtA~~Kl~ 513 (756)
+.+.-+..+.++....++.+|| ..+|-+++|-.
T Consensus 872 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 907 (2102)
T PLN03200 872 NASKCISSLADRIINSSSLEVKIGGTALLICAAKEH 907 (2102)
T ss_pred cccchHHHHHHHHhhcCCceEEecchhhhhhhhhhh
Confidence 3444556666776666657777 46777777754
No 18
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=98.97 E-value=2.1e-08 Score=100.33 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=113.1
Q ss_pred ChHHHHHHHHHHh--cCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChh
Q 004394 113 DPMIRGLALRSLC--SLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (756)
Q Consensus 113 Np~iR~LALrtLs--~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~ 190 (756)
||.+|+.|+.+|| +++-+.+++...+.+.++|.|++|+|||.|++++.++...+.-.+. ..+...+..+ +.|+|+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-~~l~~~~l~~-l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-GQLFSRILKL-LVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-hhhhHHHHHH-HcCCCHH
Confidence 7899999999999 6788999999999999999999999999999999999987665553 2332444455 5899999
Q ss_pred HHHHHHHHHHHHHhh-cccchhHHHHHHHhhccHHHHHHHHHHhccCChhH---------HHHHHHHHHhhCCCChhHHH
Q 004394 191 VVANCLSALQEIWSL-EASTSEEASREREALISKPVIYYLLNRIKEFSEWA---------QCLVLELVAKYVPLDSNEIF 260 (756)
Q Consensus 191 Vv~~Al~aL~eI~~~-~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~---------Qi~IL~lL~~y~p~d~~e~~ 260 (756)
|...|...+.++... +|+. + .+.+..++..++.+.+|. ...|++++-.+... ++..+
T Consensus 79 Ir~~A~~~~~e~~~~~~~~~-----------i-~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~-d~~~~ 145 (178)
T PF12717_consen 79 IRSLARSFFSELLKKRNPNI-----------I-YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDK-DKQKE 145 (178)
T ss_pred HHHHHHHHHHHHHHhccchH-----------H-HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCc-HHHHH
Confidence 999999999999876 3331 1 234566666777776664 45788887777654 45566
Q ss_pred HHHHHHHHHhcccc
Q 004394 261 DIMNLLEDRLQHAN 274 (756)
Q Consensus 261 ~il~~l~~~L~~~n 274 (756)
.+++.+..++.+..
T Consensus 146 ~l~~kl~~~~~~~~ 159 (178)
T PF12717_consen 146 SLVEKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHHHHc
Confidence 77777766665443
No 19
>PRK09687 putative lyase; Provisional
Probab=98.96 E-value=1e-07 Score=102.05 Aligned_cols=255 Identities=15% Similarity=0.061 Sum_probs=144.8
Q ss_pred CCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCCh
Q 004394 17 SGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD 96 (756)
Q Consensus 17 ~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~e 96 (756)
+++..+.+|...|.+ .+...|..+++-+ .-.|.+- .|..+.+++.++|...|+.+=-.+..+-.....
T Consensus 20 ~~~~~~~~L~~~L~d-------~d~~vR~~A~~aL---~~~~~~~--~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~ 87 (280)
T PRK09687 20 CKKLNDDELFRLLDD-------HNSLKRISSIRVL---QLRGGQD--VFRLAIELCSSKNPIERDIGADILSQLGMAKRC 87 (280)
T ss_pred HhhccHHHHHHHHhC-------CCHHHHHHHHHHH---HhcCcch--HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc
Confidence 344455555555543 2223444444322 2334322 366666777777777777776666666442211
Q ss_pred HHHHHHHHHHHH-cCCCChHHHHHHHHHHhcCChhhh--HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCC
Q 004394 97 LALLTINFLQRD-CKDEDPMIRGLALRSLCSLRVANL--VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDA 173 (756)
Q Consensus 97 l~lL~iNtl~KD-L~s~Np~iR~LALrtLs~I~~~ei--~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~ 173 (756)
.--+.+.|..= ++|+++.||+.|+.+||.++.... ...+...+...+.|+++.||+.|+.++.++- ++
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~ 158 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DE 158 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CH
Confidence 01122222222 367777777777777777754432 2334455666677777777777777775442 13
Q ss_pred CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCC
Q 004394 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP 253 (756)
Q Consensus 174 ~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p 253 (756)
..++.|..+ ++|+|+.|...|+.+|..+.... +..+..|+..+.+.+++.+...+..|.++..
T Consensus 159 ~ai~~L~~~-L~d~~~~VR~~A~~aLg~~~~~~----------------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 159 AAIPLLINL-LKDPNGDVRNWAAFALNSNKYDN----------------PDIREAFVAMLQDKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHH-hcCCCHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHhcCCChHHHHHHHHHHHccCC
Confidence 346666676 57777777777777777662111 1234456666677777777777777776532
Q ss_pred CChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHH
Q 004394 254 LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS-SGSPEQSYAVLSHLH 327 (756)
Q Consensus 254 ~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLs-s~~~nirYvaL~~l~ 327 (756)
+ ..++.|...|++.. |..+++..+..+... +..+.|..++. ..|+.++-.+...+.
T Consensus 222 --~----~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 --K----RVLSVLIKELKKGT--VGDLIIEAAGELGDK----------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred --h----hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH----------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 1 35566666666544 555666666665431 24455666664 456666655555543
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.95 E-value=1.8e-07 Score=115.38 Aligned_cols=257 Identities=17% Similarity=0.129 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHH
Q 004394 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (756)
Q Consensus 114 p~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~ 193 (756)
+..|-+|+.++ ..+ ..+.+...|.|++|.||+.|+.++.++.. ++.++.|..+ ++|+|+.|..
T Consensus 608 ~~~~~~~~~~l---~~~-----~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~a-L~D~d~~VR~ 670 (897)
T PRK13800 608 PSPRILAVLAL---DAP-----SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAA-LGDGAAAVRR 670 (897)
T ss_pred chHHHHHHHhc---cch-----hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHH-HcCCCHHHHH
Confidence 34444555555 222 34467788899999999999999998752 4457788887 6999999999
Q ss_pred HHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccc
Q 004394 194 NCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA 273 (756)
Q Consensus 194 ~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~ 273 (756)
.|+.+|.++....+. ...|...+.+.+++.+..+++.|......+. ..+...|++.
T Consensus 671 ~Aa~aL~~l~~~~~~-----------------~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~-------~~l~~~L~D~ 726 (897)
T PRK13800 671 AAAEGLRELVEVLPP-----------------APALRDHLGSPDPVVRAAALDVLRALRAGDA-------ALFAAALGDP 726 (897)
T ss_pred HHHHHHHHHHhccCc-----------------hHHHHHHhcCCCHHHHHHHHHHHHhhccCCH-------HHHHHHhcCC
Confidence 999999988532111 1234455677899999999999987654432 2455678889
Q ss_pred chHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHH
Q 004394 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSY 353 (756)
Q Consensus 274 n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~ 353 (756)
++.|..+|++.+..+... ..|..++.+.++++|..+.+.|..+-...+..+.. ..-...|++..
T Consensus 727 d~~VR~~Av~aL~~~~~~-------------~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~---L~~ll~D~d~~ 790 (897)
T PRK13800 727 DHRVRIEAVRALVSVDDV-------------ESVAGAATDENREVRIAVAKGLATLGAGGAPAGDA---VRALTGDPDPL 790 (897)
T ss_pred CHHHHHHHHHHHhcccCc-------------HHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHH---HHHHhcCCCHH
Confidence 999999999998876421 13456788888999998888887775443321111 01122455567
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHH
Q 004394 354 VKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (756)
Q Consensus 354 IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i 433 (756)
||..++.-|-.+.++.. ++..|...+.+.|..++..++.+++.+... ..++.|+.+|+.....|..+++..+
T Consensus 791 VR~aA~~aLg~~g~~~~---~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~-----~a~~~L~~~L~D~~~~VR~~A~~aL 862 (897)
T PRK13800 791 VRAAALAALAELGCPPD---DVAAATAALRASAWQVRQGAARALAGAAAD-----VAVPALVEALTDPHLDVRKAAVLAL 862 (897)
T ss_pred HHHHHHHHHHhcCCcch---hHHHHHHHhcCCChHHHHHHHHHHHhcccc-----chHHHHHHHhcCCCHHHHHHHHHHH
Confidence 77777777777655432 223355566667777777777777664321 2345555555554444544444444
Q ss_pred HH
Q 004394 434 KD 435 (756)
Q Consensus 434 ~~ 435 (756)
..
T Consensus 863 ~~ 864 (897)
T PRK13800 863 TR 864 (897)
T ss_pred hc
Confidence 33
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.90 E-value=4.6e-06 Score=96.61 Aligned_cols=393 Identities=19% Similarity=0.214 Sum_probs=250.1
Q ss_pred hhhccCCChhhHHHHHHHHHHcccc-CChH-HHHHHHHHHHHcCCCChHHHHHHHHHHhcCCh-h-h-----hHHHHHHH
Q 004394 69 VMCSATSDIVLKKMCYLYVGNYAKV-NPDL-ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV-A-N-----LVEYLVGP 139 (756)
Q Consensus 69 i~l~~s~d~~~KkL~YLyl~~~~~~-~~el-~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~-~-e-----i~e~l~~~ 139 (756)
..++++++-+.--++--.+..++.. .++- .--....+++-|.|+||.||.+|++.++++.. . . .-..+++.
T Consensus 44 f~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~ 123 (503)
T PF10508_consen 44 FDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPL 123 (503)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHH
Confidence 4567776655544444445544433 3332 33456788999999999999999999998632 2 1 12567888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhhcCCc--ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHH
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~kl~~~~p~~--~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~ 217 (756)
|..++.|++..|.+.|+-++.++.+..+.. +.+++....|.+++ ...|..|...++.++.+|...++... +.|
T Consensus 124 i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~--- 198 (503)
T PF10508_consen 124 IIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEAA-EAV--- 198 (503)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHHH-HHH---
Confidence 999999999999999999999998755443 33456688898874 55588899999999999987765421 111
Q ss_pred HhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHhccc------chHHHHHHHHHHHh
Q 004394 218 EALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRLQHA------NGAVVLSTIKVFLH 287 (756)
Q Consensus 218 ~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e----~~~il~~l~~~L~~~------n~aVvleaik~ii~ 287 (756)
....++..+++.+.+-|.-.|...+++|..++..+..- ...+++.+...+.+. +.-.+...++.+.+
T Consensus 199 ---~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~ 275 (503)
T PF10508_consen 199 ---VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGN 275 (503)
T ss_pred ---HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHH
Confidence 22236778888888888899999999999987633221 123556666666543 22245566677776
Q ss_pred hccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcC
Q 004394 288 LTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN 367 (756)
Q Consensus 288 l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n 367 (756)
+....+.-....+..+...|..++.+.|+..+-+|++++..|.... ...++| ....
T Consensus 276 la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-----------------------~G~~~L-~~~~ 331 (503)
T PF10508_consen 276 LARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-----------------------EGKQLL-LQKQ 331 (503)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-----------------------HHHHHH-Hhhc
Confidence 6542221111222334445566778899999999999998776331 111222 3345
Q ss_pred CCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcc
Q 004394 368 ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD--VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWS 444 (756)
Q Consensus 368 ~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~--~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~-p~~~ 444 (756)
...+..+++....+..+...+++..++.+++.+-...++ .+......-.+.+.-++.-... .+.+++++= |+++
T Consensus 332 ~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr 408 (503)
T PF10508_consen 332 GPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELR 408 (503)
T ss_pred chHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHH
Confidence 667888899999999998999999999999988544332 2223322333333222111111 566666653 7877
Q ss_pred hHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHHHHhhhhccCChHH---HHHHHHHHhhHh
Q 004394 445 HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAE---VRLHLLTAVMKC 512 (756)
Q Consensus 445 ~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~---Vq~~lLtA~~Kl 512 (756)
-.+..++..+. .--|.+=+... .+.+++.++++-.+.+ .+ -|..++.+++|.
T Consensus 409 ~a~~~~l~~l~-----------~~~Wg~~~i~~----~~gfie~lldr~~E~~-K~~ke~K~~ii~~l~~~ 463 (503)
T PF10508_consen 409 CAAYRLLQALA-----------AQPWGQREICS----SPGFIEYLLDRSTETT-KEGKEAKYDIIKALAKS 463 (503)
T ss_pred HHHHHHHHHHh-----------cCHHHHHHHHh----CccHHhhhcCCCCCCC-HHHHHHHHHHHHHHHhc
Confidence 65554554443 12366555432 4567788887766544 33 344455555443
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.64 E-value=2.3e-05 Score=90.92 Aligned_cols=332 Identities=14% Similarity=0.172 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHhcCCCccchhhh----hhhhccCCChhhHHHHHHHHHHccccCChHHHHH-----HHHHHHHcCCCCh
Q 004394 44 KRELFKKVISYMTIGIDVSAVFGE----MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT-----INFLQRDCKDEDP 114 (756)
Q Consensus 44 kk~~lkKlI~~~~lG~Dvs~lF~~----Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~-----iNtl~KDL~s~Np 114 (756)
..+..+.+|.......+...+.++ +...+..++-.+|+++--.+.++++.+...+-++ ...+..-+.++|.
T Consensus 54 ~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~ 133 (503)
T PF10508_consen 54 QVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL 133 (503)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH
Confidence 344555555555444444333333 3467888999999998888888887654433322 3456667789999
Q ss_pred HHHHHHHHHHhcCC-hhhhHHHH-----HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhc
Q 004394 115 MIRGLALRSLCSLR-VANLVEYL-----VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLN 185 (756)
Q Consensus 115 ~iR~LALrtLs~I~-~~ei~e~l-----~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~ 185 (756)
.+...|+++|.++. .+...+.+ ...+.+++..++..||-++.-.+.++...+++.. .+.++++.+.+. ++
T Consensus 134 ~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e-L~ 212 (503)
T PF10508_consen 134 SVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE-LD 212 (503)
T ss_pred HHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH-hc
Confidence 99999999999984 34444555 7888888888899999999999999999888764 456788888887 58
Q ss_pred CCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhcc--CCh-hHHHHH---HHHHHhhCCCChhHH
Q 004394 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE--FSE-WAQCLV---LELVAKYVPLDSNEI 259 (756)
Q Consensus 186 D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~--~~~-W~Qi~I---L~lL~~y~p~d~~e~ 259 (756)
+.|..|..||+-+|.+++....+ ..++....++.+|++.+.+ .+| +.-+.+ ++++......++...
T Consensus 213 ~dDiLvqlnalell~~La~~~~g--------~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v 284 (503)
T PF10508_consen 213 SDDILVQLNALELLSELAETPHG--------LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV 284 (503)
T ss_pred CccHHHHHHHHHHHHHHHcChhH--------HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH
Confidence 89999999999999999874322 1233334467788877654 355 544444 344444333343333
Q ss_pred ----HHHHHHHHHHhcccchHHHHHHHHHHHhhccccch---h-H--HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 004394 260 ----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD---V-H--QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (756)
Q Consensus 260 ----~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~---~-~--~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L 329 (756)
..+++.+...+.+.+......|+-++..+..+... + . ...++.+.........++..++|--+|+++..+
T Consensus 285 ~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 285 LELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 34666667777777777776667676666543221 1 0 011222333344456667789999999999999
Q ss_pred HhhCCc-----c---cc-------cc-cc-eeeecCCCC-HHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHhhh
Q 004394 330 VMRAPF-----I---FA-------SD-YK-HFYCQYNEP-SYVKKLKLEMLTAVANESNTYEIV---TELCEYAAN 384 (756)
Q Consensus 330 ~~~~p~-----l---f~-------~~-~~-~f~c~~~dp-~~IK~~kLdIL~~L~n~~Nv~~Iv---~EL~~Yl~~ 384 (756)
....+. + .. .. .. .|.-....| .-||.-.+.+|..||...-...-+ .++.+|+.+
T Consensus 365 l~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lld 440 (503)
T PF10508_consen 365 LTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLD 440 (503)
T ss_pred HhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcC
Confidence 654332 1 10 00 01 122122445 668888888888888776433322 255677754
No 23
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=7.3e-05 Score=84.05 Aligned_cols=313 Identities=17% Similarity=0.159 Sum_probs=214.3
Q ss_pred HHHHHHHHHhc-CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHhcCCChhHH
Q 004394 116 IRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVV 192 (756)
Q Consensus 116 iR~LALrtLs~-I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL~D~d~~Vv 192 (756)
..|+|.-++|- .......+.+.++|..|++|++.-||--|+.+++.+.+.....+. -+++.+.+.++ -.|.|..|.
T Consensus 64 LiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~kl-saDsd~~V~ 142 (675)
T KOG0212|consen 64 LIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKL-SADSDQNVR 142 (675)
T ss_pred HHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHH-hcCCccccc
Confidence 34566555442 233337888999999999999999999999999999988766552 24455667775 589999998
Q ss_pred HHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHH-HhccCChhHHHHHHHHHHhhCCCChhHHH----HHHHHHH
Q 004394 193 ANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEIF----DIMNLLE 267 (756)
Q Consensus 193 ~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~-~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~----~il~~l~ 267 (756)
..| .++..+.+.-... ...-++-+.+..|++ ++...+|...+.+++-+..+-...+-+.. .+++-+.
T Consensus 143 ~~a-eLLdRLikdIVte-------~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf 214 (675)
T KOG0212|consen 143 GGA-ELLDRLIKDIVTE-------SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLF 214 (675)
T ss_pred cHH-HHHHHHHHHhccc-------cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHH
Confidence 776 3444433321110 000122233445554 67788999999999988876544444443 3445555
Q ss_pred HHhcccchHHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccc--
Q 004394 268 DRLQHANGAVVLSTIKVFLHLT---LSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-- 342 (756)
Q Consensus 268 ~~L~~~n~aVvleaik~ii~l~---~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-- 342 (756)
..|..++..|.--|=.++..+- .+.++.- -++++++.++.-+.++++++|-.+|..|..+++..|..+-.++.
T Consensus 215 ~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~--d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~i 292 (675)
T KOG0212|consen 215 NMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM--DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGI 292 (675)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc--CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhh
Confidence 6677778777644444332221 1222210 12456777888888999999999999999999999876555542
Q ss_pred ---eeeecCCCCH-HHHHHHHH---HHHHhcCCCC------HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh--
Q 004394 343 ---HFYCQYNEPS-YVKKLKLE---MLTAVANESN------TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-- 407 (756)
Q Consensus 343 ---~f~c~~~dp~-~IK~~kLd---IL~~L~n~~N------v~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-- 407 (756)
.+-|..+++. +||..+-. .|.+++.+.- ++.|++-|..|+.+...+-+-.+..-|..+-.|+|..
T Consensus 293 l~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~ 372 (675)
T KOG0212|consen 293 LTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLL 372 (675)
T ss_pred hhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhh
Confidence 3347776665 56655543 3566665543 3489999999999988999999999999999898842
Q ss_pred ---hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhh
Q 004394 408 ---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (756)
Q Consensus 408 ---~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~ 439 (756)
..+..++++-|+...+.|+.-+..++..|...
T Consensus 373 ~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 373 VHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSS 407 (675)
T ss_pred hhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcC
Confidence 45788899988888888888888888877753
No 24
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.6e-05 Score=90.05 Aligned_cols=291 Identities=16% Similarity=0.162 Sum_probs=206.8
Q ss_pred ccCChHHHHHHHHHHHHcCC-CChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhhcCC-
Q 004394 92 KVNPDLALLTINFLQRDCKD-EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAP- 168 (756)
Q Consensus 92 ~~~~el~lL~iNtl~KDL~s-~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~~~p~- 168 (756)
..+++..+-++..|+|-+.. .||-+. .++.+ | +++.+..+| .+.+|-+|--||-|+..+-....+
T Consensus 77 S~~~~~q~~a~~~~rkllS~~~~ppi~-~vi~~-G----------~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~ 144 (514)
T KOG0166|consen 77 SDDPQQQLTATQAFRKLLSKERNPPID-EVIQS-G----------VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ 144 (514)
T ss_pred CCCHHHHHHHHHHHHHHHccCCCCCHH-HHHHc-C----------cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh
Confidence 34566667788888888764 454443 23333 2 344455555 477899999999999999985544
Q ss_pred --cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCCh-hHHHHHH
Q 004394 169 --TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSE-WAQCLVL 245 (756)
Q Consensus 169 --~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~-W~Qi~IL 245 (756)
.+.+.+.++.+..+ +..++..|.--|+-+|..|+.+.+. |++. .++...+..|+..+...++ =..-.+.
T Consensus 145 T~~vv~agavp~fi~L-l~s~~~~v~eQavWALgNIagds~~-----~Rd~--vl~~g~l~pLl~~l~~~~~~~~lRn~t 216 (514)
T KOG0166|consen 145 TKVVVDAGAVPIFIQL-LSSPSADVREQAVWALGNIAGDSPD-----CRDY--VLSCGALDPLLRLLNKSDKLSMLRNAT 216 (514)
T ss_pred ccccccCCchHHHHHH-hcCCcHHHHHHHHHHHhccccCChH-----HHHH--HHhhcchHHHHHHhccccchHHHHHHH
Confidence 45678889999997 7999999999999999999876653 5443 3555577888888877766 1223344
Q ss_pred HHHHhhCCCC----h-hHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchH
Q 004394 246 ELVAKYVPLD----S-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQS 319 (756)
Q Consensus 246 ~lL~~y~p~d----~-~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nir 319 (756)
.+|..++... + +....+++.+..+++|.+.-|+-.|..++-++.....+..+.+++ .+.+-|+.+|...+++++
T Consensus 217 W~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~ 296 (514)
T KOG0166|consen 217 WTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVV 296 (514)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccc
Confidence 5666665432 2 566789999999999999999999999999998654443344443 445568889998899999
Q ss_pred HHHHHHHHHHHhhCCc----cccc-ccceee-ecC-CCCHHHHHHHHHHHHHhcCCCCHHH--------HHHHHHHHhhh
Q 004394 320 YAVLSHLHILVMRAPF----IFAS-DYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTYE--------IVTELCEYAAN 384 (756)
Q Consensus 320 YvaL~~l~~L~~~~p~----lf~~-~~~~f~-c~~-~dp~~IK~~kLdIL~~L~n~~Nv~~--------Iv~EL~~Yl~~ 384 (756)
--+|+.+.-|+.-.-. ++.. -+.+|- +.. +....||..+.-++..++. .|.++ ++..|.+-+..
T Consensus 297 ~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-G~~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 297 TPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-GNQEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred cHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-CCHHHHHHHHHcccHHHHHHHHhc
Confidence 9999998776543211 1111 111221 233 4445699999999999876 66543 47788888888
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 004394 385 VDIPIARESIRAVGKIALQ 403 (756)
Q Consensus 385 ~D~~~~~~~I~aIg~lA~k 403 (756)
.|...++|+.-+|+.++..
T Consensus 376 ~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 376 AEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred cchHHHHHHHHHHHhhccc
Confidence 9999999999999988765
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=0.00016 Score=87.34 Aligned_cols=426 Identities=15% Similarity=0.166 Sum_probs=261.6
Q ss_pred HHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhh-cCCccc--CCCchHHH
Q 004394 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTL 179 (756)
Q Consensus 104 tl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~~-~p~~~~--~~~~i~~L 179 (756)
.|..-+.+++-.+|.-|=+++.++-.++= +.+.+...+ ...+|-||.-|+.=+-|+... ++..-. ...+...|
T Consensus 8 qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~l 84 (1075)
T KOG2171|consen 8 QLLQQLLSPDNEVRRQAEEALETLAKTEP---LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSL 84 (1075)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHhhcccc---hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 34455667777778888888886533321 444455544 346899999999888887754 332210 01122223
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC---CC-C
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV---PL-D 255 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~---p~-d 255 (756)
...+.+++-+.|.-.-.-++.||.+..-. +.| +..+.-|....+..++=.+-..+.+|..+. .. .
T Consensus 85 L~~~~~E~~~~vr~k~~dviAeia~~~l~-------e~W----Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~ 153 (1075)
T KOG2171|consen 85 LEIIQSETEPSVRHKLADVIAEIARNDLP-------EKW----PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL 153 (1075)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhccc-------cch----HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc
Confidence 33335788899988888888888875432 122 234556677788888888877777777653 21 2
Q ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc---chhH---HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 004394 256 SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM---TDVH---QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (756)
Q Consensus 256 ~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~---~~~~---~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L 329 (756)
.....++...+...+...++.|...|++++..+.... ++.. ..++-++...+..++..++...---+|..+..+
T Consensus 154 ~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred chhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 2233456677777777777669999999887664332 2211 223344455566677766666678899999999
Q ss_pred HhhCCccccccccee--ee-----cCCCCHHHHHHHHHHHHHhcCC------CC---HHHHHHHHHHHhhhCCH------
Q 004394 330 VMRAPFIFASDYKHF--YC-----QYNEPSYVKKLKLEMLTAVANE------SN---TYEIVTELCEYAANVDI------ 387 (756)
Q Consensus 330 ~~~~p~lf~~~~~~f--~c-----~~~dp~~IK~~kLdIL~~L~n~------~N---v~~Iv~EL~~Yl~~~D~------ 387 (756)
+...|.++.+|+..+ || ..+=+..+|..+|++|..++.- .+ ...++.-++.-+++.+.
T Consensus 234 ~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~ 313 (1075)
T KOG2171|consen 234 LESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSN 313 (1075)
T ss_pred HhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcc
Confidence 999999999988633 23 2344578999999999987532 11 22344444444443211
Q ss_pred ----------HHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch----HHHHH
Q 004394 388 ----------PIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH----DCIAV 450 (756)
Q Consensus 388 ----------~~~~~~I~aIg~lA~k~~~~---~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~----~~~~~ 450 (756)
.-.+-+.++|-++|.+.+.. .-.+..+-.++....-+-...++..+--+....++.-. .++.+
T Consensus 314 ~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 314 EDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPI 393 (1075)
T ss_pred ccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 13556888999999988632 23455555666655444444444455544444333211 12222
Q ss_pred HHHhhhccCCchhHHHHHHhHhccCCCCCCC------hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChh-hHHH
Q 004394 451 VGSISSQNVQEPKAKAALIWMLGEYSQDMQD------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE-TQKV 523 (756)
Q Consensus 451 l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~------~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e-~~~~ 523 (756)
+.+.+ .-.+|+++.|++-.+|+++..+.. ...++..++....+...+.|+...-.|+.-++-.++.+ .++.
T Consensus 394 Vl~~l--~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 394 VLNGL--NDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHhhc--CCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 22222 124688999999999999877642 12223334444434333789999999999888777642 3333
Q ss_pred HH----HHHHhhhcCCChHHHhHHHH
Q 004394 524 LG----AALAAGLADFHQDVHDRALF 545 (756)
Q Consensus 524 l~----~vL~~~~~d~d~dVrdRA~~ 545 (756)
+. +.|.....+..+.||.-+.-
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 33 34445566778888887763
No 26
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00096 Score=77.77 Aligned_cols=405 Identities=13% Similarity=0.167 Sum_probs=229.6
Q ss_pred cCCCChHHHHHHHHHHhc-CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCC
Q 004394 109 CKDEDPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (756)
Q Consensus 109 L~s~Np~iR~LALrtLs~-I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~ 187 (756)
|.+++.-...-|++.+-. |...+=+..++|.|.|....+++-|||-..+-+++.-...|+...- -+..+++. |.|+
T Consensus 44 LdSnkd~~KleAmKRIia~iA~G~dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQk~-L~Dp 120 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAKGKDVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQKA-LKDP 120 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHHhh-hcCC
Confidence 445555555666544433 3333337788999999999999999999999999999999987632 36788888 6999
Q ss_pred ChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 004394 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLE 267 (756)
Q Consensus 188 d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~ 267 (756)
|+.+.+.|+.+|..|.-. .|.+-++-.+=+...+++|+..-..-..+.++..-++++...+.+.+.
T Consensus 121 N~LiRasALRvlSsIRvp--------------~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL~e~I~ 186 (968)
T KOG1060|consen 121 NQLIRASALRVLSSIRVP--------------MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQLEEVIK 186 (968)
T ss_pred cHHHHHHHHHHHHhcchh--------------hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHHHHHHH
Confidence 999999999999998431 111111222233467789998777777777766667777778999999
Q ss_pred HHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh---CCccccccc--c
Q 004394 268 DRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR---APFIFASDY--K 342 (756)
Q Consensus 268 ~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~---~p~lf~~~~--~ 342 (756)
.+|....+-|+=+|+-+|-.+.+..-++...-++|+. ++|-.-+.=-|-+.+..|.+-+.. .|....... .
T Consensus 187 ~LLaD~splVvgsAv~AF~evCPerldLIHknyrklC----~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n 262 (968)
T KOG1060|consen 187 KLLADRSPLVVGSAVMAFEEVCPERLDLIHKNYRKLC----RLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDN 262 (968)
T ss_pred HHhcCCCCcchhHHHHHHHHhchhHHHHhhHHHHHHH----hhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence 9999999999999998888777654343222344543 444332222366666666666543 232211111 1
Q ss_pred eeeecCCCC-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhc
Q 004394 343 HFYCQYNEP-SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME 421 (756)
Q Consensus 343 ~f~c~~~dp-~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~ 421 (756)
-+-|..-+. .+||.= .++..-++.+++-..-.+.+.+....-.+.+..-.+|-+. +...++.-|+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~P-------~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~-~~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 263 GRSCNLKDKYNEIRTP-------YVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN-QVTKIAKALVRLLRSN 334 (968)
T ss_pred cccccccccccccCCC-------cccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH-HHHHHHHHHHHHHhcC
Confidence 122211000 011111 2223333333333333333334333333333333333221 2234556666665543
Q ss_pred C--chhhHHHHHHHHHHHhhCCCcchH------------------HHHHHHHhh------------hccCCch--hHHHH
Q 004394 422 K--DYVTAEALVLVKDLLRKYPQWSHD------------------CIAVVGSIS------------SQNVQEP--KAKAA 467 (756)
Q Consensus 422 ~--~~v~~E~i~~i~~Il~~~p~~~~~------------------~~~~l~~l~------------~~~i~~p--~ak~a 467 (756)
. .|++=.. |..+..+.|.+++. -+.+|.+|. ..++..+ +.-++
T Consensus 335 ~~vqyvvL~n---Ia~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~ 411 (968)
T KOG1060|consen 335 REVQYVVLQN---IATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAA 411 (968)
T ss_pred CcchhhhHHH---HHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHH
Confidence 2 2332222 22222222322210 011222221 1122222 35566
Q ss_pred HHhHhccCCCCCCC-hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhHHHHH
Q 004394 468 LIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRALFY 546 (756)
Q Consensus 468 ~iWiLGEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y 546 (756)
.+--||.++..+.. ++..+.-++......+ ..|-.+....+=+|.-+.|.+-.+++.++.+.. |.-.-=+-||...
T Consensus 412 aV~AiGrCA~~~~sv~~tCL~gLv~Llsshd-e~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~ll--dti~vp~ARA~Ii 488 (968)
T KOG1060|consen 412 AVKAIGRCASRIGSVTDTCLNGLVQLLSSHD-ELVVAEAVVVIKRLLQKDPAEHLEILFQLARLL--DTILVPAARAGII 488 (968)
T ss_pred HHHHHHHHHHhhCchhhHHHHHHHHHHhccc-chhHHHHHHHHHHHHhhChHHHHHHHHHHHHHh--hhhhhhhhhceee
Confidence 67778888887655 5667887777776666 667777777777777677765444555554443 3333336677777
Q ss_pred HH
Q 004394 547 HR 548 (756)
Q Consensus 547 ~r 548 (756)
|-
T Consensus 489 WL 490 (968)
T KOG1060|consen 489 WL 490 (968)
T ss_pred ee
Confidence 64
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.008 Score=73.24 Aligned_cols=527 Identities=11% Similarity=0.089 Sum_probs=261.7
Q ss_pred hHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccc-----cCChHHHHHHHHHHHHc-CCCCh
Q 004394 41 DDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAK-----VNPDLALLTINFLQRDC-KDEDP 114 (756)
Q Consensus 41 ~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~-----~~~el~lL~iNtl~KDL-~s~Np 114 (756)
.+.|++| .|.+-..-.-..+..++.++... ++|-+.|.++-..+..+.. -+.|.---+-..+..-. ..+-+
T Consensus 18 n~vr~~A-e~~l~~~~~~~~~l~~L~~i~~~--~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~ 94 (1075)
T KOG2171|consen 18 NEVRRQA-EEALETLAKTEPLLPALAHILAT--SADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEP 94 (1075)
T ss_pred chHHHHH-HHHHHHhhcccchHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccch
Confidence 3456666 34443333333455555555444 3454555554444333221 12222111112222222 33456
Q ss_pred HHHHHHHHHHh---cCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCC----CchHHHHHhHhcCC
Q 004394 115 MIRGLALRSLC---SLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDA----DFPPTLKHLMLNDP 187 (756)
Q Consensus 115 ~iR~LALrtLs---~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~----~~i~~L~~lLL~D~ 187 (756)
.||----++++ +--.++=++.+.+.+..+.++++|-.|-.|..-+..+-...++.. . ++...+.+. +.|+
T Consensus 95 ~vr~k~~dviAeia~~~l~e~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~--~~~~~~l~~lf~q~-~~d~ 171 (1075)
T KOG2171|consen 95 SVRHKLADVIAEIARNDLPEKWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTL--QPHLDDLLRLFSQT-MTDP 171 (1075)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcccc--chhHHHHHHHHHHh-ccCC
Confidence 66644344444 444455677888899999999999999999988887777666654 3 334444455 3677
Q ss_pred ChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccC----ChhHHHHHHHHHHhhCCCChhHHHHHH
Q 004394 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF----SEWAQCLVLELVAKYVPLDSNEIFDIM 263 (756)
Q Consensus 188 d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~----~~W~Qi~IL~lL~~y~p~d~~e~~~il 263 (756)
+..|...|+.++..+....+. +.+..+. + ...+.++++.+.+. +.=.-..+|+.|..+.-..+.-....+
T Consensus 172 s~~vr~~a~rA~~a~~~~~~~-~~~~~~~----~-~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l 245 (1075)
T KOG2171|consen 172 SSPVRVAAVRALGAFAEYLEN-NKSEVDK----F-RDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL 245 (1075)
T ss_pred cchHHHHHHHHHHHHHHHhcc-chHHHHH----H-HHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 766999999999888764431 1111110 0 11233344433222 222234455555444433333222222
Q ss_pred ----HHHHHHhcc--cchHHHHHHHHHHHhhccccchh---HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC
Q 004394 264 ----NLLEDRLQH--ANGAVVLSTIKVFLHLTLSMTDV---HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (756)
Q Consensus 264 ----~~l~~~L~~--~n~aVvleaik~ii~l~~~~~~~---~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p 334 (756)
......-.+ -++++.--|+.+++.+..+-+.. ......++...+...+.. +. ..+
T Consensus 246 ~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte---------------~~-~D~ 309 (1075)
T KOG2171|consen 246 SQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTE---------------EE-DDD 309 (1075)
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCC---------------cc-cch
Confidence 222222222 24555555555555443221110 000001111111111110 00 001
Q ss_pred cccccccceeeecCCCCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-----h
Q 004394 335 FIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN-ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----N 408 (756)
Q Consensus 335 ~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n-~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-----~ 408 (756)
+-...+...-.+ +++|..+....||.|..=-. +.=+-.+++-+..++++.+-..|..+..+|+.+++--++. .
T Consensus 310 ew~~~d~~ded~-~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~ 388 (1075)
T KOG2171|consen 310 EWSNEDDLDEDD-EETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP 388 (1075)
T ss_pred hhcccccccccc-ccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 111111111122 45567777788887665333 3344556666778888999999999999999999864432 3
Q ss_pred HHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcchHHHHHHH-Hhh--hccCCchhHHH-HHHhHhc--cCCCCCCC
Q 004394 409 AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIAVVG-SIS--SQNVQEPKAKA-ALIWMLG--EYSQDMQD 481 (756)
Q Consensus 409 ~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~-p~~~~~~~~~l~-~l~--~~~i~~p~ak~-a~iWiLG--Ey~~~i~~ 481 (756)
.+++..+..|.....-|...+...+-++-... |+++.+.-..+. .++ .++-..+++.+ +++-+++ |++..-.-
T Consensus 389 ~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l 468 (1075)
T KOG2171|consen 389 KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSIL 468 (1075)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHH
Confidence 46666666777666677777777776665432 344333222221 222 14555666643 3333332 33321111
Q ss_pred h---HHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh-------hhHHHHHHHHHhhhcCCChHHHhHHHHHHHHhc
Q 004394 482 A---PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-------ETQKVLGAALAAGLADFHQDVHDRALFYHRLLQ 551 (756)
Q Consensus 482 ~---~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~-------e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~ 551 (756)
. +.+++.........+++.||.+.+||++-+..-... ..=+.+.++|+.+..+..-++|-...+...++.
T Consensus 469 ~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 469 EPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 1 233443333333334489999999999877543321 122334445555444456777777777777765
Q ss_pred CC------HHHHHhhcCCCCCCCcccccCCChHHHHHHHhhcCcchhhccCC
Q 004394 552 YN------VSVAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKP 597 (756)
Q Consensus 552 ~~------~e~a~~vv~~~~p~i~~~~~~~~~~~~~~l~~~~~tls~vy~kp 597 (756)
.- .+.++.++.-..-.-....+ .+.....-++.-.+-+..||++-
T Consensus 549 ~AVGke~F~~~a~eliqll~~~~~~~~~-~dd~~~sy~~~~warmc~ilg~~ 599 (1075)
T KOG2171|consen 549 RAVGKEKFLPLAEELIQLLLELQGSDQD-DDDPLRSYMIAFWARMCRILGDD 599 (1075)
T ss_pred HHhhhhhhhHhHHHHHHHHHhhcccchh-hccccHHHHHHHHHHHHHHhchh
Confidence 42 12344443211100000111 23345566677777788888863
No 28
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00021 Score=81.66 Aligned_cols=353 Identities=17% Similarity=0.200 Sum_probs=210.8
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
.++...++-..+.+++.|.+|.||-+.-+-+--++...--. .-++..+.|..+ |+.+|....-.|+.+|..|++..++
T Consensus 84 ~~~~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~-~wpelLp~L~~~-L~s~d~n~~EgA~~AL~KIcEDsa~ 161 (885)
T KOG2023|consen 84 PSEVLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQ-HWPELLPQLCEL-LDSPDYNTCEGAFGALQKICEDSAQ 161 (885)
T ss_pred ChHHHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccc-cchhHHHHHHHH-hcCCcccccchhHHHHHHHHhhhHH
Confidence 34677888888889999999999988766666555432211 124456778786 6788878888899999999875542
Q ss_pred chhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Q 004394 209 TSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (756)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l 288 (756)
. ++. +|. .+-..-++..+....+|.++.+.-.|+.|+=++
T Consensus 162 ~-----------lds--------------~~~---------------~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 162 F-----------LDS--------------DVL---------------TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred H-----------Hhh--------------hcc---------------cCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 1 110 111 011223566667777888877766666665444
Q ss_pred ccccch-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccccee--e---ecCCCCHHHHHHHHHHH
Q 004394 289 TLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF--Y---CQYNEPSYVKKLKLEML 362 (756)
Q Consensus 289 ~~~~~~-~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f--~---c~~~dp~~IK~~kLdIL 362 (756)
-...+. +.. -+++....|-.+-++.+||+|--+-+.+..++..+|+-+.+|+..+ | .-.+.+..|..++-|..
T Consensus 202 i~~~~qal~~-~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFw 280 (885)
T KOG2023|consen 202 IIIQTQALYV-HIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFW 280 (885)
T ss_pred eecCcHHHHH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHH
Confidence 332221 111 1233444455566789999999999999999999999888888632 2 22466678999999999
Q ss_pred HHhcCCCCHHHHHHHHHH-----------Hh-------h---------hCCHH---------------------------
Q 004394 363 TAVANESNTYEIVTELCE-----------YA-------A---------NVDIP--------------------------- 388 (756)
Q Consensus 363 ~~L~n~~Nv~~Iv~EL~~-----------Yl-------~---------~~D~~--------------------------- 388 (756)
.++|...=..+++..-+. |. . +.+.+
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~ 360 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDED 360 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccc
Confidence 999988755555433221 11 0 00011
Q ss_pred ----------HHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhc---CchhhHHHHH-HHHHHHhh-----CCCcchHHHH
Q 004394 389 ----------IARESIRAVGKIALQQYDVNAIVDRLLQFLEME---KDYVTAEALV-LVKDLLRK-----YPQWSHDCIA 449 (756)
Q Consensus 389 ----------~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~---~~~v~~E~i~-~i~~Il~~-----~p~~~~~~~~ 449 (756)
+|+-+..++..+|.-|++ .++++++-+|+.. .+-+..|+-+ ++--|... +|.+-+ .+.
T Consensus 361 DDdD~~~dWNLRkCSAAaLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe-Lip 437 (885)
T KOG2023|consen 361 DDDDAFSDWNLRKCSAAALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE-LIP 437 (885)
T ss_pred ccccccccccHhhccHHHHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH-HHH
Confidence 233344455555544432 3455556555532 1223333322 33333322 222211 122
Q ss_pred HHHHhhhccCCchhHHHHHHhHhccCCCCCCC-h-----HHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHH
Q 004394 450 VVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-A-----PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKV 523 (756)
Q Consensus 450 ~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~-~-----~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~ 523 (756)
.+-.++ +-.-|-++...+|-+|.|+..+-. . ..+++.++++..+.. ..||-+.-+|++-+=-..-++.-+.
T Consensus 438 ~l~~~L--~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~N-K~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 438 FLLSLL--DDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSN-KKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred HHHHHh--ccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhccchhHHH
Confidence 222222 113356677789999999987632 2 235666777777777 8999998888887654444444455
Q ss_pred HHHHHHh
Q 004394 524 LGAALAA 530 (756)
Q Consensus 524 l~~vL~~ 530 (756)
++++|+.
T Consensus 515 l~~IL~~ 521 (885)
T KOG2023|consen 515 LEYILDQ 521 (885)
T ss_pred HHHHHHH
Confidence 5555553
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.17 E-value=9.8e-06 Score=70.55 Aligned_cols=86 Identities=29% Similarity=0.302 Sum_probs=69.1
Q ss_pred HHHHHHHc-CCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 102 INFLQRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 102 iNtl~KDL-~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
+..|.+-+ +|+|+.+|..|+++++.++.++. .+.+.++++|++|.||..|+.++.++-. ++.++.|.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~~L~ 68 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEA----IPALIELLKDEDPMVRRAAARALGRIGD--------PEAIPALI 68 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHH----HHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhH----HHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHH
Confidence 35677788 89999999999999999998865 4556677799999999999999998842 34577888
Q ss_pred HhHhcCCChhHHHHHHHHH
Q 004394 181 HLMLNDPDPQVVANCLSAL 199 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL 199 (756)
+++.+|.+..|..+|+.+|
T Consensus 69 ~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhc
Confidence 8755567777888888776
No 30
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0018 Score=74.36 Aligned_cols=450 Identities=16% Similarity=0.152 Sum_probs=253.2
Q ss_pred HHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHhcCCChhHHHHH
Q 004394 118 GLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANC 195 (756)
Q Consensus 118 ~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~A 195 (756)
|.||-.|+++-..++.+.+.|.++..|.+....||-.+++|+.-+-.-+-+-+. -+++++.+.++ |+|+-|.|+.-+
T Consensus 376 AAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~-L~DKkplVRsIT 454 (885)
T KOG2023|consen 376 AAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSL-LDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHH-hccCccceeeee
Confidence 578999999999999999999999999999999999999999887764322221 14578888887 699999998766
Q ss_pred HHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHH-------
Q 004394 196 LSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED------- 268 (756)
Q Consensus 196 l~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~------- 268 (756)
+=.|......-.+ ..+.. .-++.+..|++++-+.+-|.|-.....++.+.-+-.++.--.++.+..
T Consensus 455 CWTLsRys~wv~~------~~~~~-~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~ 527 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQ------DSRDE-YFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFG 527 (885)
T ss_pred eeeHhhhhhhHhc------CChHh-hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 6566554321100 00101 114577888889999999999999988888743322222222332222
Q ss_pred HhcccchHHHHHHHHHHHhhccccchh-HHHHHHHHHHHHHH---hhcCCCcchHHHHHHHHHHHHhhCCcccccccc--
Q 004394 269 RLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLT---LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-- 342 (756)
Q Consensus 269 ~L~~~n~aVvleaik~ii~l~~~~~~~-~~~~l~rl~~~L~~---LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-- 342 (756)
.-|+.|--++|.||.++-.--.. ++ +...++.+.+||+. +|+.+|.++ |--|+.+..++..-..-|.++..
T Consensus 528 kYQ~KNLlILYDAIgtlAdsvg~--~Ln~~~YiqiLmPPLi~KW~~lsd~DKdL-fPLLEClSsia~AL~~gF~P~~~~V 604 (885)
T KOG2023|consen 528 KYQKKNLLILYDAIGTLADSVGH--ALNKPAYIQILMPPLIEKWELLSDSDKDL-FPLLECLSSIASALGVGFLPYAQPV 604 (885)
T ss_pred HHhhcceehHHHHHHHHHHHHHH--hcCcHHHHHHhccHHHHHHHhcCcccchH-HHHHHHHHHHHHHHhccccccCHHH
Confidence 22678999999999987532110 01 12334556777764 677666664 55666666665532211211110
Q ss_pred -------------eeeecCCCCHH------HHHHHHHHHHHhcCC--CCHHH------HHHHHHHHhhhCCHHHHHHHHH
Q 004394 343 -------------HFYCQYNEPSY------VKKLKLEMLTAVANE--SNTYE------IVTELCEYAANVDIPIARESIR 395 (756)
Q Consensus 343 -------------~f~c~~~dp~~------IK~~kLdIL~~L~n~--~Nv~~------Iv~EL~~Yl~~~D~~~~~~~I~ 395 (756)
..-+..+||.+ .-..+||++..|+.. +.++. |++=|+..+.+.-+++|+-+-.
T Consensus 605 y~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FA 684 (885)
T KOG2023|consen 605 YQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFA 684 (885)
T ss_pred HHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHH
Confidence 00111222222 224568888776421 12222 4444577888888999998888
Q ss_pred HHHHHHhhcC-ChhHHHHHHHHHhhhcC--c--hhhHHHHHHHHHHHhh-CCCcchHHHHHHHHhh---hccCCchhHHH
Q 004394 396 AVGKIALQQY-DVNAIVDRLLQFLEMEK--D--YVTAEALVLVKDLLRK-YPQWSHDCIAVVGSIS---SQNVQEPKAKA 466 (756)
Q Consensus 396 aIg~lA~k~~-~~~~~vd~Ll~LL~~~~--~--~v~~E~i~~i~~Il~~-~p~~~~~~~~~l~~l~---~~~i~~p~ak~ 466 (756)
-+|.++.-.+ .+..|++-++.++...- + .+.+-++-.+-.|..+ -++.+.++-.++.++. ...........
T Consensus 685 LLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~~~~v~~vl~~L~~iin~~~~~~tllE 764 (885)
T KOG2023|consen 685 LLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKMKQYVSPVLEDLITIINRQNTPKTLLE 764 (885)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHhcccCchHHHHH
Confidence 8999886643 33455666666655421 1 2333333333333222 1222222223333332 11112222233
Q ss_pred HHHhHhccCCCCCCC--hHHHHHHHhhhhc----cCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHH
Q 004394 467 ALIWMLGEYSQDMQD--APYILESLTENWE----EEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVH 540 (756)
Q Consensus 467 a~iWiLGEy~~~i~~--~~~iL~~l~~~f~----~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVr 540 (756)
-.+--||--|...++ +| .++.|.+.|- .-.+.+-|-..-.-+.++..-+|...-..+..+.+....=.|++ -
T Consensus 765 NtAITIGrLg~~~Pe~vAp-~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~vv~~~~f~c~aiAsw~np~-~ 842 (885)
T KOG2023|consen 765 NTAITIGRLGYICPEEVAP-HLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSGVVSSFIFICDAIASWSNPE-D 842 (885)
T ss_pred hhhhhhhhhhccCHHhcch-hHHHHHHHHHHHhcccccchhHHHHHHHHHHheeeCchhhhhhhHHHHHHHhcccChH-H
Confidence 333445555544332 22 3444443332 21124556667777777777788655444433333322224555 4
Q ss_pred hHHHHHHHHhcCCHHHHHhhcCCCCCCCcccccCCChHHHHHHHhh
Q 004394 541 DRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIFDE 586 (756)
Q Consensus 541 dRA~~Y~rLL~~~~e~a~~vv~~~~p~i~~~~~~~~~~~~~~l~~~ 586 (756)
+-..+++++|.... ..+. +-.+..|.+.++|.++++|-..
T Consensus 843 ~l~~~f~kiL~g~k----~qvg--~~nW~~~~~qf~P~~~erl~a~ 882 (885)
T KOG2023|consen 843 DLRDEFYKILQGFK----NQVG--KINWQRFSEQFPPPLKERLQAF 882 (885)
T ss_pred HHHHHHHHHHHHHH----HHhh--hhhHHHHhhcCChhHHHHHHHH
Confidence 44556677665332 2221 1123347788888888887543
No 31
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0034 Score=72.75 Aligned_cols=322 Identities=16% Similarity=0.127 Sum_probs=202.7
Q ss_pred CCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC--ChhhhHHHHHHHHHhhcCCCChHH
Q 004394 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYV 151 (756)
Q Consensus 74 s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I--~~~ei~e~l~~~v~~~L~d~~pyV 151 (756)
|++.-.=-++.=.++.+ ..||++.=..|-+..=|++.-|++|--|+-.|-.+ .-||-+...+|-++.-|.|++|-|
T Consensus 120 S~n~ye~giAL~GLS~f--vTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V 197 (877)
T KOG1059|consen 120 SSNVYEVGLALSGLSCI--VTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSV 197 (877)
T ss_pred cCccchhhheecccccc--cCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchH
Confidence 33333333333344444 35788887778788888999999999999988875 568999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHH
Q 004394 152 RTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN 231 (756)
Q Consensus 152 RKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~ 231 (756)
-.+|+-.+.-+-+++|.-+ -.+.+.+.++|...+|-=|+.-.+.++..+...+|....+ .+..|++
T Consensus 198 ~SAAV~VICELArKnPkny--L~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK------------Lieplt~ 263 (877)
T KOG1059|consen 198 VSAAVSVICELARKNPQNY--LQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK------------LIEPITE 263 (877)
T ss_pred HHHHHHHHHHHHhhCCccc--ccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh------------hhhHHHH
Confidence 9999999999999999988 4578888888766666667777788888877766653322 2222222
Q ss_pred HhccCChhHHHHHHHHHHhh--------CCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHH
Q 004394 232 RIKEFSEWAQCLVLELVAKY--------VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERI 303 (756)
Q Consensus 232 ~l~~~~~W~Qi~IL~lL~~y--------~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl 303 (756)
.+.... .--.+-+++... .|++...+.-.++.+..++..+....-|=+..++..+.+.++.. +..-
T Consensus 264 li~sT~--AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~----Vqa~ 337 (877)
T KOG1059|consen 264 LMESTV--AMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA----VQAH 337 (877)
T ss_pred HHHhhH--HHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH----HHHh
Confidence 221110 000111111111 12222223333444445555555555555555555554433321 1223
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHHhhCC--cccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHH-----
Q 004394 304 KAPLLTLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVT----- 376 (756)
Q Consensus 304 ~~~L~~LLss~~~nirYvaL~~l~~L~~~~p--~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~----- 376 (756)
...+++.|++.|++||.-||+.+.-|+.+.- .+++.=+.++. ..++...|.+-+--+..+|..+|..-|.+
T Consensus 338 kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~--~ae~t~yrdell~~II~iCS~snY~~ItdFEWYl 415 (877)
T KOG1059|consen 338 KDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKHVE--KAEGTNYRDELLTRIISICSQSNYQYITDFEWYL 415 (877)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Confidence 4456788999999999999999999887643 23333222222 34556788888888888999999877654
Q ss_pred -HHHHHhhhCCHHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHhh
Q 004394 377 -ELCEYAANVDIPIARESIRAVGKIALQQYDVN-AIVDRLLQFLE 419 (756)
Q Consensus 377 -EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~-~~vd~Ll~LL~ 419 (756)
-|.+-++-.-.+--+.+..-|-.++.+.++.. .-|+.+..|+.
T Consensus 416 sVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 416 SVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLD 460 (877)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHh
Confidence 11122211122333455566667777877653 35677777766
No 32
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.00 E-value=0.0086 Score=69.60 Aligned_cols=418 Identities=18% Similarity=0.150 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHH--hcCCCccchhhhhh---------hhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcC
Q 004394 42 DSKRELFKKVISYM--TIGIDVSAVFGEMV---------MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK 110 (756)
Q Consensus 42 ~~kk~~lkKlI~~~--~lG~Dvs~lF~~Vi---------~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~ 110 (756)
+..|+.+.|++-.. +-|.+-.++.++++ .-|+.+.-..|.++|+......+.-.+- .|+.+..|+.
T Consensus 650 eemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~---~v~R~v~~lk 726 (1172)
T KOG0213|consen 650 EEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDP---IVSRVVLDLK 726 (1172)
T ss_pred HHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchH---HHHHHhhhhc
Confidence 34555555666543 46776666555543 3455666677999999999888766654 5688889999
Q ss_pred CCChHHHHHHHH----HHhcCChhh----hHHHHHHH----------------------------------------HHh
Q 004394 111 DEDPMIRGLALR----SLCSLRVAN----LVEYLVGP----------------------------------------LGL 142 (756)
Q Consensus 111 s~Np~iR~LALr----tLs~I~~~e----i~e~l~~~----------------------------------------v~~ 142 (756)
|.+|..|-++.. .+++++..+ +.+.++.. +..
T Consensus 727 de~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~ 806 (1172)
T KOG0213|consen 727 DEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILW 806 (1172)
T ss_pred cccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHH
Confidence 999977765554 445544322 23333333 334
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhcCCcccCCCch----HHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP----PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i----~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~ 218 (756)
.|++++|.||..|+--+.++-..-... .++... -.|++- +.+.+|.|+.+.+.++..|...-+
T Consensus 807 rLnnksa~vRqqaadlis~la~Vlktc-~ee~~m~~lGvvLyEy-lgeeypEvLgsILgAikaI~nvig----------- 873 (1172)
T KOG0213|consen 807 RLNNKSAKVRQQAADLISSLAKVLKTC-GEEKLMGHLGVVLYEY-LGEEYPEVLGSILGAIKAIVNVIG----------- 873 (1172)
T ss_pred HhcCCChhHHHHHHHHHHHHHHHHHhc-cHHHHHHHhhHHHHHh-cCcccHHHHHHHHHHHHHHHHhcc-----------
Confidence 444444444444444333332211110 001111 122222 233444444444444444321000
Q ss_pred hhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccch-hHH
Q 004394 219 ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQ 297 (756)
Q Consensus 219 ~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~-~~~ 297 (756)
+-... .-+.+++..+.+.|++.-.-|+-.||.++..+....++ +..
T Consensus 874 ----------------------------m~km~-----pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~a 920 (1172)
T KOG0213|consen 874 ----------------------------MTKMT-----PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSA 920 (1172)
T ss_pred ----------------------------ccccC-----CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCH
Confidence 00001 12467899999999998888999999887766543332 111
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004394 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTE 377 (756)
Q Consensus 298 ~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~E 377 (756)
.-.-|+.--|+-+|.+-.-++|-.+...+-.|... --=.+|+.-
T Consensus 921 REWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka------------------------------------IGPqdVLat 964 (1172)
T KOG0213|consen 921 REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA------------------------------------IGPQDVLAT 964 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh------------------------------------cCHHHHHHH
Confidence 11123333344455444455666665555544432 222344444
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhc
Q 004394 378 LCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ 457 (756)
Q Consensus 378 L~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~ 457 (756)
|+.-+..-+..-+.-...+|+..|+.....+ .+.+|+.=-....-.|-+-++..+.-+++..-+...+.+..+.-++++
T Consensus 965 LlnnLkvqeRq~RvcTtvaIaIVaE~c~pFt-VLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~PlleD 1043 (1172)
T KOG0213|consen 965 LLNNLKVQERQNRVCTTVAIAIVAETCGPFT-VLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLED 1043 (1172)
T ss_pred HHhcchHHHHHhchhhhhhhhhhhhhcCchh-hhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHH
Confidence 5554444444455555566666666532211 222232211221122333333334444433233322233333333333
Q ss_pred cCCchh------HHHHH-HhHhccCCCCCCC-hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHH
Q 004394 458 NVQEPK------AKAAL-IWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA 529 (756)
Q Consensus 458 ~i~~p~------ak~a~-iWiLGEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~ 529 (756)
.+.+-+ +..++ --.+|=||.-.++ ..-+|+.+.-+..+.+ +.|+..++.++=-+-..-. .+.+++++++
T Consensus 1044 AlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~s-Phviqa~~e~~eg~r~~Lg--~~~~~~Y~~Q 1120 (1172)
T KOG0213|consen 1044 ALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETS-PHVIQAFDEAMEGLRVALG--PQAMLKYCLQ 1120 (1172)
T ss_pred hhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCC-hHHHHHHHHHHHHHHHHhc--hHHHHHHHHH
Confidence 332211 11111 2246766655444 3345666666666666 8888888887765543332 1345555444
Q ss_pred hhhcCCChHHHhHHHHHHHHhcC
Q 004394 530 AGLADFHQDVHDRALFYHRLLQY 552 (756)
Q Consensus 530 ~~~~d~d~dVrdRA~~Y~rLL~~ 552 (756)
......--||+| ||+.+..
T Consensus 1121 -GLFHParkVR~~---yw~vyn~ 1139 (1172)
T KOG0213|consen 1121 -GLFHPARKVRKR---YWTVYNS 1139 (1172)
T ss_pred -hccCcHHHHHHH---HHHHHHh
Confidence 244566789988 7776653
No 33
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.95 E-value=0.012 Score=66.80 Aligned_cols=317 Identities=18% Similarity=0.186 Sum_probs=192.6
Q ss_pred HhcCCCc----cchhhhhhhhccCCChhhHHHHHHHHHHccccC-ChHHH---HHHHHHHHHcCCCChHHHHHH---HHH
Q 004394 55 MTIGIDV----SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN-PDLAL---LTINFLQRDCKDEDPMIRGLA---LRS 123 (756)
Q Consensus 55 ~~lG~Dv----s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~-~el~l---L~iNtl~KDL~s~Np~iR~LA---Lrt 123 (756)
..+|.|- -...+.|+.|++.+|...+--+.-.+-+.++.. .+... .+--.+.|=..|+++.+|+.| -|-
T Consensus 72 iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRL 151 (675)
T KOG0212|consen 72 IALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRL 151 (675)
T ss_pred HHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHH
Confidence 3467654 334566778998888876655555554544322 11100 222345666678888898876 344
Q ss_pred HhcCChhhh----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhcCCChhHHHHHH
Q 004394 124 LCSLRVANL----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCL 196 (756)
Q Consensus 124 Ls~I~~~ei----~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv~~Al 196 (756)
+-.|..++- ++.++|-++.-+.+.+|+.|.--+-= +++...-|+.- .-+.+.+-|-.+ |.|+++.|..-+=
T Consensus 152 ikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~W-l~~Lds~P~~~m~~yl~~~ldGLf~~-LsD~s~eVr~~~~ 229 (675)
T KOG0212|consen 152 IKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSW-LYVLDSVPDLEMISYLPSLLDGLFNM-LSDSSDEVRTLTD 229 (675)
T ss_pred HHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHH-HHHHhcCCcHHHHhcchHHHHHHHHH-hcCCcHHHHHHHH
Confidence 555544432 56778888888899999999765444 44444445431 125566777776 7999999985554
Q ss_pred HH----HHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhH----HHHHHHHHHH
Q 004394 197 SA----LQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLED 268 (756)
Q Consensus 197 ~a----L~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e----~~~il~~l~~ 268 (756)
.+ |.||. .+|... +. ...+.-+...+...+|..|.+.|.-+..|.+-.++. ..+++..+.+
T Consensus 230 t~l~~fL~eI~-s~P~s~-----d~-----~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLp 298 (675)
T KOG0212|consen 230 TLLSEFLAEIR-SSPSSM-----DY-----DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILP 298 (675)
T ss_pred HHHHHHHHHHh-cCcccc-----Cc-----ccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhccc
Confidence 44 44553 233210 00 123444556678899999999999999887655443 2455666666
Q ss_pred HhcccchHHHHHHHH----HHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccccee
Q 004394 269 RLQHANGAVVLSTIK----VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF 344 (756)
Q Consensus 269 ~L~~~n~aVvleaik----~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f 344 (756)
++..+-..-..++.. .++.+..+......--+..+...|.+.++++.-+.|..+|+.+..+-.+.|.-+-.|...+
T Consensus 299 c~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~i 378 (675)
T KOG0212|consen 299 CLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSI 378 (675)
T ss_pred CCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHH
Confidence 666543321122211 1222221111000112346677788889888899999999999999999997544444433
Q ss_pred e-----ecCCCCHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHhhh
Q 004394 345 Y-----CQYNEPSYVKKLKLEMLTAVANESNT---YEIVTELCEYAAN 384 (756)
Q Consensus 345 ~-----c~~~dp~~IK~~kLdIL~~L~n~~Nv---~~Iv~EL~~Yl~~ 384 (756)
| -+.|.+.-+=.+.|+++..+|+..|- ..-+..|++-..+
T Consensus 379 f~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL~~f~e 426 (675)
T KOG0212|consen 379 FLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLLEMFKE 426 (675)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhh
Confidence 3 23455567899999999999988765 3444444444333
No 34
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0033 Score=71.68 Aligned_cols=259 Identities=14% Similarity=0.101 Sum_probs=182.1
Q ss_pred hhhhhhhhcc-CCChhhHHHHHHHHHHccccCChHHHH-----HHHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhH--
Q 004394 64 VFGEMVMCSA-TSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLV-- 133 (756)
Q Consensus 64 lF~~Vi~l~~-s~d~~~KkL~YLyl~~~~~~~~el~lL-----~iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~-- 133 (756)
..+..++++. .++..++.-.=-++++.+...+|..-. ++-.|.+=+.++++.++.-|.-++|+|.. +..-
T Consensus 110 ~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 110 VVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred cHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 3455566765 444667777777888888766664333 35568888999999999999999999843 2222
Q ss_pred ---HHHHHHHHhhcCCCCh-HHHHHHHHHHHHHhhhc-CCcc--cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 134 ---EYLVGPLGLGLKDNNS-YVRTVAVIGVLKLYHIS-APTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 134 ---e~l~~~v~~~L~d~~p-yVRKkAalal~kl~~~~-p~~~--~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
-.++.++...+..+++ -..|.|.-++-.+++.. |.-- .....++.|..+ +...|+.|+..|+-++.++....
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~l-l~~~D~~Vl~Da~WAlsyLsdg~ 268 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRL-LHSTDEEVLTDACWALSYLTDGS 268 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHhcCC
Confidence 3345677777777776 67789999999999854 4321 113456778776 69999999999999999997533
Q ss_pred ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHH-----HHHHHHhc-ccchHHHHH
Q 004394 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIM-----NLLEDRLQ-HANGAVVLS 280 (756)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il-----~~l~~~L~-~~n~aVvle 280 (756)
++ .+...+....+.+|...|..+++=.+.-.|+.+......++.....++ ..+..++. +....+.-|
T Consensus 269 ne-------~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 269 NE-------KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred hH-------HHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 22 112234445678888888889888899999999998777766665544 45666776 556679999
Q ss_pred HHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 004394 281 TIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (756)
Q Consensus 281 aik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~ 330 (756)
|+.++-+++....+=.+.++. .+.+.|+.+|++.+-.+|.-|.-+|.-+.
T Consensus 342 AcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 342 ACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred HHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 999999988654431223332 35567788888777667766666665443
No 35
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.87 E-value=0.053 Score=64.94 Aligned_cols=311 Identities=15% Similarity=0.122 Sum_probs=163.2
Q ss_pred CCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHh-cCCCccchhhhhhhhcc--CCChhhHHHHHHHHH
Q 004394 12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMT-IGIDVSAVFGEMVMCSA--TSDIVLKKMCYLYVG 88 (756)
Q Consensus 12 ~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~-lG~Dvs~lF~~Vi~l~~--s~d~~~KkL~YLyl~ 88 (756)
+..++.+---.++|-++|++....- ++ +.-++.++-++-+.. ..-+|.. ..++|+. .+++.+-|+.|+.=.
T Consensus 16 ssDKDfRfMAtsDLm~eLqkdsi~L--d~-dSe~kvv~~lLklL~D~ngEVQn---lAVKClg~lvsKvke~~le~~ve~ 89 (1233)
T KOG1824|consen 16 SSDKDFRFMATSDLMTELQKDSIKL--DD-DSERKVVKMLLKLLEDKNGEVQN---LAVKCLGPLVSKVKEDQLETIVEN 89 (1233)
T ss_pred CCCcchhhhhHHHHHHHHHhhhhhc--cc-cchhHHHHHHHHHHhccCcHHHH---HHHHHHHHHHhhchHHHHHHHHHH
Confidence 4556667777888999998753222 12 223334444443332 1113322 2245444 245555555555433
Q ss_pred Hccc----------------------cCC----hHHHHHHHHHHHHcCCCC------hHHHHHHHHHHhcCC--h----h
Q 004394 89 NYAK----------------------VNP----DLALLTINFLQRDCKDED------PMIRGLALRSLCSLR--V----A 130 (756)
Q Consensus 89 ~~~~----------------------~~~----el~lL~iNtl~KDL~s~N------p~iR~LALrtLs~I~--~----~ 130 (756)
.+.+ -.| -++--++-+|..-+.+.+ .-+++-++..|+-+. - +
T Consensus 90 L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~ 169 (1233)
T KOG1824|consen 90 LCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP 169 (1233)
T ss_pred HhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence 3322 111 122222222322222222 236666666666542 1 2
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccch
Q 004394 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (756)
Q Consensus 131 ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 210 (756)
++=.-+...++--+..+..-|||||+.|+..+-...+.... .+.++.|.+-|-+-..+.-+..-+.+|.+|++..+.-.
T Consensus 170 ~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~ 248 (1233)
T KOG1824|consen 170 NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRF 248 (1233)
T ss_pred chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchh
Confidence 23333344444445667889999999999999987776542 23444444443333445555666778888877544211
Q ss_pred hHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHH---hhCCCChh-HHHHHHHHHHHHhcc--------------
Q 004394 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVA---KYVPLDSN-EIFDIMNLLEDRLQH-------------- 272 (756)
Q Consensus 211 ~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~---~y~p~d~~-e~~~il~~l~~~L~~-------------- 272 (756)
+... ..+ -+.+-.-++...+-++=+.-+.|+.+. +++|.+-. -..++++.+...+..
T Consensus 249 ---~~h~-~~i-vp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~ 323 (1233)
T KOG1824|consen 249 ---GSHL-DKI-VPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDA 323 (1233)
T ss_pred ---hccc-chh-hHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhh
Confidence 0000 001 123334444444444445555555444 34443210 012233333332210
Q ss_pred --------------------cchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 273 --------------------ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 273 --------------------~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
.+=-|..+|+||+..+..+..++-..+++.+++.++.-+..++-|++--+......+...
T Consensus 324 ~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~q 403 (1233)
T KOG1824|consen 324 MFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQ 403 (1233)
T ss_pred hhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 112488999999988776665555566778888888888888999999998888777665
Q ss_pred CC
Q 004394 333 AP 334 (756)
Q Consensus 333 ~p 334 (756)
-|
T Consensus 404 t~ 405 (1233)
T KOG1824|consen 404 TR 405 (1233)
T ss_pred CC
Confidence 44
No 36
>PF14764 SPG48: AP-5 complex subunit, vesicle trafficking
Probab=97.86 E-value=0.038 Score=62.43 Aligned_cols=127 Identities=20% Similarity=0.254 Sum_probs=72.8
Q ss_pred HHHHHHhhCCCcc----hHHHHHHHHhhhccCC-chhHHHHHHhHhccCCCCCCCh---HHHHHHHhhhh----------
Q 004394 432 LVKDLLRKYPQWS----HDCIAVVGSISSQNVQ-EPKAKAALIWMLGEYSQDMQDA---PYILESLTENW---------- 493 (756)
Q Consensus 432 ~i~~Il~~~p~~~----~~~~~~l~~l~~~~i~-~p~ak~a~iWiLGEy~~~i~~~---~~iL~~l~~~f---------- 493 (756)
.+-.+++++|.+- +.+.+.+++. .++. -.+.-..++|+||||+.---+. .++++.+.+..
T Consensus 291 ~ll~lfk~~PsLvv~l~~~ilef~g~~--~~~~~k~~l~~hlvWaIGEy~s~~~d~rct~~~i~~~fE~LE~llyE~~~~ 368 (459)
T PF14764_consen 291 QLLALFKRHPSLVVELSKEILEFLGSA--SNIHSKEELFTHLVWAIGEYLSVSYDRRCTVEQINEFFEALEALLYEVTQS 368 (459)
T ss_pred HHHHHHHhCcHHHHHhHHHHHHHhccc--ccccchhHHHHHHHHHHhcccccccCCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777642 1111122211 1232 2344566899999997654332 44443332211
Q ss_pred c-------cCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHH-hhh----------cC--CChHHHhHHHHHHHHhcCC
Q 004394 494 E-------EEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA-AGL----------AD--FHQDVHDRALFYHRLLQYN 553 (756)
Q Consensus 494 ~-------~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~-~~~----------~d--~d~dVrdRA~~Y~rLL~~~ 553 (756)
. ...++.+-..++|+++|+..+.++-.- .+.-.|. ..+ ++ .+..|..||.+|+.||+.+
T Consensus 369 ~~~~~~~~~~~~~rl~~~lmt~laKLAsr~~dl~p-Rv~l~LsK~~~~~~s~~~~~~~~~~~~~~v~~RA~el~~LLk~P 447 (459)
T PF14764_consen 369 RRDPSASRPSSQPRLMTVLMTALAKLASRSQDLIP-RVSLCLSKMRTLVQSPAVSSVYSEEDDEAVLTRATELLNLLKMP 447 (459)
T ss_pred cccccccCCCCchhHHHHHHHHHHHHHHhCHhhhH-HHHHHHHHHHHhccCCccccccCcccHHHHHHHHHHHHHHhcCc
Confidence 1 011256778899999999999874322 1111122 112 22 4799999999999999874
Q ss_pred HHHHHhhcC
Q 004394 554 VSVAERVVN 562 (756)
Q Consensus 554 ~e~a~~vv~ 562 (756)
..|.-|+.
T Consensus 448 -svA~~vL~ 455 (459)
T PF14764_consen 448 -SVAQFVLT 455 (459)
T ss_pred -hHHHHhcC
Confidence 77776665
No 37
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.012 Score=69.36 Aligned_cols=314 Identities=16% Similarity=0.222 Sum_probs=182.7
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhc
Q 004394 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (756)
Q Consensus 142 ~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll 221 (756)
|++.+++--=+|...+|+.=+..-..|... =+.+.|++= |+.+|.-|++-|+++|..|+. .|.|++..
T Consensus 77 KLias~~f~dKRiGYLaamLlLdE~qdvll--LltNslknD-L~s~nq~vVglAL~alg~i~s------~Emardla--- 144 (866)
T KOG1062|consen 77 KLIASDNFLDKRIGYLAAMLLLDERQDLLL--LLTNSLKND-LNSSNQYVVGLALCALGNICS------PEMARDLA--- 144 (866)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccchHHHH--HHHHHHHhh-ccCCCeeehHHHHHHhhccCC------HHHhHHhh---
Confidence 344444444466666666555543333220 012333333 356777788888888888764 23444321
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH
Q 004394 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE 301 (756)
Q Consensus 222 ~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~ 301 (756)
+-+.+|+ ...+|+..-|.+-+..++....++..+.++.....+|...+.+|+..++..+..+....++.. .-++
T Consensus 145 --peVe~Ll---~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l-~~fr 218 (866)
T KOG1062|consen 145 --PEVERLL---QHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDAL-SYFR 218 (866)
T ss_pred --HHHHHHH---hCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHH-HHHH
Confidence 2244444 347888888888888888777888888888888888888888888888888776653322210 1122
Q ss_pred HHHHHHHHhh----c-----------CCCcchHHHHHHHHHHHHhhCCcc---c--------c-----cc---------c
Q 004394 302 RIKAPLLTLV----S-----------SGSPEQSYAVLSHLHILVMRAPFI---F--------A-----SD---------Y 341 (756)
Q Consensus 302 rl~~~L~~LL----s-----------s~~~nirYvaL~~l~~L~~~~p~l---f--------~-----~~---------~ 341 (756)
++.+-|++.| + -++|-+|.-.|+.+..+-+.+++. + . ++ +
T Consensus 219 ~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V 298 (866)
T KOG1062|consen 219 DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECV 298 (866)
T ss_pred HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 2333333222 1 135666666676666665555421 0 0 00 1
Q ss_pred ceeeec------------------CCCCHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 004394 342 KHFYCQ------------------YNEPSYVKKLKLEMLTAVANES--NTYEIVTELCEYAANVDIPIARESIRAVGKIA 401 (756)
Q Consensus 342 ~~f~c~------------------~~dp~~IK~~kLdIL~~L~n~~--Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA 401 (756)
+.++|. .|+|.-||..+|+.|.++++.+ -++.==.-+++++.+.|..++|++..-.-.+.
T Consensus 299 ~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 299 RTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 112222 2344445555555555544332 12222223568889999999998877654443
Q ss_pred hhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC-CCcchHHHHHHHHhhh--ccCCchhHHHHHHhHhccC
Q 004394 402 LQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY-PQWSHDCIAVVGSISS--QNVQEPKAKAALIWMLGEY 475 (756)
Q Consensus 402 ~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~-p~~~~~~~~~l~~l~~--~~i~~p~ak~a~iWiLGEy 475 (756)
.. .++...++-|+++|....+++..++...+..+..+| |+.+=+ +..+-+++. -+.-.+++...++-+|++=
T Consensus 379 n~-~Nv~~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~-idtml~Vl~~aG~~V~~dv~~nll~LIa~~ 453 (866)
T KOG1062|consen 379 NE-SNVRVMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH-IDTMLKVLKTAGDFVNDDVVNNLLRLIANA 453 (866)
T ss_pred cc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH-HHHHHHHHHhcccccchhhHHHHHHHHhcC
Confidence 22 356778999999999998999999999999999987 443221 222223221 2334455666677777764
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.76 E-value=0.16 Score=59.48 Aligned_cols=498 Identities=18% Similarity=0.167 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHHhcCCCcc-chhhh----hh-hhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHH
Q 004394 43 SKRELFKKVISYMTIGIDVS-AVFGE----MV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMI 116 (756)
Q Consensus 43 ~kk~~lkKlI~~~~lG~Dvs-~lF~~----Vi-~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~i 116 (756)
+-|+.+-|+|--..-|-|.- .=|.| |+ -++--+|+--+-.|--.++++++. .-++ -.|.+++-|..+.+|++
T Consensus 415 qerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLaka-aGla-~mistmrpDidn~deYV 492 (1172)
T KOG0213|consen 415 QERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA-AGLA-TMISTMRPDIDNKDEYV 492 (1172)
T ss_pred hhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHH-hhhH-HHHHhhcCCcccccHHH
Confidence 34555556665555454321 11222 12 244456777777776677776643 2332 35789999999999999
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHhcCCChhHH-
Q 004394 117 RGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVV- 192 (756)
Q Consensus 117 R~LALrtLs~I~~~ei~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL~D~d~~Vv- 192 (756)
|--.-|+.+-....-=++.+.|.++....+. +.--|.+.+-|+.++..+..-.+. -..+.+.+... +.|...-|.
T Consensus 493 Rnttarafavvasalgip~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g-l~De~qkVR~ 571 (1172)
T KOG0213|consen 493 RNTTARAFAVVASALGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG-LKDEQQKVRT 571 (1172)
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh-hcccchhhhh
Confidence 9887777776544444566777788888776 788899988888888765432221 13456677776 678777665
Q ss_pred --HHHHHHHHHHHhhcccchhH--HHHHHHhhccH---HHHHHHHHH---------------------------hccCCh
Q 004394 193 --ANCLSALQEIWSLEASTSEE--ASREREALISK---PVIYYLLNR---------------------------IKEFSE 238 (756)
Q Consensus 193 --~~Al~aL~eI~~~~~~~~~~--~~~~~~~ll~~---~~~~~Ll~~---------------------------l~~~~~ 238 (756)
++|+++|.|....-+.-.+. .|| .|.-+.. ..+..+|++ ...++|
T Consensus 572 itAlalsalaeaa~Pygie~fDsVlkp-Lwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDe 650 (1172)
T KOG0213|consen 572 ITALALSALAEAATPYGIEQFDSVLKP-LWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDE 650 (1172)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHH-HHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChH
Confidence 45555555543211100000 010 0000000 011122222 223455
Q ss_pred hHHHHHHHHHHhhCCCChhHH----HHHHHHHHHH-------hcccchH-H-----------------------------
Q 004394 239 WAQCLVLELVAKYVPLDSNEI----FDIMNLLEDR-------LQHANGA-V----------------------------- 277 (756)
Q Consensus 239 W~Qi~IL~lL~~y~p~d~~e~----~~il~~l~~~-------L~~~n~a-V----------------------------- 277 (756)
=..-.+|+.+.+++..+.-+. ++++..+... +...|.- +
T Consensus 651 emkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~v~~lkde~e 730 (1172)
T KOG0213|consen 651 EMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRVVLDLKDEPE 730 (1172)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHHhhhhccccH
Confidence 555666666666654432211 1111111100 0001111 1
Q ss_pred -----HHHHHHHH-HhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccc-----eeee
Q 004394 278 -----VLSTIKVF-LHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-----HFYC 346 (756)
Q Consensus 278 -----vleaik~i-i~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-----~f~c 346 (756)
+.+++.-+ -.+... ++...+-+++...++--+...+.+.. +.|..+-.++..-..-+++|+. ++.-
T Consensus 731 ~yrkm~~etv~ri~~~lg~~--diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~stiL~r 807 (1172)
T KOG0213|consen 731 QYRKMVAETVSRIVGRLGAA--DIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICSTILWR 807 (1172)
T ss_pred HHHHHHHHHHHHHHhccccc--cccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHHHHHH
Confidence 22222211 111111 11111112222222211222222222 3333333333222112333432 2344
Q ss_pred cCCCCHHHHHHHHHHHHHhcCC-CCH------HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHh------hcCChhHHHHH
Q 004394 347 QYNEPSYVKKLKLEMLTAVANE-SNT------YEIVTELCEYAANVDIPIARESIRAVGKIAL------QQYDVNAIVDR 413 (756)
Q Consensus 347 ~~~dp~~IK~~kLdIL~~L~n~-~Nv------~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~------k~~~~~~~vd~ 413 (756)
+.|.+.-+|..++|++..++-- +++ ...=.-|.||+.+.+++.---++.+|..|.. .+|.....+..
T Consensus 808 Lnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPr 887 (1172)
T KOG0213|consen 808 LNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPR 887 (1172)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence 6788899999999998887421 111 1112235689988888876655555544432 23443334444
Q ss_pred HHHHhhh-------------------cCchhhHHHHHHHH----HHHhh-CCCcchHHHH-------------HHHHhhh
Q 004394 414 LLQFLEM-------------------EKDYVTAEALVLVK----DLLRK-YPQWSHDCIA-------------VVGSISS 456 (756)
Q Consensus 414 Ll~LL~~-------------------~~~~v~~E~i~~i~----~Il~~-~p~~~~~~~~-------------~l~~l~~ 456 (756)
|.-+|.+ +.+||+.--|..|+ +++.. ..+++..+.+ +|..|+
T Consensus 888 ltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVLatLl- 966 (1172)
T KOG0213|consen 888 LTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVLATLL- 966 (1172)
T ss_pred chHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHH-
Confidence 4444444 34455544444322 11111 1111111111 111111
Q ss_pred ccCC--chhH---HHHHHhHhccCCCCCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHH---HHH
Q 004394 457 QNVQ--EPKA---KAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLG---AAL 528 (756)
Q Consensus 457 ~~i~--~p~a---k~a~iWiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~---~vL 528 (756)
+++. +-.- -..+|-|+||||.. -.+|-.+.+.|..-. ..||.-+|.|+.-+|-...+..++.+- -+|
T Consensus 967 nnLkvqeRq~RvcTtvaIaIVaE~c~p----FtVLPalmneYrtPe-~nVQnGVLkalsf~FeyigemskdYiyav~Pll 1041 (1172)
T KOG0213|consen 967 NNLKVQERQNRVCTTVAIAIVAETCGP----FTVLPALMNEYRTPE-ANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLL 1041 (1172)
T ss_pred hcchHHHHHhchhhhhhhhhhhhhcCc----hhhhHHHHhhccCch-hHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHH
Confidence 2222 1111 23457889999864 356777777887766 889999999999777554433444433 345
Q ss_pred HhhhcCCChHHHhHHHHHHHHhcCC
Q 004394 529 AAGLADFHQDVHDRALFYHRLLQYN 553 (756)
Q Consensus 529 ~~~~~d~d~dVrdRA~~Y~rLL~~~ 553 (756)
.-+..|.|+-=||-|.--.+=+..+
T Consensus 1042 eDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1042 EDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred HHhhccccHHHHHHHHHHHHHHhcC
Confidence 5566678888888888776666654
No 39
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.75 E-value=0.1 Score=65.44 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=118.4
Q ss_pred ChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhH--HHHHHHHHhhcCCCChHH
Q 004394 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLV--EYLVGPLGLGLKDNNSYV 151 (756)
Q Consensus 76 d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~--e~l~~~v~~~L~d~~pyV 151 (756)
++..-++.|.|+..-..--.. -=-..+.+..-+..+-+-+|+-|||+++.|.. +.+. +.+-..|..-+.|++.-|
T Consensus 793 d~~~a~li~~~la~~r~f~~s-fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasV 871 (1692)
T KOG1020|consen 793 DDDDAKLIVFYLAHARSFSQS-FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASV 871 (1692)
T ss_pred cchhHHHHHHHHHhhhHHHHh-hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHH
Confidence 455567777776643221111 11234666667778889999999999999854 3332 566677888899999999
Q ss_pred HHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHH
Q 004394 152 RTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN 231 (756)
Q Consensus 152 RKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~ 231 (756)
|-+|+-=+.|...-+|+.+ .++.+.+.+- ..|.-.+|.=.++..+.+|+...|+.. .+ ..+.-+++.
T Consensus 872 REAaldLvGrfvl~~~e~~--~qyY~~i~er-IlDtgvsVRKRvIKIlrdic~e~pdf~-----~i-----~~~cakmlr 938 (1692)
T KOG1020|consen 872 REAALDLVGRFVLSIPELI--FQYYDQIIER-ILDTGVSVRKRVIKILRDICEETPDFS-----KI-----VDMCAKMLR 938 (1692)
T ss_pred HHHHHHHHhhhhhccHHHH--HHHHHHHHhh-cCCCchhHHHHHHHHHHHHHHhCCChh-----hH-----HHHHHHHHH
Confidence 9999999999999999988 6788888887 579999999999999999998777532 11 235667787
Q ss_pred HhccCChhHHHHHHHHHHhh
Q 004394 232 RIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 232 ~l~~~~~W~Qi~IL~lL~~y 251 (756)
++++-..-.|-.+.+.+.++
T Consensus 939 Rv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 939 RVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HhccchhHHHHHHHHHHHHH
Confidence 77766555566666666653
No 40
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0054 Score=71.47 Aligned_cols=379 Identities=15% Similarity=0.175 Sum_probs=195.2
Q ss_pred hHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Ch-----hhhHHHHHHHHHhhcCCCChH
Q 004394 79 LKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV-----ANLVEYLVGPLGLGLKDNNSY 150 (756)
Q Consensus 79 ~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~-----~ei~e~l~~~v~~~L~d~~py 150 (756)
.||+.++.+. -+.-|.+ +|- -++-=+-+.|..+.-|=+-..-.+ .. +||+ -+...+++-|+||+.|
T Consensus 41 mK~ii~~mln--Ge~~p~L-lm~--IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMI-Lvcna~RkDLQHPNEy 114 (948)
T KOG1058|consen 41 MKKIIALMLN--GEDLPSL-LMT--IIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMI-LVCNAYRKDLQHPNEY 114 (948)
T ss_pred HHHHHHHHHc--CCCchHH-HHH--HhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHH-HHHHHHhhhccCchHh
Confidence 5676665442 2233443 221 122224455666655554443322 21 3333 3467899999999999
Q ss_pred HHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHH
Q 004394 151 VRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLL 230 (756)
Q Consensus 151 VRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll 230 (756)
||-...-=+.|+ ..|+++ +.+.+.++.. ++.+++-|..||+.++.+|.+.... ..|+... .+.+.+
T Consensus 115 iRG~TLRFLckL--kE~ELl--epl~p~Irac-leHrhsYVRrNAilaifsIyk~~~~----L~pDape-----Li~~fL 180 (948)
T KOG1058|consen 115 IRGSTLRFLCKL--KEPELL--EPLMPSIRAC-LEHRHSYVRRNAILAIFSIYKNFEH----LIPDAPE-----LIESFL 180 (948)
T ss_pred hcchhhhhhhhc--CcHHHh--hhhHHHHHHH-HhCcchhhhhhhheeehhHHhhhhh----hcCChHH-----HHHHHH
Confidence 998765444443 457877 6789999999 6999999999999999999875221 1222222 233333
Q ss_pred HHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccch---HHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Q 004394 231 NRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANG---AVVLSTIKVFLHLTLSMTDVHQQVYERIKAPL 307 (756)
Q Consensus 231 ~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~---aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L 307 (756)
.+ +-+|-..-. .+..+...|++.+.+.+........+-|+ .|+.|-|+-.++-. +..+ .|....+
T Consensus 181 ~~--e~DpsCkRN---AFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~---p~~~----~~~i~~i 248 (948)
T KOG1058|consen 181 LT--EQDPSCKRN---AFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLAN---PAEK----ARYIRCI 248 (948)
T ss_pred Hh--ccCchhHHH---HHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcC---HHHh----hHHHHHH
Confidence 22 223322111 11122234666666666665556665554 45666665555422 2222 2334456
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhhCCcccccccc-eeeec-CCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH----HHH
Q 004394 308 LTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFYCQ-YNEPSYVKKLKLEMLTAVANESNTYEIVTEL----CEY 381 (756)
Q Consensus 308 ~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-~f~c~-~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL----~~Y 381 (756)
..||++.++.++|-+--.+..+. ..|..+..-.. .+-|. ...|--+|..-||-|+.+. .+-+.|+.+| +..
T Consensus 249 ~~lL~stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~--~~~~~il~~l~mDvLrv 325 (948)
T KOG1058|consen 249 YNLLSSTSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELK--ALHEKILQGLIMDVLRV 325 (948)
T ss_pred HHHHhcCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHh--hhhHHHHHHHHHHHHHH
Confidence 77888888888886654443321 22332222110 11111 1122346666666666664 2223334333 234
Q ss_pred hhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHH-HhhhcC------chhhHHHHHHHHHHHhhCCCcchHHHHHHHHh
Q 004394 382 AANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQ-FLEMEK------DYVTAEALVLVKDLLRKYPQWSHDCIAVVGSI 454 (756)
Q Consensus 382 l~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~-LL~~~~------~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l 454 (756)
+...|-+++++...-.-.++... ++...++.+-+ +.++.+ ....+..+..+.---.++|+.....+..+-+.
T Consensus 326 Lss~dldvr~Ktldi~ldLvssr-Nvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~f 404 (948)
T KOG1058|consen 326 LSSPDLDVRSKTLDIALDLVSSR-NVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDF 404 (948)
T ss_pred cCcccccHHHHHHHHHHhhhhhc-cHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 44567777777666544444331 22233333322 222211 12234444444555567888765554444333
Q ss_pred hhccCCchhHHHHHHhHhccCCCCCCC-hHHHHHHHhhhhcc
Q 004394 455 SSQNVQEPKAKAALIWMLGEYSQDMQD-APYILESLTENWEE 495 (756)
Q Consensus 455 ~~~~i~~p~ak~a~iWiLGEy~~~i~~-~~~iL~~l~~~f~~ 495 (756)
+.+ .++.+-..++-.+.|--+..++ -..+++.+++.|..
T Consensus 405 isD--~N~~aas~vl~FvrE~iek~p~Lr~~ii~~l~~~~~~ 444 (948)
T KOG1058|consen 405 ISD--SNEAAASDVLMFVREAIEKFPNLRASIIEKLLETFPQ 444 (948)
T ss_pred hcc--CCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHhhhh
Confidence 321 2344445556667776666654 33455666655543
No 41
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.67 E-value=0.0029 Score=71.40 Aligned_cols=198 Identities=14% Similarity=-0.049 Sum_probs=105.9
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
++..+.+-+.|.++.+|.-|.++|+.|+.+.... .+...|.|.+|.||..++-++. .... +-.+.+.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~----~L~~~L~~~~p~vR~aal~al~-~r~~--------~~~~~L~ 153 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEP----WLEPLLAASEPPGRAIGLAALG-AHRH--------DPGPALE 153 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHH----HHHHHhcCCChHHHHHHHHHHH-hhcc--------ChHHHHH
Confidence 3677788888888888888888888888776554 4556667788888876664333 3221 2234566
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHh-------------hccHHHHHHHHHHhccCChhHHHHHHHH
Q 004394 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREA-------------LISKPVIYYLLNRIKEFSEWAQCLVLEL 247 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~-------------ll~~~~~~~Ll~~l~~~~~W~Qi~IL~l 247 (756)
.+ ++|.|+.|..+|+.+|.++...+.......+..-+. +=++....-++......+.+....+...
T Consensus 154 ~~-L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~ 232 (410)
T TIGR02270 154 AA-LTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVL 232 (410)
T ss_pred HH-hcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHH
Confidence 65 578888888888888777743221100000000000 0000000001110111122221111112
Q ss_pred HHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 004394 248 VAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (756)
Q Consensus 248 L~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~ 327 (756)
+..- + + ...++.+..+++..+ |..+++.++..+... +..++|+..+.. +.++.++-..+.
T Consensus 233 lal~-~-~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l~d--~~~aR~A~eA~~ 292 (410)
T TIGR02270 233 LAVA-G-G----PDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAMRE--PPWARLAGEAFS 292 (410)
T ss_pred HHhC-C-c----hhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHhcC--cHHHHHHHHHHH
Confidence 1111 1 1 145566666666544 777777777766542 245667777763 338888888888
Q ss_pred HHHhh
Q 004394 328 ILVMR 332 (756)
Q Consensus 328 ~L~~~ 332 (756)
+|.-.
T Consensus 293 ~ItG~ 297 (410)
T TIGR02270 293 LITGM 297 (410)
T ss_pred HhhCC
Confidence 88754
No 42
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.029 Score=65.73 Aligned_cols=337 Identities=15% Similarity=0.181 Sum_probs=208.5
Q ss_pred hhhHHHHHHHHHHccccCChHHH-HHHHHHHHHcCCCChHHHHHHHHHHhcC-------ChhhhHHHHHHHHHhhcCCCC
Q 004394 77 IVLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSL-------RVANLVEYLVGPLGLGLKDNN 148 (756)
Q Consensus 77 ~~~KkL~YLyl~~~~~~~~el~l-L~iNtl~KDL~s~Np~iR~LALrtLs~I-------~~~ei~e~l~~~v~~~L~d~~ 148 (756)
-..-|-+-..++.++....|..+ .+...+..-++++|=..|-.|.-++|+| +...++....|.+.+++.|++
T Consensus 340 Wnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~s 419 (859)
T KOG1241|consen 340 WNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPS 419 (859)
T ss_pred CcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCch
Confidence 33456666666666665555433 6667777799999999999999999998 334578888999999999999
Q ss_pred hHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhH---hcCCChhHHHHHHHHHHHHHhhcccchhHHHHHH--Hhhcc-
Q 004394 149 SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM---LNDPDPQVVANCLSALQEIWSLEASTSEEASRER--EALIS- 222 (756)
Q Consensus 149 pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lL---L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~--~~ll~- 222 (756)
-.||.+|+-++.|+....|+.+........+...+ ++| .|.|..|+.-++..+.+.-++. .+.+ ....+
T Consensus 420 l~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA----~~s~~qt~~~t~ 494 (859)
T KOG1241|consen 420 LWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEA----AVSNGQTDPATP 494 (859)
T ss_pred hhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHh----ccCCCCCCccch
Confidence 99999999999999999998875433333222221 334 6999999998888876432210 0000 00111
Q ss_pred --HHHHHHHHHHhc--c-CChhHHHHHHHHHHhhCCCChhHHHH--------HHHHHHHHhc-----cc-----c--hHH
Q 004394 223 --KPVIYYLLNRIK--E-FSEWAQCLVLELVAKYVPLDSNEIFD--------IMNLLEDRLQ-----HA-----N--GAV 277 (756)
Q Consensus 223 --~~~~~~Ll~~l~--~-~~~W~Qi~IL~lL~~y~p~d~~e~~~--------il~~l~~~L~-----~~-----n--~aV 277 (756)
..++..|+..-. + ...=+.+..-+.|.......+++... ++..+...++ .. | -++
T Consensus 495 ~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~ 574 (859)
T KOG1241|consen 495 FYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSL 574 (859)
T ss_pred hHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHH
Confidence 123444444211 1 12335666666666554444333322 2333333333 11 1 256
Q ss_pred HHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHhhCCcccccccceee--e----cCCC
Q 004394 278 VLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHLHILVMRAPFIFASDYKHFY--C----QYNE 350 (756)
Q Consensus 278 vleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss-~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~--c----~~~d 350 (756)
+..++..++.-..+ +. .++-+.+.+.+.+++++ ++.-+.--++-.+..++..-..-|.+|+..|. . ..-.
T Consensus 575 Lc~~Lq~i~rk~~~--~~-~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~ 651 (859)
T KOG1241|consen 575 LCNTLQSIIRKVGS--DI-REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQ 651 (859)
T ss_pred HHHHHHHHHHHccc--cc-hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcch
Confidence 66666666654332 21 23345566677888876 44445555555555555544444666665542 1 1234
Q ss_pred CHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHhhh--CCHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHhhhc
Q 004394 351 PSYVKKLKLEMLTAVANESN------TYEIVTELCEYAAN--VDIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEME 421 (756)
Q Consensus 351 p~~IK~~kLdIL~~L~n~~N------v~~Iv~EL~~Yl~~--~D~~~~~~~I~aIg~lA~k~~-~~~~~vd~Ll~LL~~~ 421 (756)
+..|-..+.-+.-.||+.=+ ..++...|...+.+ .+.+++..+....|.||.... +...|++.++.++...
T Consensus 652 e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~a 731 (859)
T KOG1241|consen 652 EYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQA 731 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45677778887777776533 23456666666655 356788889999999998874 6678888888888754
No 43
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.016 Score=68.05 Aligned_cols=295 Identities=14% Similarity=0.148 Sum_probs=163.4
Q ss_pred HHHHHHHHHcCC---CChHHHHHHHHHHhcCChhh--hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCC
Q 004394 100 LTINFLQRDCKD---EDPMIRGLALRSLCSLRVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (756)
Q Consensus 100 L~iNtl~KDL~s---~Np~iR~LALrtLs~I~~~e--i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~ 174 (756)
|++|.+..-+.. .||+-+++-+|..+..-..+ ..-++.+.+..+|.|+...|--.|+.++..++..++..+ ..
T Consensus 205 la~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~p 282 (865)
T KOG1078|consen 205 LAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKENQQADSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--AP 282 (865)
T ss_pred HHHHHHHHHHccccccchhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--ch
Confidence 455555544433 56777777777666654333 233667777777777777777777777777777776655 33
Q ss_pred chHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC
Q 004394 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~ 254 (756)
.+..|+-+ ++.+.+....+|+..|++++...|..- + -|+
T Consensus 283 avs~Lq~f-lssp~~~lRfaAvRtLnkvAm~~P~~v-----------~------~cN----------------------- 321 (865)
T KOG1078|consen 283 AVSVLQLF-LSSPKVALRFAAVRTLNKVAMKHPQAV-----------T------VCN----------------------- 321 (865)
T ss_pred HHHHHHHH-hcCcHHHHHHHHHHHHHHHHHhCCccc-----------c------ccc-----------------------
Confidence 45555554 567777777777777777766544310 0 000
Q ss_pred ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC
Q 004394 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (756)
Q Consensus 255 d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p 334 (756)
--+.+++...|-++-.=|+-+++.-+.. .-.+|+..++.+|++.=+.|-+.++.+++..++.++|
T Consensus 322 ---------~elE~lItd~NrsIat~AITtLLKTG~e------~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp 386 (865)
T KOG1078|consen 322 ---------LDLESLITDSNRSIATLAITTLLKTGTE------SSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP 386 (865)
T ss_pred ---------hhHHhhhcccccchhHHHHHHHHHhcch------hHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc
Confidence 1123444555655555555555554322 1135666677777776666778888888888888877
Q ss_pred ccc---ccccceeeecCCCCHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC---
Q 004394 335 FIF---ASDYKHFYCQYNEPSYVKKLKLEMLTAVA--NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD--- 406 (756)
Q Consensus 335 ~lf---~~~~~~f~c~~~dp~~IK~~kLdIL~~L~--n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~--- 406 (756)
..- ...+....+ .+.--.-|+--.|.+..++ |.+-=+..+..|.+|+.+. +|...+++-++.++..-|.
T Consensus 387 ~k~~~~m~FL~~~Lr-~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDc--e~~~i~~rILhlLG~EgP~a~~ 463 (865)
T KOG1078|consen 387 RKHTVMMNFLSNMLR-EEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDC--EFTQIAVRILHLLGKEGPKAPN 463 (865)
T ss_pred HHHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhc--cchHHHHHHHHHHhccCCCCCC
Confidence 310 000000111 1111223334444444433 3333444556666665433 3555555656666555442
Q ss_pred hhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhh
Q 004394 407 VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS 455 (756)
Q Consensus 407 ~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~ 455 (756)
...|+..+...+-.....|..+++..+..+..+.+..+..+..++.+++
T Consensus 464 Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~ 512 (865)
T KOG1078|consen 464 PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCL 512 (865)
T ss_pred cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHh
Confidence 2346665555555555566666666666666555555555544455444
No 44
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.56 E-value=0.0089 Score=65.47 Aligned_cols=185 Identities=21% Similarity=0.180 Sum_probs=124.4
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L 144 (756)
...+++.+.+++...|.-+.-++..+.. .-++..+.+-+.|.++.+|..|..+++.++.++-++.++..+..
T Consensus 45 ~~~~~~~l~~~~~~vr~~aa~~l~~~~~------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~-- 116 (335)
T COG1413 45 ADELLKLLEDEDLLVRLSAAVALGELGS------EEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN-- 116 (335)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhhhch------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc--
Confidence 4556778888888888887777555432 45788999999999999999999999999999888776666555
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCCh------------hHHHHHHHHHHHHHhhcccchhH
Q 004394 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP------------QVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 145 ~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~------------~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
|.+.+||.+|+.++.++.... -+..+... ++|.+. .|..+++.++..+...
T Consensus 117 -d~~~~vR~~aa~aL~~~~~~~--------a~~~l~~~-l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~------- 179 (335)
T COG1413 117 -DENEGVRAAAARALGKLGDER--------ALDPLLEA-LQDEDSGSAAAALDAALLDVRAAAAEALGELGDP------- 179 (335)
T ss_pred -CCcHhHHHHHHHHHHhcCchh--------hhHHHHHH-hccchhhhhhhhccchHHHHHHHHHHHHHHcCCh-------
Confidence 899999999999999887642 24445565 467663 3555555555554321
Q ss_pred HHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 004394 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
..+..+...+.+...-.+......|......+ ..+...+...+++.+.-|...++..+..+.
T Consensus 180 -----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 180 -----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN----VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred -----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 11222333344444434444444444433222 345566667777788888888888777665
No 45
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0043 Score=66.96 Aligned_cols=298 Identities=18% Similarity=0.199 Sum_probs=194.9
Q ss_pred hhhhccCCChhhHHHHHHHHHHccccCChHHH----HHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----hHH-HHH
Q 004394 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL----LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LVE-YLV 137 (756)
Q Consensus 68 Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l----L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i~e-~l~ 137 (756)
|.-++++.+-.+..-+--.+.+++-....-.+ +-...+...+..++-.+||.|..++.++.+-+ ++. --.
T Consensus 90 vl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~kiA~sGaL 169 (550)
T KOG4224|consen 90 VLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKVKIARSGAL 169 (550)
T ss_pred HHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchhhhhhccch
Confidence 44577888888888888888888755444211 22334666777888899999999999986543 221 123
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhcC--CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHH
Q 004394 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISA--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (756)
Q Consensus 138 ~~v~~~L~d~~pyVRKkAalal~kl~~~~p--~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~ 215 (756)
.++.++-+.++--||+.|.-++..+-+... ......+-++.|.++ +...|+.|..-|..++..|.-... .+
T Consensus 170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsl-l~s~d~dvqyycttaisnIaVd~~------~R 242 (550)
T KOG4224|consen 170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSL-LKSGDLDVQYYCTTAISNIAVDRR------AR 242 (550)
T ss_pred hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhh-hccCChhHHHHHHHHhhhhhhhHH------HH
Confidence 456667788899999999888887765432 223356778888897 699999999999999988864321 11
Q ss_pred HHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHH-----HHHHHHHhcccchHHHHHHHHHHHhhc-
Q 004394 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLT- 289 (756)
Q Consensus 216 ~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~i-----l~~l~~~L~~~n~aVvleaik~ii~l~- 289 (756)
.+...-.+..+..|...+.+.++-.+|..=-.|+.+..+.+ -...+ +..+..+||+..--.+++.+-||-.+.
T Consensus 243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~-Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisi 321 (550)
T KOG4224|consen 243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTE-YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISI 321 (550)
T ss_pred HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccch-hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhccc
Confidence 11111223356777777788888888877777766654332 22222 345667788877667788888884443
Q ss_pred -cccchh-HHHHHHHHHHHHHHhhcCCCcc-hHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhc
Q 004394 290 -LSMTDV-HQQVYERIKAPLLTLVSSGSPE-QSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVA 366 (756)
Q Consensus 290 -~~~~~~-~~~~l~rl~~~L~~LLss~~~n-irYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~ 366 (756)
+-.+.+ .. ...-.||+++|.-+++| +|..+...+.-++..+-+ ..+.|+
T Consensus 322 hplNe~lI~d---agfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~----n~~~i~--------------------- 373 (550)
T KOG4224|consen 322 HPLNEVLIAD---AGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEH----NVSVIR--------------------- 373 (550)
T ss_pred ccCcccceec---ccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhh----hhHHHh---------------------
Confidence 322211 11 11235799999877776 888887777766643210 011111
Q ss_pred CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcC
Q 004394 367 NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (756)
Q Consensus 367 n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~ 405 (756)
++++ ++.|.+.+.+...+|+.++.-+|+.+|..-.
T Consensus 374 -esgA---i~kl~eL~lD~pvsvqseisac~a~Lal~d~ 408 (550)
T KOG4224|consen 374 -ESGA---IPKLIELLLDGPVSVQSEISACIAQLALNDN 408 (550)
T ss_pred -hcCc---hHHHHHHHhcCChhHHHHHHHHHHHHHhccc
Confidence 2222 4566777889999999999999999987643
No 46
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=97.51 E-value=0.015 Score=63.79 Aligned_cols=94 Identities=27% Similarity=0.199 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHH
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~ 178 (756)
...+..+.+.+.++++.+|..|...++.++..+.+ +.+.+.+.|.++.||..|+.++.++-. +.-.+.
T Consensus 42 ~~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~av----~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a~~~ 109 (335)
T COG1413 42 PEAADELLKLLEDEDLLVRLSAAVALGELGSEEAV----PLLRELLSDEDPRVRDAAADALGELGD--------PEAVPP 109 (335)
T ss_pred hhhHHHHHHHHcCCCHHHHHHHHHHHhhhchHHHH----HHHHHHhcCCCHHHHHHHHHHHHccCC--------hhHHHH
Confidence 34678899999999999999999999999888754 468889999999999999998876643 334566
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
+..++.+|.|..|..+|..+|..+..
T Consensus 110 li~~l~~d~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 110 LVELLENDENEGVRAAAARALGKLGD 135 (335)
T ss_pred HHHHHHcCCcHhHHHHHHHHHHhcCc
Confidence 66764448999999999999999854
No 47
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.5 Score=58.34 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=116.3
Q ss_pred HHHhcCCCccchhhhhhhhccCCC-----hhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC
Q 004394 53 SYMTIGIDVSAVFGEMVMCSATSD-----IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL 127 (756)
Q Consensus 53 ~~~~lG~Dvs~lF~~Vi~l~~s~d-----~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I 127 (756)
.++..-|....++..+++-+.+.. -..+|.+=.++..++..-|.+++--.+.|..=+.+.+..+|+.-+..++++
T Consensus 260 ~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~ 339 (1251)
T KOG0414|consen 260 TLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANL 339 (1251)
T ss_pred HHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 344445656778888887666544 445788889999999989999888888888878888999999999999886
Q ss_pred Chhh------------hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc-CCCchHHHHHhHhcCCChhHHHH
Q 004394 128 RVAN------------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-DADFPPTLKHLMLNDPDPQVVAN 194 (756)
Q Consensus 128 ~~~e------------i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~-~~~~i~~L~~lLL~D~d~~Vv~~ 194 (756)
...+ +-..+...+..-+.|-++|||-++.-...|+++....-.. ..++....... +.|++..|.-+
T Consensus 340 V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p~~~~~eV~~la~gr-l~DkSslVRk~ 418 (1251)
T KOG0414|consen 340 VASELRDEELEEMSKSLRDELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIPLGSRTEVLELAIGR-LEDKSSLVRKN 418 (1251)
T ss_pred HHHHhcchhhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCCccHHHHHHHHHhcc-cccccHHHHHH
Confidence 3322 2233667778888999999999999999999986543320 12223333344 57999999999
Q ss_pred HHHHHHHHHhhcc
Q 004394 195 CLSALQEIWSLEA 207 (756)
Q Consensus 195 Al~aL~eI~~~~~ 207 (756)
|+.++..+..++|
T Consensus 419 Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 419 AIQLLSSLLDRHP 431 (1251)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988777
No 48
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.016 Score=65.86 Aligned_cols=287 Identities=16% Similarity=0.145 Sum_probs=182.3
Q ss_pred HHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC----hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 004394 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (756)
Q Consensus 86 yl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~----~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~k 161 (756)
|...+.++|++........+.-=+.|.=+++.--|-|.+|.+. .++..+..+..++..|+.++.-.|=.|.--+-+
T Consensus 250 ~~~~ll~~n~q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~ 329 (898)
T COG5240 250 ATVELLKENSQALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQ 329 (898)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4444556677765544544444566767888888888888854 356777788888888998888888888888888
Q ss_pred HhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHH----hccCC
Q 004394 162 LYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR----IKEFS 237 (756)
Q Consensus 162 l~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~----l~~~~ 237 (756)
+-..+|+.+ .---..+.++ .+|.|-.+..-|+..|..-.. + ..+.+|++. +.+.+
T Consensus 330 lam~~P~kv--~vcN~evEsL-Isd~Nr~IstyAITtLLKTGt---~---------------e~idrLv~~I~sfvhD~S 388 (898)
T COG5240 330 LAMKYPQKV--SVCNKEVESL-ISDENRTISTYAITTLLKTGT---E---------------ETIDRLVNLIPSFVHDMS 388 (898)
T ss_pred HHhhCCcee--eecChhHHHH-hhcccccchHHHHHHHHHcCc---h---------------hhHHHHHHHHHHHHHhhc
Confidence 999999987 3445678887 699998887777766654321 1 123444443 44555
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccc-hHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCc
Q 004394 238 EWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP 316 (756)
Q Consensus 238 ~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n-~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~ 316 (756)
.-..+.+++.++.++-.=+++...+++.+...|...+ --.--.++.+|..+..+.++.+ +|+-.-|.+|+.+ -
T Consensus 389 D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~sk----EraLe~LC~fIED--c 462 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSK----ERALEVLCTFIED--C 462 (898)
T ss_pred cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHH----HHHHHHHHHHHhh--c
Confidence 5556666666666654444566678888877665533 2333334444444443444444 3444557788874 4
Q ss_pred chHHHHHHHHHHHHhhCCccccc--ccceee---ecCCCCHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHhhhCCH
Q 004394 317 EQSYAVLSHLHILVMRAPFIFAS--DYKHFY---CQYNEPSYVKKLKLEMLTAVA----NESNTYEIVTELCEYAANVDI 387 (756)
Q Consensus 317 nirYvaL~~l~~L~~~~p~lf~~--~~~~f~---c~~~dp~~IK~~kLdIL~~L~----n~~Nv~~Iv~EL~~Yl~~~D~ 387 (756)
+-.-++++.+..|....|..=.+ +++++| .+.| ..||.-++.-|.+.+ +.---+.|..-|...+.+.|.
T Consensus 463 ey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN--~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~Dd 540 (898)
T COG5240 463 EYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILEN--NIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDD 540 (898)
T ss_pred chhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhh--hHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccH
Confidence 56667888888887766643222 222232 2223 358888888885543 222334455566778888888
Q ss_pred HHHHHHHHHHHHHH
Q 004394 388 PIARESIRAVGKIA 401 (756)
Q Consensus 388 ~~~~~~I~aIg~lA 401 (756)
+++..+..++..+-
T Consensus 541 eVRdrAsf~l~~~~ 554 (898)
T COG5240 541 EVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhhh
Confidence 88877766655443
No 49
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.45 E-value=0.013 Score=66.18 Aligned_cols=256 Identities=15% Similarity=0.069 Sum_probs=161.3
Q ss_pred ChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhH
Q 004394 113 DPMIRGLALRSLCSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV 191 (756)
Q Consensus 113 Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~V 191 (756)
++-+++- |..|.-++ +.. .+.+...| .|.++-|+..|++++.... . +..++.|.+. +.|.+++|
T Consensus 38 deRL~Ah-LdgL~~~G-~~a----~~~L~~aL~~d~~~ev~~~aa~al~~~~---~-----~~~~~~L~~~-L~d~~~~v 102 (410)
T TIGR02270 38 EERLLAH-VDGLVLAG-KAA----TELLVSALAEADEPGRVACAALALLAQE---D-----ALDLRSVLAV-LQAGPEGL 102 (410)
T ss_pred HHHHHHH-HHHHHHhh-HhH----HHHHHHHHhhCCChhHHHHHHHHHhccC---C-----hHHHHHHHHH-hcCCCHHH
Confidence 3334443 55555555 333 44455556 4788899888777764221 1 2236778887 58999999
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc
Q 004394 192 VANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ 271 (756)
Q Consensus 192 v~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~ 271 (756)
..++..+|.+|.. ......|+..+.+.+|+.+..++..+..-... -.+.+.+.|+
T Consensus 103 r~aaa~ALg~i~~------------------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~~-------~~~~L~~~L~ 157 (410)
T TIGR02270 103 CAGIQAALGWLGG------------------RQAEPWLEPLLAASEPPGRAIGLAALGAHRHD-------PGPALEAALT 157 (410)
T ss_pred HHHHHHHHhcCCc------------------hHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------hHHHHHHHhc
Confidence 9999999988742 12345677777888999998888888774321 2356778888
Q ss_pred ccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCC
Q 004394 272 HANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEP 351 (756)
Q Consensus 272 ~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp 351 (756)
+.++.|.-+|++++..+.... ..+.|...+.+.++++|..++..+..+-. +.... .+..|+-..+
T Consensus 158 d~d~~Vra~A~raLG~l~~~~----------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~~-~l~~~~~~~g-- 222 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRRL----------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAWG-VCRRFQVLEG-- 222 (410)
T ss_pred CCCHHHHHHHHHHHHhhcccc----------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHHH-HHHHHHhccC--
Confidence 999999999999998876421 23345667888999999999999866632 22211 1111222222
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHH
Q 004394 352 SYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALV 431 (756)
Q Consensus 352 ~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~ 431 (756)
.+.+.. +-.+..+.... .++.-|.+.+.+.+ .++.++.++|.+..- ..+..+++.++. +++..-+-.
T Consensus 223 ~~~~~~-l~~~lal~~~~---~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p-----~av~~L~~~l~d--~~~aR~A~e 289 (410)
T TIGR02270 223 GPHRQR-LLVLLAVAGGP---DAQAWLRELLQAAA--TRREALRAVGLVGDV-----EAAPWCLEAMRE--PPWARLAGE 289 (410)
T ss_pred ccHHHH-HHHHHHhCCch---hHHHHHHHHhcChh--hHHHHHHHHHHcCCc-----chHHHHHHHhcC--cHHHHHHHH
Confidence 233333 33344443222 67777777776644 788999999977533 355667776654 234444444
Q ss_pred HHHHH
Q 004394 432 LVKDL 436 (756)
Q Consensus 432 ~i~~I 436 (756)
.+..|
T Consensus 290 A~~~I 294 (410)
T TIGR02270 290 AFSLI 294 (410)
T ss_pred HHHHh
Confidence 44444
No 50
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.43 E-value=0.052 Score=65.00 Aligned_cols=304 Identities=16% Similarity=0.141 Sum_probs=179.0
Q ss_pred ChHHHHHHHHHHHHcCC--CChHHHHHHHHHHhcCChh---hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc
Q 004394 95 PDLALLTINFLQRDCKD--EDPMIRGLALRSLCSLRVA---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT 169 (756)
Q Consensus 95 ~el~lL~iNtl~KDL~s--~Np~iR~LALrtLs~I~~~---ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~ 169 (756)
|+..--.+-.+.+|+++ .|.-+|-+|+-++|.++-. .-...+..-+.+++++++..||++|+.|+..+---+
T Consensus 812 ~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn--- 888 (1233)
T KOG1824|consen 812 PQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN--- 888 (1233)
T ss_pred cccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc---
Confidence 34344445677888884 5789999999999998642 223445567889999999999999999999876522
Q ss_pred ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc-ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHH
Q 004394 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (756)
Q Consensus 170 ~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~-~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL 248 (756)
. ++|++.+.+.+ +.+|-=..--+..|-|+.... .....+...++|.+ |.+......+...-.+=++|
T Consensus 889 l--~~yLpfil~qi--~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~l--------L~k~cE~~eegtR~vvAECL 956 (1233)
T KOG1824|consen 889 L--PKYLPFILEQI--ESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWAL--------LFKHCECAEEGTRNVVAECL 956 (1233)
T ss_pred h--HhHHHHHHHHH--hcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHH--------HHHhcccchhhhHHHHHHHh
Confidence 1 45666666643 444444444455566654322 11111112222221 11122223455677777888
Q ss_pred HhhCCCChhHHHHHHHHHHHHhcccch---HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHH
Q 004394 249 AKYVPLDSNEIFDIMNLLEDRLQHANG---AVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSH 325 (756)
Q Consensus 249 ~~y~p~d~~e~~~il~~l~~~L~~~n~---aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~ 325 (756)
++++-.+++ .++..+...+++..+ +.+..|+|.-+...+..-+ .++++-..-...++.++|.++|-++|..
T Consensus 957 GkL~l~epe---sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id---~~lk~~ig~fl~~~~dpDl~VrrvaLvv 1030 (1233)
T KOG1824|consen 957 GKLVLIEPE---SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPID---PLLKQQIGDFLKLLRDPDLEVRRVALVV 1030 (1233)
T ss_pred hhHHhCChH---HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccC---HHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 888766654 466777777766543 4566666655543332111 2223333345567788999999999999
Q ss_pred HHHHHhhCCccccc-----------------------ccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 004394 326 LHILVMRAPFIFAS-----------------------DYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA 382 (756)
Q Consensus 326 l~~L~~~~p~lf~~-----------------------~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl 382 (756)
++..+...|.++.. ++.-|----||-.-+|+.+-|-+|.|.+.-==..=+.+++.++
T Consensus 1031 ~nSaahNKpslIrDllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscld~~dit~Fl~~~ 1110 (1233)
T KOG1824|consen 1031 LNSAAHNKPSLIRDLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCLDRLDITEFLNHV 1110 (1233)
T ss_pred HHHHHccCHhHHHHHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 99998887754321 1112333346778899999999999864321111122333333
Q ss_pred hh--CC-HHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHhh
Q 004394 383 AN--VD-IPIARESIRAVGKIALQQYDV-NAIVDRLLQFLE 419 (756)
Q Consensus 383 ~~--~D-~~~~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~ 419 (756)
.+ .| .+++--.-..+.++|..-|+. -.-+|++++=|.
T Consensus 1111 ~~GL~DhydiKmlt~l~l~rLa~lcPs~VlqrlD~l~EpLr 1151 (1233)
T KOG1824|consen 1111 EDGLEDHYDIKMLTFLMLARLADLCPSAVLQRLDRLVEPLR 1151 (1233)
T ss_pred HhhcchhhHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence 32 22 344444444556777776653 345566665544
No 51
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.43 E-value=0.01 Score=62.75 Aligned_cols=230 Identities=18% Similarity=0.221 Sum_probs=140.5
Q ss_pred HHHHhhcC-CCChHHHHHHHHHHHHHh--hhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHH
Q 004394 138 GPLGLGLK-DNNSYVRTVAVIGVLKLY--HISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (756)
Q Consensus 138 ~~v~~~L~-d~~pyVRKkAalal~kl~--~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~ 214 (756)
..+..+|. ..+|+++.+|..++...- ..+.+.+.+-+-++.+.++ ++++++.|.-.|+.+|..+......
T Consensus 15 ~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~l-L~~p~~~vr~~AL~aL~Nls~~~en------ 87 (254)
T PF04826_consen 15 QKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSL-LNDPNPSVREKALNALNNLSVNDEN------ 87 (254)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHH-cCCCChHHHHHHHHHHHhcCCChhh------
Confidence 33445555 568999999988887753 3444555567788999997 7999999999999999877543211
Q ss_pred HHHHhhccHHHHHHHHHHhcc--CChhHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcc
Q 004394 215 REREALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (756)
Q Consensus 215 ~~~~~ll~~~~~~~Ll~~l~~--~~~W~Qi~IL~lL~~y~p~d~--~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~ 290 (756)
...+ +.++.++|..+.. .+.-.|..-|++|....-.+. ......+..+..+|.+.|.-+...+.|+++++..
T Consensus 88 ---~~~I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 88 ---QEQI-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred ---HHHH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 1112 3456777775443 366799999999999865432 2233455666778888888999999999999986
Q ss_pred ccchhHHHHH-HHHHHHHHHhhcCC-CcchHHHHHHHHHHHHhhCCcccccccceee-ecCCCCHHHHHHHHHHHHHhcC
Q 004394 291 SMTDVHQQVY-ERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFY-CQYNEPSYVKKLKLEMLTAVAN 367 (756)
Q Consensus 291 ~~~~~~~~~l-~rl~~~L~~LLss~-~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~-c~~~dp~~IK~~kLdIL~~L~n 367 (756)
+. +....++ .+.-..++.|++++ +.++-.-+|..+.-|.... .+.-..|. -.++.+ =|+.+..
T Consensus 164 np-~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~----~~~~~~~~~~~~~~~---------~L~~~~~ 229 (254)
T PF04826_consen 164 NP-DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI----KKEAYVFVQDDFSED---------SLFSLFG 229 (254)
T ss_pred CH-HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh----CcccceeccccCCch---------hHHHHHc
Confidence 53 3323333 23334567777654 3454544554444443211 11100110 111211 1222322
Q ss_pred CCCHHHHHHHHHHHhhhCCHHHHHHHH
Q 004394 368 ESNTYEIVTELCEYAANVDIPIARESI 394 (756)
Q Consensus 368 ~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I 394 (756)
+ .+...++|..-+...|+|++.++|
T Consensus 230 e--~~~~~~~l~~l~~h~d~ev~~~v~ 254 (254)
T PF04826_consen 230 E--SSQLAKKLQALANHPDPEVKEQVI 254 (254)
T ss_pred c--HHHHHHHHHHHHcCCCHHHhhhcC
Confidence 2 346667777777778888877653
No 52
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.26 E-value=0.075 Score=63.74 Aligned_cols=364 Identities=17% Similarity=0.250 Sum_probs=206.3
Q ss_pred HHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC--
Q 004394 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-- 254 (756)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~-- 254 (756)
+++..+ +..++. ++..|+.+|..++.... .. .....+.++..|++.|..-++=..+..+.+|.++.-.
T Consensus 253 kk~~~l-~~kQeq-Llrv~~~lLlNLAed~~-ve-------~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E 322 (708)
T PF05804_consen 253 KKLQTL-IRKQEQ-LLRVAFYLLLNLAEDPR-VE-------LKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE 322 (708)
T ss_pred HHHHHH-HHHHHH-HHHHHHHHHHHHhcChH-HH-------HHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH
Confidence 345554 455554 56677888988876322 11 1123344566677777777887888888999887533
Q ss_pred ChhHH--HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 255 DSNEI--FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 255 d~~e~--~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
+.++. ..+++.+..++++.+.-++-.|+++++++.-. ++++.++++ .+.+.|+.||. +++.+.+++..+..|..
T Consensus 323 NK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~--d~~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 323 NKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK--DPNFREVALKILYNLSM 399 (708)
T ss_pred HHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC--CCchHHHHHHHHHHhcc
Confidence 22222 34778888999998988999999999998754 344444332 35577888997 46788889998888876
Q ss_pred hCC--ccccc-cc-cee-e-ecCCCCHHHHHHHHHHHHHhc-CCCCHHHHHH-----HHHHHhhhCCHHHHHHHHHHHHH
Q 004394 332 RAP--FIFAS-DY-KHF-Y-CQYNEPSYVKKLKLEMLTAVA-NESNTYEIVT-----ELCEYAANVDIPIARESIRAVGK 399 (756)
Q Consensus 332 ~~p--~lf~~-~~-~~f-~-c~~~dp~~IK~~kLdIL~~L~-n~~Nv~~Iv~-----EL~~Yl~~~D~~~~~~~I~aIg~ 399 (756)
... ..|.. +. ..+ - ...+...-+....+.+++.|+ ++.|++.+++ .|++.+...-..+--++||.|
T Consensus 400 dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNi-- 477 (708)
T PF05804_consen 400 DDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNI-- 477 (708)
T ss_pred CHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHH--
Confidence 422 12221 11 100 0 112233345566677777766 5578776654 344443332222222344444
Q ss_pred HHhhcCCh----hHHHHHHHHHhhhc-CchhhHHHHHHHHHHHhhCCCcch-----HHHHHHHHhhhccCCchhHHHHHH
Q 004394 400 IALQQYDV----NAIVDRLLQFLEME-KDYVTAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALI 469 (756)
Q Consensus 400 lA~k~~~~----~~~vd~Ll~LL~~~-~~~v~~E~i~~i~~Il~~~p~~~~-----~~~~~l~~l~~~~i~~p~ak~a~i 469 (756)
+..-+.. ..||.-+++++..+ .+.+.-|++-.+.++-....++.. ..+..+.+++.....+++..--++
T Consensus 478 -S~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~V 556 (708)
T PF05804_consen 478 -SQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVV 556 (708)
T ss_pred -HhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHH
Confidence 4332222 23555555666543 334555555555555432223322 123344444433344455544445
Q ss_pred hHhccCCCCCCChH-----HHHHHHhhhhc--cCChHHHHHHHHHHhhHhhhcCChhhHH-------HHHHHHHhhhcCC
Q 004394 470 WMLGEYSQDMQDAP-----YILESLTENWE--EEPSAEVRLHLLTAVMKCFFKRPPETQK-------VLGAALAAGLADF 535 (756)
Q Consensus 470 WiLGEy~~~i~~~~-----~iL~~l~~~f~--~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~-------~l~~vL~~~~~d~ 535 (756)
-++|--+..-.-+. .+++.+++-+. .|+ .+.-+|++-++-++..+.+ +++ ...++++. ..|.
T Consensus 557 i~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeD-dE~VlQil~~f~~ll~h~~--tr~~ll~~~~~~~ylidL-~~d~ 632 (708)
T PF05804_consen 557 ILLGTLASDPECAPLLAKSGLIPTLIELLNAKQED-DEIVLQILYVFYQLLFHEE--TREVLLKETEIPAYLIDL-MHDK 632 (708)
T ss_pred HHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCch-HHHHHHHHHHHHHHHcChH--HHHHHHhccchHHHHHHH-hcCC
Confidence 56665443221121 12333333332 345 8889999999999876643 332 23344443 4688
Q ss_pred ChHHHhHHHHHHHHhc-CCHHHHHhh
Q 004394 536 HQDVHDRALFYHRLLQ-YNVSVAERV 560 (756)
Q Consensus 536 d~dVrdRA~~Y~rLL~-~~~e~a~~v 560 (756)
|++||.=|-.-.-++. .+.+-+++|
T Consensus 633 N~~ir~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 633 NAEIRKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 9999998888776655 566666664
No 53
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.24 E-value=0.33 Score=57.31 Aligned_cols=450 Identities=15% Similarity=0.183 Sum_probs=240.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCCc-----cc-hhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCC
Q 004394 40 IDDSKRELFKKVISYMTIGIDV-----SA-VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDED 113 (756)
Q Consensus 40 ~~~~kk~~lkKlI~~~~lG~Dv-----s~-lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~N 113 (756)
|.+-+..++.-+.-+|++-|+. -. +|..-+..|.|++-+++-.+--||++..++.-|+++-.--...+++.
T Consensus 230 d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~--- 306 (859)
T KOG1241|consen 230 DEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP--- 306 (859)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---
Confidence 3345666677777777766642 22 45555677788888888888888888888877877766666666665
Q ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHhhcC-------CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcC
Q 004394 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLK-------DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND 186 (756)
Q Consensus 114 p~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~-------d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D 186 (756)
|.-...|..++ +.+.|.+.++|. |.++.+-|.|-.|+.-+-+...+.+. +...+-+++- +..
T Consensus 307 p~~~~fa~~a~---------~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv-~~Vl~Fiee~-i~~ 375 (859)
T KOG1241|consen 307 PSSKYFARQAL---------QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV-PHVLPFIEEN-IQN 375 (859)
T ss_pred chhhHHHHHHH---------hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch-hhhHHHHHHh-cCC
Confidence 22222333332 345555555553 23457777777777655555544442 3344555554 466
Q ss_pred CChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh-------ccCChhHHHHHHHHHHhhCCCChhHH
Q 004394 187 PDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-------KEFSEWAQCLVLELVAKYVPLDSNEI 259 (756)
Q Consensus 187 ~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l-------~~~~~W~Qi~IL~lL~~y~p~d~~e~ 259 (756)
+|-.=.-+|+.++..|.. .|. ++...-+-.+.+..+++.. .+..+|.--+|.+.+..-+ .+....
T Consensus 376 pdwr~reaavmAFGSIl~-gp~------~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~-~n~~~l 447 (859)
T KOG1241|consen 376 PDWRNREAAVMAFGSILE-GPE------PDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAI-INQELL 447 (859)
T ss_pred cchhhhhHHHHHHHhhhc-CCc------hhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhc-ccHhhh
Confidence 777777778888877754 222 1111111112333344432 3567888888888877332 122222
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhc-------ccc--chhHHHHHHHHHHHHHHhh---cCCCcchHHHHHHHHH
Q 004394 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLT-------LSM--TDVHQQVYERIKAPLLTLV---SSGSPEQSYAVLSHLH 327 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~ii~l~-------~~~--~~~~~~~l~rl~~~L~~LL---ss~~~nirYvaL~~l~ 327 (756)
..++..+..-| +..+-|.-.|.+.|+.+. .+. .+.....++-+.+.|+.-- +.++.|+|-.+.++|.
T Consensus 448 ~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALm 526 (859)
T KOG1241|consen 448 QSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALM 526 (859)
T ss_pred hHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHH
Confidence 23344444444 234556666666666543 111 1111123444555454432 2367899999999999
Q ss_pred HHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHhhhCC-HHHHHHHHHHHHHHHhhcC
Q 004394 328 ILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVT-ELCEYAANVD-IPIARESIRAVGKIALQQY 405 (756)
Q Consensus 328 ~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~-EL~~Yl~~~D-~~~~~~~I~aIg~lA~k~~ 405 (756)
.|+...|+-+.+ .+....+-++.+| .+.+. +.+.|..... .++..-+...++.+-.|.+
T Consensus 527 ElIk~st~~vy~-------------~v~~~~l~il~kl------~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 527 ELIKNSTDDVYP-------------MVQKLTLVILEKL------DQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred HHHHcCcHHHHH-------------HHHHHHHHHHHHH------HHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 999887753221 2333333333333 11111 1111211000 1233344455555555553
Q ss_pred -Chh----HHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhh---ccCCchhHHHHHHhHhccCC
Q 004394 406 -DVN----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISS---QNVQEPKAKAALIWMLGEYS 476 (756)
Q Consensus 406 -~~~----~~vd~Ll~LL~~~~~-~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~---~~i~~p~ak~a~iWiLGEy~ 476 (756)
+.. ..+.-++++++.+.+ .+.+|+.-.+--++..-...+......+..++. .+.++-.+..+++=++|.-+
T Consensus 588 ~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~ 667 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLA 667 (859)
T ss_pred ccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 333 344455556666444 455555544444433222222211222222211 35667778888888888876
Q ss_pred CCCCC-----hHHHHHHHhhhhccC--ChHHHHHHHHHHhhHhhhcCChhhHHHH---HHHHHhhh
Q 004394 477 QDMQD-----APYILESLTENWEEE--PSAEVRLHLLTAVMKCFFKRPPETQKVL---GAALAAGL 532 (756)
Q Consensus 477 ~~i~~-----~~~iL~~l~~~f~~e--~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l---~~vL~~~~ 532 (756)
.-.++ ..++...+++....+ + ..||-++|+.+.-+.+--....++.+ ..+|+.+.
T Consensus 668 raL~~~i~py~d~~mt~Lvq~Lss~~~h-R~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as 732 (859)
T KOG1241|consen 668 RALEDDILPYCDELMTVLVQCLSSPNLH-RNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQAS 732 (859)
T ss_pred HHHHhhhhhHHHHHHHHHHHHccCcccc-ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 55432 556777777776553 4 67899999999988775543344333 34455443
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.21 E-value=0.0012 Score=60.02 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=77.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH
Q 004394 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 136 l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
+++.+.+.+.|.++++|+.|+.|+..+...+|+.. .+.+.++.+.++ ++|+|+.|+.+|+.+|..+....+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~--- 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL-LKSEDEEVVKAALWALRNLAAGPEDN--- 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH-HhCCCHHHHHHHHHHHHHHccCcHHH---
Confidence 67778888899999999999999999997655433 345788999997 68999999999999999998754321
Q ss_pred HHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y 251 (756)
.. .......+..|+..+.+.+...+-..+.+|..+
T Consensus 84 --~~--~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 84 --KL--IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred --HH--HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 11 111122455566666666666666666666543
No 55
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.19 E-value=0.002 Score=78.11 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=112.2
Q ss_pred cchhhhhhhhc----cCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhcC--ChhhhHH
Q 004394 62 SAVFGEMVMCS----ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLVE 134 (756)
Q Consensus 62 s~lF~~Vi~l~----~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~-s~Np~iR~LALrtLs~I--~~~ei~e 134 (756)
+.+-|-|++.+ ..+|.++..-++|++..+.--..+.+--.-..|..=+. ++||.||+.+.-++|.+ +-|.+++
T Consensus 918 g~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 918 GRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence 44445555655 34668889999999988766555554444455555554 89999999999999986 6799999
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
...+.+-+-|.|.++.|||+|++.+.++...+- +.-.+.+..+..+ +.|+|+.+..-|=..+.|+..+.
T Consensus 998 ~~T~~Ly~rL~D~~~~vRkta~lvlshLILndm--iKVKGql~eMA~c-l~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 998 PWTEHLYRRLRDESPSVRKTALLVLSHLILNDM--IKVKGQLSEMALC-LEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh--hHhcccHHHHHHH-hcCCcHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999887643 3336777777777 69999999988888999997654
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.08 E-value=0.0025 Score=65.80 Aligned_cols=184 Identities=18% Similarity=0.148 Sum_probs=105.9
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC--CCccchhhhh--------hhhccCCChhhHHHHHHHHHH
Q 004394 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG--IDVSAVFGEM--------VMCSATSDIVLKKMCYLYVGN 89 (756)
Q Consensus 20 ~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG--~Dvs~lF~~V--------i~l~~s~d~~~KkL~YLyl~~ 89 (756)
.|++++.+.|.+-.. ..+=++|.+++.++-.+...| .+-..-|.+. ++.+.+.+-.+=+-+...+..
T Consensus 3 ~~~~~~~~~l~~~~~---~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~ 79 (228)
T PF12348_consen 3 YEFEEILAALEKKES---ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSD 79 (228)
T ss_dssp ---GGS-TTHHHHHT----SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHH
T ss_pred chHHHHHHHHhccCC---ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355566666633111 133467899999998888877 2222222222 234444443333444444443
Q ss_pred cccc----CChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-hHHHH-HHHHHhhcCCCChHHHHHHHHHHHHHh
Q 004394 90 YAKV----NPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-LVEYL-VGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (756)
Q Consensus 90 ~~~~----~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-i~e~l-~~~v~~~L~d~~pyVRKkAalal~kl~ 163 (756)
++.. -...+-..++.+.+=+.+++..+|..|-.+|..|...- +...+ .+.+..++.|++|-||..++.++..+.
T Consensus 80 l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 80 LARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3321 11234567899999999999999998888777763322 12333 778888999999999999999999999
Q ss_pred hhcC---CcccC----CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 164 HISA---PTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 164 ~~~p---~~~~~----~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
...+ ..+.. +.+.+.+..+ +.|.|+.|..+|-.++..+.+.-|
T Consensus 160 ~~~~~~~~~l~~~~~~~~l~~~l~~~-l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 160 EKWGSDSSVLQKSAFLKQLVKALVKL-LSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp TT-----GGG--HHHHHHHHHHHHHH-HTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHccchHhhhcccchHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHCC
Confidence 9888 33322 2356677776 699999999999999988866433
No 57
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.06 E-value=0.0014 Score=59.52 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=80.7
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChh------hhHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---c
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVA------NLVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---C 170 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~------ei~e-~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~ 170 (756)
.++.+.+=+.+.|+.+|.-|+.+++++... .+.+ .+++.+.+++.|+++.||+.|+.++..+....+.. +
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 456677777788899999999999988652 2333 66778888999999999999999999998766432 2
Q ss_pred cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 171 ~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
.+.++++.+.++ +++.|..+...|+.+|..++
T Consensus 88 ~~~g~l~~l~~~-l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNL-LDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHH-HhcCCHHHHHHHHHHHHHhh
Confidence 346788999997 58889999999998887764
No 58
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.11 Score=61.38 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=29.8
Q ss_pred cchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc
Q 004394 273 ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 273 ~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
.+...+-++||++..+....++- .+++..|+-++..+-.-+---+...+..+..++|+
T Consensus 362 vD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~ 419 (734)
T KOG1061|consen 362 VDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPN 419 (734)
T ss_pred hCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCC
Confidence 35567888888888776432211 34555566666533222222233344444555554
No 59
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.03 E-value=0.024 Score=56.68 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHH
Q 004394 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIY 227 (756)
Q Consensus 148 ~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~ 227 (756)
+|-||..|+.++.-+...+|..+ +.|.+.+..+ |+|+|+.|..+|+.+|..+...+.- ....+.+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v--e~~~~~l~~~-L~D~~~~VR~~al~~Ls~Li~~d~i-----------k~k~~l~~ 66 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV--EPYLPNLYKC-LRDEDPLVRKTALLVLSHLILEDMI-----------KVKGQLFS 66 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH--HhHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHcCce-----------eehhhhhH
Confidence 58899999999999999999998 7799999998 6999999999999999998764431 11123457
Q ss_pred HHHHHhccCChhHHHHHHHHHHhhCCC
Q 004394 228 YLLNRIKEFSEWAQCLVLELVAKYVPL 254 (756)
Q Consensus 228 ~Ll~~l~~~~~W~Qi~IL~lL~~y~p~ 254 (756)
+++..+.+.++..+-..-.++..+...
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 888888899998888887777776543
No 60
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.44 Score=55.25 Aligned_cols=297 Identities=14% Similarity=0.092 Sum_probs=155.7
Q ss_pred cCCCccchhhhhhhhccCCChhhHH-HHHHHHHHccccCC---hHHHHHHHHHHHHcCCCChHHH----HHHHHHHhc--
Q 004394 57 IGIDVSAVFGEMVMCSATSDIVLKK-MCYLYVGNYAKVNP---DLALLTINFLQRDCKDEDPMIR----GLALRSLCS-- 126 (756)
Q Consensus 57 lG~Dvs~lF~~Vi~l~~s~d~~~Kk-L~YLyl~~~~~~~~---el~lL~iNtl~KDL~s~Np~iR----~LALrtLs~-- 126 (756)
.|++.+.+...+.+++.+.++..++ ..|-.+. +.+.+. +.-...+.++.+-..|.|+..| ++|..+.+.
T Consensus 128 ~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag-~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~L 206 (569)
T KOG1242|consen 128 KGLSGEYVLELLLELLTSTKIAERAGAAYGLAG-LVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNL 206 (569)
T ss_pred hccCHHHHHHHHHHHhccccHHHHhhhhHHHHH-HHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhc
Confidence 4666666677777888877776533 2222222 111111 1112334555555555544333 344333332
Q ss_pred --CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 127 --LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 127 --I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
-..|-+ -.+.|.|..+..|..++||..|..|+--+-+. .+..+ ..+.+.+..-|..+ .-.-..+++.++.-+.
T Consensus 207 g~~~EPyi-v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV--K~llpsll~~l~~~-kWrtK~aslellg~m~ 282 (569)
T KOG1242|consen 207 GPPFEPYI-VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV--KLLLPSLLGSLLEA-KWRTKMASLELLGAMA 282 (569)
T ss_pred CCCCCchH-HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh--hHhhhhhHHHHHHH-hhhhHHHHHHHHHHHH
Confidence 233433 34567788888999999999999888776653 44454 33444333333444 2233344444444333
Q ss_pred hhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHhcccchHHHHHHH
Q 004394 204 SLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTI 282 (756)
Q Consensus 204 ~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~-d~~e~~~il~~l~~~L~~~n~aVvleai 282 (756)
...|. ..+.| -+.++..+...+.+..+=.+-.-.+.+.+|+.. +..+...+++.+.+.+.+.+.- +-+|+
T Consensus 283 ~~ap~-qLs~~-------lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~-~~e~~ 353 (569)
T KOG1242|consen 283 DCAPK-QLSLC-------LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCY-TPECL 353 (569)
T ss_pred HhchH-HHHHH-------HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccc-hHHHH
Confidence 32221 11111 234566677777777777777777777777532 3345777778887777766521 23444
Q ss_pred HHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHH-
Q 004394 283 KVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEM- 361 (756)
Q Consensus 283 k~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdI- 361 (756)
..+..-+- -..+...-+..+++.|.+=+..++. .+|+.+..|
T Consensus 354 ~~L~~ttF-V~~V~~psLalmvpiL~R~l~eRst------------------------------------~~kr~t~~Ii 396 (569)
T KOG1242|consen 354 DSLGATTF-VAEVDAPSLALMVPILKRGLAERST------------------------------------SIKRKTAIII 396 (569)
T ss_pred Hhhcceee-eeeecchhHHHHHHHHHHHHhhccc------------------------------------hhhhhHHHHH
Confidence 44332110 0001011122333333333333333 344444333
Q ss_pred --HHHhc-CCCCHHHHHH----HHHHHhhhCCHHHHHHHHHHHHHHHhhc
Q 004394 362 --LTAVA-NESNTYEIVT----ELCEYAANVDIPIARESIRAVGKIALQQ 404 (756)
Q Consensus 362 --L~~L~-n~~Nv~~Iv~----EL~~Yl~~~D~~~~~~~I~aIg~lA~k~ 404 (756)
++.++ |+..+...+. .|.+-+.+.+++.|..+.+++|.+-++.
T Consensus 397 dNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 397 DNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred HHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 34444 4455555444 4445556678999999999998877664
No 61
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=1.2 Score=52.03 Aligned_cols=344 Identities=15% Similarity=0.046 Sum_probs=190.9
Q ss_pred cccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh
Q 004394 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (756)
Q Consensus 91 ~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~ 165 (756)
..+++.-..+..+.=.+-......-+|-.++.++..++... --+++...+.....|.++-||+.|+-|++.+..-
T Consensus 149 ~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg 228 (823)
T KOG2259|consen 149 VCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEG 228 (823)
T ss_pred CCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhccc
Confidence 34555555566665555555555666777777777775532 4566666688888999999999999999988762
Q ss_pred cCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHH
Q 004394 166 SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVL 245 (756)
Q Consensus 166 ~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL 245 (756)
. . . ......+..++ +.|.+..|..+|+.++.-..+..|.+.+..- +...+.+ ..+.++|..+.+.+=-..+..-
T Consensus 229 ~-k-L-~~~~Y~~A~~~-lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~-~e~kl~D-~aF~~vC~~v~D~sl~VRV~Aa 302 (823)
T KOG2259|consen 229 F-K-L-SKACYSRAVKH-LSDDYEDVRKAAVQLVSVWGNRCPAPLERES-EEEKLKD-AAFSSVCRAVRDRSLSVRVEAA 302 (823)
T ss_pred c-c-c-cHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHhcCCCcccchh-hhhhhHH-HHHHHHHHHHhcCceeeeehHH
Confidence 1 1 1 01224556666 5899999999999999888776653221111 1112333 3688899888775544455566
Q ss_pred HHHHhhCCCChhHH-----HHHHHHHHH-HhcccchHHHHHHHHH--HHhhccccc--hhHH---HHH-HHHHHHHHHhh
Q 004394 246 ELVAKYVPLDSNEI-----FDIMNLLED-RLQHANGAVVLSTIKV--FLHLTLSMT--DVHQ---QVY-ERIKAPLLTLV 311 (756)
Q Consensus 246 ~lL~~y~p~d~~e~-----~~il~~l~~-~L~~~n~aVvleaik~--ii~l~~~~~--~~~~---~~l-~rl~~~L~~LL 311 (756)
++|..+....++-. +++|..+.. +..|.-+.-+++.-.- ==.|..+-+ +... .++ ..+.+.++.=|
T Consensus 303 K~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGl 382 (823)
T KOG2259|consen 303 KALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGL 382 (823)
T ss_pred HHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeec
Confidence 66655533222111 112221110 0011111111110000 000000000 0000 000 01112233334
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCcccccccceee--ecCCCCHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHhhhCCHH
Q 004394 312 SSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY--CQYNEPSYVKKLKLEMLTAVANESNTY-EIVTELCEYAANVDIP 388 (756)
Q Consensus 312 ss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~--c~~~dp~~IK~~kLdIL~~L~n~~Nv~-~Iv~EL~~Yl~~~D~~ 388 (756)
.+.--|+|-.+...+..|+...|..-..-+. |. -.+|+..-||.+++.-|..+++.--+. +.++.+++-+.+..++
T Consensus 383 EDEf~EVR~AAV~Sl~~La~ssP~FA~~ald-fLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~d 461 (823)
T KOG2259|consen 383 EDEFYEVRRAAVASLCSLATSSPGFAVRALD-FLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVD 461 (823)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHH
Confidence 4445678888888888888888864332221 11 124555789999999999887653332 4566666777777777
Q ss_pred HHHHHHHHHHHHHhhcCChh---HHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc
Q 004394 389 IARESIRAVGKIALQQYDVN---AIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS 444 (756)
Q Consensus 389 ~~~~~I~aIg~lA~k~~~~~---~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~ 444 (756)
++..+-.-++. .++++.+ -|++-+++-|..-. .=.+|++..|.+|-+|++.+-
T Consensus 462 vRe~l~elL~~--~~~~d~~~i~m~v~~lL~~L~kyP-qDrd~i~~cm~~iGqnH~~lv 517 (823)
T KOG2259|consen 462 VREALRELLKN--ARVSDLECIDMCVAHLLKNLGKYP-QDRDEILRCMGRIGQNHRRLV 517 (823)
T ss_pred HHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHhhhCC-CCcHHHHHHHHHHhccChhhH
Confidence 76654444322 3666643 45555555554321 134688888888888887753
No 62
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.92 E-value=0.0027 Score=55.04 Aligned_cols=57 Identities=32% Similarity=0.273 Sum_probs=47.5
Q ss_pred HHHHhhc-CCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 138 GPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 138 ~~v~~~L-~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
+.+.+.| +|++++||..|+.++.++.. ++.++.|.++ ++|+|+.|..+|+.+|..+.
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD--------PEAIPALIEL-LKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH--------HHHHHHHHHH-HTSSSHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC--------HhHHHHHHHH-HcCCCHHHHHHHHHHHHHhC
Confidence 4566666 89999999999999995532 3468888897 59999999999999999884
No 63
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.87 E-value=0.029 Score=57.94 Aligned_cols=181 Identities=16% Similarity=0.123 Sum_probs=115.5
Q ss_pred cCCCChHHHHHHHHHHHHHhhhc-CCcccCCCchHHH-------HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHH
Q 004394 144 LKDNNSYVRTVAVIGVLKLYHIS-APTCIDADFPPTL-------KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASR 215 (756)
Q Consensus 144 L~d~~pyVRKkAalal~kl~~~~-p~~~~~~~~i~~L-------~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~ 215 (756)
-++.++-.|..|+..+-++...+ +... .+.+.+.+ ... +.|....|+.+|+.++.++...-+.....
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~-l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--- 90 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQ-LSDLRSKVSKTACQLLSDLARQLGSHFEP--- 90 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH--S-HH---HHHHHHHHHHHHHHHHGGGGHH---
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHhHhHHH---
Confidence 37788999999999999998877 2111 13333333 344 56888999999999999998754432111
Q ss_pred HHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHH-HHHHHHHhcccchHHHHHHHHHHHhhccccc-
Q 004394 216 EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-MNLLEDRLQHANGAVVLSTIKVFLHLTLSMT- 293 (756)
Q Consensus 216 ~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~i-l~~l~~~L~~~n~aVvleaik~ii~l~~~~~- 293 (756)
....++..|+..+.+.+.+......+.|..+...-+ -..++ ...+....+|.|+.|..+|+..+..+-...+
T Consensus 91 -----~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 91 -----YADILLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp -----HHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred -----HHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 112356778888889899988888887777654432 11234 6777888899999999999988766533222
Q ss_pred ---hhH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc
Q 004394 294 ---DVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 294 ---~~~-~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
.+. ...++.+.+.+..++++.++++|..+-+.+..+.+..|+
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 222 223567888899999999999999999999999888775
No 64
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.86 E-value=1.1 Score=52.44 Aligned_cols=134 Identities=20% Similarity=0.208 Sum_probs=93.2
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC--hhhhHHHHHHHHHh
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR--VANLVEYLVGPLGL 142 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~--~~ei~e~l~~~v~~ 142 (756)
|-.++..... +...|+|+=-++..|++.-|++.--++|++..=|.|.+..||--|+|.|..++ .++.+.-+...+.+
T Consensus 25 y~~il~~~kg-~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL~Q 103 (556)
T PF05918_consen 25 YKEILDGVKG-SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVLVQ 103 (556)
T ss_dssp HHHHHHGGGS--HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHHHH
T ss_pred HHHHHHHccC-CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHHHH
Confidence 4444444443 68899999999999999999999999999999999999999999999999997 46899999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHH
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
+|...++-.+..+=-++..+++.+|.... .++...+..- ...|..|.-.++..|.+-
T Consensus 104 lL~tdd~~E~~~v~~sL~~ll~~d~k~tL-~~lf~~i~~~--~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 104 LLQTDDPVELDAVKNSLMSLLKQDPKGTL-TGLFSQIESS--KSGDEQVRERALKFLREK 160 (556)
T ss_dssp HTT---HHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHH-----HS-HHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHhc--ccCchHHHHHHHHHHHHH
Confidence 99988887777666677777777776441 1222222210 134667788887777554
No 65
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.86 E-value=0.02 Score=60.53 Aligned_cols=150 Identities=20% Similarity=0.184 Sum_probs=100.1
Q ss_pred CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC
Q 004394 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (756)
Q Consensus 173 ~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~ 252 (756)
++-.+.|..+|-..+||.+..-|+.++......... .+.. -+-..+.-+.+.+++.+++.+.+.+..+..+.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~n------q~~I--r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls 82 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFN------QDII--RDLGGISLIGSLLNDPNPSVREKALNALNNLS 82 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhH------HHHH--HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcC
Confidence 344566666644467999999999999886542211 1110 00012344566788899999999999999886
Q ss_pred CCCh--hHHHHHHHHHHHH-hcc-cchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Q 004394 253 PLDS--NEIFDIMNLLEDR-LQH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (756)
Q Consensus 253 p~d~--~e~~~il~~l~~~-L~~-~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~ 328 (756)
...+ ...+..++.+... ..+ .|+.+..++.+++.+++... +.+ ..+.+..+.+..+|++++.++|.-+|+.|.-
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~-~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYH-HMLANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chh-hhHHhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5433 2334444444443 333 48899999999999997542 223 3344556678899999999999999998877
Q ss_pred HHhh
Q 004394 329 LVMR 332 (756)
Q Consensus 329 L~~~ 332 (756)
|...
T Consensus 161 LS~n 164 (254)
T PF04826_consen 161 LSEN 164 (254)
T ss_pred hccC
Confidence 7643
No 66
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.83 E-value=0.077 Score=61.63 Aligned_cols=132 Identities=20% Similarity=0.245 Sum_probs=108.7
Q ss_pred CChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC-----ChhhhHH-------HHHHHHHh
Q 004394 75 SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL-----RVANLVE-------YLVGPLGL 142 (756)
Q Consensus 75 ~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I-----~~~ei~e-------~l~~~v~~ 142 (756)
+|..--|-+-+++..+..-.|.+++---+.+.+=|.+..-..||.-+...+++ ..++|.+ .++.-+..
T Consensus 274 ~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~E 353 (1128)
T COG5098 274 PDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVE 353 (1128)
T ss_pred ccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHH
Confidence 44445477788888888889999999999999999999999999999999997 3444554 56777778
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhcCCcc-cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHISAPTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~~p~~~-~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
-+.|.+||+|-||...+-|+|....-.. .+++++..+.+. +.|+...|..||+.++..+..+.|
T Consensus 354 Rl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~-lqDrss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 354 RLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRR-LQDRSSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999998765544 245677777777 589999999999999998876555
No 67
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.76 E-value=0.77 Score=53.14 Aligned_cols=309 Identities=14% Similarity=0.133 Sum_probs=155.1
Q ss_pred cCCCccchhhhhh-hhccCCChhhHHHHHHHHHHccccCChHHH-----HHHHHHH----HHcCCCChHH--HHHHHHHH
Q 004394 57 IGIDVSAVFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQ----RDCKDEDPMI--RGLALRSL 124 (756)
Q Consensus 57 lG~Dvs~lF~~Vi-~l~~s~d~~~KkL~YLyl~~~~~~~~el~l-----L~iNtl~----KDL~s~Np~i--R~LALrtL 124 (756)
.||+... .++|+ ..+.|+|-+.||..-+....+.....+-.- .+.-.|+ +-....-+.. .-++--.+
T Consensus 435 a~h~tre-~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvil 513 (975)
T COG5181 435 ACHDTRE-HMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVIL 513 (975)
T ss_pred hhhhHHH-HHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHH
Confidence 4566654 34444 688999999999999999999876654211 1111111 1111111111 11222223
Q ss_pred hcC-ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh-------cCCC--hhHHHH
Q 004394 125 CSL-RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML-------NDPD--PQVVAN 194 (756)
Q Consensus 125 s~I-~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL-------~D~d--~~Vv~~ 194 (756)
+.. +.+ ++..-|..-++|+..--||-+|-++-|++..-+.. +|-+++.+.++ .+++ .+++.-
T Consensus 514 Ak~~g~~----~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~----~~dErleerl~d~il~Afqeq~~t~~~il~ 585 (975)
T COG5181 514 AKMGGDP----RVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRL----GFDERLEERLYDSILNAFQEQDTTVGLILP 585 (975)
T ss_pred HHHcCCh----HHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccc----cccHHHHHHHHHHHHHHHHhccccccEEEe
Confidence 322 233 44555667788887666999999999999876654 34444444321 1111 222222
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC-----ChhHHHHHHHHHHHH
Q 004394 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-----DSNEIFDIMNLLEDR 269 (756)
Q Consensus 195 Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~-----d~~e~~~il~~l~~~ 269 (756)
++.+..--.... | .....+++..+|+.|+...|-..+.-.++.+.+.+- +.++..++=+.+-..
T Consensus 586 ~f~tv~vsl~~r-------~----kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~ 654 (975)
T COG5181 586 CFSTVLVSLEFR-------G----KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYEN 654 (975)
T ss_pred cccceeeehhhc-------c----CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHh
Confidence 211110000000 0 011235667777777777777777777766655431 223333333444444
Q ss_pred hcccchHHHHHHHHHHHhhcccc-----chhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccccee
Q 004394 270 LQHANGAVVLSTIKVFLHLTLSM-----TDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF 344 (756)
Q Consensus 270 L~~~n~aVvleaik~ii~l~~~~-----~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f 344 (756)
|-...+-|+=..+++|+.+.... .-...+++.+ |.-.|.++..-+.--.+..+..|+.+.|+.
T Consensus 655 lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~----ltPILrnkh~Kv~~nti~lvg~I~~~~pey-------- 722 (975)
T COG5181 655 LGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPS----LTPILRNKHQKVVANTIALVGTICMNSPEY-------- 722 (975)
T ss_pred cCcccHHHHHHHHHHHHHHhhhhcccccCCchhhcccc----ccHhhhhhhHHHhhhHHHHHHHHHhcCccc--------
Confidence 44445555444444443332211 0011122222 222344444444444555555555555541
Q ss_pred eecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhh
Q 004394 345 YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLE 419 (756)
Q Consensus 345 ~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~ 419 (756)
|- ..-+-.|.=||.+-+.+-+.+++|.+...+|-|+..... ...+++|++=|+
T Consensus 723 ---------i~------------~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP-qdvL~~LlnnLk 775 (975)
T COG5181 723 ---------IG------------VREWMRICFELVDSLKSWNKEIRRNATETFGCISRAIGP-QDVLDILLNNLK 775 (975)
T ss_pred ---------CC------------HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH-HHHHHHHHhcch
Confidence 11 112445556667777777778888888888877766521 224455554443
No 68
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.54 E-value=2.6 Score=53.56 Aligned_cols=183 Identities=11% Similarity=0.163 Sum_probs=119.7
Q ss_pred hhhhhccCCChhhHHHHHHHHHHccccCChHHH--HHHHHHHHHcCCCChHHHHHHHHHHhc--CChhhhHHHHHHHHHh
Q 004394 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCS--LRVANLVEYLVGPLGL 142 (756)
Q Consensus 67 ~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l--L~iNtl~KDL~s~Np~iR~LALrtLs~--I~~~ei~e~l~~~v~~ 142 (756)
.++..+..+.+.+|-=+-=.++.....+|.+.. .+=-++..-+.|..-.||-.||.-+|. +..++.++..+..|..
T Consensus 820 ~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY~~i~e 899 (1692)
T KOG1020|consen 820 LILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYYDQIIE 899 (1692)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHHHHHHh
Confidence 344556666666665555566666666666432 233445556778889999999999997 4679999999999999
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhcc
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~ 222 (756)
.+.|+.-.|||.|+-=+-.+|...|+.....+...++.+. .+|....|.=-+.-.+.++|-..+.. ....+.....+.
T Consensus 900 rIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrR-v~DEEg~I~kLv~etf~klWF~p~~~-~~d~~~~~~kI~ 977 (1692)
T KOG1020|consen 900 RILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRR-VNDEEGNIKKLVRETFLKLWFTPVPE-VNDQPAKARKIS 977 (1692)
T ss_pred hcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHhccCCCc-ccccHHHHHhhH
Confidence 9999999999999999999999999975433333333333 36776667777777888887643321 000011100110
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhhC
Q 004394 223 KPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (756)
Q Consensus 223 ~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~ 252 (756)
......-.+..-...|.+-.+..+|..+.
T Consensus 978 -~~~~vv~~~~d~~~~~~eqLl~~ilk~~~ 1006 (1692)
T KOG1020|consen 978 -LEVDVVMSQVDLMNDWLEQLLDHILKFYL 1006 (1692)
T ss_pred -HHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 01222222334467888887777776654
No 69
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.52 E-value=0.02 Score=66.20 Aligned_cols=190 Identities=16% Similarity=0.142 Sum_probs=123.9
Q ss_pred hhhhh-hhccC----CChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhcCC--hhhhHHHH
Q 004394 65 FGEMV-MCSAT----SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLR--VANLVEYL 136 (756)
Q Consensus 65 F~~Vi-~l~~s----~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~-s~Np~iR~LALrtLs~I~--~~ei~e~l 136 (756)
|-.++ +..++ +|-++.+-+||.+..+.--..+.+.---..|..-+. +|||.||+.|.-.||.+. -..+++..
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~ 972 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH 972 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH
Confidence 55555 44444 678888889988776543333333323334444444 899999999999999864 35566666
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHH
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~ 216 (756)
...+-+.|.|.+..|||++.|.+.-+.....=.+ .+....+..+ |.|+|..+.--|=..+.+++.++...+.
T Consensus 973 t~yLyrrL~De~~~V~rtclmti~fLilagq~KV--KGqlg~ma~~-L~deda~Isdmar~fft~~a~KdNt~yn----- 1044 (1128)
T COG5098 973 THYLYRRLGDEDADVRRTCLMTIHFLILAGQLKV--KGQLGKMALL-LTDEDAEISDMARHFFTQIAKKDNTMYN----- 1044 (1128)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHccceee--ccchhhhHhh-ccCCcchHHHHHHHHHHHHHhcccchhh-----
Confidence 6677788999999999999999998876544333 5667777776 7999999988888899999887654311
Q ss_pred HHhhccHHHHHHHHHHhccCChhHH---HHHHHHHHhhCCCChhHHHHHHHHHHHHhc
Q 004394 217 REALISKPVIYYLLNRIKEFSEWAQ---CLVLELVAKYVPLDSNEIFDIMNLLEDRLQ 271 (756)
Q Consensus 217 ~~~ll~~~~~~~Ll~~l~~~~~W~Q---i~IL~lL~~y~p~d~~e~~~il~~l~~~L~ 271 (756)
-+..+...+..-++-+| -.|+++|..|.... +.-..+-+.+..++.
T Consensus 1045 --------~fidifs~ls~~ae~g~e~fk~II~FLt~fI~ke-rh~kql~E~L~~rl~ 1093 (1128)
T COG5098 1045 --------GFIDIFSTLSSDAENGQEPFKLIIGFLTDFISKE-RHQKQLKESLFLRLL 1093 (1128)
T ss_pred --------hhHHHHHHcCchhhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 11223333433333333 36788888775322 223334455554443
No 70
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.51 E-value=0.96 Score=54.54 Aligned_cols=331 Identities=18% Similarity=0.208 Sum_probs=173.2
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHcc--ccCChHHH--HHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----hH-H
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV-E 134 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~--~~~~el~l--L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i~-e 134 (756)
+.-.++++.+++.++.-++.-++..+. .+|.+.+. =++..+.|-+.++|+..+-.|||.|.++.... |+ .
T Consensus 292 V~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~ 371 (708)
T PF05804_consen 292 VSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSL 371 (708)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHC
Confidence 444567888888888777777777664 33333222 34788999999999999999999999986432 22 2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcC-----CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccc
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-----PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p-----~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~ 209 (756)
-++|.+..+|.|++ .|-. ++++ +|+.+- ..+...+-++.+.++|+.-+++.|-..+++++..++... ..
T Consensus 372 GlIPkLv~LL~d~~--~~~v-al~i--Ly~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rn 445 (708)
T PF05804_consen 372 GLIPKLVELLKDPN--FREV-ALKI--LYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RN 445 (708)
T ss_pred CCcHHHHHHhCCCc--hHHH-HHHH--HHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HH
Confidence 24577888887654 3322 3333 333322 122345567888777666677777666666666665422 11
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHH---HHHhcc-cchHHHHHHHHHH
Q 004394 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLL---EDRLQH-ANGAVVLSTIKVF 285 (756)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l---~~~L~~-~n~aVvleaik~i 285 (756)
....|.. .-+..|++.... |--..+|++++.....++.....+.+.+ ...+.+ .+...+.||+-++
T Consensus 446 aqlm~~g-------~gL~~L~~ra~~---~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiL 515 (708)
T PF05804_consen 446 AQLMCEG-------NGLQSLMKRALK---TRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGIL 515 (708)
T ss_pred HHHHHhc-------CcHHHHHHHHHh---cccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence 1112211 123444443222 2234455555555443322222333333 344444 4678999999999
Q ss_pred HhhccccchhHHHHHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHH
Q 004394 286 LHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLT 363 (756)
Q Consensus 286 i~l~~~~~~~~~~~l~--rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~ 363 (756)
-+++....+. .++++ .+.+-|..+|..+..+ -=+.|+.+..+... | . |+.- -.
T Consensus 516 aNL~~~~ld~-~~ll~~~~llp~L~~~L~~g~~~-dDl~LE~Vi~~gtl-------------a-~-d~~~--------A~ 570 (708)
T PF05804_consen 516 ANLTIPDLDW-AQLLQEYNLLPWLKDLLKPGASE-DDLLLEVVILLGTL-------------A-S-DPEC--------AP 570 (708)
T ss_pred HhcccCCcCH-HHHHHhCCHHHHHHHHhCCCCCC-hHHHHHHHHHHHHH-------------H-C-CHHH--------HH
Confidence 8887543332 22332 3445566666433211 12444444322211 0 0 1100 00
Q ss_pred HhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-------hHHHHHHHHHhhhcCchhhHHHHHHHHHH
Q 004394 364 AVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-------NAIVDRLLQFLEMEKDYVTAEALVLVKDL 436 (756)
Q Consensus 364 ~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-------~~~vd~Ll~LL~~~~~~v~~E~i~~i~~I 436 (756)
.++. +.+...+-+|+.- ...|.||+-.++-...++... ++. ...+..+++++...+. ....+....-+|
T Consensus 571 lL~~-sgli~~Li~LL~~-kqeDdE~VlQil~~f~~ll~h-~~tr~~ll~~~~~~~ylidL~~d~N~-~ir~~~d~~Ldi 646 (708)
T PF05804_consen 571 LLAK-SGLIPTLIELLNA-KQEDDEIVLQILYVFYQLLFH-EETREVLLKETEIPAYLIDLMHDKNA-EIRKVCDNALDI 646 (708)
T ss_pred HHHh-CChHHHHHHHHHh-hCchHHHHHHHHHHHHHHHcC-hHHHHHHHhccchHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence 1111 2222222233321 234777777777777666532 211 2355667777776554 334444444555
Q ss_pred HhhC
Q 004394 437 LRKY 440 (756)
Q Consensus 437 l~~~ 440 (756)
+..+
T Consensus 647 i~e~ 650 (708)
T PF05804_consen 647 IAEY 650 (708)
T ss_pred HHHh
Confidence 5544
No 71
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.47 E-value=0.086 Score=56.80 Aligned_cols=215 Identities=16% Similarity=0.160 Sum_probs=150.8
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCCh-hhhH-HHH-----HHHHHhhcCCCCh--HHHHHHHHHHHHHhh-hcCCcc
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV-ANLV-EYL-----VGPLGLGLKDNNS--YVRTVAVIGVLKLYH-ISAPTC 170 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~-~ei~-e~l-----~~~v~~~L~d~~p--yVRKkAalal~kl~~-~~p~~~ 170 (756)
++..|..=|.+++.-+|--|+=+||+|.. .+.+ +++ ..++..++..+.+ -.-|+|--.+-.+++ ++|.
T Consensus 158 AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~-- 235 (526)
T COG5064 158 AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPP-- 235 (526)
T ss_pred chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCC--
Confidence 45677888899999999999999999954 3333 232 4566777766666 344788888888887 4554
Q ss_pred cCCCc------hHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHH
Q 004394 171 IDADF------PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (756)
Q Consensus 171 ~~~~~------i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~I 244 (756)
++| ++.|.++ +...|+.|+.-|+=++..+..- | . .|.+ ..++..+..+|+..|...+--.|.-+
T Consensus 236 --P~w~~isqalpiL~KL-iys~D~evlvDA~WAiSYlsDg-~--~--E~i~--avld~g~~~RLvElLs~~sa~iqtPa 305 (526)
T COG5064 236 --PDWSNISQALPILAKL-IYSRDPEVLVDACWAISYLSDG-P--N--EKIQ--AVLDVGIPGRLVELLSHESAKIQTPA 305 (526)
T ss_pred --CchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHhccC-c--H--HHHH--HHHhcCCcHHHHHHhcCccccccCHH
Confidence 444 5778886 6899999999999999988532 1 1 1221 22333455778888877777779999
Q ss_pred HHHHHhhCCCChhHHHH-----HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcch
Q 004394 245 LELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQ 318 (756)
Q Consensus 245 L~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~ni 318 (756)
||.+......+.....- .+..+.++|+|.-..+.-||+.+|-.++....+-.+.+++ .+++||+.+|++-+--+
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~ 385 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKI 385 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 99999887665544333 3566778888887889999999999888654432234443 46789999998766555
Q ss_pred HHHHHHHHH
Q 004394 319 SYAVLSHLH 327 (756)
Q Consensus 319 rYvaL~~l~ 327 (756)
|--|.=++.
T Consensus 386 kKEACWAis 394 (526)
T COG5064 386 KKEACWAIS 394 (526)
T ss_pred HHHHHHHHH
Confidence 554444443
No 72
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.49 Score=55.19 Aligned_cols=307 Identities=13% Similarity=0.063 Sum_probs=168.2
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHH--HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc--cC
Q 004394 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEY--LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--ID 172 (756)
Q Consensus 97 l~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~--l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~--~~ 172 (756)
++...++.+++.+.+.--..--.-|.+.++-+.+..... +...-+...++.+..+|-++....+-+- ..|+.+ ++
T Consensus 118 I~~~~~~~lr~e~~~~vLa~~~~~l~~~g~~~~~~~~~i~l~~~~a~~~~~~~s~~~~~~~~~~~~~lg-~~~ss~~~d~ 196 (823)
T KOG2259|consen 118 ISDYASLELRAECSDHVLAQYLDNLLAIGCPVCEEDIYILLLHGVAKVRSSISSTGNRLLLYCFHLPLG-VSPSSLTHDR 196 (823)
T ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHhccCCCchhhHHHHHhhhHHHhhhcccccchHHHHHHhhhcc-cCCCcccccH
Confidence 344667777777766533333344555555543333221 1122222223344445544443333332 223333 12
Q ss_pred CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh-
Q 004394 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY- 251 (756)
Q Consensus 173 ~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y- 251 (756)
+.....+..+ .+|.|+.|..+|+..|..+.+ + ..+++..+.+.++.+.+-.+=.....++++..|
T Consensus 197 ~~~~~~l~~~-~~~~D~~Vrt~A~eglL~L~e--g-----------~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~g 262 (823)
T KOG2259|consen 197 EHAARGLIYL-EHDQDFRVRTHAVEGLLALSE--G-----------FKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWG 262 (823)
T ss_pred HHHHHHHHHH-hcCCCcchHHHHHHHHHhhcc--c-----------ccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 2333446665 689999999999999988754 1 235566677777888877776666666666554
Q ss_pred --CCC--Ch-hHHHHHHH----HHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHH
Q 004394 252 --VPL--DS-NEIFDIMN----LLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAV 322 (756)
Q Consensus 252 --~p~--d~-~e~~~il~----~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYva 322 (756)
.|. +. .+-.++.+ .+-..++..+-.|..+|+|.+..+..-..++.+|.+.| .+.+=+. --|. +
T Consensus 263 n~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdK---Klms~lR----Rkr~-a 334 (823)
T KOG2259|consen 263 NRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDK---KLMSRLR----RKRT-A 334 (823)
T ss_pred hcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHH---HHhhhhh----hhhh-c
Confidence 332 11 11222333 23334555666788999999988876444444444432 1111000 0000 0
Q ss_pred HHHHHHHHhhC---------Ccccccc-------------cceeeec-CCCCHHHHHHHHHHHHHhcC--CCCHHHHHHH
Q 004394 323 LSHLHILVMRA---------PFIFASD-------------YKHFYCQ-YNEPSYVKKLKLEMLTAVAN--ESNTYEIVTE 377 (756)
Q Consensus 323 L~~l~~L~~~~---------p~lf~~~-------------~~~f~c~-~~dp~~IK~~kLdIL~~L~n--~~Nv~~Iv~E 377 (756)
=+.=..+.+.. -++=+.| ...|.-- .|+=--||+-+.+-++.|+. ++-...-++-
T Consensus 335 hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~aldf 414 (823)
T KOG2259|consen 335 HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALDF 414 (823)
T ss_pred ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 00000111110 0000111 0112111 22225699999999999987 6777888887
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhh
Q 004394 378 LCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVT 426 (756)
Q Consensus 378 L~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~ 426 (756)
|.+-+.+...+++-++|.++..|+....=.+.+++++++-|......|.
T Consensus 415 LvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 415 LVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHH
Confidence 7788787778889999999999887743335678888887776543333
No 73
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.40 E-value=2.4 Score=51.16 Aligned_cols=172 Identities=10% Similarity=0.152 Sum_probs=104.9
Q ss_pred HHHHHH-cCCCChHHHHHHHHHHhc-CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 103 NFLQRD-CKDEDPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 103 Ntl~KD-L~s~Np~iR~LALrtLs~-I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
-+++.. +.+.|...|--|++.+=. +...+=...+.+.|.|.....+.-+||---+=+...-+.+|+.+. -.++.+.
T Consensus 21 ~~~~sg~l~s~n~~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~ 98 (757)
T COG5096 21 AALSSGRLESSNDYKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQ 98 (757)
T ss_pred hhhccccccccChHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHH
Confidence 445555 888899888888776533 222222566677777777788889998877777777777776541 1233333
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH
Q 004394 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~ 260 (756)
+= +.|+|+.+++.|+..+..+...+ +..+++.-+.+.+.+.++...-...-.+.++..-+.+...
T Consensus 99 kD-l~d~N~~iR~~AlR~ls~l~~~e--------------l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~ 163 (757)
T COG5096 99 KD-LQDPNEEIRGFALRTLSLLRVKE--------------LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYH 163 (757)
T ss_pred hh-ccCCCHHHHHHHHHHHHhcChHH--------------HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhh
Confidence 33 47888888888888887763211 1122333444455666666655555555554444444332
Q ss_pred H--HHHHHHHHhcccchHHHHHHHHHHHhhccc
Q 004394 261 D--IMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (756)
Q Consensus 261 ~--il~~l~~~L~~~n~aVvleaik~ii~l~~~ 291 (756)
+ .+..+..++..+++-|+-+|...+..+.+.
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 2 345555566667777777777777666553
No 74
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.65 Score=55.54 Aligned_cols=178 Identities=20% Similarity=0.171 Sum_probs=121.2
Q ss_pred HHHHHHHcCCC-ChHHHHHHHHHHhcC---Chhh-----hHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCcc-
Q 004394 102 INFLQRDCKDE-DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTC- 170 (756)
Q Consensus 102 iNtl~KDL~s~-Np~iR~LALrtLs~I---~~~e-----i~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~~- 170 (756)
.+.|..-++.. +|...--||.-||.+ ++++ .++.++|.+..+|+|. ++.+---|+-|+..++...|..+
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 46666777665 889988999988874 4444 4688999999999987 58999999999999999999865
Q ss_pred --cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHH
Q 004394 171 --IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELV 248 (756)
Q Consensus 171 --~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL 248 (756)
.+++.++.|...|+.=+-..|.=.++.+|..|.+..|.. |.. ...+..-+.-+.=++--.|-+.|-+.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~A----iL~------AG~l~a~LsylDFFSi~aQR~Alaia 318 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKA----ILQ------AGALSAVLSYLDFFSIHAQRVALAIA 318 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHH----HHh------cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677776665555555667788999999998876641 110 00111111112223444677788877
Q ss_pred HhhCCC----ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 004394 249 AKYVPL----DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 249 ~~y~p~----d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
+..|.+ +..-.-+.+..|.++|++...-++-.+.-|+.++.
T Consensus 319 aN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 319 ANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred HHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 777644 23333445667788999887666665555666553
No 75
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.20 E-value=0.015 Score=46.23 Aligned_cols=49 Identities=27% Similarity=0.245 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhcCCh------hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 004394 114 PMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (756)
Q Consensus 114 p~iR~LALrtLs~I~~------~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl 162 (756)
|.+|..|+.+||++.. ....+.+++.+..+|.|+++.||.+|+.|+.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999998742 336678888899999999999999999998754
No 76
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=96.16 E-value=0.29 Score=52.86 Aligned_cols=282 Identities=16% Similarity=0.184 Sum_probs=169.6
Q ss_pred CCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhcc
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~ 222 (756)
+.+....=-|+-++..+-.-..+ .+.+.+.++.+..+ |.+.+..|.-.++=+|..|+-.++ .|++.. +.
T Consensus 126 ~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiql-L~s~~~~V~eQavWALGNiAGDS~-----~~RD~v--L~ 197 (526)
T COG5064 126 IQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQL-LSSTEDDVREQAVWALGNIAGDSE-----GCRDYV--LQ 197 (526)
T ss_pred cchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHH-HcCchHHHHHHHHHHhccccCCch-----hHHHHH--Hh
Confidence 33444555788888877653322 34577889999997 689999999999999999976544 355432 22
Q ss_pred HHHHHHHHHHhccCChhHHHHHHH----HHHhhCCC-----ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc
Q 004394 223 KPVIYYLLNRIKEFSEWAQCLVLE----LVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT 293 (756)
Q Consensus 223 ~~~~~~Ll~~l~~~~~W~Qi~IL~----lL~~y~p~-----d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~ 293 (756)
-..+.-+|+.+.+... -+.+|| .|..+++. +-......++.+..++.+..+-|+..|..+|-++.....
T Consensus 198 ~galeplL~ll~ss~~--~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~ 275 (526)
T COG5064 198 CGALEPLLGLLLSSAI--HISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPN 275 (526)
T ss_pred cCchHHHHHHHHhccc--hHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcH
Confidence 2234555555443222 233333 34444432 334456677888888999999999999999998865322
Q ss_pred hhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc---cccc--ccceee-ecCCCCHHHHHHHHHHHHHhc
Q 004394 294 DVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF---IFAS--DYKHFY-CQYNEPSYVKKLKLEMLTAVA 366 (756)
Q Consensus 294 ~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~---lf~~--~~~~f~-c~~~dp~~IK~~kLdIL~~L~ 366 (756)
+-.+.+++ .+..-|+.+|++.+..++--+|+.+--|+.-.-. ++.+ -++.|- .+.+.-.-||+++--.+..+
T Consensus 276 E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI- 354 (526)
T COG5064 276 EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI- 354 (526)
T ss_pred HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc-
Confidence 22222332 1222377889888999999999988776643211 1100 011111 12333356888777766665
Q ss_pred CCCCHHHH--------HHHHHHHhhhCCHHHHHHHHHHHHHHHh---hcCCh------hHHHHHHHHHhhhcCchhhHHH
Q 004394 367 NESNTYEI--------VTELCEYAANVDIPIARESIRAVGKIAL---QQYDV------NAIVDRLLQFLEMEKDYVTAEA 429 (756)
Q Consensus 367 n~~Nv~~I--------v~EL~~Yl~~~D~~~~~~~I~aIg~lA~---k~~~~------~~~vd~Ll~LL~~~~~~v~~E~ 429 (756)
+..|.++| +.-|.+.+...|.-+++++.=+|....- ..|+. ..||+-|.++|....+.+.+-.
T Consensus 355 TAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~ 434 (526)
T COG5064 355 TAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVA 434 (526)
T ss_pred ccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhh
Confidence 45666654 3445566666677788888888876542 23442 1355556666665555455444
Q ss_pred HHHHHHHHh
Q 004394 430 LVLVKDLLR 438 (756)
Q Consensus 430 i~~i~~Il~ 438 (756)
+..+++|++
T Consensus 435 LD~~eniLk 443 (526)
T COG5064 435 LDAIENILK 443 (526)
T ss_pred HHHHHHHHh
Confidence 555555553
No 77
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=4.4 Score=47.99 Aligned_cols=338 Identities=15% Similarity=0.198 Sum_probs=178.7
Q ss_pred HHHHHHHHHHccccCChHH-HHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 004394 80 KKMCYLYVGNYAKVNPDLA-LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIG 158 (756)
Q Consensus 80 KkL~YLyl~~~~~~~~el~-lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAala 158 (756)
=||.|+|+.-| +=|.. +-++|-+. .-+=+...|=-+++..|-+ ...++...+...|++=|...+|-----|..|
T Consensus 60 ~KLlyI~llg~---dIdFGhmEaV~LLs-s~kysEKqIGYl~is~L~n-~n~dl~klvin~iknDL~srn~~fv~LAL~~ 134 (938)
T KOG1077|consen 60 CKLLYIYLLGY---DIDFGHMEAVNLLS-SNKYSEKQIGYLFISLLLN-ENSDLMKLVINSIKNDLSSRNPTFVCLALHC 134 (938)
T ss_pred HHHHHHHHhcC---ccccchHHHHHHhh-cCCccHHHHhHHHHHHHHh-cchHHHHHHHHHHHhhhhcCCcHHHHHHHHH
Confidence 36888888764 22222 23455432 2222234455566666655 3478888999999999988888777788888
Q ss_pred HHHHhhhcCCcccCCCchHHHHHhHh-cCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccH-HHHHHHHHHhccC
Q 004394 159 VLKLYHISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIKEF 236 (756)
Q Consensus 159 l~kl~~~~p~~~~~~~~i~~L~~lLL-~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~-~~~~~Ll~~l~~~ 236 (756)
+..+-... .. +.|-+.+.++|. .+.-..|.-.|.-.|..+.+..|+. +.+ ..+.+++..|.+-
T Consensus 135 I~niG~re--~~--ea~~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl-----------~~~~~W~~riv~LL~D~ 199 (938)
T KOG1077|consen 135 IANIGSRE--MA--EAFADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL-----------VNPGEWAQRIVHLLDDQ 199 (938)
T ss_pred HHhhccHh--HH--HHhhhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc-----------cChhhHHHHHHHHhCcc
Confidence 88776532 12 234444555532 2444556544444455566655542 222 1344454444443
Q ss_pred C---hhHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHhcc-------------cchHHHHHHHHHHHhhccccchhHHHH
Q 004394 237 S---EWAQCLVLELVAKYVPLDSNEI-FDIMNLLEDRLQH-------------ANGAVVLSTIKVFLHLTLSMTDVHQQV 299 (756)
Q Consensus 237 ~---~W~Qi~IL~lL~~y~p~d~~e~-~~il~~l~~~L~~-------------~n~aVvleaik~ii~l~~~~~~~~~~~ 299 (756)
+ --.-+.++++|.++.|..-... ..-+..+...... .++=.....++++..+.. .+|.. .
T Consensus 200 ~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~-~~D~~--~ 276 (938)
T KOG1077|consen 200 HMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT-PEDPS--T 276 (938)
T ss_pred ccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC-CCCch--H
Confidence 2 1124567777777665432111 0001111111000 122233344444444422 11110 1
Q ss_pred HHHHHHHHHHhhcCC----------CcchHHHHHH-HHHHHHhhC--Cccccccccee-eecCCCCHHHHHHHHHHHHHh
Q 004394 300 YERIKAPLLTLVSSG----------SPEQSYAVLS-HLHILVMRA--PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAV 365 (756)
Q Consensus 300 l~rl~~~L~~LLss~----------~~nirYvaL~-~l~~L~~~~--p~lf~~~~~~f-~c~~~dp~~IK~~kLdIL~~L 365 (756)
..++...|-++|+.. ..|.+-.+|- +|..+...+ |+++.+-...+ -...+..+-||.++||-++.|
T Consensus 277 r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L 356 (938)
T KOG1077|consen 277 RARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKL 356 (938)
T ss_pred HHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence 122233333333311 1233333333 233333222 33433322211 012345567999999999999
Q ss_pred cCCCCHHHHHHHHHHH----hh-hCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhC
Q 004394 366 ANESNTYEIVTELCEY----AA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKY 440 (756)
Q Consensus 366 ~n~~Nv~~Iv~EL~~Y----l~-~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~ 440 (756)
|..+-..+.|+.=.+- +. +.|..++++++.-+=-.+.. .++..+|+-|++.|.++...+.+|.+.-+.-+-++|
T Consensus 357 ~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak~IV~elLqYL~tAd~sireeivlKvAILaEKy 435 (938)
T KOG1077|consen 357 ASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAKQIVAELLQYLETADYSIREEIVLKVAILAEKY 435 (938)
T ss_pred HhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHh
Confidence 9998777777654433 23 67899999888766443322 244579999999999976667777776666677777
Q ss_pred C
Q 004394 441 P 441 (756)
Q Consensus 441 p 441 (756)
.
T Consensus 436 A 436 (938)
T KOG1077|consen 436 A 436 (938)
T ss_pred c
Confidence 5
No 78
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=96.09 E-value=1 Score=51.22 Aligned_cols=331 Identities=13% Similarity=0.134 Sum_probs=173.5
Q ss_pred chHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC
Q 004394 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~ 254 (756)
+...+..+|-...+..++...+.++.++...+|+.... ..+. .+-++..+..+++.+..-+.+.+.+...+|+.+...
T Consensus 54 y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~-f~~~-~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 54 YVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKL-FHDD-ALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHH-HHHH-hhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 34445555444667778888888888888766541100 0000 000112244455555556777888888888776432
Q ss_pred ---Ch--hHHHHHHHHHHHHhccc-chHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHhhcC--CCcchHHHHHHH
Q 004394 255 ---DS--NEIFDIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSS--GSPEQSYAVLSH 325 (756)
Q Consensus 255 ---d~--~e~~~il~~l~~~L~~~-n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss--~~~nirYvaL~~ 325 (756)
+. .+...+.+.+...|++. ++..+.-|++++-.+-.. +..+.... .+-.++|..+|+. .+..++|-++-.
T Consensus 132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence 21 12233556666777653 344555555665444321 12221111 1234567777754 245788988887
Q ss_pred HHHHHhhCCcccc--ccccee----e-ecCCCCHHHHHHHHHHHHHhcCCC--------CHHHHHH-HHHHHhh------
Q 004394 326 LHILVMRAPFIFA--SDYKHF----Y-CQYNEPSYVKKLKLEMLTAVANES--------NTYEIVT-ELCEYAA------ 383 (756)
Q Consensus 326 l~~L~~~~p~lf~--~~~~~f----~-c~~~dp~~IK~~kLdIL~~L~n~~--------Nv~~Iv~-EL~~Yl~------ 383 (756)
+=.+.-..+ ... .+...+ . .+...-.-|=|..+-+|..+.+.. ....+|. .+...+.
T Consensus 211 lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 211 IWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 766643222 111 111111 0 112222345566777777777743 1122332 2222222
Q ss_pred hCCHHHHHHHHHHHHHHHhhc---CChhHHHH-HHHHHhhhcCchhhHHHHH-HHHHHHhhCCCcchHHHHHHHHhhhcc
Q 004394 384 NVDIPIARESIRAVGKIALQQ---YDVNAIVD-RLLQFLEMEKDYVTAEALV-LVKDLLRKYPQWSHDCIAVVGSISSQN 458 (756)
Q Consensus 384 ~~D~~~~~~~I~aIg~lA~k~---~~~~~~vd-~Ll~LL~~~~~~v~~E~i~-~i~~Il~~~p~~~~~~~~~l~~l~~~~ 458 (756)
-.|+|+..++-.--..+.+++ .+.+.|.. .....|+=+.-|-.+.-|. ....+-.+ + -..+..+.+++ +.
T Consensus 290 ~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~--~--~~llk~L~~iL-~~ 364 (429)
T cd00256 290 YDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEK--N--YELLKILIHLL-ET 364 (429)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhc--c--hHHHHHHHHHH-hc
Confidence 257777665544444444443 23333322 2222233233344444443 22222211 1 12345556665 33
Q ss_pred CCchhHHHHHHhHhccCCCCCCChHHHHHHH------hhhhccCChHHHHHHHHHHhhHhhhc
Q 004394 459 VQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHLLTAVMKCFFK 515 (756)
Q Consensus 459 i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l------~~~f~~e~~~~Vq~~lLtA~~Kl~~~ 515 (756)
-.+|...+.++.=||||..+.+....+++.+ .+-...++ ++||-+.|.|+-|+..+
T Consensus 365 s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d-~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 365 SVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHED-PNVRYEALLAVQKLMVH 426 (429)
T ss_pred CCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHHHh
Confidence 4688889999999999999998877776642 23333455 99999999999998754
No 79
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=1.8 Score=55.19 Aligned_cols=242 Identities=14% Similarity=0.166 Sum_probs=150.5
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceee----ecCC-CCHHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Q 004394 307 LLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY----CQYN-EPSYVKKLKLEMLTAV--ANESNTYEIVTELC 379 (756)
Q Consensus 307 L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~----c~~~-dp~~IK~~kLdIL~~L--~n~~Nv~~Iv~EL~ 379 (756)
|..|++.. .+..--|.+.-..++.+.+....+.+..|+ |.+. .-..++..--++++.| +..+-+-.|+.+|.
T Consensus 187 l~~lv~~~-~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~ 265 (1266)
T KOG1525|consen 187 LENLVKPG-RDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKYHELILELWRIAPQLLLAVIPQLE 265 (1266)
T ss_pred HHHhccCC-CCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555544 333334444444555555544444454443 2222 2345666666777775 45566667888888
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHhh---hcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHh
Q 004394 380 EYAANVDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFLE---MEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSI 454 (756)
Q Consensus 380 ~Yl~~~D~~~~~~~I~aIg~lA~k~~~~--~~~vd~Ll~LL~---~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l 454 (756)
.-+...+.++|.+++.-+|++-...... ..|-++...+|. .....|.-+++....+++..+|+..+... .+..+
T Consensus 266 ~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~-~~~~l 344 (1266)
T KOG1525|consen 266 FELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKAST-ILLAL 344 (1266)
T ss_pred HHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHH-HHHHH
Confidence 8888889999999999999876543211 123344444444 33456888899999999999998765432 22222
Q ss_pred hhccCCchhHHHHHHhHhccCC--C-CCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcC---------------
Q 004394 455 SSQNVQEPKAKAALIWMLGEYS--Q-DMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR--------------- 516 (756)
Q Consensus 455 ~~~~i~~p~ak~a~iWiLGEy~--~-~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~--------------- 516 (756)
. ....|++.+....-+++.-. . .....+.++..+.++..+-. ..||.+.+..++++|-+.
T Consensus 345 ~-~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk-~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~~~ 422 (1266)
T KOG1525|consen 345 R-ERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKK-IKVRKQAMNGLAQLYKNVYCLRSAGGKEITPPF 422 (1266)
T ss_pred H-hhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 1 22234444433333333321 1 11123337888888888878 999999999999999751
Q ss_pred ---Ch-----------hhHHHHHHHHHhhhcCCChHHHhHHHHHHHHhcC
Q 004394 517 ---PP-----------ETQKVLGAALAAGLADFHQDVHDRALFYHRLLQY 552 (756)
Q Consensus 517 ---p~-----------e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~ 552 (756)
|. +.+.++..+|..+.-..+.++|+|-.-.+.+|..
T Consensus 423 swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~ 472 (1266)
T KOG1525|consen 423 SWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAG 472 (1266)
T ss_pred cccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Confidence 11 2235667778877777899999999998888875
No 80
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.05 E-value=1.1 Score=51.97 Aligned_cols=101 Identities=16% Similarity=0.126 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCccc--CCCchH
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPP 177 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~~~--~~~~i~ 177 (756)
.+.+++-|..+.+|++|--.-|+.+-....-=++.+.|.+..+..+. +.--|.+.+-++.++..+..-.+. -..+.+
T Consensus 282 ~vs~mrpDi~~~deYVRnvt~ra~~vva~algv~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ 361 (975)
T COG5181 282 SVSSMRPDITSKDEYVRNVTGRAVGVVADALGVEELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLK 361 (975)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHH
Confidence 35678899999999999877777776544444556677777777665 788999999999988875433221 134566
Q ss_pred HHHHhHhcCCChhHHHHHHHHHHHH
Q 004394 178 TLKHLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
.+.++ +.|...-|..-+..+|..+
T Consensus 362 ci~~~-l~D~~~~vRi~tA~alS~l 385 (975)
T COG5181 362 CISKL-LKDRSRFVRIDTANALSYL 385 (975)
T ss_pred HHHHH-hhccceeeeehhHhHHHHH
Confidence 77776 5777766654444444433
No 81
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.98 E-value=1.5 Score=54.40 Aligned_cols=263 Identities=16% Similarity=0.195 Sum_probs=156.8
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhcCCh----------hhhHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhh---
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRV----------ANLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYH--- 164 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~----------~ei~e~l~~~v~~~L~d-~~pyVRKkAalal~kl~~--- 164 (756)
--+..-|..=+.|+.+.||+.||+|++.+-. --+.||+.|.+..++.| ...+||-+=|-|+.++-.
T Consensus 461 DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~ 540 (1431)
T KOG1240|consen 461 DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY 540 (1431)
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence 3778888899999999999999999998621 22579999999999999 667999876666655321
Q ss_pred ---------------hcCCc--ccCCC-------c----hHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHH
Q 004394 165 ---------------ISAPT--CIDAD-------F----PPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (756)
Q Consensus 165 ---------------~~p~~--~~~~~-------~----i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~ 216 (756)
-+|+. ..++. + -+.+..+ +.|+++.|..+-+..+..++.-=+. ...
T Consensus 541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sL-lsd~~~~Vkr~Lle~i~~LC~FFGk-----~ks 614 (1431)
T KOG1240|consen 541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSL-LSDSPPIVKRALLESIIPLCVFFGK-----EKS 614 (1431)
T ss_pred HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHhhh-----ccc
Confidence 11221 11111 1 1334454 7899999988877777766542111 000
Q ss_pred HHhhccHHHHHHHHHHhccCChhHHHHHHHHHHh---hC-CCChhHHHHHHHHHHHHhcccchHHHHHHHHHH---Hhhc
Q 004394 217 REALISKPVIYYLLNRIKEFSEWAQCLVLELVAK---YV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF---LHLT 289 (756)
Q Consensus 217 ~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~---y~-p~d~~e~~~il~~l~~~L~~~n~aVvleaik~i---i~l~ 289 (756)
. +. ++.+|+.-|++-++-+.+...+-+.- |. +.. ..+-++..+..-|+..-.+|+..|..++ +++.
T Consensus 615 N-D~----iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs--~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ 687 (1431)
T KOG1240|consen 615 N-DV----ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRS--VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG 687 (1431)
T ss_pred c-cc----hHHHHHHHhcCccHHHHHHHHhhccceEEEEeeee--HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence 0 11 46788888999966678888887763 22 221 1223556666667778889977666654 4433
Q ss_pred cccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcc-----cccccceeeecCCCCHHHHHHHHHHHHH
Q 004394 290 LSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI-----FASDYKHFYCQYNEPSYVKKLKLEMLTA 364 (756)
Q Consensus 290 ~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~l-----f~~~~~~f~c~~~dp~~IK~~kLdIL~~ 364 (756)
. +.+..+..+.....-||-..+.=||+.++..|..+.+.-..+ +.+-++-|+- .+. +...+.++|..
T Consensus 688 l----l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~irpfl~--~~v--~~i~s~~~Lls 759 (1431)
T KOG1240|consen 688 L----LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPLIRPFLE--RPV--IQIESKEVLLS 759 (1431)
T ss_pred c----cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehhhHHhhh--ccH--hhhcchHHHHH
Confidence 2 222223333433444666666678999999998887653321 1122222221 222 33344455554
Q ss_pred hcCCCCHHHHHHHHHHHh
Q 004394 365 VANESNTYEIVTELCEYA 382 (756)
Q Consensus 365 L~n~~Nv~~Iv~EL~~Yl 382 (756)
-+-+-=-..|.+.+.++-
T Consensus 760 clkpPVsRsv~~~l~r~~ 777 (1431)
T KOG1240|consen 760 CLKPPVSRSVFNQLLRWS 777 (1431)
T ss_pred HhcCCCcHHHHHHHHHHh
Confidence 444444455665555553
No 82
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=95.95 E-value=0.13 Score=63.26 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHhcCCCc---------cchhhhhhhhccCCChhhHHHHHHH-HHHccccCChH---HH-HHHHHHHH
Q 004394 42 DSKRELFKKVISYMTIGIDV---------SAVFGEMVMCSATSDIVLKKMCYLY-VGNYAKVNPDL---AL-LTINFLQR 107 (756)
Q Consensus 42 ~~kk~~lkKlI~~~~lG~Dv---------s~lF~~Vi~l~~s~d~~~KkL~YLy-l~~~~~~~~el---~l-L~iNtl~K 107 (756)
+-|..++.-++.+..+=.|+ ..+||++-.+...++-+.=|++|-- +..+|+.---. .. +-.|.+.+
T Consensus 477 ~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n 556 (1431)
T KOG1240|consen 477 DVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLN 556 (1431)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 45666776666666654443 2356665556555455555666632 11111110000 00 11122223
Q ss_pred HcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCC
Q 004394 108 DCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP 187 (756)
Q Consensus 108 DL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~ 187 (756)
|.++ . -+-....+-....+.+.+...+..+|.|+.|+||++-.-.+..++...-..--+.-+...|... |+|+
T Consensus 557 ~~ns---e---t~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTf-LNDk 629 (1431)
T KOG1240|consen 557 DPNS---E---TAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITF-LNDK 629 (1431)
T ss_pred Cccc---c---cccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHH-hcCc
Confidence 3333 2 1111111223345677778888999999999999998888888887654433233356788887 7999
Q ss_pred ChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC---ChhHHHHHHH
Q 004394 188 DPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL---DSNEIFDIMN 264 (756)
Q Consensus 188 d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~---d~~e~~~il~ 264 (756)
|....++=+-.+..++---+.- -+..-++.-|...+.+..|...++.|..|..++.. ......+|++
T Consensus 630 Dw~LR~aFfdsI~gvsi~VG~r----------s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~ 699 (1431)
T KOG1240|consen 630 DWRLRGAFFDSIVGVSIFVGWR----------SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQ 699 (1431)
T ss_pred cHHHHHHHHhhccceEEEEeee----------eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 9998876544443322111100 00111334456678999999999999999887643 3345678899
Q ss_pred HHHHHhcccchHHHHHHHHHHHhhc
Q 004394 265 LLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 265 ~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
.+.++|-|.|.=|..+++-.|....
T Consensus 700 ~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 700 DVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred hhhhheeCchHHHHHHHHHHHHHHH
Confidence 9999999999777666666665443
No 83
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.94 E-value=0.011 Score=41.59 Aligned_cols=30 Identities=23% Similarity=0.049 Sum_probs=25.5
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhh
Q 004394 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (756)
Q Consensus 136 l~~~v~~~L~d~~pyVRKkAalal~kl~~~ 165 (756)
++|.+.++++|++|.||..|+.|+.++.+.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 467889999999999999999999988763
No 84
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=95.72 E-value=4.8 Score=46.59 Aligned_cols=83 Identities=13% Similarity=0.145 Sum_probs=59.5
Q ss_pred HHccccCChHHH-HHHHHHHHHcCCCChHHHHHHHHHHhcCCh-------hhhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 004394 88 GNYAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLRV-------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (756)
Q Consensus 88 ~~~~~~~~el~l-L~iNtl~KDL~s~Np~iR~LALrtLs~I~~-------~ei~e~l~~~v~~~L~d~~pyVRKkAalal 159 (756)
..|+...-|..+ =+--.+...++++|=..|-.|.-++|++-. ..++....|.|....+|+.-.|+.+++-|+
T Consensus 353 qlfaq~~gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~ 432 (858)
T COG5215 353 QLFAQLKGDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCF 432 (858)
T ss_pred HHHHHHhhhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHH
Confidence 334433344333 233455667888898999999999999732 346777788888888999999999999999
Q ss_pred HHHhhhcCCcc
Q 004394 160 LKLYHISAPTC 170 (756)
Q Consensus 160 ~kl~~~~p~~~ 170 (756)
+++-..-|+.+
T Consensus 433 g~iad~va~~i 443 (858)
T COG5215 433 GAIADHVAMII 443 (858)
T ss_pred HHHHHHHHHhc
Confidence 98876555543
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=8.1 Score=46.42 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=46.7
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcC-CChhHHHHHHHHHHHHHhhc
Q 004394 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 145 ~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D-~d~~Vv~~Al~aL~eI~~~~ 206 (756)
+..=+.=||.|+.|+--+-++|...+...++.+.+..+ -+| .|+..+..++-.+.-+..++
T Consensus 33 ssTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL-~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 33 SSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVL-QRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH-hhccCCHHHHHHHHHHHHHHHhcC
Confidence 33445569999999999999998888767777777664 566 57888888888887776655
No 86
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=95.31 E-value=0.052 Score=48.87 Aligned_cols=66 Identities=18% Similarity=0.286 Sum_probs=54.7
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccC--CCchHHHHHhHhcCCChhHHHHH
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANC 195 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~--~~~i~~L~~lLL~D~d~~Vv~~A 195 (756)
..+..+.++++|.+++.|+++-||-.|+-|++.+.+..++.+.. +++.+.|.++ ..|.|+.|..+|
T Consensus 21 ~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl-~~D~d~~Vr~~a 88 (97)
T PF12755_consen 21 ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKL-SADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchhHHHHH
Confidence 56778999999999999999999999999999999887765521 3345566675 689999998887
No 87
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.14 E-value=8.9 Score=44.84 Aligned_cols=383 Identities=12% Similarity=0.057 Sum_probs=200.9
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCC-cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccH
Q 004394 145 KDNNSYVRTVAVIGVLKLYHISAP-TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (756)
Q Consensus 145 ~d~~pyVRKkAalal~kl~~~~p~-~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~ 223 (756)
.|+++.||++-+-+....+..+.+ .+ ..+.+...+.|-++.+..+.-|.+........+-... +....
T Consensus 27 ~d~~~~v~~~ml~a~~~~~~~~~~~~v--~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~---------d~~~~ 95 (569)
T KOG1242|consen 27 EDRRIDVRGNMLEAGEAAINQHGDQNV--LNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV---------DPRPI 95 (569)
T ss_pred CCcchhhHHhHHHHHHHHHHhhhHHHH--HHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc---------Ccchh
Confidence 789999999988888777765443 33 4455666665433444444444444434433322221 11223
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc--hhHHHHH
Q 004394 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--DVHQQVY 300 (756)
Q Consensus 224 ~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~-e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~--~~~~~~l 300 (756)
+++.++++.+..+++..|-....+|..+...... ....+.+.+..++.....+=...++.-+-.+-.... ...+
T Consensus 96 ~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~--- 172 (569)
T KOG1242|consen 96 SIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE--- 172 (569)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh---
Confidence 4688999999999999999999999888654332 234455556666665555555555544433322111 1111
Q ss_pred HHHHHHHHHhhcCCCcc-hHHHHHHHHHHHHhhCCcccccccc-----eeeecCCCCHHHHHHHHHHHHHhcCCC---CH
Q 004394 301 ERIKAPLLTLVSSGSPE-QSYAVLSHLHILVMRAPFIFASDYK-----HFYCQYNEPSYVKKLKLEMLTAVANES---NT 371 (756)
Q Consensus 301 ~rl~~~L~~LLss~~~n-irYvaL~~l~~L~~~~p~lf~~~~~-----~f~c~~~dp~~IK~~kLdIL~~L~n~~---Nv 371 (756)
..+...|.+.+.++.+- .|-.++-+.......-...|.+++. .|-|.+|...++|..+-+-..++.+.- -+
T Consensus 173 ~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 173 FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 11222344445432221 1213333333333332234555543 345777888899999888877776544 45
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-h----HHHHHHHHHhhhcCchhhHHHHHHHHHHHh--hCCCcc
Q 004394 372 YEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-N----AIVDRLLQFLEMEKDYVTAEALVLVKDLLR--KYPQWS 444 (756)
Q Consensus 372 ~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-~----~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~--~~p~~~ 444 (756)
+.++.-++.-+.+..=.-+..++.-+|.++.--|+. + ..|..+.+.|......|....+..+.++.+ .+|+++
T Consensus 253 K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~ 332 (569)
T KOG1242|consen 253 KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ 332 (569)
T ss_pred hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH
Confidence 566665554333321122344555555444433322 2 345556666665555555555555544432 356644
Q ss_pred hHHHHHHHHhhhccCCchhH-HHHHHhHh--ccCCCCCCC-hHHHHHHHhhhhccCChHHHHHH---HHHHhhHhhhcCC
Q 004394 445 HDCIAVVGSISSQNVQEPKA-KAALIWML--GEYSQDMQD-APYILESLTENWEEEPSAEVRLH---LLTAVMKCFFKRP 517 (756)
Q Consensus 445 ~~~~~~l~~l~~~~i~~p~a-k~a~iWiL--GEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~---lLtA~~Kl~~~~p 517 (756)
. ++..++ +.+.+|.. -..++-.+ ++|.+.++. +-.++-.++.+=..|.+..++.. +.--.+|+. ..|
T Consensus 333 ~----~ip~Ll-d~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv-eDp 406 (569)
T KOG1242|consen 333 K----IIPTLL-DALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV-EDP 406 (569)
T ss_pred H----HHHHHH-HHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh-cCH
Confidence 3 334443 44555552 22333344 456666654 33444444443333332555432 333445543 345
Q ss_pred hhhHHHHHHHHHh---hhcCCChHHHhHHHHHH
Q 004394 518 PETQKVLGAALAA---GLADFHQDVHDRALFYH 547 (756)
Q Consensus 518 ~e~~~~l~~vL~~---~~~d~d~dVrdRA~~Y~ 547 (756)
.+..+.+..++.. ...+..||+|.=|..=+
T Consensus 407 ~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 407 KDLAPFLPSLLPGLKENLDDAVPEVRAVAARAL 439 (569)
T ss_pred HHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHH
Confidence 5666677776653 34566899997665544
No 88
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.91 E-value=5.5 Score=50.91 Aligned_cols=368 Identities=14% Similarity=0.098 Sum_probs=190.7
Q ss_pred HHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH
Q 004394 136 LVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 136 l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
++---+.+-+|+ ...=||=||.++..+-....+... -..++++|++- -.|+|+.|..+-...-..+......
T Consensus 957 LVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY-~yDP~~~Vq~aM~sIW~~Li~D~k~---- 1031 (1702)
T KOG0915|consen 957 LVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRY-QYDPDKKVQDAMTSIWNALITDSKK---- 1031 (1702)
T ss_pred HHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhh-ccCCcHHHHHHHHHHHHHhccChHH----
Confidence 333445555554 467789999999999877655441 14467788886 6799999887665555444332111
Q ss_pred HHHHHHhhccHHHHHHHHHHhccCChhH-----HHHHHHHHHhhCCCChhHHHHHHH----------HHHHHhcccchHH
Q 004394 213 ASREREALISKPVIYYLLNRIKEFSEWA-----QCLVLELVAKYVPLDSNEIFDIMN----------LLEDRLQHANGAV 277 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~l~~~~~W~-----Qi~IL~lL~~y~p~d~~e~~~il~----------~l~~~L~~~n~aV 277 (756)
..+. .-..+++.|+..+ .+.+|- -..+.++|+. +...+...++-+ -+.+-.+.+..--
T Consensus 1032 -~vd~---y~neIl~eLL~~l-t~kewRVReasclAL~dLl~g--~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~ 1104 (1702)
T KOG0915|consen 1032 -VVDE---YLNEILDELLVNL-TSKEWRVREASCLALADLLQG--RPFDQVKEKLPELWEAAFRVMDDIKESVREAADKA 1104 (1702)
T ss_pred -HHHH---HHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1122344444433 357885 2334445543 222222222222 2222222222111
Q ss_pred HHHHHHHHHhhccc-cchhHHHHHHHHHHHHHH--hhcCCCcchHHHHHHHHHHHHhhCCcccccccc-eeeecCCCCHH
Q 004394 278 VLSTIKVFLHLTLS-MTDVHQQVYERIKAPLLT--LVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFYCQYNEPSY 353 (756)
Q Consensus 278 vleaik~ii~l~~~-~~~~~~~~l~rl~~~L~~--LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-~f~c~~~dp~~ 353 (756)
.-.-.|+++.+... ...-.++++.-+-+.|.. .+ |+-+++|-+.+..+..|+...|..+.+|.. .+.|+-+-
T Consensus 1105 ~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~--- 1180 (1702)
T KOG0915|consen 1105 ARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNA--- 1180 (1702)
T ss_pred HHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHH---
Confidence 11222333333322 111124444443333321 23 578999999999999999999998888874 22332110
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHH
Q 004394 354 VKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (756)
Q Consensus 354 IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i 433 (756)
-..+=..+ +.|+.-.-.+...+++.....=+.|-. ...+++-+++..-...+-.|.+-++
T Consensus 1181 -------------~s~lE~~v----LnYls~r~~~~e~ealDt~R~s~akss---pmmeTi~~ci~~iD~~vLeelip~l 1240 (1702)
T KOG0915|consen 1181 -------------YSELEPQV----LNYLSLRLINIETEALDTLRASAAKSS---PMMETINKCINYIDISVLEELIPRL 1240 (1702)
T ss_pred -------------ccccchHH----HHHHHHhhhhhHHHHHHHHHHhhhcCC---cHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00111111 223221112233344443332222321 2335555555554455677777777
Q ss_pred HHHHhhCCCcchH--HHHHHHHhhhccCCchhHHHHHHhHhccCCCCC-CChHHHHHHHhhhhccCChHHHHHHHHHHhh
Q 004394 434 KDLLRKYPQWSHD--CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVM 510 (756)
Q Consensus 434 ~~Il~~~p~~~~~--~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i-~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~ 510 (756)
.+++|..=..-.. |...++. +.-.||..+ +-...+++.+.-.+.+-. +.+|-+.=.|..
T Consensus 1241 ~el~R~sVgl~Tkvg~A~fI~~-----------------L~~r~~~emtP~sgKll~al~~g~~dRN-esv~kafAsAmG 1302 (1702)
T KOG0915|consen 1241 TELVRGSVGLGTKVGCASFISL-----------------LVQRLGSEMTPYSGKLLRALFPGAKDRN-ESVRKAFASAMG 1302 (1702)
T ss_pred HHHHhccCCCCcchhHHHHHHH-----------------HHHHhccccCcchhHHHHHHhhcccccc-HHHHHHHHHHHH
Confidence 7777764433211 1111111 111244333 346678888888888877 889999999999
Q ss_pred Hhhhc-CChhhHHHHHHHHHhhhcCCChHHHhHHHHHHHHhcCCHHHH
Q 004394 511 KCFFK-RPPETQKVLGAALAAGLADFHQDVHDRALFYHRLLQYNVSVA 557 (756)
Q Consensus 511 Kl~~~-~p~e~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~e~a 557 (756)
+++-- .|+++++++..++.....+.+..=+-++.....+.++..+..
T Consensus 1303 ~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~e~L 1350 (1702)
T KOG0915|consen 1303 YLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQEML 1350 (1702)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhHHHH
Confidence 98754 355788898888887664432211555544444555544443
No 89
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.83 E-value=0.8 Score=55.87 Aligned_cols=202 Identities=12% Similarity=0.082 Sum_probs=144.8
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcC-Ccc-cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p-~~~-~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
-.++..-+.+.+...+.|+++-=|+.|+-.+.+...-.+ +.. ...+....+....+.|.|..|+..|...|..|+..-
T Consensus 247 ~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~l 326 (815)
T KOG1820|consen 247 RVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKL 326 (815)
T ss_pred hhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhc
Confidence 345777778888999999999999999999999998666 222 112223333344467999999999999999998755
Q ss_pred ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004394 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (756)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii 286 (756)
..... -.....+..++..+++--.-..-.++.++..++-. .-..++++.+...+.+-|+.+--+|...+-
T Consensus 327 r~~~~--------~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns--~~l~~~~~~I~e~lk~knp~~k~~~~~~l~ 396 (815)
T KOG1820|consen 327 RPLFR--------KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS--TPLSKMSEAILEALKGKNPQIKGECLLLLD 396 (815)
T ss_pred chhhH--------HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence 43211 11233566777788887777887888888777643 335678899999999999999888877665
Q ss_pred hhccccc--hhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc-ccccc
Q 004394 287 HLTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASD 340 (756)
Q Consensus 287 ~l~~~~~--~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~-lf~~~ 340 (756)
....... ......+..+++.++...++.+.++|-++++.+..+...... .|...
T Consensus 397 r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~ 453 (815)
T KOG1820|consen 397 RKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKL 453 (815)
T ss_pred HHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4332111 122344566777888889899999999999999998887654 34433
No 90
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=94.69 E-value=14 Score=45.02 Aligned_cols=417 Identities=16% Similarity=0.143 Sum_probs=197.9
Q ss_pred HHHHHHccccCCh-HHHHHHHHHHHHcCCCChHHHHHHHHHHhcCCh----hhhHHHHHHHHHhhcCCCChHHHHHHHHH
Q 004394 84 YLYVGNYAKVNPD-LALLTINFLQRDCKDEDPMIRGLALRSLCSLRV----ANLVEYLVGPLGLGLKDNNSYVRTVAVIG 158 (756)
Q Consensus 84 YLyl~~~~~~~~e-l~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~----~ei~e~l~~~v~~~L~d~~pyVRKkAala 158 (756)
=++...|-...++ +=.-.-+.++.=++|.+|.+|-.+-+-++.+.. ......+.+....+..|...-||=.|.-+
T Consensus 220 glf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~ 299 (759)
T KOG0211|consen 220 GLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVES 299 (759)
T ss_pred hhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHH
Confidence 3444444444423 222345667777888889998888888777643 33445666677777788888888888888
Q ss_pred HHHHhhhcCCc-ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCC
Q 004394 159 VLKLYHISAPT-CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS 237 (756)
Q Consensus 159 l~kl~~~~p~~-~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~ 237 (756)
+..+.....+. =....+.+.+... .+|.+..|.........++...=+. . ..+. ...+ .+..++ .-.
T Consensus 300 ~~~l~~l~~~~~d~~~~~~~~l~~~-~~d~~~~v~~~~~~~~~~L~~~~~~-~----~~~~-~~~~-~~~~l~----~~~ 367 (759)
T KOG0211|consen 300 LVSLLDLLDDDDDVVKSLTESLVQA-VEDGSWRVSYMVADKFSELSSAVGP-S----ATRT-QLVP-PVSNLL----KDE 367 (759)
T ss_pred HHHHHHhcCCchhhhhhhhHHHHHH-hcChhHHHHHHHhhhhhhHHHHhcc-c----cCcc-cchh-hHHHHh----cch
Confidence 88777654332 1124556666665 5788887777666666665431110 0 0000 0011 111111 122
Q ss_pred hhH----HHHHHHHHHhhCCCC---hhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHh
Q 004394 238 EWA----QCLVLELVAKYVPLD---SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTL 310 (756)
Q Consensus 238 ~W~----Qi~IL~lL~~y~p~d---~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~L 310 (756)
+|- -..-.+-+..|...+ .--...++..+..+....|.-|--+.+..++.+.+..+ +.+.+.-+.+.+...
T Consensus 368 ~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~ 445 (759)
T KOG0211|consen 368 EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTISELLPLLIGN 445 (759)
T ss_pred hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCccccChhhhhh
Confidence 221 122222233332210 00112234444445545555554444444444432111 001111223334446
Q ss_pred hcCCCcchHHHHHHHHHHHHhhCCc-----ccccccceeeecCCCC-HHHHHHHHHHHHHhcCCCCHHHHHHHHH----H
Q 004394 311 VSSGSPEQSYAVLSHLHILVMRAPF-----IFASDYKHFYCQYNEP-SYVKKLKLEMLTAVANESNTYEIVTELC----E 380 (756)
Q Consensus 311 Lss~~~nirYvaL~~l~~L~~~~p~-----lf~~~~~~f~c~~~dp-~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~----~ 380 (756)
+++..++++--....+..+....+. +-+.++..+-++..|. .-+|..-++-+-.++...=..-.-+++. .
T Consensus 446 l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~ 525 (759)
T KOG0211|consen 446 LKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRT 525 (759)
T ss_pred cchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh
Confidence 6666666665555444443333221 1222333333333332 4555555555555555444333322222 3
Q ss_pred HhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHH-HHhhhcCc--hhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhc
Q 004394 381 YAANVDIPIARESIRAVGKIALQQYDVNAIVDRLL-QFLEMEKD--YVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQ 457 (756)
Q Consensus 381 Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll-~LL~~~~~--~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~ 457 (756)
|+.+...++++.+.+.+..++++|. .+|+...++ ++|...++ |..--+ + +.
T Consensus 526 ~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~~~i~k~L~~~~q~~y~~R~t-----------------~---l~----- 579 (759)
T KOG0211|consen 526 WLPDHVYSIREAAARNLPALVETFG-SEWARLEEIPKLLAMDLQDNYLVRMT-----------------T---LF----- 579 (759)
T ss_pred hhhhhHHHHHHHHHHHhHHHHHHhC-cchhHHHhhHHHHHHhcCcccchhhH-----------------H---HH-----
Confidence 4445556677777777777777776 556544332 33333332 111000 0 00
Q ss_pred cCCchhHHHHHHhHhccCCCCCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhc-CChhhHHHHHHHHHhhhcCCC
Q 004394 458 NVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFK-RPPETQKVLGAALAAGLADFH 536 (756)
Q Consensus 458 ~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~-~p~e~~~~l~~vL~~~~~d~d 536 (756)
+...++=++|. .+ ...+++-.+. .+...+.+.||.-..-.+-|+--. .++..+..+..++.....|.|
T Consensus 580 ------si~~la~v~g~---ei-~~~~Llp~~~-~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~ 648 (759)
T KOG0211|consen 580 ------SIHELAEVLGQ---EI-TCEDLLPVFL-DLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQE 648 (759)
T ss_pred ------HHHHHHHHhcc---HH-HHHHHhHHHH-HhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcc
Confidence 00011111211 00 0122222222 233333267776655544444211 123345566677777677888
Q ss_pred hHHHhHHHHHHHHhc
Q 004394 537 QDVHDRALFYHRLLQ 551 (756)
Q Consensus 537 ~dVrdRA~~Y~rLL~ 551 (756)
.|||=||..-...+.
T Consensus 649 ~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 649 LDVRYRAILAFGSIE 663 (759)
T ss_pred cchhHHHHHHHHHHH
Confidence 888888877665544
No 91
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=94.42 E-value=0.66 Score=52.26 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=102.8
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccc--hhhhhh----hhccC-CChhhHH
Q 004394 9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSA--VFGEMV----MCSAT-SDIVLKK 81 (756)
Q Consensus 9 ~~~~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~--lF~~Vi----~l~~s-~d~~~Kk 81 (756)
+++-...+..-....-++..|.+..++ +..+.+++++..++-++.-|--.-| .|.+++ +.++. .+...|+
T Consensus 272 ~~~~~~~p~~~~~~~~v~~~l~~~~g~---e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~ 348 (516)
T KOG2956|consen 272 DSMDQLTPNSVDQSALVADLLKEISGS---ERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKK 348 (516)
T ss_pred cchhhCCCCCcchhHHHHHHHHhccCc---cchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHH
Confidence 333333344434455666666664333 2346899999999999998854444 477653 55554 8899999
Q ss_pred HHHHHHHHccccCChH----HHHHHHHHHHHcCCCChHHHHHH----HHHHhcC--------------------------
Q 004394 82 MCYLYVGNYAKVNPDL----ALLTINFLQRDCKDEDPMIRGLA----LRSLCSL-------------------------- 127 (756)
Q Consensus 82 L~YLyl~~~~~~~~el----~lL~iNtl~KDL~s~Np~iR~LA----LrtLs~I-------------------------- 127 (756)
++.=.+.-..+.+|.- +-++|-.+..--.|.++-+.+.| +++++++
T Consensus 349 laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iK 428 (516)
T KOG2956|consen 349 LALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIK 428 (516)
T ss_pred HHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHH
Confidence 9998888887777653 44666666666566555433332 3333332
Q ss_pred ---------Chhh---hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHH
Q 004394 128 ---------RVAN---LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (756)
Q Consensus 128 ---------~~~e---i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~ 181 (756)
..++ +++.+.|.+.++..+.+.-|||+|+.|+.-+|..-. .+++.++|..
T Consensus 429 m~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG----~~~mePhL~~ 490 (516)
T KOG2956|consen 429 MLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG----MEEMEPHLEQ 490 (516)
T ss_pred HHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh----HHhhhhHhhh
Confidence 1122 456667777777777788888888888877776532 1334555554
No 92
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=94.38 E-value=4.1 Score=43.47 Aligned_cols=223 Identities=13% Similarity=0.174 Sum_probs=112.3
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHH----HHHHHhccCChhH-HHHHHHHH---Hh
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIY----YLLNRIKEFSEWA-QCLVLELV---AK 250 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~----~Ll~~l~~~~~W~-Qi~IL~lL---~~ 250 (756)
|..- |.+.|+.+++.|+..|.++...-|.. .++++.+. -+++++. .|. ....|+.+ .+
T Consensus 4 Lg~~-Ltsed~~~R~ka~~~Ls~vL~~lp~~----------~L~~~ev~~L~~F~~~rl~---D~~~~~~~l~gl~~L~~ 69 (262)
T PF14500_consen 4 LGEY-LTSEDPIIRAKALELLSEVLERLPPD----------FLSRQEVQVLLDFFCSRLD---DHACVQPALKGLLALVK 69 (262)
T ss_pred hhhh-hCCCCHHHHHHHHHHHHHHHHhCCHh----------hccHHHHHHHHHHHHHHhc---cHhhHHHHHHHHHHHHh
Confidence 4444 46677777777777777776543321 12222222 2233332 222 21223322 23
Q ss_pred hCCCChhHHHHHHHHHHHHh--cccchHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHhh-cCCCcchHHHHHHHH
Q 004394 251 YVPLDSNEIFDIMNLLEDRL--QHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLV-SSGSPEQSYAVLSHL 326 (756)
Q Consensus 251 y~p~d~~e~~~il~~l~~~L--~~~n~aVvleaik~ii~l~~~~-~~~~~~~l~rl~~~L~~LL-ss~~~nirYvaL~~l 326 (756)
...-..+...++++.+.... ++-..++.+.+-+++-.+.... ..++ ..-.....-++..+ ..+||.-=-++.+.+
T Consensus 70 ~~~~~~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~ 148 (262)
T PF14500_consen 70 MKNFSPESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLL 148 (262)
T ss_pred CcCCChhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 22223444555555554322 2222345555555444432211 1111 00011112233344 347888777788888
Q ss_pred HHHHhhCCc--ccccccceeee--------cCCCCHHHH--HHHHHHHHHhcC-CCCHHHHHHHHHHHhhhCCHHHHHHH
Q 004394 327 HILVMRAPF--IFASDYKHFYC--------QYNEPSYVK--KLKLEMLTAVAN-ESNTYEIVTELCEYAANVDIPIARES 393 (756)
Q Consensus 327 ~~L~~~~p~--lf~~~~~~f~c--------~~~dp~~IK--~~kLdIL~~L~n-~~Nv~~Iv~EL~~Yl~~~D~~~~~~~ 393 (756)
..+++..+. ..+.-.+.++| ..|||.-|. .+|..+.-.|+. +.=....+.-|++=+.+.....+.++
T Consensus 149 ~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~ 228 (262)
T PF14500_consen 149 KVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDS 228 (262)
T ss_pred HHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHH
Confidence 888777662 11111234445 246774444 444455555654 33345667777777777788899999
Q ss_pred HHHHHHHHhhcCC--hhHHHHHHHH
Q 004394 394 IRAVGKIALQQYD--VNAIVDRLLQ 416 (756)
Q Consensus 394 I~aIg~lA~k~~~--~~~~vd~Ll~ 416 (756)
.+.+..|+.+|+. ...++..+.+
T Consensus 229 L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 229 LQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 9999999999963 2344444444
No 93
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=94.37 E-value=0.4 Score=56.75 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=73.9
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHH
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~ 181 (756)
.+.+.+.....+...+-++|++||+++.+..+..+.+.+. +-...++++|..|+.|+-++-..+|+.+ .+.+..
T Consensus 448 ~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~v-----~~~l~~ 521 (574)
T smart00638 448 HELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAILALRNLAKRDPRKV-----QEVLLP 521 (574)
T ss_pred HHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchHH-----HHHHHH
Confidence 3444455556778888999999999999999999888876 3345678999999999999988888876 444555
Q ss_pred hHh-cCCChhHHHHHHHHHHHH
Q 004394 182 LML-NDPDPQVVANCLSALQEI 202 (756)
Q Consensus 182 lLL-~D~d~~Vv~~Al~aL~eI 202 (756)
.+. .+.++.|+.+|+.+|.+.
T Consensus 522 i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 522 IYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHcCCCCChHHHHHHHHHHHhc
Confidence 432 367899999999888774
No 94
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.34 E-value=1.2 Score=48.20 Aligned_cols=153 Identities=17% Similarity=0.178 Sum_probs=101.4
Q ss_pred HHHHHHHH-HHhhhCCHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHH
Q 004394 372 YEIVTELC-EYAANVDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIA 449 (756)
Q Consensus 372 ~~Iv~EL~-~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~ 449 (756)
..+++.|. -.+++.|..+++.+++.+|.++.-..+. ..++..+...++.+.+.+...++..+.|++..|+-..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~----- 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI----- 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh-----
Confidence 37787776 5667789999999999999999775543 4577888888876666777777888888887775321
Q ss_pred HHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhh-HHHHHHHH
Q 004394 450 VVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET-QKVLGAAL 528 (756)
Q Consensus 450 ~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~-~~~l~~vL 528 (756)
+.. ...+. .-.....+++.+.+.+..++ +++|......++||++..--.. ..++..++
T Consensus 100 -~~~-----~~~~~--------------~~~~~~~l~~~l~~~l~~~~-~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Ll 158 (298)
T PF12719_consen 100 -FDS-----ESDND--------------ESVDSKSLLKILTKFLDSEN-PELQAIAVEGLCKLLLSGRISDPPKVLSRLL 158 (298)
T ss_pred -ccc-----hhccC--------------ccchHhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 111 11111 12235566666666666666 8999999999999998754333 45666655
Q ss_pred Hhhh-c--CCChHHHhHHHHHHHHh
Q 004394 529 AAGL-A--DFHQDVHDRALFYHRLL 550 (756)
Q Consensus 529 ~~~~-~--d~d~dVrdRA~~Y~rLL 550 (756)
-.+- . ..|+.+||==-.+....
T Consensus 159 l~yF~p~t~~~~~LrQ~L~~Ffp~y 183 (298)
T PF12719_consen 159 LLYFNPSTEDNQRLRQCLSVFFPVY 183 (298)
T ss_pred HHHcCcccCCcHHHHHHHHHHHHHH
Confidence 4433 2 24677777433333333
No 95
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.30 E-value=3.4 Score=45.39 Aligned_cols=251 Identities=16% Similarity=0.135 Sum_probs=136.4
Q ss_pred hhhhhccCCChhhHHHHHHHHHHcc--ccCChHHHH--HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhH--------H
Q 004394 67 EMVMCSATSDIVLKKMCYLYVGNYA--KVNPDLALL--TINFLQRDCKDEDPMIRGLALRSLCSLRVANLV--------E 134 (756)
Q Consensus 67 ~Vi~l~~s~d~~~KkL~YLyl~~~~--~~~~el~lL--~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~--------e 134 (756)
.++++-.++|+..+|-.-=++.+.- +++-..++- .+..+..-+.+.|+-+|--+-+++++|.+..-. +
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep 250 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEP 250 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhccc
Confidence 3445555555555554333333322 222222111 145566677899999999999999999875532 2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc--CCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS--APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~--p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
-+++.+..++.|+++-|+--|.+|+..+-... .--+.+.+-++.+.++ +.++-.-.+.+.+..+..|.-+...
T Consensus 251 ~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~L-lqs~~~plilasVaCIrnisihplN---- 325 (550)
T KOG4224|consen 251 KLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVEL-LQSPMGPLILASVACIRNISIHPLN---- 325 (550)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHH-HhCcchhHHHHHHHHHhhcccccCc----
Confidence 37888999999999999999999987765421 1112356678888887 4655444455555556444332211
Q ss_pred HHHHHHhh-ccHHHHHHHHHHhcc-CChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccchHHHHHHHHHH
Q 004394 213 ASREREAL-ISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVF 285 (756)
Q Consensus 213 ~~~~~~~l-l~~~~~~~Ll~~l~~-~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~aVvleaik~i 285 (756)
..+ ++...++-|.+.|.- -+|-.||.....|..+..+....... -++.+..++....-+|.-+-.-||
T Consensus 326 -----e~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~ 400 (550)
T KOG4224|consen 326 -----EVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACI 400 (550)
T ss_pred -----ccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHH
Confidence 011 112223334443332 35668888888888776543332222 234555566555555554444444
Q ss_pred HhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHH
Q 004394 286 LHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (756)
Q Consensus 286 i~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~ 328 (756)
-.+.-+..+ +..+++ .+.+.|+-++.+.+.|+|=-+-.++.-
T Consensus 401 a~Lal~d~~-k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~N 443 (550)
T KOG4224|consen 401 AQLALNDND-KEALLDSGIIPILIPWTGSESEEVRGNAAAALIN 443 (550)
T ss_pred HHHHhcccc-HHHHhhcCCcceeecccCccchhhcccHHHHHHh
Confidence 433322111 111111 233444455555555565444444443
No 96
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=14 Score=46.27 Aligned_cols=207 Identities=14% Similarity=0.185 Sum_probs=136.4
Q ss_pred CChhHHHHHHHHHHhhCCCChh-HHHHHHHHHHHHhcccchHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHHHhhc
Q 004394 236 FSEWAQCLVLELVAKYVPLDSN-EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVYERIKAPLLTLVS 312 (756)
Q Consensus 236 ~~~W~Qi~IL~lL~~y~p~d~~-e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~--~~~~~~~~l~rl~~~L~~LLs 312 (756)
...+.+..+|+++....|.-++ ....+........+++++.|..-+-+++-.+... ......+-++-+-+.|..=++
T Consensus 628 ~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~q 707 (1176)
T KOG1248|consen 628 VASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQ 707 (1176)
T ss_pred hhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHh
Confidence 3677888999988877765333 3444444444556677889988888887766544 222223333445555555556
Q ss_pred CCCcchHHHHHHHHHHHHhhCC----ccccccc-ceeeecCCCCHHHHHHHHHHHHHhc---------CCCCHHHHHHHH
Q 004394 313 SGSPEQSYAVLSHLHILVMRAP----FIFASDY-KHFYCQYNEPSYVKKLKLEMLTAVA---------NESNTYEIVTEL 378 (756)
Q Consensus 313 s~~~nirYvaL~~l~~L~~~~p----~lf~~~~-~~f~c~~~dp~~IK~~kLdIL~~L~---------n~~Nv~~Iv~EL 378 (756)
+.+.-.|+-.|..+..|.+..| .++..-+ +.+.|..+.+.+-|+-+.++|+.|+ ++. ...+++|+
T Consensus 708 s~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~~~~lnef 786 (1176)
T KOG1248|consen 708 SSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP-ASAILNEF 786 (1176)
T ss_pred ccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc-hHHHHHHH
Confidence 6666789999999999998888 2333333 3445566777889999999999998 222 34566665
Q ss_pred HHHhhh---CCHHHHH-HHHHHHHHHHhhcCCh------hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc
Q 004394 379 CEYAAN---VDIPIAR-ESIRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW 443 (756)
Q Consensus 379 ~~Yl~~---~D~~~~~-~~I~aIg~lA~k~~~~------~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~ 443 (756)
+.-+.. .|..... -.|.+++.+...|.+. ..+++.+.-+|..+...+...+|-.++-.+.+.|+.
T Consensus 787 l~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 787 LSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH
Confidence 543322 1333222 2288888888877531 346666777777777788888888899888888874
No 97
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.85 E-value=7.4 Score=48.64 Aligned_cols=265 Identities=12% Similarity=0.118 Sum_probs=145.8
Q ss_pred HHHhcCCCccchhhhhhhhc-cCCChhhHHHHHHHHH----HccccCChHHHHHHHHHHH-HcCCCChHHHHHHHHHHhc
Q 004394 53 SYMTIGIDVSAVFGEMVMCS-ATSDIVLKKMCYLYVG----NYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCS 126 (756)
Q Consensus 53 ~~~~lG~Dvs~lF~~Vi~l~-~s~d~~~KkL~YLyl~----~~~~~~~el~lL~iNtl~K-DL~s~Np~iR~LALrtLs~ 126 (756)
|....+.|+...+.+-+... ++.|-..+.--|+.+. -.+...++-.+-..+++.. +-++.++-++.-|-|-|..
T Consensus 601 ~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~l~~v~~~~e~~~~~~vQkK~yrlL~~ 680 (1176)
T KOG1248|consen 601 YFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSKLFTVDPEFENSSSTKVQKKAYRLLEE 680 (1176)
T ss_pred HhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHHHHHhhHHhhccccHHHHHHHHHHHHH
Confidence 45556778877777766544 4444232222222221 1234444444444454444 3445588888877666655
Q ss_pred CC--------hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcC----CcccCCCchHHHHHhHhcCCChhHHHH
Q 004394 127 LR--------VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDPQVVAN 194 (756)
Q Consensus 127 I~--------~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p----~~~~~~~~i~~L~~lLL~D~d~~Vv~~ 194 (756)
+. ...-++++...+...+++.+.++|+.+.-|+..+|+..| +.+ +..++.+.=. ++|-|..-..+
T Consensus 681 l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~EvIL~-~Ke~n~~aR~~ 757 (1176)
T KOG1248|consen 681 LSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPEVILS-LKEVNVKARRN 757 (1176)
T ss_pred HhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHh-cccccHHHHhh
Confidence 42 345667777777777788889999999999999999988 222 2222222212 36778778899
Q ss_pred HHHHHHHHHh--hc--ccchhHHHHHHHhhccHHHHHHHHHHhcc--CCh--hH----HHHHHHHHHhhCC-CChhHHHH
Q 004394 195 CLSALQEIWS--LE--ASTSEEASREREALISKPVIYYLLNRIKE--FSE--WA----QCLVLELVAKYVP-LDSNEIFD 261 (756)
Q Consensus 195 Al~aL~eI~~--~~--~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~--~~~--W~----Qi~IL~lL~~y~p-~d~~e~~~ 261 (756)
|..+|.+|+. .. .+..+ . ...+...+..+.. .++ -. .+.+=.++..+.- .+.+...+
T Consensus 758 Af~lL~~i~~i~~~~d~g~e~--~--------~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~ 827 (1176)
T KOG1248|consen 758 AFALLVFIGAIQSSLDDGNEP--A--------SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEK 827 (1176)
T ss_pred HHHHHHHHHHHHhhhcccccc--h--------HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 9999999983 11 11110 0 0122222222211 011 11 2222233444432 24455678
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccchhH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~-~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~ 330 (756)
+++.+.-.|.+.+..|+-+||..+-.+....++.. ...++.+-+.+..++.....++|--+...+..|+
T Consensus 828 li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi 897 (1176)
T KOG1248|consen 828 LISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI 897 (1176)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999999998765554444421 1222333334444444333444433333333333
No 98
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.85 E-value=0.57 Score=57.10 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=97.8
Q ss_pred hhhhhhhhccCCChhhHHH-HHHHHHHccccCChHHHHHHHHHHHH---------c---CCCChHHHHHHHHHHhcCCh-
Q 004394 64 VFGEMVMCSATSDIVLKKM-CYLYVGNYAKVNPDLALLTINFLQRD---------C---KDEDPMIRGLALRSLCSLRV- 129 (756)
Q Consensus 64 lF~~Vi~l~~s~d~~~KkL-~YLyl~~~~~~~~el~lL~iNtl~KD---------L---~s~Np~iR~LALrtLs~I~~- 129 (756)
.||-|+|+++|+-.++|-+ +++-...++- ++.--. -|.|| + ..-++.-|++|.=.|+.|..
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~----dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n 587 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQA----DLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN 587 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHH----HHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc
Confidence 4999999999999999976 5666665553 332111 23344 1 22356889999888887632
Q ss_pred -----hh-hHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhcCCChhHHHHHHHHH
Q 004394 130 -----AN-LVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSAL 199 (756)
Q Consensus 130 -----~e-i~e~l~~~v~~~L~d-~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL 199 (756)
.+ +-..++......|+| +.|..|.-.++|+.+++.-+++.- .+....++|..+ |.|+-|.|.++|+.||
T Consensus 588 f~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~-LsD~vpEVRaAAVFAL 666 (1387)
T KOG1517|consen 588 FKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILL-LSDPVPEVRAAAVFAL 666 (1387)
T ss_pred cchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHH-hcCccHHHHHHHHHHH
Confidence 11 223455555666777 479999999999999999887642 234556888886 7999999999999999
Q ss_pred HHHHhh
Q 004394 200 QEIWSL 205 (756)
Q Consensus 200 ~eI~~~ 205 (756)
..+...
T Consensus 667 gtfl~~ 672 (1387)
T KOG1517|consen 667 GTFLSN 672 (1387)
T ss_pred HHHhcc
Confidence 988753
No 99
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.50 E-value=0.33 Score=43.28 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=54.7
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCCh-----hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~-----~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
-+...++++|+.+-+||-||..|.++-. ..-.+.+..-....|.|+++||==.|+-|+.-+...+|+.+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~v 78 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEV 78 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHH
Confidence 3566788899999999999999988622 22356777777888889999999999999888888888754
No 100
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=93.42 E-value=0.033 Score=44.21 Aligned_cols=53 Identities=26% Similarity=0.216 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHhcCCChhHHHHHHHHHHHH
Q 004394 149 SYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 149 pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
|.||..|+.|+..+....++... .++.++.|..+ ++|+++.|..+|+.+|..|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~-L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPL-LQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHH-TTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHhcC
Confidence 67999999999987655555431 14456777776 6899999999999988653
No 101
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.40 E-value=5.8 Score=45.12 Aligned_cols=211 Identities=18% Similarity=0.191 Sum_probs=118.1
Q ss_pred hhHHHHHHHHHHccccCChHHH----HHHHHHHHH-cCCCChHHHHHHHHHHhcCChh----hhHHHHHHHHHhhc-CCC
Q 004394 78 VLKKMCYLYVGNYAKVNPDLAL----LTINFLQRD-CKDEDPMIRGLALRSLCSLRVA----NLVEYLVGPLGLGL-KDN 147 (756)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~el~l----L~iNtl~KD-L~s~Np~iR~LALrtLs~I~~~----ei~e~l~~~v~~~L-~d~ 147 (756)
..+++++++...+..-+++..+ -.++.+.+. +...++..|-.|++.+|.+.+. +..+.+...+...+ ...
T Consensus 163 ~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~ 242 (415)
T PF12460_consen 163 QQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSE 242 (415)
T ss_pred ccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccC
Confidence 5788888888877766665432 233444444 4556799999999999998554 23344444444444 344
Q ss_pred ChHHHHHHHHHHHH-----HhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhcc
Q 004394 148 NSYVRTVAVIGVLK-----LYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALIS 222 (756)
Q Consensus 148 ~pyVRKkAalal~k-----l~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~ 222 (756)
.+--|..++..+.. +.|.+|.. .++.+.|.++ +.|++ +-..|..++.-+....+....+.+.....++.
T Consensus 243 ~~~~~~~~~~~~~Wi~KaLv~R~~~~~---~~~~~~L~~l-L~~~~--~g~~aA~~f~il~~d~~~~l~~~~~a~vklLy 316 (415)
T PF12460_consen 243 DSELRPQALEILIWITKALVMRGHPLA---TELLDKLLEL-LSSPE--LGQQAAKAFGILLSDSDDVLNKENHANVKLLY 316 (415)
T ss_pred CcchhHHHHHHHHHHHHHHHHcCCchH---HHHHHHHHHH-hCChh--hHHHHHHHHhhHhcCcHHhcCccccchhhhHH
Confidence 55556555555433 44566654 4678888887 56643 33334444544443312110000111111222
Q ss_pred HH-----HHHHHHHHhccCChhHHHHHHHHHHhhCCCCh-----hHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc
Q 004394 223 KP-----VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (756)
Q Consensus 223 ~~-----~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~-----~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~ 292 (756)
|| ++.+|++.....+.=.+...|..|....+.-| .+..+++..+..-|...|..|..++..++..+-...
T Consensus 317 kQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 317 KQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 22 34455555555444355555555555443333 245567777777787788888888888877665443
Q ss_pred ch
Q 004394 293 TD 294 (756)
Q Consensus 293 ~~ 294 (756)
++
T Consensus 397 ~~ 398 (415)
T PF12460_consen 397 PE 398 (415)
T ss_pred HH
Confidence 33
No 102
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=93.39 E-value=0.6 Score=54.46 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=91.8
Q ss_pred ChHHHHHHHHHHhcC--ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChh
Q 004394 113 DPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (756)
Q Consensus 113 Np~iR~LALrtLs~I--~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~ 190 (756)
++-..-||-..+... .-|++.+..+..+..++.|.+.-||+.|+-++..+++-+|+.+ ....+.|..+ |.-.|+.
T Consensus 35 ~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v--~kvaDvL~Ql-L~tdd~~ 111 (556)
T PF05918_consen 35 SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV--SKVADVLVQL-LQTDDPV 111 (556)
T ss_dssp -HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--HHHHHHHHHH-TT---HH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--hHHHHHHHHH-HhcccHH
Confidence 455666666666664 5689999999999999999999999999999999999999888 6678888887 6777888
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc---cCChhHHHHHHHHHHhhC-CC-----C-hhHHH
Q 004394 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK---EFSEWAQCLVLELVAKYV-PL-----D-SNEIF 260 (756)
Q Consensus 191 Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~---~~~~W~Qi~IL~lL~~y~-p~-----d-~~e~~ 260 (756)
.+..+=.+|.++...+|. ..+.-|++.+. ..++-...++|++|.... +- . .+|.+
T Consensus 112 E~~~v~~sL~~ll~~d~k---------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e 176 (556)
T PF05918_consen 112 ELDAVKNSLMSLLKQDPK---------------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEME 176 (556)
T ss_dssp HHHHHHHHHHHHHHH-HH---------------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHH
T ss_pred HHHHHHHHHHHHHhcCcH---------------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHH
Confidence 777777788888776653 13444555443 457778888998886432 11 1 13444
Q ss_pred H-HHHHHHHHhcc
Q 004394 261 D-IMNLLEDRLQH 272 (756)
Q Consensus 261 ~-il~~l~~~L~~ 272 (756)
+ +++.+...|+.
T Consensus 177 ~~i~~~ikkvL~D 189 (556)
T PF05918_consen 177 EFIVDEIKKVLQD 189 (556)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHh
Confidence 3 44556666654
No 103
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=5.4 Score=51.97 Aligned_cols=221 Identities=18% Similarity=0.134 Sum_probs=122.5
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCC----hhh-hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCC
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLR----VAN-LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDAD 174 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~----~~e-i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~ 174 (756)
++.--+..++..+||..|+-|-.+++.+. .+. +.+..-..++++-+-.+|+-|---.+++..+++........+.
T Consensus 876 ~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh 955 (2067)
T KOG1822|consen 876 SALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH 955 (2067)
T ss_pred HHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh
Confidence 55666778889999999999988888862 222 3333334455544555666666677777777776555543333
Q ss_pred chH---HHHHhHhcCCCh-hHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 004394 175 FPP---TLKHLMLNDPDP-QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK 250 (756)
Q Consensus 175 ~i~---~L~~lLL~D~d~-~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~ 250 (756)
+.. .+..+ -.|+.+ .|...++.++.-|.......+ +.++- + ...|+-.+.-..|-..+.+.+...+
T Consensus 956 l~t~v~illal-~~Ds~~p~VqtwSL~al~~i~~s~~p~~-------~~~ve-~-tlsl~~~lLls~p~~~~ev~q~~~R 1025 (2067)
T KOG1822|consen 956 LNTSVSILLAL-ATDSTSPVVQTWSLHALALILDSSGPMF-------RVLVE-P-TLSLCLKLLLSVPTSHVEVHQCYNR 1025 (2067)
T ss_pred cccHHHHHHHH-hhcCCCchhhhhHHHHHHHHHcCCCcee-------hhhHH-H-HHHHHHHHcCCCCcchhhhhhhhcc
Confidence 443 66665 467655 899999999998876443221 11111 1 1222322333344455555544444
Q ss_pred hCCCChhH------------------HHH-HH----HHHHHHhcccchHHHHHHHHHHHhhccccc-hhHHHHHHHHHHH
Q 004394 251 YVPLDSNE------------------IFD-IM----NLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQQVYERIKAP 306 (756)
Q Consensus 251 y~p~d~~e------------------~~~-il----~~l~~~L~~~n~aVvleaik~ii~l~~~~~-~~~~~~l~rl~~~ 306 (756)
..-.+..+ .-. +- -...-.+.|.++-|.-++++++-++.-..+ .+. ++.++..
T Consensus 1026 ~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~ 1102 (2067)
T KOG1822|consen 1026 CFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQ 1102 (2067)
T ss_pred ccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHH
Confidence 32211111 000 10 011113456678888899999877643222 111 2445666
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHHhhC
Q 004394 307 LLTLVSSGSPEQSYAVLSHLHILVMRA 333 (756)
Q Consensus 307 L~~LLss~~~nirYvaL~~l~~L~~~~ 333 (756)
|..+|+++.--.|-..+..+.+++++.
T Consensus 1103 L~~~l~s~~~i~r~~~~~clrql~~Re 1129 (2067)
T KOG1822|consen 1103 LCSLLSSSYLILRRASFSCLRQLVQRE 1129 (2067)
T ss_pred HHHHhcchhhhhhhhHHhhhhHHhHHH
Confidence 777787654334444455566666664
No 104
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.26 E-value=4.9 Score=40.49 Aligned_cols=152 Identities=22% Similarity=0.225 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhh-c------------CCcc-cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHH
Q 004394 151 VRTVAVIGVLKLYHI-S------------APTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (756)
Q Consensus 151 VRKkAalal~kl~~~-~------------p~~~-~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~ 216 (756)
||-.|..|+.-+.+. + |+.. ........|...++.|+++.|..+|+.++..+.... +
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gs-k-------- 72 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGS-K-------- 72 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHcc-H--------
Confidence 566666666666655 2 3320 011223344455689999999999999999997532 1
Q ss_pred HHhhccHHHHHHHHHH---hccCChhHHHHHHHHHHhhCCCChhHHH---HHHHHHHHHhcc-cchHHHHHHHHHHHhh-
Q 004394 217 REALISKPVIYYLLNR---IKEFSEWAQCLVLELVAKYVPLDSNEIF---DIMNLLEDRLQH-ANGAVVLSTIKVFLHL- 288 (756)
Q Consensus 217 ~~~ll~~~~~~~Ll~~---l~~~~~W~Qi~IL~lL~~y~p~d~~e~~---~il~~l~~~L~~-~n~aVvleaik~ii~l- 288 (756)
+.+..--+. -..|.++. ...+. .+-..+...|++ .+.+++-++.|++-.+
T Consensus 73 -------~~L~~Ae~~~~~~~sFtslS---------------~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv 130 (182)
T PF13251_consen 73 -------PFLAQAEESKGPSGSFTSLS---------------STLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLV 130 (182)
T ss_pred -------HHHHHHHhcCCCCCCcccHH---------------HHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 111100000 00112211 11111 222344445555 4567777777766544
Q ss_pred --ccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC
Q 004394 289 --TLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (756)
Q Consensus 289 --~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p 334 (756)
+++. .+...++.+++..+..++.++|++++-.+|-.+..++...|
T Consensus 131 ~~tPY~-rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 131 QATPYH-RLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred ccCChh-hcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 4432 24456677777778888888999999999999988887654
No 105
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=93.05 E-value=0.92 Score=45.76 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=72.7
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCChhhhH--HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLV--EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~--e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
.+.+.+-+.++|..+|-.|++.+..+-..-++ -..+|.+..+..|++++||++|...+..++.++|+.+. ..+.+-+
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~-~~~~~gi 88 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE-SRYSEGI 88 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH-HHHHHHH
Confidence 45666778899999999999999987555544 24578888999999999999999999999999998873 2333322
Q ss_pred H------HhHhcCCChhH---HHHHHHHHHHHHh
Q 004394 180 K------HLMLNDPDPQV---VANCLSALQEIWS 204 (756)
Q Consensus 180 ~------~lLL~D~d~~V---v~~Al~aL~eI~~ 204 (756)
+ ..+..|..... ..+.+..++++..
T Consensus 89 ~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~ 122 (187)
T PF12830_consen 89 RLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLR 122 (187)
T ss_pred HHHHHHHHHhcCCccccccccchHHHHHHHHHHh
Confidence 2 11122333222 5566667777765
No 106
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.94 E-value=8.8 Score=41.54 Aligned_cols=104 Identities=19% Similarity=0.268 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhc--CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccC----
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCS--LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID---- 172 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~--I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~---- 172 (756)
-+.-+-+..-++++++.+|..|++++|- +-..+++..-++-+.+.+...++.||-+|+-++.-+...++-...+
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~ 105 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD 105 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence 4556667788999999999999999875 5667888888888888887679999999999999988876533311
Q ss_pred -------CCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 173 -------ADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 173 -------~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
..+.+.+.+. +.+.|+.+.+.|+-.+..+.
T Consensus 106 ~~~~~~~~~l~~~l~~~-l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 106 NDESVDSKSLLKILTKF-LDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred cCccchHhHHHHHHHHH-HhcCCHHHHHHHHHHHHHHH
Confidence 2345567776 56778888888877776664
No 107
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.80 E-value=1.3 Score=43.89 Aligned_cols=121 Identities=20% Similarity=0.217 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC-Ccccccccceee------ecCCCCHHHHHHHHHHHHHhcCCCCHH
Q 004394 300 YERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA-PFIFASDYKHFY------CQYNEPSYVKKLKLEMLTAVANESNTY 372 (756)
Q Consensus 300 l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~-p~lf~~~~~~f~------c~~~dp~~IK~~kLdIL~~L~n~~Nv~ 372 (756)
+.+...-+.++|+++++.-|+.|+..+..+++.. ++.|..|...++ ...++|..++..++..|..|
T Consensus 23 l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l------- 95 (165)
T PF08167_consen 23 LHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRL------- 95 (165)
T ss_pred HHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-------
Confidence 3455555778999999999999999999999987 677766654332 23456666666666655544
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch
Q 004394 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH 445 (756)
Q Consensus 373 ~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~ 445 (756)
..+++. -+++.|+... |....++..++++++. .++..+++..+..++..||....
T Consensus 96 ------~~~~~~-~p~l~Rei~t---------p~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 96 ------FDLIRG-KPTLTREIAT---------PNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred ------HHHhcC-CCchHHHHhh---------ccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc
Confidence 344333 2233333211 1223456677777775 67888999999999999997643
No 108
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.23 E-value=0.67 Score=41.33 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=54.7
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcC-CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p-~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
+..+..-+.|+.+.||--|..-+.++.+... .....+.....+.+. +.|+|+-|-.||+..|..++...|
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~-L~d~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQ-LKDEDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHCh
Confidence 3456667899999999999999999998766 332224455666665 799999999999999999987554
No 109
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.18 E-value=5.6 Score=47.39 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=84.3
Q ss_pred HHHHhcCCCccchhhhhhhhccC-CChhhHHHH--HHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh--c
Q 004394 52 ISYMTIGIDVSAVFGEMVMCSAT-SDIVLKKMC--YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLC--S 126 (756)
Q Consensus 52 I~~~~lG~Dvs~lF~~Vi~l~~s-~d~~~KkL~--YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs--~ 126 (756)
+.+.|+|.--...+-++....+- +.-.++|=. -+++..|.++ |.+ =+-+.+=+.|.||+.|.--.-+++ .
T Consensus 473 MGl~mlGt~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq--e~A---d~lI~el~~dkdpilR~~Gm~t~alAy 547 (929)
T KOG2062|consen 473 MGLLMLGTANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ--EDA---DPLIKELLRDKDPILRYGGMYTLALAY 547 (929)
T ss_pred hhhHhhCcCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh--hhh---HHHHHHHhcCCchhhhhhhHHHHHHHH
Confidence 34566776666667777665443 333344433 3445556543 322 344444456679999964433332 2
Q ss_pred CCh--hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 127 LRV--ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 127 I~~--~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
.++ ...+..+ +.=..+|.+..|||.|++|+.-+.-.+|+.+ +. ..++|-..-||.|...|..+|.-.+.
T Consensus 548 ~GTgnnkair~l---Lh~aVsD~nDDVrRaAVialGFVl~~dp~~~--~s----~V~lLses~N~HVRyGaA~ALGIaCA 618 (929)
T KOG2062|consen 548 VGTGNNKAIRRL---LHVAVSDVNDDVRRAAVIALGFVLFRDPEQL--PS----TVSLLSESYNPHVRYGAAMALGIACA 618 (929)
T ss_pred hccCchhhHHHh---hcccccccchHHHHHHHHHheeeEecChhhc--hH----HHHHHhhhcChhhhhhHHHHHhhhhc
Confidence 222 2222222 1223579999999999999999999999887 22 33454456799999988888876554
No 110
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=91.32 E-value=0.93 Score=47.74 Aligned_cols=91 Identities=22% Similarity=0.226 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
+||.|..-+.+...++|--+--++|.+..+.-++.+...+.. .-.+|+||--|+-|+..+-. ++-++.|+
T Consensus 188 aI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d--~~E~pMVRhEaAeALGaIa~--------e~~~~vL~ 257 (289)
T KOG0567|consen 188 AINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLD--ETEHPMVRHEAAEALGAIAD--------EDCVEVLK 257 (289)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHh--hhcchHHHHHHHHHHHhhcC--------HHHHHHHH
Confidence 678899999999999999999999999999877766555444 34689999999999987654 44577888
Q ss_pred HhHhcCCChhHHHHHHHHHHHH
Q 004394 181 HLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
+. ++|.++.|.-+|..+|.-+
T Consensus 258 e~-~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 258 EY-LGDEERVVRESCEVALDML 278 (289)
T ss_pred HH-cCCcHHHHHHHHHHHHHHH
Confidence 87 7999999888888777544
No 111
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.30 E-value=3.5 Score=48.69 Aligned_cols=138 Identities=20% Similarity=0.216 Sum_probs=92.9
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhc---CChhh--------hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCS---LRVAN--------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP 168 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~---I~~~e--------i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~ 168 (756)
|.-..+-+.|+-+|..+|..|+..+-. |+.|+ +++--...+.++|.|+-|.||..|+.++.|++..+=+
T Consensus 174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999888766 34444 4566677889999999999999999999998876533
Q ss_pred cccC---CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHH----hccCChhHH
Q 004394 169 TCID---ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR----IKEFSEWAQ 241 (756)
Q Consensus 169 ~~~~---~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~----l~~~~~W~Q 241 (756)
.+.. .+....+.+-|-.|....|..+.+.-|.+|... |. | .+++..+|.+ +.+.++-..
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~-----s--------h~~le~~Lpal~~~l~D~se~VR 319 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PL-----S--------HPLLEQLLPALRYSLHDNSEKVR 319 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-cc-----c--------hhHHHHHHHhcchhhhccchhHH
Confidence 3321 112222222235678888999998888888753 21 1 1233344433 345566666
Q ss_pred HHHHHHHHhh
Q 004394 242 CLVLELVAKY 251 (756)
Q Consensus 242 i~IL~lL~~y 251 (756)
+...++|.+.
T Consensus 320 vA~vd~ll~i 329 (1005)
T KOG1949|consen 320 VAFVDMLLKI 329 (1005)
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 112
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=58 Score=42.30 Aligned_cols=271 Identities=14% Similarity=0.103 Sum_probs=143.5
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhH--hcCCChhHHHHHHHHHHHHHhhcccch
Q 004394 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM--LNDPDPQVVANCLSALQEIWSLEASTS 210 (756)
Q Consensus 133 ~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lL--L~D~d~~Vv~~Al~aL~eI~~~~~~~~ 210 (756)
...++|-+-|-=-||++-|+.. ...+-+..-.++..+.++-+-+.+.++| +.++--.|.-+++.||..+.+..|...
T Consensus 996 l~kLIPrLyRY~yDP~~~Vq~a-M~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen 996 LKKLIPRLYRYQYDPDKKVQDA-MTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred HHHhhHHHhhhccCCcHHHHHH-HHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence 3344444445446888888863 2223333333433333333445555553 357888999999999999987655311
Q ss_pred -hHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC-----CCChhHHHHHHHHHHHHhc-----ccchHHHH
Q 004394 211 -EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-----PLDSNEIFDIMNLLEDRLQ-----HANGAVVL 279 (756)
Q Consensus 211 -~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~-----p~d~~e~~~il~~l~~~L~-----~~n~aVvl 279 (756)
.+..|+.|. .+.|..+-+++.--=.--+..+.|++.+ +.+...+..+++.+.|.|- |.-.+|.-
T Consensus 1075 ~~e~lpelw~-----~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1075 VKEKLPELWE-----AAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 111222321 1223333333322122234444444433 3455567778888888764 34467888
Q ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCC-cchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHH
Q 004394 280 STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS-PEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLK 358 (756)
Q Consensus 280 eaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~-~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~k 358 (756)
-++++++.+..+....-...+.++.+.|++..+.-+ .-+-|++++....=.. .+..... -.-.+-|. ..+
T Consensus 1150 ~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e----alDt~R~--s~aksspm---meT 1220 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETE----ALDTLRA--SAAKSSPM---MET 1220 (1702)
T ss_pred HHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHH----HHHHHHH--hhhcCCcH---HHH
Confidence 899999998765433212234567777888777544 3457888887321111 1100000 00012221 455
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHh
Q 004394 359 LEMLTAVANESNTYEIVTELCEYAAN-VDIPIARESIRAVGKIALQQY-DVNAIVDRLLQFL 418 (756)
Q Consensus 359 LdIL~~L~n~~Nv~~Iv~EL~~Yl~~-~D~~~~~~~I~aIg~lA~k~~-~~~~~vd~Ll~LL 418 (756)
++.+..-.|.+-.++++.++.+-++. +.-.-+.-+..-|..++.+++ +.+.|...++..+
T Consensus 1221 i~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al 1282 (1702)
T KOG0915|consen 1221 INKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRAL 1282 (1702)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHH
Confidence 66666666666666777777776654 333334444555556666665 3344445555443
No 113
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=91.16 E-value=0.79 Score=46.63 Aligned_cols=131 Identities=17% Similarity=0.107 Sum_probs=86.9
Q ss_pred hhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCC-Ch-HHHHHHHHHHhcCChhhhHHHHHHHHHhhcC
Q 004394 68 MVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE-DP-MIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (756)
Q Consensus 68 Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~-Np-~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~ 145 (756)
+..+..+..++.|-++++++....+...+- .++.+.+-+.+- |- .+=++|-+.++.+.... +.+.+.+.+-+.
T Consensus 56 ~~~L~~~~~~E~~~la~~il~~~~~~~~~~---~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~--~~~~~~~~~W~~ 130 (213)
T PF08713_consen 56 ADELWESGYREERYLALLILDKRRKKLTEE---DLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH--PEALELLEKWAK 130 (213)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCGGG--HH---HHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH--GGHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHhHHHhhhhhHH---HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh--HHHHHHHHHHHh
Confidence 345778888888888888887665443322 344455544432 32 44466666666653322 445667788889
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
+.++++||.|+.+.++.++. +.. ..+.+.+... +.|++..|.-+.--+|.++...+|+
T Consensus 131 s~~~w~rR~~~v~~~~~~~~--~~~--~~~l~~~~~~-~~d~~~~vq~ai~w~L~~~~~~~~~ 188 (213)
T PF08713_consen 131 SDNEWVRRAAIVMLLRYIRK--EDF--DELLEIIEAL-LKDEEYYVQKAIGWALREIGKKDPD 188 (213)
T ss_dssp CSSHHHHHHHHHCTTTHGGG--CHH--HHHHHHHHHC-TTGS-HHHHHHHHHHHHHHCTT-HH
T ss_pred CCcHHHHHHHHHHHHHHHHh--cCH--HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhCHH
Confidence 99999999999999887776 222 3345566665 6899999999988999999876653
No 114
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=90.85 E-value=3.7 Score=43.37 Aligned_cols=58 Identities=29% Similarity=0.279 Sum_probs=49.7
Q ss_pred HHHHHHHHcCC--CChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 004394 101 TINFLQRDCKD--EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (756)
Q Consensus 101 ~iNtl~KDL~s--~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl 162 (756)
+|.+++|-|.+ .||++|..|..+||.|.+++-++ .+++.+.|+.+.||+.+..++=-+
T Consensus 219 ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e~~~~----vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 219 AIPSLIKVLLDETEHPMVRHEAAEALGAIADEDCVE----VLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCHHHHH----HHHHHcCCcHHHHHHHHHHHHHHH
Confidence 57888888876 58999999999999999987655 578889999999999999887443
No 115
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=90.85 E-value=7.9 Score=47.18 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=160.8
Q ss_pred ccchhhhhhhhccCCChhhHHHHHHHHHHccccCC--hHHHHHHHHHHHHcCCCChHHHHHHH-------HHHhcCChhh
Q 004394 61 VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP--DLALLTINFLQRDCKDEDPMIRGLAL-------RSLCSLRVAN 131 (756)
Q Consensus 61 vs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~--el~lL~iNtl~KDL~s~Np~iR~LAL-------rtLs~I~~~e 131 (756)
.+..++.+..++..++...|..-=...+.....-+ ...-...--+..-++|..+.+|..-+ ..++.++..-
T Consensus 396 ~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~ 475 (759)
T KOG0211|consen 396 DSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGIST 475 (759)
T ss_pred hhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchh
Confidence 34456666667777776666543333333321111 11111122233345555666665544 4555567777
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
..+.+.+.+..+-.|.+.-||.+..-.+..+....-..+.++.+.+.+..- +.|....+.-+|..-+..+...-+..
T Consensus 476 ~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~-l~d~v~~Ir~~aa~~l~~l~~~~G~~-- 552 (759)
T KOG0211|consen 476 VSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTW-LPDHVYSIREAAARNLPALVETFGSE-- 552 (759)
T ss_pred hhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhh-hhhhHHHHHHHHHHHhHHHHHHhCcc--
Confidence 888899999998889989999888877766665333222233444444444 45667778777777777776544421
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 004394 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL--DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~--d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
|. . ...+.+++....+.+=|....++..+..+.+- .+-..++++..+..+..+..+-|-+.++|.+-.+.
T Consensus 553 ------w~-~-~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 553 ------WA-R-LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred ------hh-H-HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 11 1 12567788877777778888888888766542 33334668888888888899999999999887665
Q ss_pred cccchhHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 290 LSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 290 ~~~~~~~~~~l-~rl~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
+.... ... +.+.+.+.+|..+.+.++||.+..+...+..
T Consensus 625 ~~L~~---~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 625 KLLDE---SVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hhcch---HHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 43211 112 2344556677778899999999998876654
No 116
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.75 E-value=2.4 Score=50.01 Aligned_cols=150 Identities=22% Similarity=0.274 Sum_probs=100.2
Q ss_pred ChhhhH-HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cCCccc--CCCc----hHHHHHhHhcCCChhHHHHHHHHH
Q 004394 128 RVANLV-EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCI--DADF----PPTLKHLMLNDPDPQVVANCLSAL 199 (756)
Q Consensus 128 ~~~ei~-e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p~~~~--~~~~----i~~L~~lLL~D~d~~Vv~~Al~aL 199 (756)
++++|+ .-.-|.+-++|+-+|..||..|+.-...+|-+ +|+.-. .... ...+.++ |.|+-|+|.+.|+--+
T Consensus 166 gVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~L-L~d~~p~VRS~a~~gv 244 (1005)
T KOG1949|consen 166 GVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSL-LEDPYPMVRSTAILGV 244 (1005)
T ss_pred hHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHH
Confidence 566766 44456678999999999999999999999964 677621 0111 2457776 7999999999998777
Q ss_pred HHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhcc-----CChhHHHHHHHHHHhh--CCCChhHHHHHHHHHHHHhcc
Q 004394 200 QEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-----FSEWAQCLVLELVAKY--VPLDSNEIFDIMNLLEDRLQH 272 (756)
Q Consensus 200 ~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~-----~~~W~Qi~IL~lL~~y--~p~d~~e~~~il~~l~~~L~~ 272 (756)
+.+.. ..|.++.+.++..|+..+.+ ..-=..+.+.+-|... .|..-...+.++.++...|+.
T Consensus 245 ~k~~s-----------~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D 313 (1005)
T KOG1949|consen 245 CKITS-----------KFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHD 313 (1005)
T ss_pred HHHHH-----------HHHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhc
Confidence 66642 35667777777788775432 1223455566655543 343333344556666666777
Q ss_pred cchHHHHHHHHHHHhhc
Q 004394 273 ANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 273 ~n~aVvleaik~ii~l~ 289 (756)
++..|..+++..++.+.
T Consensus 314 ~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 314 NSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 77788888887776654
No 117
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=90.43 E-value=23 Score=43.66 Aligned_cols=104 Identities=17% Similarity=0.201 Sum_probs=77.4
Q ss_pred HHHHHHHHHcC-CCChHHHHHHHHHHhcC----ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc-cCC
Q 004394 100 LTINFLQRDCK-DEDPMIRGLALRSLCSL----RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-IDA 173 (756)
Q Consensus 100 L~iNtl~KDL~-s~Np~iR~LALrtLs~I----~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~-~~~ 173 (756)
.++-.+.+-++ +.-.-++--|.+.+-++ ....+.+.+.-.++.+.+|+-.-|||+++-++.++....|-.+ ...
T Consensus 576 ~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~ 655 (1529)
T KOG0413|consen 576 DVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSS 655 (1529)
T ss_pred HHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhH
Confidence 33444455554 33344555666666554 2345667777778888999999999999999999999999876 356
Q ss_pred CchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 174 ~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
.|...|..+ ++|.+..|...|..++.....
T Consensus 656 ~wl~~li~~-~~d~es~v~e~a~~~i~k~l~ 685 (1529)
T KOG0413|consen 656 KWLHTLISM-LNDTESDVTEHARKLIMKVLT 685 (1529)
T ss_pred HHHHHHHHH-HhccHHHHHHHHHHHHHHHHh
Confidence 788888886 799999999999988877643
No 118
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.89 E-value=60 Score=40.31 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=105.0
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhH--HHHHHHHHHHHHhhcccchhHHHH
Q 004394 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQV--VANCLSALQEIWSLEASTSEEASR 215 (756)
Q Consensus 138 ~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~V--v~~Al~aL~eI~~~~~~~~~~~~~ 215 (756)
..++..+ |++|-+||+|=.-+-.+.+. ++|...+.....+|..+.. .++|+.+=+-|.+.=+... .|
T Consensus 8 ~~~~~T~-d~d~~~R~~AE~~L~q~~K~-------pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~---~~ 76 (1010)
T KOG1991|consen 8 QIFRATI-DSDAKERKAAEQQLNQLEKQ-------PGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHE---AP 76 (1010)
T ss_pred HHHHHhc-CCChHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccC---CC
Confidence 3344433 56699999888777766653 6777777776556777766 3455554455544211110 00
Q ss_pred HHHhhcc---HH-HHHHHHHHhccCChhHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcc
Q 004394 216 EREALIS---KP-VIYYLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (756)
Q Consensus 216 ~~~~ll~---~~-~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~-p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~ 290 (756)
.+..-++ |+ +-..++..+....+-..+.+-.++.... .+-++..-.+.+.+...|++.+.+.+|.+.-|+..+..
T Consensus 77 g~~~~I~e~dk~~irenIl~~iv~~p~~iRvql~~~l~~Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k 156 (1010)
T KOG1991|consen 77 GRPFGIPEEDKAVIRENILETIVQVPELIRVQLTACLNTIIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFK 156 (1010)
T ss_pred CCcCCCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 0001111 11 2234555555567777777777775443 33345667789999999999999999999988876642
Q ss_pred ccc--------hhH---HHHHHHHHHHHHHhhcC---CCcchHHHHHHHHHHHHhh
Q 004394 291 SMT--------DVH---QQVYERIKAPLLTLVSS---GSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 291 ~~~--------~~~---~~~l~rl~~~L~~LLss---~~~nirYvaL~~l~~L~~~ 332 (756)
... .+. +..+..+-+....|++. ...++.+..|+....+++.
T Consensus 157 ~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~ 212 (1010)
T KOG1991|consen 157 TYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYY 212 (1010)
T ss_pred HHhhccccccccHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 111 111 12222222333445653 2345677777766666654
No 119
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=89.42 E-value=0.56 Score=55.93 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
-..+.+.+.....+...+-++|++||+++.++.++.+.+.+..-- +....||..|+.|+.++-..+|+.+ .+.+
T Consensus 490 ~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~~~~~~R~~Ai~Alr~~~~~~~~~v-----~~~l 563 (618)
T PF01347_consen 490 YLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-EVPHFIRVAAIQALRRLAKHCPEKV-----REIL 563 (618)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--S-HHHHHHHHHTTTTGGGT-HHHH-----HHHH
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-ccchHHHHHHHHHHHHHhhcCcHHH-----HHHH
Confidence 445556655667788999999999999999998887665544422 4578999999999999977777665 4455
Q ss_pred HHhHhc-CCChhHHHHHHHHHHHH
Q 004394 180 KHLMLN-DPDPQVVANCLSALQEI 202 (756)
Q Consensus 180 ~~lLL~-D~d~~Vv~~Al~aL~eI 202 (756)
..++.+ ..++.|+.+|+.+|.+.
T Consensus 564 ~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 564 LPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHhcCCCCChhHHHHHHHHHHhc
Confidence 554322 46788999998888774
No 120
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.09 E-value=13 Score=41.03 Aligned_cols=140 Identities=19% Similarity=0.261 Sum_probs=93.8
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-h-----HHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCCCcchHHH--
Q 004394 378 LCEYAANVDIPIARESIRAVGKIALQQYDV-N-----AIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHDCI-- 448 (756)
Q Consensus 378 L~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-~-----~~vd~Ll~LL~~~~-~~v~~E~i~~i~~Il~~~p~~~~~~~-- 448 (756)
++.|+.+.|.++|..+.+-||.|+...|.+ . .....|+..++... .++...+...+..++|++|..+....
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~ 208 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKL 208 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhc
Confidence 345999999999999999999999998854 1 24567888777544 56778888889999999986554322
Q ss_pred ---HHHHHhhhccCCchhHHHHHHhHhccCCCCCCC-----hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCC
Q 004394 449 ---AVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (756)
Q Consensus 449 ---~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~-----~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p 517 (756)
..+.+++...-++...++.++.+++-+-..-.. ....+.....++...-..+++...+++..++....+
T Consensus 209 ~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 209 NGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred CCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 234455444446778888888888766432211 223344444455443226778888887777655443
No 121
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=88.79 E-value=49 Score=39.14 Aligned_cols=242 Identities=12% Similarity=0.060 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHhcC--CCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCC-hHHHH
Q 004394 42 DSKRELFKKVISYMTIG--IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDED-PMIRG 118 (756)
Q Consensus 42 ~~kk~~lkKlI~~~~lG--~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~N-p~iR~ 118 (756)
.+-++.++++....... .|....|..++.++..-+.+.=. - +.+.+ .. . +..|.
T Consensus 288 ~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~~~e~l~--~----------------l~~~~----~~-~~~~~r~ 344 (574)
T smart00638 288 VQIVEVLKHLVQDIASDVQEPAAAKFLRLVRLLRTLSEEQLE--Q----------------LWRQL----YE-KKKKARR 344 (574)
T ss_pred hhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCHHHHH--H----------------HHHHH----Hh-CCHHHHH
Confidence 44566666666543322 24555677777766544333111 1 11111 11 1 56777
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcC----CChhHHHH
Q 004394 119 LALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND----PDPQVVAN 194 (756)
Q Consensus 119 LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D----~d~~Vv~~ 194 (756)
+=+.+++..++++-+..+...|++ ..-++..+-.++..+....+ .|+ ++.++.+.++ +.+ +++.+..+
T Consensus 345 ~~~Dal~~~GT~~a~~~i~~~i~~--~~~~~~ea~~~~~~~~~~~~-~Pt----~~~l~~l~~l-~~~~~~~~~~~l~~s 416 (574)
T smart00638 345 IFLDAVAQAGTPPALKFIKQWIKN--KKITPLEAAQLLAVLPHTAR-YPT----EEILKALFEL-AESPEVQKQPYLRES 416 (574)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhh-cCC----HHHHHHHHHH-hcCccccccHHHHHH
Confidence 778888888888877776666665 22233444444444443332 233 3345666665 333 34555566
Q ss_pred HHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHH----HHHHHh
Q 004394 195 CLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMN----LLEDRL 270 (756)
Q Consensus 195 Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~----~l~~~L 270 (756)
|+.++..+... .|..-..+. .....++++ .+....
T Consensus 417 a~l~~~~lv~~-----------------------~c~~~~~~~------------------~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 417 ALLAYGSLVRR-----------------------YCVNTPSCP------------------DFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHHH-----------------------HhcCCCCCC------------------hhhHHHHHHHHHHHHHHHH
Confidence 66665554321 111000000 000111222 222222
Q ss_pred cccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhc---CCCcchHHHHHHHHHHHHhhCCcccccccceeeec
Q 004394 271 QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS---SGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQ 347 (756)
Q Consensus 271 ~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLs---s~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~ 347 (756)
+..+.-...-++|++.++.... ....|..++. ..++.+|..|+.++..++..+|..+...+-.+|-.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n 525 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN 525 (574)
T ss_pred hcCCchheeeHHHhhhccCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC
Confidence 2233334444555555544211 1112222332 12456788888888877777777666655445555
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 004394 348 YNEPSYVKKLKLEMLTAV 365 (756)
Q Consensus 348 ~~dp~~IK~~kLdIL~~L 365 (756)
.+++..||..+..+|...
T Consensus 526 ~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 526 RAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CCCChHHHHHHHHHHHhc
Confidence 667777888888777654
No 122
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=88.64 E-value=29 Score=38.93 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=91.8
Q ss_pred CCChhhHHHHHHHHHHccccCCh--------HHHHHHHHHHHHcCCCChHHHHHHHHH---HhcC--ChhhhHHHHHHHH
Q 004394 74 TSDIVLKKMCYLYVGNYAKVNPD--------LALLTINFLQRDCKDEDPMIRGLALRS---LCSL--RVANLVEYLVGPL 140 (756)
Q Consensus 74 s~d~~~KkL~YLyl~~~~~~~~e--------l~lL~iNtl~KDL~s~Np~iR~LALrt---Ls~I--~~~ei~e~l~~~v 140 (756)
+++-+++-.||=.+..+...... +-.+++=++.||.+ |...|--||+. +..+ +..++-..++..|
T Consensus 36 ~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~--~~~ER~QALkliR~~l~~~~~~~~~~~~vvral 113 (371)
T PF14664_consen 36 SDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNK--NDVEREQALKLIRAFLEIKKGPKEIPRGVVRAL 113 (371)
T ss_pred CCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCC--ChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 33477777777766655543222 23456677777765 56777777655 4555 5667788888899
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 141 ~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
..+..+++.-.|..|+..+..+.-.+|+.+...+-+..|.+.+ -|+...+..+.+.++..+..
T Consensus 114 vaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l-~d~~~~~~~~l~~~lL~lLd 176 (371)
T PF14664_consen 114 VAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRAL-IDGSFSISESLLDTLLYLLD 176 (371)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHH-HhccHhHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999886666677777764 56666666666666766654
No 123
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=88.43 E-value=11 Score=37.48 Aligned_cols=148 Identities=16% Similarity=0.104 Sum_probs=83.4
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCc-hhhHHHHHHHHHH
Q 004394 358 KLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKD-YVTAEALVLVKDL 436 (756)
Q Consensus 358 kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~-~v~~E~i~~i~~I 436 (756)
++.-+..=.++.|++.++++|.....+.+.+....+++.|-..|..-|+.....-.++..+..... .+...++..+..-
T Consensus 3 ~v~~~lnklt~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~~~~~~~a~l~~~l~~~~~~~f~~~ll~~~~~~ 82 (209)
T PF02854_consen 3 KVRGILNKLTPSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEPNFSPLYARLCAALNSRFPSEFRSLLLNRCQEE 82 (209)
T ss_dssp HHHHHHHHCSSTTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHCCHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCchHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Confidence 344444434599999999999988877789999999999999998877654444555555554444 4555555544444
Q ss_pred HhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccC-CCCCCC---hHHHHHHHhhhhcc--------CChHHHHHH
Q 004394 437 LRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY-SQDMQD---APYILESLTENWEE--------EPSAEVRLH 504 (756)
Q Consensus 437 l~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy-~~~i~~---~~~iL~~l~~~f~~--------e~~~~Vq~~ 504 (756)
++.... .. . ... ..-....-..+.+..+||- ...+-+ .-+++..++..... +. .+.=..
T Consensus 83 f~~~~~-~~-~---~~~---~~~~~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~~~~~~~~-ie~~~~ 153 (209)
T PF02854_consen 83 FEERYS-NE-E---LEE---NRQSSKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQPPPDEEN-IECLCT 153 (209)
T ss_dssp HHHHT--HH-H---HHH---HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCCHHTCHHH-HHHHHH
T ss_pred HHHhhh-hh-h---HHH---HHHHHHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhcccccccCCCcHhH-HHHHHH
Confidence 332110 00 0 000 0011122234567777773 333323 33445555555443 12 444455
Q ss_pred HHHHhhHhhh
Q 004394 505 LLTAVMKCFF 514 (756)
Q Consensus 505 lLtA~~Kl~~ 514 (756)
+|..+.+.+.
T Consensus 154 lL~~~G~~l~ 163 (209)
T PF02854_consen 154 LLKTCGKKLE 163 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 124
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=87.63 E-value=72 Score=38.39 Aligned_cols=144 Identities=24% Similarity=0.229 Sum_probs=87.0
Q ss_pred HHhcCC--Cccchhhhhhh-hc---cCCChhhHHHHHHH-HHHcccc-C--ChHHHHHHHHHHHHcCCCChHHHHHHHHH
Q 004394 54 YMTIGI--DVSAVFGEMVM-CS---ATSDIVLKKMCYLY-VGNYAKV-N--PDLALLTINFLQRDCKDEDPMIRGLALRS 123 (756)
Q Consensus 54 ~~~lG~--Dvs~lF~~Vi~-l~---~s~d~~~KkL~YLy-l~~~~~~-~--~el~lL~iNtl~KDL~s~Np~iR~LALrt 123 (756)
+|++|+ ..+.-|-++++ .+ .-+....+-+-+++ ...+++. + .|+.--..-.+.|-..+++--||=-.+.-
T Consensus 29 ~~em~t~~~F~eeflr~vn~il~vkKresi~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqi 108 (892)
T KOG2025|consen 29 VMEMLTAHEFSEEFLRVVNYILLVKKRESIPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQI 108 (892)
T ss_pred HHHhhhHhhhHHHHHHHHHHheeeccCCCcHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHH
Confidence 455554 34444666665 22 22334444444444 2223321 2 23222334556676777777676554444
Q ss_pred HhcC------ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHH
Q 004394 124 LCSL------RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (756)
Q Consensus 124 Ls~I------~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~ 197 (756)
+..+ ...++..-+...+..-+.|..|.||.-|+.|+-|+-....+ ++-.....+..++-+|+++.|..+|+.
T Consensus 109 la~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d--ee~~v~n~l~~liqnDpS~EVRRaaLs 186 (892)
T KOG2025|consen 109 LALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD--EECPVVNLLKDLIQNDPSDEVRRAALS 186 (892)
T ss_pred HHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--CcccHHHHHHHHHhcCCcHHHHHHHHH
Confidence 4443 33556677777777788999999999999999987642111 113456778888788999999999865
Q ss_pred HH
Q 004394 198 AL 199 (756)
Q Consensus 198 aL 199 (756)
-+
T Consensus 187 nI 188 (892)
T KOG2025|consen 187 NI 188 (892)
T ss_pred hh
Confidence 43
No 125
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.60 E-value=31 Score=44.54 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=94.4
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccc
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~-~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~ 340 (756)
++..+.--|++.+..+..+|++++..+...... +....-.-....|.+|. ..+.++|...++........+|..-..-
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~-D~~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFN-DISVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhc-cCChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 333444456778999999999998876532111 11000011223344444 5789999999999999998888653332
Q ss_pred ccee-eecCCCCHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhh-cC---------
Q 004394 341 YKHF-YCQYNEPSYVKKLKLEMLTAVANES----NTYEIVTELCEYAANVDIPIARESIRAVGKIALQ-QY--------- 405 (756)
Q Consensus 341 ~~~f-~c~~~dp~~IK~~kLdIL~~L~n~~----Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k-~~--------- 405 (756)
.... .|..+-|.-+|.++.-++....=.. .+..++....|-+++--..+|.+++..+..+-.+ |.
T Consensus 339 ~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~ 418 (1266)
T KOG1525|consen 339 TILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEI 418 (1266)
T ss_pred HHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 2111 2323333445555443333221111 1222555555666677788999999998887765 21
Q ss_pred --ChhHHHHHHHHHhhhcC
Q 004394 406 --DVNAIVDRLLQFLEMEK 422 (756)
Q Consensus 406 --~~~~~vd~Ll~LL~~~~ 422 (756)
...|+=+.++.++...+
T Consensus 419 t~~~swIp~kLL~~~y~~~ 437 (1266)
T KOG1525|consen 419 TPPFSWIPDKLLHLYYEND 437 (1266)
T ss_pred cccccccchhHHhhHhhcc
Confidence 24688889999887664
No 126
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=87.44 E-value=17 Score=36.01 Aligned_cols=139 Identities=18% Similarity=0.198 Sum_probs=76.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCC
Q 004394 362 LTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP 441 (756)
Q Consensus 362 L~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p 441 (756)
+-+| +++|+..++.+|.+...+ +++....+++.|-..+...|....+.-.++..+......+..+++..+..-+++.
T Consensus 8 lnkL-s~~n~~~~~~~l~~~~~~-~~~~~~~l~~~i~~~~~~~~~~~~~ya~L~~~l~~~~~~f~~~ll~~~~~~f~~~- 84 (200)
T smart00543 8 INKL-SPSNFESIIKELLKLNNS-DKNLRKYILELIFEKAVEEPNFIPAYARLCALLNAKNPDFGSLLLERLQEEFEKG- 84 (200)
T ss_pred HhhC-CHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344 478999999999977644 4678899999999988887765444455555555433334444444333333221
Q ss_pred CcchHHHHHHHHhhhccCCchhHHHHHHhHhccC-CCCCCC---hHHHHHHHhhhhccC------ChHHHHHHHHHHhhH
Q 004394 442 QWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY-SQDMQD---APYILESLTENWEEE------PSAEVRLHLLTAVMK 511 (756)
Q Consensus 442 ~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy-~~~i~~---~~~iL~~l~~~f~~e------~~~~Vq~~lLtA~~K 511 (756)
+.. ..-.........+..+||- ...+-. .-++++.+++..... ...++=+.+|..+.+
T Consensus 85 ---------~e~---~~~~~~~~~~~~i~fl~eL~~~~~i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~ 152 (200)
T smart00543 85 ---------LES---EEESDKQRRLGLVRFLGELYNFQVLTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGK 152 (200)
T ss_pred ---------HHH---HHHHhhhhHHhHHHHHHHHHHcccCcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhH
Confidence 000 0001122334556677773 333322 223444455444331 125556667777777
Q ss_pred hhhc
Q 004394 512 CFFK 515 (756)
Q Consensus 512 l~~~ 515 (756)
.+.+
T Consensus 153 ~l~~ 156 (200)
T smart00543 153 DLER 156 (200)
T ss_pred HHcC
Confidence 7663
No 127
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=87.43 E-value=51 Score=37.01 Aligned_cols=206 Identities=17% Similarity=0.168 Sum_probs=131.8
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCCc---ccccccceeeec----CCCCHHHHHHHHHHHHHhcCCC-CH----HHHHH
Q 004394 309 TLVSSGSPEQSYAVLSHLHILVMRAPF---IFASDYKHFYCQ----YNEPSYVKKLKLEMLTAVANES-NT----YEIVT 376 (756)
Q Consensus 309 ~LLss~~~nirYvaL~~l~~L~~~~p~---lf~~~~~~f~c~----~~dp~~IK~~kLdIL~~L~n~~-Nv----~~Iv~ 376 (756)
.+|++ +.++|=.++|.+..++..... +.+-|+..|.++ .+.-..=|..+|.++.++.+-. +. ..|+.
T Consensus 33 ~lL~~-~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 33 MLLSD-SKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HHCCC-cHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 35665 499999999999888765432 355577777543 3334567888999988877653 23 46788
Q ss_pred HHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-hH--HHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHH-----
Q 004394 377 ELCEYAANVDIPIARESIRAVGKIALQQYDV-NA--IVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCI----- 448 (756)
Q Consensus 377 EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-~~--~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~----- 448 (756)
-+..-+.+.|+.+++-++..++.++...|+. .+ -+.++++.+..+.-.+.+-++.++-.++ ..|+.|.+..
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL 190 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDL 190 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccH
Confidence 8888888889999999999999999998864 22 3567777665533234444455666666 3565544221
Q ss_pred H-HHHHhhhc---cC-Cch------hHHHHHHhHhccCCCCCC---ChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhh
Q 004394 449 A-VVGSISSQ---NV-QEP------KAKAALIWMLGEYSQDMQ---DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (756)
Q Consensus 449 ~-~l~~l~~~---~i-~~p------~ak~a~iWiLGEy~~~i~---~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~ 514 (756)
. ++.-+... .. ++. .++.+++-++--+...+- +.-.-++.+++.+.... +++|-.+|..+..+|-
T Consensus 191 ~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~dllr 269 (371)
T PF14664_consen 191 ESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFDLLR 269 (371)
T ss_pred HHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHHHHC
Confidence 1 11111110 01 111 234556666666655441 22256788888777766 8899999999999885
Q ss_pred cCC
Q 004394 515 KRP 517 (756)
Q Consensus 515 ~~p 517 (756)
-.+
T Consensus 270 ik~ 272 (371)
T PF14664_consen 270 IKP 272 (371)
T ss_pred CCC
Confidence 443
No 128
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=11 Score=41.56 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=72.4
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHH
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~ 216 (756)
+...+.++++-||..|+-.+..+.+-+|... .+.++...|...+-.|.+-.|...|+.+++.+.++++-.. .
T Consensus 129 ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~-----~ 203 (342)
T KOG2160|consen 129 LLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ-----D 203 (342)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH-----H
Confidence 3347889999999999999999999888643 3566778887776667777888999999998887664211 1
Q ss_pred HHhhccHHHHHHHHHHhcc--CChhHHHHHHHHHHhhCCC
Q 004394 217 REALISKPVIYYLLNRIKE--FSEWAQCLVLELVAKYVPL 254 (756)
Q Consensus 217 ~~~ll~~~~~~~Ll~~l~~--~~~W~Qi~IL~lL~~y~p~ 254 (756)
.+..++ -+.-|.+.+.. -+.=.|.+++-++..+...
T Consensus 204 ~fl~~~--G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 204 EFLKLN--GYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHHhcC--CHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 111122 12333444444 4566677777777666543
No 129
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=87.31 E-value=31 Score=39.21 Aligned_cols=174 Identities=15% Similarity=0.230 Sum_probs=107.2
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-----hHHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCC-Ccch
Q 004394 373 EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYP-QWSH 445 (756)
Q Consensus 373 ~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-----~~~vd~Ll~LL~~~~-~~v~~E~i~~i~~Il~~~p-~~~~ 445 (756)
..+..|++-+.+.|+.=|..+-.-+.++-.|+++. ..+.+.+.+++.... -+.+.|++..+..|+..+. .+.+
T Consensus 133 ~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~ 212 (409)
T PF01603_consen 133 KFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKE 212 (409)
T ss_dssp HHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcH
Confidence 34555666667777766666666667777777653 235567777777443 4678899999999998754 2222
Q ss_pred HHHHHHHHhhh--ccC-CchhHHHHHHhHhccCCCCCCC-hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh-hh
Q 004394 446 DCIAVVGSISS--QNV-QEPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ET 520 (756)
Q Consensus 446 ~~~~~l~~l~~--~~i-~~p~ak~a~iWiLGEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~-e~ 520 (756)
.-...+.+.+. ... .-+.--..+..++..|.+.-+. +..+++.+++.|...+ ..=+...|.-+..++-..|+ +.
T Consensus 213 eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~-s~Kev~FL~el~~il~~~~~~~f 291 (409)
T PF01603_consen 213 EHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTN-SQKEVLFLNELEEILEVLPPEEF 291 (409)
T ss_dssp HHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-chhHHHHHHHHHHHHHhcCHHHH
Confidence 22222333221 111 1122234566677777654433 7789999999999887 77788888888888877664 33
Q ss_pred HHHHH---HHHHhhhcCCChHHHhHHHHHH
Q 004394 521 QKVLG---AALAAGLADFHQDVHDRALFYH 547 (756)
Q Consensus 521 ~~~l~---~vL~~~~~d~d~dVrdRA~~Y~ 547 (756)
+.+.. +.+..|..+.+..|-+||..+|
T Consensus 292 ~~i~~~lf~~la~ci~S~h~qVAErAl~~w 321 (409)
T PF01603_consen 292 QKIMVPLFKRLAKCISSPHFQVAERALYFW 321 (409)
T ss_dssp HHHHHHHHHHHHHHHTSSSHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33333 4455677889999999999887
No 130
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=86.61 E-value=75 Score=37.48 Aligned_cols=121 Identities=24% Similarity=0.232 Sum_probs=75.8
Q ss_pred CChhhHHHHHHH-HHHc-cccCChHHHHHH---HHHHHHcCCCChHHHHHHHHHHhcC----Ch--hhhHHHHHHHHHhh
Q 004394 75 SDIVLKKMCYLY-VGNY-AKVNPDLALLTI---NFLQRDCKDEDPMIRGLALRSLCSL----RV--ANLVEYLVGPLGLG 143 (756)
Q Consensus 75 ~d~~~KkL~YLy-l~~~-~~~~~el~lL~i---Ntl~KDL~s~Np~iR~LALrtLs~I----~~--~ei~e~l~~~v~~~ 143 (756)
+.+..+-+-+|. ...| ...+||..-++- -.+.+-+.+++-.+|--.+.-++.+ +. ..+...+..-+.+-
T Consensus 61 ~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R 140 (885)
T COG5218 61 PSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSER 140 (885)
T ss_pred CCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 444444444443 2223 345666544544 4455666777777775555544443 32 45666666677777
Q ss_pred cCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHH
Q 004394 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (756)
Q Consensus 144 L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~ 197 (756)
+-|..+-||+-|+.|+.++-...-+ ++......|..++-+|+...|...|+.
T Consensus 141 ~~DRE~~VR~eAv~~L~~~Qe~~~n--een~~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 141 LFDREKAVRREAVKVLCYYQEMELN--EENRIVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHhccCC--hHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 7899999999999999887654222 113345567776677999999988754
No 131
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=85.14 E-value=47 Score=39.41 Aligned_cols=176 Identities=16% Similarity=0.137 Sum_probs=116.8
Q ss_pred HHcCCCChHHHHHHHHHHhcCCh----------hhhHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhh----hcCCccc
Q 004394 107 RDCKDEDPMIRGLALRSLCSLRV----------ANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYH----ISAPTCI 171 (756)
Q Consensus 107 KDL~s~Np~iR~LALrtLs~I~~----------~ei~e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~----~~p~~~~ 171 (756)
..++...|..|.++++..+.... .++.++....+..++ .+.+..++.+|++|+..+-+ ..-. ..
T Consensus 338 ~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~ 416 (678)
T KOG1293|consen 338 ASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LK 416 (678)
T ss_pred HHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-Cc
Confidence 45677889999999987765422 223444433333333 45677899999999866443 2223 33
Q ss_pred CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 172 ~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y 251 (756)
+.+..+.+..+ +.|++.+|...++.+++.+.-.-.. -+...+....+..+...+.++++=....-+++|+..
T Consensus 417 ~~dv~~plvql-l~dp~~~i~~~~lgai~NlVmefs~-------~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 417 RNDVAQPLVQL-LMDPEIMIMGITLGAICNLVMEFSN-------LKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred cchhHHHHHHH-hhCcchhHHHHHHHHHHHHHhhccc-------HHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 45667778787 6999999999999999988653221 111233344577888888899998999999999876
Q ss_pred CCC-ChhHHHHH-----HHHHHHHhcccchHHHHHHHHHHHhhccc
Q 004394 252 VPL-DSNEIFDI-----MNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (756)
Q Consensus 252 ~p~-d~~e~~~i-----l~~l~~~L~~~n~aVvleaik~ii~l~~~ 291 (756)
.-. +.++.+.. .+.+..+.+....+|.=+|..++-++...
T Consensus 489 ~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 489 MFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 433 33333333 24455566677788888888887777654
No 132
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.02 E-value=23 Score=43.15 Aligned_cols=71 Identities=13% Similarity=0.063 Sum_probs=51.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhh--hcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYH--ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~--~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
.........+.|+-+.+|--|+.-+.++++ .....+..++.+....+. +.|.|+-|-.||+..+.-++...
T Consensus 727 e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~-LkdedsyvyLnaI~gv~~Lcevy 799 (982)
T KOG4653|consen 727 EPLQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDT-LKDEDSYVYLNAIRGVVSLCEVY 799 (982)
T ss_pred HHHHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHH-hcccCceeeHHHHHHHHHHHHhc
Confidence 335556667788889999999999999998 333333345567777786 69999999999988665555433
No 133
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=67 Score=35.26 Aligned_cols=239 Identities=17% Similarity=0.213 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHhcCCCcc-chhhhhhhhccCCChhhHHHHHHHHHHccccCC-h---HHHHHHH-HHHH---Hc-CCCC
Q 004394 44 KRELFKKVISYMTIGIDVS-AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP-D---LALLTIN-FLQR---DC-KDED 113 (756)
Q Consensus 44 kk~~lkKlI~~~~lG~Dvs-~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~-e---l~lL~iN-tl~K---DL-~s~N 113 (756)
+..++.++.-.| -|..+. .+.++.-.-+-.+|-+.|-+..=-+..+.+... + -.++++| -+.| |+ ...|
T Consensus 63 cVscLERLfkak-egahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged 141 (524)
T KOG4413|consen 63 CVSCLERLFKAK-EGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED 141 (524)
T ss_pred HHHHHHHHHhhc-cchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc
Confidence 556676766555 344333 334443333444565666665554444443221 1 1345554 3444 43 4678
Q ss_pred hHHHHHHHHHHhcCC-hhhhHHHHHHH-------HHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHh
Q 004394 114 PMIRGLALRSLCSLR-VANLVEYLVGP-------LGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHL 182 (756)
Q Consensus 114 p~iR~LALrtLs~I~-~~ei~e~l~~~-------v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~l 182 (756)
..+--.|+.++.+|. .+.-.+.+++. ++++-.-.+..+|-...--+.++|..+|+.. ...++.+.|..-
T Consensus 142 deVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaE 221 (524)
T KOG4413|consen 142 DEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAE 221 (524)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHH
Confidence 888889999999884 34444444432 1122223466788888888899999998754 457778877766
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc--cCChhHHHHHHHHHHhhCCC----C-
Q 004394 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK--EFSEWAQCLVLELVAKYVPL----D- 255 (756)
Q Consensus 183 LL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~--~~~~W~Qi~IL~lL~~y~p~----d- 255 (756)
|-.-.|..|+++++-+..++...+.+ +.++-....+..+++.+. +.+||....-|-.+.++.-. +
T Consensus 222 lkGteDtLVianciElvteLaeteHg--------reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdv 293 (524)
T KOG4413|consen 222 LKGTEDTLVIANCIELVTELAETEHG--------REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDV 293 (524)
T ss_pred hcCCcceeehhhHHHHHHHHHHHhhh--------hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhc
Confidence 54458999999999999999865432 223333346677788765 46888887555555554321 1
Q ss_pred hhH--HHHHHHHH---HHHhcccchHHHHHHHHHHHhhccc
Q 004394 256 SNE--IFDIMNLL---EDRLQHANGAVVLSTIKVFLHLTLS 291 (756)
Q Consensus 256 ~~e--~~~il~~l---~~~L~~~n~aVvleaik~ii~l~~~ 291 (756)
.++ .+.++-.+ ...+....+...-.|+.++..++.+
T Consensus 294 seeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn 334 (524)
T KOG4413|consen 294 SEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN 334 (524)
T ss_pred CHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence 111 12222222 2334455566666677777666543
No 134
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=84.44 E-value=1.2e+02 Score=38.10 Aligned_cols=75 Identities=23% Similarity=0.239 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcC-CChhHHHHHHHHHHHHHhh
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D-~d~~Vv~~Al~aL~eI~~~ 205 (756)
+++++|.++..+...++|.+..||-.||=++.|+....|-... .+.+..+.++ .+- .++.+-..|+.+|.|++..
T Consensus 335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~La-d~vi~svid~-~~p~e~~~aWHgacLaLAELA~r 410 (1133)
T KOG1943|consen 335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELA-DQVIGSVIDL-FNPAEDDSAWHGACLALAELALR 410 (1133)
T ss_pred cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHH-HHHHHHHHHh-cCcCCchhHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999999999998884331 2334444443 332 2466777888899998763
No 135
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=84.30 E-value=33 Score=40.66 Aligned_cols=135 Identities=19% Similarity=0.106 Sum_probs=92.3
Q ss_pred CChHHHHHHHHHHhc-------CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHH
Q 004394 112 EDPMIRGLALRSLCS-------LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKH 181 (756)
Q Consensus 112 ~Np~iR~LALrtLs~-------I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~ 181 (756)
.+..+++.|+-++-+ +++.-=-..+..++.+++.|++..|.+++.-++..+.-.+.+ .+.+.++++.+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s 468 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES 468 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence 466777777655443 333311245667788888999999999999999888755433 3456788999999
Q ss_pred hHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHH-HHHHHHhccCChhHHHHHHHHHHhhCCC
Q 004394 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVI-YYLLNRIKEFSEWAQCLVLELVAKYVPL 254 (756)
Q Consensus 182 lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~-~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~ 254 (756)
+ +.+.|+.+..+++-+|..+.-..... +.....+.+. +.+..-.++.++-.|-..+++|+.+.-+
T Consensus 469 ~-~~~~~~n~r~~~~~~Lr~l~f~~de~-------~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 469 M-LTDPDFNSRANSLWVLRHLMFNCDEE-------EKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred H-hcCCCchHHHHHHHHHHHHHhcchHH-------HHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 7 79999999999999998886433210 1111112222 3344445666666799999999998755
No 136
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.13 E-value=1.1e+02 Score=37.07 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=80.3
Q ss_pred ChHHHHHHHHHHHHHHhc---CCC-ccchhhhhhhhccCCChhhHHHHHHHHHHccccC----ChHHHHHHHHHHHHcCC
Q 004394 40 IDDSKRELFKKVISYMTI---GID-VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN----PDLALLTINFLQRDCKD 111 (756)
Q Consensus 40 ~~~~kk~~lkKlI~~~~l---G~D-vs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~----~el~lL~iNtl~KDL~s 111 (756)
..++-.+.+.+.+..+-. |.| |..+|-++++-..+++-.++.=+...+-.+.+++ .++.=...-.+.+-+.|
T Consensus 58 i~dRIl~fla~fv~sl~q~d~e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 58 IPDRILSFLARFVESLPQLDKEEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD 137 (892)
T ss_pred cHHHHHHHHHHHHHhhhccCchhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc
Confidence 345556667777666542 334 3446888899889988888777777666665533 23333555567777889
Q ss_pred CChHHHHHHHHHHhcCChhh---hHHHHHHHHHhhc-CCCChHHHHHHHHHHH
Q 004394 112 EDPMIRGLALRSLCSLRVAN---LVEYLVGPLGLGL-KDNNSYVRTVAVIGVL 160 (756)
Q Consensus 112 ~Np~iR~LALrtLs~I~~~e---i~e~l~~~v~~~L-~d~~pyVRKkAalal~ 160 (756)
.-|.||--|+-+||.+...+ =++ +...++.++ +||++.||+.|..++.
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~dee~~-v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDEECP-VVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCCccc-HHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 99999999999999986321 111 111222222 7999999999998864
No 137
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=83.09 E-value=18 Score=37.97 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=81.0
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhcCCccc-----C------CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCI-----D------ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~~p~~~~-----~------~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
+|.|.+|-|-|.|+.|...+|+.-=+.+. + ..+.+.+..+ .++.+++|..+|+..+..+.-.......
T Consensus 1 Ll~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~-~~~~~~gvk~~~iKFle~vIl~qs~~~~ 79 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSL-WDSENPGVKLAAIKFLERVILVQSPGSS 79 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHG-GGSSSHHHHHHHHHHHHHHHHHTS---T
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHHHhcCCCCC
Confidence 57899999999999999999975222110 0 1123456665 5788999999999999877532111000
Q ss_pred HHHH--HHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccc--hHHHHHHHHHHHh
Q 004394 212 EASR--EREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHAN--GAVVLSTIKVFLH 287 (756)
Q Consensus 212 ~~~~--~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n--~aVvleaik~ii~ 287 (756)
..-+ ....-++ ++.+..-.|.....-| +.|+..+++.+...++... +.++..+++++..
T Consensus 80 ~~~~~~~~~~d~S-------L~~vp~~Hp~l~~~~L----------e~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~ 142 (239)
T PF11935_consen 80 DSPPRRGSPNDFS-------LSSVPPNHPLLNPQQL----------EAEANGLLDRLLDVLQSPHISSPLLTAIINSLSN 142 (239)
T ss_dssp TS---GGGTTS---------GGGS-TT-SSS-HHHH----------HHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHH
T ss_pred CCccccccccCCC-------HHHcCCCCCcCCHHHH----------HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 0000 0000000 0011111222222111 2577889999998887654 6777888887776
Q ss_pred hccccchhHHHHHHHHHHHHHHhhc
Q 004394 288 LTLSMTDVHQQVYERIKAPLLTLVS 312 (756)
Q Consensus 288 l~~~~~~~~~~~l~rl~~~L~~LLs 312 (756)
+....+. ...++.+.|.+|-.
T Consensus 143 Iak~RP~----~~~~Il~~ll~~~~ 163 (239)
T PF11935_consen 143 IAKQRPQ----FMSRILPALLSFNP 163 (239)
T ss_dssp HHHHSGG----GHHHHHHHHHHHHH
T ss_pred HHHHhhH----HHHHHHHHHHhcCc
Confidence 6544333 23556666666543
No 138
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=82.96 E-value=5.1 Score=36.05 Aligned_cols=69 Identities=20% Similarity=0.182 Sum_probs=54.4
Q ss_pred hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHh---hhcCCChHHHhHHHHHHHHhc
Q 004394 482 APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAA---GLADFHQDVHDRALFYHRLLQ 551 (756)
Q Consensus 482 ~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~---~~~d~d~dVrdRA~~Y~rLL~ 551 (756)
-++++..+++.|.+++ ..||.+...++..+.-...+++-.-+..++.. ...|.|+.||.=|...-|||+
T Consensus 25 l~~Il~pVL~~~~D~d-~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 25 LDEILPPVLKCFDDQD-SRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAELLDRLLK 96 (97)
T ss_pred HHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence 5677888899999999 99999999988888755555555555666653 346899999999999999875
No 139
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.79 E-value=2.1 Score=29.84 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=23.2
Q ss_pred hHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 176 PPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 176 i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
++.+.++ ++|+++.|..+|+.+|.+|.+
T Consensus 2 lp~l~~~-l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQL-LNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHH-HT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHHHHHHHHh
Confidence 5667787 699999999999999999865
No 140
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=82.35 E-value=83 Score=37.52 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHccccCChHHH-HHHHHHHHHcCCCChHHHHHHHHHHhcC---ChhhhHHHHHHHHHhhcCCCChHHHH
Q 004394 78 VLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRT 153 (756)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~el~l-L~iNtl~KDL~s~Np~iR~LALrtLs~I---~~~ei~e~l~~~v~~~L~d~~pyVRK 153 (756)
..|++.+=++.. ....-++ ++.+.+.+ ..-.+.....+|..+... -++++++.+..-++.--...++++|.
T Consensus 379 ~~r~~~lDal~~---aGT~~av~~i~~~I~~--~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ 453 (618)
T PF01347_consen 379 QARKIFLDALPQ---AGTNPAVKFIKDLIKS--KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRE 453 (618)
T ss_dssp HHHHHHHHHHHH---H-SHHHHHHHHHHHHT--T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHH
T ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHH
Confidence 344444444443 3344444 44444444 222233333444444333 34556666555555444456899999
Q ss_pred HHHHHHHHHhhhc-CC-----------cccCCCchHHHHHhH---hcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 004394 154 VAVIGVLKLYHIS-AP-----------TCIDADFPPTLKHLM---LNDPDPQVVANCLSALQEIWSLEASTSEEASRERE 218 (756)
Q Consensus 154 kAalal~kl~~~~-p~-----------~~~~~~~i~~L~~lL---L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~ 218 (756)
+|++++..+.+.. .. ....+.+++.+.+.+ ....|......++.+|..+...
T Consensus 454 ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------------- 520 (618)
T PF01347_consen 454 TALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------------- 520 (618)
T ss_dssp HHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------------
T ss_pred HHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------------
Confidence 9999998877532 11 111244555555543 2456667777788888776421
Q ss_pred hhccHHHHHHHHHHhcc---CChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccc--chHHHHHHHHHHHhhccc
Q 004394 219 ALISKPVIYYLLNRIKE---FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLS 291 (756)
Q Consensus 219 ~ll~~~~~~~Ll~~l~~---~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~--n~aVvleaik~ii~l~~~ 291 (756)
..+..|...+.. .+...++..+..|.++....++ .+.+.+.+++.+. .+-|..+|..+++...++
T Consensus 521 -----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~---~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~ 590 (618)
T PF01347_consen 521 -----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE---KVREILLPIFMNTTEDPEVRIAAYLILMRCNPS 590 (618)
T ss_dssp -----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH---HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---
T ss_pred -----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH---HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCC
Confidence 123334333322 3556666666666665444433 4556666666553 467999999888887654
No 141
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.88 E-value=20 Score=38.94 Aligned_cols=154 Identities=15% Similarity=0.149 Sum_probs=98.4
Q ss_pred HHHHHHHHHcccc-CChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Chhh---hHHHHHHHHHhhcCCCChHHHH
Q 004394 81 KMCYLYVGNYAKV-NPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVAN---LVEYLVGPLGLGLKDNNSYVRT 153 (756)
Q Consensus 81 kL~YLyl~~~~~~-~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~~e---i~e~l~~~v~~~L~d~~pyVRK 153 (756)
..-|+...+|-.- +|| .+.+...+-|.|.|=...+-+|..|.++ +.+. +...++-.|.+.+++.+.-|-|
T Consensus 71 ~~e~~~sk~l~~fd~p~---~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~Vsr 147 (334)
T KOG2933|consen 71 SVEYIVSKNLSPFDDPE---AALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSR 147 (334)
T ss_pred cHHHhhhcccCccCcHH---HHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5667777777543 344 4567778888888888888777666654 3333 3455666778888999999999
Q ss_pred HHHHHHHHHhhhcCCcccCCCchHHHHHhHh--cCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHH
Q 004394 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLML--NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN 231 (756)
Q Consensus 154 kAalal~kl~~~~p~~~~~~~~i~~L~~lLL--~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~ 231 (756)
+|++|+.-+|..+-+.+.+ ..-..+..|+. .+.+--|+-.|-.+|..+..+
T Consensus 148 aA~~t~~difs~ln~~i~~-~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~-------------------------- 200 (334)
T KOG2933|consen 148 AACMTLADIFSSLNNSIDQ-ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNH-------------------------- 200 (334)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhc--------------------------
Confidence 9999999999876665522 22222222211 133444555555555544321
Q ss_pred HhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 004394 232 RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 232 ~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
.....++..|.+.++|.|+-|...+..++.++.
T Consensus 201 -------------------------vtp~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 201 -------------------------VTPQKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred -------------------------cChHHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 011245667777888888888777777765543
No 142
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=81.41 E-value=1e+02 Score=34.99 Aligned_cols=219 Identities=16% Similarity=0.135 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhcCChh----hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChh
Q 004394 115 MIRGLALRSLCSLRVA----NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (756)
Q Consensus 115 ~iR~LALrtLs~I~~~----ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~ 190 (756)
....+--..+++++-. +..+.+-.-+.-+++..++++|..|+-++.-+..+.|+.-.-.++.+.+...+....++.
T Consensus 166 ~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~ 245 (415)
T PF12460_consen 166 RLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSE 245 (415)
T ss_pred cHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcc
Confidence 3445555677777543 333433333444456667999999999999999886653111223333333211233444
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCC-hhHHHHHHHHHHhhCCC-----C---hhH--H
Q 004394 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS-EWAQCLVLELVAKYVPL-----D---SNE--I 259 (756)
Q Consensus 191 Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~-~W~Qi~IL~lL~~y~p~-----d---~~e--~ 259 (756)
-...++.++.-|.+-= .-|.+-.....+.+|+..+.+.. -|.-.+-+++|..-.+. + -+- .
T Consensus 246 ~~~~~~~~~~Wi~KaL--------v~R~~~~~~~~~~~L~~lL~~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLyk 317 (415)
T PF12460_consen 246 LRPQALEILIWITKAL--------VMRGHPLATELLDKLLELLSSPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYK 317 (415)
T ss_pred hhHHHHHHHHHHHHHH--------HHcCCchHHHHHHHHHHHhCChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHh
Confidence 4555555554443200 00000011234556666665521 24444444444322100 0 000 1
Q ss_pred HHHH----HHHHHHhcccch---HHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 260 FDIM----NLLEDRLQHANG---AVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 260 ~~il----~~l~~~L~~~n~---aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
.++. ..+....+.++. ..-+.|...++.-.+ ..+...-+..+.+.|+.-|+..++++++.+|+.+..++..
T Consensus 318 QR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~ 395 (415)
T PF12460_consen 318 QRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEE 395 (415)
T ss_pred HHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 2233 333333344443 233444444444332 1232333466777777778888899999999999999999
Q ss_pred CCcccccccce
Q 004394 333 APFIFASDYKH 343 (756)
Q Consensus 333 ~p~lf~~~~~~ 343 (756)
.|.++..|+..
T Consensus 396 ~~~~i~~hl~s 406 (415)
T PF12460_consen 396 APELISEHLSS 406 (415)
T ss_pred CHHHHHHHHHH
Confidence 99999888753
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=81.07 E-value=46 Score=36.42 Aligned_cols=62 Identities=21% Similarity=0.185 Sum_probs=40.2
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcC--------ChhhhHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHh
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSL--------RVANLVEYLVGPLGLGLKDNNS--YVRTVAVIGVLKLY 163 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I--------~~~ei~e~l~~~v~~~L~d~~p--yVRKkAalal~kl~ 163 (756)
+..+.|-++......+.+|++.++-+ ...++.+.+.|.+++.+.|.+. -+|-.++.|+.-+.
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~ 159 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICT 159 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHH
Confidence 34555556555555666776665543 2467899999999999998764 45555554554443
No 144
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=1.6e+02 Score=36.83 Aligned_cols=128 Identities=22% Similarity=0.221 Sum_probs=83.0
Q ss_pred CChHHHHHHHHHHhcCCh--------hhhHH-HHHHHHHhhcCCCChHHHHHHHHHHHHHhhh---cCCcccCCCchHHH
Q 004394 112 EDPMIRGLALRSLCSLRV--------ANLVE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---SAPTCIDADFPPTL 179 (756)
Q Consensus 112 ~Np~iR~LALrtLs~I~~--------~ei~e-~l~~~v~~~L~d~~pyVRKkAalal~kl~~~---~p~~~~~~~~i~~L 179 (756)
.|+.-.--|||.+|+|.. .+..| .+.+.|...++++.-|.|-+|+-.+.++... +|... .+..+..
T Consensus 430 ~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l--~~ale~t 507 (1010)
T KOG1991|consen 430 KNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNL--SEALELT 507 (1010)
T ss_pred cChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHH--HHHHHHH
Confidence 345555679999998742 23343 3466677788999999999999999988843 23333 4455666
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHH
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~ 246 (756)
.++|++|++--|..-|.-||.-...+++..... ....-+++..+|+...+++..=.-..+|+
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~-----~~~hvp~~mq~lL~L~ne~End~Lt~vme 569 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEK-----VSAHVPPIMQELLKLSNEVENDDLTNVME 569 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhh-----HhhhhhHHHHHHHHHHHhcchhHHHHHHH
Confidence 677666988889888888888877665542111 11122456777777666654444444444
No 145
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=1.2e+02 Score=35.17 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=77.0
Q ss_pred HHHHHHHHH---cCCCChHHHHHHHHHHhcCCh------hhhHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCc
Q 004394 100 LTINFLQRD---CKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPT 169 (756)
Q Consensus 100 L~iNtl~KD---L~s~Np~iR~LALrtLs~I~~------~ei~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~ 169 (756)
+..|.++-+ ..|||..+|++|+|.+++... ......+...|.++|-|. +..|-=.|..|+.++..+-...
T Consensus 255 lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 255 LLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred cHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Confidence 444555544 578999999999999999743 235556666667766554 6788889999998887653322
Q ss_pred ccCCCc---hHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 170 CIDADF---PPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 170 ~~~~~~---i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
-....+ ..+++.+ ..|.++.+..+|+.++..+.+..++
T Consensus 335 ~l~~~~l~ialrlR~l-~~se~~~~R~aa~~Lfg~L~~l~g~ 375 (533)
T KOG2032|consen 335 DLESYLLNIALRLRTL-FDSEDDKMRAAAFVLFGALAKLAGG 375 (533)
T ss_pred chhhhchhHHHHHHHH-HHhcChhhhhhHHHHHHHHHHHcCC
Confidence 112333 3467776 6899999999999999998875554
No 146
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.53 E-value=36 Score=41.58 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=104.4
Q ss_pred HHHHHHHhccC-ChhHHHHHHHHHHhhCC-CChhH-----HHHHHHHHHHHhccc-chHHHHHHHHHHHhhccccchhHH
Q 004394 226 IYYLLNRIKEF-SEWAQCLVLELVAKYVP-LDSNE-----IFDIMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQ 297 (756)
Q Consensus 226 ~~~Ll~~l~~~-~~W~Qi~IL~lL~~y~p-~d~~e-----~~~il~~l~~~L~~~-n~aVvleaik~ii~l~~~~~~~~~ 297 (756)
+.+||..+..- +|..|+.-|.=|....- .+++. +..++..|..+|+|. |.-+.+-|+|++.++..--|.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 56788777654 89999887776654432 23222 356778888999985 678999999999887532111000
Q ss_pred HHHH-HHHHHHH-HhhcCCCcchHHHHHHHHHHHHhhCCcc-ccc-c------cceeeecCCCCHHHHHHHHHHHHHhcC
Q 004394 298 QVYE-RIKAPLL-TLVSSGSPEQSYAVLSHLHILVMRAPFI-FAS-D------YKHFYCQYNEPSYVKKLKLEMLTAVAN 367 (756)
Q Consensus 298 ~~l~-rl~~~L~-~LLss~~~nirYvaL~~l~~L~~~~p~l-f~~-~------~~~f~c~~~dp~~IK~~kLdIL~~L~n 367 (756)
.+++ .+++.|+ +|+.-.--.+.-=+|+++.+|.+++|.. ++. . +-.|| .+.++|.+|.|-..+|.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFF-----Si~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFF-----SIHAQRVALAIAANCCK 323 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 1111 1233332 3333222334444788999999999963 222 1 11233 36789999999998884
Q ss_pred C------CCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhc
Q 004394 368 E------SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ 404 (756)
Q Consensus 368 ~------~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~ 404 (756)
. .-+.+.|.=|..-+...|.....-+.....++++.|
T Consensus 324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f 366 (1051)
T KOG0168|consen 324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGF 366 (1051)
T ss_pred cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence 3 234455555555555556555566666666777665
No 147
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=80.45 E-value=31 Score=34.75 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh---hcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH---ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 131 ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~---~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
.+++...+.|.++..++++.||..|+-.+.-+.+ .+|..+ ++.|..| ..|+|+.+..-|...+.++.++.+
T Consensus 4 ~l~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~c-----vp~lIAL-~ts~~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 4 ALVQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQC-----VPTLIAL-ETSPNPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHH-----HhHhhhh-hCCCChHHHHHHHHHHHHHHHHhH
Confidence 4667778888999999999999999988877776 467655 7788886 799999999999999999987665
Q ss_pred c
Q 004394 208 S 208 (756)
Q Consensus 208 ~ 208 (756)
+
T Consensus 78 s 78 (187)
T PF12830_consen 78 S 78 (187)
T ss_pred H
Confidence 4
No 148
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=80.23 E-value=5.9 Score=47.22 Aligned_cols=82 Identities=22% Similarity=0.091 Sum_probs=35.9
Q ss_pred cCCCChHHHHHHHHHHhcC--ChhhhHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhc
Q 004394 109 CKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN 185 (756)
Q Consensus 109 L~s~Np~iR~LALrtLs~I--~~~ei~e~l~~~v~~~L~-d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~ 185 (756)
.+|.|.-||-.|..++|=+ ++|+.+.. +..+|+ +-||+||--||+|+.=.+.-... ...++.|..| .+
T Consensus 564 VsD~nDDVrRaAVialGFVl~~dp~~~~s----~V~lLses~N~HVRyGaA~ALGIaCAGtG~----~eAi~lLepl-~~ 634 (929)
T KOG2062|consen 564 VSDVNDDVRRAAVIALGFVLFRDPEQLPS----TVSLLSESYNPHVRYGAAMALGIACAGTGL----KEAINLLEPL-TS 634 (929)
T ss_pred ccccchHHHHHHHHHheeeEecChhhchH----HHHHHhhhcChhhhhhHHHHHhhhhcCCCc----HHHHHHHhhh-hc
Confidence 3455555555555555543 33333322 222222 23555555555555443332211 2234445444 35
Q ss_pred CCChhHHHHHHHHH
Q 004394 186 DPDPQVVANCLSAL 199 (756)
Q Consensus 186 D~d~~Vv~~Al~aL 199 (756)
|+..-|...|+.++
T Consensus 635 D~~~fVRQgAlIa~ 648 (929)
T KOG2062|consen 635 DPVDFVRQGALIAL 648 (929)
T ss_pred ChHHHHHHHHHHHH
Confidence 55555554444443
No 149
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=79.62 E-value=6.2 Score=48.21 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=88.5
Q ss_pred HHHHHHHHccccCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhcCChhh--hHHHHHHHHHhhcCCCChHHHHHHHHH
Q 004394 82 MCYLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSLRVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIG 158 (756)
Q Consensus 82 L~YLyl~~~~~~~~el~lL~iNtl~KDL~-s~Np~iR~LALrtLs~I~~~e--i~e~l~~~v~~~L~d~~pyVRKkAala 158 (756)
.+.+.+...-=.+.+++--.+..|.|.|. +....+|..-+-+||.|++.= |++-.+|-|..+|.|+++.|||-+++-
T Consensus 950 ~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~Dp~~iVRrqt~il 1029 (1529)
T KOG0413|consen 950 VGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLCDPSVIVRRQTIIL 1029 (1529)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhcCchHHHHHHHHHH
Confidence 34444433333456777777888888886 455677777777888887755 889999999999999999999999999
Q ss_pred HHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 159 VLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 159 l~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
+.++.+..=-.....=|+..+..+ -|.++-+..-|=..+.++.+.+
T Consensus 1030 L~rLLq~~~vKw~G~Lf~Rf~l~l--~D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1030 LARLLQFGIVKWNGELFIRFMLAL--LDANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred HHHHHhhhhhhcchhhHHHHHHHH--cccCHHHHHHHHHHHHHHHhhc
Confidence 999987421111111234555553 4999999998888888887644
No 150
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=79.60 E-value=1.1e+02 Score=34.34 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=66.6
Q ss_pred hhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcC
Q 004394 67 EMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLK 145 (756)
Q Consensus 67 ~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~ 145 (756)
.|++.+.. ....|||+--++-+|++.-|+++--++|.-..=|.|.+--||--|+|-|...+..+....+.+.+.++|+
T Consensus 29 ~il~~~k~-~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 29 GILKAVKG-TSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred HHHHHhhc-chHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 34444333 5679999999999999999999999999977777888999999999999999888888888888888887
No 151
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=79.08 E-value=9.8 Score=45.22 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHhcCCCccc--------------------hhhhhhhhccCCChhhHHHHHHHHHHccccCChHHH--H
Q 004394 43 SKRELFKKVISYMTIGIDVSA--------------------VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--L 100 (756)
Q Consensus 43 ~kk~~lkKlI~~~~lG~Dvs~--------------------lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l--L 100 (756)
.++..+..++..+-.|.-.+. +-+.+++++.++|-.+|-+..-|+..|.+.=++-.+ -
T Consensus 290 ~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~ 369 (690)
T KOG1243|consen 290 IASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQ 369 (690)
T ss_pred HHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcch
Confidence 456666777777666651111 234445788888888877777777777665443322 4
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCCh----hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc-CCcccCCCc
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRV----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCIDADF 175 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~----~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~-p~~~~~~~~ 175 (756)
+...+..-+.|.|+.+|..+|++|..|.. ..+-..+...+.++-.|.++-+|-+..+|+.|+-... |.. ...-.
T Consensus 370 I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~-R~~vL 448 (690)
T KOG1243|consen 370 IFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV-RKRVL 448 (690)
T ss_pred hHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhh-hcccc
Confidence 56788889999999999999999988632 2345556666677777889999999999999987653 332 22223
Q ss_pred hHHHHHhHhcCCChhHHHHHHHHHHH
Q 004394 176 PPTLKHLMLNDPDPQVVANCLSALQE 201 (756)
Q Consensus 176 i~~L~~lLL~D~d~~Vv~~Al~aL~e 201 (756)
.-...+. +.|+=+--..+++-++..
T Consensus 449 ~~aftra-lkdpf~paR~a~v~~l~a 473 (690)
T KOG1243|consen 449 ASAFTRA-LKDPFVPARKAGVLALAA 473 (690)
T ss_pred chhhhhh-hcCCCCCchhhhhHHHhh
Confidence 3333343 345444345555555543
No 152
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=78.43 E-value=7.1 Score=36.56 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcccc-hHHHHHHHHHHHhhccccchhHHHHHHH--HHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 260 FDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 260 ~~il~~l~~~L~~~n-~aVvleaik~ii~l~~~~~~~~~~~l~r--l~~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
++++..|..+|..++ +.++-=|+.=+.++....+.. ..++++ ++..+..|+++.++++||-||.++.+++..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 456777777775443 322222333233222222222 233333 344577899999999999999999998764
No 153
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.35 E-value=48 Score=37.97 Aligned_cols=156 Identities=12% Similarity=0.096 Sum_probs=94.9
Q ss_pred HHH-HHHHhcCChhhhHH----HHHHHHHhhcCC-CChHHHHHHHHHHHHHhhhcCCcccCCC--chHHHHHhHhcCCCh
Q 004394 118 GLA-LRSLCSLRVANLVE----YLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCIDAD--FPPTLKHLMLNDPDP 189 (756)
Q Consensus 118 ~LA-LrtLs~I~~~ei~e----~l~~~v~~~L~d-~~pyVRKkAalal~kl~~~~p~~~~~~~--~i~~L~~lLL~D~d~ 189 (756)
|++ |-.|.+-+.-.+++ .+...+...|.| .++..||-|.--+-++.+-.|..+.+.. .+.++.+. -.|.+.
T Consensus 307 alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea-a~ds~~ 385 (516)
T KOG2956|consen 307 ALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA-AKDSQD 385 (516)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH-HhCCch
Confidence 444 44555555433443 445567777888 6777777788888889998888773311 12334444 468999
Q ss_pred hHHHHHHHHHHHH-HhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC-CCChhHHHHHHHHHH
Q 004394 190 QVVANCLSALQEI-WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-PLDSNEIFDIMNLLE 267 (756)
Q Consensus 190 ~Vv~~Al~aL~eI-~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~-p~d~~e~~~il~~l~ 267 (756)
.|+..|.-....+ ..+.|. .| +..++..+...++---+.+|+.+++.+ .-+.++...+++-+.
T Consensus 386 ~v~~~Aeed~~~~las~~P~----~~-----------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 386 EVMRVAEEDCLTTLASHLPL----QC-----------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred hHHHHHHHHHHHHHHhhCch----hH-----------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 8888776554433 333331 22 222333333366667778888888765 335556655555555
Q ss_pred HH----hcccchHHHHHHHHHHHhhc
Q 004394 268 DR----LQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 268 ~~----L~~~n~aVvleaik~ii~l~ 289 (756)
|. -.+.+++|.-+||-|++.+-
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 54 35778889888888877653
No 154
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=77.88 E-value=5 Score=37.57 Aligned_cols=52 Identities=23% Similarity=0.251 Sum_probs=33.5
Q ss_pred ChHHHHHHHHHHhcC-----ChhhhHHHH--HHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 004394 113 DPMIRGLALRSLCSL-----RVANLVEYL--VGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (756)
Q Consensus 113 Np~iR~LALrtLs~I-----~~~ei~e~l--~~~v~~~L~d~~pyVRKkAalal~kl~~ 164 (756)
||.+.+.|..-+|.+ ....+++.+ -..|++++.|+++-||+-|..|+.|+..
T Consensus 57 d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 57 DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 455555555555543 122233222 3468899999999999999999999864
No 155
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.86 E-value=1.8e+02 Score=35.75 Aligned_cols=164 Identities=20% Similarity=0.180 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCC-ChhHHHHHHHHHHHHHhhcccchh-
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEASTSE- 211 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~-d~~Vv~~Al~aL~eI~~~~~~~~~- 211 (756)
+.+...+.+.+ +++|-|||.|=-++-..-. .+++.-.+..++-++. |+....+|...+-.-.+++=....
T Consensus 5 e~l~~~l~qTl-~pdps~rk~aEr~L~~~e~-------q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~ 76 (960)
T KOG1992|consen 5 ETLANYLLQTL-SPDPSVRKPAERALRSLEG-------QQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAED 76 (960)
T ss_pred HHHHHHHHhcC-CCCCccCchHHHHHHHhcc-------CCCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCC
Confidence 45555666655 3678899998777643322 2556666667654444 677766665555444432211000
Q ss_pred ---HHHHHHHhhccHHHHHHHHHH-hccCChhHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhccc----chHHHHHHH
Q 004394 212 ---EASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDS-NEIFDIMNLLEDRLQHA----NGAVVLSTI 282 (756)
Q Consensus 212 ---~~~~~~~~ll~~~~~~~Ll~~-l~~~~~W~Qi~IL~lL~~y~p~d~-~e~~~il~~l~~~L~~~----n~aVvleai 282 (756)
+.+.+ ++..+.+++-. .-...+=.|+.+=+.+...+..|- +..-+++.-+..++++. +.+|+-.|=
T Consensus 77 ~~~~i~~~-----~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWptLl~dL~~~ls~~D~~~~~gVL~tah 151 (960)
T KOG1992|consen 77 SPIKIIEE-----DREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWPTLLPDLVARLSSGDFNVINGVLVTAH 151 (960)
T ss_pred Cccccchh-----HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 01100 01223333322 223345679999999988876664 34456777777888743 456655555
Q ss_pred HHHHhhcccc--chhH---HHHHHHHHHHHHHh
Q 004394 283 KVFLHLTLSM--TDVH---QQVYERIKAPLLTL 310 (756)
Q Consensus 283 k~ii~l~~~~--~~~~---~~~l~rl~~~L~~L 310 (756)
..|=.+.... .++- ..++.+...|+.-+
T Consensus 152 siFkr~R~efrSdaL~~EIK~vLd~f~~Plt~L 184 (960)
T KOG1992|consen 152 SIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDL 184 (960)
T ss_pred HHHHhcCcccccHHHHHHHHHHHHhhHhHHHHH
Confidence 4555554311 1121 23556666665443
No 156
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=77.48 E-value=4.9 Score=45.02 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcC---CCChHHHHHHHHHHhcCC---hhhhHHHHHHHHHhhcCCCChHHHHHHHHHH
Q 004394 98 ALLTINFLQRDCK---DEDPMIRGLALRSLCSLR---VANLVEYLVGPLGLGLKDNNSYVRTVAVIGV 159 (756)
Q Consensus 98 ~lL~iNtl~KDL~---s~Np~iR~LALrtLs~I~---~~ei~e~l~~~v~~~L~d~~pyVRKkAalal 159 (756)
.-...+.+.-||+ +..|.+|+-|++++...| .++....+++.+.++|.+++.-|+--||.|+
T Consensus 303 ~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 303 VDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3344666667777 678999999999998765 4778888999999999999999999999986
No 157
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=77.28 E-value=1.2e+02 Score=33.38 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC-c------ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHH
Q 004394 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-T------CIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 130 ~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~-~------~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
..+++.+.+.++++|.+++..|+--|+-.+.++..-+-. . +.+.++.+.+.+. ....|-.|.-+|+..+..|
T Consensus 77 ahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildc-IggeddeVAkAAiesikri 155 (524)
T KOG4413|consen 77 AHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDC-IGGEDDEVAKAAIESIKRI 155 (524)
T ss_pred hhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHH-HcCCcHHHHHHHHHHHHHH
Confidence 345666777777777777777777777666666654321 1 1234556666666 3567788888888877777
Q ss_pred HhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH-----HHHHHHHHHHhcc-cchH
Q 004394 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI-----FDIMNLLEDRLQH-ANGA 276 (756)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~-----~~il~~l~~~L~~-~n~a 276 (756)
........ ...+. .+++.- ++.+.--.|+....+.++.++-....-.++.+ ..+++.+..-++- ...-
T Consensus 156 alfpaale-aiFeS--ellDdl---hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtL 229 (524)
T KOG4413|consen 156 ALFPAALE-AIFES--ELLDDL---HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTL 229 (524)
T ss_pred HhcHHHHH-Hhccc--ccCChH---HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCccee
Confidence 54221100 00000 012211 23333346788889999998877654444332 2255555555544 3445
Q ss_pred HHHHHHHHHHhhc
Q 004394 277 VVLSTIKVFLHLT 289 (756)
Q Consensus 277 Vvleaik~ii~l~ 289 (756)
|...|+..+..+.
T Consensus 230 VianciElvteLa 242 (524)
T KOG4413|consen 230 VIANCIELVTELA 242 (524)
T ss_pred ehhhHHHHHHHHH
Confidence 6666666665543
No 158
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=76.64 E-value=20 Score=34.60 Aligned_cols=80 Identities=14% Similarity=0.058 Sum_probs=52.3
Q ss_pred HHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC----Ch---hhh-HHHHHHHHHhhcC-CCChHHHHHHHH
Q 004394 87 VGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANL-VEYLVGPLGLGLK-DNNSYVRTVAVI 157 (756)
Q Consensus 87 l~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I----~~---~ei-~e~l~~~v~~~L~-d~~pyVRKkAal 157 (756)
++-..+.+++..--++..++|-++++||.+.-+||.-+-.+ +. .++ ...+...+.+++. ..++-||++++.
T Consensus 28 icD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~ 107 (142)
T cd03569 28 ICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILE 107 (142)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHH
Confidence 34344444555678899999999999999999998766543 11 111 1333444555554 567899999888
Q ss_pred HHHHHhhhc
Q 004394 158 GVLKLYHIS 166 (756)
Q Consensus 158 al~kl~~~~ 166 (756)
.+..-....
T Consensus 108 li~~W~~~f 116 (142)
T cd03569 108 LIQAWALAF 116 (142)
T ss_pred HHHHHHHHh
Confidence 776655443
No 159
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=75.63 E-value=76 Score=39.30 Aligned_cols=164 Identities=13% Similarity=0.151 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHhcCC-Cccchhhhh----hhh-ccCCChhhHHHHHHHHHHccccCC----hHHHHHHHHHHHHcC
Q 004394 41 DDSKRELFKKVISYMTIGI-DVSAVFGEM----VMC-SATSDIVLKKMCYLYVGNYAKVNP----DLALLTINFLQRDCK 110 (756)
Q Consensus 41 ~~~kk~~lkKlI~~~~lG~-Dvs~lF~~V----i~l-~~s~d~~~KkL~YLyl~~~~~~~~----el~lL~iNtl~KDL~ 110 (756)
-..|++++..++..+..-. +.+.-+... ++. ....|+..-.+.-.++..++.... ..+..+.|.|..-+.
T Consensus 267 WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lk 346 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLK 346 (815)
T ss_pred hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhh
Confidence 3678999999998887543 333222222 222 223344444444444444444333 456788899999999
Q ss_pred CCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcC-CcccC---CCchHHHHHhHhcC
Q 004394 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISA-PTCID---ADFPPTLKHLMLND 186 (756)
Q Consensus 111 s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p-~~~~~---~~~i~~L~~lLL~D 186 (756)
+..+.+|--++.++=.+...--...+.+.|...+.+.+|-+|--...-+-+.++... ..+.. .+..+.+... .+|
T Consensus 347 ekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~-~~D 425 (815)
T KOG1820|consen 347 EKKSELRDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKH-IND 425 (815)
T ss_pred hccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhh-ccC
Confidence 999999987777766665555567778889999999999999998888888888766 33321 2345566665 689
Q ss_pred CChhHHHHHHHHHHHHHhh
Q 004394 187 PDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 187 ~d~~Vv~~Al~aL~eI~~~ 205 (756)
.|.-|.-+|..++..+.+.
T Consensus 426 ~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 426 TDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 9999999999999888653
No 160
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=75.62 E-value=35 Score=38.70 Aligned_cols=234 Identities=14% Similarity=0.101 Sum_probs=141.9
Q ss_pred HHHHHHHHHH--HcCCC----ChHHHHHHHHHHhcCChhhhH-----HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc
Q 004394 98 ALLTINFLQR--DCKDE----DPMIRGLALRSLCSLRVANLV-----EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (756)
Q Consensus 98 ~lL~iNtl~K--DL~s~----Np~iR~LALrtLs~I~~~ei~-----e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~ 166 (756)
..-.+|-+++ |+.+. |.+-|+.-+-.+-..+.+.|- +.+...+...+.+.+...--.+++++..+-|.+
T Consensus 267 ~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D 346 (604)
T KOG4500|consen 267 LEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRD 346 (604)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccc
Confidence 3344565554 55554 344455555555555665532 235666777788888888999999999998876
Q ss_pred CCcc--cCCCchHHHHHhHhc----CCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhH
Q 004394 167 APTC--IDADFPPTLKHLMLN----DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWA 240 (756)
Q Consensus 167 p~~~--~~~~~i~~L~~lLL~----D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~ 240 (756)
...+ .+.++.++|.++|-+ |.|..++.+++++|..+.-.-+. +...+.......++..++...|-.
T Consensus 347 ~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n--------ka~~~~aGvteaIL~~lk~~~ppv 418 (604)
T KOG4500|consen 347 DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN--------KAHFAPAGVTEAILLQLKLASPPV 418 (604)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc--------hhhccccchHHHHHHHHHhcCCcc
Confidence 5432 256788888887533 57788899999999887542221 112233334566777778788888
Q ss_pred HHHHHHHHHhhCCCChhHHH------HHHHHHHHHhcccchH-HHHHHHHHHHhhccc--cchhHHHHH-HHHHHHHHHh
Q 004394 241 QCLVLELVAKYVPLDSNEIF------DIMNLLEDRLQHANGA-VVLSTIKVFLHLTLS--MTDVHQQVY-ERIKAPLLTL 310 (756)
Q Consensus 241 Qi~IL~lL~~y~p~d~~e~~------~il~~l~~~L~~~n~a-Vvleaik~ii~l~~~--~~~~~~~~l-~rl~~~L~~L 310 (756)
+-+++-.++...-.-+.-+. ++++.+...=++...| |.-|.-|++..+... ..++...+. ...+.-++++
T Consensus 419 ~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm 498 (604)
T KOG4500|consen 419 TFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSM 498 (604)
T ss_pred hHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHH
Confidence 88888888876543332222 3445555555566654 888988887655321 111111111 1112235556
Q ss_pred hcCCCcchHHHHHHHHHHHHhhCCccccc
Q 004394 311 VSSGSPEQSYAVLSHLHILVMRAPFIFAS 339 (756)
Q Consensus 311 Lss~~~nirYvaL~~l~~L~~~~p~lf~~ 339 (756)
+.+..-+++--+|-++..+...++....+
T Consensus 499 ~t~~hi~mqnEalVal~~~~~~yl~~~~k 527 (604)
T KOG4500|consen 499 FTKNHINMQNEALVALLSTESKYLIVIGK 527 (604)
T ss_pred HHHhhHHHhHHHHHHHHHHHHHhccccch
Confidence 65566677777777777777776654443
No 161
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=74.68 E-value=35 Score=34.00 Aligned_cols=66 Identities=23% Similarity=0.194 Sum_probs=51.5
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 138 ~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
+.+.+-..++++++|+.|..+..+.+....+ . ..+.+.+..+ +.|++..|.-+.--+|.++...+|
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~-~--~~~l~~~~~~-~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETD-F--DLLLEIIERL-LHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhccc-H--HHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHhhCH
Confidence 4577778899999999999999998876111 1 3456677775 688999998888889999987654
No 162
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=74.55 E-value=60 Score=35.32 Aligned_cols=142 Identities=14% Similarity=0.164 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH----HH
Q 004394 186 DPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI----FD 261 (756)
Q Consensus 186 D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~----~~ 261 (756)
..+..++...+.++.++...+|....-.. .....-....+..+++.+...+.+.+.....+|+.+....+... .+
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~~~~~~-~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~ 146 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSRVELFL-ELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKE 146 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSSHHHHH-HHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHHHHHHH-HhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHH
Confidence 46888999999999999987775321100 00000001135667776777899999999998887754332211 23
Q ss_pred HHHHHHHHh----cccchHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHhh-------cCCCcchHHHHHHHHHHH
Q 004394 262 IMNLLEDRL----QHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLV-------SSGSPEQSYAVLSHLHIL 329 (756)
Q Consensus 262 il~~l~~~L----~~~n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~LL-------ss~~~nirYvaL~~l~~L 329 (756)
+++.+...+ ++.++.+..-|++++..+-.. +..+..+. .+..+.|..++ +.....++|-++-.+-.+
T Consensus 147 ~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL 225 (312)
T PF03224_consen 147 ALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL 225 (312)
T ss_dssp HHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH
Confidence 444444444 344555667777777666432 22222222 23345566666 223455667776666544
No 163
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=74.21 E-value=2.5 Score=42.94 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=57.2
Q ss_pred HHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 103 Ntl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
..+.+=+.|+|+.+|-.|+.++......+-.+.+...+...+.|++.||||...-++..++..+|+.+
T Consensus 123 ~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v 190 (213)
T PF08713_consen 123 ELLEKWAKSDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEV 190 (213)
T ss_dssp HHHHHHHHCSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHH
Confidence 34455567999999999998888877777788899999999999999999999999999999998876
No 164
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=73.43 E-value=23 Score=33.54 Aligned_cols=86 Identities=17% Similarity=0.086 Sum_probs=55.7
Q ss_pred HHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Ch----hhhHH-HHHHHHHhhcCC---CChHH
Q 004394 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANLVE-YLVGPLGLGLKD---NNSYV 151 (756)
Q Consensus 83 ~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~----~ei~e-~l~~~v~~~L~d---~~pyV 151 (756)
+-+.++-..+.+++.+--++..|+|-++++||.++-+||..+-.+ +. .+++. .....+.+.+.. .++-|
T Consensus 20 ~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~V 99 (133)
T cd03561 20 LNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKV 99 (133)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHH
Confidence 334455555556777788899999999999999999998877554 11 12221 233345555543 46788
Q ss_pred HHHHHHHHHHHhhhcCC
Q 004394 152 RTVAVIGVLKLYHISAP 168 (756)
Q Consensus 152 RKkAalal~kl~~~~p~ 168 (756)
|+++...+.......+.
T Consensus 100 k~kil~ll~~W~~~f~~ 116 (133)
T cd03561 100 REKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 88887777666654443
No 165
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=73.28 E-value=25 Score=34.71 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=56.4
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc-CCccc--CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~-p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
.......+..-+.++|++++++-|-+++.-+......+ ++.+. -..|...+...|-+...+.+...|+.++..|..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD 97 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 45566778888999999999999987777777777776 55542 245888888875445566778888888888865
No 166
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=72.53 E-value=3.3 Score=31.31 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=17.1
Q ss_pred HHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHH
Q 004394 160 LKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (756)
Q Consensus 160 ~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~ 197 (756)
..+...+|+....+.+.+.+... +.|++++|.-+|+.
T Consensus 4 ~~iv~~dp~ll~~~~v~~~i~~r-l~D~s~~VR~aav~ 40 (42)
T PF12765_consen 4 SSIVEKDPTLLDSSDVQSAIIRR-LSDSSPSVREAAVD 40 (42)
T ss_pred HHHHhcCccccchHHHHHHHHHH-hcCCChHHHHHHHH
Confidence 33444444444434444444444 34555555555443
No 167
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=72.14 E-value=69 Score=37.58 Aligned_cols=135 Identities=22% Similarity=0.156 Sum_probs=75.0
Q ss_pred HhcCCCccchhhhhhhhcc-CCChhhHHHHHH--HHHHccccCChHHHHHHHHHHHHcCCCChHHHHH-----HHHHHhc
Q 004394 55 MTIGIDVSAVFGEMVMCSA-TSDIVLKKMCYL--YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGL-----ALRSLCS 126 (756)
Q Consensus 55 ~~lG~Dvs~lF~~Vi~l~~-s~d~~~KkL~YL--yl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~L-----ALrtLs~ 126 (756)
.|+|---+.+.-+|..... ++.-.+||=.-+ ++.+|. .+|++-=.||-+. .|.++..|.. |+-..|.
T Consensus 473 ~mLgt~s~eai~dm~tya~ETqhe~i~Rglgig~aLi~yg--rqe~add~I~ell---~d~ds~lRy~G~fs~alAy~GT 547 (926)
T COG5116 473 LMLGTWSVEAIEDMRTYAGETQHERIKRGLGIGFALILYG--RQEMADDYINELL---YDKDSILRYNGVFSLALAYVGT 547 (926)
T ss_pred eeecCCCHHHHHHHHHHhcchhhhhHHhhhhhhhhHhhhh--hHHHHHHHHHHHh---cCchHHhhhccHHHHHHHHhcC
Confidence 3344333334444444333 333345665443 344454 4555554455444 4556777743 3333222
Q ss_pred CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 127 LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 127 I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
+...++..+ +.-..+|.+..|||.|++|+.-++-.+|+.+ +..+ ++|....|+.|.+....+|.--+.
T Consensus 548 -gn~~vv~~l---Lh~avsD~nDDVrRAAViAlGfvc~~D~~~l-----v~tv-elLs~shN~hVR~g~AvaLGiaca 615 (926)
T COG5116 548 -GNLGVVSTL---LHYAVSDGNDDVRRAAVIALGFVCCDDRDLL-----VGTV-ELLSESHNFHVRAGVAVALGIACA 615 (926)
T ss_pred -CcchhHhhh---heeecccCchHHHHHHHHheeeeEecCcchh-----hHHH-HHhhhccchhhhhhhHHHhhhhhc
Confidence 223333322 2224689999999999999998888887765 3333 444556788888777666655444
No 168
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=72.04 E-value=19 Score=34.49 Aligned_cols=84 Identities=18% Similarity=0.120 Sum_probs=56.0
Q ss_pred HHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---ChhhhH-----HHHHHHHHhhcCCC--ChH-
Q 004394 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RVANLV-----EYLVGPLGLGLKDN--NSY- 150 (756)
Q Consensus 82 L~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~~ei~-----e~l~~~v~~~L~d~--~py- 150 (756)
-.-+-++-..+.+++.+--++..|+|-++++||.+.-+||..+-.+ +.+.+- ..+...+.+++.++ .+.
T Consensus 24 ~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~ 103 (140)
T PF00790_consen 24 SLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPET 103 (140)
T ss_dssp HHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHS
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchh
Confidence 3445566666677888889999999999999999999998877654 112211 22444555555433 233
Q ss_pred -HHHHHHHHHHHHhhh
Q 004394 151 -VRTVAVIGVLKLYHI 165 (756)
Q Consensus 151 -VRKkAalal~kl~~~ 165 (756)
||+++.-.+..-...
T Consensus 104 ~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 104 PVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 999988666554443
No 169
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.39 E-value=64 Score=35.20 Aligned_cols=64 Identities=25% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhh
Q 004394 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 138 ~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
..+...+.+.+|-|||.|+.-+.-+--- +-.. .....++.+.++ +.|.++ ..-|+.++..+.+.
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL-~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQL-LKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHH-ccCccc--ccHHHHHHHHHHhh
Confidence 3577888999999999999665544322 1111 012346667776 789888 55566677777653
No 170
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=71.24 E-value=2.3e+02 Score=33.75 Aligned_cols=122 Identities=18% Similarity=0.078 Sum_probs=75.5
Q ss_pred HHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC------C---hhhhHHHHHHHHHhhcCCCChHHH
Q 004394 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------R---VANLVEYLVGPLGLGLKDNNSYVR 152 (756)
Q Consensus 82 L~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I------~---~~ei~e~l~~~v~~~L~d~~pyVR 152 (756)
+.-|.-+.+.+.-.+-.+-++|++.-==+ ||.+-.--|+++..+ . ..++++..+..+.+++..++--||
T Consensus 31 ~a~l~~~~t~~~f~~~flr~vn~IL~~Kk--~~si~dRil~fl~~f~~Y~~~~dpeg~~~V~~~~~h~lRg~eskdk~VR 108 (885)
T COG5218 31 LAELMEMLTAHEFSEEFLRVVNTILACKK--NPSIPDRILSFLKRFFEYDMPDDPEGEELVAGTFYHLLRGTESKDKKVR 108 (885)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhcccc--CCCcHHHHHHHHHHHHHhcCCCChhhhHHHHHHHHHHHhcccCcchhHH
Confidence 33444444555545545566666643222 222222223333322 1 256888888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCc--ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 153 TVAVIGVLKLYHISAPT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 153 KkAalal~kl~~~~p~~--~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
+..+--+..+...-.+. ..-.++++.|.+. +-|+.+.|..-|+.+|+......
T Consensus 109 ~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R-~~DRE~~VR~eAv~~L~~~Qe~~ 163 (885)
T COG5218 109 KRSLQILALLSDVVREIDEVLANGLLEKLSER-LFDREKAVRREAVKVLCYYQEME 163 (885)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHhcc
Confidence 99888777776543321 0013455666666 46999999999999999886543
No 171
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=71.00 E-value=3.6 Score=41.22 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=56.0
Q ss_pred HHHHHcCCCChHHHHHHHHHHhcCChh-hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 104 FLQRDCKDEDPMIRGLALRSLCSLRVA-NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 104 tl~KDL~s~Np~iR~LALrtLs~I~~~-ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
.+.+=..|+|+.+|-.|+-++...... .-.+.+...+..++.|++.||||..+-++..++..+|+.+
T Consensus 109 ~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v 176 (197)
T cd06561 109 LLEEWAKSENEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERV 176 (197)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 444556789999998888887775444 5678888889999999999999999999999999998876
No 172
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=70.71 E-value=1.3e+02 Score=33.08 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHhcC---ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 004394 112 EDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (756)
Q Consensus 112 ~Np~iR~LALrtLs~I---~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~ 164 (756)
.|+...+.++.+++.= ...++-+.++..+++++.|+.+-|||.-+.++..++.
T Consensus 35 ~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 35 SNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHh
Confidence 5676666666666652 1467788999999999999999999999999999987
No 173
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=70.40 E-value=77 Score=36.53 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=93.3
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCccc-----------CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHH
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAPTCI-----------DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~~~~-----------~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~ 214 (756)
+...-||..|..|+....+.-|..+. ++.-.+.|..+=|+|+++-..+.|+.++..|..-.
T Consensus 7 ~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gs-------- 78 (728)
T KOG4535|consen 7 SYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGS-------- 78 (728)
T ss_pred hHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhh--------
Confidence 34456788888887765544333210 12223444443368999999999999998886421
Q ss_pred HHHHhhccHHHHHHHHHH-hccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HhcccchHHHHHHHHHHHhhcccc
Q 004394 215 REREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED-RLQHANGAVVLSTIKVFLHLTLSM 292 (756)
Q Consensus 215 ~~~~~ll~~~~~~~Ll~~-l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~-~L~~~n~aVvleaik~ii~l~~~~ 292 (756)
|+.+..-+.. -..+.||.....-.++..| ..+.. +.....+-|+-.|+||+-.+-...
T Consensus 79 --------k~fls~a~~~~~~~ftpf~v~~a~si~~~~------------r~l~~~l~~e~~~~~~tq~~kcla~lv~~~ 138 (728)
T KOG4535|consen 79 --------KQFLSVAEDTSDHAFTPFSVMIACSIRELH------------RCLLLALVAESSSQTVTQIIKCLANLVSNA 138 (728)
T ss_pred --------HHHHHHHhccCCcCCCchHHHHHHHHHHHH------------HHHHHHHHHhcCchhHHHHHHHHHHHHhcC
Confidence 1111111110 1235666544333332222 22222 223456778889999887765433
Q ss_pred c--hhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 004394 293 T--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (756)
Q Consensus 293 ~--~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~ 333 (756)
+ .++...+.+..+-+..++.++|+|++.-+|-.+..|+..+
T Consensus 139 p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 139 PYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred chHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 2 2333445556666677888999999999999988887643
No 174
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.25 E-value=92 Score=37.97 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=93.3
Q ss_pred HHHHHhhc--CCCcchHHHHHHHHHHHHhhC--Ccc-----------------ccc---ccceeeec-CCCCHHHHHHHH
Q 004394 305 APLLTLVS--SGSPEQSYAVLSHLHILVMRA--PFI-----------------FAS---DYKHFYCQ-YNEPSYVKKLKL 359 (756)
Q Consensus 305 ~~L~~LLs--s~~~nirYvaL~~l~~L~~~~--p~l-----------------f~~---~~~~f~c~-~~dp~~IK~~kL 359 (756)
+||+..|. -.|+|+--++|+.+..+..+. |.+ |.. ++..+.|. ..+|.+||+-++
T Consensus 64 k~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aI 143 (970)
T KOG0946|consen 64 KPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAI 143 (970)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHH
Confidence 35555553 257888888888888777654 211 111 22222222 467899999999
Q ss_pred HHHHHhcCC--CCHHHH-------HHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh------hHHHHHHHHHhhhcC--
Q 004394 360 EMLTAVANE--SNTYEI-------VTELCEYAANVDIPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEK-- 422 (756)
Q Consensus 360 dIL~~L~n~--~Nv~~I-------v~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~------~~~vd~Ll~LL~~~~-- 422 (756)
+++.++... .-++++ +..|+.-+++.-.-+|.++|.-+..+....+.+ +-.+++|+++++..|
T Consensus 144 qLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~ 223 (970)
T KOG0946|consen 144 QLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGL 223 (970)
T ss_pred HHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999997533 334443 456667777766677888888777776555542 357789999998754
Q ss_pred --chhhHHHHHHHHHHHhhCCC
Q 004394 423 --DYVTAEALVLVKDLLRKYPQ 442 (756)
Q Consensus 423 --~~v~~E~i~~i~~Il~~~p~ 442 (756)
.-|+.+|...+-++++++-.
T Consensus 224 dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 224 DGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred CCcchHHHHHHHHHHHHhhCcc
Confidence 57999999999999987654
No 175
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=69.88 E-value=2.4e+02 Score=37.49 Aligned_cols=178 Identities=12% Similarity=0.120 Sum_probs=100.4
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhc--CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCS--LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP 177 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~--I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~ 177 (756)
-+-+.|+|-..+.- +--.+--+++.. ....+....+..-...++..+++-||.-++.....+|......+ +++.+.
T Consensus 399 ~ie~ilkkKI~~g~-it~~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~-qqeVv~ 476 (1426)
T PF14631_consen 399 SIEKILKKKIKSGH-ITEQLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYC-QQEVVG 476 (1426)
T ss_dssp HHHHHHHHHHTTT--S-HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHH-HHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchh-HHHHHH
Confidence 34456666666541 111122222222 23455667777777788899999999999999999998764322 344555
Q ss_pred HHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCC---C
Q 004394 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP---L 254 (756)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p---~ 254 (756)
.|... ..+.+..-+.+|+.+|.++...+++.- .-....+..+++.+...++--.-++.++|....- .
T Consensus 477 ~Lvth-i~sg~~~ev~~aL~vL~~L~~~~~~~l---------~~fa~~l~giLD~l~~Ls~~qiR~lf~il~~La~~~~~ 546 (1426)
T PF14631_consen 477 ALVTH-IGSGNSQEVDAALDVLCELAEKNPSEL---------QPFATFLKGILDYLDNLSLQQIRKLFDILCTLAFSDSS 546 (1426)
T ss_dssp HHHHH-HHH--HHHHHHHHHHHHHHHHH-HHHH---------HHTHHHHHGGGGGGGG--HHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHH-HcCCcHHHHHHHHHHHHHHHhccHHHH---------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCcc
Confidence 55554 345566667899999999987665311 0011245556666666666555666666665431 1
Q ss_pred C-hhHHHHHHHHHHHHhcccchHH----HHHHHHHHHhhc
Q 004394 255 D-SNEIFDIMNLLEDRLQHANGAV----VLSTIKVFLHLT 289 (756)
Q Consensus 255 d-~~e~~~il~~l~~~L~~~n~aV----vleaik~ii~l~ 289 (756)
. ..-..++.-.+...|.+++.-. +++|+..+-++.
T Consensus 547 ~~s~i~del~ivIRKQLss~~~~~K~~GIIGav~~i~~la 586 (1426)
T PF14631_consen 547 SSSSIQDELHIVIRKQLSSSNPKYKRIGIIGAVMMIKHLA 586 (1426)
T ss_dssp ---HHHHHHHHHHHHHHT-SSHHHHHHHHHHHHHHHHHTT
T ss_pred cchhhHHHHHHHHHHhhcCCcHHHHHHhHHHHHHHHHHHH
Confidence 1 1222345556677888877543 556666665554
No 176
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.25 E-value=2.4e+02 Score=34.96 Aligned_cols=66 Identities=26% Similarity=0.228 Sum_probs=54.9
Q ss_pred HHHHcCCCChHHHHHHHHHHhcCCh------hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 105 LQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 105 l~KDL~s~Np~iR~LALrtLs~I~~------~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
-.--+.|+-+.+||-||+.|..+-- ..+-+-+.......|.|.++||==.|+-++..++.++|+.+
T Consensus 732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~i 803 (982)
T KOG4653|consen 732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDI 803 (982)
T ss_pred HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhh
Confidence 3344567889999999999998733 33556778888899999999999999999999999999876
No 177
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=68.23 E-value=89 Score=34.73 Aligned_cols=200 Identities=16% Similarity=0.159 Sum_probs=95.8
Q ss_pred ChhHHHHHHHH-HHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHhhcCC
Q 004394 237 SEWAQCLVLEL-VAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSG 314 (756)
Q Consensus 237 ~~W~Qi~IL~l-L~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~-~~~~~l~rl~~~L~~LLss~ 314 (756)
.|+|...+|+- +....-.|.++..+.++.+...+.+ ..+++++++.+++......+ ++++..+.=.+.++..|.+.
T Consensus 89 qpfG~~sLlQrifs~~L~~d~~~~~k~i~~le~~i~~--~~~~~~~ik~~v~~~~~~~~~ir~~s~~~~~~iv~~IL~~~ 166 (341)
T PF12825_consen 89 QPFGGRSLLQRIFSMVLNDDIKEFEKEIDKLEKKIGD--SPEMCEKIKAFVYAPREEKDEIREESEEENEDIVVAILRSS 166 (341)
T ss_pred CCCCcCcHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchHHHHhCC
Confidence 34454455542 2333344556666667777665544 68889999988874422111 22221111112344555543
Q ss_pred C--cchHHHHHHHHHHHHhhCCccc---------c-ccccee-eecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 004394 315 S--PEQSYAVLSHLHILVMRAPFIF---------A-SDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEY 381 (756)
Q Consensus 315 ~--~nirYvaL~~l~~L~~~~p~lf---------~-~~~~~f-~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Y 381 (756)
+ |.+.-..+..+..--..+-... . ..-..| .|+.==-.++|.+=-+.+..+..+....++++++..-
T Consensus 167 ~~~p~L~~~~~~~v~~sy~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l~~r~RDk~~~~~l~~e~~~~qllkd~v~i 246 (341)
T PF12825_consen 167 DIEPKLSPEQLQRVLESYKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKLYLRKRDKEQMIQLWCEPELTQLLKDLVTI 246 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhccccCCCccchhhHHHHHHHHHHHHHHHHhhHHHHHHHHcChhHHHHHHHHHHH
Confidence 3 4444333333321111110000 0 000001 0110001234444444555555555566666655542
Q ss_pred hhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcC----chhhHHHHHHHHHHHhhCCCc
Q 004394 382 AANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEK----DYVTAEALVLVKDLLRKYPQW 443 (756)
Q Consensus 382 l~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~----~~v~~E~i~~i~~Il~~~p~~ 443 (756)
. -+.+++ |-+.+.+...+.+...+++-++++++... ..-...++..+.++++++.+.
T Consensus 247 f---Yepl~r--v~k~a~l~~~l~d~q~Fi~DlI~~~~~~~~~~~~~~~~~~V~~~v~Ll~rH~~~ 307 (341)
T PF12825_consen 247 F---YEPLVR--VHKAADLSEALSDFQKFIDDLIKLVEKLRNGSGSSDPFPSVEDFVDLLDRHEQS 307 (341)
T ss_pred H---HHHHHH--HHHhcCHHHHHHHHHHHHHHHHHHHHHhhcccccCCchhHHHHHHHHHHHHHHH
Confidence 1 122333 44555666666667778888888776422 123456677888999887653
No 178
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=68.18 E-value=3.1e+02 Score=34.17 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=62.9
Q ss_pred CChhHHHHHHHHHHhhCCC---ChhHHHHHHHHHHHHh-cccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhh
Q 004394 236 FSEWAQCLVLELVAKYVPL---DSNEIFDIMNLLEDRL-QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311 (756)
Q Consensus 236 ~~~W~Qi~IL~lL~~y~p~---d~~e~~~il~~l~~~L-~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LL 311 (756)
-.|.+--+++-.+.+|... ++.-...+++.....+ .+..+-|-..|++++..+.. +.+-...+..+...|..+.
T Consensus 462 e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~L~qla 539 (1005)
T KOG2274|consen 462 ESPFLLLRAFLTISKFSSSTVINPQLLQHFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDGLLQLA 539 (1005)
T ss_pred cCHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHHHHHHc
Confidence 4666666777777776533 3333344555444443 35566788899998887763 2222333344555566777
Q ss_pred cCCCcchHHHHHHHHHHHHhhCCc
Q 004394 312 SSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 312 ss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
+..+.++--+..+.|...+..+|+
T Consensus 540 s~~s~evl~llmE~Ls~vv~~dpe 563 (1005)
T KOG2274|consen 540 SKSSDEVLVLLMEALSSVVKLDPE 563 (1005)
T ss_pred ccccHHHHHHHHHHHHHHhccChh
Confidence 767788888888899888888875
No 179
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.22 E-value=48 Score=32.05 Aligned_cols=81 Identities=16% Similarity=0.037 Sum_probs=58.3
Q ss_pred HHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Ch----hhh-HHHHHHHHHhhcCC-CChHHHHHH
Q 004394 85 LYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANL-VEYLVGPLGLGLKD-NNSYVRTVA 155 (756)
Q Consensus 85 Lyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~----~ei-~e~l~~~v~~~L~d-~~pyVRKkA 155 (756)
|-++-..+.+++.+--++..|+|-++++||.+.-+||.-+-.+ +. .++ ...+...+.+++.+ .++-||++.
T Consensus 22 l~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~ki 101 (144)
T cd03568 22 LDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKL 101 (144)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHH
Confidence 3355555666777788999999999999999999998877553 11 122 24555667777777 788999998
Q ss_pred HHHHHHHhhh
Q 004394 156 VIGVLKLYHI 165 (756)
Q Consensus 156 alal~kl~~~ 165 (756)
...+......
T Consensus 102 l~li~~W~~~ 111 (144)
T cd03568 102 REVVKQWADE 111 (144)
T ss_pred HHHHHHHHHH
Confidence 8877665543
No 180
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=67.21 E-value=1.5e+02 Score=33.70 Aligned_cols=73 Identities=11% Similarity=0.062 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc--cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~--~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
+-...+..+..++.+++|.-|...-..+.++|.+.+..- ....+...+.+.+-....+..++-++-.+..|..
T Consensus 130 i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~ 204 (409)
T PF01603_consen 130 IDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIIN 204 (409)
T ss_dssp S-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHh
Confidence 334555667788888999999999999999998877753 1122233444443335667778888888888865
No 181
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=67.10 E-value=3.5e+02 Score=34.37 Aligned_cols=216 Identities=18% Similarity=0.098 Sum_probs=116.5
Q ss_pred ChHHHHHHHHHHHHcCC----CCh-HHHHHHHHHHhc--CChhhhHHHHHHHHHhhcCCC--------ChHHHHHHHHHH
Q 004394 95 PDLALLTINFLQRDCKD----EDP-MIRGLALRSLCS--LRVANLVEYLVGPLGLGLKDN--------NSYVRTVAVIGV 159 (756)
Q Consensus 95 ~el~lL~iNtl~KDL~s----~Np-~iR~LALrtLs~--I~~~ei~e~l~~~v~~~L~d~--------~pyVRKkAalal 159 (756)
++++.-++-+..- +-+ ++. +--|+||--|+. +-.+..++.+.|.|.++|.-. ...||-.|+..+
T Consensus 374 ~~Lad~vi~svid-~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~ 452 (1133)
T KOG1943|consen 374 PELADQVIGSVID-LFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVC 452 (1133)
T ss_pred HHHHHHHHHHHHH-hcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHH
Confidence 5666666665554 332 222 334566665554 556888999999999998532 358999999998
Q ss_pred HHHhhhc-CCcccCCCchHHHHHhH----hcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc
Q 004394 160 LKLYHIS-APTCIDADFPPTLKHLM----LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK 234 (756)
Q Consensus 160 ~kl~~~~-p~~~~~~~~i~~L~~lL----L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~ 234 (756)
--+++-+ |+.+ ..+...|...| +-|++..+..+|.+|+.|..-+.++. |....+++..-+..+-+
T Consensus 453 WAf~Rays~~~l--~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~-----p~Gi~Lis~~dy~sV~~--- 522 (1133)
T KOG1943|consen 453 WAFARAYSPSDL--KPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNF-----PHGISLISTIDYFSVTN--- 522 (1133)
T ss_pred HHHHhcCChhhh--hHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCC-----CCchhhhhhcchhhhhh---
Confidence 8888865 4444 23444333332 46999999999999999987665432 11112221111111111
Q ss_pred cCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHH-HhcccchHHHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHhhc
Q 004394 235 EFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED-RLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVS 312 (756)
Q Consensus 235 ~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~-~L~~~n~aVvleaik~ii~l~~~~~~-~~~~~l~rl~~~L~~LLs 312 (756)
..|-|+++. .+..+-+.-...+++.+.. .+.|=...+-..++.++-.+....++ +...++ ++|+.-..
T Consensus 523 rsNcy~~l~------~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L----~~lld~~l 592 (1133)
T KOG1943|consen 523 RSNCYLDLC------VSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVL----PPLLDSTL 592 (1133)
T ss_pred hhhHHHHHh------HHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccch----hhhhhhhc
Confidence 122344322 1111122223334444333 25666777777777777665432222 111111 23333333
Q ss_pred CCCcchHHHHHHHHHHHHh
Q 004394 313 SGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 313 s~~~nirYvaL~~l~~L~~ 331 (756)
+++.+.|....-....++.
T Consensus 593 s~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 593 SKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred CCChHHhhhhHHHHHHHHH
Confidence 4677777665555554443
No 182
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=65.88 E-value=68 Score=39.62 Aligned_cols=135 Identities=15% Similarity=0.229 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc-cccccccee-----eecCCCCHHHHHHHHHHHHHhcCCC
Q 004394 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHF-----YCQYNEPSYVKKLKLEMLTAVANES 369 (756)
Q Consensus 296 ~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~-lf~~~~~~f-----~c~~~dp~~IK~~kLdIL~~L~n~~ 369 (756)
+|..+..+.+.|++...+-+.-+|-.-|..+..++.+-|. ++-+++..+ .|+.-.|..+|..+++.+..+..+.
T Consensus 861 kQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~ 940 (1030)
T KOG1967|consen 861 KQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTES 940 (1030)
T ss_pred HHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhc
Confidence 5677778888888877765666777777788878877775 455555432 3666777789999998888776553
Q ss_pred ------CHHHHHHHHHHHhhhCC---HHHHHHHHHHHHHHHhhcCCh------hHHHHHHHHHhhhcCchhhHHHH
Q 004394 370 ------NTYEIVTELCEYAANVD---IPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEAL 430 (756)
Q Consensus 370 ------Nv~~Iv~EL~~Yl~~~D---~~~~~~~I~aIg~lA~k~~~~------~~~vd~Ll~LL~~~~~~v~~E~i 430 (756)
-+..+|.-|+.--.+.| ...|..+++.++.+.+..|.. ...+..+.+.|+....-|..|++
T Consensus 941 ~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv 1016 (1030)
T KOG1967|consen 941 ETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAV 1016 (1030)
T ss_pred cccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHH
Confidence 35566766666555555 446677888888888877632 23455555555555444555544
No 183
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=65.49 E-value=3.5e+02 Score=33.82 Aligned_cols=93 Identities=16% Similarity=0.161 Sum_probs=61.9
Q ss_pred CCCcchHHHHHHHHHHHHh-hCC-ccccccc-ceeeec--------CCCCHHHHHHHHHH--HHHhc-CCCCHHHHHHHH
Q 004394 313 SGSPEQSYAVLSHLHILVM-RAP-FIFASDY-KHFYCQ--------YNEPSYVKKLKLEM--LTAVA-NESNTYEIVTEL 378 (756)
Q Consensus 313 s~~~nirYvaL~~l~~L~~-~~p-~lf~~~~-~~f~c~--------~~dp~~IK~~kLdI--L~~L~-n~~Nv~~Iv~EL 378 (756)
.+||---.++......|.. .+| .-|..++ ++.+|- .|||..|++.-|.+ ...|+ ++.=....+.-|
T Consensus 181 EKDPRnLml~F~l~~~i~s~~~~l~~F~edlFeV~~CYFPI~Fkppk~D~~~I~reDL~~sLr~al~stP~Fa~~~lp~L 260 (1030)
T KOG1967|consen 181 EKDPRNLMLVFSLVKEISSLNFPLGPFTEDLFEVIACYFPITFKPPKDDTITIRREDLKASLRSALVSTPSFAPFALPLL 260 (1030)
T ss_pred CCCchhhHHHHHHHHHHhhccCCCCccHHHHHHHhheeeeeeccCCCCCcccccHHHHHHHHHHHHhcCccchhhHHHHH
Confidence 3555555566666666666 333 1244443 455563 47887788665544 44443 556677778888
Q ss_pred HHHhhhCCHHHHHHHHHHHHHHHhhcC
Q 004394 379 CEYAANVDIPIARESIRAVGKIALQQY 405 (756)
Q Consensus 379 ~~Yl~~~D~~~~~~~I~aIg~lA~k~~ 405 (756)
.|=+...++..+-+....+-.|+.+|.
T Consensus 261 lEKL~as~~~~K~DsL~~L~ec~~~yg 287 (1030)
T KOG1967|consen 261 LEKLNASDPSAKVDSLDTLNECCLKYG 287 (1030)
T ss_pred HHHhccccchhhhhHHHHHHHHHHHhC
Confidence 888888888888889999989998886
No 184
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.32 E-value=3.5e+02 Score=33.69 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=54.1
Q ss_pred HHHccccCChHHHHHHHHHHHHc-CCCChHHHHHHHHHHhcCChhhhHHHHHHH---HHhhcC--CCChHHHHHHHHHHH
Q 004394 87 VGNYAKVNPDLALLTINFLQRDC-KDEDPMIRGLALRSLCSLRVANLVEYLVGP---LGLGLK--DNNSYVRTVAVIGVL 160 (756)
Q Consensus 87 l~~~~~~~~el~lL~iNtl~KDL-~s~Np~iR~LALrtLs~I~~~ei~e~l~~~---v~~~L~--d~~pyVRKkAalal~ 160 (756)
+++++.++|--.--+++.+.+.+ ++.+..-.-..|+++|.-+-.++-++..+. +...+. .-.+.+|-++.-|+.
T Consensus 536 ~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIG 615 (982)
T KOG2022|consen 536 LSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIG 615 (982)
T ss_pred HHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHH
Confidence 44556667765556778888888 455544445668888887776665554433 333332 346789999999999
Q ss_pred HHhh-hcCCcc
Q 004394 161 KLYH-ISAPTC 170 (756)
Q Consensus 161 kl~~-~~p~~~ 170 (756)
++.. .-||..
T Consensus 616 yvls~~~pEe~ 626 (982)
T KOG2022|consen 616 YVLSRLKPEEI 626 (982)
T ss_pred HHHHhccHHhH
Confidence 8875 335543
No 185
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=65.02 E-value=50 Score=31.32 Aligned_cols=84 Identities=14% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC---h----hhhH-HHHHHHHHhhcCCCC--hHHH
Q 004394 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR---V----ANLV-EYLVGPLGLGLKDNN--SYVR 152 (756)
Q Consensus 83 ~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~---~----~ei~-e~l~~~v~~~L~d~~--pyVR 152 (756)
.-+.++-..+.+++..--++..++|-++++||.+.-+||+-+-.+. . .+++ ..+...+.+.+.++. +.||
T Consensus 20 ~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk 99 (133)
T smart00288 20 LILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVK 99 (133)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHH
Confidence 3455666677778888899999999999999999999998886641 1 2222 335556667776543 4499
Q ss_pred HHHHHHHHHHhhhc
Q 004394 153 TVAVIGVLKLYHIS 166 (756)
Q Consensus 153 KkAalal~kl~~~~ 166 (756)
+++...+..-....
T Consensus 100 ~kil~li~~W~~~f 113 (133)
T smart00288 100 KRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99888877665543
No 186
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.64 E-value=2.1e+02 Score=31.01 Aligned_cols=96 Identities=19% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccC--CCchHHHHH
Q 004394 104 FLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID--ADFPPTLKH 181 (756)
Q Consensus 104 tl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~--~~~i~~L~~ 181 (756)
++.-|+-+.+| -|.-.+...+.....+ ...++.+.+..+++|++-+|+..+.++....+..-.. .++++.+.+
T Consensus 79 ~li~dll~~~~-~~~~~~~~~~~~~~~~----~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~ 153 (312)
T PF03224_consen 79 TLIDDLLSDDP-SRVELFLELAKQDDSD----PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQ 153 (312)
T ss_dssp HHHHHHHH-SS-SSHHHHHHHHH-TTH------HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCH-HHHHHHHHhcccccch----hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHH
Confidence 33444444444 3334444444333333 3445555888899999999999999999877664311 134444444
Q ss_pred hH---hcCCChhHHHHHHHHHHHHHh
Q 004394 182 LM---LNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 182 lL---L~D~d~~Vv~~Al~aL~eI~~ 204 (756)
.| ++..+..++..|+.+|.++.+
T Consensus 154 ~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 154 WLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp HHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred HHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 42 223556677888888888875
No 187
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=64.26 E-value=2.2e+02 Score=31.07 Aligned_cols=185 Identities=19% Similarity=0.138 Sum_probs=96.3
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhhc--CCcccC--CCchHHHHHhHhcCCC--hhHHHHHHHHHHHHHhhcccchhH
Q 004394 139 PLGLGLKDNNSYVRTVAVIGVLKLYHIS--APTCID--ADFPPTLKHLMLNDPD--PQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 139 ~v~~~L~d~~pyVRKkAalal~kl~~~~--p~~~~~--~~~i~~L~~lLL~D~d--~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
.....+.+++.-.|..|.-++.+++... ++.+.+ ..+.+.+.+. ++-.. -.+.+.-+..|.-|.-..+....+
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~-lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKS-LKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 4445567888999999999999988543 333311 1223444444 23333 233332222222222100111111
Q ss_pred HHHHHHhhccHHHHHHHHHHhccCCh--hHHHHHHHHH---HhhCCCChhHHHHHHHHHHH-----Hhccc---------
Q 004394 213 ASREREALISKPVIYYLLNRIKEFSE--WAQCLVLELV---AKYVPLDSNEIFDIMNLLED-----RLQHA--------- 273 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~l~~~~~--W~Qi~IL~lL---~~y~p~d~~e~~~il~~l~~-----~L~~~--------- 273 (756)
.+ ......|.+.+.+.+. =....++..| ..++-.+.++....++.+.. .++..
T Consensus 126 i~--------~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 126 IF--------EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred HH--------HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 11 1223334444444332 2333445444 44556677777755555442 22211
Q ss_pred -chHHHHHHHHHHHhhccccc--hhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 004394 274 -NGAVVLSTIKVFLHLTLSMT--DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (756)
Q Consensus 274 -n~aVvleaik~ii~l~~~~~--~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~ 333 (756)
+++|+-+|+..-.-+-...+ .+. ..++...+.|..+|.+.+.++|..|=++|..|....
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~-~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLE-DLLEEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 24677777775433321112 233 345666777899999999999999999998886553
No 188
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=63.70 E-value=7.8 Score=29.28 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHH
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIG 158 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAala 158 (756)
+.+...|.+.+.|++|-||++|+-.
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 3677788899999999999998753
No 189
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=63.50 E-value=12 Score=27.47 Aligned_cols=28 Identities=25% Similarity=0.124 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 004394 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (756)
Q Consensus 136 l~~~v~~~L~d~~pyVRKkAalal~kl~ 163 (756)
.++.+.++|.+.++.||+.|+-|+..+-
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 5677888888889999999988887653
No 190
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=60.98 E-value=3.9e+02 Score=32.81 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
+....+..+..+..|+=+.||+.|+-.++-+..--|+.- ..++..+... +.|++--+.+.|..+|..+.+..|.
T Consensus 301 ly~rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE--~~LL~~lVNK-lGDpqnKiaskAsylL~~L~~~HPn 374 (988)
T KOG2038|consen 301 LYFRFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE--NNLLVLLVNK-LGDPQNKIASKASYLLEGLLAKHPN 374 (988)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHh-cCCcchhhhhhHHHHHHHHHhhCCc
Confidence 444555666666778889999999999999998888863 4556666666 5899999999999999999887765
No 191
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=60.45 E-value=2.4e+02 Score=30.12 Aligned_cols=203 Identities=18% Similarity=0.178 Sum_probs=107.9
Q ss_pred CChhHHHHHHHHHHhhC---C---CChhHHHHHHHHHHHHhcccc-hHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Q 004394 236 FSEWAQCLVLELVAKYV---P---LDSNEIFDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLL 308 (756)
Q Consensus 236 ~~~W~Qi~IL~lL~~y~---p---~d~~e~~~il~~l~~~L~~~n-~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~ 308 (756)
-++-...+-+++|+... | -+.++..-+++....+|.... -.-.+.+...++.+.....+.. .++...+.
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~----~~i~~~l~ 86 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA----VKILRSLF 86 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH----HHHHHHHH
Confidence 34444445555554331 2 134556666777777774321 1112444445554443222221 22222222
Q ss_pred Hh--hcCCCcchHHHHHHHHHHHHhhCCccccccccee------eecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004394 309 TL--VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF------YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE 380 (756)
Q Consensus 309 ~L--Lss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f------~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~ 380 (756)
.- +.+-....||.+++.+..++.++.......-..| .|....|+--=+...+++..+...-.+...+++|.+
T Consensus 87 ~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd 166 (262)
T PF14500_consen 87 QNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFD 166 (262)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 21 2234556899999999999988754332111111 133333333444555666666555444556666654
Q ss_pred ----Hhh-----h-CCH-H-HHHHHHHHHHHHHhhcCCh-hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCC
Q 004394 381 ----YAA-----N-VDI-P-IARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ 442 (756)
Q Consensus 381 ----Yl~-----~-~D~-~-~~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~ 442 (756)
|.. - .|+ . -+.++..++..|-...|.. .+++..+++=|......+..+++..+..-+.+|+.
T Consensus 167 ~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~ 241 (262)
T PF14500_consen 167 VFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYGA 241 (262)
T ss_pred HhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCCH
Confidence 332 1 122 1 2345555555554433433 57888888888887777888888888888888864
No 192
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=60.40 E-value=2.2e+02 Score=29.69 Aligned_cols=158 Identities=20% Similarity=0.211 Sum_probs=90.6
Q ss_pred CCChHHHHHHHHHHhcCChhh--hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh----
Q 004394 111 DEDPMIRGLALRSLCSLRVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML---- 184 (756)
Q Consensus 111 s~Np~iR~LALrtLs~I~~~e--i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL---- 184 (756)
..||....-.|+++..+...+ ..+.+...+..+...++..++-.+.--+.++....+..+ +.|+.+|.
T Consensus 12 ~~~~~~~~~~L~~L~~l~~~~~~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~~L~~~~~ 85 (234)
T PF12530_consen 12 ISDPELQLPLLEALPSLACHKNVCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQPLLLLLIL 85 (234)
T ss_pred CCChHHHHHHHHHHHHHhccCccchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHh
Confidence 455666666666666554433 344444455555555555555566666667777665443 22332211
Q ss_pred --------cCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh-ccCChhHHHHHHHHHHhhCCCC
Q 004394 185 --------NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI-KEFSEWAQCLVLELVAKYVPLD 255 (756)
Q Consensus 185 --------~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l-~~~~~W~Qi~IL~lL~~y~p~d 255 (756)
.+....+..+....+.+++...|.... +.+..+-..+ ...++=.|..-|+.+..+++.+
T Consensus 86 r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~------------~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 86 RIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV------------DLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred hcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH------------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 133344555545667777776665221 1233333344 6788889999999999999766
Q ss_pred hhHHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Q 004394 256 SNEIFDIMNLLEDRLQHAN-GAVVLSTIKVFL 286 (756)
Q Consensus 256 ~~e~~~il~~l~~~L~~~n-~aVvleaik~ii 286 (756)
--+.......+.+.+.... +.|+-+-.+.+.
T Consensus 154 vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~ 185 (234)
T PF12530_consen 154 VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFA 185 (234)
T ss_pred hccHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence 5556666677777775433 455554444443
No 193
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=60.39 E-value=2.5e+02 Score=33.87 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
+..++..-+......+++.+|+.+.--+.++....|+.. =...++++|.+.+.+++.+.++..+-+..
T Consensus 439 ~~~~~q~L~~i~~~~p~~~lR~~~~~ll~~iL~~~p~~~----rf~~i~dlLe~c~~~~~k~~~I~~lKd~i 506 (633)
T PF08568_consen 439 FMQFLQALLLISVYCPSPELRKIAFTLLTRILHLFPEET----RFKFIRDLLENCPFESLKASAIGWLKDEI 506 (633)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCcHh----HHHHHHHHHhcCCCHhHHHHHHHHHHHHH
Confidence 344444444455578999999999999999999999864 35667777777889999999999987764
No 194
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=59.09 E-value=3.4e+02 Score=31.42 Aligned_cols=379 Identities=13% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC---ChhhhHHHHHHHHHhhcCCCCh-HHHHHHHHHHHHHhhhcCC--cccCCCchHHHHHhHhcCCChh
Q 004394 117 RGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNS-YVRTVAVIGVLKLYHISAP--TCIDADFPPTLKHLMLNDPDPQ 190 (756)
Q Consensus 117 R~LALrtLs~I---~~~ei~e~l~~~v~~~L~d~~p-yVRKkAalal~kl~~~~p~--~~~~~~~i~~L~~lLL~D~d~~ 190 (756)
|.-|++.++.. -..+-++.+-...+.++.+..| .+|+.|..=+..+.+..-+ ...+..|...+.+- -.|+|-.
T Consensus 7 R~~a~~~l~~~i~~~~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~-~~~~d~~ 85 (464)
T PF11864_consen 7 RIKAAEELCESIQKYPLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDP-SNDDDFD 85 (464)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcC-CCchhHH
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc------------------------cCChhHHHHHHH
Q 004394 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------------------EFSEWAQCLVLE 246 (756)
Q Consensus 191 Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~------------------------~~~~W~Qi~IL~ 246 (756)
-...|+.+|.+=+++-.....+.-+ .+.+-+.... +.++=....+|+
T Consensus 86 ~~l~aL~~LT~~Grdi~~~~~~i~~---------~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~ 156 (464)
T PF11864_consen 86 LRLEALIALTDNGRDIDFFEYEIGP---------FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQ 156 (464)
T ss_pred HHHHHHHHHHcCCcCchhcccchHH---------HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHH
Q ss_pred HHHhhCCC-----ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHH
Q 004394 247 LVAKYVPL-----DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYA 321 (756)
Q Consensus 247 lL~~y~p~-----d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYv 321 (756)
++.....- ++++...+++.+..+-..++....++++--++..-.....+-...+..+...|.+..+.. +..=.
T Consensus 157 ~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~--~l~~~ 234 (464)
T PF11864_consen 157 FLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSV--SLCKP 234 (464)
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccc--ccchh
Q ss_pred HHHHHHHHH-hhCCcccccccceee----ecCCCCHHHHHHHHHHHHHhcCCC--------CHHH--HHHHHHHHhhhCC
Q 004394 322 VLSHLHILV-MRAPFIFASDYKHFY----CQYNEPSYVKKLKLEMLTAVANES--------NTYE--IVTELCEYAANVD 386 (756)
Q Consensus 322 aL~~l~~L~-~~~p~lf~~~~~~f~----c~~~dp~~IK~~kLdIL~~L~n~~--------Nv~~--Iv~EL~~Yl~~~D 386 (756)
+.+.|..|+ .......-..+-.|. -...++..+-+=++.++-.+.-.. +... ++..|..-+...+
T Consensus 235 ~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~ 314 (464)
T PF11864_consen 235 SWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS 314 (464)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Q ss_pred HHHHHHHHHHHHHHH-hhcC----ChhHHHHHHHHHhh-------------------hcCchhhHHHHHHHHHHHhh--C
Q 004394 387 IPIARESIRAVGKIA-LQQY----DVNAIVDRLLQFLE-------------------MEKDYVTAEALVLVKDLLRK--Y 440 (756)
Q Consensus 387 ~~~~~~~I~aIg~lA-~k~~----~~~~~vd~Ll~LL~-------------------~~~~~v~~E~i~~i~~Il~~--~ 440 (756)
.-+.-+++..+-++- .+|. ...| +.+++++. ........+.+..+..+..+ +
T Consensus 315 ~~v~~eIl~~i~~ll~~~~~~~l~~~~W--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ie~L~~~~~~ 392 (464)
T PF11864_consen 315 PRVDYEILLLINRLLDGKYGRELSEEDW--DIILDIIEEIFDKIQPFDSWYSNSSSLDQLSSNLHSLLSSIESLYEQHDF 392 (464)
T ss_pred CeehHHHHHHHHHHHhHhhhhhhcccCc--hHHHHHHHHHHhhccccccccccccchHHHHHHHHHHHHHHHHHHhCCCc
Q ss_pred CCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCCh--HHHHHHHhhhhc-cCChHHHHHHHHHHhhHh
Q 004394 441 PQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA--PYILESLTENWE-EEPSAEVRLHLLTAVMKC 512 (756)
Q Consensus 441 p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~--~~iL~~l~~~f~-~e~~~~Vq~~lLtA~~Kl 512 (756)
...++.+...+.+.. +.+.+..+...+ .--|-.-...++ .+-+..+++.|. .+.++.||...|..+..+
T Consensus 393 ~g~~~~~~~f~~~~~-~~lp~s~~~~vl--~~~~~~~~Ps~~~W~~n~~~ll~~F~~~~~~~~vRi~aL~~l~e~ 464 (464)
T PF11864_consen 393 NGPKDKLFNFFERVH-SYLPDSSALLVL--FYEERSCSPSNPDWLDNLQKLLDRFYNRDRRSEVRIKALDVLEEI 464 (464)
T ss_pred CccHHHHHHHHHHHh-ccCCHHHHHHHH--HHHhcccCCCChHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhhC
No 195
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=58.91 E-value=27 Score=35.22 Aligned_cols=123 Identities=21% Similarity=0.224 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHccccC---Ch-HHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC--------------------------
Q 004394 79 LKKMCYLYVGNYAKVN---PD-LALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------------------------- 128 (756)
Q Consensus 79 ~KkL~YLyl~~~~~~~---~e-l~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~-------------------------- 128 (756)
.||..|=||..++... +. ...-....+ +.|+++-+|+.|+.+++.+-
T Consensus 18 ~~r~l~~yW~~llP~~~~~~~~~~~sLlt~i---l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~t 94 (182)
T PF13251_consen 18 DKRSLFGYWPALLPDSVLQGRPATPSLLTCI---LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSST 94 (182)
T ss_pred CCceeHhhHHHHCCCCCCcCCCCCcchhHHH---HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHH
Confidence 4677888888888766 11 000011122 35889999999999998861
Q ss_pred hhhhHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCcccC----CCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 129 VANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~~~~----~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
...++-.+...+...|.+. ++-+-.-..-|+.-+....|-.-.. ..++..++.+ +.+.|+.|..+++.++.-+.
T Consensus 95 La~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~-l~~~d~~v~v~~l~~~~~l~ 173 (182)
T PF13251_consen 95 LASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPL-LRHRDPNVRVAALSCLGALL 173 (182)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHHH
Confidence 1224445555556666554 3433333333444443333322212 4456677776 68899999999998888775
Q ss_pred hh
Q 004394 204 SL 205 (756)
Q Consensus 204 ~~ 205 (756)
..
T Consensus 174 s~ 175 (182)
T PF13251_consen 174 SV 175 (182)
T ss_pred cC
Confidence 43
No 196
>PF05536 Neurochondrin: Neurochondrin
Probab=58.85 E-value=3.7e+02 Score=31.87 Aligned_cols=178 Identities=15% Similarity=0.160 Sum_probs=101.6
Q ss_pred ChHHHHHHHHHHHHHhhhcCCcccCCCch---HHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHH
Q 004394 148 NSYVRTVAVIGVLKLYHISAPTCIDADFP---PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKP 224 (756)
Q Consensus 148 ~pyVRKkAalal~kl~~~~p~~~~~~~~i---~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~ 224 (756)
++..-+.-+++++..|-..|+...+++++ +.|.+.+.+..+..++.-|+..|..|.....+ ...++...
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G--------~~aLl~~g 140 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG--------AKALLESG 140 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh--------HHHHHhcC
Confidence 67888888999999888888887666665 44555543444458899999999999854433 11233333
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhhCC--------CChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc---
Q 004394 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVP--------LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT--- 293 (756)
Q Consensus 225 ~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p--------~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~--- 293 (756)
.+..|+..+.. .+..+-..++++..... .+......++..+....+.....--++....+-.+-...+
T Consensus 141 ~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~ 219 (543)
T PF05536_consen 141 AVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILP 219 (543)
T ss_pred CHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccc
Confidence 45666666555 55555555555544321 1222333445555555554444444444554443322111
Q ss_pred ---hhHHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHHHHHhhCC
Q 004394 294 ---DVHQQVYERIKAPLLTLVSS-GSPEQSYAVLSHLHILVMRAP 334 (756)
Q Consensus 294 ---~~~~~~l~rl~~~L~~LLss-~~~nirYvaL~~l~~L~~~~p 334 (756)
.....-...+..-|..+|.+ -.+.-|-.+|.....+++...
T Consensus 220 ~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G 264 (543)
T PF05536_consen 220 LESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLG 264 (543)
T ss_pred cccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC
Confidence 01122333444445556655 356678888888888877643
No 197
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=58.58 E-value=18 Score=40.68 Aligned_cols=72 Identities=17% Similarity=0.313 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcccc-hHHHHHHHHHHHhhccccchhHHHHHHHH--HHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 260 FDIMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYERI--KAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 260 ~~il~~l~~~L~~~n-~aVvleaik~ii~l~~~~~~~~~~~l~rl--~~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
++++..+..+|+.++ +.++-=|+.=|.++-...|.. ..++++. +..+..|+++.+||+||-||.++..++..
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g-k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG-KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH-hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 457788888888777 544444444444433222322 2344433 34678899999999999999999988743
No 198
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=57.78 E-value=1.5e+02 Score=35.08 Aligned_cols=151 Identities=13% Similarity=0.024 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCCCccchhhhhh-hhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHH-cCCCChHHHHHHHHHH
Q 004394 47 LFKKVISYMTIGIDVSAVFGEMV-MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD-CKDEDPMIRGLALRSL 124 (756)
Q Consensus 47 ~lkKlI~~~~lG~Dvs~lF~~Vi-~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KD-L~s~Np~iR~LALrtL 124 (756)
.+--=+++...|.. ..+-+.| +++.+.|-.+|--|-+.+..-.--...+ =+|.++..= .+|.|.-+|-.|..++
T Consensus 501 glgig~aLi~ygrq--e~add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~--~vv~~lLh~avsD~nDDVrRAAViAl 576 (926)
T COG5116 501 GLGIGFALILYGRQ--EMADDYINELLYDKDSILRYNGVFSLALAYVGTGNL--GVVSTLLHYAVSDGNDDVRRAAVIAL 576 (926)
T ss_pred hhhhhhhHhhhhhH--HHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc--hhHhhhheeecccCchHHHHHHHHhe
Confidence 33333445555532 1245555 4666666655544444332211111221 233444433 5788999999999999
Q ss_pred hcCChhhhHHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 125 CSLRVANLVEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 125 s~I~~~ei~e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
|=++..+- .+.+....+| .+.+++||--.|.++.-.+.-..+. -..+.|..+ ..|.+.-|..+|+.++.-|.
T Consensus 577 Gfvc~~D~--~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L-~~D~~dfVRQ~AmIa~~mIl 649 (926)
T COG5116 577 GFVCCDDR--DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEAL-MYDTNDFVRQSAMIAVGMIL 649 (926)
T ss_pred eeeEecCc--chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHH-hhCcHHHHHHHHHHHHHHHH
Confidence 87654431 2222333444 4568999999888887666543332 246778776 58999999999988887764
Q ss_pred -hhccc
Q 004394 204 -SLEAS 208 (756)
Q Consensus 204 -~~~~~ 208 (756)
+.+++
T Consensus 650 ~Q~n~~ 655 (926)
T COG5116 650 MQCNPE 655 (926)
T ss_pred hhcCcc
Confidence 34443
No 199
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=57.66 E-value=3.2e+02 Score=30.66 Aligned_cols=135 Identities=19% Similarity=0.196 Sum_probs=79.2
Q ss_pred cCCChhhHHHHHHHHHHccccC---ChH------HHHHHHHHHHHcCC-------CChHHHHHHHHHHhcC-Chh-----
Q 004394 73 ATSDIVLKKMCYLYVGNYAKVN---PDL------ALLTINFLQRDCKD-------EDPMIRGLALRSLCSL-RVA----- 130 (756)
Q Consensus 73 ~s~d~~~KkL~YLyl~~~~~~~---~el------~lL~iNtl~KDL~s-------~Np~iR~LALrtLs~I-~~~----- 130 (756)
++.+-+.|.=+|+.+.+..+.+ |+. +-+.+..+++|+.+ .+..+..-|||++|.+ ..+
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~ 82 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVST 82 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhh
Confidence 4455566666777777665432 222 34668899999987 3557778899999985 223
Q ss_pred ---hhHHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh--cC--CChhHHHHHHHHHHHH
Q 004394 131 ---NLVEYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML--ND--PDPQVVANCLSALQEI 202 (756)
Q Consensus 131 ---ei~e~l~~~v~~~L~d~~-pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL--~D--~d~~Vv~~Al~aL~eI 202 (756)
+....++......+.+++ |=.--++.+.+++.-+..|..+ ..+.++++...+. .+ +...|+.-++.++..+
T Consensus 83 l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~-~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~~l 161 (372)
T PF12231_consen 83 LSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIM-TSDRVERLLAALHNIKNRFPSKSIISERLNIYKRL 161 (372)
T ss_pred CChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCccc-chhhHHHHHHHHHHhhccCCchhHHHHHHHHHHHH
Confidence 333334444455555543 4455556666666666666654 3445555554421 12 3345666666666666
Q ss_pred Hhhccc
Q 004394 203 WSLEAS 208 (756)
Q Consensus 203 ~~~~~~ 208 (756)
....|.
T Consensus 162 l~q~p~ 167 (372)
T PF12231_consen 162 LSQFPQ 167 (372)
T ss_pred HHHHHH
Confidence 655443
No 200
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=57.50 E-value=1.1e+02 Score=35.83 Aligned_cols=171 Identities=15% Similarity=0.054 Sum_probs=0.0
Q ss_pred cCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCC--ChHHHHHHHHHH---hcC-------ChhhhHHHHHHHH
Q 004394 73 ATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE--DPMIRGLALRSL---CSL-------RVANLVEYLVGPL 140 (756)
Q Consensus 73 ~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~--Np~iR~LALrtL---s~I-------~~~ei~e~l~~~v 140 (756)
.+..+..|=|.||.=+..+....+-.+-++.. .+.++ |.-.|.+++.++ ..+ ....+.+.+...+
T Consensus 295 a~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~---~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g 371 (501)
T PF13001_consen 295 ASPRLQEKILSLLSKSVIAATSFPNILQIVFD---GLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQG 371 (501)
T ss_pred CCHHHHHHHHHHHHHhHHHHhCCccHHHHHhc---cccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcC
Q ss_pred HhhcC--------CCChHHHHHHHHHHHHHhhhcCCcc-cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 141 GLGLK--------DNNSYVRTVAVIGVLKLYHISAPTC-IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 141 ~~~L~--------d~~pyVRKkAalal~kl~~~~p~~~-~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
.+.+. ..+.-.|..|..|+..+.+..|..+ .+-+++..|-+- |.+.++.|..+.-.+|..+..
T Consensus 372 ~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~s-L~~~~~evr~sIqeALssl~~------- 443 (501)
T PF13001_consen 372 WPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDS-LEDESPEVRVSIQEALSSLAP------- 443 (501)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHH-hhCcchHHHHHHHHHHHHHHH-------
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCCh----hHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 004394 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLH 287 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~----~e~~~il~~l~~~L~~~n~aVvleaik~ii~ 287 (756)
.|..... .....+...+....++...++.+.|+|..-.
T Consensus 444 --------------------------------------af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~ 485 (501)
T PF13001_consen 444 --------------------------------------AFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANA 485 (501)
T ss_pred --------------------------------------HHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q ss_pred hcccc
Q 004394 288 LTLSM 292 (756)
Q Consensus 288 l~~~~ 292 (756)
+-+..
T Consensus 486 ~fpf~ 490 (501)
T PF13001_consen 486 CFPFS 490 (501)
T ss_pred hCCcc
No 201
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.32 E-value=3.7e+02 Score=31.31 Aligned_cols=110 Identities=18% Similarity=0.249 Sum_probs=69.5
Q ss_pred ChhhHHHHHHHHHHccccCChHHHHHHHHHHHH-cCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHH
Q 004394 76 DIVLKKMCYLYVGNYAKVNPDLALLTINFLQRD-CKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTV 154 (756)
Q Consensus 76 d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KD-L~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKk 154 (756)
+..-|.++-+....+-+.+.++.++++..++|= .-+.|..+-+ . -.++.-+.++....+|..||.
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~-------~-------~~iveKL~klfp~~h~dL~~~ 364 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVME-------Q-------NGIVEKLLKLFPIQHPDLRKA 364 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHH-------h-------ccHHHHHHHhcCCCCHHHHHH
Confidence 345678889999999999999977777665552 2345543221 1 123445677788899999998
Q ss_pred HHHHHHHHhh---hcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 155 AVIGVLKLYH---ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 155 Aalal~kl~~---~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
..+-+..+-- .-|..+ ..++.+.+..+|-+|...++ |+..|+.+.
T Consensus 365 tl~LlfNlSFD~glr~KMv-~~GllP~l~~ll~~d~~~~i---A~~~lYh~S 412 (791)
T KOG1222|consen 365 TLMLLFNLSFDSGLRPKMV-NGGLLPHLASLLDSDTKHGI---ALNMLYHLS 412 (791)
T ss_pred HHHHhhhccccccccHHHh-hccchHHHHHHhCCcccchh---hhhhhhhhc
Confidence 8777665432 112222 46788999887534444444 455566553
No 202
>PF05536 Neurochondrin: Neurochondrin
Probab=55.29 E-value=3.9e+02 Score=31.69 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=50.8
Q ss_pred HHhhcCCCcchHHHHHHHHHHHHhhCCcccc------cccc-eeee--cC-------CCCHHHHHHHHHHHHHhcCCCCH
Q 004394 308 LTLVSSGSPEQSYAVLSHLHILVMRAPFIFA------SDYK-HFYC--QY-------NEPSYVKKLKLEMLTAVANESNT 371 (756)
Q Consensus 308 ~~LLss~~~nirYvaL~~l~~L~~~~p~lf~------~~~~-~f~c--~~-------~dp~~IK~~kLdIL~~L~n~~Nv 371 (756)
+++|++.+.+-||+||-.+.+++...+..-. +-+. .|.- +. -++..-+..++.||...|...++
T Consensus 11 ~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~~~~~~ 90 (543)
T PF05536_consen 11 LSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFCRDPEL 90 (543)
T ss_pred HHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHcCChhh
Confidence 4577777788899999888888765442100 1110 1210 01 14466777778888877775554
Q ss_pred H---H---HHHHHHHHhhhCCH-HHHHHHHHHHHHHH
Q 004394 372 Y---E---IVTELCEYAANVDI-PIARESIRAVGKIA 401 (756)
Q Consensus 372 ~---~---Iv~EL~~Yl~~~D~-~~~~~~I~aIg~lA 401 (756)
. + -+.-|.+.+...+. +...++...+..++
T Consensus 91 a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia 127 (543)
T PF05536_consen 91 ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA 127 (543)
T ss_pred hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH
Confidence 2 2 23333344444333 45555555554444
No 203
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.34 E-value=3.4e+02 Score=29.80 Aligned_cols=61 Identities=23% Similarity=0.150 Sum_probs=46.6
Q ss_pred HHHHHHcCCCChHHHHHHHHHHhcCChh------hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh
Q 004394 103 NFLQRDCKDEDPMIRGLALRSLCSLRVA------NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI 165 (756)
Q Consensus 103 Ntl~KDL~s~Np~iR~LALrtLs~I~~~------ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~ 165 (756)
+.+.+=+.++||-+|..|++.+.++... .--+..++.+.+++.+..| -.-|+.|+.++...
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~ 72 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK 72 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh
Confidence 4566677899999999999888887554 2235677889999999888 56677788777764
No 204
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=53.25 E-value=5.5e+02 Score=32.15 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=132.1
Q ss_pred HHHHHHHHhcCCh----hhhHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhc---CCcccCCCchHHHHHhHhcCCC
Q 004394 117 RGLALRSLCSLRV----ANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHIS---APTCIDADFPPTLKHLMLNDPD 188 (756)
Q Consensus 117 R~LALrtLs~I~~----~ei~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~---p~~~~~~~~i~~L~~lLL~D~d 188 (756)
.+.-+-..+..+. .+....+...++.++..+ .|..=-.|..++.|.-... |+.. ..|.......+..|.-
T Consensus 427 qea~l~a~~~~~~~~~~dd~l~~l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~ 504 (1005)
T KOG2274|consen 427 QEALLVAAESVRIDDANDDKLIELTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVP 504 (1005)
T ss_pred HHHHHHHHhhcccCcchHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCC
Confidence 4444444444443 345566666667776544 5655558999999776643 3332 2334333344456777
Q ss_pred hhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q 004394 189 PQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLED 268 (756)
Q Consensus 189 ~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~ 268 (756)
+-|...|+.+++..+...+ | .-+-+.++.-|+....++++=.-..+++.|...+.-|++.+...-+.+.+
T Consensus 505 ~~~ki~a~~~~~~~~~~~v------l----~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P 574 (1005)
T KOG2274|consen 505 PPVKISAVRAFCGYCKVKV------L----LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICP 574 (1005)
T ss_pred CchhHHHHHHHHhccCcee------c----cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhH
Confidence 8899999999988764221 1 11123344445444556666666777777777776676665443333333
Q ss_pred H-----hcccchHHHH----HHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCC----cchHHHHHHHHHHHHhhCCc
Q 004394 269 R-----LQHANGAVVL----STIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGS----PEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 269 ~-----L~~~n~aVvl----eaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~----~nirYvaL~~l~~L~~~~p~ 335 (756)
. ++.++--++. .+++-+++..... ....++..+.|++.|..+. +....++++.|..++...|.
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~----g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~ 650 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQIAANY----GPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPS 650 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCC
Confidence 2 3334321333 3333333332221 1223567778888887655 77889999999999988764
Q ss_pred ccccccc------eeee-cCCCCHHHHHHHHHHHHHhcCC
Q 004394 336 IFASDYK------HFYC-QYNEPSYVKKLKLEMLTAVANE 368 (756)
Q Consensus 336 lf~~~~~------~f~c-~~~dp~~IK~~kLdIL~~L~n~ 368 (756)
-+.+-+- +.-| ...||...=...=|.|.++.+.
T Consensus 651 pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 651 PLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred CccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 3322110 1112 3455555555666666665443
No 205
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=51.88 E-value=5.8e+02 Score=32.52 Aligned_cols=104 Identities=12% Similarity=0.154 Sum_probs=64.9
Q ss_pred hHHHHHHhHhccCCCC--CC--ChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh---hhHHHHHHHHHhhhcCC
Q 004394 463 KAKAALIWMLGEYSQD--MQ--DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP---ETQKVLGAALAAGLADF 535 (756)
Q Consensus 463 ~ak~a~iWiLGEy~~~--i~--~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~---e~~~~l~~vL~~~~~d~ 535 (756)
+.+-.++-+|||-+.. ++ ..-..|+.++..|.--+ .++-+.+|..+.++++++|+ .|+.++..+... ..+.
T Consensus 520 etk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hn-IEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rk-K~a~ 597 (1128)
T KOG2051|consen 520 ETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHN-IEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRK-KRAS 597 (1128)
T ss_pred hhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhccccc-HHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHH-HHHh
Confidence 4455567889997653 22 13345677788888777 99999999999999999985 244444444322 2345
Q ss_pred ChHHHhHHHHHHHHhcCCHHHHHhhcCCCCCCC
Q 004394 536 HQDVHDRALFYHRLLQYNVSVAERVVNPPKQAV 568 (756)
Q Consensus 536 d~dVrdRA~~Y~rLL~~~~e~a~~vv~~~~p~i 568 (756)
..|-|+-...=..+....|....+++.-..||-
T Consensus 598 ~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~ 630 (1128)
T KOG2051|consen 598 ALDSRQATLIENAYYLCNPPERSKRLSKKRPPM 630 (1128)
T ss_pred hhchHHHHHHHHhHHhccChhhcccccccCCcH
Confidence 566666655544444444444444555455553
No 206
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=51.04 E-value=1.7e+02 Score=29.30 Aligned_cols=113 Identities=21% Similarity=0.307 Sum_probs=71.7
Q ss_pred HHHHHHHhhhcCCCC--CChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHH
Q 004394 24 DLKSQLRQLAGSRAP--GIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLT 101 (756)
Q Consensus 24 Elr~~L~~~~~~~~~--~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~ 101 (756)
|.|.+|++.. .++| +-.+.-|+.+.|-=++.... ....+-+++.+.-++...-+-.|-.+..-..-+|+-++
T Consensus 2 ~~~~~l~~i~-~~~pl~~L~~eek~llW~~R~~~~~~---p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aL-- 75 (171)
T cd00872 2 EEREQLEAII-ARDPLSELTEEDKELLWKLRHECRKK---PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQAL-- 75 (171)
T ss_pred hHHHHHHHHH-cCCCCCCCCHHHHHHHHHHHHHHhhC---cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHH--
Confidence 4455555432 2233 11234566666665555432 44467777777878877777777777777776776655
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCC
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKD 146 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d 146 (756)
.-|-.+. +++.||..|++.+.++.+.++..++..- .++|+.
T Consensus 76 -eLL~~~f--~d~~VR~yAV~~L~~~sd~eL~~yL~QL-VQaLKy 116 (171)
T cd00872 76 -ELLDCNF--PDEHVREFAVRCLEKLSDDELLQYLLQL-VQVLKY 116 (171)
T ss_pred -HHCCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHH-HHHHHc
Confidence 2333333 4599999999999999999988776554 444543
No 207
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=49.50 E-value=64 Score=29.42 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHHHhhHhhhcCChhhHHHHH------HHHHhhhcC-CChHHHhHHHHHHHHhcCCHHHHHhhcCC
Q 004394 502 RLHLLTAVMKCFFKRPPETQKVLG------AALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNP 563 (756)
Q Consensus 502 q~~lLtA~~Kl~~~~p~e~~~~l~------~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~e~a~~vv~~ 563 (756)
|..++..++-+..+++ +.|+.+. -+|+.|..| .||=+|++|.+-.|-|-.+.+..+++|..
T Consensus 3 K~~lvrlianl~~~~~-~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNK-EVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCH-HHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 5566666776766765 3555444 578888776 59999999999999888777777777753
No 208
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.14 E-value=3.9e+02 Score=29.37 Aligned_cols=259 Identities=15% Similarity=0.134 Sum_probs=0.0
Q ss_pred CccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCCh---hhhHHHH
Q 004394 60 DVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVEYL 136 (756)
Q Consensus 60 Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~---~ei~e~l 136 (756)
.++..+.+++..++++.. .+..|--.+..+...+ ...+.+-|++..+.+..-|||-|..|.. ...+..+
T Consensus 24 ~~~~~L~~~l~~ls~~~~-~~~~g~~l~~~iL~~~-------~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v 95 (330)
T PF11707_consen 24 LVSSVLALLLKKLSSDLS-FQSYGLELIRSILQNH-------LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREV 95 (330)
T ss_pred HHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHH-------HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHH
Q ss_pred HH-------HHHhhcCCCC-------------hHHHHHHHHHHHHHhhhcCCcc-----cCCCchHHHHHhHhcCCChhH
Q 004394 137 VG-------PLGLGLKDNN-------------SYVRTVAVIGVLKLYHISAPTC-----IDADFPPTLKHLMLNDPDPQV 191 (756)
Q Consensus 137 ~~-------~v~~~L~d~~-------------pyVRKkAalal~kl~~~~p~~~-----~~~~~i~~L~~lLL~D~d~~V 191 (756)
.. .+.+++.... +-||..++-=++.+....+..+ ...++...+-+- +.+.++.+
T Consensus 96 ~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~-l~~D~~~~ 174 (330)
T PF11707_consen 96 LRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKG-LRKDPPET 174 (330)
T ss_pred HHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhc-ccCCCHHH
Q ss_pred HHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc
Q 004394 192 VANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ 271 (756)
Q Consensus 192 v~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~ 271 (756)
+.-.+..|.+-.-.++..... .+..+++...+.+|.......++ ..+..-+...-+.+...-.
T Consensus 175 v~~iL~~l~~~Vl~~~~v~r~---~K~~~fn~~~L~~l~~Ly~~~~~--------------~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 175 VILILETLKDKVLKDSSVSRS---TKCKLFNEWTLSQLASLYSRDGE--------------DEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHHHHHHHhccCCCCChh---hhhhhcCHHHHHHHHHHhcccCC--------------cccchHHHHHHHHHHHHhc
Q ss_pred ccchHHHHHHHHHHHh---------hccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccc
Q 004394 272 HANGAVVLSTIKVFLH---------LTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK 342 (756)
Q Consensus 272 ~~n~aVvleaik~ii~---------l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~ 342 (756)
+...+|.+.--..+.. .......++ -..|.+||..-.|.---.-.+.+..|+..+|+++.++..
T Consensus 238 ~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~-------Nk~L~~ll~~lkp~e~~~q~~Lvl~Il~~~PeLva~Y~~ 310 (330)
T PF11707_consen 238 DPKHGVCFPDNGWYPRESDSGVPVTINNKSFKIN-------NKLLLNLLKKLKPWEDDRQQELVLKILKACPELVAPYFN 310 (330)
T ss_pred CCCcccccCCCCcCcCcccccccccccCCCCCcc-------cHHHHHHHHHCCCCccHHHHHHHHHHHHHChHHHHHHHH
Q ss_pred ee-eecCCCC
Q 004394 343 HF-YCQYNEP 351 (756)
Q Consensus 343 ~f-~c~~~dp 351 (756)
.+ +-...||
T Consensus 311 ~~~~~~~~dP 320 (330)
T PF11707_consen 311 NLPYSLEHDP 320 (330)
T ss_pred hhhhhCCCCC
No 209
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=48.80 E-value=1.5e+02 Score=31.91 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=51.2
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc----cCCCch----HHHHHhHhc--------CCChhHH
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC----IDADFP----PTLKHLMLN--------DPDPQVV 192 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~----~~~~~i----~~L~~lLL~--------D~d~~Vv 192 (756)
..+...-++|++..++.|.++.+|..++.++.++....|... .+.++. +.+..+ +. +....++
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~-L~~LP~~tp~~~s~~Ll 191 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPC-LYYLPPITPEDESLELL 191 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHH-hhcCCCCCCchhhHHHH
Confidence 345667889999999999999999999999999998766543 233333 333333 23 4555556
Q ss_pred HHHHHHHHHHHh
Q 004394 193 ANCLSALQEIWS 204 (756)
Q Consensus 193 ~~Al~aL~eI~~ 204 (756)
..|..++..+.+
T Consensus 192 ~~ay~~L~~L~~ 203 (282)
T PF10521_consen 192 QAAYPALLSLLK 203 (282)
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 210
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=48.38 E-value=1.2e+02 Score=30.67 Aligned_cols=72 Identities=25% Similarity=0.312 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhh-cCCccc--CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 135 YLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHI-SAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 135 ~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~-~p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
.+.+-...+|... +|| |=-|..++..+... .++.+. -+.++.-+++. |+.+|+.|+.+++.+|..+....+.
T Consensus 38 ~~Lpif~dGL~Et~~Py-~flA~~g~~dll~~~~~~kilPvlPqLI~plk~A-L~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPY-RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRA-LNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred hHHHHHHhhhhccCccH-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 4455555555543 454 45566666666665 444331 25566678887 6899999999999999988654443
No 211
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=48.17 E-value=3.6e+02 Score=32.77 Aligned_cols=196 Identities=16% Similarity=0.164 Sum_probs=111.2
Q ss_pred cCCChhhHHHHHHHHHHccccCChHHH--HHHHHHHHHcCC------CChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc
Q 004394 73 ATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKD------EDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (756)
Q Consensus 73 ~s~d~~~KkL~YLyl~~~~~~~~el~l--L~iNtl~KDL~s------~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L 144 (756)
...|-.+|---|=.+......-|.-.+ =+-.++...+.+ .+|.+--.| -+....+....+.+.|+..+
T Consensus 283 ~~kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~~vp~~LP~v~~i~----~~~s~~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 283 PQKDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTKMVPIVLPLVLLIA----EGLSQNEFGPKMLPALKPIY 358 (700)
T ss_pred cccCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhccccccccccchhhhhh----hccchhhhhhhhhHHHHHHh
Confidence 345666666666667777666665322 123444444433 234443333 34444555555555566555
Q ss_pred CCCChHHHHHHHHHHHH----Hhhh-cCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHh
Q 004394 145 KDNNSYVRTVAVIGVLK----LYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREA 219 (756)
Q Consensus 145 ~d~~pyVRKkAalal~k----l~~~-~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ 219 (756)
+-+++ |.+.+|+++ +.++ .++.+ .+...+.|+.. ++|.+..+.-.++..+....+.-...
T Consensus 359 ~~~~~---~~~~l~i~e~mdlL~~Kt~~e~~-~~~IlplL~~S-~~~~~~~iQ~~~L~~lptv~e~iD~~---------- 423 (700)
T KOG2137|consen 359 SASDP---KQALLFILENMDLLKEKTPPEEV-KEKILPLLYRS-LEDSDVQIQELALQILPTVAESIDVP---------- 423 (700)
T ss_pred ccCCc---ccchhhHHhhHHHHHhhCChHHH-HHHHHHHHHHH-hcCcchhhHHHHHHhhhHHHHhccHH----------
Confidence 43222 234444433 3333 44444 36778888888 68889888888887776666632110
Q ss_pred hccHHHHHHHHH-HhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhc---ccchHHHHHHHHHHHhhc
Q 004394 220 LISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQ---HANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 220 ll~~~~~~~Ll~-~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~---~~n~aVvleaik~ii~l~ 289 (756)
.+.+.++.++-+ .++..+.-.++.+|-++..+. +.-+...+++.+.++++ ...+++++.+++++-.+.
T Consensus 424 ~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~--q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~ 495 (700)
T KOG2137|consen 424 FVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI--QRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALA 495 (700)
T ss_pred HHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 111122222222 345566777888888888776 33345556666666554 567899999999876543
No 212
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=48.00 E-value=25 Score=25.79 Aligned_cols=31 Identities=35% Similarity=0.472 Sum_probs=27.1
Q ss_pred CCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 172 ~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
+.+.++.|.++ +++.|+.|+.+|+.+|..|+
T Consensus 10 ~~g~i~~Lv~l-l~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 10 EAGGIPPLVQL-LKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HTTHHHHHHHH-TTSSSHHHHHHHHHHHHHHH
T ss_pred HcccHHHHHHH-HcCCCHHHHHHHHHHHHHHh
Confidence 46788999997 68999999999999998874
No 213
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=47.91 E-value=1.1e+02 Score=29.38 Aligned_cols=51 Identities=12% Similarity=0.062 Sum_probs=35.4
Q ss_pred HHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 155 Aalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
+.+.+.-+....|+.. .+.+..|++. ++.+||.|+.-|+.+|..+.++.+.
T Consensus 21 ~ileicD~In~~~~~~--k~a~rai~kr-l~~~n~~v~l~AL~LLe~~vkNCG~ 71 (139)
T cd03567 21 AIQAFCEQINKEPEGP--QLAVRLLAHK-IQSPQEKEALQALTVLEACMKNCGE 71 (139)
T ss_pred HHHHHHHHHHcCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 4444555555555433 3456667777 5899999999999999999876554
No 214
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=47.44 E-value=2.1e+02 Score=27.59 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=59.0
Q ss_pred CChhHHHH-HHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccc-cchhHHHHHH-HHHHHHHHhhc
Q 004394 236 FSEWAQCL-VLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDVHQQVYE-RIKAPLLTLVS 312 (756)
Q Consensus 236 ~~~W~Qi~-IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~-~~~~~~~~l~-rl~~~L~~LLs 312 (756)
-.+|..+. |-+.+.. ++....+.+..|..+|+|.|+-|.+-|..++-.+..+ ...++.++.. +..+-|.++++
T Consensus 15 ~~dw~~il~icD~I~~----~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~ 90 (144)
T cd03568 15 SENWGLILDVCDKVKS----DENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLIN 90 (144)
T ss_pred CcCHHHHHHHHHHHhc----CCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhc
Confidence 35676433 5555543 3455677888999999999999999999887655432 2334444432 34445666666
Q ss_pred C-CCcchHHHHHHHHHHHHhh
Q 004394 313 S-GSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 313 s-~~~nirYvaL~~l~~L~~~ 332 (756)
. .+++++--+|..|......
T Consensus 91 ~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 91 DRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 5 5667777666666665544
No 215
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=46.29 E-value=4.9e+02 Score=29.54 Aligned_cols=41 Identities=5% Similarity=0.036 Sum_probs=35.2
Q ss_pred eeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 004394 343 HFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAA 383 (756)
Q Consensus 343 ~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~ 383 (756)
+|.|..|+|..||+.++.=|-..|..++...|.++|...+.
T Consensus 66 ~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 66 QLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLN 106 (460)
T ss_pred hhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHH
Confidence 46788899999999999999999999998888877776654
No 216
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=46.12 E-value=2.5e+02 Score=26.05 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHhhh-cCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 149 SYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 149 pyVRKkAalal~kl~~~-~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
++||.+.+.++..+... +|+.- +++++.+..++ .. ++.-.-..+.+|..+.
T Consensus 2 ~~i~~kl~~~l~~i~~~~~P~~W--p~~l~~l~~~~-~~-~~~~~~~~L~iL~~l~ 53 (148)
T PF08389_consen 2 PFIRNKLAQVLAEIAKRDWPQQW--PDFLEDLLQLL-QS-SPQHLELVLRILRILP 53 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHHH-HT-THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHChhhC--chHHHHHHHHh-cc-chhHHHHHHHHHHHHH
Confidence 68999999999999976 48876 77888887763 44 4555555666665553
No 217
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=45.91 E-value=1.5e+02 Score=28.58 Aligned_cols=81 Identities=11% Similarity=-0.024 Sum_probs=53.9
Q ss_pred HHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Ch----hhhH-HHHHHHHHhhcCC------CChHHH
Q 004394 87 VGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANLV-EYLVGPLGLGLKD------NNSYVR 152 (756)
Q Consensus 87 l~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~----~ei~-e~l~~~v~~~L~d------~~pyVR 152 (756)
++-..+.+++.+--++-.++|-++++||.+.-+||..+-.+ +. .+++ ..+...+.+++.. .++-||
T Consensus 25 icD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk 104 (139)
T cd03567 25 FCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVK 104 (139)
T ss_pred HHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHH
Confidence 44444556777778999999999999999998888766443 11 2233 4444566666643 568899
Q ss_pred HHHHHHHHHHhhhcC
Q 004394 153 TVAVIGVLKLYHISA 167 (756)
Q Consensus 153 KkAalal~kl~~~~p 167 (756)
++.+..+..-....+
T Consensus 105 ~kil~li~~W~~~f~ 119 (139)
T cd03567 105 TKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHHHHHHhc
Confidence 988776655444333
No 218
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=45.76 E-value=3.7e+02 Score=30.94 Aligned_cols=154 Identities=16% Similarity=0.120 Sum_probs=94.6
Q ss_pred HHHHHHhcCCCc-------cchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHc---------CCCC
Q 004394 50 KVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDC---------KDED 113 (756)
Q Consensus 50 KlI~~~~lG~Dv-------s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL---------~s~N 113 (756)
.++.....|.|- ..+|-.+...+.|+|...--+|-|++.++++.+..-.-++-|.+.+-| -|.|
T Consensus 295 el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgn 374 (604)
T KOG4500|consen 295 ELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGN 374 (604)
T ss_pred hHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344555567542 224455667899999999999999999999987665446555444332 2456
Q ss_pred hHHHHHHHHHHhcCChhh-----hHHH-HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC-----cccCCCchHHHHHh
Q 004394 114 PMIRGLALRSLCSLRVAN-----LVEY-LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP-----TCIDADFPPTLKHL 182 (756)
Q Consensus 114 p~iR~LALrtLs~I~~~e-----i~e~-l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~-----~~~~~~~i~~L~~l 182 (756)
-..+-.++.++-++..|. +++. +...|..-+.-..|-|--+- ++-+|+.+...+ ...+++.+++|.+.
T Consensus 375 V~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkl-lgTlrM~~d~qe~~a~eL~kn~~l~ekLv~W 453 (604)
T KOG4500|consen 375 VERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKL-LGTLRMIRDSQEYIACELAKNPELFEKLVDW 453 (604)
T ss_pred chhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHH-HHHHHHHHhchHHHHHHHhcCHHHHHHHHHh
Confidence 666666666666654443 2222 34455555655555555443 444555554433 22345566777776
Q ss_pred HhcCCCh-hHHHHHHHHHHHHHhh
Q 004394 183 MLNDPDP-QVVANCLSALQEIWSL 205 (756)
Q Consensus 183 LL~D~d~-~Vv~~Al~aL~eI~~~ 205 (756)
-..+|. +|.+-...++.-+.++
T Consensus 454 -sks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 454 -SKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred -hhCCccchhhhhhhHHHHHHHHh
Confidence 456664 4888888887777664
No 219
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.97 E-value=1.4e+02 Score=37.32 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHh---hhcCCcc---cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY---HISAPTC---IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 131 ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~---~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
+|+..+....++.|+|++-.+|=+|..++.-.. ..+++.+ ....|...+..+ .+.||.++.-|+..+..++.
T Consensus 799 ~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~--~~k~~L~v~~a~~~i~~m~~ 876 (1014)
T KOG4524|consen 799 KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECL--LCKDPLIVQRAFSCIEQMGK 876 (1014)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHH--hcCchHHHHHHHHHHHHHHH
Confidence 478888888999999999999999998875433 3455543 135677766653 68899999999999999987
Q ss_pred hcc
Q 004394 205 LEA 207 (756)
Q Consensus 205 ~~~ 207 (756)
..+
T Consensus 877 ~sg 879 (1014)
T KOG4524|consen 877 YSG 879 (1014)
T ss_pred Hhh
Confidence 654
No 220
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=44.62 E-value=1.4e+02 Score=28.42 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh
Q 004394 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (756)
Q Consensus 154 kAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l 233 (756)
.+++-+.-+.+..++.. .+.+..|++. +..+||.|+..|+.+|..+.++.+..++.. .-.+..+..|...+
T Consensus 24 ~~~l~icD~i~~~~~~~--kea~~~l~kr-l~~~~~~vq~~aL~lld~lvkNcg~~f~~e------v~~~~fl~~l~~l~ 94 (140)
T PF00790_consen 24 SLILEICDLINSSPDGA--KEAARALRKR-LKHGNPNVQLLALTLLDALVKNCGPRFHRE------VASKEFLDELVKLI 94 (140)
T ss_dssp HHHHHHHHHHHTSTTHH--HHHHHHHHHH-HTTSSHHHHHHHHHHHHHHHHHSHHHHHHH------HTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHcCCHHHHHH------HhHHHHHHHHHHHH
Confidence 45555555555555444 3456677777 578999999999999998887654322111 11222333333333
Q ss_pred cc--CChh--HHHHHHHHHHhh
Q 004394 234 KE--FSEW--AQCLVLELVAKY 251 (756)
Q Consensus 234 ~~--~~~W--~Qi~IL~lL~~y 251 (756)
.. ..++ .+-++++++..+
T Consensus 95 ~~~~~~~~~~Vk~k~l~ll~~W 116 (140)
T PF00790_consen 95 KSKKTDPETPVKEKILELLQEW 116 (140)
T ss_dssp HHTTTHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCchhHHHHHHHHHHHHH
Confidence 22 3344 666777766554
No 221
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=44.56 E-value=83 Score=30.72 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHH
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPV 225 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~ 225 (756)
...+.||-.|.+++.|+....++... +.+.+.+..+ +.+.+..-...++.++..+.+--|+ .|.. .+.+...
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~-~~~~~~i~~~-~~~~~~d~~i~~~~~l~~lfp~~~d----v~~~--l~~~eg~ 87 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFK-EKISDFIESL-LDEGEMDSLIIAFSALTALFPGPPD----VGSE--LFLSEGF 87 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HCCHHCCHHHHHHHHHHHHCTTTHH----HHHH--HCCTTTH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH-HccccchhHHHHHHHHHHHhCCCHH----HHHH--HHhhhhH
Confidence 46778999999999999877666541 2234445554 4554444566677777777553332 2221 1233334
Q ss_pred HHHHHHHhc--cCChhHHHHHHHHHHhhCCCChhH---HHHHHHHHHHHhcc
Q 004394 226 IYYLLNRIK--EFSEWAQCLVLELVAKYVPLDSNE---IFDIMNLLEDRLQH 272 (756)
Q Consensus 226 ~~~Ll~~l~--~~~~W~Qi~IL~lL~~y~p~d~~e---~~~il~~l~~~L~~ 272 (756)
...++.... ..++=.|..++++|..-+-....- ....++.+...+++
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 88 LESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKN 139 (157)
T ss_dssp HHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTT
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcc
Confidence 455555555 456777888888887655322111 23345556666643
No 222
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.16 E-value=1.7e+02 Score=37.18 Aligned_cols=109 Identities=22% Similarity=0.243 Sum_probs=74.9
Q ss_pred CChHHHHHHHHHHHHc-----CCCChHHHHHHHHHHhcC--Chhh--hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 004394 94 NPDLALLTINFLQRDC-----KDEDPMIRGLALRSLCSL--RVAN--LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (756)
Q Consensus 94 ~~el~lL~iNtl~KDL-----~s~Np~iR~LALrtLs~I--~~~e--i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~ 164 (756)
+.|..--++|.+-+-+ .|-.|.||+..+..||.= ..|+ +-......+.=.|+|.+.-||++.+-++.++|.
T Consensus 276 ~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e 355 (1048)
T KOG2011|consen 276 QQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYE 355 (1048)
T ss_pred HHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHh
Confidence 3343344566666554 688999999999999862 2233 234556667778999999999999999999998
Q ss_pred hcCCccc----CCCchHHHHHhHhcCCChhHHHHHHHHHHHH
Q 004394 165 ISAPTCI----DADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 165 ~~p~~~~----~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
.+...-. -..|.+++.++...|.|.+|.+.++..+...
T Consensus 356 ~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~ 397 (1048)
T KOG2011|consen 356 KDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLL 397 (1048)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHH
Confidence 8433211 1234556666533678888888877766554
No 223
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=43.81 E-value=99 Score=37.02 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHH
Q 004394 114 PMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVA 193 (756)
Q Consensus 114 p~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~ 193 (756)
+-+-|.|+-+||.=... +.....+...+.-.+|.+||..-+|+.=++-.+|+. +..+.|.+. .+|.|..|..
T Consensus 622 ~avLgiAliAMgeeig~---eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~----~vlDtLsk~-shd~D~eva~ 693 (878)
T KOG2005|consen 622 LAVLGIALIAMGEEIGS---EMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQV----NVLDTLSKF-SHDGDLEVAM 693 (878)
T ss_pred chhhhhhhhhhhhhhhh---HHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcc----hHHHHHHHh-ccCcchHHHH
Confidence 55678888888753333 445556677778889999999999999999999985 468899887 7999999999
Q ss_pred HHHHHHHHHHh
Q 004394 194 NCLSALQEIWS 204 (756)
Q Consensus 194 ~Al~aL~eI~~ 204 (756)
||+.++.-|..
T Consensus 694 naIfamGLiGA 704 (878)
T KOG2005|consen 694 NAIFAMGLIGA 704 (878)
T ss_pred HHHHHhccccC
Confidence 99999987753
No 224
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=43.50 E-value=31 Score=34.78 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHh
Q 004394 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (756)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~l 182 (756)
+++.++.+++++|+..++-|.+++.-++.++...++-.- +.+.+.++.+
T Consensus 77 vlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG--~aLvPyyrqL 125 (183)
T PF10274_consen 77 VLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG--EALVPYYRQL 125 (183)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHH
Confidence 567788888888888888888888888888765554433 4455555554
No 225
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=42.98 E-value=2.3e+02 Score=27.71 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 298 ~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
..+.++.+.++..+.+.++..+=..+..+..|+.
T Consensus 124 ~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 124 PYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3467788888888876666777777777776653
No 226
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=42.96 E-value=38 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
++.-+..+...+.+-|+|++|+|+.||.-.+-.+.+..++.+
T Consensus 32 s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f 73 (122)
T cd03572 32 SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF 73 (122)
T ss_pred CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH
Confidence 445567788888888999999999999999998888765443
No 227
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=42.95 E-value=1.6e+02 Score=28.95 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=47.0
Q ss_pred hHhccCCCCCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhHHH
Q 004394 470 WMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (756)
Q Consensus 470 WiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~ 544 (756)
|++-.+...+.+...-++.+.+.+..-+ ..+-..++.|+.=+. +.....++-+--+|..+..+.+.+.|.=|.
T Consensus 81 ~lv~~~p~~vle~~~~l~~~ld~l~~lp-~~~a~~ll~Al~PLi-~~s~~lrd~lilvLRKamf~r~~~~R~~Av 153 (158)
T PF14676_consen 81 ELVRKAPLTVLECSSKLKELLDYLSFLP-GDVAIGLLRALLPLI-KFSPSLRDSLILVLRKAMFSRELDARQMAV 153 (158)
T ss_dssp HHHHH-HHHHS-S-HHHHGGGGGTTTS--HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTT-SSHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 3333333333334445556666666666 778788888888776 444568888889999999999999887764
No 228
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=42.26 E-value=39 Score=22.73 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCChhhhHHHHHHHH
Q 004394 116 IRGLALRSLCSLRVANLVEYLVGPL 140 (756)
Q Consensus 116 iR~LALrtLs~I~~~ei~e~l~~~v 140 (756)
||.-|.++|+.|+.++-++.+...+
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L 25 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEAL 25 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6889999999999988777665544
No 229
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=41.23 E-value=1e+02 Score=37.11 Aligned_cols=104 Identities=22% Similarity=0.196 Sum_probs=83.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhc----CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cCCcccCCC
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCS----LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDAD 174 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~----I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p~~~~~~~ 174 (756)
-++-.+.|=+..++-.+|.+=|+-+-. +..+.+-+.++|.+..++.|.++-+|-.++-++.-+..+ ++. ....+
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~-~Ln~E 408 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR-NLNGE 408 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh-hhcHH
Confidence 456778888889999999998887655 444567788999999999999999999999999888754 444 33456
Q ss_pred chHHHHHhHhcCCChhHHHHHHHHHHHHHhh
Q 004394 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
....+.++ -.|.+++...|....|.+|...
T Consensus 409 llr~~ar~-q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 409 LLRYLARL-QPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred HHHHHHhh-CccccCcccccceeeecccccc
Confidence 67778776 6799999999999888888653
No 230
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=40.69 E-value=1e+02 Score=34.53 Aligned_cols=78 Identities=15% Similarity=0.026 Sum_probs=57.7
Q ss_pred HHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC-------hhhh-HHHHHHHHHhhcC-CCChHHH
Q 004394 82 MCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANL-VEYLVGPLGLGLK-DNNSYVR 152 (756)
Q Consensus 82 L~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~-------~~ei-~e~l~~~v~~~L~-d~~pyVR 152 (756)
=+-|-++-...+++|..--++-.+.|-+++.||+|.-+||.-+..+. ..|+ .......+++++. ..+|-|+
T Consensus 27 ~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~ 106 (462)
T KOG2199|consen 27 SLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVC 106 (462)
T ss_pred HHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHH
Confidence 34455666677888998999999999999999999999998887641 1233 3566777888887 4578888
Q ss_pred HHHHHHH
Q 004394 153 TVAVIGV 159 (756)
Q Consensus 153 KkAalal 159 (756)
++-..-+
T Consensus 107 ~k~~~lv 113 (462)
T KOG2199|consen 107 EKMRDLV 113 (462)
T ss_pred HHHHHHH
Confidence 7754443
No 231
>PF13981 SopA: SopA-like central domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=39.53 E-value=1.6e+02 Score=28.30 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhHhhhcCChhh---HHHHHHHHHhhhcCCChHHHhHHHHHHHHh
Q 004394 499 AEVRLHLLTAVMKCFFKRPPET---QKVLGAALAAGLADFHQDVHDRALFYHRLL 550 (756)
Q Consensus 499 ~~Vq~~lLtA~~Kl~~~~p~e~---~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL 550 (756)
......+|..+.+.|.++|+-+ ...+-+++..|.+..++++++.|...|.--
T Consensus 67 ~~~~~~~l~~~i~~F~r~pelm~~~N~~FIQ~i~~~~~~~~~~~k~~A~~LY~~Y 121 (135)
T PF13981_consen 67 DKLNQAILNFFIDRFSRQPELMISNNGAFIQLIAQAMTHGDDEIKQKARDLYKKY 121 (135)
T ss_dssp HHHHHHCHHHHHHHHHHTTTHHHHTHHHHHHHHHHHCC-TSCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhCHhHHHHcccHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4456689999999999999644 335556677777777999999998866543
No 232
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=39.50 E-value=2.4e+02 Score=27.95 Aligned_cols=95 Identities=23% Similarity=0.249 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHH
Q 004394 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (756)
Q Consensus 42 ~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LAL 121 (756)
..-++.+.|-=++... . ...++.+++.+.=++....+=.|-.+..-..-+++-++ .-|-... +|+.||..|+
T Consensus 28 ~~ek~llW~~R~~l~~-~--p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~aL---eLL~~~f--~~~~VR~yAV 99 (166)
T cd00870 28 DEEKDLIWKFRFYLTN-N--KKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDAL---ELLSPYF--TNPVVRKYAV 99 (166)
T ss_pred HHHHHHHHHhHHHHhh-C--cHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHHH---HHcCccC--CCHHHHHHHH
Confidence 3445566664444332 2 33456666666656666666667667666666666554 2222222 3699999999
Q ss_pred HHHhcCChhhhHHHHHHHHHhhcC
Q 004394 122 RSLCSLRVANLVEYLVGPLGLGLK 145 (756)
Q Consensus 122 rtLs~I~~~ei~e~l~~~v~~~L~ 145 (756)
+.|......++..++..- .++|+
T Consensus 100 ~~L~~~sd~eL~~yL~QL-VQaLK 122 (166)
T cd00870 100 SRLKLASDEELLLYLLQL-VQALK 122 (166)
T ss_pred HHHHhCCHHHHHHHHHHH-HHHHH
Confidence 999999988887776554 44454
No 233
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=39.42 E-value=1.5e+02 Score=33.35 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=64.0
Q ss_pred HHHHHHHHH-HhhhcCCcccCCCchHHHHHhHhc------CCChhHHHHHHHHHHHHHhhcccchh---H--HHHHHHhh
Q 004394 153 TVAVIGVLK-LYHISAPTCIDADFPPTLKHLMLN------DPDPQVVANCLSALQEIWSLEASTSE---E--ASREREAL 220 (756)
Q Consensus 153 KkAalal~k-l~~~~p~~~~~~~~i~~L~~lLL~------D~d~~Vv~~Al~aL~eI~~~~~~~~~---~--~~~~~~~l 220 (756)
|.||.-++| +.+..++.+. +-+...+..+ +. ..|..-.=.|+.++..++.+..+... . ...+....
T Consensus 228 R~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~-l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~F 305 (370)
T PF08506_consen 228 RRAACDFLRSLCKKFEKQVT-SILMQYIQQL-LQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDF 305 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHH
T ss_pred HHHHHHHHHHHHHHHhHHHH-HHHHHHHHHH-HHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHH
Confidence 346666554 5555554431 1122344444 33 34556666788888888654421000 0 00011111
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC-ChhHHHHHHHHHHHHhcccchHHHHHH
Q 004394 221 ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLST 281 (756)
Q Consensus 221 l~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~-d~~e~~~il~~l~~~L~~~n~aVvlea 281 (756)
+...++..|- .-....||++...++++..|... +.+....++..+...|++.+..|---|
T Consensus 306 f~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyA 366 (370)
T PF08506_consen 306 FSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYA 366 (370)
T ss_dssp HHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred HHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhh
Confidence 2221122222 11246899999999999988543 445667788888889988877664333
No 234
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=39.41 E-value=5.7e+02 Score=28.35 Aligned_cols=153 Identities=16% Similarity=0.298 Sum_probs=81.5
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhH
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e 258 (756)
+-+. ...++-.|.+.|+..+.++.... ++.+...+. ..
T Consensus 169 ff~~-~~~~~Fdiasdaf~t~~~llt~h----------------k~~~a~fl~-------------------------~n 206 (335)
T PF08569_consen 169 FFKY-VQLPNFDIASDAFSTFKELLTRH----------------KKLVAEFLS-------------------------NN 206 (335)
T ss_dssp HHHH-TTSSSHHHHHHHHHHHHHHHHSS----------------HHHHHHHHH-------------------------HT
T ss_pred HHHH-hcCCccHhHHHHHHHHHHHHhcc----------------HHHHHHHHH-------------------------HH
Confidence 4444 47788999999999999986532 222222221 01
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHH------HHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 259 IFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIK------APLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 259 ~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~------~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
-..+......+|++.|..+-..++|++..+-...+.. .++.|-+ ..+..+|++++.++||-|...+...+..
T Consensus 207 ~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~--~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 207 YDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNF--NVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGH--HHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHH--HHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 1234455566777778777778888776653221111 1111110 1345688889999999998777655543
Q ss_pred CCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhC--CHHHHHH---HHHHHHH
Q 004394 333 APFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARE---SIRAVGK 399 (756)
Q Consensus 333 ~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~--D~~~~~~---~I~aIg~ 399 (756)
| +.|.-|+ +||.. |=+.++.=|..+..+. |.+|..| +|+.|..
T Consensus 285 -p--------------~K~~~I~----~iL~~-----Nr~kLl~fl~~f~~~~~~D~qf~~EK~~li~~i~~ 332 (335)
T PF08569_consen 285 -P--------------NKPPPIV----DILIK-----NREKLLRFLKDFHTDRTDDEQFEDEKAYLIKQIES 332 (335)
T ss_dssp -S--------------S-BHHHH----HHHHH-----THHHHHHHHHTTTTT--S-CHHHHHHHHHHHHHHT
T ss_pred -C--------------CCChHHH----HHHHH-----HHHHHHHHHHhCCCCCCccccHHHHHHHHHHHHHh
Confidence 2 3443332 23332 5455555555555554 6667655 5555543
No 235
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=38.87 E-value=6.6e+02 Score=35.22 Aligned_cols=285 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHcCCCChHHHHHHHHHHhcCChh--hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC--------c--ccC
Q 004394 105 LQRDCKDEDPMIRGLALRSLCSLRVA--NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--------T--CID 172 (756)
Q Consensus 105 l~KDL~s~Np~iR~LALrtLs~I~~~--ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~--------~--~~~ 172 (756)
+..+....|.. --+|.++++++... ...+.+-..+...+...++-+||.|++++..+++..+. . +
T Consensus 450 ~~~~~~~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v-- 526 (2341)
T KOG0891|consen 450 ILQKTGDSTDD-IQLAFKTLGGFKFSGYSLTLFVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVV-- 526 (2341)
T ss_pred hhhhcccccHH-HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHH--
Q ss_pred CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC
Q 004394 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (756)
Q Consensus 173 ~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~ 252 (756)
......+..+-+.|.||.++...+.-+. ...++ .+-.+..++.++.++.+..=-.|......+.+.+
T Consensus 527 ~~vl~~ll~~aia~~~~~i~~~v~~~l~--~~~~~-----------~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~ 593 (2341)
T KOG0891|consen 527 KEVLSALLTVAIADTDPDIRIRVLSSLN--ERFDA-----------QLAQPDLLRLLFIALHDENFAIQELATVIIGRLS 593 (2341)
T ss_pred HHHHHHHHHHhccCCCcchhhhHHhhhc--cchhh-----------hhcCchhHHHHHHHhhhhhhhhHHhHHhhccccc
Q ss_pred C-----CChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHH
Q 004394 253 P-----LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLH 327 (756)
Q Consensus 253 p-----~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~ 327 (756)
- .-+.-....+....++..+...-+-.++.+-..++....+.......+.+-..+...+...++-+.-.++..+.
T Consensus 594 ~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~ 673 (2341)
T KOG0891|consen 594 SYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIG 673 (2341)
T ss_pred cccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHH
Q ss_pred HHHhhCCcccccccceeeecCCCCHH------HHHHHHHHHHHhcCCCCHH--------HHHHHHHHHhhhC-CHHHHHH
Q 004394 328 ILVMRAPFIFASDYKHFYCQYNEPSY------VKKLKLEMLTAVANESNTY--------EIVTELCEYAANV-DIPIARE 392 (756)
Q Consensus 328 ~L~~~~p~lf~~~~~~f~c~~~dp~~------IK~~kLdIL~~L~n~~Nv~--------~Iv~EL~~Yl~~~-D~~~~~~ 392 (756)
.|++..........+.++|...+... .|+-.+-.+-.++...-+- .+++-|...+... ...++++
T Consensus 674 eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~ 753 (2341)
T KOG0891|consen 674 ELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESSTGYVVDPYLDYPELLDILINILKTEQSSTIRRE 753 (2341)
T ss_pred HHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcccceEecccccChHHHHHHHHHHhHhhhhHHHHH
Q ss_pred HHHHHHHHHhhcC
Q 004394 393 SIRAVGKIALQQY 405 (756)
Q Consensus 393 ~I~aIg~lA~k~~ 405 (756)
+++.+|.++...|
T Consensus 754 ~v~~~g~~g~~d~ 766 (2341)
T KOG0891|consen 754 AIRLLGLLGALDP 766 (2341)
T ss_pred HHHHhhhhcccch
No 236
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=38.17 E-value=2.3e+02 Score=26.67 Aligned_cols=77 Identities=14% Similarity=0.147 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc-chhHHHHHH-HHHHHHHHhhcC---CCcchHHHHHHHHHHHH
Q 004394 256 SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYE-RIKAPLLTLVSS---GSPEQSYAVLSHLHILV 330 (756)
Q Consensus 256 ~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~-~~~~~~~l~-rl~~~L~~LLss---~~~nirYvaL~~l~~L~ 330 (756)
+....+.+..|..+|++.|+.|.+-|+.++-.+..+- ..++.++-. +.-.-|.+++.. .++++|--+|+.+....
T Consensus 32 ~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 32 PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455677888999999999999999988775554322 224433332 222235566643 35566666666665555
Q ss_pred hh
Q 004394 331 MR 332 (756)
Q Consensus 331 ~~ 332 (756)
..
T Consensus 112 ~~ 113 (133)
T cd03561 112 ES 113 (133)
T ss_pred HH
Confidence 44
No 237
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=37.28 E-value=47 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.042 Sum_probs=21.1
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHH
Q 004394 136 LVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (756)
Q Consensus 136 l~~~v~~~L~d~~pyVRKkAalal~kl 162 (756)
.++.+.+++.++++.+++.|+.++..+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456677777788899999998888765
No 238
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=37.13 E-value=1.7e+02 Score=26.20 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=43.2
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHhhhcCchhhHHHHHHHHHHHh
Q 004394 380 EYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (756)
Q Consensus 380 ~Yl~~~D~~~~~~~I~aIg~lA~k~~~-----~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~ 438 (756)
+|+...+ +=+.+++...-..+.+.++ ..+|+.++-+++..+.+|+..| +.++..|+.
T Consensus 12 ~f~~~~~-~~~~~i~~~~~~~~~~l~~~~~~~a~~Yvkvm~Ki~~~g~~fv~~E-~~RL~~lL~ 73 (95)
T PF07749_consen 12 EFVAASD-DEREEILEEAKAAAEKLEDSAAKYAKYYVKVMEKIIEKGEEFVAKE-IARLERLLE 73 (95)
T ss_dssp HHHHS-C-HHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHHHHSGTHHHHHH-HHHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHHccchHHHHH-HHHHHHHHh
Confidence 5655555 6667788887777777654 3579999999999999999999 577888887
No 239
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=36.73 E-value=7e+02 Score=28.57 Aligned_cols=359 Identities=14% Similarity=0.125 Sum_probs=173.5
Q ss_pred CCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChh
Q 004394 111 DEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (756)
Q Consensus 111 s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~ 190 (756)
..|+.....-+.-|+.+..++.++++..-+-..|+.....++ +.+.|...+. +..|..-+ .+ +.+.|..
T Consensus 61 ~~~~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~------lf~~~a~~~k---~~~~~~fl-~l-l~r~d~~ 129 (442)
T KOG2759|consen 61 ANNAQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVD------LFHDYAHKLK---RTEWLSFL-NL-LNRQDTF 129 (442)
T ss_pred cccHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHH------HHHHHHHhhh---ccchHHHH-HH-HhcCChH
Confidence 345666667777788888888888888887777765443332 2233333222 23355555 44 5777877
Q ss_pred HHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhcc-CChhHHHHHHHHHHhhCCCChh-HHH---HHHHH
Q 004394 191 VVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSN-EIF---DIMNL 265 (756)
Q Consensus 191 Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~-~~~W~Qi~IL~lL~~y~p~d~~-e~~---~il~~ 265 (756)
.+.-+...+..+....+... ......+ ....|-+.+.. .++=......++|..+...++- .++ +-...
T Consensus 130 iv~~~~~Ils~la~~g~~~~----~~~e~~~---~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~ 202 (442)
T KOG2759|consen 130 IVEMSFRILSKLACFGNCKM----ELSELDV---YKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSL 202 (442)
T ss_pred HHHHHHHHHHHHHHhccccc----cchHHHH---HHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchh
Confidence 66634444444433221100 0000001 11222223333 2333344455566665544321 111 11233
Q ss_pred HHHHhc--ccchHHHHHHHHHHHhhccccchhHHHHHH--HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccc
Q 004394 266 LEDRLQ--HANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDY 341 (756)
Q Consensus 266 l~~~L~--~~n~aVvleaik~ii~l~~~~~~~~~~~l~--rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~ 341 (756)
+...+. +.|-=+.|+.+-|+..++-+ +... +.+. .+.+.|...+..+ +|-=+.|.+..+...
T Consensus 203 l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~a-e~~~~~~li~~L~~Ivk~~---~KEKV~Rivlai~~N--------- 268 (442)
T KOG2759|consen 203 LIRILASTKCGFQLQYQSIFCIWLLTFN-PHAA-EKLKRFDLIQDLSDIVKES---TKEKVTRIVLAIFRN--------- 268 (442)
T ss_pred hHHHHhccCcchhHHHHHHHHHHHhhcC-HHHH-HHHhhccHHHHHHHHHHHH---HHHHHHHHHHHHHHH---------
Confidence 334442 23456788888888777632 2221 1111 1223344444321 222222222222111
Q ss_pred ceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhh---cCChhHHHH-HHHHH
Q 004394 342 KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ---QYDVNAIVD-RLLQF 417 (756)
Q Consensus 342 ~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k---~~~~~~~vd-~Ll~L 417 (756)
.|...++.+.|+ ++...|. ..++...++-|.+- .-.|+++..++-.--..+-.. +.+...|.. .....
T Consensus 269 ---ll~k~~~~~~~k---~~~~~mv-~~~v~k~l~~L~~r-kysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~ 340 (442)
T KOG2759|consen 269 ---LLDKGPDRETKK---DIASQMV-LCKVLKTLQSLEER-KYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGR 340 (442)
T ss_pred ---HhccCchhhHHH---HHHHHHH-hcCchHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCC
Confidence 111222233333 2222221 12344444444332 235766666554433333333 223333332 22223
Q ss_pred hhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHHH------Hhh
Q 004394 418 LEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILES------LTE 491 (756)
Q Consensus 418 L~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~------l~~ 491 (756)
|.=+..|..+.-|.- ++-+-+.+-+ .++.+|..++ +.-.+|...++++.=||||..+.+....+++. +.+
T Consensus 341 L~WSP~Hk~e~FW~e--Na~rlnenny-ellkiL~~lL-e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~ 416 (442)
T KOG2759|consen 341 LEWSPVHKSEKFWRE--NADRLNENNY-ELLKILIKLL-ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMN 416 (442)
T ss_pred cCCCccccccchHHH--hHHHHhhccH-HHHHHHHHHH-hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHH
Confidence 333444555555542 1111122222 2445555655 45568999999999999999999887777654 344
Q ss_pred hhccCChHHHHHHHHHHhhHhhh
Q 004394 492 NWEEEPSAEVRLHLLTAVMKCFF 514 (756)
Q Consensus 492 ~f~~e~~~~Vq~~lLtA~~Kl~~ 514 (756)
-..-++ ++||...|.|+=|+..
T Consensus 417 Llnh~d-~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 417 LLNHED-PEVRYHALLAVQKLMV 438 (442)
T ss_pred HhcCCC-chHHHHHHHHHHHHHh
Confidence 455566 9999999999888754
No 240
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=36.63 E-value=1.1e+02 Score=35.75 Aligned_cols=141 Identities=16% Similarity=0.097 Sum_probs=82.7
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cC--CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA--PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p--~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
.+...+.++|++|.-.|.-.+..++....-. .| +-+.+.++++.|.++ +...|....++.+-++..+.-.....
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~-v~sKDdaLqans~wvlrHlmyncq~~-- 507 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL-VMSKDDALQANSEWVLRHLMYNCQKN-- 507 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH-hhcchhhhhhcchhhhhhhhhcCcch--
Confidence 3455677888888878877777776654432 22 123456788899887 57778888888888887664322210
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChh--HHH----------HHHHHHHHHhcccchHHHH
Q 004394 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN--EIF----------DIMNLLEDRLQHANGAVVL 279 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~--e~~----------~il~~l~~~L~~~n~aVvl 279 (756)
..+.++.+--+.+++.-.++++==.|...|++|+.+.-.... +.. -+...+.+.+...|+.-..
T Consensus 508 ----ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~ 583 (743)
T COG5369 508 ----EKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEIL 583 (743)
T ss_pred ----hhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhh
Confidence 111122222245555544444433499999999998642221 111 1345556666666765555
Q ss_pred HHH
Q 004394 280 STI 282 (756)
Q Consensus 280 eai 282 (756)
+.+
T Consensus 584 ~~~ 586 (743)
T COG5369 584 EGC 586 (743)
T ss_pred hhH
Confidence 543
No 241
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=34.79 E-value=2.7e+02 Score=37.74 Aligned_cols=139 Identities=16% Similarity=0.249 Sum_probs=0.0
Q ss_pred chHHHHHh--HhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc------------------
Q 004394 175 FPPTLKHL--MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK------------------ 234 (756)
Q Consensus 175 ~i~~L~~l--LL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~------------------ 234 (756)
|.+.|..+ +..|.++.|+..|+..|.+|....+..+. ++.|..+-..++..+++.+.
T Consensus 1345 W~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs---~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~ 1421 (1780)
T PLN03076 1345 WFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFS---LPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDG 1421 (1780)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q ss_pred -----cCChhH-------HHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcc-ccchhHHHHHH
Q 004394 235 -----EFSEWA-------QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL-SMTDVHQQVYE 301 (756)
Q Consensus 235 -----~~~~W~-------Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~-~~~~~~~~~l~ 301 (756)
+.+.|. --.+.+++..|...=.....++++.+..++...|..+.--++.|+.++.. +......+..+
T Consensus 1422 ~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~ 1501 (1780)
T PLN03076 1422 DQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWL 1501 (1780)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHH
Q ss_pred HHHHHHHHhhcCCCc
Q 004394 302 RIKAPLLTLVSSGSP 316 (756)
Q Consensus 302 rl~~~L~~LLss~~~ 316 (756)
++...+..+....-|
T Consensus 1502 ~i~~~~~~lf~~T~p 1516 (1780)
T PLN03076 1502 EVVLSLKEAANATLP 1516 (1780)
T ss_pred HHHHHHHHHHHHhCC
No 242
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=34.63 E-value=52 Score=22.35 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChhhhHHHHH
Q 004394 115 MIRGLALRSLCSLRVANLVEYLV 137 (756)
Q Consensus 115 ~iR~LALrtLs~I~~~ei~e~l~ 137 (756)
.+|..|..+|++++.++-++.+.
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~ 24 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALI 24 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHH
Confidence 57889999999998887666543
No 243
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=34.15 E-value=55 Score=32.64 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 148 NSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 148 ~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
--.+||.|.-|++.+....++.+.-.+|.+.+..- +.| ++.+..-+...|..+....|
T Consensus 40 GLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~G-L~D-~~DIk~L~~~~l~kl~~~~p 97 (169)
T PF08623_consen 40 GLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAG-LKD-EHDIKMLCHLMLSKLAQLAP 97 (169)
T ss_dssp GGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHT-TSS--HHHHHHHHHHHHHHHHS-H
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhh-cCC-cHHHHHHHHHHHHHHHHhCH
Confidence 34799999999999999887776545677777777 588 88888878778888766544
No 244
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.85 E-value=2e+02 Score=27.19 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHhccCChhH-HHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcc
Q 004394 231 NRIKEFSEWA-QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL 290 (756)
Q Consensus 231 ~~l~~~~~W~-Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~ 290 (756)
+.-..-++|. -.++++=++.....++.+..++++.|..+|++.++-|-+-|.+++-++..
T Consensus 7 ~~ATsdd~~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~ 67 (122)
T cd03572 7 SKATSDDDEPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCE 67 (122)
T ss_pred HHHhcCCCCCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHh
Confidence 3333444554 35566666666666778888999999999999998888999998877653
No 245
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.58 E-value=3.4e+02 Score=34.52 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=46.7
Q ss_pred HHHHHHHhcCCCccc-------hhhhhhhhccC-CChhhHHHHHHHHHHccccCChHH-----HHHHHHHHHHcCCCChH
Q 004394 49 KKVISYMTIGIDVSA-------VFGEMVMCSAT-SDIVLKKMCYLYVGNYAKVNPDLA-----LLTINFLQRDCKDEDPM 115 (756)
Q Consensus 49 kKlI~~~~lG~Dvs~-------lF~~Vi~l~~s-~d~~~KkL~YLyl~~~~~~~~el~-----lL~iNtl~KDL~s~Np~ 115 (756)
-=|++-...|+..-. +...+...+.+ +.--+|..+.+.+..++...++-- .++.--+..-|.|+-|.
T Consensus 578 AFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpE 657 (1387)
T KOG1517|consen 578 AFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPE 657 (1387)
T ss_pred HHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHH
Confidence 356666666654321 12222334444 345577778888887776665532 24455566667777788
Q ss_pred HHHHHHHHHhcC
Q 004394 116 IRGLALRSLCSL 127 (756)
Q Consensus 116 iR~LALrtLs~I 127 (756)
|||.|+-+|+.+
T Consensus 658 VRaAAVFALgtf 669 (1387)
T KOG1517|consen 658 VRAAAVFALGTF 669 (1387)
T ss_pred HHHHHHHHHHHH
Confidence 888777777764
No 246
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.48 E-value=3.8e+02 Score=25.73 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 155 Aalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
..+-+.-+.+..+... .+.+..|++. +..+||.|+.-|+.+|..+.++.+
T Consensus 24 ~ileicD~In~~~~~~--k~a~ral~kr-l~~~n~~vql~AL~LLe~~vkNCG 73 (142)
T cd03569 24 SILEICDMIRSKDVQP--KYAMRALKKR-LLSKNPNVQLYALLLLESCVKNCG 73 (142)
T ss_pred HHHHHHHHHhCCCCCH--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHCC
Confidence 3344444444443332 3456677777 588999999999999988877544
No 247
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.21 E-value=3.1e+02 Score=29.44 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc
Q 004394 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 298 ~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
+.+..+.+++++++.+.++++|.-|++.+..++.+-|.
T Consensus 115 ~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~ 152 (282)
T PF10521_consen 115 QHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPA 152 (282)
T ss_pred HhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCCh
Confidence 45667889999999999999999999999999987653
No 248
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.13 E-value=2.1e+02 Score=32.36 Aligned_cols=63 Identities=24% Similarity=0.199 Sum_probs=48.7
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
+..-+.|.+.-|||.|..++..++..+|+... -...++.+..+ ..|.|..|....+.++..+.
T Consensus 63 Ll~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~-i~D~~~~vR~~~~qll~~~i 127 (393)
T KOG2149|consen 63 LLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLREL-ILDDDSLVRDALYQLLDSLI 127 (393)
T ss_pred HHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhh-hcCccccHHHHHHHHHHHHH
Confidence 44557899999999999999999988887652 12345566665 57999999999888887754
No 249
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=31.94 E-value=43 Score=33.35 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=15.9
Q ss_pred CCccccccccccCh----hHHHHhhhc
Q 004394 716 PPSLKLNSKAILDP----GTFQQKWRQ 738 (756)
Q Consensus 716 ~~~~~~~~~~~~~~----~~~~~~~~~ 738 (756)
|-.++..+.+..|- -+||++|+.
T Consensus 196 p~~~t~s~s~~~~~~~~~~qy~~~~~~ 222 (225)
T KOG3397|consen 196 PKMVTRSTSPIVDVNTIDHQYMRKWLK 222 (225)
T ss_pred ccceecCCCCCCChhhHHHHHHHhhcC
Confidence 33677777666554 469999985
No 250
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.62 E-value=9.9e+02 Score=28.89 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=31.1
Q ss_pred hccCChhHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 004394 233 IKEFSEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 233 l~~~~~W~Qi~IL~lL~~y~p~d~--~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
+++...-.-..+++.+..+.-.|. .-+..++..+...++..|.-|.-+++.+++.+.
T Consensus 333 in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~Vr~i~~llK~rn~~v~~~~~~~~lsLr 391 (704)
T KOG2153|consen 333 INDPGRPVSSGCIQTIKTLFENDNGGSGSLAIVRIINSLLKTRNYEVLPDMITTFLSLR 391 (704)
T ss_pred hcCCCCchHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhhhhcccchhhHHHHHHhcc
Confidence 344444455555666665554433 223445555555666666666666666666554
No 251
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=31.57 E-value=9.7e+02 Score=28.69 Aligned_cols=449 Identities=14% Similarity=0.134 Sum_probs=217.5
Q ss_pred ChHHHHHHHHHHHHcCCCChHH-HHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc-CCcccC
Q 004394 95 PDLALLTINFLQRDCKDEDPMI-RGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCID 172 (756)
Q Consensus 95 ~el~lL~iNtl~KDL~s~Np~i-R~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~-p~~~~~ 172 (756)
+++-+++-=++++.+..++|.. .+.+=|-++ ..+|.-+++-.-.++.|..+.|..-..|+-.+..+-+.- |....
T Consensus 55 ~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~--~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~Elp~~~w- 131 (858)
T COG5215 55 DQLRMVAGLILKNSLHANDPELQKGCSQRWLG--MRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARMELPNSLW- 131 (858)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhCccccc-
Confidence 3443444445555555555433 356666666 455666777777777788888888888888777776642 33221
Q ss_pred CCchHHHHHhHhcCCC-hhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccH--HHHHHHHHH-h-ccCChhHHHHHHHH
Q 004394 173 ADFPPTLKHLMLNDPD-PQVVANCLSALQEIWSLEASTSEEASREREALISK--PVIYYLLNR-I-KEFSEWAQCLVLEL 247 (756)
Q Consensus 173 ~~~i~~L~~lLL~D~d-~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~--~~~~~Ll~~-l-~~~~~W~Qi~IL~l 247 (756)
+++.+.+.+. ..|.. ..+...++.++..++.... |+ .++.. .++..++.. + ++.+--...--|+.
T Consensus 132 p~lm~~mv~n-vg~eqp~~~k~~sl~~~gy~ces~~-------Pe--~li~~sN~il~aiv~ga~k~et~~avRLaaL~a 201 (858)
T COG5215 132 PGLMEEMVRN-VGDEQPVSGKCESLGICGYHCESEA-------PE--DLIQMSNVILFAIVMGALKNETTSAVRLAALKA 201 (858)
T ss_pred hHHHHHHHHh-ccccCchHhHHHHHHHHHHHhhccC-------HH--HHHHHhhHHHHHHHHhhcccCchHHHHHHHHHH
Confidence 3444444443 34544 4467788888888776432 11 11110 112222211 1 12233333444444
Q ss_pred HHh---hCC---CChhHHHHHHHHHHHHhcccchHHHHHHHHHH---HhhccccchhHHHHHHHH-HHHHHHhhcCCCcc
Q 004394 248 VAK---YVP---LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF---LHLTLSMTDVHQQVYERI-KAPLLTLVSSGSPE 317 (756)
Q Consensus 248 L~~---y~p---~d~~e~~~il~~l~~~L~~~n~aVvleaik~i---i~l~~~~~~~~~~~l~rl-~~~L~~LLss~~~n 317 (756)
|.. +.. ..++|..-+|.++.+.-+.....+.-+|.-|+ +++.- ..+ +..++++ ...+++++.+...+
T Consensus 202 L~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY--~fm-~~ymE~aL~alt~~~mks~nd~ 278 (858)
T COG5215 202 LMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYY--KFM-QSYMENALAALTGRFMKSQNDE 278 (858)
T ss_pred HHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHhcCcchH
Confidence 433 111 13345555777777777766666654444444 43321 111 1233332 33456777776666
Q ss_pred hHHHHHHHHHHHHhh----------CCcc-ccc-------------ccceeeec-----CCCCHHHHHHH---HHHHHHh
Q 004394 318 QSYAVLSHLHILVMR----------APFI-FAS-------------DYKHFYCQ-----YNEPSYVKKLK---LEMLTAV 365 (756)
Q Consensus 318 irYvaL~~l~~L~~~----------~p~l-f~~-------------~~~~f~c~-----~~dp~~IK~~k---LdIL~~L 365 (756)
+..-+.+--..++.. .|++ .++ .+-.+.|+ ++|+-.+.+.+ |++-..+
T Consensus 279 va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~ 358 (858)
T COG5215 279 VAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL 358 (858)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH
Confidence 665555554444432 1211 011 11112343 23333333332 3333333
Q ss_pred cCCCCHHHHHHHHHHHhh----hCCHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHhhh----cCchhhHHHHHHHH
Q 004394 366 ANESNTYEIVTELCEYAA----NVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEM----EKDYVTAEALVLVK 434 (756)
Q Consensus 366 ~n~~Nv~~Iv~EL~~Yl~----~~D~~~~~~~I~aIg~lA~k~~~~---~~~vd~Ll~LL~~----~~~~v~~E~i~~i~ 434 (756)
+.. .|++-.++|+. +.|-.=+..++-+.|.+-.- |+. +.+|...+.-+.. ..-.|.+-+...+-
T Consensus 359 ~gd----~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g 433 (858)
T COG5215 359 KGD----KIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFG 433 (858)
T ss_pred hhh----HhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHH
Confidence 332 23333444443 33333455677777776433 321 3455554443332 11122222221222
Q ss_pred HHHhh-----CCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCCh------------HHHHHHHhhhh--cc
Q 004394 435 DLLRK-----YPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDA------------PYILESLTENW--EE 495 (756)
Q Consensus 435 ~Il~~-----~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~------------~~iL~~l~~~f--~~ 495 (756)
.|-.. .|..+- ...+...+..-.+.|..-..+.|-.-.+.++++.+ +.++..+++.- ..
T Consensus 434 ~iad~va~~i~p~~Hl--~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~ 511 (858)
T COG5215 434 AIADHVAMIISPCGHL--VLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELAL 511 (858)
T ss_pred HHHHHHHHhcCccccc--cHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhc
Confidence 22211 233321 11222222223355777778899877776666431 34455444321 12
Q ss_pred CChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHh-------hhc--CCChHHHhHHHHHHHHhcCCHHHHHhhcCCCCC
Q 004394 496 EPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAA-------GLA--DFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQ 566 (756)
Q Consensus 496 e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~-------~~~--d~d~dVrdRA~~Y~rLL~~~~e~a~~vv~~~~p 566 (756)
.. ...|..+-+|+.-+..-+|+...+++..+++. +.. +.-.+++||+. ...|.++-......|+....|
T Consensus 512 Ne-~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~-~~elqSN~~~vl~aiir~~~~ 589 (858)
T COG5215 512 NE-SNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLL-VEELQSNYIGVLEAIIRTRRR 589 (858)
T ss_pred cc-hhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHhcCC
Confidence 22 56788899999988888887666665554432 211 12377888877 455555434455556654444
Q ss_pred CC
Q 004394 567 AV 568 (756)
Q Consensus 567 ~i 568 (756)
.|
T Consensus 590 ~i 591 (858)
T COG5215 590 DI 591 (858)
T ss_pred Cc
Confidence 33
No 252
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=31.30 E-value=2e+02 Score=35.13 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=54.9
Q ss_pred HHHHHHhcCChh---hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc---cCCCchHHHHHhHhcCCChhHH
Q 004394 119 LALRSLCSLRVA---NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC---IDADFPPTLKHLMLNDPDPQVV 192 (756)
Q Consensus 119 LALrtLs~I~~~---ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~---~~~~~i~~L~~lLL~D~d~~Vv 192 (756)
.|+..|++++.| .+... |-..+.. |--|..|+.-+..+.+..|..+ .+..++..|.++|..|.|..|+
T Consensus 55 ~~~~il~~~~~P~~K~~~~~----l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~ 128 (668)
T PF04388_consen 55 RALEILVGVQEPHDKHLFDK----LNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVV 128 (668)
T ss_pred HHHHHHHhcCCccHHHHHHH----HHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHH
Confidence 455666666665 33333 3333332 3456667777777777777654 2445566666666789999999
Q ss_pred HHHHHHHHHHHhhccc
Q 004394 193 ANCLSALQEIWSLEAS 208 (756)
Q Consensus 193 ~~Al~aL~eI~~~~~~ 208 (756)
..|+.+|.-+..+-|.
T Consensus 129 ~~al~~LimlLP~ip~ 144 (668)
T PF04388_consen 129 SSALLVLIMLLPHIPS 144 (668)
T ss_pred HHHHHHHHHHhccccc
Confidence 9999999988876654
No 253
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.83 E-value=2e+03 Score=32.04 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhh----------------------hHHHHHHHHHhhcCCCChHHHHHHHH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN----------------------LVEYLVGPLGLGLKDNNSYVRTVAVI 157 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e----------------------i~e~l~~~v~~~L~d~~pyVRKkAal 157 (756)
+..-+..+|+.|.+-.+-..++|-.+.++... -.-..++.|..++.+.++-+++.+..
T Consensus 927 ~~~a~~~~elr~~a~~~~~~il~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~i~ldal~~~l~~~~~~~~~~g~~ 1006 (3550)
T KOG0889|consen 927 LFYATSCKELRDEAQDFLEAILRHFALHGVVLYTGSNQLKHSNFGSNLQYKKMLDPSTFLDALVESLSHENSEMRPAGVR 1006 (3550)
T ss_pred HHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHhhcchhccccccccccccccccCHHHHHHHHHHHHhccchhhhhhHHH
Confidence 55677789999998888887777766653331 12456788889999999999999999
Q ss_pred HHHHHhhhc
Q 004394 158 GVLKLYHIS 166 (756)
Q Consensus 158 al~kl~~~~ 166 (756)
|+..++...
T Consensus 1007 ~l~~i~~~~ 1015 (3550)
T KOG0889|consen 1007 ALKVIFSTS 1015 (3550)
T ss_pred HHHHHHHHH
Confidence 999988643
No 254
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.77 E-value=94 Score=34.10 Aligned_cols=70 Identities=16% Similarity=0.388 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcccchH--HHHHHHHHHHhhccccchhHHHHHHH--HHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 260 FDIMNLLEDRLQHANGA--VVLSTIKVFLHLTLSMTDVHQQVYER--IKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~a--Vvleaik~ii~l~~~~~~~~~~~l~r--l~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
.+|+..+...+|+.++. +..+| .-|.++-...|+. ..++.+ .+..+..|++++++++||-||+++..++.
T Consensus 355 y~i~k~L~~~lq~n~~nt~i~vAc-~Di~~~Vr~~PE~-~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 355 YEIVKVLKKYLQSNNPNTWICVAC-SDIFQLVRASPEI-NAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHHHHHHHhcCCCCceEeeeH-hhHHHHHHhCchH-HHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 45777788888877654 22222 2222222122222 123322 34557789999999999999999987764
No 255
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=30.10 E-value=2.8e+02 Score=26.18 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 156 alal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
++.+.-+.+..++.. .+.+..|++. +..+||.|+.-|+.+|..+.++.+.
T Consensus 21 ~l~icD~i~~~~~~~--k~a~r~l~kr-l~~~n~~v~l~AL~lLe~~vkNcg~ 70 (133)
T smart00288 21 ILEICDLINSTPDGP--KDAVRLLKKR-LNNKNPHVALLALTLLDACVKNCGS 70 (133)
T ss_pred HHHHHHHHhCCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHCCH
Confidence 333444444444333 3456667777 5899999999999999988876543
No 256
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=30.05 E-value=2.5e+02 Score=26.06 Aligned_cols=114 Identities=14% Similarity=0.141 Sum_probs=59.1
Q ss_pred CCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCC----CChHHHHHHHHHHhcCChhhhH
Q 004394 58 GIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKD----EDPMIRGLALRSLCSLRVANLV 133 (756)
Q Consensus 58 G~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s----~Np~iR~LALrtLs~I~~~ei~ 133 (756)
......+|.+++++++++ .... +..+.+...+-.|+.+ .-..-|-..++..-.-..+.+.
T Consensus 21 P~~Wp~~l~~l~~~~~~~-~~~~---------------~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~ 84 (148)
T PF08389_consen 21 PQQWPDFLEDLLQLLQSS-PQHL---------------ELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDIL 84 (148)
T ss_dssp TTTSTTHHHHHHHHHHTT-HHHH---------------HHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCchHHHHHHHHhccc-hhHH---------------HHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHH
Confidence 456677889999888774 2212 2223333444444443 1122333333332211244455
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cCCcccCCCchHHHHHhHhcCCC
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPD 188 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p~~~~~~~~i~~L~~lLL~D~d 188 (756)
+.+...+...-...++.+.+++.-|+...... .++.+...++++.+.++ +.+++
T Consensus 85 ~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~~~~l~~~~~~-l~~~~ 139 (148)
T PF08389_consen 85 EILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIINSNLLNLIFQL-LQSPE 139 (148)
T ss_dssp HHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHSSSHHHHHHHH-TTSCC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhccHHHHHHHHHH-cCCHH
Confidence 54444444433333388889999988887763 33344445577777776 44433
No 257
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=29.74 E-value=4.4e+02 Score=24.12 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhhcC-CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHH-HHHHHHHHHHHhhc
Q 004394 131 NLVEYLVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV-ANCLSALQEIWSLE 206 (756)
Q Consensus 131 ei~e~l~~~v~~~L~-d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv-~~Al~aL~eI~~~~ 206 (756)
+++..+.|.+.++|. ...+..|=.|.|-+..+..+.|= .++.++.+.+.++....+.-. ..++.+|..+++..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L---~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL---SDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC---cHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 466778888888888 77788888888888888776542 133444444444454443333 67777777777654
No 258
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=29.19 E-value=2e+02 Score=25.13 Aligned_cols=67 Identities=21% Similarity=0.219 Sum_probs=49.7
Q ss_pred HHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChh---hHHHHHHHHHhhhcCCChHHHhHHHHHHHH
Q 004394 483 PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPE---TQKVLGAALAAGLADFHQDVHDRALFYHRL 549 (756)
Q Consensus 483 ~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e---~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rL 549 (756)
.++|+.|..-+...++.+||..+|.++..+...+.+. +-+.+-.+|..+..+.+.++-..|+...++
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4567777666655555899999999999998766443 345566778888888899999998876553
No 259
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=29.18 E-value=6e+02 Score=28.18 Aligned_cols=75 Identities=17% Similarity=0.212 Sum_probs=47.9
Q ss_pred CChhhhHHHHHHHHHhhc----------CCCChHHHHHHHHHHHHHhhhcCCcccCCCchH----HHHHhHhcCCChh-H
Q 004394 127 LRVANLVEYLVGPLGLGL----------KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPP----TLKHLMLNDPDPQ-V 191 (756)
Q Consensus 127 I~~~ei~e~l~~~v~~~L----------~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~----~L~~lLL~D~d~~-V 191 (756)
|...-.+-.++|.+..|+ .+.+..+|.-|+-.+..+++.+.... +++.+ .+.+.+++...+. .
T Consensus 250 l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y--~~l~~ri~~tl~k~l~d~~~~~~~ 327 (343)
T cd08050 250 LHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY--NTLQPRITRTLLKALLDPKKPLTT 327 (343)
T ss_pred CchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHcCCCCCcch
Confidence 445555666777777776 34556999999999999999877665 44444 4444433333333 3
Q ss_pred HHHHHHHHHHHH
Q 004394 192 VANCLSALQEIW 203 (756)
Q Consensus 192 v~~Al~aL~eI~ 203 (756)
...|+.-|..+.
T Consensus 328 ~YGAi~GL~~lG 339 (343)
T cd08050 328 HYGAIVGLSALG 339 (343)
T ss_pred hhHHHHHHHHhC
Confidence 666666666653
No 260
>PF14961 BROMI: Broad-minded protein
Probab=29.02 E-value=8.2e+02 Score=31.83 Aligned_cols=179 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHhhhCCHHHHH-HHHHHHHHHHhhc--CChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch-------
Q 004394 376 TELCEYAANVDIPIAR-ESIRAVGKIALQQ--YDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH------- 445 (756)
Q Consensus 376 ~EL~~Yl~~~D~~~~~-~~I~aIg~lA~k~--~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~------- 445 (756)
+|++-.+.+.|+.|-+ +.|+-|..=.+.. |-.+..++..-.=-..+.+.--+.++..+.+=++..|+..+
T Consensus 26 EeiLLhLEeTDeNFHnYEFVKylR~~Ies~lG~lIeeE~ek~~~~~~q~~~s~~dtlV~~Vt~k~~eS~EY~eMmhsLk~ 105 (1296)
T PF14961_consen 26 EEILLHLEETDENFHNYEFVKYLRQYIESTLGPLIEEELEKCTSSQGQGEESGQDTLVQHVTKKIVESKEYKEMMHSLKN 105 (1296)
T ss_pred HHHHHhhhcccccchhhHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCCCccHhHHHHHHHHHhhccHHHHHHHHHHHH
Q ss_pred HHHHHHHHhh----hccCCchhHHHHHHh--HhccCCCCCCC-----------hHHHHHHHhhhhccCChHHHHHHHHHH
Q 004394 446 DCIAVVGSIS----SQNVQEPKAKAALIW--MLGEYSQDMQD-----------APYILESLTENWEEEPSAEVRLHLLTA 508 (756)
Q Consensus 446 ~~~~~l~~l~----~~~i~~p~ak~a~iW--iLGEy~~~i~~-----------~~~iL~~l~~~f~~e~~~~Vq~~lLtA 508 (756)
.+..++..++ ++.....+......- ..+.|++...+ ..+-++.++++.....+.+||...+..
T Consensus 106 ~m~~vVeSLin~~eEdq~~~~e~~sk~~~~qs~s~~sDscSDSdSSfnqs~~F~qe~lq~i~d~ld~~~P~evR~eAlq~ 185 (1296)
T PF14961_consen 106 EMKTVVESLINKFEEDQMRLEESASKSQHEQSSSQYSDSCSDSDSSFNQSYFFCQEQLQLIADKLDPGQPKEVRLEALQI 185 (1296)
T ss_pred HHHHHHHHHHHhhhHHhhhhhhhHHHHhhccccCcccCCCCcccccccccchhcHHHHHHHHHhcCCCCchHHHHHHHHH
Q ss_pred hhHhhhcC--ChhhHHHHHHHHHhhhcCCChHHHhHH-HHHHHHhcCCH
Q 004394 509 VMKCFFKR--PPETQKVLGAALAAGLADFHQDVHDRA-LFYHRLLQYNV 554 (756)
Q Consensus 509 ~~Kl~~~~--p~e~~~~l~~vL~~~~~d~d~dVrdRA-~~Y~rLL~~~~ 554 (756)
+.|..... ..|.-+.+++-|..+..|.|+.+.|++ .+|.++|+..|
T Consensus 186 Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSp 234 (1296)
T PF14961_consen 186 LCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMFSSSP 234 (1296)
T ss_pred HhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCc
No 261
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=28.76 E-value=2.9e+02 Score=25.06 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=36.5
Q ss_pred HHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC
Q 004394 80 KKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL 127 (756)
Q Consensus 80 KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I 127 (756)
..-..+.++.+...+++.+--++..+.|=++++||.+.-.||..|=.+
T Consensus 17 ~~~~i~~i~d~~~~~~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~l 64 (115)
T cd00197 17 DWPLIMEICDLINETNVGPKEAVDAIKKRINNKNPHVVLKALTLLEYC 64 (115)
T ss_pred CHHHHHHHHHHHHCCCccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 334445555555566777778999999999999999999999887554
No 262
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=28.71 E-value=3e+02 Score=27.68 Aligned_cols=94 Identities=22% Similarity=0.323 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004394 43 SKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALR 122 (756)
Q Consensus 43 ~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALr 122 (756)
.-++.+.+-=++. .+. ...++.++..+.-.+.+..+-+|-.+......+|+-+ ..-|.+...| +.||..|++
T Consensus 28 ~ek~~lW~~R~~l-~~~--p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~A---L~LL~~~f~~--~~VR~yAv~ 99 (184)
T PF00613_consen 28 EEKELLWKYRYYL-MNN--PEALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDA---LELLSPNFPD--PFVRQYAVR 99 (184)
T ss_dssp HHHHHHHHTHHHH-TTS--GGGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHH---HHCTSTT-----HHHHHHHHH
T ss_pred HHHHHHHHCCHHh-hhC--chHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHH---HHHHHhhccH--HHHHHHHHH
Confidence 3455666644443 223 3357777777777888877888888877766666654 3455555554 999999999
Q ss_pred HHhcCChhhhHHHHHHHHHhhcC
Q 004394 123 SLCSLRVANLVEYLVGPLGLGLK 145 (756)
Q Consensus 123 tLs~I~~~ei~e~l~~~v~~~L~ 145 (756)
.|.++...++..++ +.+.++|+
T Consensus 100 ~L~~~~d~~l~~yL-pQLVQaLr 121 (184)
T PF00613_consen 100 RLESLSDEELLFYL-PQLVQALR 121 (184)
T ss_dssp HHCTS-HHHHHHHH-HHHHHHGG
T ss_pred HHHHcCchHHHHHH-HHHHHHhe
Confidence 99998877776654 45555554
No 263
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=28.71 E-value=41 Score=38.63 Aligned_cols=127 Identities=21% Similarity=0.232 Sum_probs=78.0
Q ss_pred CChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC--Chhhh--------------------
Q 004394 75 SDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANL-------------------- 132 (756)
Q Consensus 75 ~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I--~~~ei-------------------- 132 (756)
.+--.||..|=||..++..-+++.. -.-+.--++|+||--|++||..++.| +...+
T Consensus 24 ~~~~~~~~~ygyw~~~~pd~~~~g~--p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a 101 (728)
T KOG4535|consen 24 IKSIEKKVLYGYWSAFIPDTPELGS--PSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIA 101 (728)
T ss_pred HhhhhhhhhhceeeeecCCCCCCCC--ceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHH
Confidence 3445799999999999887666411 11122357899999999999998876 11111
Q ss_pred --HHHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhhcCCcccC----CCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 133 --VEYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHISAPTCID----ADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 133 --~e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~~~p~~~~~----~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
+..+...+.-.| ...+|-|---.+-|+..+....|-.-.+ -++..+++.+ .+.+|+.|..+++.++..|..
T Consensus 102 ~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~-i~~~d~~v~vs~l~~~~~~v~ 179 (728)
T KOG4535|consen 102 CSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPY-IRHKDVNVRVSSLTLLGAIVS 179 (728)
T ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhcCCCChhhHHHHHHHHHHh
Confidence 111122222222 2233444444555666655555532111 3356778887 689999999999998887754
No 264
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=27.80 E-value=6.7e+02 Score=25.58 Aligned_cols=130 Identities=13% Similarity=-0.018 Sum_probs=72.4
Q ss_pred hhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC--ChhhhHHHHHHHHHhhcCC
Q 004394 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKD 146 (756)
Q Consensus 69 i~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I--~~~ei~e~l~~~v~~~L~d 146 (756)
-.+..++-.+.+-++-.++......-.+..+-.+-.+..+. +.=..+=++|-+.+|.+ ..++ +.+.+.+-..|
T Consensus 52 ~~Lw~~~~~E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~-~~Wd~vD~~~~~i~g~~~~~~~~----~~~~l~~W~~s 126 (208)
T cd07064 52 LELWQQPEREYQYVAIDLLRKYKKFLTPEDLPLLEELITTK-SWWDTVDSLAKVVGGILLADYPE----FEPVMDEWSTD 126 (208)
T ss_pred HHHHcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC-chHHHHHHHHHHHhHHHHhCChh----HHHHHHHHHcC
Confidence 35777777777777766666553333232222222233332 22233334555554442 2222 24557777789
Q ss_pred CChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 147 NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 147 ~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
.+.++||.|+.+.++.-+. .+ . ..+...+.. ++.|++--|.=+.==+|-|+.+.+|.
T Consensus 127 ~~~W~rR~ai~~~l~~~~~-~~-~--~~l~~~~~~-~~~d~e~fI~KAiGW~LRe~~k~d~~ 183 (208)
T cd07064 127 ENFWLRRTAILHQLKYKEK-TD-T--DLLFEIILA-NLGSKEFFIRKAIGWALREYSKTNPD 183 (208)
T ss_pred CcHHHHHHHHHHHHHHHHc-cC-H--HHHHHHHHH-hCCChHHHHHHHHHHHHHHHhccCHH
Confidence 9999999999987664332 11 1 122333444 36787777766666678888877653
No 265
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=2.1e+02 Score=33.63 Aligned_cols=87 Identities=20% Similarity=0.222 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHhcCCh-hhh-HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChh
Q 004394 113 DPMIRGLALRSLCSLRV-ANL-VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQ 190 (756)
Q Consensus 113 Np~iR~LALrtLs~I~~-~ei-~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~ 190 (756)
...+..+|+-..+-|.- +++ .+.+...+-..+.-.++++||.--+|..-++-.+|+. +..+.|.+. .+|.|..
T Consensus 617 ea~ie~~a~Lg~AliamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnPQm----~vfDtL~r~-shd~dl~ 691 (881)
T COG5110 617 EALIESLALLGCALIAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNPQM----NVFDTLERS-SHDGDLN 691 (881)
T ss_pred HHHHHHHHHhhhHHhhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCcch----HHHHHHHHh-ccccchh
Confidence 44666555544443321 222 3445555566666689999999999999999999985 367888887 7999999
Q ss_pred HHHHHHHHHHHHHh
Q 004394 191 VVANCLSALQEIWS 204 (756)
Q Consensus 191 Vv~~Al~aL~eI~~ 204 (756)
|..|++.++.-|..
T Consensus 692 v~~ntIfamGLiGA 705 (881)
T COG5110 692 VIINTIFAMGLIGA 705 (881)
T ss_pred HHHHHHHHhhcccc
Confidence 99999999887753
No 266
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=26.71 E-value=9.2e+02 Score=28.50 Aligned_cols=85 Identities=9% Similarity=0.114 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHHhhCCcccccccceeeecCCCC-HHHHHHHHHHHHHhcCCCCHH--HHHHHHHHHhhhCCHHHHHHHH
Q 004394 318 QSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEP-SYVKKLKLEMLTAVANESNTY--EIVTELCEYAANVDIPIARESI 394 (756)
Q Consensus 318 irYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp-~~IK~~kLdIL~~L~n~~Nv~--~Iv~EL~~Yl~~~D~~~~~~~I 394 (756)
-+|+..+.+...+.. ++-+.+.++..+..|| .|||..-+.++|.|....-.+ .++.=+..-+.+.+.-+..++-
T Consensus 173 ~k~l~~~~fesflk~---l~fr~levle~ls~d~i~~Vk~qvv~~VydLL~a~peqe~nLl~L~INKlGDk~~kvsskas 249 (821)
T COG5593 173 NKYLKQRIFESFLKN---LRFRVLEVLEVLSHDPIQYVKKQVVRLVYDLLEARPEQEVNLLHLFINKLGDKRDKVSSKAS 249 (821)
T ss_pred chHHHHHHHHHHHHH---HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhhccchhhhhhhhh
Confidence 345554444433322 2223334445566777 799999999999886554222 2333333344444443444443
Q ss_pred HHHHHHHhhcC
Q 004394 395 RAVGKIALQQY 405 (756)
Q Consensus 395 ~aIg~lA~k~~ 405 (756)
-.|-++-..+|
T Consensus 250 Y~ilkLe~~hP 260 (821)
T COG5593 250 YVILKLELLHP 260 (821)
T ss_pred HHHHHHHhcCC
Confidence 34434433344
No 267
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=26.68 E-value=6e+02 Score=29.00 Aligned_cols=80 Identities=18% Similarity=0.318 Sum_probs=49.2
Q ss_pred HHhHhccCCCCCC-ChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhh-cCChhhHHHHH---HHHHhhhcCCChHHHhH
Q 004394 468 LIWMLGEYSQDMQ-DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFF-KRPPETQKVLG---AALAAGLADFHQDVHDR 542 (756)
Q Consensus 468 ~iWiLGEy~~~i~-~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~-~~p~e~~~~l~---~vL~~~~~d~d~dVrdR 542 (756)
+.+++-+|.+.-+ -++.+++.+.+-|.... ......+|.-+--++= ..|.+.+.+.. +.+..|.++.+.-|-+|
T Consensus 282 LaYcivQfveKd~kl~~~VIrglLK~WP~tn-S~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~HFQVAEr 360 (457)
T KOG2085|consen 282 LAYCIVQFVEKDPKLTETVIRGLLKYWPKTN-SSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPHFQVAER 360 (457)
T ss_pred cceeeeeeeccCccccHHHHHHHHHhcCCCC-CcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChhHHHHHH
Confidence 4566666655433 26778888888887665 3333444444333331 23444444333 33556778899999999
Q ss_pred HHHHHH
Q 004394 543 ALFYHR 548 (756)
Q Consensus 543 A~~Y~r 548 (756)
|.+||.
T Consensus 361 aL~~wn 366 (457)
T KOG2085|consen 361 ALYLWN 366 (457)
T ss_pred HHHHHh
Confidence 999996
No 268
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=26.54 E-value=6e+02 Score=24.67 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHH
Q 004394 42 DSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLAL 121 (756)
Q Consensus 42 ~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LAL 121 (756)
...++.+.+.-++.... ....+.++..+..++....+-.|-.+..-...+|+-++ .-|..... |+.||..|+
T Consensus 21 ~~ek~llw~~R~~~~~~---p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL---~LL~~~~~--~~~vr~yAv 92 (152)
T cd00864 21 EEEKELLWKFRYYLLNV---PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDAL---ELLSPKYP--DPVVRQYAV 92 (152)
T ss_pred HHHHHHHHHHHHHHhhC---hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHH---HHcCCcCC--CHHHHHHHH
Confidence 56777887877766532 23467777777777777777777777766666665543 45555444 499999999
Q ss_pred HHHhcCChhhhHHHHHHHHHhhcC
Q 004394 122 RSLCSLRVANLVEYLVGPLGLGLK 145 (756)
Q Consensus 122 rtLs~I~~~ei~e~l~~~v~~~L~ 145 (756)
+.|.+....++.-++-. +.++|+
T Consensus 93 ~~L~~~~~~~l~~ylpQ-LVQaLk 115 (152)
T cd00864 93 RVLESASDDELLLYLPQ-LVQALK 115 (152)
T ss_pred HHHHhCCHHHHHHHHHH-HHHHHh
Confidence 99999888888766544 444444
No 269
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=25.50 E-value=1.2e+02 Score=30.48 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=38.5
Q ss_pred ccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHH
Q 004394 90 YAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVR 152 (756)
Q Consensus 90 ~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVR 152 (756)
-...+|+-+ ..-|..-.. +||.||.-|+|+|-+....++.-|+-.-|+.+=-|...||+
T Consensus 65 W~pi~p~~A---Lell~~~y~-~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLryd~~~~l~ 123 (175)
T cd00871 65 WAPVSPVQA---LSLFTPQYP-GHPLVLQYAVRVLESYPVETVFFYIPQIVQALRYDKMGYVE 123 (175)
T ss_pred CCCCCHHHH---HHHhCcccC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccccchHH
Confidence 344455443 344444443 48999999999999999999888766555443344444443
No 270
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=25.38 E-value=7.1e+02 Score=25.08 Aligned_cols=96 Identities=22% Similarity=0.306 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHH
Q 004394 43 SKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALR 122 (756)
Q Consensus 43 ~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALr 122 (756)
.-++.+.|-=.+... +....++.++.++.=++....+=.|-.+..-...+|+-+ ..-|..... |+.||..|++
T Consensus 26 eek~llW~~R~~~l~--~~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~a---L~LL~~~~~--~~~Vr~yAV~ 98 (184)
T smart00145 26 EEKDLIWKFRHYYLT--NNPKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDA---LELLSPKFP--DPFVRAYAVE 98 (184)
T ss_pred HHHHHHHHChHHHHh--cChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHH---HHHhCccCC--CHHHHHHHHH
Confidence 445566555433321 223335555555666666655666666666665555544 455555555 7899999999
Q ss_pred HHhcCChhhhHHHHHHHHHhhcCC
Q 004394 123 SLCSLRVANLVEYLVGPLGLGLKD 146 (756)
Q Consensus 123 tLs~I~~~ei~e~l~~~v~~~L~d 146 (756)
.|.+....++.-++-. +.++|+.
T Consensus 99 ~L~~~~d~~l~~yLpQ-LVQaLr~ 121 (184)
T smart00145 99 RLESASDEELLLYLLQ-LVQALKY 121 (184)
T ss_pred HHHhCCHHHHHHHHHH-HHHHHHc
Confidence 9999988888766544 4444443
No 271
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=25.05 E-value=3.1e+02 Score=24.82 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 153 TVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 153 KkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
....+-+..+.+.+++.. .+....|.+. +.++|+.|+.-|+.+|..+.++.+.
T Consensus 18 ~~~i~~i~d~~~~~~~~~--~~~~~~l~kR-l~~~~~~~~lkaL~lLe~lvkN~g~ 70 (115)
T cd00197 18 WPLIMEICDLINETNVGP--KEAVDAIKKR-INNKNPHVVLKALTLLEYCVKNCGE 70 (115)
T ss_pred HHHHHHHHHHHHCCCccH--HHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHccH
Confidence 344455555555555554 4567788887 5889999999999999999876543
No 272
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=25.04 E-value=2.3e+02 Score=27.89 Aligned_cols=110 Identities=16% Similarity=0.144 Sum_probs=56.7
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHhhh---cCchhhHHHH
Q 004394 357 LKLEMLTAVA--NESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-VNAIVDRLLQFLEM---EKDYVTAEAL 430 (756)
Q Consensus 357 ~kLdIL~~L~--n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~-~~~~vd~Ll~LL~~---~~~~v~~E~i 430 (756)
...+||..+. .+.-..+|++++.+.+-....+-...-+..++.+..++|- .-.|.+.+-++++. =...+....+
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a~~ll 116 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVAIGLL 116 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4444554443 3444567777777766543322223446677777777662 22344444444443 2233444445
Q ss_pred HHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHH
Q 004394 431 VLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAAL 468 (756)
Q Consensus 431 ~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~ 468 (756)
..+.=+++-.++.++..+.++.+.+.. .+.+++.++
T Consensus 117 ~Al~PLi~~s~~lrd~lilvLRKamf~--r~~~~R~~A 152 (158)
T PF14676_consen 117 RALLPLIKFSPSLRDSLILVLRKAMFS--RELDARQMA 152 (158)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT---SSHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHcc--ccHHHHHHH
Confidence 566677888888888877777765421 345565544
No 273
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=24.73 E-value=1e+02 Score=21.77 Aligned_cols=30 Identities=33% Similarity=0.345 Sum_probs=24.7
Q ss_pred CCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 173 ~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
.+.++.|.++ +...|+.++..|+.+|..|.
T Consensus 11 ~g~i~~L~~l-l~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 11 AGGLPALVEL-LKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHc
Confidence 5568888887 57889999999999988764
No 274
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=24.31 E-value=8.8e+02 Score=25.77 Aligned_cols=153 Identities=14% Similarity=0.136 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHhhhCC---HHHH-----HHHHHHHHHHHhhcCChhHHHHHHHHHhhhcC--------chhhHHHHHHH
Q 004394 370 NTYEIVTELCEYAANVD---IPIA-----RESIRAVGKIALQQYDVNAIVDRLLQFLEMEK--------DYVTAEALVLV 433 (756)
Q Consensus 370 Nv~~Iv~EL~~Yl~~~D---~~~~-----~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~--------~~v~~E~i~~i 433 (756)
+-..|+.+|...+.+.- .++. .-.+-++..+|+.- ...+.+.++++++..+ +.+.++...++
T Consensus 28 ~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~r--e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~il 105 (249)
T PF06685_consen 28 QREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFR--EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRIL 105 (249)
T ss_pred CHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHh--hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHH
Confidence 45566666666665421 1221 12356666666652 2357788888887654 33444444444
Q ss_pred HHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccC---CCCC-CChHHHHHHHhhhhccCChHHHHHHHHHHh
Q 004394 434 KDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY---SQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAV 509 (756)
Q Consensus 434 ~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy---~~~i-~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~ 509 (756)
..+....+ ..+.+++.+.-.+.-+|.+++=.++.- +..- +.....++.+++.+.......+-..++..+
T Consensus 106 asv~~G~~-------~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~ 178 (249)
T PF06685_consen 106 ASVGDGDI-------EPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADI 178 (249)
T ss_pred HHHhCCCH-------HHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 44443222 234455433222333454443333322 2211 123445556666544433255666677666
Q ss_pred hHhhhcCChhhHHHHHHHHHhhhcC
Q 004394 510 MKCFFKRPPETQKVLGAALAAGLAD 534 (756)
Q Consensus 510 ~Kl~~~~p~e~~~~l~~vL~~~~~d 534 (756)
+-++ |.|.-+.+.++++...-|
T Consensus 179 ~dL~---~~EL~~~I~~~f~~~lVd 200 (249)
T PF06685_consen 179 CDLY---PEELLPEIRKAFEDGLVD 200 (249)
T ss_pred HhcC---HHHhHHHHHHHHHcCCCC
Confidence 6554 556666777777755444
No 275
>PHA03159 hypothetical protein; Provisional
Probab=24.08 E-value=83 Score=29.66 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=35.2
Q ss_pred HhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 124 LCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 124 Ls~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
|++|+...++|.+....+.+-..++..|| |+..+.+-|.+..+++
T Consensus 1 mssi~fq~~ie~il~~cq~~~~~~dsivr--aihsvi~qynkfe~lm 45 (160)
T PHA03159 1 MSSIKFQKIIENILKECQDCHHQQDSIVR--AIHSVIHQYNKFEALM 45 (160)
T ss_pred CCcccHHHHHHHHHHHHHhcchhhhHHHH--HHHHHHHHHhhHHHhC
Confidence 57888999999988888887777788887 6777777777655544
No 276
>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein. No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.82 E-value=1.2e+03 Score=27.95 Aligned_cols=98 Identities=15% Similarity=0.124 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHH
Q 004394 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS 453 (756)
Q Consensus 374 Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~ 453 (756)
+.+++..++...+++.++. +..+.+.+..-....-|...++.-|....+... .+..+.+.++++-..+......+.-
T Consensus 199 l~~~i~~~~~~~~d~~~~~-~~~l~k~~C~sehTYlyaQ~lL~~L~~~~~~~~--~~~rlsqELe~~A~~~~~~vt~i~~ 275 (584)
T PF04858_consen 199 LKDSISRFLAAGEDELQEA-IAELKKMCCHSEHTYLYAQALLHELSQESDGGS--AMRRLSQELEREAAKRGHDVTDITL 275 (584)
T ss_pred HHHHHHHHHcCCcHHHHHH-HHHHHHHhhcCCchHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHHHcCCCcHHHHH
Confidence 3444445555455555554 555555544433334467777777755432111 1344444444332111111100110
Q ss_pred hhhccCCchhHHHHHHhHhcc
Q 004394 454 ISSQNVQEPKAKAALIWMLGE 474 (756)
Q Consensus 454 l~~~~i~~p~ak~a~iWiLGE 474 (756)
.+...-.+|.+..++.-+++-
T Consensus 276 aL~~s~~~p~a~~ai~smLs~ 296 (584)
T PF04858_consen 276 ALNGSSSYPEACQAIASMLSS 296 (584)
T ss_pred HHhcCccCchHHHHHHHHHhc
Confidence 011223467777777777766
No 277
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.58 E-value=5e+02 Score=31.59 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHH
Q 004394 406 DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKA 466 (756)
Q Consensus 406 ~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~ 466 (756)
+++|+++++..+...-...=.+-+...+..++..|||.....+..+-.+ ..++...+.|.
T Consensus 583 ~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~~~YpD~~~~~l~~il~~-R~dls~~~~k~ 642 (667)
T KOG2286|consen 583 DVDTLISTISTLAELISLQDPDLIKLEVSTLLECYPDIPKDHLEAILKI-RGDLSRSEKKK 642 (667)
T ss_pred chhhhhhhhHHHHHHHhcCChHHHHHHHHHHHHHCCCCcHHHHHHHHHH-hcCCCHHHHHH
Confidence 4678887776665432221122233456888999999987554333222 24565555554
No 278
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=23.28 E-value=8.5e+02 Score=29.75 Aligned_cols=148 Identities=15% Similarity=0.151 Sum_probs=82.2
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHH
Q 004394 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGS 453 (756)
Q Consensus 374 Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~ 453 (756)
.+.||+.++.+.|.....++-..+-..-.. ....|.|..|++..-..++.-.-+++.. + +.|.-. . +..
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~y~~~t~s~~~~~il~~---~--~~P~~K-~----~~~ 73 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNS-DREPWLVNGLVDYYLSTNSQRALEILVG---V--QEPHDK-H----LFD 73 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhc-cchHHHHHHHHHHHhhcCcHHHHHHHHh---c--CCccHH-H----HHH
Confidence 456777888888887777777666543222 1125999999997655444333232221 1 334211 1 122
Q ss_pred hhhccCCchhHHHHHHhHhccCCCCCCC-h-----HHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhH------
Q 004394 454 ISSQNVQEPKAKAALIWMLGEYSQDMQD-A-----PYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQ------ 521 (756)
Q Consensus 454 l~~~~i~~p~ak~a~iWiLGEy~~~i~~-~-----~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~------ 521 (756)
.+.+.+..+.-+..++-++|.+...-+. . ..++..+++....+.+..|=...|++++-|.=+.|..+.
T Consensus 74 ~l~~~~~~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~L 153 (668)
T PF04388_consen 74 KLNDYFVKPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPDL 153 (668)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 2224455677777778888887654322 1 124555555554444366666677777777666664433
Q ss_pred -HHHHHHHHhhh
Q 004394 522 -KVLGAALAAGL 532 (756)
Q Consensus 522 -~~l~~vL~~~~ 532 (756)
.++.+++.|..
T Consensus 154 f~If~Rl~~W~~ 165 (668)
T PF04388_consen 154 FNIFGRLLSWER 165 (668)
T ss_pred HHHHHHHHHccc
Confidence 34445555543
No 279
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=23.27 E-value=1.3e+02 Score=29.11 Aligned_cols=28 Identities=21% Similarity=0.147 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~k 161 (756)
+.+...+..+|.++++-|+|.|.-|++.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4455555666666666666666666654
No 280
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=23.08 E-value=41 Score=22.67 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=12.6
Q ss_pred ccccccChhHHHHhhhcccc
Q 004394 722 NSKAILDPGTFQQKWRQLPI 741 (756)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~ 741 (756)
+..+.|.-+||+..|..|+.
T Consensus 5 ~~~~PLSQeTF~~LW~~l~~ 24 (25)
T PF08563_consen 5 SPELPLSQETFSDLWNLLPE 24 (25)
T ss_dssp S-----STCCHHHHHHTSST
T ss_pred CCCCCccHHHHHHHHHhccC
Confidence 34556788999999998863
No 281
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=22.47 E-value=3.2e+02 Score=29.67 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHhcCC--Cccc----hhhhh-h-hhccCCC-hhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCC
Q 004394 42 DSKRELFKKVISYMTIGI--DVSA----VFGEM-V-MCSATSD-IVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDE 112 (756)
Q Consensus 42 ~~kk~~lkKlI~~~~lG~--Dvs~----lF~~V-i-~l~~s~d-~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~ 112 (756)
....+.+.+.+..|..+. .+.. .|++- - -.+.+.+ |-..|+-|+.+.+.++.+.= -++.+.+|.-
T Consensus 27 l~~L~~i~~~l~~l~~~~~~~i~~~~W~~~Fd~~WPlv~~~~~~yW~~R~~Fl~lLn~~~p~~y----~~~~~~~DYf-- 100 (292)
T PF13929_consen 27 LDPLKSIVSTLSQLPQSTEKKINIENWKKFFDSHWPLVDPSETAYWSLRLKFLKLLNIADPQNY----SVRRFINDYF-- 100 (292)
T ss_pred hHHHHHHHHHHHhCccccccccCHHHHHHHHHhcCCCCCCCccchHHHHHHHHHHHhhcCcccC----CHHHHHHHHH--
Confidence 345666667777776654 3321 12222 2 2345566 89999999998888754321 2233333321
Q ss_pred ChHHHHHHHHHHhc-CChhhhHHHHHHHHHhhcCCCC----hHHH-HHHHHHHHHHhhh-cCC--cccCCCchHHHHHhH
Q 004394 113 DPMIRGLALRSLCS-LRVANLVEYLVGPLGLGLKDNN----SYVR-TVAVIGVLKLYHI-SAP--TCIDADFPPTLKHLM 183 (756)
Q Consensus 113 Np~iR~LALrtLs~-I~~~ei~e~l~~~v~~~L~d~~----pyVR-KkAalal~kl~~~-~p~--~~~~~~~i~~L~~lL 183 (756)
+.=++||+ +...+++..+--.+.+...+++ ..|+ -+-+.-++++|+. +|+ .+.+++.+..|.+-|
T Consensus 101 ------~lK~s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sM 174 (292)
T PF13929_consen 101 ------LLKKSMGCELTKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSM 174 (292)
T ss_pred ------HHHHHcCCCCcHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHHHHHHH
Confidence 22234444 4556777776666666666665 6784 4466678899984 776 666777777666555
Q ss_pred hcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHH
Q 004394 184 LNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCL 243 (756)
Q Consensus 184 L~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~ 243 (756)
..|.+. -+.+++|+...- +..+..-++++++..+++.|.+..+|-...
T Consensus 175 v~~~~~-----~l~alYEvV~~l-------~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 175 VIDENT-----KLNALYEVVDFL-------VSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred Hhcccc-----chhhHHHHHHHH-------HhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 565554 455666664311 111112244556777777777888886543
No 282
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=22.36 E-value=4e+02 Score=23.77 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=41.2
Q ss_pred HHhhhCCHHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhh
Q 004394 380 EYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (756)
Q Consensus 380 ~Yl~~~D~~~~~~~I~aIg~lA~k~~~-----~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~ 439 (756)
+|+...+ +=+.+++..+-..+.++.. ...|+.++-++++.+.+|+..| +.++..|+.+
T Consensus 10 ~f~~~~~-~~~~~~l~~~~~~~~~l~~~~~~~a~~Y~kvm~Ki~~kg~~yv~~E-~~RL~~iL~~ 72 (93)
T cd00238 10 EFVDASD-EERKELLEKVKEAVEKLKEAEAKYAKYYVKVMEKILEKGEDYVEKE-LARLERLLEK 72 (93)
T ss_pred HHhccch-hHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHcchhHHHHH-HHHHHHHHhc
Confidence 4554444 4466777777777666532 2468888888888888899998 5778888876
No 283
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.26 E-value=1.5e+03 Score=27.73 Aligned_cols=139 Identities=17% Similarity=0.177 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcccc----hHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcc
Q 004394 261 DIMNLLEDRLQHAN----GAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI 336 (756)
Q Consensus 261 ~il~~l~~~L~~~n----~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~l 336 (756)
++...+.+.++.+. ...+++=..++..-.+. ..+.+++.+.|.+=+++.+..+|=.+|+.+..+...-+..
T Consensus 349 ~~~p~l~pi~~~~~~~~~~l~i~e~mdlL~~Kt~~-----e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~ 423 (700)
T KOG2137|consen 349 KMLPALKPIYSASDPKQALLFILENMDLLKEKTPP-----EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVP 423 (700)
T ss_pred hhhHHHHHHhccCCcccchhhHHhhHHHHHhhCCh-----HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHH
Confidence 34555555554221 23344444444433321 1233445555555566667777777777776665543321
Q ss_pred cc-----cccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh---hhCCHHHHHHHHHHHHHHHhhcC
Q 004394 337 FA-----SDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA---ANVDIPIARESIRAVGKIALQQY 405 (756)
Q Consensus 337 f~-----~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl---~~~D~~~~~~~I~aIg~lA~k~~ 405 (756)
|. +-+... |......++|.-.|.-+-.++..--.-.+++|+.-.+ ...|+++.-..++....++.+.+
T Consensus 424 ~vk~~ilP~l~~l-~~~tt~~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 424 FVKQAILPRLKNL-AFKTTNLYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HHHHHHHHHhhcc-hhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc
Confidence 11 122333 4455556666666655555542222223444443332 33466666666666666665544
No 284
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.91 E-value=4.6e+02 Score=25.64 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=29.0
Q ss_pred cCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChh
Q 004394 93 VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVA 130 (756)
Q Consensus 93 ~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ 130 (756)
..|++.-+..+.++.+ .++.+|--|+|+||-||--
T Consensus 7 ~yP~LL~~L~~iLk~e---~s~~iR~E~lr~lGilGAL 41 (160)
T PF11865_consen 7 DYPELLDILLNILKTE---QSQSIRREALRVLGILGAL 41 (160)
T ss_pred HhHHHHHHHHHHHHhC---CCHHHHHHHHHHhhhcccc
Confidence 4688888888999988 3499999999999988643
No 285
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=21.78 E-value=5.4e+02 Score=30.31 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHH
Q 004394 358 KLEMLTAVANESNTYEIVTELCE 380 (756)
Q Consensus 358 kLdIL~~L~n~~Nv~~Iv~EL~~ 380 (756)
++.=|..=+|.+|+.+|+.||..
T Consensus 167 sInglInkvn~sNi~~ii~eLfq 189 (739)
T KOG2140|consen 167 SINGLINKVNASNIQEIIRELFQ 189 (739)
T ss_pred HhHHHHhhhhHHHHHHHHHHHHH
Confidence 34445555788999999999974
No 286
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=21.70 E-value=9.3e+02 Score=25.13 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=84.8
Q ss_pred hcccchHHHHHHHHHHHhhcc-------ccchhHH--HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc-cc--
Q 004394 270 LQHANGAVVLSTIKVFLHLTL-------SMTDVHQ--QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IF-- 337 (756)
Q Consensus 270 L~~~n~aVvleaik~ii~l~~-------~~~~~~~--~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~-lf-- 337 (756)
|+..+++|+-.+|.+...+.+ ..+...+ ..+..++.-++.++.+..+.+|-.+++-+..++...-. .-
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 445566776666665443321 1111111 22345667788888888888999999999988765321 11
Q ss_pred ------ccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhC--CHHHHHHHHHHHHHHHhhcCCh-h
Q 004394 338 ------ASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV--DIPIARESIRAVGKIALQQYDV-N 408 (756)
Q Consensus 338 ------~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~--D~~~~~~~I~aIg~lA~k~~~~-~ 408 (756)
..++..=.+..|.| .++..+|+- =...+++.|+.++.+. +..+...++.+++.+|.+=|.. .
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp-~l~~~~Le~--------Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~ 152 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHP-LLNPQQLEA--------EANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMS 152 (239)
T ss_dssp ---GGGTTS--GGGS-TT-S-SS-HHHHHH--------HHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHH
T ss_pred ccccccccCCCHHHcCCCCC-cCCHHHHHH--------HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHH
Confidence 11111112334554 566767763 2346888899988765 4677788899999999887765 4
Q ss_pred HHHHHHHHHhhhc
Q 004394 409 AIVDRLLQFLEME 421 (756)
Q Consensus 409 ~~vd~Ll~LL~~~ 421 (756)
.++.+++.+-...
T Consensus 153 ~Il~~ll~~~~~~ 165 (239)
T PF11935_consen 153 RILPALLSFNPNL 165 (239)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHhcCccc
Confidence 5778888776543
No 287
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]
Probab=21.41 E-value=1.5e+03 Score=27.50 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHH-------HHHHhhcCCCcchHHHHHHHHHHHHhhCCc
Q 004394 263 MNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKA-------PLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 263 l~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~-------~L~~LLss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
|+-+...=+.-+-|++=..+.++.+-..-..+-.++++.+... .=-.|=.|+.|+.+|+||..+-+++.+.-+
T Consensus 1 MEgIL~fd~dLdiallDkVVttfyqg~g~~q~qAq~iLtkFq~~PdaWtkad~IL~~S~~pqskyiALs~LdklIttkWk 80 (1053)
T COG5101 1 MEGILEFDKDLDIALLDKVVTTFYQGDGRKQEQAQRILTKFQELPDAWTKADYILNNSKLPQSKYIALSLLDKLITTKWK 80 (1053)
T ss_pred CcchhhcccccCHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhCchHHHHHHHHHhcccCcchhhhHHHHHHHHHHhhhh
Q ss_pred ccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHH------------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 004394 336 IFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTY------------EIVTELCEYAANVDIPIARESIRAVGKIALQ 403 (756)
Q Consensus 336 lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~------------~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k 403 (756)
++.+..+ ..||.--..++...+..+.+. .+|+-|..--+..=++|..++|..=. +...
T Consensus 81 llp~~~r---------~GiRnyvv~~vI~~s~dd~v~~~qk~~lnkldltLvqIlKqeWP~nWP~FIpeli~~S~-~s~~ 150 (1053)
T COG5101 81 LLPEGMR---------QGIRNYVVQLVIEKSQDDKVRDKQKYVLNKLDLTLVQILKQEWPRNWPTFIPELINVSQ-ISME 150 (1053)
T ss_pred hCCcHHH---------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhHHHHHHHHhcccccchhhHHHHhhcc-chHH
Q ss_pred cCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch--HHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCC
Q 004394 404 QYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH--DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD 481 (756)
Q Consensus 404 ~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~--~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~ 481 (756)
....+ -.++++|+...=..+.|.+..++...-++.-.-+ .+...+..++ +.-.++....|.+=-+--|.+.++-
T Consensus 151 vCeNn---mivLklLsEEvFdfSaeqmTq~k~~~LkNqm~~EF~qIF~lc~qiL-E~~~~~SLi~ATLesllrfl~wiPl 226 (1053)
T COG5101 151 VCENN---MIVLKLLSEEVFDFSAEQMTQVKKRLLKNQMKIEFPQIFGLCKQIL-EYSRDESLIEATLESLLRFLEWIPL 226 (1053)
T ss_pred HHhcc---HHHHHHhHHHHHhccHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHhhCch
Q ss_pred ----hHHHHHHHhhhhccCChHHHHHHHHHHhhHh
Q 004394 482 ----APYILESLTENWEEEPSAEVRLHLLTAVMKC 512 (756)
Q Consensus 482 ----~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl 512 (756)
-..+++.+.++|... +.+|...|.++..+
T Consensus 227 ~yIfeTnIieLv~~~f~s~--pd~r~~tl~CLtEi 259 (1053)
T COG5101 227 DYIFETNIIELVLEHFNSM--PDTRVATLSCLTEI 259 (1053)
T ss_pred hHHHHHHHHHHHHHHhccC--CchhHHHHHHHHHH
No 288
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=21.30 E-value=9.3e+02 Score=24.96 Aligned_cols=121 Identities=19% Similarity=0.077 Sum_probs=73.2
Q ss_pred HHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh--hHHHHHHHHHh-------hcC--CCCh
Q 004394 81 KMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN--LVEYLVGPLGL-------GLK--DNNS 149 (756)
Q Consensus 81 kL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e--i~e~l~~~v~~-------~L~--d~~p 149 (756)
.+.|.-.....+.+ ...-+++.++..=...+....++.++|-++.+-..+ ..+.+-+.+.. ... +...
T Consensus 20 ~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f~~L~~~L~~~~~r~~~~~~~~~~~~ 98 (234)
T PF12530_consen 20 PLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHFPFLQPLLLLLILRIPSSFSSKDEFW 98 (234)
T ss_pred HHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhcccccCCCcchH
Confidence 33444444443334 444566666665555555566777777777762211 11222222222 222 2233
Q ss_pred HHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh-cCCChhHHHHHHHHHHHHHhh
Q 004394 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 150 yVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL-~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
.+.-..+.++.-+....|+.. .+++..+..+ + .+.++.+.+.|+-++..+++.
T Consensus 99 ~~~i~~a~s~~~ic~~~p~~g--~~ll~~ls~~-L~~~~~~~~~alale~l~~Lc~~ 152 (234)
T PF12530_consen 99 ECLISIAASIRDICCSRPDHG--VDLLPLLSGC-LNQSCDEVAQALALEALAPLCEA 152 (234)
T ss_pred HHHHHHHHHHHHHHHhChhhH--HHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHH
Confidence 455555778888899999944 6788888887 6 688888999999999998853
No 289
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=21.29 E-value=6.3e+02 Score=23.04 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHcC-CCChHHHHHHHHHHhcCCh-----hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc
Q 004394 98 ALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS 166 (756)
Q Consensus 98 ~lL~iNtl~KDL~-s~Np~iR~LALrtLs~I~~-----~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~ 166 (756)
..-+..++.+-+. +.++..|+-|.--++.+.. +++++.++..+.+....... .+.|.+|+..+++..
T Consensus 4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHcc
Confidence 3455678888888 7788888888777777643 66777777777776665555 788999999999755
No 290
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=20.05 E-value=2.2e+03 Score=28.81 Aligned_cols=97 Identities=14% Similarity=0.200 Sum_probs=49.4
Q ss_pred CcchHHHHHHHHHHHHhhC-----CcccccccceeeecCCC---CHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCC
Q 004394 315 SPEQSYAVLSHLHILVMRA-----PFIFASDYKHFYCQYNE---PSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVD 386 (756)
Q Consensus 315 ~~nirYvaL~~l~~L~~~~-----p~lf~~~~~~f~c~~~d---p~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D 386 (756)
+||-..+.++.|...++.. ..++.+-++.+..+..+ -+.|...-|+..|. ++..+..+.++...|+ |
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqyc---d 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYC---D 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhc---c
Confidence 6787777777776665542 23444444444333322 14455555555444 5666777777777775 4
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 004394 387 IPIARESIRAVGKIALQQYDVNAIVDRLLQ 416 (756)
Q Consensus 387 ~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~ 416 (756)
...+-.....|=...+||.+...+++.+++
T Consensus 1529 ~~~V~~~L~~iy~k~ek~~~A~ell~~m~K 1558 (1710)
T KOG1070|consen 1529 AYTVHLKLLGIYEKSEKNDEADELLRLMLK 1558 (1710)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 333333333343444444443334444443
Done!