Query 004394
Match_columns 756
No_of_seqs 297 out of 1372
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 23:50:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004394.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004394hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_B AP-2 complex subunit be 100.0 2E-93 6.9E-98 834.2 55.2 576 12-605 5-585 (591)
2 2vgl_A Adaptor protein complex 100.0 2.4E-87 8.1E-92 786.8 46.1 538 19-584 34-617 (621)
3 1w63_A Adapter-related protein 100.0 2.8E-82 9.7E-87 743.9 43.6 526 19-570 33-594 (618)
4 3tjz_B Coatomer subunit gamma; 100.0 1.3E-53 4.5E-58 464.6 14.1 323 16-368 22-354 (355)
5 1b3u_A Protein (protein phosph 99.7 1.1E-15 3.7E-20 175.1 30.6 475 62-550 86-585 (588)
6 4fdd_A Transportin-1; heat rep 99.6 2.2E-12 7.5E-17 156.0 41.5 529 20-555 86-788 (852)
7 4fdd_A Transportin-1; heat rep 99.6 6.6E-13 2.2E-17 160.5 30.2 401 69-516 19-473 (852)
8 1b3u_A Protein (protein phosph 99.6 1E-12 3.4E-17 150.4 29.7 506 66-594 13-550 (588)
9 2vgl_B AP-2 complex subunit be 99.5 2.7E-13 9.2E-18 157.9 21.5 418 103-544 16-449 (591)
10 1u6g_C TIP120 protein, CAND1; 99.5 2.1E-11 7.2E-16 153.0 33.8 475 63-550 6-596 (1230)
11 2bpt_A Importin beta-1 subunit 99.5 5.4E-10 1.9E-14 133.9 43.2 519 21-548 92-707 (861)
12 2jdq_A Importin alpha-1 subuni 99.4 4.6E-12 1.6E-16 140.3 21.7 331 100-438 20-390 (450)
13 2bpt_A Importin beta-1 subunit 99.4 2E-10 6.9E-15 137.6 37.3 370 131-548 91-525 (861)
14 1qgr_A Protein (importin beta 99.4 1.5E-09 5.3E-14 130.2 44.5 379 21-404 87-539 (876)
15 1wa5_B Importin alpha subunit; 99.4 2.7E-11 9.1E-16 138.4 27.4 341 62-440 86-459 (530)
16 1wa5_B Importin alpha subunit; 99.4 3.4E-11 1.2E-15 137.6 27.5 381 18-439 85-511 (530)
17 2z6g_A B-catenin; FULL-length, 99.4 1.3E-10 4.3E-15 139.7 33.1 470 65-551 117-662 (780)
18 2jdq_A Importin alpha-1 subuni 99.4 3E-10 1E-14 125.6 33.6 339 22-403 22-391 (450)
19 4b8j_A Importin subunit alpha- 99.4 6.6E-11 2.3E-15 134.9 28.8 340 65-441 76-446 (528)
20 1w63_A Adapter-related protein 99.4 7.7E-12 2.6E-16 146.4 19.9 407 103-534 37-471 (618)
21 2z6g_A B-catenin; FULL-length, 99.4 1.7E-10 5.9E-15 138.6 31.1 446 102-559 117-629 (780)
22 1jdh_A Beta-catenin; beta-cate 99.4 6.9E-10 2.4E-14 125.5 34.0 368 95-474 12-423 (529)
23 2z6h_A Catenin beta-1, beta-ca 99.4 7.3E-10 2.5E-14 129.9 34.5 440 97-552 11-527 (644)
24 4b8j_A Importin subunit alpha- 99.3 7.3E-10 2.5E-14 126.2 32.3 297 21-332 75-401 (528)
25 1u6g_C TIP120 protein, CAND1; 99.3 3.8E-09 1.3E-13 132.6 39.3 463 39-516 18-600 (1230)
26 1qgr_A Protein (importin beta 99.3 2.6E-09 9E-14 128.1 35.9 471 69-550 223-869 (876)
27 1oyz_A Hypothetical protein YI 99.3 6E-11 2.1E-15 123.9 18.5 254 101-434 24-278 (280)
28 1ibr_B P95, importin beta-1 su 99.2 2.9E-09 1E-13 117.7 27.1 190 130-368 85-289 (462)
29 3ul1_B Importin subunit alpha- 99.2 4.9E-09 1.7E-13 119.6 27.9 296 136-439 101-431 (510)
30 1jdh_A Beta-catenin; beta-cate 99.2 5.8E-09 2E-13 117.9 27.4 420 129-560 11-497 (529)
31 3now_A UNC-45 protein, SD10334 99.1 3.1E-08 1.1E-12 118.2 33.1 394 71-476 255-736 (810)
32 4hxt_A De novo protein OR329; 99.1 6.8E-09 2.3E-13 105.2 22.8 227 102-336 4-246 (252)
33 3ltm_A Alpha-REP4; protein eng 99.1 1.3E-09 4.5E-14 108.7 17.2 185 102-333 21-205 (211)
34 2vgl_A Adaptor protein complex 99.1 2E-08 6.8E-13 117.6 29.6 387 78-495 58-489 (621)
35 2z6h_A Catenin beta-1, beta-ca 99.1 6.6E-08 2.2E-12 113.3 32.9 399 65-477 16-486 (644)
36 3tpo_A Importin subunit alpha- 99.1 1E-08 3.6E-13 117.3 25.4 295 136-438 120-449 (529)
37 3ltj_A Alpharep-4; protein eng 99.1 4.3E-09 1.5E-13 104.1 18.8 183 100-329 14-196 (201)
38 1oyz_A Hypothetical protein YI 99.1 2.4E-09 8.3E-14 111.6 17.0 252 137-472 25-277 (280)
39 3ul1_B Importin subunit alpha- 99.0 8.3E-08 2.9E-12 109.4 30.0 329 65-401 59-429 (510)
40 3tpo_A Importin subunit alpha- 99.0 2.2E-07 7.5E-12 106.3 30.5 330 64-401 77-448 (529)
41 3now_A UNC-45 protein, SD10334 99.0 2.6E-08 8.9E-13 118.9 22.2 398 39-441 259-740 (810)
42 4hxt_A De novo protein OR329; 98.9 1.4E-07 4.7E-12 95.4 22.1 232 137-405 4-244 (252)
43 3ltm_A Alpha-REP4; protein eng 98.9 7.1E-08 2.4E-12 96.1 19.4 185 64-291 20-204 (211)
44 3ltj_A Alpharep-4; protein eng 98.9 1.1E-07 3.6E-12 94.0 19.4 183 64-289 15-197 (201)
45 1ibr_B P95, importin beta-1 su 98.8 1.3E-06 4.3E-11 96.4 28.7 310 21-335 87-441 (462)
46 4db8_A Armadillo-repeat protei 98.8 5.3E-08 1.8E-12 99.3 16.0 220 62-289 11-250 (252)
47 4db8_A Armadillo-repeat protei 98.8 7.1E-08 2.4E-12 98.3 16.2 220 102-329 14-249 (252)
48 4db6_A Armadillo repeat protei 98.6 8.7E-07 3E-11 87.7 16.2 186 58-251 7-207 (210)
49 4db6_A Armadillo repeat protei 98.6 1.4E-06 4.8E-11 86.2 16.9 189 134-330 11-208 (210)
50 1xm9_A Plakophilin 1; armadill 98.5 1.3E-05 4.6E-10 89.9 24.5 332 137-478 4-450 (457)
51 3tjz_B Coatomer subunit gamma; 98.4 8E-06 2.7E-10 88.8 19.3 184 232-423 147-338 (355)
52 3b2a_A TON_1937, putative unch 98.4 1.6E-05 5.4E-10 80.4 19.4 192 175-380 34-231 (265)
53 1wa5_C Importin alpha RE-expor 98.4 0.00048 1.7E-08 84.3 36.2 347 133-514 83-525 (960)
54 2qk2_A LP04448P; mini spindles 98.3 1.3E-05 4.5E-10 81.7 17.2 197 135-342 15-217 (242)
55 3l6x_A Catenin delta-1; cateni 98.3 0.00014 4.8E-09 84.0 27.2 186 136-330 49-269 (584)
56 1xm9_A Plakophilin 1; armadill 98.3 0.00046 1.6E-08 77.3 30.2 337 22-369 4-451 (457)
57 3l6x_A Catenin delta-1; cateni 98.3 0.00028 9.6E-09 81.5 28.6 355 14-377 42-486 (584)
58 3opb_A SWI5-dependent HO expre 98.2 0.0033 1.1E-07 74.3 35.8 423 111-550 181-726 (778)
59 1te4_A Conserved protein MTH18 98.2 4.8E-07 1.6E-11 83.8 2.7 84 103-199 45-128 (131)
60 1te4_A Conserved protein MTH18 98.2 5.7E-07 2E-11 83.2 2.7 91 101-205 13-103 (131)
61 4ady_A RPN2, 26S proteasome re 98.2 0.00063 2.2E-08 81.9 29.1 282 102-419 394-698 (963)
62 3nmw_A APC variant protein; AR 98.1 6.2E-05 2.1E-09 81.9 18.7 219 112-336 96-339 (354)
63 2qk2_A LP04448P; mini spindles 98.1 7.9E-05 2.7E-09 75.8 16.9 182 59-289 10-204 (242)
64 3nmz_A APC variant protein; pr 98.1 0.00013 4.5E-09 82.0 20.0 286 149-444 96-456 (458)
65 2db0_A 253AA long hypothetical 98.1 0.0001 3.5E-09 71.7 15.9 213 173-402 31-246 (253)
66 2qk1_A Protein STU2; STU2P, XM 98.1 5E-05 1.7E-09 78.5 14.8 209 140-362 21-245 (249)
67 3nmz_A APC variant protein; pr 98.0 9.1E-05 3.1E-09 83.4 17.4 218 112-335 212-454 (458)
68 2x19_B Importin-13; nuclear tr 98.0 0.00071 2.4E-08 82.4 26.8 205 74-288 36-266 (963)
69 2x1g_F Cadmus; transport prote 98.0 0.0044 1.5E-07 75.6 32.3 441 72-529 16-587 (971)
70 3opb_A SWI5-dependent HO expre 97.8 0.0018 6.2E-08 76.5 23.9 322 114-439 308-729 (778)
71 1xqr_A HSPBP1 protein; armadil 97.8 0.0002 6.8E-09 76.0 14.2 154 137-334 83-241 (296)
72 1xqr_A HSPBP1 protein; armadil 97.8 0.00039 1.3E-08 73.7 16.4 187 18-206 23-240 (296)
73 1wa5_C Importin alpha RE-expor 97.7 0.0042 1.4E-07 76.0 26.7 261 78-344 376-682 (960)
74 2qk1_A Protein STU2; STU2P, XM 97.6 0.0016 5.5E-08 67.0 17.0 137 70-207 23-178 (249)
75 4ady_A RPN2, 26S proteasome re 97.4 0.028 9.7E-07 67.8 26.4 209 50-284 494-713 (963)
76 3b2a_A TON_1937, putative unch 97.3 0.0016 5.4E-08 66.0 11.8 179 134-332 32-219 (265)
77 2db0_A 253AA long hypothetical 97.2 0.0096 3.3E-07 58.1 15.8 184 134-335 31-214 (253)
78 2x19_B Importin-13; nuclear tr 97.1 0.84 2.9E-05 55.2 38.6 138 101-252 446-598 (963)
79 3m1i_C Exportin-1; heat repeat 97.1 0.72 2.5E-05 56.7 35.0 87 460-548 465-565 (1049)
80 3nmw_A APC variant protein; AR 97.0 0.02 6.8E-07 62.1 18.2 211 76-294 97-338 (354)
81 4ffb_C Protein STU2; tubulin f 96.9 0.019 6.6E-07 59.4 16.1 188 140-332 14-213 (278)
82 3a6p_A Exportin-5; exportin-5, 96.9 0.99 3.4E-05 56.5 34.2 93 458-550 542-653 (1204)
83 2x1g_F Cadmus; transport prote 96.9 0.18 6.1E-06 61.3 27.0 83 119-203 443-534 (971)
84 4ffb_C Protein STU2; tubulin f 96.8 0.013 4.5E-07 60.7 14.0 174 70-290 16-212 (278)
85 3u0r_A Apoptosis inhibitor 5; 96.6 0.63 2.1E-05 51.8 25.9 133 65-204 31-163 (507)
86 3ibv_A Exportin-T; karyopherin 96.5 2.5 8.7E-05 51.7 37.1 151 134-289 88-259 (980)
87 4hat_C Exportin-1; heat repeat 96.4 0.23 7.9E-06 61.1 23.7 107 96-205 447-570 (1023)
88 3m1i_C Exportin-1; heat repeat 96.4 1.4 4.8E-05 54.1 31.0 68 137-206 196-265 (1049)
89 3grl_A General vesicular trans 96.4 0.49 1.7E-05 54.7 24.7 296 146-444 33-400 (651)
90 3grl_A General vesicular trans 96.2 0.18 6.3E-06 58.2 19.7 254 71-335 30-346 (651)
91 3tt9_A Plakophilin-2; cell adh 95.8 0.13 4.5E-06 52.3 14.3 167 137-312 10-204 (233)
92 3gs3_A Symplekin, LD45768P; he 95.7 0.29 1E-05 50.5 16.7 125 41-203 29-172 (257)
93 3ibv_A Exportin-T; karyopherin 95.4 1.5 5.1E-05 53.7 24.4 123 80-206 416-568 (980)
94 4hat_C Exportin-1; heat repeat 95.4 7.5 0.00026 47.7 31.9 176 119-334 435-621 (1023)
95 3o2t_A Symplekin; heat repeat, 95.3 0.76 2.6E-05 50.1 19.1 186 116-310 41-272 (386)
96 3gs3_A Symplekin, LD45768P; he 95.2 2.5 8.4E-05 43.5 21.7 173 112-290 28-243 (257)
97 2of3_A ZYG-9; multifunctional 94.9 0.64 2.2E-05 48.1 16.3 185 13-207 27-239 (266)
98 1ho8_A Vacuolar ATP synthase s 94.8 3.9 0.00013 45.6 22.9 333 174-515 77-477 (480)
99 3o2t_A Symplekin; heat repeat, 94.5 0.83 2.8E-05 49.8 16.5 207 19-269 24-272 (386)
100 3u0r_A Apoptosis inhibitor 5; 93.7 11 0.00037 42.0 26.7 62 139-204 33-94 (507)
101 3l9t_A Putative uncharacterize 93.1 2 7E-05 43.5 15.3 137 105-261 76-215 (240)
102 1lsh_A Lipovitellin (LV-1N, LV 92.4 0.85 2.9E-05 56.3 13.9 121 77-202 409-541 (1056)
103 3a6p_A Exportin-5; exportin-5, 92.3 29 0.001 43.3 33.7 66 483-550 532-611 (1204)
104 3gjx_A Exportin-1; transport, 91.9 6.6 0.00023 48.4 20.7 147 100-253 477-644 (1073)
105 3l9t_A Putative uncharacterize 91.5 0.89 3.1E-05 46.1 10.3 191 9-214 22-217 (240)
106 3tt9_A Plakophilin-2; cell adh 90.6 3.2 0.00011 42.0 13.6 109 175-291 9-125 (233)
107 2of3_A ZYG-9; multifunctional 90.5 3.5 0.00012 42.6 14.0 134 66-204 49-196 (266)
108 2iw3_A Elongation factor 3A; a 89.5 8 0.00027 47.1 18.1 218 101-332 96-325 (986)
109 1lsh_A Lipovitellin (LV-1N, LV 89.2 23 0.00079 43.5 22.4 138 366-515 433-577 (1056)
110 2iw3_A Elongation factor 3A; a 88.8 8.5 0.00029 46.9 17.6 254 101-368 55-328 (986)
111 4gmo_A Putative uncharacterize 85.2 4.9 0.00017 47.0 12.5 21 274-294 198-218 (684)
112 4gmo_A Putative uncharacterize 84.9 4.6 0.00016 47.2 12.2 84 464-548 555-661 (684)
113 1lrv_A LRV, leucine-rich repea 80.1 1.3 4.6E-05 45.1 4.4 68 105-199 127-194 (244)
114 3oc3_A Helicase MOT1, MOT1; re 79.5 8.6 0.00029 43.8 10.7 227 70-326 181-431 (800)
115 1lrv_A LRV, leucine-rich repea 78.0 1.5 5E-05 44.8 3.9 88 70-197 57-144 (244)
116 3dad_A FH1/FH2 domain-containi 76.4 47 0.0016 35.3 15.0 72 262-334 203-289 (339)
117 3oc3_A Helicase MOT1, MOT1; re 73.2 55 0.0019 37.5 14.9 132 70-203 270-403 (800)
118 3jxy_A Alkylpurine DNA glycosy 71.4 45 0.0015 33.2 13.0 90 138-249 134-223 (232)
119 1t06_A Hypothetical protein; s 67.6 6.7 0.00023 39.5 5.8 71 109-181 117-195 (235)
120 3fga_B Serine/threonine-protei 66.4 1.5E+02 0.0052 32.2 16.9 172 375-547 131-317 (403)
121 3dad_A FH1/FH2 domain-containi 66.3 44 0.0015 35.5 11.9 60 143-205 126-190 (339)
122 3ldz_A STAM-1, signal transduc 66.0 20 0.00067 33.1 8.3 77 83-163 25-113 (140)
123 2b6c_A Hypothetical protein EF 62.1 19 0.00066 35.6 8.0 129 69-208 61-192 (220)
124 1t06_A Hypothetical protein; s 61.9 54 0.0018 32.7 11.3 69 139-208 112-184 (235)
125 1x5b_A Signal transducing adap 61.6 28 0.00095 33.0 8.6 75 86-164 38-125 (163)
126 2b6c_A Hypothetical protein EF 58.6 8.9 0.00031 38.1 4.8 76 92-170 119-194 (220)
127 3jxy_A Alkylpurine DNA glycosy 57.2 6 0.0002 39.7 3.2 62 109-170 140-201 (232)
128 3g2s_A C-terminal fragment of 57.1 42 0.0014 31.3 8.8 86 83-168 31-130 (149)
129 1mhq_A ADP-ribosylation factor 56.2 48 0.0016 30.8 9.1 82 84-165 22-117 (148)
130 2jak_A Serine/threonine-protei 55.4 2E+02 0.0068 31.1 15.0 172 375-548 176-363 (392)
131 2npp_B PP2A, B subunit, serine 55.4 2.4E+02 0.0084 31.0 17.2 172 374-547 163-350 (449)
132 1juq_A ADP-ribosylation factor 55.3 52 0.0018 31.3 9.4 81 83-167 33-131 (171)
133 1dvp_A HRS, hepatocyte growth 55.3 56 0.0019 32.2 10.0 74 85-161 27-112 (220)
134 3g2s_A C-terminal fragment of 54.4 75 0.0026 29.5 10.1 85 305-412 51-136 (149)
135 1vsy_5 Proteasome activator BL 54.3 14 0.00049 45.1 6.4 101 65-166 762-875 (997)
136 1x5b_A Signal transducing adap 53.4 45 0.0015 31.5 8.5 50 156-208 36-85 (163)
137 3zyq_A Hepatocyte growth facto 50.3 68 0.0023 31.9 9.7 77 84-163 29-117 (226)
138 3ldz_A STAM-1, signal transduc 47.3 64 0.0022 29.6 8.3 50 155-207 25-74 (140)
139 1ho8_A Vacuolar ATP synthase s 45.1 42 0.0014 37.4 7.7 71 95-165 394-477 (480)
140 3gjx_A Exportin-1; transport, 43.0 5.5E+02 0.019 31.5 36.4 86 462-548 493-591 (1073)
141 1juq_A ADP-ribosylation factor 41.4 93 0.0032 29.5 8.7 51 154-207 32-82 (171)
142 1mhq_A ADP-ribosylation factor 38.9 89 0.003 28.9 7.9 51 155-208 21-71 (148)
143 1elk_A Target of MYB1; superhe 35.3 1.5E+02 0.0052 27.5 9.0 78 84-164 37-130 (157)
144 3zyq_A Hepatocyte growth facto 33.6 1.7E+02 0.0059 28.9 9.6 74 306-406 49-122 (226)
145 1vsy_5 Proteasome activator BL 31.0 1.4E+02 0.0048 36.4 9.9 117 88-205 831-967 (997)
146 1vdy_A Hypothetical protein (R 29.9 1.1E+02 0.0039 28.1 6.9 69 302-370 49-133 (140)
147 1elk_A Target of MYB1; superhe 28.7 2.1E+02 0.0073 26.5 8.8 51 155-208 36-87 (157)
148 1w9c_A CRM1 protein, exportin 28.1 5.1E+02 0.017 27.1 12.4 88 458-547 88-191 (321)
149 1h2v_C 80 kDa nuclear CAP bind 23.9 2.2E+02 0.0074 33.7 9.5 74 360-433 14-89 (771)
150 1of5_B MTR2, YKL186C, mRNA tra 22.4 34 0.0011 32.9 1.8 27 717-743 50-77 (184)
151 3ebb_A Phospholipase A2-activa 20.5 7E+02 0.024 25.6 17.4 60 103-162 150-218 (304)
No 1
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=100.00 E-value=2e-93 Score=834.23 Aligned_cols=576 Identities=36% Similarity=0.620 Sum_probs=531.5
Q ss_pred CCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHcc
Q 004394 12 SPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYA 91 (756)
Q Consensus 12 ~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~ 91 (756)
+.|...+|||++|||++|++ ++.++|+++++|+||+|++|+|++++|++|+++++++|+++||+||+|+..++
T Consensus 5 ~~f~~~~~~e~~~i~~~L~~-------~~~~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~ 77 (591)
T 2vgl_B 5 KYFTTNKKGEIFELKAELNN-------EKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYA 77 (591)
T ss_dssp CTTCCCSSSHHHHHHHHTTS-------SCHHHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred hhcccccCChHHHHHHHHcC-------CCHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence 46777899999999999997 45689999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc
Q 004394 92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI 171 (756)
Q Consensus 92 ~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~ 171 (756)
+.+||++++++|+|+||++|+||.+|++||++||+++.+++++++.+.|++++.|++|||||+|++|+.++|+.+|+.+.
T Consensus 78 ~~~~e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 78 KSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp HHSHHHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred ccCchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999885
Q ss_pred CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 172 ~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y 251 (756)
+.+|++.+.++ ++|+|++|+.+|+.+|.+|+..+++.. ...+.+..+.+|++.+.+++||+|+++|++++.|
T Consensus 158 ~~~~~~~l~~l-L~d~d~~V~~~A~~aL~~i~~~~~~~~-------~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l 229 (591)
T 2vgl_B 158 DQGFLDSLRDL-IADSNPMVVANAVAALSEISESHPNSN-------LLDLNPQNINKLLTALNECTEWGQIFILDCLSNY 229 (591)
T ss_dssp HHHHHHHHHHT-TSCSCHHHHHHHHHHHHHHTTSCCSCC-------SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS
T ss_pred cccHHHHHHHH-hCCCChhHHHHHHHHHHHHHhhCCCcc-------chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh
Confidence 55799999997 699999999999999999998776420 0112345688999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHH
Q 004394 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS---MTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHI 328 (756)
Q Consensus 252 ~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~---~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~ 328 (756)
+|.++++..++++.+.++++|.|++|+++|+++++++... .++..+.++.++.++|+.+++ +++|+||+||++|..
T Consensus 230 ~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~ 308 (591)
T 2vgl_B 230 NPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINL 308 (591)
T ss_dssp CCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998742 234445566788888887765 789999999999999
Q ss_pred HHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC-h
Q 004394 329 LVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD-V 407 (756)
Q Consensus 329 L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~-~ 407 (756)
+++.+|+.+.+|++.|+|+.+||.+||++|+++|+.|+|++|++.|++||.+|+.+.|.+|+++++++||.||.+|+. .
T Consensus 309 i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~ 388 (591)
T 2vgl_B 309 IVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA 388 (591)
T ss_dssp HHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974 5
Q ss_pred hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHH
Q 004394 408 NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILE 487 (756)
Q Consensus 408 ~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~ 487 (756)
.||+++|+++++..++++..|++.++++|++++|+.++.++..+.+.+ +++.+|+++++++|++||||+.+++++++++
T Consensus 389 ~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l-~~~~~~~~~~~~~wilGey~~~~~~~~~~l~ 467 (591)
T 2vgl_B 389 ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESIIATLCENL-DSLDEPDARAAMIWIVGEYAERIDNADELLE 467 (591)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTT-TTCCSHHHHHHHHHHHHTTCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHH-HhccCHHHHHHHHHHHHcccccccCHHHHHH
Confidence 899999999999999999999999999999999999888777676654 5678899999999999999999999999999
Q ss_pred HHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcC-CChHHHhHHHHHHHHhcCCHHHHHhhcCCCCC
Q 004394 488 SLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD-FHQDVHDRALFYHRLLQYNVSVAERVVNPPKQ 566 (756)
Q Consensus 488 ~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d-~d~dVrdRA~~Y~rLL~~~~e~a~~vv~~~~p 566 (756)
.++++|.+++ +.||.++|||++|+|.++|++.++.++++|+.++.| .|+||||||++||+||+.+++.++++|+++||
T Consensus 468 ~l~~~~~~~~-~~vr~~~l~a~~Kl~~~~p~~~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~~~~~~~~~v~~~~p 546 (591)
T 2vgl_B 468 SFLEGFHDES-TQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKP 546 (591)
T ss_dssp HHSTTCSSSC-HHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTTCTTHHHHHHTSCCC
T ss_pred HHHHhhccCC-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCcCHHHHHHHHcCCCC
Confidence 9999999998 999999999999999999988888999999999876 69999999999999999988999999999999
Q ss_pred CCcccccCCChHHHHHHHhhcCcchhhccCCCCccccCC
Q 004394 567 AVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKD 605 (756)
Q Consensus 567 ~i~~~~~~~~~~~~~~l~~~~~tls~vy~kp~~~f~~~~ 605 (756)
+++...+..+++++++|+.+|||+|+||+||++.|+++.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~~ 585 (591)
T 2vgl_B 547 LISEETDLIEPTLLDELICHIGSLASVYHKPPNAFVEGS 585 (591)
T ss_dssp CCCSCSSCCCHHHHHHHHTTTTSSHHHHTSCGGGCC---
T ss_pred CCCCCccccCHHHHHHHHHHhCcchhhhcCCHHHHcCCc
Confidence 999888889999999999999999999999999999764
No 2
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=100.00 E-value=2.4e-87 Score=786.81 Aligned_cols=538 Identities=20% Similarity=0.256 Sum_probs=459.2
Q ss_pred cchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHH
Q 004394 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (756)
Q Consensus 19 k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~ 98 (756)
++|++|||++|++. .+.+..+|+++++|+||+|++|+|++++|++|+++++|+|+++||+||||++.|++.++|++
T Consensus 34 ~~E~~~ir~~~~~~----~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~ 109 (621)
T 2vgl_A 34 NKELANIRSKFKGD----KALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELI 109 (621)
T ss_dssp HHHHHHHHHHHHSS----SCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHH
Confidence 47899999999851 11356789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc--CCCChHHHHHHHHHHHHHhhhcCCcccCCCch
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL--KDNNSYVRTVAVIGVLKLYHISAPTCIDADFP 176 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L--~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i 176 (756)
+|+||+|+||++|+||++||+|||+||+|+++++++++.++|++++ .|++|||||+|++|++|+|+.+|+.+..++|.
T Consensus 110 ~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~ 189 (621)
T 2vgl_A 110 RLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCCCSCH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCchhHH
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999555999
Q ss_pred HHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh--ccC-----------ChhHHHH
Q 004394 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI--KEF-----------SEWAQCL 243 (756)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l--~~~-----------~~W~Qi~ 243 (756)
+.+.++ ++|+|++|+.+|+.++.+|+..+|+... .++ +..+..|.+.+ +++ +||+|++
T Consensus 190 ~~l~~l-L~d~d~~V~~~a~~~l~~i~~~~~~~~~-------~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~ 260 (621)
T 2vgl_A 190 SRVVHL-LNDQHLGVVTAATSLITTLAQKNPEEFK-------TSV-SLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVK 260 (621)
T ss_dssp HHHHHH-TTCSCHHHHHHHHHHHHHHHHHCHHHHT-------THH-HHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHH
T ss_pred HHHHHH-hCCCCccHHHHHHHHHHHHHHhChHHHH-------HHH-HHHHHHHHHHHhCCCCCccchhhcCCCCchHHHH
Confidence 999997 6999999999999999999987764211 111 11222222222 223 7999999
Q ss_pred HHHHHHhhCCC-ChhHHHHHHHHHHHHh------------cccch--HHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Q 004394 244 VLELVAKYVPL-DSNEIFDIMNLLEDRL------------QHANG--AVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLL 308 (756)
Q Consensus 244 IL~lL~~y~p~-d~~e~~~il~~l~~~L------------~~~n~--aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~ 308 (756)
+|++|+.|++. +++....+.+.+...+ +|.|+ ||+|||+++++++.+. + .++..+.+.|+
T Consensus 261 il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~----~~~~~~~~~L~ 335 (621)
T 2vgl_A 261 LLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-P----NLLVRACNQLG 335 (621)
T ss_dssp HHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-H----HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCc-H----HHHHHHHHHHH
Confidence 99999999986 4555555555554433 45565 9999999999999753 2 23456677899
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCC--cccccccceee-ecC-CCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Q 004394 309 TLVSSGSPEQSYAVLSHLHILVMRAP--FIFASDYKHFY-CQY-NEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAAN 384 (756)
Q Consensus 309 ~LLss~~~nirYvaL~~l~~L~~~~p--~lf~~~~~~f~-c~~-~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~ 384 (756)
+||+++++|+||++|++|..+++.+| ..++.|...|+ |+. ++|.+||++|||+|+.|+|++|++.|++||.+|+.+
T Consensus 336 ~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~ 415 (621)
T 2vgl_A 336 QFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLET 415 (621)
T ss_dssp HHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhhHHHHHHHHHHHHHh
Confidence 99988999999999999999999987 67888887664 666 899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchh
Q 004394 385 VDIPIARESIRAVGKIALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPK 463 (756)
Q Consensus 385 ~D~~~~~~~I~aIg~lA~k~~-~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ 463 (756)
.|.+|++++|++||.||+||+ +..||+++|++++..+|+|+.+|+|.++++++.++|+.+++++..+.+.+ .+|+
T Consensus 416 ~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l----~~~~ 491 (621)
T 2vgl_A 416 ADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEAL----QAPA 491 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHH----TSSS
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHH----cCcc
Confidence 999999999999999999997 56899999999999999999999999999999999999988766555443 3343
Q ss_pred HH----HHHHhHhccCCCCCCC-----hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhc-
Q 004394 464 AK----AALIWMLGEYSQDMQD-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLA- 533 (756)
Q Consensus 464 ak----~a~iWiLGEy~~~i~~-----~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~- 533 (756)
++ .+++|++||||+.+++ +.++++.+.++|..++ +.||+++|||++|+|.+.| +.++.++.+|+.+++
T Consensus 492 ~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~-~~v~~~~Lta~~Kl~~~~p-~~~~~i~~~l~~~~~~ 569 (621)
T 2vgl_A 492 CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCS-VPTRALLLSTYIKFVNLFP-EVKATIQDVLRSDSQL 569 (621)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHCG-GGHHHHHHHHSSHHHH
T ss_pred chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHCh-HHHHHHHHHHHHHhcC
Confidence 33 4456999999998865 3589999999999999 9999999999999999987 577889999999998
Q ss_pred -CCChHHHhHHHHHHHHhcCCHHHHHhhcCCCCCCCcccccCCChHHHHHHH
Q 004394 534 -DFHQDVHDRALFYHRLLQYNVSVAERVVNPPKQAVSVFADTQSSEIKDRIF 584 (756)
Q Consensus 534 -d~d~dVrdRA~~Y~rLL~~~~e~a~~vv~~~~p~i~~~~~~~~~~~~~~l~ 584 (756)
|.|+||||||++||+||+.+++.++++++++||+++ + .++.++++|.
T Consensus 570 ~~~d~evrdRA~~y~~Ll~~~~~~~~~~vl~~~P~~~---~-~~~~ll~~l~ 617 (621)
T 2vgl_A 570 KNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFP---E-RESSILAKLK 617 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHSSCSTTTTTTSSSCCCCC---C-C---------
T ss_pred CCCCHHHHHHHHHHHHHHccCHHHHHHHHhhcCCCCC---C-cchHHHHHHH
Confidence 899999999999999999887788999999999953 3 3556666654
No 3
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.8e-82 Score=743.93 Aligned_cols=526 Identities=17% Similarity=0.185 Sum_probs=456.5
Q ss_pred cchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHH
Q 004394 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA 98 (756)
Q Consensus 19 k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~ 98 (756)
++|++|||++|++. +..+|+++++|+||+|++|+|++++|++|+++++++|+++||+||||++.|++++||++
T Consensus 33 ~~e~~~ir~~l~~~-------~~~~k~~~l~kli~~~~~G~d~~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~ 105 (618)
T 1w63_A 33 QKECAAIRSSFREE-------DNTYRCRNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH 105 (618)
T ss_dssp HHHHHHHHHHHTTT-------CTTTHHHHHHHHHHHHHTTCCCGGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHhhCC-------CHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH
Confidence 68899999999872 34578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHH
Q 004394 99 LLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPT 178 (756)
Q Consensus 99 lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~ 178 (756)
+|+||+|+||++|+||.+|++|||+||+|+.+++++++.+.|.++|.|++|||||+|++|++++|+.+|+.+ ++|.+.
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--~~~~~~ 183 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--EMFLPA 183 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--GGGGGG
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 689999
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh------------ccCChhHHHHHHH
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI------------KEFSEWAQCLVLE 246 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l------------~~~~~W~Qi~IL~ 246 (756)
+.++ ++|+|++|+.+|+.+|.+|+..+|+. . ..+.-+. +.+.+++..+ ...+||+|+++++
T Consensus 184 l~~l-L~D~d~~V~~~Al~~L~~i~~~~~~~----~-~~~~~~v-~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 184 TKNL-LNEKNHGVLHTSVVLLTEMCERSPDM----L-AHFRKLV-PQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp TTTS-TTCCCHHHHHHHHHHHHHHCCSHHHH----H-HHHHTTH-HHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHH-hCCCCHhHHHHHHHHHHHHHHhChHH----H-HHHHHHH-HHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 9997 79999999999999999998765431 0 0110111 1222333322 1359999999999
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHh------cccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHH
Q 004394 247 LVAKYVPLDSNEIFDIMNLLEDRL------QHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSY 320 (756)
Q Consensus 247 lL~~y~p~d~~e~~~il~~l~~~L------~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirY 320 (756)
+|+.|++.+++....+++.+...+ +|.+.+|+++|+++++++... +. +...+.++|++|++++++|+||
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~~a~~~L~~~L~~~d~~vr~ 331 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRVLAINILGRFLLNNDKNIRY 331 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHHHHHHHHHHHHTCSSTTTHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHHHHHHHHHHHHhCCCCchHH
Confidence 999999988876666666666554 356789999999999998653 22 2345678899999999999999
Q ss_pred HHHHHHHHHHhhCCccccccc-ceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHH
Q 004394 321 AVLSHLHILVMRAPFIFASDY-KHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGK 399 (756)
Q Consensus 321 vaL~~l~~L~~~~p~lf~~~~-~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~ 399 (756)
+||++|..+++.+|.+|++|. ..|+|++|+|.+||++|+++|+.|++++|++.|++||.+|+.+.|.+|+++++++||+
T Consensus 332 ~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~ 411 (618)
T 1w63_A 332 VALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFL 411 (618)
T ss_dssp HHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999999998 5678999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-ChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccC-CchhHHHHHHhHhccCCC
Q 004394 400 IALQQY-DVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNV-QEPKAKAALIWMLGEYSQ 477 (756)
Q Consensus 400 lA~k~~-~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i-~~p~ak~a~iWiLGEy~~ 477 (756)
||.+|+ +..||+++++++++..++++.+|+|.+++++++++|+.+++++..+.+++.+.+ .++.++ +++|++||||+
T Consensus 412 la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~-~~~wilGEy~~ 490 (618)
T 1w63_A 412 AAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQ-VAAWCIGEYGD 490 (618)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHH-HHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHH-HHHHHHhhhHH
Confidence 999995 679999999999999999999999999999999999999888877777665433 445444 68999999998
Q ss_pred CCCC---------------hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhH
Q 004394 478 DMQD---------------APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDR 542 (756)
Q Consensus 478 ~i~~---------------~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdR 542 (756)
.+.+ ..++++.+++.| .++ +.||+++|||++|+|.++|+ .++.+..+|+.+..|.|+|||||
T Consensus 491 ~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~-~~vr~~~lta~~Kl~~~~~~-~~~~l~~~L~~~~~~~d~evrdR 567 (618)
T 1w63_A 491 LLVSGQCEEEEPIQVTEDEVLDILESVLISN-MST-SVTRGYALTAIMKLSTRFTC-TVNRIKKVVSIYGSSIDVELQQR 567 (618)
T ss_dssp HHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCC-HHHHHHHHHHHHHHHTTCSS-CHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HhcccccccccccCCCHHHHHHHHHHHHhcc-CCC-HHHHHHHHHHHHHHHHhCcc-hHHHHHHHHHHhcCCCCHHHHHH
Confidence 6643 345666777776 566 99999999999999999985 47889999999998999999999
Q ss_pred HHHHHHHhcCCHHHHHhhcCCCCCCCcc
Q 004394 543 ALFYHRLLQYNVSVAERVVNPPKQAVSV 570 (756)
Q Consensus 543 A~~Y~rLL~~~~e~a~~vv~~~~p~i~~ 570 (756)
|++||+||+.+++ ++++++++||+++.
T Consensus 568 A~~y~~ll~~~~~-~~~~vl~~~P~~~~ 594 (618)
T 1w63_A 568 AVEYNALFKKYDH-MRSALLERMPVMEK 594 (618)
T ss_dssp HHHHHHHHHTTTT-HHHHHHSCCCCCCC
T ss_pred HHHHHHHHcCcHH-HHHHHhhcCCCCCc
Confidence 9999999988655 56788899999754
No 4
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=100.00 E-value=1.3e-53 Score=464.62 Aligned_cols=323 Identities=15% Similarity=0.239 Sum_probs=229.2
Q ss_pred CCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----ccchhhhhhhhccCCChhhHHHHHHHHHHc
Q 004394 16 PSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----VSAVFGEMVMCSATSDIVLKKMCYLYVGNY 90 (756)
Q Consensus 16 ~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~D-----vs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~ 90 (756)
..|.+.++|.| .|++. +-+..+++++++|+||+|++|++ ++++|++|+|+++|+|+++|||||||++.|
T Consensus 22 ~~k~~v~qe~r-~fn~~-----~~~~~kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~ 95 (355)
T 3tjz_B 22 LEKSAVLQEAR-VFNET-----PINPRKCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEM 95 (355)
T ss_dssp CCHHHHHHHGG-GTTSS-----SCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHH-HhcCC-----CCcHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 56667777754 55542 23456678899999999999998 688999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 91 AKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 91 ~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
++..+| ++|++|+|+||++|+||++||+|||+||+|+.++|++++.++++++|.|++|||||+|++|++|+|..+|+.+
T Consensus 96 ~~~~~e-~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v 174 (355)
T 3tjz_B 96 SCIAED-VIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV 174 (355)
T ss_dssp TTTSSC-GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH
T ss_pred CCCHHH-HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 998555 6899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccC---ChhHHHHHHHH
Q 004394 171 IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF---SEWAQCLVLEL 247 (756)
Q Consensus 171 ~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~---~~W~Qi~IL~l 247 (756)
++|++.+.++ ++|+||+|+.+|+.+|++|.+.++ ..+.+|+..+.+. +||+||.+|++
T Consensus 175 --~~~~~~l~~l-l~d~n~~V~~~Al~lL~ei~~~d~----------------~a~~kLv~~l~~~~l~~~~~q~~llr~ 235 (355)
T 3tjz_B 175 --KRWVNEAQEA-ASSDNIMVQYHALGLLYHVRKNDR----------------LAVSKMISKFTRHGLKSPFAYCMMIRV 235 (355)
T ss_dssp --HTTHHHHHHH-TTCSSHHHHHHHHHHHHHHHTTCH----------------HHHHHHHHHHHSSCCSCHHHHHHHHHH
T ss_pred --HHHHHHHHHH-hcCCCccHHHHHHHHHHHHHhhch----------------HHHHHHHHHHhcCCCcChHHHHHHHHH
Confidence 6799999997 799999999999999999986442 2456677766654 79999999999
Q ss_pred HHhhCCCC-hhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 004394 248 VAKYVPLD-SNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHL 326 (756)
Q Consensus 248 L~~y~p~d-~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l 326 (756)
++.|.+.+ +++..++++.+.++|+|.|++|+|||+++|+.+..... ..+..++++|.+||+++++|+||+||++|
T Consensus 236 l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~----~~~~~a~~~L~~fLss~d~niryvaLr~L 311 (355)
T 3tjz_B 236 ASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA----KELAPAVSVLQLFCSSPKAALRYAAVRTL 311 (355)
T ss_dssp HTCC-----------------CCCCCSSHHHHHHHHHHHTC---------------CCCTHHHHHHSSSSSSHHHHHHCC
T ss_pred HHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 99999998 78889999999999999999999999999999875322 23355677899999999999999999999
Q ss_pred HHHHhhCCcccccccc-eeeecCCCCHHHHHHHHHHHHHhcCC
Q 004394 327 HILVMRAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANE 368 (756)
Q Consensus 327 ~~L~~~~p~lf~~~~~-~f~c~~~dp~~IK~~kLdIL~~L~n~ 368 (756)
.++++++|.+++.|-. ..-|..|.+.+|+..++..|.+-.+|
T Consensus 312 ~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllktg~e 354 (355)
T 3tjz_B 312 NKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKTGSE 354 (355)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhccCC
Confidence 9999999999998764 45688888899999999999887665
No 5
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=1.1e-15 Score=175.10 Aligned_cols=475 Identities=13% Similarity=0.052 Sum_probs=281.9
Q ss_pred cchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHH--HHHHHHHHHcCCCChHHHHHHHHHHhcCC---hhhhHHHH
Q 004394 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL--LTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLVEYL 136 (756)
Q Consensus 62 s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l--L~iNtl~KDL~s~Np~iR~LALrtLs~I~---~~ei~e~l 136 (756)
..+++.+..++..++...|+.+--.+..+....++-.+ .....+.+=..++++.+|..|.+.++.+. ...+.+.+
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~~~~l 165 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAEL 165 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44566556666677777777777777777665543221 22333433345667777777666665542 23455666
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHH
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~ 216 (756)
.+.+.+++.|+++.||+.|+.++.++....+.....+.+++.+..+ ++|.++.|...|+.+|..+...-+...
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~------ 238 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNL-ASDEQDSVRLLAVEACVNIAQLLPQED------ 238 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHH-HTCSCHHHHTTHHHHHHHHHHHSCHHH------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHhCCHHH------
Confidence 6667777777777777777777777765544321124556666665 567777777777777766665443210
Q ss_pred HHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC--ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc-
Q 004394 217 REALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL--DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT- 293 (756)
Q Consensus 217 ~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~--d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~- 293 (756)
. ...++..+...+.+.+...+....+.|..+... .+.....+++.+...++..++.|...|+.++..+.....
T Consensus 239 ~----~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~ 314 (588)
T 1b3u_A 239 L----EALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA 314 (588)
T ss_dssp H----HHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred H----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh
Confidence 0 011122233333444444555555555544321 111223466666666666666666666666554432211
Q ss_pred hh-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc-ccccccc-eee-ecCCCCHHHHHHHHHHHHHhcCCC
Q 004394 294 DV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK-HFY-CQYNEPSYVKKLKLEMLTAVANES 369 (756)
Q Consensus 294 ~~-~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~-lf~~~~~-~f~-c~~~dp~~IK~~kLdIL~~L~n~~ 369 (756)
+. ....+..+.+.+..++++.++.+|..+...+..+....+. .+.+++. .|. +..+++..||...++-|..++..-
T Consensus 315 ~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 394 (588)
T 1b3u_A 315 DCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI 394 (588)
T ss_dssp TTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhc
Confidence 10 0123344555566667666777777777776666554332 1111221 111 223444567776666655554332
Q ss_pred C----HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCC
Q 004394 370 N----TYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQ 442 (756)
Q Consensus 370 N----v~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~---~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~ 442 (756)
. ...++..|..++.+.+..++..++..++.++..++.. ...+..+++++......|...++..+..++...+.
T Consensus 395 ~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 395 GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc
Confidence 2 3567777778888888888999999999998876431 34667777877776667778888888888766543
Q ss_pred cc--hHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCC---hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCC
Q 004394 443 WS--HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP 517 (756)
Q Consensus 443 ~~--~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~---~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p 517 (756)
.. ..++..+..+. .-.++..+.+++|.+|+.+..+.. .+.++..+.+.+.+.. +.||...+.++.+++....
T Consensus 475 ~~~~~~llp~l~~~~--~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~ 551 (588)
T 1b3u_A 475 EWAHATIIPKVLAMS--GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPV-ANVRFNVAKSLQKIGPILD 551 (588)
T ss_dssp HHHHHHTHHHHHHTT--TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSC-HHHHHHHHHHHHHHGGGSC
T ss_pred hhHHHHHHHHHHHHh--hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCC-chHHHHHHHHHHHHHHHhc
Confidence 11 11222222222 223467788899999988765432 2355666777666777 9999999999999986654
Q ss_pred hhh-HHHHHHHHHhhhcCCChHHHhHHHHHHHHh
Q 004394 518 PET-QKVLGAALAAGLADFHQDVHDRALFYHRLL 550 (756)
Q Consensus 518 ~e~-~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL 550 (756)
.+. .+.+...|.....|.|++||+.|..-..-+
T Consensus 552 ~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 552 NSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 322 234455566667889999999998766544
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.61 E-value=2.2e-12 Score=155.95 Aligned_cols=529 Identities=13% Similarity=0.069 Sum_probs=315.9
Q ss_pred chHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC---CCccchhhhhhhhccCCChhhHHHHHHHHHHccccCCh
Q 004394 20 GEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG---IDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD 96 (756)
Q Consensus 20 ~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG---~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~e 96 (756)
.+...+|..+-+...+. +. .-|..+..+++.+... .....+++.+++++.+++...|..+...+..+.+..++
T Consensus 86 ~~~~~ik~~ll~~l~~~---~~-~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~ 161 (852)
T 4fdd_A 86 GVTDFIKSECLNNIGDS---SP-LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE 161 (852)
T ss_dssp HHHHHHHHHHHTTTTCS---SH-HHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCC---CH-HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34566777776654432 22 3333444555554421 24455788888899999988888888777776665554
Q ss_pred H---------HHHHHHHHHHHcCCCChHHHHHHHHHHhcCCh------hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Q 004394 97 L---------ALLTINFLQRDCKDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLK 161 (756)
Q Consensus 97 l---------~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~------~ei~e~l~~~v~~~L~d~~pyVRKkAalal~k 161 (756)
. .--++..|.+-++|+++.+|..|+++++.+.. ....+.+++.+.+.+.|+++.||+.|+.|+.+
T Consensus 162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~ 241 (852)
T 4fdd_A 162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVM 241 (852)
T ss_dssp HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3 23467778888899999999999999998752 12345677888889999999999999999999
Q ss_pred HhhhcCCcccC--CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc-----ch-hHHHHHHH---------------
Q 004394 162 LYHISAPTCID--ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS-----TS-EEASRERE--------------- 218 (756)
Q Consensus 162 l~~~~p~~~~~--~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~-----~~-~~~~~~~~--------------- 218 (756)
+...+|+.+.. +++++.+..+ +.|.|+.|...|+..+..+++.... +. ....+...
T Consensus 242 l~~~~~~~~~~~l~~l~~~l~~~-~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~ 320 (852)
T 4fdd_A 242 LLEVRMDRLLPHMHNIVEYMLQR-TQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG 320 (852)
T ss_dssp HHHHCHHHHGGGHHHHHHHHHHH-HTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred HHHhCHHHHHHHHHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence 99988876521 2344555565 5899999999999888877642100 00 00000000
Q ss_pred ---------------------------------hhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChh----HHHH
Q 004394 219 ---------------------------------ALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN----EIFD 261 (756)
Q Consensus 219 ---------------------------------~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~----e~~~ 261 (756)
..+-+.++..+...+.+.++..+...+..|..+.....+ ....
T Consensus 321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~ 400 (852)
T 4fdd_A 321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE 400 (852)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHH
T ss_pred CcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 000000111111122222322334444444444322221 1244
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccch-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccc
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~-~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~ 340 (756)
++..+...+++.++.|...|+.++..+...... .....+..+.+.|...+.++++.+|..+...+..++...+..+.++
T Consensus 401 ~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 401 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 666777777888888888888888766532110 0112234566777888877889999999999998887644333333
Q ss_pred cceee-----ecC----------------------------------------------CCCHHHHHHHHHHHHHhcCC-
Q 004394 341 YKHFY-----CQY----------------------------------------------NEPSYVKKLKLEMLTAVANE- 368 (756)
Q Consensus 341 ~~~f~-----c~~----------------------------------------------~dp~~IK~~kLdIL~~L~n~- 368 (756)
+..+. +.. +++..++ ..++.+..++..
T Consensus 481 l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 481 LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATAL 559 (852)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHH
Confidence 32110 111 1111111 223333333221
Q ss_pred -CC----HHHHHHHHH----HHh-------------hhCCHHHHHHHHHHHHHHHhhcC-Chh------HHHHHHHHHhh
Q 004394 369 -SN----TYEIVTELC----EYA-------------ANVDIPIARESIRAVGKIALQQY-DVN------AIVDRLLQFLE 419 (756)
Q Consensus 369 -~N----v~~Iv~EL~----~Yl-------------~~~D~~~~~~~I~aIg~lA~k~~-~~~------~~vd~Ll~LL~ 419 (756)
.. +..|+..+. +++ ...|.+++..++..||.++.... +.. .++..+++.+.
T Consensus 560 g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~ 639 (852)
T 4fdd_A 560 QSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQ 639 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTT
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhC
Confidence 01 122222111 111 12367889999999999998774 222 35677788787
Q ss_pred hcCchhhHHHHHHHHHHHhhCCCcchHHHH-HHHHhhhc--cCCchhHHHHHHhHhccCCCCCC-----ChHHHHHHHhh
Q 004394 420 MEKDYVTAEALVLVKDLLRKYPQWSHDCIA-VVGSISSQ--NVQEPKAKAALIWMLGEYSQDMQ-----DAPYILESLTE 491 (756)
Q Consensus 420 ~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~-~l~~l~~~--~i~~p~ak~a~iWiLGEy~~~i~-----~~~~iL~~l~~ 491 (756)
.....|.+++...+.++.+.+++.....+. ++.-+. + ...++.++..++|.+|+++..+. -...++..+++
T Consensus 640 ~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~-~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 640 DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILG-TNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH-HTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 766778899999999999887754332222 222222 2 23457888999999999865543 24567777776
Q ss_pred hhccC-ChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHH----hhhcCCChHHHhHHHHHH-HHhcCCHH
Q 004394 492 NWEEE-PSAEVRLHLLTAVMKCFFKRPPETQKVLGAALA----AGLADFHQDVHDRALFYH-RLLQYNVS 555 (756)
Q Consensus 492 ~f~~e-~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~----~~~~d~d~dVrdRA~~Y~-rLL~~~~e 555 (756)
.+... ....++.....++.|+..++|+...+.+.+++. ....-.|.+.++-|+... .|+..+|+
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhChH
Confidence 65432 226789999999999999987644333444333 322335666777776544 45555654
No 7
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.56 E-value=6.6e-13 Score=160.53 Aligned_cols=401 Identities=14% Similarity=0.123 Sum_probs=276.0
Q ss_pred hhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC-------hhhhHHHHHHHHH
Q 004394 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR-------VANLVEYLVGPLG 141 (756)
Q Consensus 69 i~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~-------~~ei~e~l~~~v~ 141 (756)
++...++|-..+|-+.-.+..+ +.+|+....... +..++.+.++.+|.+|.-.+-+.- .++.-+.+-..+.
T Consensus 19 l~~~~s~d~~~r~~Ae~~L~~~-~~~p~~~~~l~~-il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll 96 (852)
T 4fdd_A 19 LKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIF-VLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECL 96 (852)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHH-TTSHHHHHHHHH-HHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHH
T ss_pred HHHHhCcCHHHHHHHHHHHHHH-HhCCCHHHHHHH-HHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 3444577888999999999876 456775433333 334557788999988876665431 2445677788888
Q ss_pred hhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhc
Q 004394 142 LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALI 221 (756)
Q Consensus 142 ~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll 221 (756)
++|.|+++.||++|+.++..+.+.++..- -+++++.|.++ +.+.|+.+.-.|+.+|..+++..+. .+
T Consensus 97 ~~l~~~~~~vr~~~a~~i~~ia~~~~~~~-wp~ll~~L~~~-l~~~~~~~r~~al~~L~~i~~~~~~-----------~~ 163 (852)
T 4fdd_A 97 NNIGDSSPLIRATVGILITTIASKGELQN-WPDLLPKLCSL-LDSEDYNTCEGAFGALQKICEDSAE-----------IL 163 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHHHHHHTTTTT-CTTHHHHHHHH-HSCSSHHHHHHHHHHHHHHHHHHTT-----------HH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhcCccc-cHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhHH-----------Hh
Confidence 88999999999999999999999863321 25677777776 5888999999999888888753221 00
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH
Q 004394 222 SKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE 301 (756)
Q Consensus 222 ~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~ 301 (756)
.+ .+. ......++..+...+++.+..|..+|++++..+....+......+.
T Consensus 164 ~~--------------------------~~~---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~ 214 (852)
T 4fdd_A 164 DS--------------------------DVL---DRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHID 214 (852)
T ss_dssp HH--------------------------CSS---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHH
T ss_pred ch--------------------------hhh---cchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 00 000 0113345566666677788899999999887665432221111233
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceee-----ecCCCCHHHHHHHHHHHHHhcCCC-------
Q 004394 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFY-----CQYNEPSYVKKLKLEMLTAVANES------- 369 (756)
Q Consensus 302 rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~-----c~~~dp~~IK~~kLdIL~~L~n~~------- 369 (756)
.+.+.|..+++++++++|..+++.+..++..+|..+.+|+..++ +..+++..+|..+++.+..+|...
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 45567777888889999999999999999999998888875432 346677899999999999999754
Q ss_pred -CHHHHHHHHHHHh-----------hh-----------CCHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHhhhcCch
Q 004394 370 -NTYEIVTELCEYA-----------AN-----------VDIPIARESIRAVGKIALQQYDV--NAIVDRLLQFLEMEKDY 424 (756)
Q Consensus 370 -Nv~~Iv~EL~~Yl-----------~~-----------~D~~~~~~~I~aIg~lA~k~~~~--~~~vd~Ll~LL~~~~~~ 424 (756)
.+..++..|+..+ .+ .+..+++.+..+++.++...++. ...+..+.+++......
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~ 374 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWV 374 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHH
Confidence 3446677776665 22 11135788999999999887642 34566666677666667
Q ss_pred hhHHHHHHHHHHHhhCCCcc----hHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCC------CChHHHHHHHhhhhc
Q 004394 425 VTAEALVLVKDLLRKYPQWS----HDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDM------QDAPYILESLTENWE 494 (756)
Q Consensus 425 v~~E~i~~i~~Il~~~p~~~----~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i------~~~~~iL~~l~~~f~ 494 (756)
+...++..+..|....++.. ...+..+..++.+ .++.++.+++|.+|+|+... .....++..+++...
T Consensus 375 ~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~ 452 (852)
T 4fdd_A 375 VKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD--KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452 (852)
T ss_dssp HHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 77777778877775443211 2223333333322 35788999999999998743 224567777887776
Q ss_pred cCChHHHHHHHHHHhhHhhhcC
Q 004394 495 EEPSAEVRLHLLTAVMKCFFKR 516 (756)
Q Consensus 495 ~e~~~~Vq~~lLtA~~Kl~~~~ 516 (756)
+.+ +.||.....|+..+.-..
T Consensus 453 d~~-~~vr~~a~~aL~~l~~~~ 473 (852)
T 4fdd_A 453 DSN-KRVQEAACSAFATLEEEA 473 (852)
T ss_dssp CSS-HHHHHHHHHHHHHHHHHH
T ss_pred CCC-HHHHHHHHHHHHHHHHHh
Confidence 666 899999999988876443
No 8
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.56 E-value=1e-12 Score=150.36 Aligned_cols=506 Identities=11% Similarity=0.074 Sum_probs=318.7
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHcccc-CChHHH-HHHHHHHHHcCCCChHHHHHHHHHHhcCC----hhhhHHHHHHH
Q 004394 66 GEMVMCSATSDIVLKKMCYLYVGNYAKV-NPDLAL-LTINFLQRDCKDEDPMIRGLALRSLCSLR----VANLVEYLVGP 139 (756)
Q Consensus 66 ~~Vi~l~~s~d~~~KkL~YLyl~~~~~~-~~el~l-L~iNtl~KDL~s~Np~iR~LALrtLs~I~----~~ei~e~l~~~ 139 (756)
..++..+.++|...|+.+-..+...+.. .++-.. -++..+ ++..|+++.+|..|.+.++.+. .++..+.+.+.
T Consensus 13 ~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L-~~~~d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~ 91 (588)
T 1b3u_A 13 AVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFL-TDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPP 91 (588)
T ss_dssp HHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHH-HHTCCCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHH
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3345556666666666555544443321 111111 122333 3455889999999999999875 35567778888
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHh
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREA 219 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ 219 (756)
+..++.|+++.||+.|+.++.++....|.....+.+.+.+..+ ..++++.+...|+.++..+...-+.. .
T Consensus 92 L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l-~~~~~~~~R~~a~~~l~~~~~~~~~~----~----- 161 (588)
T 1b3u_A 92 LESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRL-AGGDWFTSRTSACGLFSVCYPRVSSA----V----- 161 (588)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHH-HTCSSHHHHHHHGGGHHHHTTTSCHH----H-----
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHHhcCHH----H-----
Confidence 8888899999999999999999998765432223456777776 57888999988888888876543210 0
Q ss_pred hccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChh--HHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHH
Q 004394 220 LISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSN--EIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQ 297 (756)
Q Consensus 220 ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~--e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~ 297 (756)
.+.++..+...+.+.++..+...++.|..+...-.. ....+++.+...+++.+..|...|+.++..+....+. .
T Consensus 162 --~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~ 237 (588)
T 1b3u_A 162 --KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--E 237 (588)
T ss_dssp --HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--H
T ss_pred --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--H
Confidence 012333444455778888888888888877543222 2345777788888888889988888888776532221 1
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC-ccccccc-ceee-ecCCCCHHHHHHHHHHHHHhcCCC-----
Q 004394 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP-FIFASDY-KHFY-CQYNEPSYVKKLKLEMLTAVANES----- 369 (756)
Q Consensus 298 ~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p-~lf~~~~-~~f~-c~~~dp~~IK~~kLdIL~~L~n~~----- 369 (756)
...+.+.+.+..++++.+..+|+.+.+.+..+....+ ..+..++ ..|. ...|++..+|..+..-|-.++..-
T Consensus 238 ~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 238 DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhh
Confidence 2234455667778888888999999999998887532 2222222 1121 234566789998888877776432
Q ss_pred ---CHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh---hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCc
Q 004394 370 ---NTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV---NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQW 443 (756)
Q Consensus 370 ---Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~---~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~ 443 (756)
....++.-+..++.+.+...++.++.+++.++..+++. ...+..++.++....+.|...++..+..+....+..
T Consensus 318 ~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~ 397 (588)
T 1b3u_A 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR 397 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH
T ss_pred hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH
Confidence 24567777778888888999999999999988766432 234566777777665667777776666666544321
Q ss_pred --chHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCC---hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh
Q 004394 444 --SHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD---APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP 518 (756)
Q Consensus 444 --~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~---~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~ 518 (756)
....+..+..++.+ .++..+.++++.+|.++..... .++++..+...+.+.. ..||...+.++.++.-..++
T Consensus 398 ~~~~~~lp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 398 QLSQSLLPAIVELAED--AKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHV-YAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSS-HHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHhCc
Confidence 12223333333322 4567788888888876543322 3567777777666666 89999999999988766543
Q ss_pred h--hHHHHHHHHHhhhcCCChHHHhHHHHHHHHhcCC--HH-HHHhhcCCCCCCCcccccCCChHHHHHHHhhcCcchhh
Q 004394 519 E--TQKVLGAALAAGLADFHQDVHDRALFYHRLLQYN--VS-VAERVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVV 593 (756)
Q Consensus 519 e--~~~~l~~vL~~~~~d~d~dVrdRA~~Y~rLL~~~--~e-~a~~vv~~~~p~i~~~~~~~~~~~~~~l~~~~~tls~v 593 (756)
+ ...++..+. ....+.+..+|.-|.....-+... .+ ....++ |.+.....+.+++++...+.-++.+...
T Consensus 475 ~~~~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~----~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 549 (588)
T 1b3u_A 475 EWAHATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHML----PTVLRMAGDPVANVRFNVAKSLQKIGPI 549 (588)
T ss_dssp HHHHHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH----HHHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence 2 123333333 334577888988887665544321 11 111111 2222223344567777766666666543
Q ss_pred c
Q 004394 594 Y 594 (756)
Q Consensus 594 y 594 (756)
+
T Consensus 550 ~ 550 (588)
T 1b3u_A 550 L 550 (588)
T ss_dssp S
T ss_pred h
Confidence 3
No 9
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.53 E-value=2.7e-13 Score=157.87 Aligned_cols=418 Identities=12% Similarity=0.084 Sum_probs=255.1
Q ss_pred HHHHHHcCCCChHHHHHHHHHHhcC--ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 103 NFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 103 Ntl~KDL~s~Np~iR~LALrtLs~I--~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
+-+++.++++|+..|.-|++-+-.+ ...++ ..+.+.+.+++.++++.+||.+.+++..+.+.+|+.. .-.++.+.
T Consensus 16 ~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~-~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~--~l~~n~l~ 92 (591)
T 2vgl_B 16 FELKAELNNEKKEKRKEAVKKVIAAMTVGKDV-SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA--IMAVNSFV 92 (591)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC-GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH--HTTHHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH--HHHHHHHH
Confidence 5677777777776665554443321 11122 2234456667777777788888777777777666654 22455666
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH
Q 004394 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~ 260 (756)
+- ++|+|+.|++.|+.+|..+.. ++ +....+..+.+.+.+.+|..+-+....+.++...+++...
T Consensus 93 kd-L~~~n~~ir~~AL~~L~~i~~--~~------------~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~ 157 (591)
T 2vgl_B 93 KD-CEDPNPLIRALAVRTMGCIRV--DK------------ITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE 157 (591)
T ss_dssp GG-SSSSSHHHHHHHHHHHHTCCS--GG------------GHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HH-cCCCCHHHHHHHHHHHHcCCh--HH------------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc
Confidence 65 577788777777777776642 11 0112334455566677777777777766665544444333
Q ss_pred --HHHHHHHHHhcccchHHHHHHHHHHHhhccccchh-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccc
Q 004394 261 --DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV-HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF 337 (756)
Q Consensus 261 --~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~-~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf 337 (756)
.+++.+..+|+..++.|+.+|+.++..+....++. ...+.......|++.+...++-.+-..|+.+..+....+...
T Consensus 158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~ 237 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA 237 (591)
T ss_dssp HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH
T ss_pred cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH
Confidence 57888999999999999999999999887644321 000011122334455555666666666665543332211111
Q ss_pred ccccc-eeeecCCCCHHHHHHHHHHHHHhcC-----CCCHHHHHHHHHH---HhhhCCHHHHHHHHHHHHHHHhhcCCh-
Q 004394 338 ASDYK-HFYCQYNEPSYVKKLKLEMLTAVAN-----ESNTYEIVTELCE---YAANVDIPIARESIRAVGKIALQQYDV- 407 (756)
Q Consensus 338 ~~~~~-~f~c~~~dp~~IK~~kLdIL~~L~n-----~~Nv~~Iv~EL~~---Yl~~~D~~~~~~~I~aIg~lA~k~~~~- 407 (756)
..-+. ..-+..+.+..|+..+...+..+.+ ++-+..+++.+.. .+.+.|.+++.-++++|+.++.++|+.
T Consensus 238 ~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~~~p~~~ 317 (591)
T 2vgl_B 238 QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEIL 317 (591)
T ss_dssp HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHHHCCSTT
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhChHHH
Confidence 11111 1224566677999999999999874 3455555444332 445689999999999999999988864
Q ss_pred hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCC-ChHHHH
Q 004394 408 NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-DAPYIL 486 (756)
Q Consensus 408 ~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~-~~~~iL 486 (756)
..++..++.+.+ ...+|..+++..+..+.. ..+. +.++..+..++. -.+++.+..++|-||..+...+ +...++
T Consensus 318 ~~~~~~~~~~~~-d~~~Ir~~al~~L~~l~~-~~nv-~~iv~~L~~~l~--~~d~~~r~~~v~aI~~la~~~~~~~~~~v 392 (591)
T 2vgl_B 318 KQEIKVFFVKYN-DPIYVKLEKLDIMIRLAS-QANI-AQVLAELKEYAT--EVDVDFVRKAVRAIGRCAIKVEQSAERCV 392 (591)
T ss_dssp TTCTTTTSCCTT-SCHHHHHHHHHHHHHTCC-SSTH-HHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhheeccC-ChHHHHHHHHHHHHHHCC-hhhH-HHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence 222222211112 224677777766655442 1222 122222323321 2367788889999999887764 356778
Q ss_pred HHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcCCChHHHhHHH
Q 004394 487 ESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLADFHQDVHDRAL 544 (756)
Q Consensus 487 ~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d~d~dVrdRA~ 544 (756)
+.+.+-+.... ..|+...+.++..++-++|...+..+..+.+......++++|..+.
T Consensus 393 ~~Ll~ll~~~~-~~v~~e~i~~l~~ii~~~p~~~~~~v~~L~~~l~~~~~~~~~~~~~ 449 (591)
T 2vgl_B 393 STLLDLIQTKV-NYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMI 449 (591)
T ss_dssp HHHHHHHHTCC-HHHHHHHHHHHHHHHHHSCSSCCTTHHHHHHTTTTCCSHHHHHHHH
T ss_pred HHHHHHHcccc-hHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 88887777777 7888888888888888888644445556655554556889865543
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.47 E-value=2.1e-11 Score=153.04 Aligned_cols=475 Identities=13% Similarity=0.129 Sum_probs=292.3
Q ss_pred chhhhhhhhccCCChhhHHHHHHHHHHccccC-----ChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCC---hhhhHH
Q 004394 63 AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN-----PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLR---VANLVE 134 (756)
Q Consensus 63 ~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~-----~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~---~~ei~e 134 (756)
..+...+.-+.++|-..|+++--.+......+ ++..--++..+.+-+.|+|+.+|..|+++++.+. .+...+
T Consensus 6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~ 85 (1230)
T 1u6g_C 6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE 85 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44667777788888889988877776665432 2333356677888889999999999999988763 345678
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc--------cCCCchHHHHHhHhc-CCChhHHHHHHHHHHHHHhh
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC--------IDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~--------~~~~~i~~L~~lLL~-D~d~~Vv~~Al~aL~eI~~~ 205 (756)
.+.+.+.+.+.|+++.||.+|+.|+..+....+... ..+++++.|.+. +. +.++.+...|+.+|.++...
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~-l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA-IAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHH-HSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999987654320 014456777776 46 48899999999999999865
Q ss_pred cccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH-HHHHHHHHHHhcccc-hHHH---HH
Q 004394 206 EASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI-FDIMNLLEDRLQHAN-GAVV---LS 280 (756)
Q Consensus 206 ~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~-~~il~~l~~~L~~~n-~aVv---le 280 (756)
.+..... ....++..|+..+.+.+++.+...++.+..+....++.. ..+++.+...|.+.+ ..+. ++
T Consensus 165 ~~~~l~~--------~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 165 QGGLLVN--------FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp TCSSCTT--------THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred hHhHHHH--------HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHH
Confidence 4431100 113456677777888899999999999999876543322 235666666665432 2232 33
Q ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccccee------eecC------
Q 004394 281 TIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF------YCQY------ 348 (756)
Q Consensus 281 aik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f------~c~~------ 348 (756)
++..+....+. .+. ..+..+.+.+...+.+.++++|-.++..+..++...+.-+.+++..+ ...+
T Consensus 237 ~l~~l~~~~~~--~~~-~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~ 313 (1230)
T 1u6g_C 237 CIAAISRQAGH--RIG-EYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNY 313 (1230)
T ss_dssp HHHHHHHHSSG--GGT-TSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-----
T ss_pred HHHHHHHHhHH--HHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCC
Confidence 44333332211 111 11234566777788888899999999999999987775443322110 0000
Q ss_pred ------------------------------CCCHHHHHHHHHHHHHhcCCC--CHHH----HHHHHHHHhhhCCHHHHHH
Q 004394 349 ------------------------------NEPSYVKKLKLEMLTAVANES--NTYE----IVTELCEYAANVDIPIARE 392 (756)
Q Consensus 349 ------------------------------~dp~~IK~~kLdIL~~L~n~~--Nv~~----Iv~EL~~Yl~~~D~~~~~~ 392 (756)
+....+|..+.+.|..++... .+.. ++..|..++.+.+.+++..
T Consensus 314 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~ 393 (1230)
T 1u6g_C 314 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKAD 393 (1230)
T ss_dssp -------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHH
T ss_pred cccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHH
Confidence 001247899999998887632 2333 3455556667778899999
Q ss_pred HHHHHHHHHhhcCC--------------------h----hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch---
Q 004394 393 SIRAVGKIALQQYD--------------------V----NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH--- 445 (756)
Q Consensus 393 ~I~aIg~lA~k~~~--------------------~----~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~--- 445 (756)
++.+++.+...... . ...+..+++.+......+...++..+..++...|+...
T Consensus 394 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l 473 (1230)
T 1u6g_C 394 VFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI 473 (1230)
T ss_dssp HHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH
T ss_pred HHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH
Confidence 99999887765421 0 12344455556666666777788888888887765322
Q ss_pred -HHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCC-C-----hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhc-CC
Q 004394 446 -DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQ-D-----APYILESLTENWEEEPSAEVRLHLLTAVMKCFFK-RP 517 (756)
Q Consensus 446 -~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~-~-----~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~-~p 517 (756)
.++..+.+.+.+....++++..++-.++....... + .+.++..+...+.+.. ..|+...+.++..+.-. .+
T Consensus 474 ~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~-~~v~~~al~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 474 PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF-YKITSEALLVTQQLVKVIRP 552 (1230)
T ss_dssp HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHhcC
Confidence 22222333332221122443322222222211111 1 1234555555555555 77877666666555421 11
Q ss_pred ----------hhhHHHHHHHHHhhh-cCCChHHHhHHHHHHHHh
Q 004394 518 ----------PETQKVLGAALAAGL-ADFHQDVHDRALFYHRLL 550 (756)
Q Consensus 518 ----------~e~~~~l~~vL~~~~-~d~d~dVrdRA~~Y~rLL 550 (756)
+-...++..++.... .|.+++||+.|..-...+
T Consensus 553 ~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L 596 (1230)
T 1u6g_C 553 LDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQI 596 (1230)
T ss_dssp SSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 123445555555543 567999999998665443
No 11
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.45 E-value=5.4e-10 Score=133.86 Aligned_cols=519 Identities=10% Similarity=0.044 Sum_probs=306.0
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcC----CCccchhhhhhhhccCC-ChhhHHHHHHHHHHccccC-
Q 004394 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIG----IDVSAVFGEMVMCSATS-DIVLKKMCYLYVGNYAKVN- 94 (756)
Q Consensus 21 ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG----~Dvs~lF~~Vi~l~~s~-d~~~KkL~YLyl~~~~~~~- 94 (756)
+...||..|-+...+.+ ..- +..+..++..+... .....+++.++.++.++ +...|..+...+..+.+.-
T Consensus 92 ~~~~ik~~ll~~l~~~~---~~v-r~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 92 AKNQIKTNALTALVSIE---PRI-ANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp HHHHHHHHHHHHHTCSS---HHH-HHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCc---hHH-HHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 44566666665543322 222 33333444433221 24556788888888887 7777766655555444321
Q ss_pred C------hHHHHHHHHHHHHcCCC--ChHHHHHHHHHHhcC---Chhh-----hHHHHHHHHHhhcCCCChHHHHHHHHH
Q 004394 95 P------DLALLTINFLQRDCKDE--DPMIRGLALRSLCSL---RVAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIG 158 (756)
Q Consensus 95 ~------el~lL~iNtl~KDL~s~--Np~iR~LALrtLs~I---~~~e-----i~e~l~~~v~~~L~d~~pyVRKkAala 158 (756)
+ ...--++..+.+-+.|+ ++.+|..|+++++.+ .... ..+++.+.+.+.+.++++.||+.|+.+
T Consensus 168 ~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~ 247 (861)
T 2bpt_A 168 PQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGC 247 (861)
T ss_dssp TTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 1 22334556667777777 899999999999874 1111 135678888888999999999999999
Q ss_pred HHHHhhhcCCcccC--C-CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHH---------HHHHHhhccHHHH
Q 004394 159 VLKLYHISAPTCID--A-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA---------SREREALISKPVI 226 (756)
Q Consensus 159 l~kl~~~~p~~~~~--~-~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~---------~~~~~~ll~~~~~ 226 (756)
+.++...+|+.+.. . .+++.+... +.|.|..|...|+.++..+........... ++.........++
T Consensus 248 l~~l~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 326 (861)
T 2bpt_A 248 LCKIMSKYYTFMKPYMEQALYALTIAT-MKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVV 326 (861)
T ss_dssp HHHHHHHHGGGCHHHHHHTHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHH
Confidence 99999988876521 1 444555555 589999999999999988876421100000 0000000112345
Q ss_pred HHHHHHhccC------ChhHH-HHHHHHHHhhCCC-ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc-hhHH
Q 004394 227 YYLLNRIKEF------SEWAQ-CLVLELVAKYVPL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVHQ 297 (756)
Q Consensus 227 ~~Ll~~l~~~------~~W~Q-i~IL~lL~~y~p~-d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~-~~~~ 297 (756)
..++..+.+. ++|.. ....++|..+... .......+++.+...+++.+..+..+|+.++..+..... +...
T Consensus 327 ~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~ 406 (861)
T 2bpt_A 327 PNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRT 406 (861)
T ss_dssp HHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH
T ss_pred HHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHH
Confidence 5666666542 34642 2333444333211 123345677888888888888899999999888765422 2223
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccc--cccc----ceee-ecCCCCHHHHHHHHHHHHHhcCC--
Q 004394 298 QVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--ASDY----KHFY-CQYNEPSYVKKLKLEMLTAVANE-- 368 (756)
Q Consensus 298 ~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf--~~~~----~~f~-c~~~dp~~IK~~kLdIL~~L~n~-- 368 (756)
..+..+.+.|...+.+.++.+|..++..+..++...+.-+ ..+. ..++ +..+ +..+|..+...|..++..
T Consensus 407 ~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~ 485 (861)
T 2bpt_A 407 YYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLA 485 (861)
T ss_dssp HHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc-ChHHHHHHHHHHHHHHHhcc
Confidence 4456677778888888899999999998888886533211 1122 1121 2333 367888877777766542
Q ss_pred --------CCHHHHHHHHHHHhhhCC--HHHHHHHHHHHHHHHhhcCCh-hHHHH----HHHHHhhhc------------
Q 004394 369 --------SNTYEIVTELCEYAANVD--IPIARESIRAVGKIALQQYDV-NAIVD----RLLQFLEME------------ 421 (756)
Q Consensus 369 --------~Nv~~Iv~EL~~Yl~~~D--~~~~~~~I~aIg~lA~k~~~~-~~~vd----~Ll~LL~~~------------ 421 (756)
.-+..|+..|...+.+.| ..++..++.+++.++...+.. ..+++ .+++.+...
T Consensus 486 ~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~ 565 (861)
T 2bpt_A 486 EATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLED 565 (861)
T ss_dssp SSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhh
Confidence 246778888888887544 678899999999999887632 33333 344444421
Q ss_pred ---CchhhHHHHHHHHHHHhhCCCc-chH---HHHHHHHhhhccCCch-hHHHHHHhHhccCC----CCC-CChHHHHHH
Q 004394 422 ---KDYVTAEALVLVKDLLRKYPQW-SHD---CIAVVGSISSQNVQEP-KAKAALIWMLGEYS----QDM-QDAPYILES 488 (756)
Q Consensus 422 ---~~~v~~E~i~~i~~Il~~~p~~-~~~---~~~~l~~l~~~~i~~p-~ak~a~iWiLGEy~----~~i-~~~~~iL~~ 488 (756)
...+...++..+..+++..+.. ..+ ++..+..++.. .++ ..+..+++.+|... ..+ +-.+.++..
T Consensus 566 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~ 643 (861)
T 2bpt_A 566 AQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEK--KDSAFIEDDVFYAISALAASLGKGFEKYLETFSPY 643 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHS--TTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc--CCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1123345556677777766542 222 22222222211 112 34444444444322 211 113456666
Q ss_pred HhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHH----HHHhhhcC-CChHHHhHHHHHHH
Q 004394 489 LTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGA----ALAAGLAD-FHQDVHDRALFYHR 548 (756)
Q Consensus 489 l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~----vL~~~~~d-~d~dVrdRA~~Y~r 548 (756)
+.+.+.... ..+|...+.++..+.....+...+.+.. +++....+ .++++|..+...+.
T Consensus 644 l~~~l~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~ 707 (861)
T 2bpt_A 644 LLKALNQVD-SPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFG 707 (861)
T ss_dssp HHHHHHCTT-SHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHH
T ss_pred HHHHhcccc-HHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHH
Confidence 666665555 7789888887777665554444443333 33433333 46899998876553
No 12
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.44 E-value=4.6e-12 Score=140.27 Aligned_cols=331 Identities=13% Similarity=0.071 Sum_probs=224.1
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcC----Ch---hhhHH--HHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCc
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSL----RV---ANLVE--YLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPT 169 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I----~~---~ei~e--~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~ 169 (756)
+++..+.+.++++|+.+|-.|++++.++ .. .++++ .+++.+.++|.+. ++.||..|+.++..+...+++.
T Consensus 20 ~~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 20 VITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp --CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 4567777788889999999998888776 22 22333 5788888999988 8999999999999998755432
Q ss_pred ---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhcc-CChhHHHHHH
Q 004394 170 ---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE-FSEWAQCLVL 245 (756)
Q Consensus 170 ---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~-~~~W~Qi~IL 245 (756)
+.+.+.++.|.++ +.++|+.|...|+.+|..+....+. +.+ .++....+..|+..+.+ .++-.+...+
T Consensus 100 ~~~~~~~~~i~~L~~l-L~~~~~~vr~~a~~~L~~l~~~~~~-----~~~--~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIEL-LSSEFEDVQEQAVWALGNIAGDSTM-----CRD--YVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH-----HHH--HHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHccCCHH-----HHH--HHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 2236788999997 6899999999999999999875432 111 11222245667777774 5677788888
Q ss_pred HHHHhhCCCC-h----hHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHhhcCCCcchH
Q 004394 246 ELVAKYVPLD-S----NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQS 319 (756)
Q Consensus 246 ~lL~~y~p~d-~----~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~~~nir 319 (756)
..|..++... + .....+++.+...+++.+..|...++.++.++....++....+. ..+.+.|+.+|.+++++++
T Consensus 172 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 251 (450)
T 2jdq_A 172 WALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVV 251 (450)
T ss_dssp HHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHH
Confidence 8888876432 1 12345778888889999999999999999988764333222222 2356778899988899999
Q ss_pred HHHHHHHHHHHhhCCcc----ccccc-cee-eecCCCCHHHHHHHHHHHHHhcC--CCCHH-----HHHHHHHHHhhhCC
Q 004394 320 YAVLSHLHILVMRAPFI----FASDY-KHF-YCQYNEPSYVKKLKLEMLTAVAN--ESNTY-----EIVTELCEYAANVD 386 (756)
Q Consensus 320 YvaL~~l~~L~~~~p~l----f~~~~-~~f-~c~~~dp~~IK~~kLdIL~~L~n--~~Nv~-----~Iv~EL~~Yl~~~D 386 (756)
..++..|..++...+.. +.... ..+ -+..+.+..+|..++..|..++. +.+.. .++..|.+.+.+.+
T Consensus 252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~ 331 (450)
T 2jdq_A 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331 (450)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 99999999887654431 11111 111 12344557788888888888874 23332 34556777777778
Q ss_pred HHHHHHHHHHHHHHHhhc-CCh-h-----HHHHHHHHHhhhcCchhhHHHHHHHHHHHh
Q 004394 387 IPIARESIRAVGKIALQQ-YDV-N-----AIVDRLLQFLEMEKDYVTAEALVLVKDLLR 438 (756)
Q Consensus 387 ~~~~~~~I~aIg~lA~k~-~~~-~-----~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~ 438 (756)
.++++.++.+|+.++... ++. . ..+..|++++......+...++..+..++.
T Consensus 332 ~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 332 FRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 888888888888887653 211 1 244556666655444455555555555544
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.43 E-value=2e-10 Score=137.58 Aligned_cols=370 Identities=10% Similarity=0.079 Sum_probs=236.8
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc-CC-cccCCCchHHHHHhHhcCC-ChhHHHHHHHHHHHHHhhcc
Q 004394 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP-DPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 131 ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~-p~-~~~~~~~i~~L~~lLL~D~-d~~Vv~~Al~aL~eI~~~~~ 207 (756)
+..+.+-..+.+.|.++++.||++++.++..+...+ |. .. +++++.|.+. +.+. |+.+.-.|+.++..|.+.-+
T Consensus 91 ~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~-l~~~~~~~~r~~al~~l~~l~~~~~ 167 (861)
T 2bpt_A 91 EAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW--PELMKIMVDN-TGAEQPENVKRASLLALGYMCESAD 167 (861)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHH-TSTTSCHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccccc--HHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCC
Confidence 445566667777889999999999999999998864 53 22 4456667776 5777 89999999888888764211
Q ss_pred cchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccc--chHHHHHHHHHH
Q 004394 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTIKVF 285 (756)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~--n~aVvleaik~i 285 (756)
. ++ +. -......+++.+...+.+. +..|...|++++
T Consensus 168 ~-----------------------------~~------~~-------~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l 205 (861)
T 2bpt_A 168 P-----------------------------QS------QA-------LVSSSNNILIAIVQGAQSTETSKAVRLAALNAL 205 (861)
T ss_dssp T-----------------------------TS------ST-------TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred h-----------------------------hh------hH-------HHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHH
Confidence 0 00 00 0122345666666667666 677888888887
Q ss_pred Hhhccccc-hhH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccc-eee-----ecCCCCHHHHHH
Q 004394 286 LHLTLSMT-DVH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFY-----CQYNEPSYVKKL 357 (756)
Q Consensus 286 i~l~~~~~-~~~-~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-~f~-----c~~~dp~~IK~~ 357 (756)
..+..... ... ......+.+.|..++.+.++++|-.+++.+..++..+|..+.+|+. .++ +..+.+..+|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~ 285 (861)
T 2bpt_A 206 ADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASM 285 (861)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 66432111 010 0001223445566778889999999999999999999988877665 332 446677899999
Q ss_pred HHHHHHHhcCCC-----------------------CHHHHHHHHHHHhhhC-------CHHHHHHHHHHHHHHHhhcCCh
Q 004394 358 KLEMLTAVANES-----------------------NTYEIVTELCEYAANV-------DIPIARESIRAVGKIALQQYDV 407 (756)
Q Consensus 358 kLdIL~~L~n~~-----------------------Nv~~Iv~EL~~Yl~~~-------D~~~~~~~I~aIg~lA~k~~~~ 407 (756)
+++.+..++... .+..++..|+..+++. +..+++.+...++.++..+++.
T Consensus 286 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~ 365 (861)
T 2bpt_A 286 TVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH 365 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh
Confidence 999999887542 1256777777777643 2468889999999999887632
Q ss_pred --hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCC-Ccch-HHHHHHHHhhhccC--CchhHHHHHHhHhccCCCCC--
Q 004394 408 --NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYP-QWSH-DCIAVVGSISSQNV--QEPKAKAALIWMLGEYSQDM-- 479 (756)
Q Consensus 408 --~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p-~~~~-~~~~~l~~l~~~~i--~~p~ak~a~iWiLGEy~~~i-- 479 (756)
...+..+.+.+......+...++..+..|..... +... ..-.++..++ ..+ .++.++.+++|.+|.++..+
T Consensus 366 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~-~~l~d~~~~vr~~a~~~l~~l~~~~~~ 444 (861)
T 2bpt_A 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSIL-NLMNDQSLQVKETTAWCIGRIADSVAE 444 (861)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH-HGGGCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHHHHHHHHHHHHhhh
Confidence 3455666666665544566666666776664332 2111 1111222222 111 36778999999999987643
Q ss_pred -----CChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcC----Ch----hhHHHHHHHHHhhhc-CCChHHHhHHHH
Q 004394 480 -----QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKR----PP----ETQKVLGAALAAGLA-DFHQDVHDRALF 545 (756)
Q Consensus 480 -----~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~----p~----e~~~~l~~vL~~~~~-d~d~dVrdRA~~ 545 (756)
...+.++..+.+.+.+ + +.||.....++..+.-.. ++ -...++..+++.... |.+++||..|..
T Consensus 445 ~~~~~~~~~~~l~~l~~~l~~-~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 445 SIDPQQHLPGVVQACLIGLQD-H-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp GSCTTTTHHHHHHHHHHHHTS-C-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHhcc-C-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHH
Confidence 2356677777776644 4 788887777776654332 12 234455555555442 455788877765
Q ss_pred HHH
Q 004394 546 YHR 548 (756)
Q Consensus 546 Y~r 548 (756)
-..
T Consensus 523 al~ 525 (861)
T 2bpt_A 523 ALT 525 (861)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.43 E-value=1.5e-09 Score=130.16 Aligned_cols=379 Identities=10% Similarity=0.055 Sum_probs=234.6
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCC--ChhhHHHHHHHHHHccccC-Ch-
Q 004394 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATS--DIVLKKMCYLYVGNYAKVN-PD- 96 (756)
Q Consensus 21 ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~--d~~~KkL~YLyl~~~~~~~-~e- 96 (756)
+...||..|-+...+.++.. ..-..++..+............+++.++.++.++ +...|+.+...+..+.+.- ++
T Consensus 87 ~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (876)
T 1qgr_A 87 ARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (876)
T ss_dssp HHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhh
Confidence 44556666666554443332 3333444444333322244566788888888887 8778877776666665432 22
Q ss_pred ---HHHHHHHHHHHHcCCC--ChHHHHHHHHHHhcCCh---hhh-----HHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 004394 97 ---LALLTINFLQRDCKDE--DPMIRGLALRSLCSLRV---ANL-----VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (756)
Q Consensus 97 ---l~lL~iNtl~KDL~s~--Np~iR~LALrtLs~I~~---~ei-----~e~l~~~v~~~L~d~~pyVRKkAalal~kl~ 163 (756)
..-.++..+.+-+.++ |+.+|..|+++++.+.. ..+ .+.+.+.+.+++.+.++.||+.|+-|+..+.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~ 245 (876)
T 1qgr_A 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (876)
T ss_dssp HGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 2234456677777776 79999999999987531 111 1356777888889999999999999999999
Q ss_pred hhcCCccc---CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH-------------HHHHHHhhccHHHHH
Q 004394 164 HISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE-------------ASREREALISKPVIY 227 (756)
Q Consensus 164 ~~~p~~~~---~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~-------------~~~~~~~ll~~~~~~ 227 (756)
..+|+.+. ...+++.+... ..|.++.|...|+..+..+.........+ .+........+.++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 324 (876)
T 1qgr_A 246 SLYYQYMETYMGPALFAITIEA-MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHSGGGCHHHHTTTHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhH
Confidence 98887642 12566666665 47889999999998888886542100000 000000000022344
Q ss_pred HHHHHhcc------CChhHH----HHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc-hhH
Q 004394 228 YLLNRIKE------FSEWAQ----CLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-DVH 296 (756)
Q Consensus 228 ~Ll~~l~~------~~~W~Q----i~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~-~~~ 296 (756)
.++..+.. -++|.. ...|..+....+ ......+++.+...+++.+..|..+|+.++..+..... +..
T Consensus 325 ~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~ 402 (876)
T 1qgr_A 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHH
Confidence 45555542 235732 334444444433 23345677778888888889999999999988765432 222
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccc--ccccc----ee-eecCCCCHHHHHHHHHHHHHhcCC-
Q 004394 297 QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIF--ASDYK----HF-YCQYNEPSYVKKLKLEMLTAVANE- 368 (756)
Q Consensus 297 ~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf--~~~~~----~f-~c~~~dp~~IK~~kLdIL~~L~n~- 368 (756)
...+..+.+.|...+++.++.+|..++..+..++...+..+ .+++. .+ .+..+ +..+|..++..|..++..
T Consensus 403 ~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~ 481 (876)
T 1qgr_A 403 KPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAA 481 (876)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh
Confidence 23456677788888988889999999999999998755421 22222 11 23333 467788877777776532
Q ss_pred -------------------CCHHHHHHHHHHHhhhCC---HHHHHHHHHHHHHHHhhc
Q 004394 369 -------------------SNTYEIVTELCEYAANVD---IPIARESIRAVGKIALQQ 404 (756)
Q Consensus 369 -------------------~Nv~~Iv~EL~~Yl~~~D---~~~~~~~I~aIg~lA~k~ 404 (756)
.-+..|+..|...+.+.+ ..++..++.+++.++...
T Consensus 482 ~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 482 YEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp HHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred hhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 245677777777766542 345556666666665543
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.42 E-value=2.7e-11 Score=138.44 Aligned_cols=341 Identities=11% Similarity=0.073 Sum_probs=239.9
Q ss_pred cchhhhhhhhccCCChhhHHHHHHHHHHcccc--CChHHH----HHHHHHHHHcCCC-ChHHHHHHHHHHhcCCh--hhh
Q 004394 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKV--NPDLAL----LTINFLQRDCKDE-DPMIRGLALRSLCSLRV--ANL 132 (756)
Q Consensus 62 s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~--~~el~l----L~iNtl~KDL~s~-Np~iR~LALrtLs~I~~--~ei 132 (756)
...++.++..+.+++...++.+-..+..++.. ++..-. -++..|.+-+.++ |+.+|..|+.+|++|.. ++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 34467778888999999988888888877653 333211 2478888888887 99999999999999865 333
Q ss_pred HH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 133 VE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 133 ~e-----~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
.. ..++.+.++|.++++.||..|+.++..+....|+ .+...+.++.|..+ +.+.++.|..+|+.+|..++.
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGL-FNSNKPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHG-GGSCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHH-hccCCHHHHHHHHHHHHHHhC
Confidence 33 3467888889999999999999999999865433 22345788899997 688999999999999999986
Q ss_pred hc-ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHHH
Q 004394 205 LE-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVV 278 (756)
Q Consensus 205 ~~-~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aVv 278 (756)
.. +.... ......+..|+..+.+.++..+...+..|..+....++... .++..+..+|++.+..|.
T Consensus 245 ~~~~~~~~--------~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~ 316 (530)
T 1wa5_B 245 GKKPQPDW--------SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ 316 (530)
T ss_dssp CSSSCCCH--------HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred CCCCCCcH--------HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhH
Confidence 54 32211 01123566777778888899999999999988765544333 345677888889999999
Q ss_pred HHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHH
Q 004394 279 LSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKL 357 (756)
Q Consensus 279 leaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~ 357 (756)
..|++++..+....+...+.+++ .+.+.|+.+|.++++.+|..++..|..|+...+. .++.
T Consensus 317 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~-----------------~~~~- 378 (530)
T 1wa5_B 317 TPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE-----------------QIQA- 378 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----------------HHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----------------HHHH-
Confidence 99999999887544333233332 4556778888877788888888888766532211 1110
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC---h------hHHHHHHHHHhhhcCchhhHH
Q 004394 358 KLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYD---V------NAIVDRLLQFLEMEKDYVTAE 428 (756)
Q Consensus 358 kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~---~------~~~vd~Ll~LL~~~~~~v~~E 428 (756)
+.+ ..++..|...+.+.+.+++..++.+|+.++..... . ..++..|++++......+...
T Consensus 379 -------~~~----~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 447 (530)
T 1wa5_B 379 -------VID----ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEV 447 (530)
T ss_dssp -------HHH----TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHH
T ss_pred -------HHH----CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHH
Confidence 111 13456666777778899999999999999875422 1 124667777777665556666
Q ss_pred HHHHHHHHHhhC
Q 004394 429 ALVLVKDLLRKY 440 (756)
Q Consensus 429 ~i~~i~~Il~~~ 440 (756)
++..+..+++..
T Consensus 448 al~aL~~l~~~~ 459 (530)
T 1wa5_B 448 TLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 666666666543
No 16
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.41 E-value=3.4e-11 Score=137.55 Aligned_cols=381 Identities=13% Similarity=0.097 Sum_probs=260.6
Q ss_pred CcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------cchhhhhhhhccCC-ChhhHHHHHHHHHH
Q 004394 18 GKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATS-DIVLKKMCYLYVGN 89 (756)
Q Consensus 18 ~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dv-------s~lF~~Vi~l~~s~-d~~~KkL~YLyl~~ 89 (756)
.++.+.+|-..|.+ ++...+..++..+-.+...+.+- +.+.+.+++++.++ +..++..+--++.+
T Consensus 85 ~~~~i~~lv~~L~s-------~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~ 157 (530)
T 1wa5_B 85 LQQELPQMTQQLNS-------DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTN 157 (530)
T ss_dssp --CCHHHHHHHHSC-------SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 44567777776654 34567778876665555443222 23566677888886 88899999889999
Q ss_pred ccccCChHHHH-----HHHHHHHHcCCCChHHHHHHHHHHhcCChh--hhH-----HHHHHHHHhhcCCCChHHHHHHHH
Q 004394 90 YAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRVA--NLV-----EYLVGPLGLGLKDNNSYVRTVAVI 157 (756)
Q Consensus 90 ~~~~~~el~lL-----~iNtl~KDL~s~Np~iR~LALrtLs~I~~~--ei~-----e~l~~~v~~~L~d~~pyVRKkAal 157 (756)
++..+++..-. ++..|.+=+.++++.+|..|+.+|++|... +.. ..+++.+.+++.+.++.||+.|+.
T Consensus 158 l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~ 237 (530)
T 1wa5_B 158 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATW 237 (530)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHH
Confidence 88766654322 367777878889999999999999998542 222 236788999999999999999999
Q ss_pred HHHHHhhhc-CCc--ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc
Q 004394 158 GVLKLYHIS-APT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK 234 (756)
Q Consensus 158 al~kl~~~~-p~~--~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~ 234 (756)
++..+.... |.. ....+.++.|..+ +.+.|+.|+.+|+.+|..+....+.. ...++....+..|+..+.
T Consensus 238 ~L~~L~~~~~~~~~~~~~~~~l~~L~~l-L~~~d~~v~~~a~~~L~~L~~~~~~~-------~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 238 TLSNLCRGKKPQPDWSVVSQALPTLAKL-IYSMDTETLVDACWAISYLSDGPQEA-------IQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp HHHHHHCCSSSCCCHHHHGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHHSSCHHH-------HHHHHHTTCHHHHHHGGG
T ss_pred HHHHHhCCCCCCCcHHHHHhHHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCCHHH-------HHHHHhcCcHHHHHHHHC
Confidence 999999754 321 1224678888887 68999999999999999998643321 111122235677888888
Q ss_pred cCChhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHH
Q 004394 235 EFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLL 308 (756)
Q Consensus 235 ~~~~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~ 308 (756)
+.++..+...++.|..++..++.... .+++.+..+|++.+..|..+|+.++..+....++..+.++ ..+.++|+
T Consensus 310 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~ 389 (530)
T 1wa5_B 310 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV 389 (530)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH
T ss_pred CCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 88888999999999999876654433 3567788889999999999999999998754333222333 24567788
Q ss_pred HhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHH
Q 004394 309 TLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIP 388 (756)
Q Consensus 309 ~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~ 388 (756)
.+|.++++++|..++..|..++..... .|.+++. +.. ..++..|...+.+.|.+
T Consensus 390 ~lL~~~~~~v~~~a~~aL~~l~~~~~~--------------~~~~~~~--------l~~----~~~l~~L~~ll~~~~~~ 443 (530)
T 1wa5_B 390 KLLEVAEYKTKKEACWAISNASSGGLQ--------------RPDIIRY--------LVS----QGCIKPLCDLLEIADNR 443 (530)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTT--------------CTHHHHH--------HHH----TTCHHHHHHHTTTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhcCCC--------------cHHHHHH--------HHH----CCCHHHHHHHHhCCCHH
Confidence 889888999999999999988865211 0111111 111 12444555555556666
Q ss_pred HHHHHHHHHHHHHhhcC----------C-h------hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhh
Q 004394 389 IARESIRAVGKIALQQY----------D-V------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRK 439 (756)
Q Consensus 389 ~~~~~I~aIg~lA~k~~----------~-~------~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~ 439 (756)
++..++.+++.+....+ + . ...++.|..|+.+....|...+...+.+++..
T Consensus 444 v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 444 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 66666666665554321 1 0 12467777777776666777777777777653
No 17
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.41 E-value=1.3e-10 Score=139.72 Aligned_cols=470 Identities=12% Similarity=0.067 Sum_probs=281.5
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----h--HHHHH
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----L--VEYLV 137 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i--~e~l~ 137 (756)
.+.+++.+.+++...|+- -+.+..+. ...++..=++..|.+=|.++|+.+|..|+.+|++|...+ + .+.++
T Consensus 117 i~~lv~~L~~~~~~~r~~-a~~~l~~~-~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i 194 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHA-VVNLINYQ-DDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 194 (780)
T ss_dssp ---------CCSCHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHH
T ss_pred HHHHHHHhcCccHHHHHH-HHHHHHhh-hHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChH
Confidence 456677777776555442 22222222 223455566888888888999999999999999985422 1 13466
Q ss_pred HHHHhhcCC-CChHHHHHHHHHHHHHhhhc--CCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHH
Q 004394 138 GPLGLGLKD-NNSYVRTVAVIGVLKLYHIS--APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (756)
Q Consensus 138 ~~v~~~L~d-~~pyVRKkAalal~kl~~~~--p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~ 214 (756)
+.+.+.|.+ .++.+|+.|+.++.++.... ...+.+.+.++.|.++ +.+.++.|...|+.+|..|+...+..
T Consensus 195 ~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~l-L~~~~~~v~~~A~~aL~nLa~~~~~~----- 268 (780)
T 2z6g_A 195 SAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNM-LGSPVDSVLFHAITTLHNLLLHQEGA----- 268 (780)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHSTTH-----
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhCCChhh-----
Confidence 677777754 48999999999999976431 1122345778899997 68999999999999999998754321
Q ss_pred HHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHH-HHHHHHHHHhh
Q 004394 215 REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAV-VLSTIKVFLHL 288 (756)
Q Consensus 215 ~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aV-vleaik~ii~l 288 (756)
+........+..|+..+...++-.+...++.|..+...+++... ..++.+..+|++.+..+ ...|+.++..+
T Consensus 269 --~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L 346 (780)
T 2z6g_A 269 --KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346 (780)
T ss_dssp --HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 00111123566778877776655566666666665544433322 23566677777766544 44556666666
Q ss_pred ccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcc--ccccccee-eecCCCCHHHHHHHHHHHHH
Q 004394 289 TLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTA 364 (756)
Q Consensus 289 ~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~l--f~~~~~~f-~c~~~dp~~IK~~kLdIL~~ 364 (756)
... +.....+++ .+.++|+.++.+.+++++.-++..+..|+...+.. +..-+..+ -...+++..+|..+..+|..
T Consensus 347 s~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~ 425 (780)
T 2z6g_A 347 SVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 425 (780)
T ss_dssp HTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 543 222223322 34567888998888889999999998888765432 11111111 12356678899999999999
Q ss_pred hcCCC--CHH-----HHHHHHHHHhhhC-C-HHHHHHHHHHHHHHHhhcCCh---------hHHHHHHHHHhhhcCc-hh
Q 004394 365 VANES--NTY-----EIVTELCEYAANV-D-IPIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEKD-YV 425 (756)
Q Consensus 365 L~n~~--Nv~-----~Iv~EL~~Yl~~~-D-~~~~~~~I~aIg~lA~k~~~~---------~~~vd~Ll~LL~~~~~-~v 425 (756)
|+... |.. ..+..|.+.+.+. + .+++..++++|+.++...++. ...+..|+++|....+ .+
T Consensus 426 L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v 505 (780)
T 2z6g_A 426 LTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPL 505 (780)
T ss_dssp HTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHH
T ss_pred HHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHH
Confidence 98753 332 2466777777653 3 389999999999998765542 1246788898887765 78
Q ss_pred hHHHHHHHHHHHhhCCCcch-----HHHHHHHHhhhccCCchhHHHHHHhHhcc--CCCCC-------------------
Q 004394 426 TAEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWMLGE--YSQDM------------------- 479 (756)
Q Consensus 426 ~~E~i~~i~~Il~~~p~~~~-----~~~~~l~~l~~~~i~~p~ak~a~iWiLGE--y~~~i------------------- 479 (756)
..++...+.+|... +..+. .++..+.+++.. .+++.+..++|.+|. |.+-.
T Consensus 506 ~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~--~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~ 582 (780)
T 2z6g_A 506 IKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVR--AHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARD 582 (780)
T ss_dssp HHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHH--HHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHh--cchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcC
Confidence 88888889988753 22222 122233333321 123344444555443 22111
Q ss_pred -CChH-----HHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHH-----HHHhhhcCCChHHHhHHHHHHH
Q 004394 480 -QDAP-----YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGA-----ALAAGLADFHQDVHDRALFYHR 548 (756)
Q Consensus 480 -~~~~-----~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~-----vL~~~~~d~d~dVrdRA~~Y~r 548 (756)
.+.. ..+..+++-..... ..||.....++..+.. .+ +.+..+.. .|.....+.|++||..|..-..
T Consensus 583 ~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~-~~-~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~ 659 (780)
T 2z6g_A 583 IHNRIVIRGLNTIPLFVQLLYSPI-ENIQRVAAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 659 (780)
T ss_dssp HHHHHHHHHTCCHHHHHHGGGCSC-HHHHHHHHHHHHHHHT-SH-HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHCCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc-CH-HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0000 11334555555555 8888888888887752 22 23333332 2334456789999999876554
Q ss_pred Hhc
Q 004394 549 LLQ 551 (756)
Q Consensus 549 LL~ 551 (756)
-+.
T Consensus 660 ~l~ 662 (780)
T 2z6g_A 660 RMS 662 (780)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.40 E-value=3e-10 Score=125.63 Aligned_cols=339 Identities=14% Similarity=0.072 Sum_probs=239.3
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------c-chhhhhhhhccCC-ChhhHHHHHHHHHHccc
Q 004394 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------S-AVFGEMVMCSATS-DIVLKKMCYLYVGNYAK 92 (756)
Q Consensus 22 i~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dv-------s-~lF~~Vi~l~~s~-d~~~KkL~YLyl~~~~~ 92 (756)
+..|-+.|++ ++...|..+++.+-.+...+.+. . .+.+.+++++.++ +...+.-+--.+.+++.
T Consensus 22 l~~l~~~l~s-------~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 94 (450)
T 2jdq_A 22 TSDMIEMIFS-------KSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIAS 94 (450)
T ss_dssp CHHHHHHHHS-------SCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 6667777764 34566777776665555433221 1 3466667788887 88888888888888877
Q ss_pred cCChHHH-----HHHHHHHHHcCCCChHHHHHHHHHHhcCChh--hhH-----HHHHHHHHhhcCC-CChHHHHHHHHHH
Q 004394 93 VNPDLAL-----LTINFLQRDCKDEDPMIRGLALRSLCSLRVA--NLV-----EYLVGPLGLGLKD-NNSYVRTVAVIGV 159 (756)
Q Consensus 93 ~~~el~l-----L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~--ei~-----e~l~~~v~~~L~d-~~pyVRKkAalal 159 (756)
.+++..- -++..|.+=++++|+.+|..|+.+|++|... +.. ..+++.+.+++.+ .++.||+.|+.++
T Consensus 95 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L 174 (450)
T 2jdq_A 95 GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174 (450)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5554321 2578888889999999999999999998642 222 2357788888885 7999999999999
Q ss_pred HHHhhhc-CCc--ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccC
Q 004394 160 LKLYHIS-APT--CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF 236 (756)
Q Consensus 160 ~kl~~~~-p~~--~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~ 236 (756)
..+.... |.. ....+.++.|.++ +.+.|+.|+.+|+.+|..+....+.. ....+....+..|+..+.+.
T Consensus 175 ~~l~~~~~~~~~~~~~~~~l~~L~~~-l~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~ll~~~ 246 (450)
T 2jdq_A 175 SNLCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADACWALSYLSDGPNDK-------IQAVIDAGVCRRLVELLMHN 246 (450)
T ss_dssp HHHHCCSSSCCCGGGTGGGHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSSHHH-------HHHHHHTTTHHHHHHHTTCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHCCCcHH-------HHHHHHcCcHHHHHHHHCCC
Confidence 9999754 432 1125678889887 68999999999999999997643211 01111223566777778777
Q ss_pred ChhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHh
Q 004394 237 SEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTL 310 (756)
Q Consensus 237 ~~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~L 310 (756)
++-.+...++.|..+...++.... .+++.+..+|++.+..|..+|+.++..+....++..+.++ ..+.+.|+.+
T Consensus 247 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 326 (450)
T 2jdq_A 247 DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISI 326 (450)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 877899999999998876554332 3677888889999999999999999998754333323333 2466778888
Q ss_pred hcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHH
Q 004394 311 VSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIA 390 (756)
Q Consensus 311 Lss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~ 390 (756)
|.++++++|..+...|..++... ++..++. +.+ ..++..|.+.+.+.|.+++
T Consensus 327 l~~~~~~v~~~a~~~L~~l~~~~----------------~~~~~~~--------l~~----~~~i~~L~~ll~~~~~~v~ 378 (450)
T 2jdq_A 327 LQTAEFRTRKEAAWAITNATSGG----------------SAEQIKY--------LVE----LGCIKPLCDLLTVMDSKIV 378 (450)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHC----------------CHHHHHH--------HHH----HTCHHHHHHGGGSSCHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcCC----------------CHHHHHH--------HHH----CCCHHHHHHHhcCCCHHHH
Confidence 88888999999988888877541 1111111 111 2356667777777888888
Q ss_pred HHHHHHHHHHHhh
Q 004394 391 RESIRAVGKIALQ 403 (756)
Q Consensus 391 ~~~I~aIg~lA~k 403 (756)
..++.+++.++..
T Consensus 379 ~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 379 QVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888765
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.40 E-value=6.6e-11 Score=134.89 Aligned_cols=340 Identities=14% Similarity=0.075 Sum_probs=242.9
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHccccCC--hHHHH----HHHHHHHHcCCCC-hHHHHHHHHHHhcCCh--hhhHH-
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNP--DLALL----TINFLQRDCKDED-PMIRGLALRSLCSLRV--ANLVE- 134 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~--el~lL----~iNtl~KDL~s~N-p~iR~LALrtLs~I~~--~ei~e- 134 (756)
++.+++.+.+++...+.-+--++..++...+ ....+ ++..|.+=+.+++ +.+|..|+.+|++|.. ++...
T Consensus 76 l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~ 155 (528)
T 4b8j_A 76 LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKV 155 (528)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 6778888899998888888777777654332 22112 3677888888876 9999999999998865 33322
Q ss_pred ----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 135 ----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 135 ----~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
..++.+.++|.++++.||..|+.++.++....|+ .+...+.++.|..+|..+.++.|..+|+.+|..++...+
T Consensus 156 ~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~ 235 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235 (528)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSS
T ss_pred HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC
Confidence 3678899999999999999999999999865543 233456788888873378899999999999999987654
Q ss_pred cchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccchHHHHHHH
Q 004394 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTI 282 (756)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~aVvleai 282 (756)
..... .....+..|+..+...++..+...+..|..+...++..... +++.+..+|++.+..|...|+
T Consensus 236 ~~~~~--------~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 236 QPSFE--------QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307 (528)
T ss_dssp CCCHH--------HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred CCcHH--------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHH
Confidence 32111 11235677888888889999999999999988665543333 456888899999999999999
Q ss_pred HHHHhhccccchhHHHHH-HHHHHHHHHhhcCC-CcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHH
Q 004394 283 KVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLE 360 (756)
Q Consensus 283 k~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~-~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLd 360 (756)
+++..+........+.++ ..+.+.|+.+|.+. ++.++.-+...|..|+...+. .++
T Consensus 308 ~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~-----------------~~~----- 365 (528)
T 4b8j_A 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKD-----------------QIQ----- 365 (528)
T ss_dssp HHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHH-----------------HHH-----
T ss_pred HHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHH-----------------HHH-----
Confidence 999988764433322232 23456777888777 788888888777766642211 111
Q ss_pred HHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhc-CCh------hHHHHHHHHHhhhcCchhhHHHHHHH
Q 004394 361 MLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQ-YDV------NAIVDRLLQFLEMEKDYVTAEALVLV 433 (756)
Q Consensus 361 IL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~-~~~------~~~vd~Ll~LL~~~~~~v~~E~i~~i 433 (756)
.+.+. .++..|.+.+.+.|.++++.++.+|+.++..- ++. ..++..+++++......+...++..+
T Consensus 366 ---~~~~~----~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L 438 (528)
T 4b8j_A 366 ---AVINA----GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGL 438 (528)
T ss_dssp ---HHHHT----TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ---HHHHC----CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 01111 34566667777788999999999999998762 221 13567788888877777777777777
Q ss_pred HHHHhhCC
Q 004394 434 KDLLRKYP 441 (756)
Q Consensus 434 ~~Il~~~p 441 (756)
.+|++..+
T Consensus 439 ~~l~~~~~ 446 (528)
T 4b8j_A 439 ENILKVGE 446 (528)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776543
No 20
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=7.7e-12 Score=146.44 Aligned_cols=407 Identities=11% Similarity=0.050 Sum_probs=243.0
Q ss_pred HHHHHHcCCCChHHHHHHHHHHhcC---ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 103 NFLQRDCKDEDPMIRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 103 Ntl~KDL~s~Np~iR~LALrtLs~I---~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
+-+++.+++++...|+-|++-+-.+ |. ++ ......+.+++.+++..+||-+.+++..+.+.+|+.. .-.++.+
T Consensus 37 ~~ir~~l~~~~~~~k~~~l~kli~~~~~G~-d~-~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~--~l~in~l 112 (618)
T 1w63_A 37 AAIRSSFREEDNTYRCRNVAKLLYMHMLGY-PA-HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH--LLMTNCI 112 (618)
T ss_dssp HHHHHHHTTTCTTTHHHHHHHHHHHHHTTC-CC-GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH--HHHHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHcCC-CC-cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH--HHHHHHH
Confidence 4455555555555555544443331 11 11 2233444455556666666666666666655555532 1123444
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~ 259 (756)
.+- +.|+|+.|++.|+.+|..|.. ++ .+ +..+..+.+.+.+.+|...-+.+..+.++...+++..
T Consensus 113 ~kD-L~~~n~~vr~lAL~~L~~i~~--~~----~~--------~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 113 KND-LNHSTQFVQGLALCTLGCMGS--SE----MC--------RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHH-HSCSSSHHHHHHHHHHHHHCC--HH----HH--------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHh-cCCCCHhHHHHHHHHHHhcCC--HH----HH--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH
Confidence 443 356666666666666666532 10 00 1223334444455566665555555554443344444
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhc---------------CCCcchHHHHHH
Q 004394 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVS---------------SGSPEQSYAVLS 324 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLs---------------s~~~nirYvaL~ 324 (756)
..+++.+..+|...|+.|+..|+.++..+....++.. ..+.++.+.|..+|. ..++-.|-.+++
T Consensus 178 ~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~-~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~ 256 (618)
T 1w63_A 178 EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML-AHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILR 256 (618)
T ss_dssp GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHH-HHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHH
Confidence 4566667777888889999999999888875443321 122333444444332 236777888888
Q ss_pred HHHHHHhhCCccccccccee-------eecCCCCHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHhhhCCHHHHHHHHHH
Q 004394 325 HLHILVMRAPFIFASDYKHF-------YCQYNEPSYVKKLKLEMLTAVANESNT-YEIVTELCEYAANVDIPIARESIRA 396 (756)
Q Consensus 325 ~l~~L~~~~p~lf~~~~~~f-------~c~~~dp~~IK~~kLdIL~~L~n~~Nv-~~Iv~EL~~Yl~~~D~~~~~~~I~a 396 (756)
.+..+....|..-..-...+ .+..+....|...+...+..+.+.... ...++-|..++.+.|.+++.-++.+
T Consensus 257 ~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~ 336 (618)
T 1w63_A 257 LLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTS 336 (618)
T ss_dssp HHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 88877766554211111111 122334457888888888888664332 2366777788888899999999999
Q ss_pred HHHHHhhcCCh-hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccC
Q 004394 397 VGKIALQQYDV-NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEY 475 (756)
Q Consensus 397 Ig~lA~k~~~~-~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy 475 (756)
|+.++.+.|+. ..+...++..+.....+|...++..+..+... .+. +.++..+...+.+ .+++.+..++..||.-
T Consensus 337 L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~-~nv-~~iv~eL~~~l~~--~d~e~r~~~v~~I~~l 412 (618)
T 1w63_A 337 LLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG-NNI-RGMMKELLYFLDS--CEPEFKADCASGIFLA 412 (618)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS-SST-HHHHHHHHHHHHH--CCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc-ccH-HHHHHHHHHHHHh--CCHHHHHHHHHHHHHH
Confidence 99999887754 45778888888887888999888888887653 222 2233323333222 4577888888888888
Q ss_pred CCCC-CChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhhHHHHHHHHHhhhcC
Q 004394 476 SQDM-QDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPETQKVLGAALAAGLAD 534 (756)
Q Consensus 476 ~~~i-~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~~~~~d 534 (756)
+... ++....+..+++-+.... ..++..++..+..+.-++|+.-+..+..+++....+
T Consensus 413 a~k~~~~~~~~v~~ll~lL~~~~-~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~ 471 (618)
T 1w63_A 413 AEKYAPSKRWHIDTIMRVLTTAG-SYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGD 471 (618)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTG-GGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHC
T ss_pred HHHhCccHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcc
Confidence 7765 456667777776555555 567777888888888888854444666666655543
No 21
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.37 E-value=1.7e-10 Score=138.56 Aligned_cols=446 Identities=12% Similarity=0.057 Sum_probs=280.8
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC--ccc-CCCchHH
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP--TCI-DADFPPT 178 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~--~~~-~~~~i~~ 178 (756)
+..+.++|.++++.+|..|++.++.+...++....++.+.++|.+.++.||..|+.++.++....+. .+. .++.++.
T Consensus 117 i~~lv~~L~~~~~~~r~~a~~~l~~~~~~~i~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~ 196 (780)
T 2z6g_A 117 HPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSA 196 (780)
T ss_dssp ---------CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHhhhHHHHHhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHH
Confidence 6789999999999999999999988777778888899999999999999999999999998864321 111 2356777
Q ss_pred HHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhH
Q 004394 179 LKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE 258 (756)
Q Consensus 179 L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e 258 (756)
|.++|.++.|+.+..+|+.+|..+...... +........+..|+..+...++-.|...+..|..++..+++.
T Consensus 197 Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~--------~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~ 268 (780)
T 2z6g_A 197 IVRTMQNTNDVETARCTSGTLHNLSHHREG--------LLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268 (780)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHTSHHH--------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHhCCchh--------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhh
Confidence 777743456999999999999998653210 111111235677888888888889999999998876443222
Q ss_pred H-----HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHhhcCCCcc-hHHHHHHHHHHHHh
Q 004394 259 I-----FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPE-QSYAVLSHLHILVM 331 (756)
Q Consensus 259 ~-----~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~~~n-irYvaL~~l~~L~~ 331 (756)
. ...+..+..+|++.+..|.-.|+.++-.+....++.+..+. ......|+.++.+.+++ .+..+...+..|..
T Consensus 269 ~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~ 348 (780)
T 2z6g_A 269 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV 348 (780)
T ss_dssp HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Confidence 2 23567788888888877766666666555433233322222 13456788888765544 45566666666653
Q ss_pred hCCc----cccccc-ce-eeecCCCCHHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 004394 332 RAPF----IFASDY-KH-FYCQYNEPSYVKKLKLEMLTAVANES----NTYEIVTELCEYAANVDIPIARESIRAVGKIA 401 (756)
Q Consensus 332 ~~p~----lf~~~~-~~-f~c~~~dp~~IK~~kLdIL~~L~n~~----Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA 401 (756)
.+. ++.... .. +-+..+.+..+++.++..|..|+... ....++..|...+.+.|.++++.++.+++.++
T Consensus 349 -~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~ 427 (780)
T 2z6g_A 349 -CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 427 (780)
T ss_dssp -STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred -ChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 222 222111 11 11234556789999999999998543 46788999999999999999999999999998
Q ss_pred hhcCCh------hHHHHHHHHHhhhcCc--hhhHHHHHHHHHHHhhCCCcc---h-----HHHHHHHHhhhccCCchhHH
Q 004394 402 LQQYDV------NAIVDRLLQFLEMEKD--YVTAEALVLVKDLLRKYPQWS---H-----DCIAVVGSISSQNVQEPKAK 465 (756)
Q Consensus 402 ~k~~~~------~~~vd~Ll~LL~~~~~--~v~~E~i~~i~~Il~~~p~~~---~-----~~~~~l~~l~~~~i~~p~ak 465 (756)
...+.. ...+..|+++|...++ .+...++..+.+|....++.. . ..+..+.+++. .-.++..+
T Consensus 428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~-~~~~~~v~ 506 (780)
T 2z6g_A 428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLI 506 (780)
T ss_dssp SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTS-TTCCHHHH
T ss_pred hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhc-CCChHHHH
Confidence 653221 1367889999987443 677788888888876655521 1 11233344432 22345788
Q ss_pred HHHHhHhccCCCCCCC---------hHHHHHHHhhh----------------hcc-CChHHHHHHHHHHhhHhhhcCChh
Q 004394 466 AALIWMLGEYSQDMQD---------APYILESLTEN----------------WEE-EPSAEVRLHLLTAVMKCFFKRPPE 519 (756)
Q Consensus 466 ~a~iWiLGEy~~~i~~---------~~~iL~~l~~~----------------f~~-e~~~~Vq~~lLtA~~Kl~~~~p~e 519 (756)
..++|.||..+..-.+ .+.+++.+... +.. ..+.+++...+.++.++.. .+ +
T Consensus 507 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~-~ 584 (780)
T 2z6g_A 507 KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DI-H 584 (780)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SH-H
T ss_pred HHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-Ch-h
Confidence 8899999987642211 12222222211 111 1225677777888887752 22 2
Q ss_pred hHHHHH-----HHHHhhhcCCChHHHhHHHHHHHHhcCCHHHHHh
Q 004394 520 TQKVLG-----AALAAGLADFHQDVHDRALFYHRLLQYNVSVAER 559 (756)
Q Consensus 520 ~~~~l~-----~vL~~~~~d~d~dVrdRA~~Y~rLL~~~~e~a~~ 559 (756)
.+..+. ..|-....+.+++||..|..-..-|..+++..+.
T Consensus 585 ~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 629 (780)
T 2z6g_A 585 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA 629 (780)
T ss_dssp HHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred hHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHH
Confidence 222221 2233344578999999988765545555544333
No 22
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.36 E-value=6.9e-10 Score=125.52 Aligned_cols=368 Identities=11% Similarity=0.060 Sum_probs=235.8
Q ss_pred ChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----hH--HHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhhc
Q 004394 95 PDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHIS 166 (756)
Q Consensus 95 ~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i~--e~l~~~v~~~L~d-~~pyVRKkAalal~kl~~~~ 166 (756)
++...-++..+.+=++++|+.+|..|+.+++++...+ +. +..++.+.+.|.+ +++.+|+.|+.++.++....
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 4444456788888888999999999999999885421 22 2467777787764 58999999999999976431
Q ss_pred --CCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHH
Q 004394 167 --APTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLV 244 (756)
Q Consensus 167 --p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~I 244 (756)
...+.+.+.++.|.++ ++++|+.|...|+.+|..++..++.. +..+.....+..|+..+.+.++-.+...
T Consensus 92 ~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~g~i~~L~~ll~~~~~~~~~~~ 163 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAIT 163 (529)
T ss_dssp HHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHHCTTH-------HHHHHHHTHHHHHHHGGGCCCHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcch-------HHHHHHcCCHHHHHHHHhcCCHHHHHHH
Confidence 1122245778889897 68999999999999999998754331 1111223356778888887776667777
Q ss_pred HHHHHhhCCCChhHHHH-----HHHHHHHHhcccch-HHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHhhcCCCcc
Q 004394 245 LELVAKYVPLDSNEIFD-----IMNLLEDRLQHANG-AVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPE 317 (756)
Q Consensus 245 L~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~-aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~~~n 317 (756)
...|..+...+++.... .++.+...+++.+. .+...+.+++..+... ++....+. ..+.++|+.++.+++++
T Consensus 164 ~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~ 242 (529)
T 1jdh_A 164 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQR 242 (529)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTTTSSCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhCCChH
Confidence 77777776555433322 34566667766544 4556677777777643 23333333 24567788899888899
Q ss_pred hHHHHHHHHHHHHhhCCcc--ccccccee-eecCCCCHHHHHHHHHHHHHhcCCC--CHHH-----HHHHHHHHhhhC--
Q 004394 318 QSYAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV-- 385 (756)
Q Consensus 318 irYvaL~~l~~L~~~~p~l--f~~~~~~f-~c~~~dp~~IK~~kLdIL~~L~n~~--Nv~~-----Iv~EL~~Yl~~~-- 385 (756)
++..++..+..+....+.. ...-+..+ -...+++..++..+...|..|+..+ |... .++.|.+.+.+.
T Consensus 243 ~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 243 LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCC
Confidence 9999999998888654431 11111111 1235667889999999999998753 3333 356667777652
Q ss_pred CHHHHHHHHHHHHHHHhhcCChh---------HHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCCCcchHH-----HHH
Q 004394 386 DIPIARESIRAVGKIALQQYDVN---------AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYPQWSHDC-----IAV 450 (756)
Q Consensus 386 D~~~~~~~I~aIg~lA~k~~~~~---------~~vd~Ll~LL~~~~~-~v~~E~i~~i~~Il~~~p~~~~~~-----~~~ 450 (756)
+.+++..++++++.++...++.. ..+..+++++....+ .+..+++..+.++... ++.+... +..
T Consensus 323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~ 401 (529)
T 1jdh_A 323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPR 401 (529)
T ss_dssp CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHH
Confidence 37899999999999987655421 246778888887664 7888888888888764 3333222 222
Q ss_pred HHHhhhccCCchhHHHHHHhHhcc
Q 004394 451 VGSISSQNVQEPKAKAALIWMLGE 474 (756)
Q Consensus 451 l~~l~~~~i~~p~ak~a~iWiLGE 474 (756)
+.+++.+ .+++.+..++|.++.
T Consensus 402 L~~ll~~--~~~~v~~~a~~~l~n 423 (529)
T 1jdh_A 402 LVQLLVR--AHQDTQRRTSMGGTQ 423 (529)
T ss_dssp HHHHHHH--HHHHHC---------
T ss_pred HHHHHHH--HhHHHHHHHhcccCc
Confidence 3333321 345677778888876
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.35 E-value=7.3e-10 Score=129.91 Aligned_cols=440 Identities=11% Similarity=0.053 Sum_probs=278.4
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----hH--HHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhhcC-
Q 004394 97 LALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LV--EYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISA- 167 (756)
Q Consensus 97 l~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i~--e~l~~~v~~~L~d-~~pyVRKkAalal~kl~~~~p- 167 (756)
+..-++..|.+=|+++|+.+|..|+++|+++...+ +. +..++.+.+.|.+ .++.||+.|+.++..+.....
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~ 90 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG 90 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence 33345677777778899999999999999875422 11 2566777777765 489999999999887654311
Q ss_pred -CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHH
Q 004394 168 -PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLE 246 (756)
Q Consensus 168 -~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~ 246 (756)
..+.+.+.++.|.++ +.+.|+.|+..|+.+|..++...... +..+.....+..|+..+...++-.+...++
T Consensus 91 ~~~i~~~g~i~~Lv~l-L~~~~~~v~~~A~~aL~nL~~~~~~~-------~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 91 LLAIFKSGGIPALVKM-LGSPVDSVLFYAITTLHNLLLHQEGA-------KMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp HHHHHTTTHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHSTTH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHhCcchh-------HHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 122346788899997 68999999999999999998754321 111122235677888888777766777677
Q ss_pred HHHhhCCCChhHHHH-----HHHHHHHHhcccc-hHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchH
Q 004394 247 LVAKYVPLDSNEIFD-----IMNLLEDRLQHAN-GAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQS 319 (756)
Q Consensus 247 lL~~y~p~d~~e~~~-----il~~l~~~L~~~n-~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nir 319 (756)
+|..+...+++.... .++.+..+|++.+ ..+...|++++..+... ++.+..+++ .+.++|+.++.+.+++++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHH
Confidence 787776555443332 3566777777654 45677888888877643 333333333 355778889988889999
Q ss_pred HHHHHHHHHHHhhCCcc--ccccccee-eecCCCCHHHHHHHHHHHHHhcCCC--CHHH-----HHHHHHHHhhhC-C-H
Q 004394 320 YAVLSHLHILVMRAPFI--FASDYKHF-YCQYNEPSYVKKLKLEMLTAVANES--NTYE-----IVTELCEYAANV-D-I 387 (756)
Q Consensus 320 YvaL~~l~~L~~~~p~l--f~~~~~~f-~c~~~dp~~IK~~kLdIL~~L~n~~--Nv~~-----Iv~EL~~Yl~~~-D-~ 387 (756)
..++..|..+....+.. ...-+..+ ....+++..++..+...|..|+... |... .+..|.+++.+. + .
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~ 321 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 321 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcH
Confidence 99999999887655431 11111111 1335667889999999999998753 3333 466777888764 3 6
Q ss_pred HHHHHHHHHHHHHHhhcCCh---------hHHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCCCcchH-----HHHHHH
Q 004394 388 PIARESIRAVGKIALQQYDV---------NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWSHD-----CIAVVG 452 (756)
Q Consensus 388 ~~~~~~I~aIg~lA~k~~~~---------~~~vd~Ll~LL~~~~-~~v~~E~i~~i~~Il~~~p~~~~~-----~~~~l~ 452 (756)
+++..++++++.++...++. ...+..++++|.... ..+..+++..+.+|... ++.+.. ++..+.
T Consensus 322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~-~~~~~~i~~~~~i~~Lv 400 (644)
T 2z6h_A 322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLV 400 (644)
T ss_dssp HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC-HHHHHHHHHcCCHHHHH
Confidence 89999999999998654431 135778889888765 37888888888888764 322222 222233
Q ss_pred HhhhccCCchhHHHHHHhHhcc--CCCCCCChHH--------------------------HHHHHhhhhccCChHHHHHH
Q 004394 453 SISSQNVQEPKAKAALIWMLGE--YSQDMQDAPY--------------------------ILESLTENWEEEPSAEVRLH 504 (756)
Q Consensus 453 ~l~~~~i~~p~ak~a~iWiLGE--y~~~i~~~~~--------------------------iL~~l~~~f~~e~~~~Vq~~ 504 (756)
+++.+ .+++.+..++|.++. +.+-.. ..+ .+..+++-..... ..++..
T Consensus 401 ~lL~~--~~~~vr~~a~~al~n~~~~~~~~-~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~-~~v~~~ 476 (644)
T 2z6h_A 401 QLLVR--AHQDTQRRTSMGGTQQQFVEGVR-MEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI-ENIQRV 476 (644)
T ss_dssp HHHHH--HHHHHTTC----------CCSSC-HHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSC-HHHHHH
T ss_pred HHHhc--cchhhhhHhhhccccchhccccc-HHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCC-HHHHHH
Confidence 33321 123344445565554 221110 111 1334444444455 788888
Q ss_pred HHHHhhHhhhcCChhhHHHHH-----HHHHhhhcCCChHHHhHHHHHHHHhcC
Q 004394 505 LLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQDVHDRALFYHRLLQY 552 (756)
Q Consensus 505 lLtA~~Kl~~~~p~e~~~~l~-----~vL~~~~~d~d~dVrdRA~~Y~rLL~~ 552 (756)
...++.++.. .+ +....+. ..|.....+.|++||..|..-..-+..
T Consensus 477 a~~aL~~l~~-~~-~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~ 527 (644)
T 2z6h_A 477 AAGVLCELAQ-DK-EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 527 (644)
T ss_dssp HHHHHHHHHT-SH-HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHc-CH-HHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 8888888763 22 3333332 234455667899999998876655544
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.34 E-value=7.3e-10 Score=126.24 Aligned_cols=297 Identities=14% Similarity=0.068 Sum_probs=216.0
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCC-Cc------cchhhhhhhhccCCC-hhhHHHHHHHHHHccc
Q 004394 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGI-DV------SAVFGEMVMCSATSD-IVLKKMCYLYVGNYAK 92 (756)
Q Consensus 21 ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~-Dv------s~lF~~Vi~l~~s~d-~~~KkL~YLyl~~~~~ 92 (756)
++.+|-..|.+ ++...+..+++.+-.+...+. +. ..+.+.+++++.+++ ...+..+--++.+++.
T Consensus 75 ~l~~lv~~L~s-------~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~ 147 (528)
T 4b8j_A 75 SLPAMIGGVYS-------DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIAS 147 (528)
T ss_dssp CHHHHHHHHTS-------SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-------CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 35555555543 345677777765555443322 11 124566678888876 8888888888998887
Q ss_pred cCChHHHH-----HHHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhHH-----HHHHHHHhhc-CCCChHHHHHHHHHH
Q 004394 93 VNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGL-KDNNSYVRTVAVIGV 159 (756)
Q Consensus 93 ~~~el~lL-----~iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~e-----~l~~~v~~~L-~d~~pyVRKkAalal 159 (756)
.+++.... ++..|.+-+.++|+.+|..|+.+|++|.. ++..+ ..++.+.++| .+.++.||+.|+.++
T Consensus 148 ~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L 227 (528)
T 4b8j_A 148 GTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTL 227 (528)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66664332 57889999999999999999999999853 22222 2467888888 788999999999999
Q ss_pred HHHhhhcCCcc--cCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCC
Q 004394 160 LKLYHISAPTC--IDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS 237 (756)
Q Consensus 160 ~kl~~~~p~~~--~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~ 237 (756)
..+....|... ...+.++.|..+ +.+.|+.|+.+|+.+|..+....+.. ...++....+..|+..+...+
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~l-L~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARL-IHSNDEEVLTDACWALSYLSDGTNDK-------IQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHH-TTCCCHHHHHHHHHHHHHHTSSCHHH-------HHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHcCCHHH-------HHHHHHcCHHHHHHHHHcCCC
Confidence 99998654421 235678888887 68999999999999999997543210 011122235677888888889
Q ss_pred hhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhccc-chHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHh
Q 004394 238 EWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTL 310 (756)
Q Consensus 238 ~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~-n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~L 310 (756)
+..+...+..|..++..++..... ++..+..+|++. +..|..+|+.++..+....++....+++ .+.++|+.+
T Consensus 300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~l 379 (528)
T 4b8j_A 300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNL 379 (528)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998766544332 467788889888 8999999999999887543332223332 456788889
Q ss_pred hcCCCcchHHHHHHHHHHHHhh
Q 004394 311 VSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 311 Lss~~~nirYvaL~~l~~L~~~ 332 (756)
|.+++++++..++..|..++..
T Consensus 380 L~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 380 LQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHcC
Confidence 9888899999999999888765
No 25
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.31 E-value=3.8e-09 Score=132.62 Aligned_cols=463 Identities=11% Similarity=0.075 Sum_probs=285.7
Q ss_pred CChHHHHHHHHHHHHHHhcC---CC---ccchhhhhhhhccCCChhhHHHHHHHHHHccccCCh-HHHHHHHHHHHHcCC
Q 004394 39 GIDDSKRELFKKVISYMTIG---ID---VSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPD-LALLTINFLQRDCKD 111 (756)
Q Consensus 39 ~~~~~kk~~lkKlI~~~~lG---~D---vs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~e-l~lL~iNtl~KDL~s 111 (756)
.|.+.|+.++..+.-..... .| ...+...+++.+.+++...|+.+...+..++..-++ ..--+++.+.+.+.|
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d 97 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLS 97 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcC
Confidence 45577888877766544221 11 123455566788889999999999999988866555 233567888889999
Q ss_pred CChHHHHHHHHHHhcCC---hh---------hhHHHHHHHHHhhcCC-CChHHHHHHHHHHHHHhhhcCCcccC--CCch
Q 004394 112 EDPMIRGLALRSLCSLR---VA---------NLVEYLVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPTCID--ADFP 176 (756)
Q Consensus 112 ~Np~iR~LALrtLs~I~---~~---------ei~e~l~~~v~~~L~d-~~pyVRKkAalal~kl~~~~p~~~~~--~~~i 176 (756)
+++.+|..|..+++.+. .+ ...+.+++.+.+++.| +++.||..|+.++..+....++.+.. +.++
T Consensus 98 ~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll 177 (1230)
T 1u6g_C 98 DKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSIL 177 (1230)
T ss_dssp SSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 99999988888887763 12 2678899999999984 88999999999999999876665421 2344
Q ss_pred HHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChh----HHHHHHHHHHhhC
Q 004394 177 PTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEW----AQCLVLELVAKYV 252 (756)
Q Consensus 177 ~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W----~Qi~IL~lL~~y~ 252 (756)
+.+... +.|+++.|...|+.++..+....+.. .+ ...+..|++.+...++| .-+..+..+....
T Consensus 178 ~~l~~~-L~~~~~~vR~~a~~al~~l~~~~~~~----------~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 178 TCLLPQ-LTSPRLAVRKRTIIALGHLVMSCGNI----------VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHHGGG-GGCSSHHHHHHHHHHHHHHTTTC--------------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HHHHHH-HcCCcHHHHHHHHHHHHHHHHhcCHH----------HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHh
Confidence 556665 57999999999999999987644321 11 12455666666544333 1244444444433
Q ss_pred CCCh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHhhcC-----------------
Q 004394 253 PLDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM-TDVHQQVYERIKAPLLTLVSS----------------- 313 (756)
Q Consensus 253 p~d~-~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~-~~~~~~~l~rl~~~L~~LLss----------------- 313 (756)
+..- .....+++.+...++..+..|.-.|..++..+.... .++ ...+..+.+.+...+..
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~ 324 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEV-YPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD 324 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCC-HHHHHHHHHHHTTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHH-HHhHHHHHHHHHHHhCCCCCCCCccccccccccc
Confidence 3210 112357777777777776665555555444332211 112 12345555555554431
Q ss_pred --------------------CCcchHHHHHHHHHHHHhhCCcccccccce----e-eecCCCCHHHHHHHHHHHHHhcCC
Q 004394 314 --------------------GSPEQSYAVLSHLHILVMRAPFIFASDYKH----F-YCQYNEPSYVKKLKLEMLTAVANE 368 (756)
Q Consensus 314 --------------------~~~nirYvaL~~l~~L~~~~p~lf~~~~~~----f-~c~~~dp~~IK~~kLdIL~~L~n~ 368 (756)
...++|..+...+..++...|..|.+++.. + .+..+....||...++.+..++..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 404 (1230)
T 1u6g_C 325 ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQ 404 (1230)
T ss_dssp --------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 112468999999999988777655544322 1 122444578999999887766532
Q ss_pred C---------------------CHHH----HHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHh
Q 004394 369 S---------------------NTYE----IVTELCEYAANVDIPIARESIRAVGKIALQQYD-----VNAIVDRLLQFL 418 (756)
Q Consensus 369 ~---------------------Nv~~----Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~-----~~~~vd~Ll~LL 418 (756)
. -+.. |++-+...+.+.+...+..++..++.++...++ ...++..+++.|
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L 484 (1230)
T 1u6g_C 405 TRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSL 484 (1230)
T ss_dssp HCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHT
T ss_pred hccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHH
Confidence 1 1223 344444457788888888999999999987653 134677777777
Q ss_pred hhcCc--hhhHHHHHHHHHHHhhCC-CcchHHH-HHHHHhhhccC--CchhHHHHHHhHhccCCCCC------------C
Q 004394 419 EMEKD--YVTAEALVLVKDLLRKYP-QWSHDCI-AVVGSISSQNV--QEPKAKAALIWMLGEYSQDM------------Q 480 (756)
Q Consensus 419 ~~~~~--~v~~E~i~~i~~Il~~~p-~~~~~~~-~~l~~l~~~~i--~~p~ak~a~iWiLGEy~~~i------------~ 480 (756)
..... .+..+++..+..++.... +.....+ .++..++ ..+ ..+..+..+++.+|+....+ +
T Consensus 485 ~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~-~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~ 563 (1230)
T 1u6g_C 485 NDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVV-ACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATP 563 (1230)
T ss_dssp TCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHH-HHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHH
Confidence 76543 677777777777776443 3111111 1122221 111 23344444455555443211 1
Q ss_pred ChHHHHHHHhhhh--ccCChHHHHHHHHHHhhHhhhcC
Q 004394 481 DAPYILESLTENW--EEEPSAEVRLHLLTAVMKCFFKR 516 (756)
Q Consensus 481 ~~~~iL~~l~~~f--~~e~~~~Vq~~lLtA~~Kl~~~~ 516 (756)
-.+.++..++..+ .+.+ .++|...+.++..+....
T Consensus 564 ~~~~ll~~ll~~l~~~d~~-~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 564 YIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNL 600 (1230)
T ss_dssp HHHHHHHHHHHHHSCSSSC-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHh
Confidence 1345677777777 5556 889998888888776554
No 26
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.30 E-value=2.6e-09 Score=128.14 Aligned_cols=471 Identities=12% Similarity=0.048 Sum_probs=280.3
Q ss_pred hhhccCCChhhHHHHHHHHHHccccCChHH----H-HHHHHHHHHcCCCChHHHHHHHHHHhcCChhh------------
Q 004394 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLA----L-LTINFLQRDCKDEDPMIRGLALRSLCSLRVAN------------ 131 (756)
Q Consensus 69 i~l~~s~d~~~KkL~YLyl~~~~~~~~el~----l-L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e------------ 131 (756)
..++..++...|+.++-.+..+....++.. . -++..+.+-+.+.++.+|..|+.+++.+....
T Consensus 223 ~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 223 CEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 345667788888888888887776655431 1 34556666678899999999998887764321
Q ss_pred ---------------hHHHHHHHHHhhcC-------CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCCh
Q 004394 132 ---------------LVEYLVGPLGLGLK-------DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDP 189 (756)
Q Consensus 132 ---------------i~e~l~~~v~~~L~-------d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~ 189 (756)
..+.+++.+.+.+. |.++.||+.|+.|+..+....++.+. +.+.+.+... +.|+++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~-~~~l~~l~~~-l~~~~~ 380 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEH-IKNPDW 380 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH-HHHHHHHHHH-TTCSSH
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhH-HHHHHHHHHH-ccCCCh
Confidence 23556666767664 45789999999999999887765432 3456677776 689999
Q ss_pred hHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCC------ChhHHHHHH
Q 004394 190 QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPL------DSNEIFDIM 263 (756)
Q Consensus 190 ~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~------d~~e~~~il 263 (756)
.|..+|+.++..+....+. +... . ....++..++..+.+.++..+...+..+.+++.. .......++
T Consensus 381 ~~r~~a~~~l~~i~~~~~~---~~~~---~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPEP---SQLK---P-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp HHHHHHHHHHHHTSSSSCH---HHHH---H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCH---HHHH---H-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHH
Confidence 9999999999998753220 0000 0 1133566777788888888888888888876532 223456778
Q ss_pred HHHHHHhcccchHHHHHHHHHHHhhcccc---------------chhHHHHHHHHHHHHHHhhcCC---CcchHHHHHHH
Q 004394 264 NLLEDRLQHANGAVVLSTIKVFLHLTLSM---------------TDVHQQVYERIKAPLLTLVSSG---SPEQSYAVLSH 325 (756)
Q Consensus 264 ~~l~~~L~~~n~aVvleaik~ii~l~~~~---------------~~~~~~~l~rl~~~L~~LLss~---~~nirYvaL~~ 325 (756)
+.+...+++. +.|...|++++..+.... ..+. ..+..+.+.|..++... +.++|-.+++.
T Consensus 454 ~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~ 531 (876)
T 1qgr_A 454 QCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-SSFELIVQKLLETTDRPDGHQNNLRSSAYES 531 (876)
T ss_dssp HHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHH
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-HhHHHHHHHHHHHHhCcCcchhhHHHHHHHH
Confidence 8888888764 777777777766543210 0011 12344555555555432 23555555555
Q ss_pred HHHHHhhC--------------------------------------------------------C-ccccccccee----
Q 004394 326 LHILVMRA--------------------------------------------------------P-FIFASDYKHF---- 344 (756)
Q Consensus 326 l~~L~~~~--------------------------------------------------------p-~lf~~~~~~f---- 344 (756)
+..++... + .-+.++...+
T Consensus 532 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l 611 (876)
T 1qgr_A 532 LMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASL 611 (876)
T ss_dssp HHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHH
T ss_pred HHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHH
Confidence 54444332 2 2222222111
Q ss_pred -eecCCCC--HHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHhhhC-CHHHHHHHHHHHHHHHhhcCC-h----hH
Q 004394 345 -YCQYNEP--SYVKKLKLEMLTAVANE------SNTYEIVTELCEYAANV-DIPIARESIRAVGKIALQQYD-V----NA 409 (756)
Q Consensus 345 -~c~~~dp--~~IK~~kLdIL~~L~n~------~Nv~~Iv~EL~~Yl~~~-D~~~~~~~I~aIg~lA~k~~~-~----~~ 409 (756)
-+..+.. .++|...+..+..++.. .-+..++..|...+.+. +.+++..++..+|.++..... . ..
T Consensus 612 ~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 691 (876)
T 1qgr_A 612 LRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE 691 (876)
T ss_dssp HHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 0111211 36788888888777642 23566777777777776 778888888888888876532 2 23
Q ss_pred HHHHHHHHhhhc--CchhhHHHHHHHHHHHhhCCCcch-H---HHHHHHHhhhccC--Cch-------hHHHHHH-----
Q 004394 410 IVDRLLQFLEME--KDYVTAEALVLVKDLLRKYPQWSH-D---CIAVVGSISSQNV--QEP-------KAKAALI----- 469 (756)
Q Consensus 410 ~vd~Ll~LL~~~--~~~v~~E~i~~i~~Il~~~p~~~~-~---~~~~l~~l~~~~i--~~p-------~ak~a~i----- 469 (756)
++..+++.+... ...+...++..+.+|....+.... + ++..+.+...... .++ ..+.++.
T Consensus 692 i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~ 771 (876)
T 1qgr_A 692 VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTG 771 (876)
T ss_dssp HHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 555566666542 235777777778887765543322 1 2222222221111 111 2332222
Q ss_pred --hHhccCC-------CCC-CChHHHHHHHhhhhccCC-hHHHHHHHHHHhhHhhhcCCh-hhH-----HHHHHHHHhhh
Q 004394 470 --WMLGEYS-------QDM-QDAPYILESLTENWEEEP-SAEVRLHLLTAVMKCFFKRPP-ETQ-----KVLGAALAAGL 532 (756)
Q Consensus 470 --WiLGEy~-------~~i-~~~~~iL~~l~~~f~~e~-~~~Vq~~lLtA~~Kl~~~~p~-e~~-----~~l~~vL~~~~ 532 (756)
-.+|+.. ..+ +-.+.++..+.....+.. +..||...+.++.++....+. +.. .++..++..+.
T Consensus 772 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~~~l 851 (876)
T 1qgr_A 772 IVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLTEGR 851 (876)
T ss_dssp HHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHHHHH
T ss_pred HHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHHHHh
Confidence 2344421 111 123455543333323331 378999999999998766654 333 34555666566
Q ss_pred cCCChHHHhHHHHHHHHh
Q 004394 533 ADFHQDVHDRALFYHRLL 550 (756)
Q Consensus 533 ~d~d~dVrdRA~~Y~rLL 550 (756)
.|.++++|+-|..-...+
T Consensus 852 ~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 852 RSKTNKAKTLARWATKEL 869 (876)
T ss_dssp HCSCHHHHHHHHHHHHHH
T ss_pred hcCCHhHHHHHHHHHHHH
Confidence 788999999988765543
No 27
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.30 E-value=6e-11 Score=123.86 Aligned_cols=254 Identities=14% Similarity=0.040 Sum_probs=151.0
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
+++.+.+.|.|+|+.+|..|+++|+.++.++. ++.+.+++.|+++.||..|+.++.++... ++.+ ..+++.|.
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~----~~~L~~~l~d~~~~vR~~A~~aL~~l~~~-~~~~--~~l~~~L~ 96 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGGQDA----VRLAIEFCSDKNYIRRDIGAFILGQIKIC-KKCE--DNVFNILN 96 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHH----HHHHHHHHTCSSHHHHHHHHHHHHHSCCC-TTTH--HHHHHHHH
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCCchH----HHHHHHHHcCCCHHHHHHHHHHHHHhccc-cccc--hHHHHHHH
Confidence 46889999999999999999999999997654 55677889999999999999999887532 2222 22344555
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH
Q 004394 181 HLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF 260 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~ 260 (756)
+.+++|+|+.|..+|+.+|..+...++.. .+..+..|...+.+.+++.+...+..|..+...
T Consensus 97 ~~~~~d~~~~vr~~a~~aL~~l~~~~~~~------------~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~------ 158 (280)
T 1oyz_A 97 NMALNDKSACVRATAIESTAQRCKKNPIY------------SPKIVEQSQITAFDKSTNVRRATAFAISVINDK------ 158 (280)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHHHCGGG------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhccCCcc------------cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH------
Confidence 43468999999999999999986533210 112334444455555666666555555554321
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccc
Q 004394 261 DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASD 340 (756)
Q Consensus 261 ~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~ 340 (756)
..++.+...+++.++.|...|+..+..+....+ .+.+.|..++.+.+
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------~~~~~L~~~l~d~~------------------------- 205 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------DIRDCFVEMLQDKN------------------------- 205 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH--------HHHHHHHHHTTCSC-------------------------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH--------HHHHHHHHHhcCCC-------------------------
Confidence 133444445555555555555555544432111 12233444444444
Q ss_pred cceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhh
Q 004394 341 YKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEM 420 (756)
Q Consensus 341 ~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~ 420 (756)
..+|..++..|-.+.++..+..+ .+.+.+.+ ++..++.++|.++.. .++..|.+++..
T Consensus 206 -----------~~vR~~A~~aL~~~~~~~~~~~L----~~~l~d~~--vr~~a~~aL~~i~~~-----~~~~~L~~~l~~ 263 (280)
T 1oyz_A 206 -----------EEVRIEAIIGLSYRKDKRVLSVL----CDELKKNT--VYDDIIEAAGELGDK-----TLLPVLDTMLYK 263 (280)
T ss_dssp -----------HHHHHHHHHHHHHTTCGGGHHHH----HHHHTSSS--CCHHHHHHHHHHCCG-----GGHHHHHHHHTT
T ss_pred -----------HHHHHHHHHHHHHhCCHhhHHHH----HHHhcCcc--HHHHHHHHHHhcCch-----hhhHHHHHHHhc
Confidence 44555555555555544333333 33333333 666777777776542 345666776654
Q ss_pred c-CchhhHHHHHHHH
Q 004394 421 E-KDYVTAEALVLVK 434 (756)
Q Consensus 421 ~-~~~v~~E~i~~i~ 434 (756)
. .+.+..+++.+++
T Consensus 264 ~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 264 FDDNEIITSAIDKLK 278 (280)
T ss_dssp SSCCHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHhh
Confidence 3 3345555555443
No 28
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.21 E-value=2.9e-09 Score=117.70 Aligned_cols=190 Identities=12% Similarity=0.075 Sum_probs=129.4
Q ss_pred hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc-CC-cccCCCchHHHHHhHhcCC--ChhHHHHHHHHHHHHHhh
Q 004394 130 ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-AP-TCIDADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSL 205 (756)
Q Consensus 130 ~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~-p~-~~~~~~~i~~L~~lLL~D~--d~~Vv~~Al~aL~eI~~~ 205 (756)
++.-+.+-..+...|.++++.| ++++.++..+.+.+ |+ .. +++++.|... +.++ |+.+...|+.+|..+.+.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w--~~ll~~L~~~-l~~~~~~~~~r~~al~~l~~l~~~ 160 (462)
T 1ibr_B 85 ANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQW--PELIPQLVAN-VTNPNSTEHMKESTLEAIGYICQD 160 (462)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCC--TTHHHHHHHH-HHCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccccc--HHHHHHHHHH-hccCCCCHHHHHHHHHHHHHHHHh
Confidence 4455666677778889999999 99999999999864 53 32 6677888887 5777 899999999999888653
Q ss_pred c-ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccc--chHHHHHHH
Q 004394 206 E-ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--NGAVVLSTI 282 (756)
Q Consensus 206 ~-~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~--n~aVvleai 282 (756)
. +. .+ ......+++.+...+++. +..|..+|+
T Consensus 161 ~~~~-----------~~----------------------------------~~~~~~ll~~l~~~l~~~~~~~~vr~~a~ 195 (462)
T 1ibr_B 161 IDPE-----------QL----------------------------------QDKSNEILTAIIQGMRKEEPSNNVKLAAT 195 (462)
T ss_dssp SCGG-----------GT----------------------------------GGGHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CCch-----------hh----------------------------------HhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 2 10 00 011223556666667666 677888888
Q ss_pred HHHHhhccccch-hH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccc-eee-----ecCCCCHHH
Q 004394 283 KVFLHLTLSMTD-VH-QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYK-HFY-----CQYNEPSYV 354 (756)
Q Consensus 283 k~ii~l~~~~~~-~~-~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~-~f~-----c~~~dp~~I 354 (756)
+++..+.....+ .. .....-+.+.|..++.+.++++|-.+++.+..++..+|..|.+|+. .++ +..+++..+
T Consensus 196 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v 275 (462)
T 1ibr_B 196 NALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEV 275 (462)
T ss_dssp HHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 887764322111 00 0011123445556777788999999999999999999988887766 332 334666788
Q ss_pred HHHHHHHHHHhcCC
Q 004394 355 KKLKLEMLTAVANE 368 (756)
Q Consensus 355 K~~kLdIL~~L~n~ 368 (756)
|..+++.+..++..
T Consensus 276 ~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 276 ALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887653
No 29
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.18 E-value=4.9e-09 Score=119.65 Aligned_cols=296 Identities=14% Similarity=0.120 Sum_probs=203.5
Q ss_pred HHHHHHhhcCC-CChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 136 LVGPLGLGLKD-NNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 136 l~~~v~~~L~d-~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
++|.+.++|.+ .+|.|+..|+.|+..+-..+++. +.+.+.++.|.++ |.++|+.|...|+.+|..|+..++.
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~l-L~s~~~~v~e~A~~aL~nLa~d~~~--- 176 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGDGSA--- 176 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHH---
Confidence 57778888864 56899999999999987655542 3456788899887 6899999999999999999865442
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccCC-----hhHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHHhcccchHHHHHH
Q 004394 212 EASREREALISKPVIYYLLNRIKEFS-----EWAQCLVLELVAKYVPLD-----SNEIFDIMNLLEDRLQHANGAVVLST 281 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~~-----~W~Qi~IL~lL~~y~p~d-----~~e~~~il~~l~~~L~~~n~aVvlea 281 (756)
+++ .++....+..|+..+...+ ...+..+...+...+... ......++..+..+|++.+..|...|
T Consensus 177 --~r~--~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A 252 (510)
T 3ul1_B 177 --FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 252 (510)
T ss_dssp --HHH--HHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred --HHH--HHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence 111 1111223455666554432 233444555555554321 12345678888889999999999999
Q ss_pred HHHHHhhccccchhHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc----ccccc-ccee-eecCCCCHHH
Q 004394 282 IKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQYNEPSYV 354 (756)
Q Consensus 282 ik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~----lf~~~-~~~f-~c~~~dp~~I 354 (756)
+.++.++.....+..+.+. ..+.+.|+.+|.+.+++++.-+++.+..|+...+. ++... +..+ -+..+.+..|
T Consensus 253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v 332 (510)
T 3ul1_B 253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 332 (510)
T ss_dssp HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence 9999998765433222222 23456788999999999999999999988765432 12211 1222 2345677889
Q ss_pred HHHHHHHHHHhcCC--CCHHH-----HHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC--h-----hHHHHHHHHHhhh
Q 004394 355 KKLKLEMLTAVANE--SNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQYD--V-----NAIVDRLLQFLEM 420 (756)
Q Consensus 355 K~~kLdIL~~L~n~--~Nv~~-----Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~--~-----~~~vd~Ll~LL~~ 420 (756)
|..+...|..|+.. .+... ++.-|.+.+.+.|.+++++++.+|+.++..-.. . ..++..|+++|+.
T Consensus 333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~ 412 (510)
T 3ul1_B 333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 412 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC
Confidence 99999999999743 23332 466788888899999999999999999875321 1 1357788888887
Q ss_pred cCchhhHHHHHHHHHHHhh
Q 004394 421 EKDYVTAEALVLVKDLLRK 439 (756)
Q Consensus 421 ~~~~v~~E~i~~i~~Il~~ 439 (756)
....+..-++..+.+|++.
T Consensus 413 ~d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 413 KDTKIIQVILDAISNIFQA 431 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 7767777777777777753
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.17 E-value=5.8e-09 Score=117.91 Aligned_cols=420 Identities=11% Similarity=0.054 Sum_probs=258.9
Q ss_pred hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhh
Q 004394 129 VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 129 ~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
.+++....++.+.++|.++++.||..|+.++.++....+.. +..++.++.|.++|.++.|+.+...|+.+|..+...
T Consensus 11 ~~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 11 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ------CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 34555667888999999999999999999999998654321 112356777878743456899999999999998653
Q ss_pred cccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH-----HHHHHHHHHHhcccchHHHHH
Q 004394 206 EASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI-----FDIMNLLEDRLQHANGAVVLS 280 (756)
Q Consensus 206 ~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~-----~~il~~l~~~L~~~n~aVvle 280 (756)
.. . +..+.....+..|+..+.+.++-.|...+..|...+..+++.. ...++.+..+|++.+..+...
T Consensus 91 ~~-----~---~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 91 RE-----G---LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp HH-----H---HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred ch-----h---HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 21 0 1112222356778888888888889999999988764332221 346777888888888888777
Q ss_pred HHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCc-chHHHHHHHHHHHHhhCCc----ccccc-ccee-eecCCCCH
Q 004394 281 TIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSP-EQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQYNEPS 352 (756)
Q Consensus 281 aik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~-nirYvaL~~l~~L~~~~p~----lf~~~-~~~f-~c~~~dp~ 352 (756)
++.++..+....++.+..+.+ ...+.|+.++.+.++ ..++.+...+..+.. .|. +.... +..+ -+..+.+.
T Consensus 163 ~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~ 241 (529)
T 1jdh_A 163 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQ 241 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCCh
Confidence 777776665433333332222 245567788865544 455666666655543 332 11111 1111 12345567
Q ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh------hHHHHHHHHHhhhcC
Q 004394 353 YVKKLKLEMLTAVANES----NTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDV------NAIVDRLLQFLEMEK 422 (756)
Q Consensus 353 ~IK~~kLdIL~~L~n~~----Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~------~~~vd~Ll~LL~~~~ 422 (756)
.+++..+..|..|+... ....++..|.+.+.+.|.+.+..++.+++.++...++. ...++.+++++....
T Consensus 242 ~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 242 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 89999999999998643 45678899999999999999999999999998653321 135788999998644
Q ss_pred --chhhHHHHHHHHHHHhhCCCc---chH-----HHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChH-----HHHH
Q 004394 423 --DYVTAEALVLVKDLLRKYPQW---SHD-----CIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAP-----YILE 487 (756)
Q Consensus 423 --~~v~~E~i~~i~~Il~~~p~~---~~~-----~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~-----~iL~ 487 (756)
..+...++..+.++....|+. +.. .+..+.+++. +-.++..+..++|.+|..+..-.+-. .++.
T Consensus 322 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~ 400 (529)
T 1jdh_A 322 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH-PPSHWPLIKATVGLIRNLALCPANHAPLREQGAIP 400 (529)
T ss_dssp TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS-TTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc-cccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHH
Confidence 467777888889887766652 211 1223334432 22235778888999999875432211 1222
Q ss_pred HHhhhhccCC---------------------hHHHHHHHHHHhhHhhhcCChhhHHHHH-----HHHHhhhcCCChHHHh
Q 004394 488 SLTENWEEEP---------------------SAEVRLHLLTAVMKCFFKRPPETQKVLG-----AALAAGLADFHQDVHD 541 (756)
Q Consensus 488 ~l~~~f~~e~---------------------~~~Vq~~lLtA~~Kl~~~~p~e~~~~l~-----~vL~~~~~d~d~dVrd 541 (756)
.+++.+...+ +.+++...+.++..+.. .+ +.+..+. ..|-....+.+++||.
T Consensus 401 ~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~-~~~~~l~~~~~v~~l~~ll~~~~~~v~~ 478 (529)
T 1jdh_A 401 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DV-HNRIVIRGLNTIPLFVQLLYSPIENIQR 478 (529)
T ss_dssp HHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SH-HHHHHHHHTTCHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-Cc-hHHHHHhccCCccHHHHHHcCCchHHHH
Confidence 2222222111 13344455666666542 22 2221111 2333345677899999
Q ss_pred HHHHHHHHhcCCHHHHHhh
Q 004394 542 RALFYHRLLQYNVSVAERV 560 (756)
Q Consensus 542 RA~~Y~rLL~~~~e~a~~v 560 (756)
.|..-..-+..+++..+.+
T Consensus 479 ~a~~~l~~l~~~~~~~~~i 497 (529)
T 1jdh_A 479 VAAGVLCELAQDKEAAEAI 497 (529)
T ss_dssp HHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHH
Confidence 9987655455555544443
No 31
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.14 E-value=3.1e-08 Score=118.22 Aligned_cols=394 Identities=14% Similarity=0.096 Sum_probs=264.4
Q ss_pred hccCCChhhHHHHHHHHHHccccCChHHHH------HHHHHHHHcCCCChHHHHHHHHHHhcCChhh-----hHHHHHHH
Q 004394 71 CSATSDIVLKKMCYLYVGNYAKVNPDLALL------TINFLQRDCKDEDPMIRGLALRSLCSLRVAN-----LVEYLVGP 139 (756)
Q Consensus 71 l~~s~d~~~KkL~YLyl~~~~~~~~el~lL------~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-----i~e~l~~~ 139 (756)
.+..++...|-.+.-+++.++.-.+|..-- ++..|.+=+.++++.++.-|+.+++.+.... +.+.-++.
T Consensus 255 ~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~ 334 (810)
T 3now_A 255 KLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDI 334 (810)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred HhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence 456788888888888999999888886442 3678888889999999999988888876533 34444589
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhh---cCC--cccC---CCchHHHHHhHhcCC--ChhHHHHHHHHHHHHHhhcccc
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLKLYHI---SAP--TCID---ADFPPTLKHLMLNDP--DPQVVANCLSALQEIWSLEAST 209 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~kl~~~---~p~--~~~~---~~~i~~L~~lLL~D~--d~~Vv~~Al~aL~eI~~~~~~~ 209 (756)
+..++.+.++.||..|+.++.|+-.. ++. .+.+ +.+++.+.++| .++ |+.|+.+|+-+|.++.....
T Consensus 335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL-~~~~~d~~v~~~AveaLayLS~~~~-- 411 (810)
T 3now_A 335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFL-IKPGKDKDIRRWAADGLAYLTLDAE-- 411 (810)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHH-HCSSCCSSHHHHHHHHHHHHTTSHH--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCcH--
Confidence 99999999999999999999999642 222 2211 12356677874 555 89999999999999965321
Q ss_pred hhHHHHHHHhh-ccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCCh-h---------------------------HHH
Q 004394 210 SEEASREREAL-ISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-N---------------------------EIF 260 (756)
Q Consensus 210 ~~~~~~~~~~l-l~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~-~---------------------------e~~ 260 (756)
.+ ..+ .+...+..|+..++..++=.|-..+..|..+....+ + ...
T Consensus 412 ---vk---~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~ 485 (810)
T 3now_A 412 ---CK---EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFIN 485 (810)
T ss_dssp ---HH---HHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHH
T ss_pred ---HH---HHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHH
Confidence 11 112 234567788888877788889999999988875321 0 011
Q ss_pred ---------HHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 004394 261 ---------DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (756)
Q Consensus 261 ---------~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~ 330 (756)
..+..+..+|++.++.|.-+|++++.++..+ ++.+..+++ .+.++|+.+|.++++..|-.+..+|..|+
T Consensus 486 ~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~ 564 (810)
T 3now_A 486 KRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG 564 (810)
T ss_dssp HHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 1356677788999999999999999999753 334444443 36688999999999999999999999887
Q ss_pred hh-CCcc-cccc-----ccee-eecCCC-CHHHHHHHHHHHHHhcCC--CCHHHH-----HHHHHHHhhhCCHHHHHHHH
Q 004394 331 MR-APFI-FASD-----YKHF-YCQYNE-PSYVKKLKLEMLTAVANE--SNTYEI-----VTELCEYAANVDIPIARESI 394 (756)
Q Consensus 331 ~~-~p~l-f~~~-----~~~f-~c~~~d-p~~IK~~kLdIL~~L~n~--~Nv~~I-----v~EL~~Yl~~~D~~~~~~~I 394 (756)
.. +|.. |..+ +..+ ..+.++ +...+..++.-|..|+.. +|...| ++.|.+++.+.+..+++.+.
T Consensus 565 ~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~ 644 (810)
T 3now_A 565 ITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAA 644 (810)
T ss_dssp HHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHH
T ss_pred cCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHH
Confidence 64 4542 3211 1111 122333 455667888899998864 344444 44677888888888999999
Q ss_pred HHHHHHHhhcCCh------hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcch------HHHHHHHHhhhccCCch
Q 004394 395 RAVGKIALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSH------DCIAVVGSISSQNVQEP 462 (756)
Q Consensus 395 ~aIg~lA~k~~~~------~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~------~~~~~l~~l~~~~i~~p 462 (756)
.+|+.++..-... ...+..|+.|+......+..++...+.+|...+++... ..+..+.+++. -.++
T Consensus 645 ~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~--s~d~ 722 (810)
T 3now_A 645 QCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA--NPSP 722 (810)
T ss_dssp HHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT--CSSH
T ss_pred HHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC--CCCH
Confidence 9999887531110 12455666666665555555555556555543333211 12233334432 2455
Q ss_pred hHHHHHHhHhccCC
Q 004394 463 KAKAALIWMLGEYS 476 (756)
Q Consensus 463 ~ak~a~iWiLGEy~ 476 (756)
+.+..++|.++...
T Consensus 723 ~vq~~A~~aL~NL~ 736 (810)
T 3now_A 723 AVQHRGIVIILNMI 736 (810)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666667666543
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.12 E-value=6.8e-09 Score=105.17 Aligned_cols=227 Identities=16% Similarity=0.081 Sum_probs=174.9
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhHH-----HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---cc
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE-----YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CI 171 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~e-----~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~ 171 (756)
+..+.+-+.++|+.+|..|+++++++.. ++..+ ..++.+.++|.++++.||..|+.++..+...+++. +.
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 83 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 83 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 5678888899999999999999988732 22222 36788999999999999999999999998754442 23
Q ss_pred CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 172 ~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y 251 (756)
+.+.++.|.++ +.+.|+.|..+|+.+|..+...++.. . ..++....+..|+..+.+.++..+...+..|..+
T Consensus 84 ~~~~i~~l~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~----~---~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 84 DAGGVEVLVKL-LTSTDSEVQKEAARALANIASGPDEA----I---KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HTTHHHHHHHH-TTCSSHHHHHHHHHHHHHHTTSCHHH----H---HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHcCCHHH----H---HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 45778899897 68999999999999999998644321 1 1122223577888888899999999999999999
Q ss_pred CCCChhHHH-----HHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHH-HHHHHHHHHhhcCCCcchHHHHHHH
Q 004394 252 VPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSH 325 (756)
Q Consensus 252 ~p~d~~e~~-----~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~~~nirYvaL~~ 325 (756)
...++.... ..++.+..++++.+..|...|+.++..+....++..+.+. ..+.+.|+.++.++++++|..++..
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 876654332 2567888899999999999999999998764444333332 2355678899999999999999999
Q ss_pred HHHHHhhCCcc
Q 004394 326 LHILVMRAPFI 336 (756)
Q Consensus 326 l~~L~~~~p~l 336 (756)
|..|....+.-
T Consensus 236 L~~l~~~~~~~ 246 (252)
T 4hxt_A 236 LENIKSGGWLE 246 (252)
T ss_dssp HHHHHHTCBCC
T ss_pred HHHHHcCCCcc
Confidence 99999876643
No 33
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.12 E-value=1.3e-09 Score=108.71 Aligned_cols=185 Identities=19% Similarity=0.171 Sum_probs=142.8
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHH
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKH 181 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~ 181 (756)
+..+.+.|.|+|+.+|..|++.|+.++.++.++ .+.+.|.|+++.||..|+.++.++.. ++.++.|.+
T Consensus 21 ~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~ 88 (211)
T 3ltm_A 21 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIK 88 (211)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHH
Confidence 577778888999999999999999998876554 45677889999999999999988752 345777888
Q ss_pred hHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH
Q 004394 182 LMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (756)
Q Consensus 182 lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~ 261 (756)
+ +.|+|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+... .
T Consensus 89 ~-l~~~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~ 143 (211)
T 3ltm_A 89 A-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE------R 143 (211)
T ss_dssp H-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------G
T ss_pred H-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH------H
Confidence 7 6999999999999999887431 1244566677889999999999999988532 2
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhC
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRA 333 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~ 333 (756)
.++.+...+++.++.|..+|+.++..+.. ..+.+.|..+++++++++|..+.+.|..+....
T Consensus 144 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 144 AVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 45677778888899999999999988753 123455777788888999999999988766544
No 34
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.11 E-value=2e-08 Score=117.58 Aligned_cols=387 Identities=10% Similarity=0.114 Sum_probs=248.8
Q ss_pred hhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC--ChhhhHHHHHHHHHhhcCCCChHHHHHH
Q 004394 78 VLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--RVANLVEYLVGPLGLGLKDNNSYVRTVA 155 (756)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I--~~~ei~e~l~~~v~~~L~d~~pyVRKkA 155 (756)
.++|+.|+...-+ .-+.+..-++ |=+.++|...|-++--+++.+ ..++++-.++..+++-|+|++|+||--|
T Consensus 58 ~l~Kli~l~~~G~--d~s~~~~~vv----kl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lA 131 (621)
T 2vgl_A 58 YVCKLLFIFLLGH--DIDFGHMEAV----NLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLA 131 (621)
T ss_dssp HHHHHHHHHHHSC--CCCSCHHHHH----HGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHcCC--CCchhHHHHH----HHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4789999877544 3334333333 356789999987776666665 3467888889999999999999999999
Q ss_pred HHHHHHHhhhcCCcccCCCchHHHHHhHh--cCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHh
Q 004394 156 VIGVLKLYHISAPTCIDADFPPTLKHLML--NDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRI 233 (756)
Q Consensus 156 alal~kl~~~~p~~~~~~~~i~~L~~lLL--~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l 233 (756)
+-++.++. .|+.+ +.+.+.+.++ + .|++|-|.-.|+.++..+.+.+|+... . ...+.++...+
T Consensus 132 Lr~L~~i~--~~e~~--~~l~~~v~~~-l~~~d~~~~VRK~A~~al~kl~~~~p~~~~----~------~~~~~~l~~lL 196 (621)
T 2vgl_A 132 LHCIANVG--SREMA--EAFAGEIPKI-LVAGDTMDSVKQSAALCLLRLYRTSPDLVP----M------GDWTSRVVHLL 196 (621)
T ss_dssp HHHHHHHC--CHHHH--HHHTTHHHHH-HHCSSSCHHHHHHHHHHHHHHHHHCGGGCC----C------CSCHHHHHHHT
T ss_pred HHHhhccC--CHHHH--HHHHHHHHHH-HhCCCCCHHHHHHHHHHHHHHHHhChhhcC----c------hhHHHHHHHHh
Confidence 99999884 46666 5677888887 7 899999999999999999887765211 0 02355666777
Q ss_pred ccCChhHHHHHHHHHHhhCCCChhHHHH----HHHHHHHHhccc-------------chHHHHHHHHHHHhhccc-cchh
Q 004394 234 KEFSEWAQCLVLELVAKYVPLDSNEIFD----IMNLLEDRLQHA-------------NGAVVLSTIKVFLHLTLS-MTDV 295 (756)
Q Consensus 234 ~~~~~W~Qi~IL~lL~~y~p~d~~e~~~----il~~l~~~L~~~-------------n~aVvleaik~ii~l~~~-~~~~ 295 (756)
.+.++-.+...+.++...++.+++.... +++.+..++... ++=.....++++..+.+. .++.
T Consensus 197 ~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~ 276 (621)
T 2vgl_A 197 NDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV 276 (621)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH
T ss_pred CCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH
Confidence 8899988888888888877766553222 333444443221 455666677777776653 2333
Q ss_pred HHHHHHHHHHHHHHhhcC---CC-------cch-HHHHHHHHHHHHhhCC--ccccc---ccceeeecCCCCHHHHHHHH
Q 004394 296 HQQVYERIKAPLLTLVSS---GS-------PEQ-SYAVLSHLHILVMRAP--FIFAS---DYKHFYCQYNEPSYVKKLKL 359 (756)
Q Consensus 296 ~~~~l~rl~~~L~~LLss---~~-------~ni-rYvaL~~l~~L~~~~p--~lf~~---~~~~f~c~~~dp~~IK~~kL 359 (756)
.. ++...|-.++++ .. .|. .-+.+..+..++...+ .+... .+..| + .+.+..+|..+|
T Consensus 277 ~~----~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~-L-~~~~~niry~aL 350 (621)
T 2vgl_A 277 RG----RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQF-L-QHRETNLRYLAL 350 (621)
T ss_dssp HH----HHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-S-SCSCHHHHHHHH
T ss_pred HH----HHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-h-cCCCcchHHHHH
Confidence 22 222333333311 10 111 1233333443333332 22211 11122 2 345678999999
Q ss_pred HHHHHhcCCCC----HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHH
Q 004394 360 EMLTAVANESN----TYEIVTELCEYAA-NVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVK 434 (756)
Q Consensus 360 dIL~~L~n~~N----v~~Iv~EL~~Yl~-~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~ 434 (756)
+.|..++.... +......+...+. +.|..+++.++..+..++..- +....+..|++++......+..+++..+.
T Consensus 351 ~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~ 429 (621)
T 2vgl_A 351 ESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS-NAQQIVAEMLSYLETADYSIREEIVLKVA 429 (621)
T ss_dssp HHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-hHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999987653 2333444556667 889999999988887776431 24567888888888877788999999999
Q ss_pred HHHhhCCCcchHHHHHHHHhhhc--cCCchhHHHHHHhHhccCCCCCCChHHHHHHHhhhhcc
Q 004394 435 DLLRKYPQWSHDCIAVVGSISSQ--NVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEE 495 (756)
Q Consensus 435 ~Il~~~p~~~~~~~~~l~~l~~~--~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~~~f~~ 495 (756)
.+..+||.....++..+.+++.. +....++...+.-++.+..+. -.+.+..+++.+.+
T Consensus 430 ~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~---~~~~~~~l~~~l~~ 489 (621)
T 2vgl_A 430 ILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDV---QGYAAKTVFEALQA 489 (621)
T ss_dssp HHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSC---HHHHHHHHHHHHTS
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhH---HHHHHHHHHHHHcC
Confidence 99999998777777777776632 222344444555566554321 24455555555443
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.09 E-value=6.6e-08 Score=113.28 Aligned_cols=399 Identities=13% Similarity=0.054 Sum_probs=254.7
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHccccCChHHH-----HHHHHHHHHcCC-CChHHHHHHHHHHhcCChh-h----hH
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL-----LTINFLQRDCKD-EDPMIRGLALRSLCSLRVA-N----LV 133 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l-----L~iNtl~KDL~s-~Np~iR~LALrtLs~I~~~-e----i~ 133 (756)
.+..++++.+++...|.-+-..+.+++...+.... -++..+.+-|.+ +++.+|..|+++|.++... + +.
T Consensus 16 i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~ 95 (644)
T 2z6h_A 16 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 95 (644)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHH
Confidence 55667788888888898888888888876654321 235667777765 4899999988888876432 2 11
Q ss_pred -HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccc
Q 004394 134 -EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (756)
Q Consensus 134 -e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~ 209 (756)
...++.+.++|.++++.||+.|+.++.++...+++. +.+.+.++.|.++ +.+.++.+...++.+|..+...++..
T Consensus 96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~La~~~~~~ 174 (644)
T 2z6h_A 96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVAL-LNKTNVKFLAITTDCLQILAYGNQES 174 (644)
T ss_dssp TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHH-HCcCCHHHHHHHHHHHHHHHhcCcHH
Confidence 136778899999999999999999999998775432 2246788999997 68889999999888898887533211
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHhccCC-hhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHHHHHHHH
Q 004394 210 SEEASREREALISKPVIYYLLNRIKEFS-EWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIK 283 (756)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~Ll~~l~~~~-~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aVvleaik 283 (756)
+..+.....+..|+..+...+ +-.+...+++|..+... ++... ..+..+..++++.+..+...|+.
T Consensus 175 -------~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~ 246 (644)
T 2z6h_A 175 -------KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246 (644)
T ss_dssp -------HHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred -------HHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 011111224556666665543 33344455555554422 22222 24566777778888899999999
Q ss_pred HHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc----ccccc-ccee-eec-C-CCCHHHH
Q 004394 284 VFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQ-Y-NEPSYVK 355 (756)
Q Consensus 284 ~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~----lf~~~-~~~f-~c~-~-~dp~~IK 355 (756)
++..+....+.. .....+.+.|+.+|.+.+++++..+...|..|....+. ++... +..+ -.. . ++...++
T Consensus 247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~ 324 (644)
T 2z6h_A 247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324 (644)
T ss_dssp HHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHH
Confidence 998876432211 11234667888999999999999999999888765432 11111 1111 111 1 2336899
Q ss_pred HHHHHHHHHhcCCCC----HH------HHHHHHHHHhhhCC-HHHHHHHHHHHHHHHhhcCCh-----hHHHHHHHHHhh
Q 004394 356 KLKLEMLTAVANESN----TY------EIVTELCEYAANVD-IPIARESIRAVGKIALQQYDV-----NAIVDRLLQFLE 419 (756)
Q Consensus 356 ~~kLdIL~~L~n~~N----v~------~Iv~EL~~Yl~~~D-~~~~~~~I~aIg~lA~k~~~~-----~~~vd~Ll~LL~ 419 (756)
..++..|..|+.... .+ ..+.-|.+.+.+.+ .+++++++.+++.++..-... ...+..|++++.
T Consensus 325 ~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~ 404 (644)
T 2z6h_A 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404 (644)
T ss_dssp HHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHh
Confidence 999999999986421 11 24667777777654 689999999999988532211 235677888877
Q ss_pred hcCc----------------------hhhHHHHHHHHHHHhhCCCcchH-----HHHHHHHhhhccCCchhHHHHHHhHh
Q 004394 420 MEKD----------------------YVTAEALVLVKDLLRKYPQWSHD-----CIAVVGSISSQNVQEPKAKAALIWML 472 (756)
Q Consensus 420 ~~~~----------------------~v~~E~i~~i~~Il~~~p~~~~~-----~~~~l~~l~~~~i~~p~ak~a~iWiL 472 (756)
.... .+...++..+..+.+ .++.+.. ++..+.+++. -.+++++..++|.+
T Consensus 405 ~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL 481 (644)
T 2z6h_A 405 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLLY--SPIENIQRVAAGVL 481 (644)
T ss_dssp HHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred ccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-CHHHHHHHHhCCcHHHHHHHHc--CCCHHHHHHHHHHH
Confidence 5321 222333344454442 2222111 2233444442 24567888888998
Q ss_pred ccCCC
Q 004394 473 GEYSQ 477 (756)
Q Consensus 473 GEy~~ 477 (756)
++.+.
T Consensus 482 ~~l~~ 486 (644)
T 2z6h_A 482 CELAQ 486 (644)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 88664
No 36
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.09 E-value=1e-08 Score=117.34 Aligned_cols=295 Identities=13% Similarity=0.121 Sum_probs=203.5
Q ss_pred HHHHHHhhcC-CCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 136 LVGPLGLGLK-DNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 136 l~~~v~~~L~-d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
++|.+.++|. +.++.++..|+.|+..+...+++. +.+.+.++.|..+ +.++|+.|.-.|+.+|..|+..++.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~L-L~s~~~~v~e~A~~aL~nLa~~~~~--- 195 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISL-LASPHAHISEQAVWALGNIAGAGSA--- 195 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCHH---
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhccCHH---
Confidence 5677788885 566999999999999998765542 3457888999997 7999999999999999999875542
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccC-----ChhHHHHHHHHHHhhCCCC-----hhHHHHHHHHHHHHhcccchHHHHHH
Q 004394 212 EASREREALISKPVIYYLLNRIKEF-----SEWAQCLVLELVAKYVPLD-----SNEIFDIMNLLEDRLQHANGAVVLST 281 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~-----~~W~Qi~IL~lL~~y~p~d-----~~e~~~il~~l~~~L~~~n~aVvlea 281 (756)
+.+ .++....+..|+..+... ....+..+...+..++... ......++..+..+|++.+..|...|
T Consensus 196 --~r~--~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a 271 (529)
T 3tpo_A 196 --FRD--LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS 271 (529)
T ss_dssp --HHH--HHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred --HHH--HHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence 111 112222345566655443 2334445555666554321 12345678888899999999999999
Q ss_pred HHHHHhhccccchhHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc----ccccc-ccee-eecCCCCHHH
Q 004394 282 IKVFLHLTLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASD-YKHF-YCQYNEPSYV 354 (756)
Q Consensus 282 ik~ii~l~~~~~~~~~~~l-~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~----lf~~~-~~~f-~c~~~dp~~I 354 (756)
+.++.++.....+..+.+. ..+.+.|+.+|.+.++.++.-+++.+..|+...+. ++... +..+ -+..+.+..|
T Consensus 272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i 351 (529)
T 3tpo_A 272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI 351 (529)
T ss_dssp HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence 9999988765443322222 23556788999999999999999999988765432 11111 1222 2345667889
Q ss_pred HHHHHHHHHHhcCC--CCHHH-----HHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcC-Ch------hHHHHHHHHHhhh
Q 004394 355 KKLKLEMLTAVANE--SNTYE-----IVTELCEYAANVDIPIARESIRAVGKIALQQY-DV------NAIVDRLLQFLEM 420 (756)
Q Consensus 355 K~~kLdIL~~L~n~--~Nv~~-----Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~-~~------~~~vd~Ll~LL~~ 420 (756)
|..+...|..|+.. .+... ++.-|...+.+.+.+++++++.+|+.++..-. +. ..++..|+++|..
T Consensus 352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~ 431 (529)
T 3tpo_A 352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA 431 (529)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC
Confidence 99999999998743 22332 45667888889999999999999999986532 11 1257788888887
Q ss_pred cCchhhHHHHHHHHHHHh
Q 004394 421 EKDYVTAEALVLVKDLLR 438 (756)
Q Consensus 421 ~~~~v~~E~i~~i~~Il~ 438 (756)
....+..-++..+.+|++
T Consensus 432 ~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 432 KDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 766666666666666664
No 37
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.08 E-value=4.3e-09 Score=104.11 Aligned_cols=183 Identities=19% Similarity=0.173 Sum_probs=141.6
Q ss_pred HHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHH
Q 004394 100 LTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTL 179 (756)
Q Consensus 100 L~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L 179 (756)
-....+.+.|.|+|+.+|..|++.|+.++.++.++ .+.+.|.|+++.||..|+.++.++.. ++.++.|
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~----~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~~~~L 81 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVE----PLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPL 81 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHH----HHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHH
Confidence 35678888999999999999999999988866544 56677789999999999999887642 3457778
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHH
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEI 259 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~ 259 (756)
.++ +.|+|+.|...|+.+|..+... ..+..|+..+.+.+++.+...++.|..+...
T Consensus 82 ~~~-l~d~~~~vr~~a~~aL~~~~~~------------------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 137 (201)
T 3ltj_A 82 IKA-LKDEDGWVRQSAAVALGQIGDE------------------RAVEPLIKALKDEDWFVRIAAAFALGEIGDE----- 137 (201)
T ss_dssp HHH-TTCSSHHHHHHHHHHHHHHCCG------------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-----
T ss_pred HHH-HcCCCHHHHHHHHHHHHHhCcH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-----
Confidence 886 6899999999999998887421 1244566667888899999999999888532
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHH
Q 004394 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHIL 329 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L 329 (756)
..++.+...+++.+..|..+|+..+..+... ...+.|..++++.++.+|..+...|..+
T Consensus 138 -~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~----------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 138 -RAVEPLIKALKDEDGWVRQSAADALGEIGGE----------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp -GGHHHHHHHTTCSSHHHHHHHHHHHHHHCSH----------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHhCch----------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2456677788888899999999998887531 2345677778888899999988888755
No 38
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.06 E-value=2.4e-09 Score=111.61 Aligned_cols=252 Identities=13% Similarity=0.008 Sum_probs=173.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHH
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRE 216 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~ 216 (756)
++.+.+.|.|+++.||..|+.++.++.. ++.++.|.++ +.|+|+.|...|+.+|..+...... .
T Consensus 25 i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~-l~d~~~~vR~~A~~aL~~l~~~~~~-----~-- 88 (280)
T 1oyz_A 25 DDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEF-CSDKNYIRRDIGAFILGQIKICKKC-----E-- 88 (280)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHH-HTCSSHHHHHHHHHHHHHSCCCTTT-----H--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHH-HcCCCHHHHHHHHHHHHHhcccccc-----c--
Confidence 4567788899999999999999998752 3457778887 6999999999999999887532110 0
Q ss_pred HHhhccHHHHHHHHH-HhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchh
Q 004394 217 REALISKPVIYYLLN-RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDV 295 (756)
Q Consensus 217 ~~~ll~~~~~~~Ll~-~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~ 295 (756)
...+..|.+ .+.+.+++.+...++.|..+...++.....+++.+...+++.++.|..+|+.++..+....
T Consensus 89 ------~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~~--- 159 (280)
T 1oyz_A 89 ------DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNVRRATAFAISVINDKA--- 159 (280)
T ss_dssp ------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---C---
T ss_pred ------hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCHH---
Confidence 111222221 3567888899999999988865444444567788888889999999999999888775421
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHH
Q 004394 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIV 375 (756)
Q Consensus 296 ~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv 375 (756)
..+.|..++.+.++.+|+.+...+..+.. + -..++
T Consensus 160 -------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------------~---------------------~~~~~ 194 (280)
T 1oyz_A 160 -------TIPLLINLLKDPNGDVRNWAAFAININKY-----------------D---------------------NSDIR 194 (280)
T ss_dssp -------CHHHHHHHHTCSSHHHHHHHHHHHHHHTC-----------------C---------------------CHHHH
T ss_pred -------HHHHHHHHHcCCCHHHHHHHHHHHHhhcc-----------------C---------------------cHHHH
Confidence 24567777888888888888888865420 0 12456
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcchHHHHHHHHhh
Q 004394 376 TELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWSHDCIAVVGSIS 455 (756)
Q Consensus 376 ~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~~~~~~~l~~l~ 455 (756)
..|...+.+.|..++..++.++|.++. ...+..+++++... .|...++..+..+-. +. ++..+.+++
T Consensus 195 ~~L~~~l~d~~~~vR~~A~~aL~~~~~-----~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~--~~----~~~~L~~~l 261 (280)
T 1oyz_A 195 DCFVEMLQDKNEEVRIEAIIGLSYRKD-----KRVLSVLCDELKKN--TVYDDIIEAAGELGD--KT----LLPVLDTML 261 (280)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTTC-----GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC--GG----GHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCC-----HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc--hh----hhHHHHHHH
Confidence 667778888899999999999998862 23667788888763 377777777666532 32 234455554
Q ss_pred hccCCchhHHHHHHhHh
Q 004394 456 SQNVQEPKAKAALIWML 472 (756)
Q Consensus 456 ~~~i~~p~ak~a~iWiL 472 (756)
. +-.+++....++..+
T Consensus 262 ~-~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 262 Y-KFDDNEIITSAIDKL 277 (280)
T ss_dssp T-TSSCCHHHHHHHHHH
T ss_pred h-cCCCcHHHHHHHHHh
Confidence 2 334556655555544
No 39
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.04 E-value=8.3e-08 Score=109.45 Aligned_cols=329 Identities=10% Similarity=0.022 Sum_probs=229.9
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHcc--ccCChH--HHH--HHHHHHHHcC-CCChHHHHHHHHHHhcC--ChhhhHHH
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDL--ALL--TINFLQRDCK-DEDPMIRGLALRSLCSL--RVANLVEY 135 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~--~~~~el--~lL--~iNtl~KDL~-s~Np~iR~LALrtLs~I--~~~ei~e~ 135 (756)
..++++.+.|+|.+.+.-+--.+..++ +.+|.. .+- ++..|.+-|+ +.|+.++.-|..+|++| ++++....
T Consensus 59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~ 138 (510)
T 3ul1_B 59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA 138 (510)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 789999999999988777666665443 344532 221 4778888886 56799998898888887 34443332
Q ss_pred -----HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCCh-----hHHHHHHHHHHHH
Q 004394 136 -----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDP-----QVVANCLSALQEI 202 (756)
Q Consensus 136 -----l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~-----~Vv~~Al~aL~eI 202 (756)
.++.+.++|.++++.||..|+.|+..+...+|+ .+.+.+.++.|..+ +.+.+. .++.++..++..+
T Consensus 139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l-L~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL-LAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH-TCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH-HHhccchhhhHHHHHHHHHHHHHH
Confidence 578899999999999999999999999865543 34456788888887 565543 4567788888887
Q ss_pred HhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccchHH
Q 004394 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAV 277 (756)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~aV 277 (756)
+....... .. . .....+..|...+...++..+......|..+...+.+.... ++..+..+|++.+..|
T Consensus 218 ~~~~~~~~-----~~-~-~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 218 CRNKNPAP-----PL-D-AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HCCCSSCC-----CH-H-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred hhcccchh-----HH-H-HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence 76432110 00 0 11234566777778889999999999999887655443322 4577888999999999
Q ss_pred HHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc----cccccc-c-eeeecCCC
Q 004394 278 VLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF----IFASDY-K-HFYCQYNE 350 (756)
Q Consensus 278 vleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~----lf~~~~-~-~f~c~~~d 350 (756)
...|++++..+..........+++ .+.++|..+|+++++++|..+...|..|+...+. ++.... . .+.+..+.
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~ 370 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA 370 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred hhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC
Confidence 999999999886544333333322 2345678889999999999999999988765443 122111 1 12244567
Q ss_pred CHHHHHHHHHHHHHhcCCCCHHH--------HHHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 004394 351 PSYVKKLKLEMLTAVANESNTYE--------IVTELCEYAANVDIPIARESIRAVGKIA 401 (756)
Q Consensus 351 p~~IK~~kLdIL~~L~n~~Nv~~--------Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA 401 (756)
+..+|+.+...|..++...+.+. +++-|.+.+...|.+++..++.+|..+.
T Consensus 371 ~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 371 DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 78899999999999886555433 2566778888889988887777766554
No 40
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.98 E-value=2.2e-07 Score=106.35 Aligned_cols=330 Identities=10% Similarity=0.016 Sum_probs=226.3
Q ss_pred hhhhhhhhccCCChhhHHHHHHHHHHcc--ccCChH--HH--HHHHHHHHHcC-CCChHHHHHHHHHHhcCC--hhhh--
Q 004394 64 VFGEMVMCSATSDIVLKKMCYLYVGNYA--KVNPDL--AL--LTINFLQRDCK-DEDPMIRGLALRSLCSLR--VANL-- 132 (756)
Q Consensus 64 lF~~Vi~l~~s~d~~~KkL~YLyl~~~~--~~~~el--~l--L~iNtl~KDL~-s~Np~iR~LALrtLs~I~--~~ei-- 132 (756)
...++++.+.|+|.+.+.-+.-.+..++ +.+|-. .+ =++..|.+-|. +.|+.++..|..+|++|. .++-
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~ 156 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 156 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4678889999999887766666665443 334422 11 13677888775 567999988888888873 2332
Q ss_pred --HH-HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCCh-----hHHHHHHHHHHH
Q 004394 133 --VE-YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDP-----QVVANCLSALQE 201 (756)
Q Consensus 133 --~e-~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~-----~Vv~~Al~aL~e 201 (756)
++ -.++.+.++|.++++.||..|+.|+..+...+|+ .+.+.+.++.|..+ +.+.+. .++.+++.++..
T Consensus 157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l-L~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL-LAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT-TCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH-HhccchhHhHHHHHHHHHHHHHH
Confidence 22 2578899999999999999999999999866554 33456778888887 565543 456778888888
Q ss_pred HHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccchH
Q 004394 202 IWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGA 276 (756)
Q Consensus 202 I~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~a 276 (756)
++....... .. . .....+..|...+...++..+...+..|......+.+.... ++..+..+|++.+..
T Consensus 236 l~~~~~~~~-----~~-~-~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~ 308 (529)
T 3tpo_A 236 LCRNKNPAP-----PL-D-AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELP 308 (529)
T ss_dssp HHCCCTTCC-----CH-H-HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHH
T ss_pred HHhcccchh-----hH-H-HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChh
Confidence 775432110 00 0 11234566777778889999998998888876554433322 456788899999999
Q ss_pred HHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcc----ccccc-c-eeeecCC
Q 004394 277 VVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFI----FASDY-K-HFYCQYN 349 (756)
Q Consensus 277 Vvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~l----f~~~~-~-~f~c~~~ 349 (756)
|...|++++..+..........+++ .+.++|..+|+++++++|.-+...|..|+...+.. +.... . .+.+..+
T Consensus 309 v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 309 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 9999999999886543333333322 34467889999999999999999999888655431 22111 1 1224456
Q ss_pred CCHHHHHHHHHHHHHhcCCCCHH---HH-----HHHHHHHhhhCCHHHHHHHHHHHHHHH
Q 004394 350 EPSYVKKLKLEMLTAVANESNTY---EI-----VTELCEYAANVDIPIARESIRAVGKIA 401 (756)
Q Consensus 350 dp~~IK~~kLdIL~~L~n~~Nv~---~I-----v~EL~~Yl~~~D~~~~~~~I~aIg~lA 401 (756)
.+..+|..+...|..++...+.+ .+ +.-|.+.+...|.+++..+..+|..+.
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 448 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 77789999999999887554443 32 556778888889888877666665543
No 41
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=98.96 E-value=2.6e-08 Score=118.92 Aligned_cols=398 Identities=15% Similarity=0.117 Sum_probs=271.2
Q ss_pred CChHHHHHHHHHHHHHHhcCC-Ccc-------chhhhhhhhccCCChhhHHHHHHHHHHccccCChHHH----HHHHHHH
Q 004394 39 GIDDSKRELFKKVISYMTIGI-DVS-------AVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLAL----LTINFLQ 106 (756)
Q Consensus 39 ~~~~~kk~~lkKlI~~~~lG~-Dvs-------~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~l----L~iNtl~ 106 (756)
++.+.+..++.- +.....|- |+. ...+.++.++++++...++-++-++...+. +++..- .-+..|.
T Consensus 259 ~~~~~~~~a~~a-lt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~-~~~~R~~I~~~gv~~L~ 336 (810)
T 3now_A 259 PDMESKVRVTVA-ITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASS-KKDKAKALCEQGVDILK 336 (810)
T ss_dssp CCHHHHHHHHHH-HHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTT-SHHHHHTTHHHHHHHHH
T ss_pred CChHhHHHHHHH-HHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CcHHHHHHHHcCcHHHH
Confidence 445677777644 44444563 322 234456789999999999999999888654 455322 2246666
Q ss_pred HHcCCCChHHHHHHHHHHhcCCh--------hhh----HHHHHHHHHhhcCCC--ChHHHHHHHHHHHHHhhhcC---Cc
Q 004394 107 RDCKDEDPMIRGLALRSLCSLRV--------ANL----VEYLVGPLGLGLKDN--NSYVRTVAVIGVLKLYHISA---PT 169 (756)
Q Consensus 107 KDL~s~Np~iR~LALrtLs~I~~--------~ei----~e~l~~~v~~~L~d~--~pyVRKkAalal~kl~~~~p---~~ 169 (756)
+=+++.|+.+|..|+-+||++.. +.+ ++.+++.++++|.++ ++.||+.|+-|+..+-...+ +.
T Consensus 337 ~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~l 416 (810)
T 3now_A 337 RLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKL 416 (810)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 66778899999999999999852 122 467888899999888 89999999999998865332 23
Q ss_pred ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccc--------------------hh----HHHHHH-HhhccHH
Q 004394 170 CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST--------------------SE----EASRER-EALISKP 224 (756)
Q Consensus 170 ~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~--------------------~~----~~~~~~-~~ll~~~ 224 (756)
+.+.++++.|.++ ++..|+.++..|+.+|..|....... .. +....| ..++...
T Consensus 417 v~d~g~Ip~LV~L-L~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 417 IEDKASIHALMDL-ARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHCHHHHHHHHHH-HHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHccchHHHHHHH-hCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 3456788999997 68889999999999999998632100 00 000000 0112223
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccchHHHHHHHHHHHhhccc-cchh---
Q 004394 225 VIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDV--- 295 (756)
Q Consensus 225 ~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~aVvleaik~ii~l~~~-~~~~--- 295 (756)
.+..|...+...++=.|......|..... +++.... .+..|..+|++....+...|+.++.++..+ .+..
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 45566666777889899999999998863 4433333 456777888888888889999998877532 2221
Q ss_pred HHHHHHHHHHHHHHhhcCC-CcchHHHHHHHHHHHHhhCCc----ccccc-cc-eeeecCCCCHHHHHHHHHHHHHhcCC
Q 004394 296 HQQVYERIKAPLLTLVSSG-SPEQSYAVLSHLHILVMRAPF----IFASD-YK-HFYCQYNEPSYVKKLKLEMLTAVANE 368 (756)
Q Consensus 296 ~~~~l~rl~~~L~~LLss~-~~nirYvaL~~l~~L~~~~p~----lf~~~-~~-~f~c~~~dp~~IK~~kLdIL~~L~n~ 368 (756)
.+.+. .+.++|+.||++. +...++-++.+|..|+...+. ++... +. ...+..++...|++.++++|..|+..
T Consensus 575 ~~~~~-~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 575 GQRSL-DVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp THHHH-HTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred chhhh-cHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 11222 3678999999854 334468899988888765332 22211 11 12244556678999999999999864
Q ss_pred CCH-H------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-------hHHHHHHHHHhhhcCchhhHHHHHHHH
Q 004394 369 SNT-Y------EIVTELCEYAANVDIPIARESIRAVGKIALQQYDV-------NAIVDRLLQFLEMEKDYVTAEALVLVK 434 (756)
Q Consensus 369 ~Nv-~------~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-------~~~vd~Ll~LL~~~~~~v~~E~i~~i~ 434 (756)
... . ..++-|..++.+.|.+.++++..+|+.++...+.. ..++..|++|+..+...+..+++..+.
T Consensus 654 ~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 654 EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 322 2 24455677888889999999999999998743311 246678899998877788888888888
Q ss_pred HHHhhCC
Q 004394 435 DLLRKYP 441 (756)
Q Consensus 435 ~Il~~~p 441 (756)
++....+
T Consensus 734 NL~~~s~ 740 (810)
T 3now_A 734 NMINAGE 740 (810)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 8876444
No 42
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.90 E-value=1.4e-07 Score=95.43 Aligned_cols=232 Identities=16% Similarity=0.111 Sum_probs=171.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHH
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~ 213 (756)
++.+.+.|.++++.+|..|+.++..+....++. +.+.+.++.|.++ +.+.|+.|...|+.+|..+...++..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~---- 78 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKL-LTSTDSEVQKEAARALANIASGPDEA---- 78 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHHH----
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHcCChHH----
Confidence 567888899999999999999999998766532 2345788899997 68999999999999999998653321
Q ss_pred HHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHHHHHHHHHHHhh
Q 004394 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (756)
Q Consensus 214 ~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aVvleaik~ii~l 288 (756)
+..++....+..|+..+.+.++..+...+..|..+...+++... ..++.+...+++.+..|...|+.++.++
T Consensus 79 ---~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 79 ---IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp ---HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 11122233577788888888999999999999999866554333 3567788889999999999999999998
Q ss_pred ccccchhHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcC
Q 004394 289 TLSMTDVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVAN 367 (756)
Q Consensus 289 ~~~~~~~~~~~l-~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n 367 (756)
....++..+.+. ..+.+.|+.++.+++++++..++..|..++...+. .+. .+ .+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------------------~~~----~l---~~ 210 (252)
T 4hxt_A 156 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTS------------------AIK----AI---VD 210 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHH------------------HHH----HH---HH
T ss_pred HcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHH------------------HHH----HH---HH
Confidence 764443322222 23556788888888888998888888777643221 110 01 11
Q ss_pred CCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcC
Q 004394 368 ESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQY 405 (756)
Q Consensus 368 ~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~ 405 (756)
..+++.|.+.+.+.|.++++.++.+++.++...+
T Consensus 211 ----~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 211 ----AGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred ----CCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 1356777788888899999999999999997654
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.90 E-value=7.1e-08 Score=96.06 Aligned_cols=185 Identities=18% Similarity=0.172 Sum_probs=147.0
Q ss_pred hhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhh
Q 004394 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (756)
Q Consensus 64 lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~ 143 (756)
.+..+++.+.+++...|..+--.+..+.. ++ ++..|.+-+.|+|+.+|..|+++|+.++.++.++ .+.++
T Consensus 20 ~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~----~L~~~ 89 (211)
T 3ltm_A 20 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIKA 89 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHH----HHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhCC--cc----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHHH
Confidence 46777888889999888888777777654 22 3566777788999999999999999999887654 56677
Q ss_pred cCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccH
Q 004394 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (756)
Q Consensus 144 L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~ 223 (756)
|.|+++.||..|+.++.++-. ++.++.|.++ ++|+|+.|...|+.+|..+...
T Consensus 90 l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~------------------ 142 (211)
T 3ltm_A 90 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE------------------ 142 (211)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHCCG------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCH------------------
Confidence 899999999999999998743 3457888887 6999999999999999988431
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccc
Q 004394 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS 291 (756)
Q Consensus 224 ~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~ 291 (756)
..+..|+..+.+.+++.+...++.|..+.. ...++.+...+++.++.|..+|+.++..+..+
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 124456667788999999999999999853 34667788888889999999999999887654
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.87 E-value=1.1e-07 Score=94.02 Aligned_cols=183 Identities=18% Similarity=0.182 Sum_probs=143.9
Q ss_pred hhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhh
Q 004394 64 VFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG 143 (756)
Q Consensus 64 lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~ 143 (756)
.+..+++++.+++...|+..--.+..+.. ++ ++..+.+-+.|+|+.+|..|+++|+.++.++.++ .+.++
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--~~----~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~----~L~~~ 84 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGD--ER----AVEPLIKALKDEDAWVRRAAADALGQIGDERAVE----PLIKA 84 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCC--GG----GHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHH----HHHHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCC--hh----HHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHH----HHHHH
Confidence 46778899999999999888888877653 22 3566777778999999999999999999886654 56678
Q ss_pred cCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccH
Q 004394 144 LKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISK 223 (756)
Q Consensus 144 L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~ 223 (756)
|.|+++.||..|+.++.++.. ++..+.|.++ +.|+|+.|...|+.+|..+...
T Consensus 85 l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~-l~d~~~~vr~~a~~aL~~~~~~------------------ 137 (201)
T 3ltj_A 85 LKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKA-LKDEDWFVRIAAAFALGEIGDE------------------ 137 (201)
T ss_dssp TTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHH-TTCSSHHHHHHHHHHHHHHTCG------------------
T ss_pred HcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH-HcCCCHHHHHHHHHHHHHhCCH------------------
Confidence 889999999999999988642 3457778887 6999999999999999887421
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc
Q 004394 224 PVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 224 ~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~ 289 (756)
..+..|+..+.+.+++.+...++.|..+.. ...++.+...+++.+..|..+|+..+-.+.
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEIGG------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 124456677788899999999999998853 235677777778888888888888876654
No 45
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.83 E-value=1.3e-06 Score=96.43 Aligned_cols=310 Identities=10% Similarity=0.063 Sum_probs=196.1
Q ss_pred hHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCC--ChhhHHHHHHHHHHccccC-Ch-
Q 004394 21 EVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATS--DIVLKKMCYLYVGNYAKVN-PD- 96 (756)
Q Consensus 21 ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~--d~~~KkL~YLyl~~~~~~~-~e- 96 (756)
+...+|..|-+...+.++.. ..-..++..+.....-......+.+.++.++.++ +...|..+...+..+.+.. ++
T Consensus 87 ~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~ 165 (462)
T 1ibr_B 87 ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ 165 (462)
T ss_dssp HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence 34456665555443333322 2223333333322211124556777788888887 8888877777777665432 22
Q ss_pred ---HHHHHHHHHHHHcCCC--ChHHHHHHHHHHhcCC---hhh-----hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 004394 97 ---LALLTINFLQRDCKDE--DPMIRGLALRSLCSLR---VAN-----LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLY 163 (756)
Q Consensus 97 ---l~lL~iNtl~KDL~s~--Np~iR~LALrtLs~I~---~~e-----i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~ 163 (756)
..--+++.+.+-+.++ ++.+|..|+++++++. ... ..+++.+.+.+.+.|+++.||+.|+.++..+.
T Consensus 166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 2234566777777887 8999999999998732 111 23556788888899999999999999999999
Q ss_pred hhcCCcccC--C-CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh-------------HHHHHHHhhccHHHHH
Q 004394 164 HISAPTCID--A-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE-------------EASREREALISKPVIY 227 (756)
Q Consensus 164 ~~~p~~~~~--~-~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~-------------~~~~~~~~ll~~~~~~ 227 (756)
..+|+.+.. + ++.+.+... +.|.++.|...|+..+..++........ ..+........+.++.
T Consensus 246 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 324 (462)
T 1ibr_B 246 SLYYQYMETYMGPALFAITIEA-MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (462)
T ss_dssp HHCGGGCTTTTTTTHHHHHHHH-HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccH
Confidence 888875521 2 555655555 5799999999999998888764210000 0000000000022444
Q ss_pred HHHHHhccC------ChhH----HHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc-h-h
Q 004394 228 YLLNRIKEF------SEWA----QCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT-D-V 295 (756)
Q Consensus 228 ~Ll~~l~~~------~~W~----Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~-~-~ 295 (756)
.++..+.+. ++|. -...|..+....+. .-...+++.+...+++.+..+..+|+.++..+..... + +
T Consensus 325 ~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~ 402 (462)
T 1ibr_B 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL 402 (462)
T ss_dssp HHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHH
Confidence 555555432 3563 34455555555552 3345677888888889999999999999988764321 1 1
Q ss_pred HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc
Q 004394 296 HQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 296 ~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
. ..+..+.+.|..+++++++++|+.+...+..++...+.
T Consensus 403 ~-~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 403 K-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp C-TTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred H-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 1 12245677888999989999999999999999876543
No 46
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.83 E-value=5.3e-08 Score=99.27 Aligned_cols=220 Identities=16% Similarity=0.104 Sum_probs=166.6
Q ss_pred cchhhhhhhhccCCChhhHHHHHHHHHHccccCChHH--H---HHHHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhHH
Q 004394 62 SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLA--L---LTINFLQRDCKDEDPMIRGLALRSLCSLRV--ANLVE 134 (756)
Q Consensus 62 s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~--l---L~iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~e 134 (756)
.+.|+.+++.+.++|.+.+.-+--.+..++..+++.. + -++..|.+-+.++++.+|..|+.+|+++.. ++..+
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 3458889999999998888887777755544333321 1 146888899999999999999999999875 33333
Q ss_pred H-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 135 Y-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 135 ~-----l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
. .++.+.++|.++++.||+.|+.++..+....+.. +.+.+.++.|.++ +.+.|+.|...|+.+|..+...+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH-HhCCCHHHHHHHHHHHHHHHcCC
Confidence 2 6788999999999999999999999998755432 3456788999997 68999999999999999998644
Q ss_pred ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccchHHHHHH
Q 004394 207 ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANGAVVLST 281 (756)
Q Consensus 207 ~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~aVvlea 281 (756)
+.. ...++....+..|++.+.+.++..+...+..|..++..+++.... .++.+..++++.++.|..+|
T Consensus 170 ~~~-------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A 242 (252)
T 4db8_A 170 NEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEA 242 (252)
T ss_dssp HHH-------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTH
T ss_pred hHH-------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHH
Confidence 321 111222335677888888889999999999999998766554433 44556677788888888888
Q ss_pred HHHHHhhc
Q 004394 282 IKVFLHLT 289 (756)
Q Consensus 282 ik~ii~l~ 289 (756)
+.++..+.
T Consensus 243 ~~~L~~l~ 250 (252)
T 4db8_A 243 QEALEKLQ 250 (252)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHHh
Confidence 88887664
No 47
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.81 E-value=7.1e-08 Score=98.31 Aligned_cols=220 Identities=17% Similarity=0.127 Sum_probs=163.9
Q ss_pred HHHHHHHcCCCChHHHHHHHHHHhcCCh--hhhH-----HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---cc
Q 004394 102 INFLQRDCKDEDPMIRGLALRSLCSLRV--ANLV-----EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CI 171 (756)
Q Consensus 102 iNtl~KDL~s~Np~iR~LALrtLs~I~~--~ei~-----e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~ 171 (756)
.+.+.+.+.++|+.+|..|+++++++-. .+.. ...++.+.++|.++++.||..|+.++..+...+++. +.
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4788999999999999999888866432 2212 235688999999999999999999999998755442 23
Q ss_pred CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394 172 DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 172 ~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y 251 (756)
+.+.++.|.++ ++++|+.|..+|+.+|..+....+.. ...++....+..|+..+.+.++-.+...+..|..+
T Consensus 94 ~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 94 DAGALPALVQL-LSSPNEQILQEALWALSNIASGGNEQ-------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 165 (252)
T ss_dssp HTTHHHHHHHG-GGCSCHHHHHHHHHHHHHHTTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHH-HcCCCHHHHHHHHHHHHHhhcCCchH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 46778899997 68999999999999999997643310 01122234677888888888888999999999999
Q ss_pred CCCChhHHHH-----HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHH
Q 004394 252 VPLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSH 325 (756)
Q Consensus 252 ~p~d~~e~~~-----il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~ 325 (756)
...+++.... .++.+..+|++.+..|...|+.++..+....++....+.+ .+.+.|+.++.++++++|..+...
T Consensus 166 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 166 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 8766544332 4567888888889999999999999887544433333332 355677888888888888888777
Q ss_pred HHHH
Q 004394 326 LHIL 329 (756)
Q Consensus 326 l~~L 329 (756)
|..|
T Consensus 246 L~~l 249 (252)
T 4db8_A 246 LEKL 249 (252)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 7654
No 48
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.60 E-value=8.7e-07 Score=87.67 Aligned_cols=186 Identities=18% Similarity=0.092 Sum_probs=133.3
Q ss_pred CCCccchhhhhhhhccCCChhhHHHHHHHHHHccccCChHHHH-----HHHHHHHHcCCCChHHHHHHHHHHhcCC--hh
Q 004394 58 GIDVSAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALL-----TINFLQRDCKDEDPMIRGLALRSLCSLR--VA 130 (756)
Q Consensus 58 G~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL-----~iNtl~KDL~s~Np~iR~LALrtLs~I~--~~ 130 (756)
|++....++-+++++.++|...+.-+...+.++...+++.... ++..+.+=+.++|+.+|..|+.+|+++. .+
T Consensus 7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 3444455677788999999999999999999998766665322 4678888899999999999999999985 34
Q ss_pred hhHHH-----HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHH
Q 004394 131 NLVEY-----LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEI 202 (756)
Q Consensus 131 ei~e~-----l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI 202 (756)
+..+. .++.+.++|.++++.||+.|+.++..+...+++. +.+.+.++.|.++ +.+.|+.|...|+.+|..+
T Consensus 87 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l 165 (210)
T 4db6_A 87 EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNI 165 (210)
T ss_dssp HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHH-HcCCCHHHHHHHHHHHHHH
Confidence 43333 4688999999999999999999999998765543 2346788999997 6889999999999999999
Q ss_pred HhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 004394 203 WSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKY 251 (756)
Q Consensus 203 ~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y 251 (756)
...++.. +..+.....+..|++.+.+.++-.+...+.+|..+
T Consensus 166 ~~~~~~~-------~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 166 ASGGNEQ-------KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HTSCHHH-------HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HcCCcHH-------HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 8643321 11111112344555555555555555555555544
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.57 E-value=1.4e-06 Score=86.15 Aligned_cols=189 Identities=17% Similarity=0.118 Sum_probs=142.3
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccch
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 210 (756)
+...+.+.++|.++++.||..|+.++..+...+++. +.+.+.++.|.++ +.+.|+.|...|+.+|..+...++..
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~- 88 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL-LSSPNEQILQEALWALSNIASGGNEQ- 88 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTSCHHH-
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCcHH-
Confidence 445678889999999999999999999998655543 2345778889897 68999999999999999997544321
Q ss_pred hHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHH-----HHHHHHHHHhcccchHHHHHHHHHH
Q 004394 211 EEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIF-----DIMNLLEDRLQHANGAVVLSTIKVF 285 (756)
Q Consensus 211 ~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~-----~il~~l~~~L~~~n~aVvleaik~i 285 (756)
+..++....+..|+..+.+.++-.+...+..|..+...+++... ..++.+..++++.+..|...|+.++
T Consensus 89 ------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL 162 (210)
T 4db6_A 89 ------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 162 (210)
T ss_dssp ------HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ------HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11122223467788888889999999999999999876655433 2567788889999999999999999
Q ss_pred HhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHH
Q 004394 286 LHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILV 330 (756)
Q Consensus 286 i~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~ 330 (756)
.++....++....+.+ .+.+.|..++.++++++|..++..|..|.
T Consensus 163 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 163 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 9887654443333322 35567888998889999999998887764
No 50
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.50 E-value=1.3e-05 Score=89.94 Aligned_cols=332 Identities=13% Similarity=0.128 Sum_probs=197.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHH
Q 004394 137 VGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (756)
Q Consensus 137 ~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~ 213 (756)
++.+.+.|.++++.+|..|+.++.++...+++ .+.+.+.++.|.++ |+++|+.+...|+.+|..|...++..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~l-L~s~~~~~~~~A~~aL~nLa~~~~~~---- 78 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDL-LRSPNQNVQQAAAGALRNLVFRSTTN---- 78 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHH-TTSSCHHHHHHHHHHHHHHHSSCHHH----
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHhcCCHHH----
Confidence 45677778888999999999999998866554 33457788999997 68899999999999999998643321
Q ss_pred HHHHHhhccHHHHHHHHHHhc-cCChhHHHHHHHHHHhhCCCCh-hH--HHHHHHHHHHHhc--------c--------c
Q 004394 214 SREREALISKPVIYYLLNRIK-EFSEWAQCLVLELVAKYVPLDS-NE--IFDIMNLLEDRLQ--------H--------A 273 (756)
Q Consensus 214 ~~~~~~ll~~~~~~~Ll~~l~-~~~~W~Qi~IL~lL~~y~p~d~-~e--~~~il~~l~~~L~--------~--------~ 273 (756)
+...+....+..|+..|. ..++=.|......|..+...++ ++ ....+..+..+|. + .
T Consensus 79 ---k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 79 ---KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp ---HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred ---HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 111112224566777777 5677778888888877654321 11 1245566667772 1 2
Q ss_pred chHHHHHHHHHHHhhccccchhHHHHHH--HHHHHHHHhhcC------CCcchHHHHHHHHHHHHhh----CC-------
Q 004394 274 NGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILVMR----AP------- 334 (756)
Q Consensus 274 n~aVvleaik~ii~l~~~~~~~~~~~l~--rl~~~L~~LLss------~~~nirYvaL~~l~~L~~~----~p------- 334 (756)
...|+..|+.++.++... ++....+.+ .+.++|+.+|.+ .+..+.--++..+..+..+ -|
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 457888999999998765 444444442 567788888864 2333332232222222110 00
Q ss_pred -------------cccc---------------------cc-ccee-----------eecCCCCHHHHHHHHHHHHHhcCC
Q 004394 335 -------------FIFA---------------------SD-YKHF-----------YCQYNEPSYVKKLKLEMLTAVANE 368 (756)
Q Consensus 335 -------------~lf~---------------------~~-~~~f-----------~c~~~dp~~IK~~kLdIL~~L~n~ 368 (756)
..|. ++ ...+ .....+...++..+.-.|..||..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0000 00 0000 001223456777778888888753
Q ss_pred C-C----H-H------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCC----hhHHHHHHHHHhhhcCc------hhh
Q 004394 369 S-N----T-Y------EIVTELCEYAANVDIPIARESIRAVGKIALQQYD----VNAIVDRLLQFLEMEKD------YVT 426 (756)
Q Consensus 369 ~-N----v-~------~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~----~~~~vd~Ll~LL~~~~~------~v~ 426 (756)
+ . + + .++.-|.+.+.+.|.+++++++.+|+.++..-.. ...++..|+++|..+.. .+.
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~ 394 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL 394 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence 3 1 1 1 1244566777778888888888888888753111 12466778888776432 244
Q ss_pred HHHHHHHHHHHhhCCCcch-----HHHHHHHHhhhccCCchhHHHHHHhHhccCCCC
Q 004394 427 AEALVLVKDLLRKYPQWSH-----DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQD 478 (756)
Q Consensus 427 ~E~i~~i~~Il~~~p~~~~-----~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~ 478 (756)
..++..+.+|+...++... ..+..+.++.... ..++++..+.|+|..|..+
T Consensus 395 ~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~-~~~~i~~~A~~~L~~~~~~ 450 (457)
T 1xm9_A 395 SSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS-ASPKAAEAARLLLSDMWSS 450 (457)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC-CcHHHHHHHHHHHHHHHcc
Confidence 4445556677766665322 1223344443221 2567777778888877643
No 51
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.42 E-value=8e-06 Score=88.77 Aligned_cols=184 Identities=10% Similarity=0.052 Sum_probs=75.0
Q ss_pred HhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhh
Q 004394 232 RIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLV 311 (756)
Q Consensus 232 ~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LL 311 (756)
.+.+.+|...-..+=...+..+.+++..+.+++.+.+.+...|+.|++.|+.++..+..... ..+.++. .-+
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~----~a~~kLv----~~l 218 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR----LAVSKMI----SKF 218 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH----HHHHHHH----HHH
T ss_pred HcCCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch----HHHHHHH----HHH
Confidence 34444444444433333344455555555677777788888999999999998888765321 1223332 223
Q ss_pred cCC---CcchHHHHHHHHHHHHhhC-Cccccccccee-eecCCCCHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHhhh
Q 004394 312 SSG---SPEQSYAVLSHLHILVMRA-PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESN--TYEIVTELCEYAAN 384 (756)
Q Consensus 312 ss~---~~nirYvaL~~l~~L~~~~-p~lf~~~~~~f-~c~~~dp~~IK~~kLdIL~~L~n~~N--v~~Iv~EL~~Yl~~ 384 (756)
... ++-.+...++.+..+.... |..-...++.+ -|+.+....|-..+...+..+-+... ....+.-|.-++.+
T Consensus 219 ~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~~~a~~~L~~fLss 298 (355)
T 3tjz_B 219 TRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKELAPAVSVLQLFCSS 298 (355)
T ss_dssp HSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC-----------CCCTHHHHHHS
T ss_pred hcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHcC
Confidence 322 2222222233332333333 32222222222 35556666777777777777644111 11123334455666
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCh-hHHHHHHHHHhhhcCc
Q 004394 385 VDIPIARESIRAVGKIALQQYDV-NAIVDRLLQFLEMEKD 423 (756)
Q Consensus 385 ~D~~~~~~~I~aIg~lA~k~~~~-~~~vd~Ll~LL~~~~~ 423 (756)
.|.+++=-+++.|..++.++|.. ..|-..+.++++.++.
T Consensus 299 ~d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~ 338 (355)
T 3tjz_B 299 PKAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANR 338 (355)
T ss_dssp SSSSSHHHHHHCC---------------------------
T ss_pred CCchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcH
Confidence 67666667777777777777754 4455666666665443
No 52
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.41 E-value=1.6e-05 Score=80.36 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=143.6
Q ss_pred chHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC--
Q 004394 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV-- 252 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~-- 252 (756)
....|..+ ++|.|+.|+.+|+.+|.++.+.-++.. +. ......+..+++.+.+.++=.-++-++++....
T Consensus 34 ~l~~L~~L-L~dkD~~vk~raL~~LeellK~~~~~l------~~-~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~ 105 (265)
T 3b2a_A 34 ALFLILEL-AGEDDETTRLRAFVALGEILKRADSDL------RM-MVLERHLDVFINALSQENEKVTIKALRALGYLVKD 105 (265)
T ss_dssp HHHHHHHH-TTSSCHHHHHHHHHHHHHHHHHSCHHH------HH-HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-HhccchHHHHHHHHHHHHHHHhccccc------cH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence 46678887 799999999999999999987644310 10 111335666777778899999999999998874
Q ss_pred -CCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 253 -PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 253 -p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
|-+++...++++.+...+.+.|.....+|+-..-.+..... ..++.+.+.+++.|+++.+|-+||+.+..+..
T Consensus 106 vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~ 179 (265)
T 3b2a_A 106 VPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLN 179 (265)
T ss_dssp CCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhc
Confidence 55677778899999999998999999999999888744322 14567788899999999999999999999988
Q ss_pred hC--Cccccccccee-eecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 004394 332 RA--PFIFASDYKHF-YCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCE 380 (756)
Q Consensus 332 ~~--p~lf~~~~~~f-~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~ 380 (756)
+. |.++..=++.+ +...++|.+++.++|++|..+.+..=.++++.++..
T Consensus 180 ~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~ 231 (265)
T 3b2a_A 180 SSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLK 231 (265)
T ss_dssp GCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHH
Confidence 64 44444422211 334566889999999999998877544555555443
No 53
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.38 E-value=0.00048 Score=84.27 Aligned_cols=347 Identities=11% Similarity=0.090 Sum_probs=177.1
Q ss_pred HHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 133 VEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 133 ~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
-+.+-..+..++.+..+.||++++.++.++.+. .|+.- +++++.|..+ ++..|+..+.+++.+|.+|.+.......
T Consensus 83 k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W--p~ll~~L~~~-l~s~~~~~~~~aL~~l~~i~~~~~~~~~ 159 (960)
T 1wa5_C 83 VELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW--PTLLSDLASR-LSNDDMVTNKGVLTVAHSIFKRWRPLFR 159 (960)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC--TTHHHHHHTT-CCSSCTTHHHHHHHHHHHHHGGGTTSCC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch--hHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444445555556699999999999999986 56433 5566777776 5777888889999999999763211000
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhccc--c-------hHHHHHHH
Q 004394 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHA--N-------GAVVLSTI 282 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~--n-------~aVvleai 282 (756)
. .+. .+-+.++++.. .-.+++++.. +...++.. + ..++..++
T Consensus 160 ~--~~~-----~~~l~~~l~~~-------~~~ll~~~~~---------------~~~~l~~~~~~~~~~~~~~~~~~~~~ 210 (960)
T 1wa5_C 160 S--DEL-----FLEIKLVLDVF-------TAPFLNLLKT---------------VDEQITANENNKASLNILFDVLLVLI 210 (960)
T ss_dssp C--HHH-----HHHHHHHHHHH-------HHHHHHHHHH---------------HHHHTTCCC--CHHHHHHHHHHHHHH
T ss_pred C--hHH-----HHHHHHHHHHH-------HHHHHHHHHH---------------HHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 000 00011111100 0011111111 11111111 0 01222344
Q ss_pred HHHHhhcc-ccchhHHHHHHHHHHHHHHhhcCC------C---c------chHHHHHHHHHHHHhhCCcccccccceee-
Q 004394 283 KVFLHLTL-SMTDVHQQVYERIKAPLLTLVSSG------S---P------EQSYAVLSHLHILVMRAPFIFASDYKHFY- 345 (756)
Q Consensus 283 k~ii~l~~-~~~~~~~~~l~rl~~~L~~LLss~------~---~------nirYvaL~~l~~L~~~~p~lf~~~~~~f~- 345 (756)
|++..+.. ..++.....+....+.+..+|... + . .+|--+++.+..+..++|+.|.+|+..|+
T Consensus 211 k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~ 290 (960)
T 1wa5_C 211 KLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQ 290 (960)
T ss_dssp HHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433321 111111111233333444455321 1 1 24556778888888888887776654331
Q ss_pred -e--------cCCCCHHHHHHHHHHHHHhcCCCCHH------HHHHHHH-----HHhh----h-----CC----------
Q 004394 346 -C--------QYNEPSYVKKLKLEMLTAVANESNTY------EIVTELC-----EYAA----N-----VD---------- 386 (756)
Q Consensus 346 -c--------~~~dp~~IK~~kLdIL~~L~n~~Nv~------~Iv~EL~-----~Yl~----~-----~D---------- 386 (756)
+ ....+..++...++.+..++...... ..+.+|. .++. + .|
T Consensus 291 ~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e 370 (960)
T 1wa5_C 291 ITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLE 370 (960)
T ss_dssp HHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccC
Confidence 1 11345678999999999887543211 3344444 2331 1 11
Q ss_pred ----HHHHHHHHHHHHHHHhhcCChhHHHHHHHHH----hhh-----cCc-hhhHHHHHHHHHHHhhC--CC--cch---
Q 004394 387 ----IPIARESIRAVGKIALQQYDVNAIVDRLLQF----LEM-----EKD-YVTAEALVLVKDLLRKY--PQ--WSH--- 445 (756)
Q Consensus 387 ----~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~L----L~~-----~~~-~v~~E~i~~i~~Il~~~--p~--~~~--- 445 (756)
...|+.+...+..++.++++ .++..++.+ +.. ..+ ...+-++..+..|..+- ++ ...
T Consensus 371 ~~d~~s~R~aa~~~L~~l~~~~~~--~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~ 448 (960)
T 1wa5_C 371 GSDTDTRRRACTDFLKELKEKNEV--LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNN 448 (960)
T ss_dssp C----CHHHHHHHHHHHHHHHCHH--HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCT
T ss_pred cccccCcHHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccc
Confidence 12455677777778877752 344444443 331 112 12223334444554321 11 000
Q ss_pred --HHHHHHHH-hhh--ccC--CchhHHHHHHhHhccCCCCCCC--hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhh
Q 004394 446 --DCIAVVGS-ISS--QNV--QEPKAKAALIWMLGEYSQDMQD--APYILESLTENWEEEPSAEVRLHLLTAVMKCFF 514 (756)
Q Consensus 446 --~~~~~l~~-l~~--~~i--~~p~ak~a~iWiLGEy~~~i~~--~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~ 514 (756)
.....+.+ ++. .+- .+|..+.+++|.+|.|++.+.. ...++..+++.+.+.+ ..||...-.|+..+.-
T Consensus 449 ~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 449 LLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDE-YVVYTYAAITIEKILT 525 (960)
T ss_dssp TCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh
Confidence 12222222 110 111 2678899999999999988731 3345566667776666 8999999999988764
No 54
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.32 E-value=1.3e-05 Score=81.71 Aligned_cols=197 Identities=13% Similarity=0.044 Sum_probs=145.2
Q ss_pred HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc--CCCchHHHHHhHh-cCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 135 YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI--DADFPPTLKHLML-NDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 135 ~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~--~~~~i~~L~~lLL-~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
.+-+.+.+.+.|+++.+|+.|+.++.++...+|+... ..++.+.|..+ + +|.|+.|+..|+.++..++..-+...
T Consensus 15 ~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~-l~kd~~~~V~~~a~~~l~~la~~l~~~~- 92 (242)
T 2qk2_A 15 KMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKV-ITKDSNVVLVAMAGKCLALLAKGLAKRF- 92 (242)
T ss_dssp GSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHH-HHHCSCHHHHHHHHHHHHHHHHHHGGGG-
T ss_pred cCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHhhhH-
Confidence 3344577788999999999999999999988666431 12345667776 5 49999999999999999986432211
Q ss_pred HHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhc-c
Q 004394 212 EASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLT-L 290 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~-~ 290 (756)
......++..|+..+.+.++-.+......|..+....+ ...+++.+...|++.|+.|..+++..+..+. .
T Consensus 93 -------~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~ 163 (242)
T 2qk2_A 93 -------SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTR 163 (242)
T ss_dssp -------HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 11123467788888999888888888888877654332 4568899999999999999999999888743 2
Q ss_pred ccch-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc-ccccccc
Q 004394 291 SMTD-VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYK 342 (756)
Q Consensus 291 ~~~~-~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~-lf~~~~~ 342 (756)
..++ .....+..+.+.|..+++++.+++|-.+...+..+....+. .|.+++.
T Consensus 164 ~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 164 TQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred cCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 2122 22344577888899999999999999999999999876554 3555543
No 55
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.31 E-value=0.00014 Score=84.04 Aligned_cols=186 Identities=15% Similarity=0.106 Sum_probs=115.9
Q ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhh-cccchh
Q 004394 136 LVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL-EASTSE 211 (756)
Q Consensus 136 l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~-~~~~~~ 211 (756)
-++.+.++|.+.++-++..|+.++.++...+++ .+.+.+.++.|.++ |...++.|..+|+.+|..|... ++..
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~L-L~s~~~~vq~~Aa~AL~nLa~~~~~~n-- 125 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGL-LDHPKKEVHLGACGALKNISFGRDQDN-- 125 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHG-GGCSSHHHHHHHHHHHHHHTSSSCHHH--
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHH-HCCCCHHHHHHHHHHHHHHHccCCHHH--
Confidence 356677888889999999999999888764433 23456778999997 6889999999999999999763 2211
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcc-CChhHHHHHHHHHHhhCCCChhHHHHH----HHHHHHHh----------------
Q 004394 212 EASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFDI----MNLLEDRL---------------- 270 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~-~~~W~Qi~IL~lL~~y~p~d~~e~~~i----l~~l~~~L---------------- 270 (756)
+...+....+..|+..|.. .++-.|-.....|..+.-.+ +-...| +..|..++
T Consensus 126 -----k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 126 -----KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp -----HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC--------
T ss_pred -----HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhccccccccccccccc
Confidence 1111222345667776665 35556777666776665432 222222 33344333
Q ss_pred -cc-cchHHHHHHHHHHHhhccccchhHHHHHH--HHHHHHHHhhcC------CCcchHHHHHHHHHHHH
Q 004394 271 -QH-ANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS------GSPEQSYAVLSHLHILV 330 (756)
Q Consensus 271 -~~-~n~aVvleaik~ii~l~~~~~~~~~~~l~--rl~~~L~~LLss------~~~nirYvaL~~l~~L~ 330 (756)
++ ....|+..|+.++..+....++.++.+.+ .++.+|+.+|.+ .+..++--++..|.-|.
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs 269 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS 269 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence 11 23689999999999997654443443332 345678888753 23334444555554444
No 56
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.28 E-value=0.00046 Score=77.33 Aligned_cols=337 Identities=12% Similarity=0.030 Sum_probs=214.9
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc-------cchhhhhhhhccCCChhhHHHHHHHHHHccccC
Q 004394 22 VSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV-------SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVN 94 (756)
Q Consensus 22 i~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dv-------s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~ 94 (756)
+..+-..|++ ++.+.+..+. ..+..+..+.+- ....+.+++++.+++...++-+--++.+++..+
T Consensus 4 l~~lv~~L~s-------~~~~~q~~A~-~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLSS-------QDEKYQAIGA-YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHHS-------SCTHHHHHHH-HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHCC-------CCHHHHHHHH-HHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4455555554 2335566665 445555555432 123566788999999999999999999998776
Q ss_pred ChHHHHH-----HHHHHHHcC-CCChHHHHHHHHHHhcCCh-----hhhHHHHHHHHHhhcC--------C--------C
Q 004394 95 PDLALLT-----INFLQRDCK-DEDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLK--------D--------N 147 (756)
Q Consensus 95 ~el~lL~-----iNtl~KDL~-s~Np~iR~LALrtLs~I~~-----~ei~e~l~~~v~~~L~--------d--------~ 147 (756)
++.-..+ +..|.+=|. ++++.++-.|..+|++|.. ..+++..++.+.++|. + .
T Consensus 76 ~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccc
Confidence 6654433 667888888 8899999999888887743 2255577888888882 2 3
Q ss_pred ChHHHHHHHHHHHHHhhhcCC---cccCC-CchHHHHHhHhcC------CChhHHHHHHHHHHHHHhhc----ccchh--
Q 004394 148 NSYVRTVAVIGVLKLYHISAP---TCIDA-DFPPTLKHLMLND------PDPQVVANCLSALQEIWSLE----ASTSE-- 211 (756)
Q Consensus 148 ~pyVRKkAalal~kl~~~~p~---~~~~~-~~i~~L~~lLL~D------~d~~Vv~~Al~aL~eI~~~~----~~~~~-- 211 (756)
++.|++.|+.++..+... |+ .+.+. +.++.|..+| .+ .|..++-+|+.+|..+...- +....
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~ 233 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYV-QNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL 233 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHH-HHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHH-HhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhc
Confidence 567888999999988864 43 23343 7888888874 43 45567777877776653110 00000
Q ss_pred -------------HHH------------------------HHHHhhccHHHHHHHHHHhccC-ChhHHHHHHHHHHhhCC
Q 004394 212 -------------EAS------------------------REREALISKPVIYYLLNRIKEF-SEWAQCLVLELVAKYVP 253 (756)
Q Consensus 212 -------------~~~------------------------~~~~~ll~~~~~~~Ll~~l~~~-~~W~Qi~IL~lL~~y~p 253 (756)
..| .....+++...+..|+..+... ++-.+......|..++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~ 313 (457)
T 1xm9_A 234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA 313 (457)
T ss_dssp HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhcc
Confidence 000 0011234555667777766554 57788888888888876
Q ss_pred CChh---HH-------HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCc------c
Q 004394 254 LDSN---EI-------FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSP------E 317 (756)
Q Consensus 254 ~d~~---e~-------~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~------n 317 (756)
.+.. +. ...++.+..+|++.+..|..+|+.++-++..+ +..+..+-....++|+.+|.++++ +
T Consensus 314 ~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLHRVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGHHHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred CcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHHHHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 4432 11 13457788899999999999999999988754 334433345667889999987654 5
Q ss_pred hHHHHHHHHHHHHhhCCcc---ccc-c-ccee-eecCCC-CHHHHHHHHHHHHHhcCCC
Q 004394 318 QSYAVLSHLHILVMRAPFI---FAS-D-YKHF-YCQYNE-PSYVKKLKLEMLTAVANES 369 (756)
Q Consensus 318 irYvaL~~l~~L~~~~p~l---f~~-~-~~~f-~c~~~d-p~~IK~~kLdIL~~L~n~~ 369 (756)
+...++..+..++...+.. +.. . +..+ .+..++ ...|++.+..+|..+...+
T Consensus 393 v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 7778888888887665531 110 0 0111 112233 4556666666666665443
No 57
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.27 E-value=0.00028 Score=81.53 Aligned_cols=355 Identities=12% Similarity=0.070 Sum_probs=221.8
Q ss_pred CCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCC-----c--cchhhhhhhhccCCChhhHHHHHHH
Q 004394 14 SQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGID-----V--SAVFGEMVMCSATSDIVLKKMCYLY 86 (756)
Q Consensus 14 ~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~D-----v--s~lF~~Vi~l~~s~d~~~KkL~YLy 86 (756)
-...+.+++..|-..|++ ++.+.+.++.. .+..+..|.+ + ....+..++++.+++...++-+--+
T Consensus 42 ~~~~~~~~i~~LV~~L~s-------~~~~~q~~Aa~-~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~A 113 (584)
T 3l6x_A 42 PPNWRQPELPEVIAMLGF-------RLDAVKSNAAA-YLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGA 113 (584)
T ss_dssp CCCCCCCCHHHHHHHTTC-------SCHHHHHHHHH-HHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHCC-------CCHHHHHHHHH-HHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHH
Confidence 345567888888888875 44566777764 4566665543 1 1235667889999999999999999
Q ss_pred HHHcccc-CChHHHH-----HHHHHHHHcCC-CChHHHHHHHHHHhcCCh-----hhhHHHHHHHHHhhc----------
Q 004394 87 VGNYAKV-NPDLALL-----TINFLQRDCKD-EDPMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGL---------- 144 (756)
Q Consensus 87 l~~~~~~-~~el~lL-----~iNtl~KDL~s-~Np~iR~LALrtLs~I~~-----~ei~e~l~~~v~~~L---------- 144 (756)
+.+++.. +++.-.. +|..|.+=|.+ .++.++..|..+|.++.. ..+++.-++++.+++
T Consensus 114 L~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 114 LKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp HHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC--
T ss_pred HHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccc
Confidence 9999864 4443221 36667777775 566666665544444432 224455566676655
Q ss_pred --------CCCChHHHHHHHHHHHHHhhhcCC----cccCCCchHHHHHhHh-----cCCChhHHHHHHHHHHHHHhhc-
Q 004394 145 --------KDNNSYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLML-----NDPDPQVVANCLSALQEIWSLE- 206 (756)
Q Consensus 145 --------~d~~pyVRKkAalal~kl~~~~p~----~~~~~~~i~~L~~lLL-----~D~d~~Vv~~Al~aL~eI~~~~- 206 (756)
...++.|++.|+-|+..+-..+++ .+...+.++.|..+|- .+.+...+-+|+.+|..+...-
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 123679999999999988764433 1223567777777632 1356678889999987765321
Q ss_pred ---ccc--hhH------------HHHHHHhhccHHHHHHHHHHhcc-CChhHHHHHHHHHHhhCCCChh---HH------
Q 004394 207 ---AST--SEE------------ASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSN---EI------ 259 (756)
Q Consensus 207 ---~~~--~~~------------~~~~~~~ll~~~~~~~Ll~~l~~-~~~W~Qi~IL~lL~~y~p~d~~---e~------ 259 (756)
|.. ..+ .......+.+...+..|+..+.. .++..|......|..++..+.. ..
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~ 353 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQ 353 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTS
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHH
Confidence 100 000 00012224455567777777754 4788899999999888655421 11
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCC--------CcchHHHHHHHHHHHHh
Q 004394 260 FDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSG--------SPEQSYAVLSHLHILVM 331 (756)
Q Consensus 260 ~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~--------~~nirYvaL~~l~~L~~ 331 (756)
...+..|..+|++.+..|+..|+.++-++.... ..+..+-....+.|+.+|.++ ..++..-++..|..|+.
T Consensus 354 ~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~-~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a 432 (584)
T 3l6x_A 354 EKALSAIADLLTNEHERVVKAASGALRNLAVDA-RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIA 432 (584)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh-hHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhc
Confidence 245777888999999999999999998886532 233333345667899999765 24677888888888876
Q ss_pred hCCcc----cccc-ccee-eecCC--CCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 004394 332 RAPFI----FASD-YKHF-YCQYN--EPSYVKKLKLEMLTAVANESNTYEIVTE 377 (756)
Q Consensus 332 ~~p~l----f~~~-~~~f-~c~~~--dp~~IK~~kLdIL~~L~n~~Nv~~Iv~E 377 (756)
..+.- .... +..+ .++.+ ....+++.+--+|+.|++.+....++++
T Consensus 433 ~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk 486 (584)
T 3l6x_A 433 ENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEK 486 (584)
T ss_dssp TCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred CCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 65531 1111 1111 12222 2456777777777777766555555543
No 58
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.20 E-value=0.0033 Score=74.31 Aligned_cols=423 Identities=14% Similarity=0.133 Sum_probs=245.7
Q ss_pred CCChHHHHHHHHHHhcCCh---hhhHHHHHHHHHhhc------CCCChHHHHHHHHHHHHHhhhcCCcc----cCCCchH
Q 004394 111 DEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGL------KDNNSYVRTVAVIGVLKLYHISAPTC----IDADFPP 177 (756)
Q Consensus 111 s~Np~iR~LALrtLs~I~~---~ei~e~l~~~v~~~L------~d~~pyVRKkAalal~kl~~~~p~~~----~~~~~i~ 177 (756)
..-+.+|+++|-.++.+-. .+.-+.+...+..++ .+.+|++ .++-++.-+|...|+.+ ..+++.+
T Consensus 181 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~~~~~~~~--~~~~~l~~lfPi~p~~~s~lfl~e~~~~ 258 (778)
T 3opb_A 181 ISEDEVKSMMLIIFAELQSSFQKDFDKAVVDFMSSLIVEAEIDVGNDPLS--IIVKTLSELYPSLTTLCSEIFLTKGLSK 258 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHH--HHHHHHHHHTTTTHHHHHHHHSTTTHHH
T ss_pred cChhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHhhccCCCCccHH--HHHHHHHHHhcCCHHHHHHHHccccHHH
Confidence 4455667766666655421 223333333333233 2455665 56666667788887754 4688889
Q ss_pred HHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC---CC
Q 004394 178 TLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV---PL 254 (756)
Q Consensus 178 ~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~---p~ 254 (756)
.+.+.+...++..+..+++.+|...+.. +.|++ .+.+..+..|...++. +-.+..-+=.|.+.. ..
T Consensus 259 ~l~~~~~~~~~~~~~~a~L~lLsaACi~------~~cR~---~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~ 327 (778)
T 3opb_A 259 LFKKRVFEEQDLQFTKELLRLLSSACID------ETMRT---YITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKL 327 (778)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHCCS------HHHHH---HHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTC
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhCC------cHHHH---HHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCC
Confidence 8888754566777778888877776543 23533 2334444444444432 222222222332321 11
Q ss_pred ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH--HHHHHHHHhhcC-CCcchHHHHHHHHHHHHh
Q 004394 255 DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVSS-GSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 255 d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~--rl~~~L~~LLss-~~~nirYvaL~~l~~L~~ 331 (756)
......++.+.+...|.+......--|+..+.+++.. ++++..+.+ .+...|+.++.+ .++.+.|-++..+.-+..
T Consensus 328 ~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 328 TCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp TTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred CcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 2234566888888888876655577788888887753 344433321 223446777774 677899999999998887
Q ss_pred hCCcccc----------------c-------------ccceee---------------ecCCCCHHHHHHHHHHHHHhcC
Q 004394 332 RAPFIFA----------------S-------------DYKHFY---------------CQYNEPSYVKKLKLEMLTAVAN 367 (756)
Q Consensus 332 ~~p~lf~----------------~-------------~~~~f~---------------c~~~dp~~IK~~kLdIL~~L~n 367 (756)
..|.... + |+..|- +..+....+|..+..+|..|+.
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 6553211 0 111111 1234567788999999999985
Q ss_pred CC-CHHHH-----HHHHHHHhhhCCHH---HHHHHHHHHHHHHhhc------C--ChhHHHHHHHHHhhh--cCc-----
Q 004394 368 ES-NTYEI-----VTELCEYAANVDIP---IARESIRAVGKIALQQ------Y--DVNAIVDRLLQFLEM--EKD----- 423 (756)
Q Consensus 368 ~~-Nv~~I-----v~EL~~Yl~~~D~~---~~~~~I~aIg~lA~k~------~--~~~~~vd~Ll~LL~~--~~~----- 423 (756)
.. |-..+ ++-|+.++.+.... .+..+.+++++|++.- + .....|..|++||.. ..+
T Consensus 487 d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~ 566 (778)
T 3opb_A 487 SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH 566 (778)
T ss_dssp SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence 54 44433 55677888765433 7889999999998642 2 112577889999873 111
Q ss_pred -------hhhHHHHHHHHHHHhhCC----CcchHH------HHHHHHhhhccCCchhHHHHHHhHhccCCCC-------C
Q 004394 424 -------YVTAEALVLVKDLLRKYP----QWSHDC------IAVVGSISSQNVQEPKAKAALIWMLGEYSQD-------M 479 (756)
Q Consensus 424 -------~v~~E~i~~i~~Il~~~p----~~~~~~------~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~-------i 479 (756)
--..|++..+.++..... +.+..+ +..+.+++.+ +.+..+.+++|++.-.... +
T Consensus 567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s--~n~~VrrAA~elI~NL~~~~e~i~~k~ 644 (778)
T 3opb_A 567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD--ENVPLQRSTLELISNMMSHPLTIAAKF 644 (778)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHTSGGGTGGGT
T ss_pred ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC--CCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 014577888888876431 223222 2334444322 3456788888887543211 1
Q ss_pred ---CChH--HHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCChhh------HHHHHHHHHhhhcC-CChHHHhHHHHHH
Q 004394 480 ---QDAP--YILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPPET------QKVLGAALAAGLAD-FHQDVHDRALFYH 547 (756)
Q Consensus 480 ---~~~~--~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~e~------~~~l~~vL~~~~~d-~d~dVrdRA~~Y~ 547 (756)
.++. .-+..++.-...++ .++|.+...|++-+-...|.-. ...+..++..+..- .+.++|.||....
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s~D-~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l 723 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQLSD-VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLF 723 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1111 12666666665666 8999888877776644444322 23444556655543 7999999998766
Q ss_pred HHh
Q 004394 548 RLL 550 (756)
Q Consensus 548 rLL 550 (756)
+=+
T Consensus 724 ~NL 726 (778)
T 3opb_A 724 FGL 726 (778)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.20 E-value=4.8e-07 Score=83.77 Aligned_cols=84 Identities=20% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHh
Q 004394 103 NFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHL 182 (756)
Q Consensus 103 Ntl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~l 182 (756)
..|.+-++|+|+.+|..|+++|+.++.++. ++.+.++|.|+++.||..|+.++.++.. ++.++.|..+
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a----~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~ 112 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQDERA----VEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKL 112 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCSHHH----HHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHH
Confidence 444455555555555555555555554332 2233344445555555555555554431 1223444444
Q ss_pred HhcCCChhHHHHHHHHH
Q 004394 183 MLNDPDPQVVANCLSAL 199 (756)
Q Consensus 183 LL~D~d~~Vv~~Al~aL 199 (756)
++|+|+.|..+|+.+|
T Consensus 113 -l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 113 -AETGTGFARKVAVNYL 128 (131)
T ss_dssp -TTSCCTHHHHHHHHHG
T ss_pred -HhCCCHHHHHHHHHHH
Confidence 3555555555554444
No 60
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.17 E-value=5.7e-07 Score=83.23 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 101 TINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
.++.+.+.|+|+|+.+|..|+.+|+.++.+. ++.+.++|.|+++.||..|+.++.++.. ++.++.|.
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~~-----~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~ 79 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGDEA-----FEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLI 79 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSSTT-----HHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCchH-----HHHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHH
Confidence 3567788889999999999999999998875 3677888999999999999999887653 23467777
Q ss_pred HhHhcCCChhHHHHHHHHHHHHHhh
Q 004394 181 HLMLNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 181 ~lLL~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
.+ ++|+|+.|...|+.+|..+...
T Consensus 80 ~~-L~d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 80 KL-LEDDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp HH-HHHCCTHHHHHHHHHHHHHCSH
T ss_pred HH-HcCCCHHHHHHHHHHHHHhCcH
Confidence 87 5899999999999999888663
No 61
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.16 E-value=0.00063 Score=81.91 Aligned_cols=282 Identities=12% Similarity=0.039 Sum_probs=173.7
Q ss_pred HHHHHHHcC---CCChHHHHHHHHHHhcCChh---hhHHHHHHHHHhhcCCCC--------hHHHHHHHHHHHHHhhhcC
Q 004394 102 INFLQRDCK---DEDPMIRGLALRSLCSLRVA---NLVEYLVGPLGLGLKDNN--------SYVRTVAVIGVLKLYHISA 167 (756)
Q Consensus 102 iNtl~KDL~---s~Np~iR~LALrtLs~I~~~---ei~e~l~~~v~~~L~d~~--------pyVRKkAalal~kl~~~~p 167 (756)
...|.+=+- +.++++|+-|+-.+|-|... +..+.+.+. |.+++ +.||.-|++++.-+|--..
T Consensus 394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~----L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~ 469 (963)
T 4ady_A 394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNI----IVENSGTSGDEDVDVLLHGASLGIGLAAMGSA 469 (963)
T ss_dssp HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHH----HHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHH----HcCccccccccccHHHHHHHHHHHHHHhcCCC
Confidence 345555554 67899999999999987543 344444444 44333 8999999999999885332
Q ss_pred CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhc-c-CChhHHHHHH
Q 004394 168 PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIK-E-FSEWAQCLVL 245 (756)
Q Consensus 168 ~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~-~-~~~W~Qi~IL 245 (756)
+++..+.|..+ +.|.+..+...|..+|.-|.--... ...+..|+..+. + -+.|..- +.
T Consensus 470 ----~eev~e~L~~~-L~dd~~~~~~~AalALGli~vGTgn--------------~~ai~~LL~~~~e~~~e~vrR~-aa 529 (963)
T 4ady_A 470 ----NIEVYEALKEV-LYNDSATSGEAAALGMGLCMLGTGK--------------PEAIHDMFTYSQETQHGNITRG-LA 529 (963)
T ss_dssp ----CHHHHHHHHHH-HHTCCHHHHHHHHHHHHHHHTTCCC--------------HHHHHHHHHHHHHCSCHHHHHH-HH
T ss_pred ----CHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccCC--------------HHHHHHHHHHHhccCcHHHHHH-HH
Confidence 24567788887 5676765554555566655321111 123444554332 2 3345544 33
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHH--hhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHH
Q 004394 246 ELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL--HLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVL 323 (756)
Q Consensus 246 ~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii--~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL 323 (756)
-.|+.....+++.+..+++.+.. +.++-|.+.++-++. +....+.. . +...|-.+.++.+.++|-.|.
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~----a---Iq~LL~~~~~d~~d~VRraAV 599 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNS----A---VKRLLHVAVSDSNDDVRRAAV 599 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHH----H---HHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHH----H---HHHHHHHhccCCcHHHHHHHH
Confidence 34444455566666656555442 567788888776553 22222211 1 122233344566778999999
Q ss_pred HHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhh
Q 004394 324 SHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQ 403 (756)
Q Consensus 324 ~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k 403 (756)
-.|..|....|+.+.+.+..+ . .+.+..||+-+---|-.++..+.-..+++-|..+..+.|..+++.++.++|.+...
T Consensus 600 iaLGlI~~g~~e~v~rlv~~L-~-~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 600 IALGFVLLRDYTTVPRIVQLL-S-KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHTSSSCSSHHHHTTTG-G-GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhccCCHHHHHHHHHHH-H-hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcC
Confidence 999888777776443333322 2 23446899888777776766555678888888888899999999999999999876
Q ss_pred cCCh-----hHHHHHHHHHhh
Q 004394 404 QYDV-----NAIVDRLLQFLE 419 (756)
Q Consensus 404 ~~~~-----~~~vd~Ll~LL~ 419 (756)
..+. ......+.+.+.
T Consensus 678 tnna~~~rva~~l~~L~~~~~ 698 (963)
T 4ady_A 678 QTEKLNPQVADINKNFLSVIT 698 (963)
T ss_dssp CCTTTCTTHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHh
Confidence 4432 334444444444
No 62
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.15 E-value=6.2e-05 Score=81.90 Aligned_cols=219 Identities=14% Similarity=0.075 Sum_probs=149.8
Q ss_pred CChHHHHHHHHHHhcCCh-----hhhH---HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cC---CcccCCCchHHH
Q 004394 112 EDPMIRGLALRSLCSLRV-----ANLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (756)
Q Consensus 112 ~Np~iR~LALrtLs~I~~-----~ei~---e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p---~~~~~~~~i~~L 179 (756)
.|+.++-.|..+|.+|.. +..+ .-.++.+.++|.++++.||..|+-++..+-.. ++ +.+.+.+.++.|
T Consensus 96 ~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 96 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 467788888777777742 2222 34589999999999999999999999888653 22 344456788889
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCC--hh--HHHHH---HHHHHhhC
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFS--EW--AQCLV---LELVAKYV 252 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~--~W--~Qi~I---L~lL~~y~ 252 (756)
.++|+...++.++.+|+.+|..+.....+. .... ......+..|+..+...+ +| .+... |+-|..+.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~n----k~~i--~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~ 249 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTEN----KADI--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 249 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHH----HHHH--HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhh----hHHH--HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc
Confidence 887567788999999999999987633211 1111 112234566666665443 34 33333 44444432
Q ss_pred CCChhHHHH-----HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHH
Q 004394 253 PLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (756)
Q Consensus 253 p~d~~e~~~-----il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l 326 (756)
..+++.... .+..+..+|++.+..|.-+|+.++..+....++..+.+.+ .+.++|+.+|.+++.++|-.+...|
T Consensus 250 a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 250 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp TTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 233333322 4677888899988999999999999997544443333332 3567899999999999999999999
Q ss_pred HHHHhhCCcc
Q 004394 327 HILVMRAPFI 336 (756)
Q Consensus 327 ~~L~~~~p~l 336 (756)
..|+...|..
T Consensus 330 ~nL~~~~~~~ 339 (354)
T 3nmw_A 330 RNLMANRPAK 339 (354)
T ss_dssp HHHHTTCCGG
T ss_pred HHHHcCCHHH
Confidence 9999887753
No 63
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.08 E-value=7.9e-05 Score=75.83 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=127.9
Q ss_pred CCccchhh-hhhhhccCCChhhHHHHHHHHHHccccCChH----HHHHHHHHHHHcC-CCChHHHHHHHHHHhcCCh---
Q 004394 59 IDVSAVFG-EMVMCSATSDIVLKKMCYLYVGNYAKVNPDL----ALLTINFLQRDCK-DEDPMIRGLALRSLCSLRV--- 129 (756)
Q Consensus 59 ~Dvs~lF~-~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el----~lL~iNtl~KDL~-s~Np~iR~LALrtLs~I~~--- 129 (756)
.|+...++ .+.+.+.+++...|+.+...+..+.+.++++ ..-+++.+.+=+. |+|+.+|..|+++++.+..
T Consensus 10 ~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~ 89 (242)
T 2qk2_A 10 VDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA 89 (242)
T ss_dssp BCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG
T ss_pred ccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh
Confidence 45555444 3567788999999999998888776653221 1234677777774 8999999999999888743
Q ss_pred ---hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 130 ---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 130 ---~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
...++.+++.|.+.+.|+++.||..|..|+..++...+ + ..+.+.+... ++++++.|...++..|..+....
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~--~~ll~~l~~~-l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--L--EAQQESIVES-LSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--H--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--H--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHc
Confidence 24567788899999999999999999999988887432 2 3456777776 58888999888888888764421
Q ss_pred -ccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 004394 207 -ASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (756)
Q Consensus 207 -~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~i 285 (756)
|+. . .......+++.+...|...+..|.-+|+.++
T Consensus 165 ~~~~-----------~---------------------------------~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 165 QPTA-----------L---------------------------------NKKLLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp CGGG-----------C---------------------------------CHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred CCCC-----------c---------------------------------cHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 110 0 0112234667777777778888877777777
Q ss_pred Hhhc
Q 004394 286 LHLT 289 (756)
Q Consensus 286 i~l~ 289 (756)
..+.
T Consensus 201 ~~l~ 204 (242)
T 2qk2_A 201 GTLI 204 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 64
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.07 E-value=0.00013 Score=81.99 Aligned_cols=286 Identities=12% Similarity=0.084 Sum_probs=179.6
Q ss_pred hHHHHHHHHHHHHHhhhcCCcccC---CCch----------HHHHHhHhcCC--------ChhH-------HHHHHHHHH
Q 004394 149 SYVRTVAVIGVLKLYHISAPTCID---ADFP----------PTLKHLMLNDP--------DPQV-------VANCLSALQ 200 (756)
Q Consensus 149 pyVRKkAalal~kl~~~~p~~~~~---~~~i----------~~L~~lLL~D~--------d~~V-------v~~Al~aL~ 200 (756)
+.+|..|+-|+..+-.-.|+.... ...+ +.+.++ +... +| | ..+|+.+|.
T Consensus 96 ~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~qAv~aL~ 173 (458)
T 3nmz_A 96 KEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEW-QEAHEPGMDQDKNP-MPAPVEHQICPAVCVLM 173 (458)
T ss_dssp HHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTSSSSCCCSCC---CCCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHH-HHhhccccccccCC-ccchhhHHHHHHHHHHH
Confidence 688888888888888877775411 1112 222232 1211 12 3 347888888
Q ss_pred HHHhhcccchhHHHHHHHhhccHHHHHHHHHHhcc-----------CChhHHHHHHHHHHhhCCCChhHH------HHHH
Q 004394 201 EIWSLEASTSEEASREREALISKPVIYYLLNRIKE-----------FSEWAQCLVLELVAKYVPLDSNEI------FDIM 263 (756)
Q Consensus 201 eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~-----------~~~W~Qi~IL~lL~~y~p~d~~e~------~~il 263 (756)
.|... +. +++ .++....+..|+..+.. .++-.|......|..++..++... ...+
T Consensus 174 nls~~-~e-----~R~--~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 174 KLSFD-EE-----HRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHTTS-HH-----HHH--HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HhcCC-HH-----HHH--HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 88542 21 111 11222234445554421 123457777888888776654322 2347
Q ss_pred HHHHHHhcccchHHHHHHHHHHHhhccc-cchhHHHHHH-HHHHHHHHh-hcCCCcchHHHHHHHHHHHHhhCC----cc
Q 004394 264 NLLEDRLQHANGAVVLSTIKVFLHLTLS-MTDVHQQVYE-RIKAPLLTL-VSSGSPEQSYAVLSHLHILVMRAP----FI 336 (756)
Q Consensus 264 ~~l~~~L~~~n~aVvleaik~ii~l~~~-~~~~~~~~l~-rl~~~L~~L-Lss~~~nirYvaL~~l~~L~~~~p----~l 336 (756)
..+..+|++.+..|...|+.++.++... ..+.+..+.+ ...++|+.+ +.+++++++-.++..+..|....+ .+
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I 325 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI 325 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 7788889988999999999999888653 2333333332 356788886 455678899888888887776321 22
Q ss_pred c-ccc-cceee--ecCCCC---HHHHHHHHHHHHHhc-----CCCCHHHH-----HHHHHHHhhhCCHHHHHHHHHHHHH
Q 004394 337 F-ASD-YKHFY--CQYNEP---SYVKKLKLEMLTAVA-----NESNTYEI-----VTELCEYAANVDIPIARESIRAVGK 399 (756)
Q Consensus 337 f-~~~-~~~f~--c~~~dp---~~IK~~kLdIL~~L~-----n~~Nv~~I-----v~EL~~Yl~~~D~~~~~~~I~aIg~ 399 (756)
. ... +..+. ....++ ..++..+.-+|..|+ +++|...| +.-|.+.+.+.+.+.+++++.+|+.
T Consensus 326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n 405 (458)
T 3nmz_A 326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN 405 (458)
T ss_dssp HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 2 111 11111 112222 258888888888887 55665554 4567888888889999999999999
Q ss_pred HHhhcCCh------hHHHHHHHHHhhhcCchhhHHHHHHHHHHHhhCCCcc
Q 004394 400 IALQQYDV------NAIVDRLLQFLEMEKDYVTAEALVLVKDLLRKYPQWS 444 (756)
Q Consensus 400 lA~k~~~~------~~~vd~Ll~LL~~~~~~v~~E~i~~i~~Il~~~p~~~ 444 (756)
++...++. ..++..|++++..+...+..++...+.+|....|..+
T Consensus 406 La~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky 456 (458)
T 3nmz_A 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKY 456 (458)
T ss_dssp HHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC-
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhh
Confidence 98543321 2367888999887777788888889999998888765
No 65
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.06 E-value=0.0001 Score=71.72 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=141.0
Q ss_pred CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccC-ChhHHHHHHHHHHhh
Q 004394 173 ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF-SEWAQCLVLELVAKY 251 (756)
Q Consensus 173 ~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~-~~W~Qi~IL~lL~~y 251 (756)
.++.+.+..+ |+|.=-.|+.||+.++..|.+..|+. ..+.+.+|+..+... +=-+.-.|=+.+...
T Consensus 31 ~~~l~~lI~~-LDDDlwtV~kNAl~vi~~i~~~~~el------------~epl~~kL~vm~~ksEaIpltqeIa~a~G~l 97 (253)
T 2db0_A 31 ESVLKKLIEL-LDDDLWTVVKNAISIIMVIAKTREDL------------YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQM 97 (253)
T ss_dssp HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHTTCGGG------------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hccHHHHHHHhHHHHHHHHHHHhHHH------------HHHHHHHHHHHHhhcccCchHHHHHHHHhHH
Confidence 5577888887 67777789999999999998766542 234566777655432 111223344444444
Q ss_pred CCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHh
Q 004394 252 VPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVM 331 (756)
Q Consensus 252 ~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~ 331 (756)
....|+....+++.+..-.+-..+-+-..-.-++-.+....+.+ +..+..-+.++++|++..=|.++|.-|.-+..
T Consensus 98 a~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l----~~~v~rdi~smltskd~~Dkl~aLnFi~alGe 173 (253)
T 2db0_A 98 AKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPML----MASIVRDFMSMLSSKNREDKLTALNFIEAMGE 173 (253)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred HHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHH----HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence 44455655556666655444444333332222332332222322 23344457788998888889999999988888
Q ss_pred hCCcccccccc-eeeecCCCCHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHh
Q 004394 332 RAPFIFASDYK-HFYCQYNEPSYVKKLKLEMLTAVANES-NTYEIVTELCEYAANVDIPIARESIRAVGKIAL 402 (756)
Q Consensus 332 ~~p~lf~~~~~-~f~c~~~dp~~IK~~kLdIL~~L~n~~-Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~ 402 (756)
.++..+.+.+. .|-.++|++.-||..+.|-|..++..+ -+..|+.+-++-+.+.+..+..++..++++++.
T Consensus 174 n~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 174 NSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp TTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred cCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 88888888874 455678999999999999999988543 277777777766678788888888888888764
No 66
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.05 E-value=5e-05 Score=78.50 Aligned_cols=209 Identities=14% Similarity=0.141 Sum_probs=141.9
Q ss_pred HHhhcCCCChHHHHHHHHHHHH-HhhhcCCccc-CC---CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc-cchhHH
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLK-LYHISAPTCI-DA---DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA-STSEEA 213 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~k-l~~~~p~~~~-~~---~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~-~~~~~~ 213 (756)
....+.++++.-||.|+.++.. +..-+|+... .. ++++.|...|-+|.|+.|+..|+.++..++..-. ..+..
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~- 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK- 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH-
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH-
Confidence 4556789999999999999999 8877777552 22 3456676763279999999999999999985332 11100
Q ss_pred HHHHHhhccHHHHHHHHHHhccCChhHHHHH---HHHHHhhCCCChhH--HHHHHHHHHHHhcccchHHHHHHHHHHHhh
Q 004394 214 SREREALISKPVIYYLLNRIKEFSEWAQCLV---LELVAKYVPLDSNE--IFDIMNLLEDRLQHANGAVVLSTIKVFLHL 288 (756)
Q Consensus 214 ~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~I---L~lL~~y~p~d~~e--~~~il~~l~~~L~~~n~aVvleaik~ii~l 288 (756)
-....++..++..+++..+=.+-.+ |+.+.......... ...+++.+...|+|.|+.|..++++++..+
T Consensus 100 ------~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 100 ------DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp ------HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1112356678888888665544333 33333333111111 446889999999999999999999988776
Q ss_pred ccccc---hhHHHHH-HHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc-ccccccceeeecCCCCHHHHHHHHHHH
Q 004394 289 TLSMT---DVHQQVY-ERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF-IFASDYKHFYCQYNEPSYVKKLKLEML 362 (756)
Q Consensus 289 ~~~~~---~~~~~~l-~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~-lf~~~~~~f~c~~~dp~~IK~~kLdIL 362 (756)
....+ ..-...+ ..+.+.|..++++.++++|=.+...+..+...-++ .|.+++..+ | .+|+.|+.-.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L-----d--~~k~~ki~~~ 245 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL-----D--NLKRKKIEET 245 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS-----C--HHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH-----h--HHHHHHHHHH
Confidence 53222 1112345 67888899999999999999999999999876554 466655432 2 3677777643
No 67
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.03 E-value=9.1e-05 Score=83.36 Aligned_cols=218 Identities=13% Similarity=0.077 Sum_probs=147.5
Q ss_pred CChHHHHHHHHHHhcCCh-----hhhH---HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cC---CcccCCCchHHH
Q 004394 112 EDPMIRGLALRSLCSLRV-----ANLV---EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SA---PTCIDADFPPTL 179 (756)
Q Consensus 112 ~Np~iR~LALrtLs~I~~-----~ei~---e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p---~~~~~~~~i~~L 179 (756)
.|+.++-.|..+|.+|.. +..+ .-.++.+.++|.++++.||..|+.++..+-.. ++ +.+.+.+.++.|
T Consensus 212 ~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~L 291 (458)
T 3nmz_A 212 YSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 291 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHH
Confidence 456777777666666532 2222 34589999999999999999999999888653 22 344456788888
Q ss_pred HHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccC--Chh--HHHHH---HHHHHhhC
Q 004394 180 KHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEF--SEW--AQCLV---LELVAKYV 252 (756)
Q Consensus 180 ~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~--~~W--~Qi~I---L~lL~~y~ 252 (756)
.++|+...++.+..+|+.+|..+....... .... ......+..|...+... ++| .+... |+-|..|.
T Consensus 292 V~lLl~s~~~~v~~~A~~aL~nLs~~~~~n----k~~I--~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~ 365 (458)
T 3nmz_A 292 MECALEVKKESTLKSVLSALWNLSAHCTEN----KADI--CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI 365 (458)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHHHHHCHHH----HHHH--HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHccCCHHH----HHHH--HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc
Confidence 887566778999999999999987633211 0111 11223455666666544 344 34434 44444432
Q ss_pred CCChhHHHH-----HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHH
Q 004394 253 PLDSNEIFD-----IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHL 326 (756)
Q Consensus 253 p~d~~e~~~-----il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l 326 (756)
..+++.... .+..+..+|++.+..|.-+|+.++..+....++....+.+ .+.++|+.+|.++++.++-.+...|
T Consensus 366 a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 366 ATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 234333322 4567788888888899999999999987544443333332 3567899999989999999999999
Q ss_pred HHHHhhCCc
Q 004394 327 HILVMRAPF 335 (756)
Q Consensus 327 ~~L~~~~p~ 335 (756)
..|+..+|.
T Consensus 446 ~nL~~~~p~ 454 (458)
T 3nmz_A 446 RNLMANRPA 454 (458)
T ss_dssp HHHHTCCSC
T ss_pred HHHHcCCHh
Confidence 999988774
No 68
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.02 E-value=0.00071 Score=82.39 Aligned_cols=205 Identities=14% Similarity=0.113 Sum_probs=99.1
Q ss_pred CCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC--------Ch---hhhHHHHHHHHHh
Q 004394 74 TSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RV---ANLVEYLVGPLGL 142 (756)
Q Consensus 74 s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I--------~~---~ei~e~l~~~v~~ 142 (756)
++|-..|+-+.-++..+- .+|+....+..-+. .+.++.+|-.|+.++-+. .. ..+-+.+...+.+
T Consensus 36 ~~~~~~r~~A~~~L~~~~-~~p~~~~~~~~lL~---~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~ 111 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQ-VSPQAWHFSWQLLQ---PDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITR 111 (963)
T ss_dssp CCCHHHHHHHHHHHHHHH-HSTTHHHHHHHHTS---TTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHH
Confidence 345555555555555532 34553222322222 245666666665555542 11 1122334444443
Q ss_pred hcCCCChHHHHHHHHHHHHHhhh-cCCcccCCCchHHHHHhHhcC-----CChhHHHHHHHHHHHHHhhcccchhHHHH-
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLND-----PDPQVVANCLSALQEIWSLEASTSEEASR- 215 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~-~p~~~~~~~~i~~L~~lLL~D-----~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~- 215 (756)
. .+..++||.+.+.++..+.+. +|+.- +++++.|..+ ++. .++...-.++.+|..+.+.-.+.......
T Consensus 112 ~-~~~~~~ir~kl~~~la~i~~~~~p~~W--p~~l~~l~~~-~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r 187 (963)
T 2x19_B 112 F-ASGSKIVLTRLCVALASLALSMMPDAW--PCAVADMVRL-FQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRK 187 (963)
T ss_dssp T-TTSCHHHHHHHHHHHHHHHHHHTTTTS--TTHHHHHHHH-HCC------CHHHHHHHHHHHHHHHHHHTTCCC-----
T ss_pred H-cCCCHHHHHHHHHHHHHHHHHhCcccc--chHHHHHHHH-HhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHH
Confidence 2 223699999999999999876 46543 5666777776 444 25556666776666655311000000000
Q ss_pred HH-Hhhcc--HHHHHHHHH-HhccC--ChhHHHHHHHHHHhhCCCCh--hHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Q 004394 216 ER-EALIS--KPVIYYLLN-RIKEF--SEWAQCLVLELVAKYVPLDS--NEIFDIMNLLEDRLQHANGAVVLSTIKVFLH 287 (756)
Q Consensus 216 ~~-~~ll~--~~~~~~Ll~-~l~~~--~~W~Qi~IL~lL~~y~p~d~--~e~~~il~~l~~~L~~~n~aVvleaik~ii~ 287 (756)
.. ...+. -+.+..++. .+... +.|....+|+++..+.+-+. .....+++.+...+. ++.+...|+.++..
T Consensus 188 ~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~ 265 (963)
T 2x19_B 188 GLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVN 265 (963)
T ss_dssp ----CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHH
Confidence 00 00000 011222222 23222 34888899998876654221 122456666665553 33344444555444
Q ss_pred h
Q 004394 288 L 288 (756)
Q Consensus 288 l 288 (756)
+
T Consensus 266 i 266 (963)
T 2x19_B 266 A 266 (963)
T ss_dssp H
T ss_pred H
Confidence 3
No 69
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.96 E-value=0.0044 Score=75.64 Aligned_cols=441 Identities=9% Similarity=0.035 Sum_probs=207.2
Q ss_pred ccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC--------Ch---hhhHHHHHHHH
Q 004394 72 SATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL--------RV---ANLVEYLVGPL 140 (756)
Q Consensus 72 ~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I--------~~---~ei~e~l~~~v 140 (756)
+.++|-..|+-+.-++..+ +.+|+....+..-+.+ +.|+.+|-.|+.++-+. .. ..+-+.++..+
T Consensus 16 ~~~~d~~~r~~A~~~L~~~-~~~p~~w~~~~~lL~~---~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l 91 (971)
T 2x1g_F 16 FYRSNSQNQAITHEWLTDA-EASPQAWQFSWQLMQL---GKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESI 91 (971)
T ss_dssp HHTSTTTC----CHHHHHT-TTSTHHHHHHHHHTCT---TSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHH
Confidence 3345666777777777774 4567754444333332 56888888887777653 11 12334445555
Q ss_pred HhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCC------ChhHHHHHHHHHHHHHh----hcccch
Q 004394 141 GLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDP------DPQVVANCLSALQEIWS----LEASTS 210 (756)
Q Consensus 141 ~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~------d~~Vv~~Al~aL~eI~~----~~~~~~ 210 (756)
.+.-. ..++||.+.+.++..+.+.+-..- +++++.+..+ +... ++.+.-.++.+|..+.+ .++...
T Consensus 92 ~~~~~-~~~~vr~kl~~~la~i~~~~~p~W--p~~l~~l~~~-~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~ 167 (971)
T 2x1g_F 92 VRFAG-GPKIVLNRLCISLGAYIVHMLGEW--PGAIEEVINT-FQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVK 167 (971)
T ss_dssp HHHTT-SCHHHHHHHHHHHHHHHHHTTCC--------HHHHH-HHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSC
T ss_pred HHhCC-CCHHHHHHHHHHHHHHHHHccccc--cHHHHHHHHH-HhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHH
Confidence 44332 358999999999999987642222 4556666665 3433 45666666666664442 211100
Q ss_pred hHHHHHHHhhccHH---HHHHHHHHhccC----Chh-HHHHHHHHHHhhCC--C-ChhHHHHHHHHHHHHhc--------
Q 004394 211 EEASREREALISKP---VIYYLLNRIKEF----SEW-AQCLVLELVAKYVP--L-DSNEIFDIMNLLEDRLQ-------- 271 (756)
Q Consensus 211 ~~~~~~~~~ll~~~---~~~~Ll~~l~~~----~~W-~Qi~IL~lL~~y~p--~-d~~e~~~il~~l~~~L~-------- 271 (756)
.....+....--+. .+.+++...... +.| .....|+++..|.. . +......+++.+.. |.
T Consensus 168 r~~~~~~l~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~~~~~ll~~l~~-L~~~~~~~~~ 246 (971)
T 2x1g_F 168 RVVLRAEIAKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEGCVTITAVLLE-VVHKCYWPCI 246 (971)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHH-HHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCccccccHHHHHHh-hhhhhccccc
Confidence 00000000000011 122222211111 013 46778888876433 1 11123445565554 41
Q ss_pred --------ccchHHHHHHHHHHHhhccc-c-chhHHHHHHHHHHHHHH----h---hcCCCc---chHHHHHHHHHHHHh
Q 004394 272 --------HANGAVVLSTIKVFLHLTLS-M-TDVHQQVYERIKAPLLT----L---VSSGSP---EQSYAVLSHLHILVM 331 (756)
Q Consensus 272 --------~~n~aVvleaik~ii~l~~~-~-~~~~~~~l~rl~~~L~~----L---Lss~~~---nirYvaL~~l~~L~~ 331 (756)
+.++.+.-.|+.++..+... . .+. ...+..+.+.+.. + +..++. +..+...+.+..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~ 325 (971)
T 2x1g_F 247 HAGDGCMTADENELAESCLKTMVNIIIQPDCHNY-PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVE 325 (971)
T ss_dssp C---CCCCHHHHHHHHHHHHHHHHHHHCSGGGGC-HHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHH
T ss_pred cccccccCcCCcHHHHHHHHHHHHHHcCcccccc-HHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 13445555666666655321 1 111 1122222222222 2 234453 666666777777776
Q ss_pred hCCcccc-----------cccc----eee-ec-C----CCCHHHHHHHHHHHHHhcCC----------CCH----HH---
Q 004394 332 RAPFIFA-----------SDYK----HFY-CQ-Y----NEPSYVKKLKLEMLTAVANE----------SNT----YE--- 373 (756)
Q Consensus 332 ~~p~lf~-----------~~~~----~f~-c~-~----~dp~~IK~~kLdIL~~L~n~----------~Nv----~~--- 373 (756)
.++..+. .++. .++ |. . .++..|....++.++.++.+ ... ..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (971)
T 2x1g_F 326 RHSTLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA 405 (971)
T ss_dssp HTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 6665443 2221 111 22 1 23445788888887777541 111 12
Q ss_pred -HHHHHHHHhh---hC-----C-------HHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhc--------Cch-hhHH
Q 004394 374 -IVTELCEYAA---NV-----D-------IPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME--------KDY-VTAE 428 (756)
Q Consensus 374 -Iv~EL~~Yl~---~~-----D-------~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~--------~~~-v~~E 428 (756)
++..+..-+. +. | .++|+.+...+..++..+++ .+++.+++++... .+. ..+-
T Consensus 406 ~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~--~~l~~~~~~l~~~l~~~~~~~~~w~~~ea 483 (971)
T 2x1g_F 406 HLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLND--YILEILAAMLDEAIADLQRHPTHWTKLEA 483 (971)
T ss_dssp HHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTT--HHHHHHHHHHHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhccCCCCcHHHHHH
Confidence 2233332221 10 1 13556666666667766652 3444444443321 121 2233
Q ss_pred HHHHHHHHHhhCCCcc-h---HHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCC----hHHHHHHHhhhhccCChHH
Q 004394 429 ALVLVKDLLRKYPQWS-H---DCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQD----APYILESLTENWEEEPSAE 500 (756)
Q Consensus 429 ~i~~i~~Il~~~p~~~-~---~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~----~~~iL~~l~~~f~~e~~~~ 500 (756)
++..+..|.+..++.. . ..+.++..+..+ -.+|.++..++|++|.|++.+.. .+.+++.+++.+ + +.
T Consensus 484 al~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~-d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~---~~ 558 (971)
T 2x1g_F 484 CIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYE-KLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N---SS 558 (971)
T ss_dssp HHHHHHHTTTC------CHHHHHHHHHHHSCTT-TSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H---SS
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHhcCcc-ccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C---hH
Confidence 3344444444332211 1 111222222111 12688899999999999876543 445566666555 2 45
Q ss_pred HHHHHHHHhhHhhhcCChhhHHHHHHHHH
Q 004394 501 VRLHLLTAVMKCFFKRPPETQKVLGAALA 529 (756)
Q Consensus 501 Vq~~lLtA~~Kl~~~~p~e~~~~l~~vL~ 529 (756)
|+...-.|+.++.-....+..+.+..+++
T Consensus 559 v~~~A~~al~~l~~~~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 559 MSAQATLGLKELCRDCQLQLKPYADPLLN 587 (971)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 77777778887765554444444443333
No 70
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0018 Score=76.49 Aligned_cols=322 Identities=11% Similarity=0.109 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHhcCCh-----hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCC----cccCCCchHHHHHhHh
Q 004394 114 PMIRGLALRSLCSLRV-----ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAP----TCIDADFPPTLKHLML 184 (756)
Q Consensus 114 p~iR~LALrtLs~I~~-----~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~----~~~~~~~i~~L~~lLL 184 (756)
+.+|.+|+-.|++++. ..-+..+.+.+++.|.+++...|+-|+-++.-+- .+|+ ...++++++.|.++ +
T Consensus 308 ~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~l-l 385 (778)
T 3opb_A 308 EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTM-I 385 (778)
T ss_dssp GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHH-H
Confidence 5677777777777652 1223456666777776665555777777776553 2333 22356677888887 5
Q ss_pred cC-CChhHHHHHHHHHHHHHhhcccchh-----------------H------------HHHH--HHhhccHHHHHHHHHH
Q 004394 185 ND-PDPQVVANCLSALQEIWSLEASTSE-----------------E------------ASRE--REALISKPVIYYLLNR 232 (756)
Q Consensus 185 ~D-~d~~Vv~~Al~aL~eI~~~~~~~~~-----------------~------------~~~~--~~~ll~~~~~~~Ll~~ 232 (756)
++ .|..+...++.+|..+....+.... + ...+ +..++....+..|...
T Consensus 386 k~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~L 465 (778)
T 3opb_A 386 KSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKRE 465 (778)
T ss_dssp TTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred hCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHH
Confidence 64 6788899999999888764442111 0 0001 1122333345556666
Q ss_pred hccCChhHHHHHHHHHHhhCCCChhHHHH-----HHHHHHHHhcccch---HHHHHHHHHHHhhccc-cchhH---HHHH
Q 004394 233 IKEFSEWAQCLVLELVAKYVPLDSNEIFD-----IMNLLEDRLQHANG---AVVLSTIKVFLHLTLS-MTDVH---QQVY 300 (756)
Q Consensus 233 l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-----il~~l~~~L~~~n~---aVvleaik~ii~l~~~-~~~~~---~~~l 300 (756)
+...++=.|..+.+.|..+... ++.... .+..|..+|.+.+. .+-..|+.++.++..+ ++... ...+
T Consensus 466 l~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 466 MHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred HcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 6677888888888888887533 333222 34566667765433 2677788888776532 12210 0111
Q ss_pred HHHHHHHHHhhcC-CCcc------------h-HHHHHHHHHHHHhhCC-------c-cccc--cccee-eecCCCCHHHH
Q 004394 301 ERIKAPLLTLVSS-GSPE------------Q-SYAVLSHLHILVMRAP-------F-IFAS--DYKHF-YCQYNEPSYVK 355 (756)
Q Consensus 301 ~rl~~~L~~LLss-~~~n------------i-rYvaL~~l~~L~~~~p-------~-lf~~--~~~~f-~c~~~dp~~IK 355 (756)
..++||+.||.. .+.. + +|-||.+|.-|+.... . ++.. ....+ .+..++...||
T Consensus 545 -~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 545 -NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp -THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred -cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 356899999972 1111 2 8999999998987641 1 3332 12222 24456677999
Q ss_pred HHHHHHHHHhcCCC-CH-HHH-----------HHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCCh-------hHHHHHHH
Q 004394 356 KLKLEMLTAVANES-NT-YEI-----------VTELCEYAANVDIPIARESIRAVGKIALQQYDV-------NAIVDRLL 415 (756)
Q Consensus 356 ~~kLdIL~~L~n~~-Nv-~~I-----------v~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~-------~~~vd~Ll 415 (756)
+.+.+++..|+... .+ ..+ ++-|..++...|.+.++.+.-+++.++..++.. ...++.++
T Consensus 624 rAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll 703 (778)
T 3opb_A 624 RSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAI 703 (778)
T ss_dssp HHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHH
Confidence 99999999987543 22 122 455778888889999999999999987655431 34678899
Q ss_pred HHhhh--cCchhhHHHHHHHHHHHhh
Q 004394 416 QFLEM--EKDYVTAEALVLVKDLLRK 439 (756)
Q Consensus 416 ~LL~~--~~~~v~~E~i~~i~~Il~~ 439 (756)
+++.. ..+.+..-.+.++.++..-
T Consensus 704 ~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 704 QVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 99988 6667778888888888863
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.80 E-value=0.0002 Score=76.00 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHHh-hcCCCChHHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH
Q 004394 137 VGPLGL-GLKDNNSYVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 137 ~~~v~~-~L~d~~pyVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
++++.+ +|.++++.||..|+.|+..+..-+|+ .+.+.+.++.|..+|-.++++.|..+|+.+|..|+..++.
T Consensus 83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~---- 158 (296)
T 1xqr_A 83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA---- 158 (296)
T ss_dssp HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH----
Confidence 345556 99999999999999999999887664 3345678888888743367899999999999998764321
Q ss_pred HHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcccc
Q 004394 213 ASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSM 292 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~ 292 (756)
....+.. ...+..+..+|++.+..|..+|+.++-++....
T Consensus 159 ------------~~~~~~~----------------------------~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 159 ------------GLLQFLR----------------------------LDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp ------------HHHHHHH----------------------------TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred ------------HHHHHHH----------------------------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 0001110 124566677778888889999999988876543
Q ss_pred chhHHHHHH-HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC
Q 004394 293 TDVHQQVYE-RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (756)
Q Consensus 293 ~~~~~~~l~-rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p 334 (756)
++....+.+ .+.++|+.+|.++++.++..+++.|..|+...+
T Consensus 199 ~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~ 241 (296)
T 1xqr_A 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241 (296)
T ss_dssp GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh
Confidence 443333332 466789999999999999999999998886543
No 72
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.79 E-value=0.00039 Score=73.68 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=137.1
Q ss_pred CcchHHHHHHHHHhhhcCCC--------CCChHHHHHHHHHHHHHHhcCCCcc------chhhhhhh-hccCCChhhHHH
Q 004394 18 GKGEVSDLKSQLRQLAGSRA--------PGIDDSKRELFKKVISYMTIGIDVS------AVFGEMVM-CSATSDIVLKKM 82 (756)
Q Consensus 18 ~k~ei~Elr~~L~~~~~~~~--------~~~~~~kk~~lkKlI~~~~lG~Dvs------~lF~~Vi~-l~~s~d~~~KkL 82 (756)
...+...+|+.++-+.+... ..+.+.|..++..+-.+. .+.|.. ..++.++. ++.+++..+|.-
T Consensus 23 ~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~ 101 (296)
T 1xqr_A 23 QRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWR 101 (296)
T ss_dssp CHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHH
Confidence 36778888888776643210 012246777775555444 333321 23566778 999999999999
Q ss_pred HHHHHHHccccCChHHHH-----HHHHHHHHcC-CCChHHHHHHHHHHhcCC--hhh----hH-HHHHHHHHhhcCCCCh
Q 004394 83 CYLYVGNYAKVNPDLALL-----TINFLQRDCK-DEDPMIRGLALRSLCSLR--VAN----LV-EYLVGPLGLGLKDNNS 149 (756)
Q Consensus 83 ~YLyl~~~~~~~~el~lL-----~iNtl~KDL~-s~Np~iR~LALrtLs~I~--~~e----i~-e~l~~~v~~~L~d~~p 149 (756)
+--.+.+.+..+++..-. ++..|.+=++ ++++.+|..|+.+|++|. .+. +. ...++.+.++|.++++
T Consensus 102 Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~ 181 (296)
T 1xqr_A 102 AAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQ 181 (296)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCH
Confidence 999999999887764222 3455665565 468999999999999983 233 22 2467789999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCc---ccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 150 YVRTVAVIGVLKLYHISAPT---CIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 150 yVRKkAalal~kl~~~~p~~---~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
.||+.|+.++..+...+++. +.+.++++.|.++ |..+|+.|+..|+.+|..|....
T Consensus 182 ~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~L-L~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 182 KLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL-VRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHH-HTSCCSTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHH-HcCCChhHHHHHHHHHHHHHhCC
Confidence 99999999999998877764 3467889999997 68899999999999999998753
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.74 E-value=0.0042 Score=75.96 Aligned_cols=261 Identities=12% Similarity=0.159 Sum_probs=142.0
Q ss_pred hhHHHHHHHHHHccccCChHHH-HHHHHHHHHcC------CCChHHHHHHHHHHhcCCh---------h------hhHHH
Q 004394 78 VLKKMCYLYVGNYAKVNPDLAL-LTINFLQRDCK------DEDPMIRGLALRSLCSLRV---------A------NLVEY 135 (756)
Q Consensus 78 ~~KkL~YLyl~~~~~~~~el~l-L~iNtl~KDL~------s~Np~iR~LALrtLs~I~~---------~------ei~e~ 135 (756)
+.|+-+.-.+..++...++..+ .+.+.+..=+. ++|...|=.|+.+++.|.. . ++.+.
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 4566666666666666665433 22333332232 5667788888888877621 1 45555
Q ss_pred HHHHHHhhcCCC---ChHHHHHHHHHHHHHhhhcC-CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc-c--
Q 004394 136 LVGPLGLGLKDN---NSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA-S-- 208 (756)
Q Consensus 136 l~~~v~~~L~d~---~pyVRKkAalal~kl~~~~p-~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~-~-- 208 (756)
+...|...+.|+ +|+||.+|+.++.++...-+ +.. ...++.+.+. +.|+++.|..+|..+|..++.... .
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l--~~~l~~l~~~-L~d~~~~V~~~A~~Al~~~~~~~~~~~~ 532 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL--IELMPILATF-LQTDEYVVYTYAAITIEKILTIRESNTS 532 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHH--HHHHHHHHHH-hCCCChhHHHHHHHHHHHHHhccccccc
Confidence 555566667777 99999999999999876532 222 2334455555 478899999999999999876311 0
Q ss_pred chhHHHHHHHhhccHHHHHHHHHHhccC---------ChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcc-----cc
Q 004394 209 TSEEASREREALISKPVIYYLLNRIKEF---------SEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQH-----AN 274 (756)
Q Consensus 209 ~~~~~~~~~~~ll~~~~~~~Ll~~l~~~---------~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~-----~n 274 (756)
..++.+++...-...+++.+|+..+... ++..---|-+++..+...-..-...+++.+...++. .+
T Consensus 533 ~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~ 612 (960)
T 1wa5_C 533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN 612 (960)
T ss_dssp CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred ccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 0000000000111134566666665553 232222222233333221112234455555554432 23
Q ss_pred hH---HHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccccccee
Q 004394 275 GA---VVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHF 344 (756)
Q Consensus 275 ~a---Vvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f 344 (756)
.. -+++|+.+++... .++....+.+.+.+++...|.....+..=-+++.+..++... .-|.+++..+
T Consensus 613 ~~~~~~~~e~l~~l~~~~--~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~ 682 (960)
T 1wa5_C 613 PRFTHYTFESIGAILNYT--QRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS-ATIPESIKPL 682 (960)
T ss_dssp HHHHHHHHHHHHHHHHTS--CGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC-SSCCTTTGGG
T ss_pred cHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc-cCCCHHHHHH
Confidence 32 3678887777652 223334455667777777776544444433777777777665 3344444433
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.0016 Score=67.05 Aligned_cols=137 Identities=13% Similarity=0.068 Sum_probs=107.1
Q ss_pred hhccCCChhhHHHHHHHHHH-ccccCChHH------HHHHHHHHHHc-CCCChHHHHHHHHHHhcCCh----h----hhH
Q 004394 70 MCSATSDIVLKKMCYLYVGN-YAKVNPDLA------LLTINFLQRDC-KDEDPMIRGLALRSLCSLRV----A----NLV 133 (756)
Q Consensus 70 ~l~~s~d~~~KkL~YLyl~~-~~~~~~el~------lL~iNtl~KDL-~s~Np~iR~LALrtLs~I~~----~----ei~ 133 (756)
..++|++-..||-++..+.. +.+..+++. .-.+..+.+-+ +|.|+.+|..|+++++.+.. + ...
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~ 102 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV 102 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence 45689999999999999999 875544322 23478889999 79999999999999988632 2 455
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhc-CCccc--CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHIS-APTCI--DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~-p~~~~--~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
..+++.|...+.|+.+.||..|..|+-.++... |.... -+.+++.|... ++.+++.|...++.+|..+....+
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~-l~~k~~~vk~~al~~l~~~~~~~~ 178 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEH-MKHKTPQIRMECTQLFNASMKEEK 178 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHH-TTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHHcC
Confidence 678899999999999999999999999999754 43321 12466777776 588899999999999998876443
No 75
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.40 E-value=0.028 Score=67.78 Aligned_cols=209 Identities=14% Similarity=0.099 Sum_probs=139.1
Q ss_pred HHHHHHhcCCCccchhhhhhh-hccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHh---
Q 004394 50 KVISYMTIGIDVSAVFGEMVM-CSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLC--- 125 (756)
Q Consensus 50 KlI~~~~lG~Dvs~lF~~Vi~-l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs--- 125 (756)
--+.+.+.|--=....-.++. ++.+.+-..+|..=+.+....-.+++.+-.++..+.. +.||++|..|.-+++
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~---~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLA---SDESLLRYGGAFTIALAY 570 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHh
Confidence 344555556432223344443 3345566778888888887766778877777777765 579999998888776
Q ss_pred -cCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 126 -SLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 126 -~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
..+....++.+... +..|.+.+||+.|++|+..+.-..|+. .+++.++|.++.|+.|..+|..+|..++.
T Consensus 571 aGTGn~~aIq~LL~~---~~~d~~d~VRraAViaLGlI~~g~~e~------v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 571 AGTGNNSAVKRLLHV---AVSDSNDDVRRAAVIALGFVLLRDYTT------VPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp TTSCCHHHHHHHHHH---HHHCSCHHHHHHHHHHHHHHTSSSCSS------HHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHH---hccCCcHHHHHHHHHHHHhhccCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 45666666655433 446888999999999999886655543 45555555688999999999999998876
Q ss_pred hcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHhc--ccchHHH
Q 004394 205 LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNE----IFDIMNLLEDRLQ--HANGAVV 278 (756)
Q Consensus 205 ~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e----~~~il~~l~~~L~--~~n~aVv 278 (756)
.+|. +.++.-|-....+.+++.....+-.|......+.+. ...++..+..... |....+.
T Consensus 642 Gn~~--------------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~ 707 (963)
T 4ady_A 642 GKGL--------------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAK 707 (963)
T ss_dssp SSCC--------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHH
T ss_pred CCCc--------------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHH
Confidence 4443 123333334457888888888888888776554332 4556666666654 4556666
Q ss_pred HHHHHH
Q 004394 279 LSTIKV 284 (756)
Q Consensus 279 leaik~ 284 (756)
|.++-.
T Consensus 708 fga~iA 713 (963)
T 4ady_A 708 FGACVA 713 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.30 E-value=0.0016 Score=65.97 Aligned_cols=179 Identities=9% Similarity=0.065 Sum_probs=136.1
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCccc---CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccch
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI---DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTS 210 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~---~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~ 210 (756)
+.....+..+|.|.++.||-.|.+++-++.+.-|+... -+++.+.+.++ +.+.|-.|...|+.+|..+....|
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~l-lk~~dEkval~A~r~L~~LLe~vp--- 107 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINA-LSQENEKVTIKALRALGYLVKDVP--- 107 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-CCSTTHHHHHHHHHHHHHHHTTCC---
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHcCCC---
Confidence 44566788899999999999999999999987554331 14456777776 689999999999999999987655
Q ss_pred hHHHHHHHhhccHHHHHHHH----HHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004394 211 EEASREREALISKPVIYYLL----NRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (756)
Q Consensus 211 ~~~~~~~~~ll~~~~~~~Ll----~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii 286 (756)
+++..+.++. +.+++.++-.+.++.+.+....+.+ ...++++.+..++.+.|.-|--.+++++.
T Consensus 108 ----------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~--~~~~V~~~l~sLl~Skd~~vK~agl~~L~ 175 (265)
T 3b2a_A 108 ----------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLE--DSKLVRTYINELVVSPDLYTKVAGFCLFL 175 (265)
T ss_dssp ----------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSC--CCHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCccc--chHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 2333444444 4456789999999999999985543 24578899999998899999999999999
Q ss_pred hhccccch--hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 287 HLTLSMTD--VHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 287 ~l~~~~~~--~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
.+.....+ +-..+++. +-.||++.|+.++-.||..+..++.+
T Consensus 176 eia~~S~D~~i~~~I~~e----I~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 176 NMLNSSADSGHLTLILDE----IPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHGGGCSSCCCGGGTTTT----HHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HhhcccCCHHHHHHHHHH----HHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 88764332 22222222 34588999999999999999888755
No 77
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.0096 Score=58.11 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=115.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHH
Q 004394 134 EYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEA 213 (756)
Q Consensus 134 e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~ 213 (756)
+.+...+.+.|.|.-+-|||.|+.-+.-+.+-+|+.. +-....|.-++-.+.-.-.-...-.++..+..-+|+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~--epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe----- 103 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLY--EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE----- 103 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGH--HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH-----
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHH--HHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH-----
Confidence 4455667788888888899999888888888888876 344555555433343322212222333333333332
Q ss_pred HHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccc
Q 004394 214 SREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMT 293 (756)
Q Consensus 214 ~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~ 293 (756)
++ ++.+.-|...+.--+|=..+.+=-.|......+|+.+..+..-+..++.+.|..=-+.|.+.|-.++.+..
T Consensus 104 ------~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~ 176 (253)
T 2db0_A 104 ------LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF 176 (253)
T ss_dssp ------HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH
T ss_pred ------HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc
Confidence 11 22344455555555777777766677666666777777777777778888787777777777777765433
Q ss_pred hhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCc
Q 004394 294 DVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPF 335 (756)
Q Consensus 294 ~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~ 335 (756)
......+.| |..||.+++--+|-.+.+.+..++..+|.
T Consensus 177 ~yv~PfLpr----L~aLL~D~deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 177 KYVNPFLPR----IINLLHDGDEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp HHHGGGHHH----HHGGGGCSSHHHHHHHHHHHHHHHTSCHH
T ss_pred cccCcchHH----HHHHHcCcchhhhHHHHHHHHHHHHcCHH
Confidence 221111222 45678887777888888888888888876
No 78
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.13 E-value=0.84 Score=55.18 Aligned_cols=138 Identities=12% Similarity=0.083 Sum_probs=89.0
Q ss_pred HHHHHHHHc----CCCChHHHHHHHHHHhcCCh------hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh---cC
Q 004394 101 TINFLQRDC----KDEDPMIRGLALRSLCSLRV------ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI---SA 167 (756)
Q Consensus 101 ~iNtl~KDL----~s~Np~iR~LALrtLs~I~~------~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~---~p 167 (756)
+.+.+..-+ .+.|...+-.|+.++++|.. ...++.+++.+. .+.+++|.||.+|+.++.++.+. +|
T Consensus 446 ~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~-~l~~~~~~vr~~~~~~l~~~~~~l~~~~ 524 (963)
T 2x19_B 446 LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIP-RISISNVQLADTVMFTIGALSEWLADHP 524 (963)
T ss_dssp HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGG-GSCCCSHHHHHHHHHHHHHTHHHHHHCH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHHHhCH
Confidence 344444445 56778888788888888743 234556666443 34557899999999999987653 34
Q ss_pred CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhcc--CChhHHHHHH
Q 004394 168 PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKE--FSEWAQCLVL 245 (756)
Q Consensus 168 ~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~--~~~W~Qi~IL 245 (756)
+.+ +..++.+... +.| +.|...|..+|..+++..+... ...-.+++.+|...+.. .+.=.+..++
T Consensus 525 ~~l--~~vl~~l~~~-l~~--~~V~~~A~~al~~l~~~~~~~l--------~p~~~~il~~l~~~l~~~~~~~~~~~~~~ 591 (963)
T 2x19_B 525 VMI--NSVLPLVLHA-LGN--PELSVSSVSTLKKICRECKYDL--------PPYAANIVAVSQDVLMKQIHKTSQCMWLM 591 (963)
T ss_dssp HHH--TTTHHHHHHH-TTC--GGGHHHHHHHHHHHHHHTGGGC--------TTTHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHH--HHHHHHHHHH-hCC--chHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 444 5667777776 455 8899999999999986433211 00112344555554443 4556788888
Q ss_pred HHHHhhC
Q 004394 246 ELVAKYV 252 (756)
Q Consensus 246 ~lL~~y~ 252 (756)
+.++...
T Consensus 592 eai~~i~ 598 (963)
T 2x19_B 592 QALGFLL 598 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888764
No 79
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.06 E-value=0.72 Score=56.70 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=50.4
Q ss_pred CchhHHHHHHhHhccCCCCCCCh------HHHHHHHhhhhcc-----CChHHHHH---HHHHHhhHhhhcCChhhHHHHH
Q 004394 460 QEPKAKAALIWMLGEYSQDMQDA------PYILESLTENWEE-----EPSAEVRL---HLLTAVMKCFFKRPPETQKVLG 525 (756)
Q Consensus 460 ~~p~ak~a~iWiLGEy~~~i~~~------~~iL~~l~~~f~~-----e~~~~Vq~---~lLtA~~Kl~~~~p~e~~~~l~ 525 (756)
.+.+.+.+++|.+|--++.+... +.++..+.. +.+ .+.+.++. +++....+++...|.-...++.
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~-l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLD-LTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHH-HTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35567889999999776554332 223333322 111 12255554 4555555655555544555666
Q ss_pred HHHHhhhcCCChHHHhHHHHHHH
Q 004394 526 AALAAGLADFHQDVHDRALFYHR 548 (756)
Q Consensus 526 ~vL~~~~~d~d~dVrdRA~~Y~r 548 (756)
.+++. ..+.++.||.+|+.-..
T Consensus 544 ~ll~~-l~~~~~~V~~~A~~al~ 565 (1049)
T 3m1i_C 544 KLFEF-MHETHEGVQDMACDTFI 565 (1049)
T ss_dssp HHHHH-TTSSCHHHHHHHHHHHH
T ss_pred HHHHH-hcCCCHHHHHHHHHHHH
Confidence 66653 45678999999986543
No 80
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=97.02 E-value=0.02 Score=62.07 Aligned_cols=211 Identities=13% Similarity=0.084 Sum_probs=146.3
Q ss_pred ChhhHHHHHHHHHHccccCChHH--H----HHHHHHHHHcCCCChHHHHHHHHHHhcCCh---hhhHH-----HHHHHHH
Q 004394 76 DIVLKKMCYLYVGNYAKVNPDLA--L----LTINFLQRDCKDEDPMIRGLALRSLCSLRV---ANLVE-----YLVGPLG 141 (756)
Q Consensus 76 d~~~KkL~YLyl~~~~~~~~el~--l----L~iNtl~KDL~s~Np~iR~LALrtLs~I~~---~ei~e-----~l~~~v~ 141 (756)
+...|+-+--++.++...+++.- + =++..|.+=|.++|+.++..|..+|++|.. ++.-+ -.++.+.
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 45678888888888876554321 2 137888888999999999887777766643 22222 2467778
Q ss_pred hh-cCCCChHHHHHHHHHHHHHhhhcC----CcccCCCchHHHHHhHhcCCCh----hHHHHHHHHHHHHHh---hcccc
Q 004394 142 LG-LKDNNSYVRTVAVIGVLKLYHISA----PTCIDADFPPTLKHLMLNDPDP----QVVANCLSALQEIWS---LEAST 209 (756)
Q Consensus 142 ~~-L~d~~pyVRKkAalal~kl~~~~p----~~~~~~~~i~~L~~lLL~D~d~----~Vv~~Al~aL~eI~~---~~~~~ 209 (756)
++ +.+.++.+++.|+-++..+-..++ ..+...+.++.|.++ +.+.+. .|+.+|+.+|..+.. .++.
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~l-L~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~- 254 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT-LTYRSQTNTLAIIESGGGILRNVSSLIATNED- 254 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHH-TTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHH-hccCCCcccHHHHHHHHHHHHHHHhhccCCHH-
Confidence 86 466789999999988888765332 222257889999997 565544 488888888988874 1221
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHH-----HHHHHHHhcccchHHHHHHHHH
Q 004394 210 SEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDI-----MNLLEDRLQHANGAVVLSTIKV 284 (756)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~i-----l~~l~~~L~~~n~aVvleaik~ 284 (756)
.+..++....+..|+..|...++-.|......|..+...+++....+ +..+..+|++.+..+..+|+.+
T Consensus 255 ------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a 328 (354)
T 3nmw_A 255 ------HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA 328 (354)
T ss_dssp ------HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred ------HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 11122333457778888888888889999999999886665544443 4566777788888888888888
Q ss_pred HHhhccccch
Q 004394 285 FLHLTLSMTD 294 (756)
Q Consensus 285 ii~l~~~~~~ 294 (756)
+..+....+.
T Consensus 329 L~nL~~~~~~ 338 (354)
T 3nmw_A 329 LRNLMANRPA 338 (354)
T ss_dssp HHHHHTTCCG
T ss_pred HHHHHcCCHH
Confidence 8887655443
No 81
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.019 Score=59.44 Aligned_cols=188 Identities=12% Similarity=0.087 Sum_probs=118.8
Q ss_pred HHhhcCCCChHHHHHHHHHHHHHhhhcCCccc-------CCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhH
Q 004394 140 LGLGLKDNNSYVRTVAVIGVLKLYHISAPTCI-------DADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEE 212 (756)
Q Consensus 140 v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~-------~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~ 212 (756)
+..-|.|+++-.|+.|+..+.+++...+.... -..+...++.. +.|.|..|+..++.++..+...-......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~-l~DsN~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQY-ITDSNVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHH-TTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55678999999999999999999986554321 12345667776 69999999999999998887532211000
Q ss_pred HHHHHHhhccHHHHHHHHHH-hccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhcc-
Q 004394 213 ASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTL- 290 (756)
Q Consensus 213 ~~~~~~~ll~~~~~~~Ll~~-l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~- 290 (756)
.......-..++..|+.. +.+..+-.....++.+..+.... .....+++.+.+.++|.|+-|..+|+..+..+-.
T Consensus 93 --~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-~~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 93 --NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-TSITQSVELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-SSSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred --cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 000000001234455554 56666666555666555443111 0123466777888999999999999988765421
Q ss_pred ---ccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhh
Q 004394 291 ---SMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMR 332 (756)
Q Consensus 291 ---~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~ 332 (756)
..-.. ...+..+...+..+++++++++|-.+...+..+-..
T Consensus 170 fg~~~~~~-k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 170 FGLTNVNV-QTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HTTTTCCH-HHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred hCCCcCCc-hhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 11111 223445556678889999999999999988777543
No 82
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=96.86 E-value=0.99 Score=56.51 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=54.8
Q ss_pred cCCchhHHHHHHhHhccCCCCCCC----hHHHHHHHhhhhccC-----------ChHHHHHHHHHHhhHhhhcCChhhHH
Q 004394 458 NVQEPKAKAALIWMLGEYSQDMQD----APYILESLTENWEEE-----------PSAEVRLHLLTAVMKCFFKRPPETQK 522 (756)
Q Consensus 458 ~i~~p~ak~a~iWiLGEy~~~i~~----~~~iL~~l~~~f~~e-----------~~~~Vq~~lLtA~~Kl~~~~p~e~~~ 522 (756)
+..+|.++...+-++|.|+..+.. .+.+|+.+...+... ...++|...-+++.++.-.+|+...+
T Consensus 542 ~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~p 621 (1204)
T 3a6p_A 542 DTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVLP 621 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456888888888888777666543 355666666665431 12479999999999988877654433
Q ss_pred HHHHHHHhh---hcCCC-hHHHhHHHHHHHHh
Q 004394 523 VLGAALAAG---LADFH-QDVHDRALFYHRLL 550 (756)
Q Consensus 523 ~l~~vL~~~---~~d~d-~dVrdRA~~Y~rLL 550 (756)
.+..+.+.. ..... ..-.+|..+|..++
T Consensus 622 ~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~ 653 (1204)
T 3a6p_A 622 NFDMLYNHVKQLLSNELLLTQMEKCALMEALV 653 (1204)
T ss_dssp GHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccHHHHHHHHHHHH
Confidence 333333322 11112 34455555555543
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=96.86 E-value=0.18 Score=61.34 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=54.6
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHhhcCC-----CChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhH---h-cCCCh
Q 004394 119 LALRSLCSLRVANLVEYLVGPLGLGLKD-----NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM---L-NDPDP 189 (756)
Q Consensus 119 LALrtLs~I~~~ei~e~l~~~v~~~L~d-----~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lL---L-~D~d~ 189 (756)
-+|+.++.+...++.+.+.+.+...+.+ .++..|..|++|+..+....++.. ...++.+..++ . +|.++
T Consensus 443 ~~l~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~--~~~l~~l~~~l~~l~~~d~~~ 520 (971)
T 2x1g_F 443 DTFMYCYDVLNDYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE--KRQIPRLMRVLAEIPYEKLNV 520 (971)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------CHHHHHHHHHHHSCTTTSCH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh--hHHHHHHHHHHHhcCccccCH
Confidence 3577888887788889999888888865 678899999999888876544322 22333332221 1 25678
Q ss_pred hHHHHHHHHHHHHH
Q 004394 190 QVVANCLSALQEIW 203 (756)
Q Consensus 190 ~Vv~~Al~aL~eI~ 203 (756)
.|...++.++..+.
T Consensus 521 ~vr~~a~~~l~~~~ 534 (971)
T 2x1g_F 521 KLLGTALETMGSYC 534 (971)
T ss_dssp HHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHH
Confidence 88877777776654
No 84
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.013 Score=60.75 Aligned_cols=174 Identities=11% Similarity=0.097 Sum_probs=120.1
Q ss_pred hhccCCChhhHHHHHHHHHHccccCChHH---------HHHHHHHHHHcCCCChHHHHHHHHHHhcCC------------
Q 004394 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLA---------LLTINFLQRDCKDEDPMIRGLALRSLCSLR------------ 128 (756)
Q Consensus 70 ~l~~s~d~~~KkL~YLyl~~~~~~~~el~---------lL~iNtl~KDL~s~Np~iR~LALrtLs~I~------------ 128 (756)
.-+.+.+...|+=||-.+...+...+... .-....+.|-+.|.|..+...|+.+++.+.
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~ 95 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAH 95 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccch
Confidence 56778888999999988877665433221 112456788889999999999988887541
Q ss_pred hhhhHHHHHHHHH-hhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 129 VANLVEYLVGPLG-LGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 129 ~~ei~e~l~~~v~-~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
....+..+++.+. +++.|..+-+|..|.-|+..+....... ..+.+.+... +...+|.|+..++..|..+...-+
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~-l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPF-FEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGG-GGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHhC
Confidence 1224555666655 6799999999999999998887653221 2245667676 689999999999988887754211
Q ss_pred cchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 004394 208 STSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDS-NEIFDIMNLLEDRLQHANGAVVLSTIKVFL 286 (756)
Q Consensus 208 ~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~-~e~~~il~~l~~~L~~~n~aVvleaik~ii 286 (756)
.. .+ ++ .....++..+...+.++|+.|.-+|++++.
T Consensus 172 ~~----------~~---------------------------------~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~ 208 (278)
T 4ffb_C 172 LT----------NV---------------------------------NVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIV 208 (278)
T ss_dssp TT----------TC---------------------------------CHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred CC----------cC---------------------------------CchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 00 00 11 112235667778899999999999999987
Q ss_pred hhcc
Q 004394 287 HLTL 290 (756)
Q Consensus 287 ~l~~ 290 (756)
.+..
T Consensus 209 ~ly~ 212 (278)
T 4ffb_C 209 EIYK 212 (278)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6643
No 85
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.60 E-value=0.63 Score=51.82 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=105.9
Q ss_pred hhhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhc
Q 004394 65 FGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGL 144 (756)
Q Consensus 65 F~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L 144 (756)
|-.++.... .+...|||+=-++..|++.-|++.--++|++..=|.|.+..||.-|+|.+..++..+.+.-+...+.++|
T Consensus 31 y~~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlL 109 (507)
T 3u0r_A 31 YQVILDGVK-GGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLL 109 (507)
T ss_dssp HHHHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHH
Confidence 444555433 3688999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 145 KDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 145 ~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
+..++--+...=-++..+++.+|... +...+..+ .. .|..|.-.++..|.+-..
T Consensus 110 qtdd~~E~~~V~~sL~sllk~Dpk~t----l~~lf~~i-~~-~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 110 QTDDSAEFNLVNNALLSIFKMDAKGT----LGGLFSQI-LQ-GEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHH-HH-SCHHHHHHHHHHHHHHGG
T ss_pred hccchHHHHHHHHHHHHHHhcChHHH----HHHHHHHH-cc-cchHHHHHHHHHHHHHHh
Confidence 98888777777777777888877654 22233332 23 467788777777766443
No 86
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.51 E-value=2.5 Score=51.66 Aligned_cols=151 Identities=15% Similarity=0.137 Sum_probs=78.9
Q ss_pred HHHHHHHHhhc-CCCChHHHHHHHHHHHHHhhh-cCCcccCCCchHHHHHhHhcCCCh-hHHHHHHHHHHHHHhhccc--
Q 004394 134 EYLVGPLGLGL-KDNNSYVRTVAVIGVLKLYHI-SAPTCIDADFPPTLKHLMLNDPDP-QVVANCLSALQEIWSLEAS-- 208 (756)
Q Consensus 134 e~l~~~v~~~L-~d~~pyVRKkAalal~kl~~~-~p~~~~~~~~i~~L~~lLL~D~d~-~Vv~~Al~aL~eI~~~~~~-- 208 (756)
+.+...+.+.- .+..++||.|.+.++..++.. +|+.- +++++.+..+ ++.+++ .++...+.+|..|.+.-..
T Consensus 88 ~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~~W--p~~i~~l~~~-~~~~~~~~~~~~~LriL~~i~EEv~~~~ 164 (980)
T 3ibv_A 88 DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPSNW--NDFFASLQGV-IAASSQSEFSNFYLKVLLSIGDEIADSL 164 (980)
T ss_dssp HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTTTC--TTHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcccC--chHHHHHHHH-hcCCChhHHHHHHHHHHHHhHHHHHhcc
Confidence 34444444421 135689999999999999875 67655 6677777776 343333 3444455555533221000
Q ss_pred --chhH-HHHH--HHhhcc----HHHHHHHHHHhc----cCChhHHHHHHHHHHhhCCCCh-hHH--HHHHHHHHHHhcc
Q 004394 209 --TSEE-ASRE--REALIS----KPVIYYLLNRIK----EFSEWAQCLVLELVAKYVPLDS-NEI--FDIMNLLEDRLQH 272 (756)
Q Consensus 209 --~~~~-~~~~--~~~ll~----~~~~~~Ll~~l~----~~~~W~Qi~IL~lL~~y~p~d~-~e~--~~il~~l~~~L~~ 272 (756)
...+ ..+. ....+. +.++...+..+. ..++=.....|+++..|...-+ ... ..+++.+...|..
T Consensus 165 ~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~ 244 (980)
T 3ibv_A 165 VLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI 244 (980)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS
T ss_pred cccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC
Confidence 0000 0000 000000 001112222222 2355567889999999987532 211 3566666666654
Q ss_pred cchHHHHHHHHHHHhhc
Q 004394 273 ANGAVVLSTIKVFLHLT 289 (756)
Q Consensus 273 ~n~aVvleaik~ii~l~ 289 (756)
+.+.-+|+.|+..+.
T Consensus 245 --~~~r~~A~ecL~ei~ 259 (980)
T 3ibv_A 245 --EELRCAACETMTEIV 259 (980)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHH
Confidence 567777777776653
No 87
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=96.43 E-value=0.23 Score=61.13 Aligned_cols=107 Identities=13% Similarity=-0.027 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHcCC--CChHHHHHHHHHHhcCC---h----hhhHHHHHHHHHhhcC-----CCChHHHHHHHHHHHH
Q 004394 96 DLALLTINFLQRDCKD--EDPMIRGLALRSLCSLR---V----ANLVEYLVGPLGLGLK-----DNNSYVRTVAVIGVLK 161 (756)
Q Consensus 96 el~lL~iNtl~KDL~s--~Np~iR~LALrtLs~I~---~----~ei~e~l~~~v~~~L~-----d~~pyVRKkAalal~k 161 (756)
|..-...+.+.+-+.+ .+-..|-.|+-++|+|. . ..++..+++.+..++. |+.+.||.+++.++.+
T Consensus 447 ~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGr 526 (1023)
T 4hat_C 447 DTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQ 526 (1023)
T ss_dssp HHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHH
Confidence 5544566777776665 45677766777777763 1 2356677777777776 4678899999999988
Q ss_pred Hhh---hcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhh
Q 004394 162 LYH---ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 162 l~~---~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
..+ .+|+.+ +..+..|-+. +.|++++|..+|..++..|++.
T Consensus 527 y~~wl~~~~~~L--~~vl~~L~~~-l~~~~~~v~~~A~~al~~l~~~ 570 (1023)
T 4hat_C 527 YPRFLKAHWNFL--RTVILKLFEF-MHETHEGVQDMACDTFIKIVQK 570 (1023)
T ss_dssp CHHHHHHCHHHH--HHHHHHHHHH-TTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHH--HHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHH
Confidence 655 345543 2334444454 4688999999999999999864
No 88
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.43 E-value=1.4 Score=54.09 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=44.7
Q ss_pred HHHHHhhcC-CCChHHHHHHHHHHHHHhhhcC-CcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhc
Q 004394 137 VGPLGLGLK-DNNSYVRTVAVIGVLKLYHISA-PTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 137 ~~~v~~~L~-d~~pyVRKkAalal~kl~~~~p-~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
...+.+++. ..++.+|+.|+-|+..+...-| ..+.+..+++.+.+.++. ++.+...|+..|.+|....
T Consensus 196 ~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l~--~~~~~~~a~~~L~~i~~~~ 265 (1049)
T 3m1i_C 196 FKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLK 265 (1049)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhCC--CHhHHHHHHHHHHHHHhCC
Confidence 333444443 3467899999999888766444 222235566666643343 7888999999999998753
No 89
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.43 E-value=0.49 Score=54.72 Aligned_cols=296 Identities=17% Similarity=0.164 Sum_probs=175.3
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcC-CChhHHHHHHHHHHHHHhhcccchh-----HHH-----
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLND-PDPQVVANCLSALQEIWSLEASTSE-----EAS----- 214 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D-~d~~Vv~~Al~aL~eI~~~~~~~~~-----~~~----- 214 (756)
..-..=||.|+.++-.+-+.+|..+-..++.. |...|-+| .|..++..++-.|..+...++.... +..
T Consensus 33 ~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~-li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~ 111 (651)
T 3grl_A 33 STLLDDRRNAVRALKSLSKKYRLEVGIQAMEH-LIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGS 111 (651)
T ss_dssp CCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHH-HHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhHHHhhhhhHHH-HHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHH
Confidence 34566799999999999999998875444444 44444566 5788888888888666543321100 000
Q ss_pred --HHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCCCChhHHHH-------HHHHHHHHhcccchHHHHHHHHHH
Q 004394 215 --REREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFD-------IMNLLEDRLQHANGAVVLSTIKVF 285 (756)
Q Consensus 215 --~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~-------il~~l~~~L~~~n~aVvleaik~i 285 (756)
-+. ..-.+..+.-|++.|...+.|.....+++|...+...+++..+ -+..+...|......|.-||+-++
T Consensus 112 ~~~d~-f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 112 QFTEI-FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHH-HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHH-HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 011 1112345667888888999999999999998887666654433 245667778888889999999999
Q ss_pred HhhccccchhHHHH-HHHHHHHHHHhhcCCCc----chHHHHHHHHHHHHhhCC---ccccc-----ccceeeecCCCCH
Q 004394 286 LHLTLSMTDVHQQV-YERIKAPLLTLVSSGSP----EQSYAVLSHLHILVMRAP---FIFAS-----DYKHFYCQYNEPS 352 (756)
Q Consensus 286 i~l~~~~~~~~~~~-l~rl~~~L~~LLss~~~----nirYvaL~~l~~L~~~~p---~lf~~-----~~~~f~c~~~dp~ 352 (756)
..++...+++++-+ ++.+...|..++.+... .+--=.|..+.-|++.+| .+|.. .+..++- .+++.
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~-~~~~~ 269 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFE-VGDEN 269 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGC-CCSCS
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhC-CCccc
Confidence 99998877764322 23344456666643221 333344555566666554 23322 1111111 11111
Q ss_pred --------HHHHHHHHHHHHhcCCCCHH-------------HHHHHHHHHhhh--CCHHHHHHHHHHHHHHHhhcCCh--
Q 004394 353 --------YVKKLKLEMLTAVANESNTY-------------EIVTELCEYAAN--VDIPIARESIRAVGKIALQQYDV-- 407 (756)
Q Consensus 353 --------~IK~~kLdIL~~L~n~~Nv~-------------~Iv~EL~~Yl~~--~D~~~~~~~I~aIg~lA~k~~~~-- 407 (756)
.--...|+++-.|+.++|-. .++..|...+.. ....++.++++++|.+....+..
T Consensus 270 ~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~ 349 (651)
T 3grl_A 270 SGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQD 349 (651)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 12234788888898886631 145566666654 46789999999999877543321
Q ss_pred -------------hHHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCCCcc
Q 004394 408 -------------NAIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYPQWS 444 (756)
Q Consensus 408 -------------~~~vd~Ll~LL~~~~-~~v~~E~i~~i~~Il~~~p~~~ 444 (756)
...+..++.++.... -.+.-++..+++-.+.++++.+
T Consensus 350 ~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q 400 (651)
T 3grl_A 350 YFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQ 400 (651)
T ss_dssp HHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHH
Confidence 113333444433222 2344556667777776665443
No 90
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.22 E-value=0.18 Score=58.20 Aligned_cols=254 Identities=16% Similarity=0.101 Sum_probs=146.4
Q ss_pred hccCCChhhHHHHHHHHHHccccCChH-----HHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhh--------------
Q 004394 71 CSATSDIVLKKMCYLYVGNYAKVNPDL-----ALLTINFLQRDCKDEDPMIRGLALRSLCSLRVAN-------------- 131 (756)
Q Consensus 71 l~~s~d~~~KkL~YLyl~~~~~~~~el-----~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~e-------------- 131 (756)
+-.+.-++.||=.-+.+.-+++..++. +--.++++++|- .|..+...+|.+|.++-.++
T Consensus 30 l~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~--~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~ 107 (651)
T 3grl_A 30 VASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR--SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSE 107 (651)
T ss_dssp HHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT--TCHHHHHHHHHHHHHHHCCC--------------
T ss_pred HhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc--ccHHHHHHHHHHHHHHhCCCCcccccccccccch
Confidence 334555666777777777766666553 224466666664 23344444666665531110
Q ss_pred -----hHH------HHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc-----cCCCchHHHHHhHhcCCChhHHHHH
Q 004394 132 -----LVE------YLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC-----IDADFPPTLKHLMLNDPDPQVVANC 195 (756)
Q Consensus 132 -----i~e------~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~-----~~~~~i~~L~~lLL~D~d~~Vv~~A 195 (756)
+++ .-++.+..+|...+-|||-.|+.++-.+....|+.+ ..+.-++.|.++ |+|+.-.+...|
T Consensus 108 ~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l-L~d~rE~iRnea 186 (651)
T 3grl_A 108 DLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL-LADSREVIRNDG 186 (651)
T ss_dssp CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG-GGCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH-HhCchHHHHHHH
Confidence 122 236667888899999999999999999998877732 246778899997 688888888999
Q ss_pred HHHHHHHHhhcccchhHHHHHHHhhccH-HHHHHHHHHhccCCh----hHHHHHHHHHHhhCCCCh---hHHH--HHHHH
Q 004394 196 LSALQEIWSLEASTSEEASREREALISK-PVIYYLLNRIKEFSE----WAQCLVLELVAKYVPLDS---NEIF--DIMNL 265 (756)
Q Consensus 196 l~aL~eI~~~~~~~~~~~~~~~~~ll~~-~~~~~Ll~~l~~~~~----W~Qi~IL~lL~~y~p~d~---~e~~--~il~~ 265 (756)
+.+|.++.+.++.+- .++.. ..|.+|++.+.+-.. -..--.|.++..+...|+ .--. ..+..
T Consensus 187 llLL~~Lt~~n~~iQ--------klVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~ 258 (651)
T 3grl_A 187 VLLLQALTRSNGAIQ--------KIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQR 258 (651)
T ss_dssp HHHHHHHHTTCHHHH--------HHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGG
T ss_pred HHHHHHHhcCCHHHH--------HHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHH
Confidence 999999998765421 11111 245666665543221 112223333333333332 1111 12334
Q ss_pred HHHHhcc------------cchHHHHHHHHHHHhhcccc--chhHHHHHH--HHHHHHHHhhcCC--CcchHHHHHHHHH
Q 004394 266 LEDRLQH------------ANGAVVLSTIKVFLHLTLSM--TDVHQQVYE--RIKAPLLTLVSSG--SPEQSYAVLSHLH 327 (756)
Q Consensus 266 l~~~L~~------------~n~aVvleaik~ii~l~~~~--~~~~~~~l~--rl~~~L~~LLss~--~~nirYvaL~~l~ 327 (756)
+.++|.. .|---+++++++++.=.... ....+..+. .+..+|++++.+. ...++-.+|.++.
T Consensus 259 L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla 338 (651)
T 3grl_A 259 MKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVS 338 (651)
T ss_dssp GGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred HHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 4444432 22233667777666432210 111222222 2445677877543 5668888999999
Q ss_pred HHHhhCCc
Q 004394 328 ILVMRAPF 335 (756)
Q Consensus 328 ~L~~~~p~ 335 (756)
.++..+|.
T Consensus 339 ~~irgN~~ 346 (651)
T 3grl_A 339 EVIRGCQV 346 (651)
T ss_dssp HHHTTCHH
T ss_pred HHHhCCHH
Confidence 98877763
No 91
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=95.79 E-value=0.13 Score=52.33 Aligned_cols=167 Identities=10% Similarity=-0.014 Sum_probs=102.6
Q ss_pred HHHHHhhcCCCCh--HHHHHHHHHHHHHhhhcCC---cccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchh
Q 004394 137 VGPLGLGLKDNNS--YVRTVAVIGVLKLYHISAP---TCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSE 211 (756)
Q Consensus 137 ~~~v~~~L~d~~p--yVRKkAalal~kl~~~~p~---~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~ 211 (756)
++.+.+.|.++++ .|+..|+.++..+...+++ .+.+.+.++.|.++ |...++.|...|+.+|..|...++..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~l-L~s~~~~vq~~Aa~aL~nLa~~~~~n-- 86 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQL-LKVQNEDVQRAVCGALRNLVFEDNDN-- 86 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHG-GGCCCHHHHHHHHHHHHHHHTTCHHH--
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHhCCHHH--
Confidence 5667788888887 8888898888887765543 34456778999997 68889999999999999997643321
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcc-CChhHHHHHHHHHHhhCCCChhHHHHHHHH-HHHHhc------------------
Q 004394 212 EASREREALISKPVIYYLLNRIKE-FSEWAQCLVLELVAKYVPLDSNEIFDIMNL-LEDRLQ------------------ 271 (756)
Q Consensus 212 ~~~~~~~~ll~~~~~~~Ll~~l~~-~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~-l~~~L~------------------ 271 (756)
+........+..|++.|.. .++-.|-.....|..+.-.+ +-...|++- +.++.+
T Consensus 87 -----k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 87 -----KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITEALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp -----HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred -----HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhccHHHHHHHHhccccCCccccccccc
Confidence 1111112245566666654 45556666655555553322 112223322 212111
Q ss_pred -ccchHHHHHHHHHHHhhccccchhHHHHHH--HHHHHHHHhhc
Q 004394 272 -HANGAVVLSTIKVFLHLTLSMTDVHQQVYE--RIKAPLLTLVS 312 (756)
Q Consensus 272 -~~n~aVvleaik~ii~l~~~~~~~~~~~l~--rl~~~L~~LLs 312 (756)
+.+..|...|+.++..+....++.++.+.+ .++++|+.++.
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~ 204 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHH
Confidence 124578889999998887644444444332 35667777775
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.70 E-value=0.29 Score=50.47 Aligned_cols=125 Identities=16% Similarity=0.249 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHhcCCCccchhhhh----hhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHH
Q 004394 41 DDSKRELFKKVISYMTIGIDVSAVFGEM----VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMI 116 (756)
Q Consensus 41 ~~~kk~~lkKlI~~~~lG~Dvs~lF~~V----i~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~i 116 (756)
++.|.+.++++--+.+.+ |.+ +++++ +.+...++.++||.+==++......+
T Consensus 29 ~~~kl~~L~qa~el~~~~-dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k---------------------- 84 (257)
T 3gs3_A 29 PSTKCELLAKVQETVLGS-CAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVK---------------------- 84 (257)
T ss_dssp HHHHHHHHHHHHHHHTTT-TGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC----------------------
T ss_pred cHHHHHHHHHHHHHHHcc-CHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH----------------------
Confidence 368999999988877765 443 55554 45666788889998777665544332
Q ss_pred HHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCc-ccC--------CCc------hHHHHH
Q 004394 117 RGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPT-CID--------ADF------PPTLKH 181 (756)
Q Consensus 117 R~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~-~~~--------~~~------i~~L~~ 181 (756)
++++..+++.+..++.|.+|.|-|+|+.|...+|+.-=+. +.. .-| ...+.+
T Consensus 85 -------------~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~ 151 (257)
T 3gs3_A 85 -------------VELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILD 151 (257)
T ss_dssp -------------GGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHH
Confidence 4456666677777778888888888888888888632111 111 112 234555
Q ss_pred hHhcCCChhHHHHHHHHHHHHH
Q 004394 182 LMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 182 lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
+ .+..|.+|..+|+..+..+.
T Consensus 152 ~-~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 152 M-IDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp G-GGSSCHHHHHHHHHHHHHHH
T ss_pred H-HccCCcchHHHHHHHHHHHH
Confidence 4 46789999999999888865
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.41 E-value=1.5 Score=53.71 Aligned_cols=123 Identities=11% Similarity=0.066 Sum_probs=81.4
Q ss_pred HHHHHHHHHHccccCChHHHH----HHHHHH-HHcC---CCChHHHHHHHHHHhcCChh------------hhHHHHHHH
Q 004394 80 KKMCYLYVGNYAKVNPDLALL----TINFLQ-RDCK---DEDPMIRGLALRSLCSLRVA------------NLVEYLVGP 139 (756)
Q Consensus 80 KkL~YLyl~~~~~~~~el~lL----~iNtl~-KDL~---s~Np~iR~LALrtLs~I~~~------------ei~e~l~~~ 139 (756)
|+++ ...-.++...+++.+- .+..+. +-+. +.+-..+=.||.+|+.++.. +..+.+++.
T Consensus 416 k~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~l 494 (980)
T 3ibv_A 416 KKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQI 494 (980)
T ss_dssp HHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHH
T ss_pred HHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHH
Confidence 5566 6667777778888776 444433 3342 23445677888887775331 123345566
Q ss_pred HHhhcC-----CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhc-----CCChhHHHHHHHHHHHHHhhc
Q 004394 140 LGLGLK-----DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLN-----DPDPQVVANCLSALQEIWSLE 206 (756)
Q Consensus 140 v~~~L~-----d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~-----D~d~~Vv~~Al~aL~eI~~~~ 206 (756)
+.+++. +++|.||.+++..+.|....-.. .+++++.+...++. ++++.|...|..++..+++..
T Consensus 495 l~~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~---~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 495 LALVTTSQVCRHPHPLVQLLYMEILVRYASFFDY---ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGT---CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 666654 89999999999999998875432 24455544444344 688899999999999987643
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.39 E-value=7.5 Score=47.74 Aligned_cols=176 Identities=11% Similarity=0.117 Sum_probs=98.5
Q ss_pred HHHHHHhcCChhhhHHHHHHHHHhhcCC--CChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHH
Q 004394 119 LALRSLCSLRVANLVEYLVGPLGLGLKD--NNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCL 196 (756)
Q Consensus 119 LALrtLs~I~~~ei~e~l~~~v~~~L~d--~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al 196 (756)
-.|-.++++...++.+.+.+.+.+.+.+ .++..|=+|++|+..+-.- +. .+.... .+..++
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~-~~-------~~~e~~---------~l~~vi 497 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGT-MS-------EDTEKR---------FVVTVI 497 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTS-SC-------HHHHHH---------HHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcC-CC-------chhHHH---------HHHHHH
Confidence 5667777888889999999988888765 5788899999998876531 11 011111 122233
Q ss_pred HHHHHHHhhcccchhHHHHHHHhhccHHHHH-HHHHHhccCChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHHhcccch
Q 004394 197 SALQEIWSLEASTSEEASREREALISKPVIY-YLLNRIKEFSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDRLQHANG 275 (756)
Q Consensus 197 ~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~-~Ll~~l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~L~~~n~ 275 (756)
..|..+..+..+.. .+..++ ..+..++.+.+|... +++-...+++.+...+...++
T Consensus 498 ~~Ll~l~~~~~~~d-----------~k~~v~~t~~~~lGry~~wl~~------------~~~~L~~vl~~L~~~l~~~~~ 554 (1023)
T 4hat_C 498 KDLLDLCVKKRGKD-----------NKAVVASDIMYVVGQYPRFLKA------------HWNFLRTVILKLFEFMHETHE 554 (1023)
T ss_dssp HHHHHHHHHCCSHH-----------HHHHHHHHHHHHHHTCHHHHHH------------CHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHhhhccccCc-----------chHHHHHHHHHHHHHHHHHHhc------------cHHHHHHHHHHHHHHhhcCCH
Confidence 33334433211100 011122 344556667777632 344455566777777766777
Q ss_pred HHHHHHHHHHHhhccccc-hhH-------HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCC
Q 004394 276 AVVLSTIKVFLHLTLSMT-DVH-------QQVYERIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAP 334 (756)
Q Consensus 276 aVvleaik~ii~l~~~~~-~~~-------~~~l~rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p 334 (756)
.|.-.|+.+|.++...-. .+. ...+..+...+...+..-+++-+..+.+.+..+++..|
T Consensus 555 ~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 555 GVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 888888888776643110 010 00122233333334444456667778888888877655
No 95
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=95.32 E-value=0.76 Score=50.09 Aligned_cols=186 Identities=12% Similarity=0.115 Sum_probs=105.7
Q ss_pred HHHHHHHHHhcC---ChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHH
Q 004394 116 IRGLALRSLCSL---RVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVV 192 (756)
Q Consensus 116 iR~LALrtLs~I---~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv 192 (756)
.+...|+.+-.+ +.+++.+.+++.|.....|++..|||-.+-=+...+..+++.+ ...++.|..+ ++|.|+.|+
T Consensus 41 ~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~--~~~l~~L~~L-L~d~d~~V~ 117 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELL--LKLIANLNML-LRDENVNVV 117 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-HTCSSHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HcCCCHHHH
Confidence 455555555553 4567777788888888888888888888888888888777776 5566777775 578888887
Q ss_pred HHHHHHHHHHHh-------hcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC----CC--C----
Q 004394 193 ANCLSALQEIWS-------LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV----PL--D---- 255 (756)
Q Consensus 193 ~~Al~aL~eI~~-------~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~----p~--d---- 255 (756)
-.++.+...|.+ .++... +.+...|..+.. +-..+++.+...++=..+..++++.++. +. +
T Consensus 118 K~~I~~~tslYpl~f~~i~~~~~~~-~~~e~~W~~m~~-lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p 195 (386)
T 3o2t_A 118 KKAILTMTQLYKVALQWMVKSRVIS-ELQEACWDMVSA-MAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIP 195 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-CCC-HHHHHHHHHHHH-HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHH-HHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccc
Confidence 666554444421 122110 001122332221 2234444444455555666777666532 11 1
Q ss_pred ------------------------hhHHHHHHHHHHHHhccc--chHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Q 004394 256 ------------------------SNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLT 309 (756)
Q Consensus 256 ------------------------~~e~~~il~~l~~~L~~~--n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~ 309 (756)
+.|+..+++.+...+++. ++..+..+++++..+....+. ...++.+.|.+
T Consensus 196 ~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~----~~~rIl~aL~~ 271 (386)
T 3o2t_A 196 RRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPM----FMSEVIQAYET 271 (386)
T ss_dssp GGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGG----GHHHHHHHHHH
T ss_pred cccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHH----HHHHHHHHHHh
Confidence 135667888888888753 344555666665554433222 23445555544
Q ss_pred h
Q 004394 310 L 310 (756)
Q Consensus 310 L 310 (756)
+
T Consensus 272 l 272 (386)
T 3o2t_A 272 L 272 (386)
T ss_dssp H
T ss_pred h
Confidence 3
No 96
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=95.22 E-value=2.5 Score=43.50 Aligned_cols=173 Identities=14% Similarity=0.128 Sum_probs=114.5
Q ss_pred CChHHHHHHHHHHhc---CChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCC
Q 004394 112 EDPMIRGLALRSLCS---LRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPD 188 (756)
Q Consensus 112 ~Np~iR~LALrtLs~---I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d 188 (756)
.+ -.+...|+..-. -..+++.+.+++.+.....|++..|||-.+-=+...++.+++.+ ...++.|..+ ++|.|
T Consensus 28 ~~-~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~--~~~l~~L~~L-l~d~d 103 (257)
T 3gs3_A 28 SP-STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL--PHVINVVSML-LRDNS 103 (257)
T ss_dssp CH-HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHH-TTCSC
T ss_pred Cc-HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HcCCC
Confidence 44 366666665554 25688999999999999899999999999999999999999887 6678888886 79999
Q ss_pred hhHHHHHHHHHHHHHh-------hcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC----CC--C
Q 004394 189 PQVVANCLSALQEIWS-------LEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV----PL--D 255 (756)
Q Consensus 189 ~~Vv~~Al~aL~eI~~-------~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~----p~--d 255 (756)
+.|+-.++.+...+.+ .+++.. +.+...|..+.. +=.++++.+...++=..+..++++.+.. +. +
T Consensus 104 ~~V~K~~I~~~~~iY~~~l~~i~~~~~~~-~~~~~~W~~m~~-lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT~~~~~ 181 (257)
T 3gs3_A 104 AQVIKRVIQACGSIYKNGLQYLCSLMEPG-DSAEQAWNILSL-IKAQILDMIDNENDGIRTNAIKFLEGVVVLQSFADED 181 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCC-HHHHHHHHHHHH-HHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHH-HHHHHHHHHccCCcchHHHHHHHHHHHHHhhcCCCcc
Confidence 9998777766555532 222211 111223433321 2334555555566667778888777642 11 0
Q ss_pred -------------------------hhHHHHHHHHHHHHhccc--chHHHHHHHHHHHhhcc
Q 004394 256 -------------------------SNEIFDIMNLLEDRLQHA--NGAVVLSTIKVFLHLTL 290 (756)
Q Consensus 256 -------------------------~~e~~~il~~l~~~L~~~--n~aVvleaik~ii~l~~ 290 (756)
+.|+..+++.+...+.+. ++..+..+++++..+..
T Consensus 182 ~~~~~~d~SL~~Vp~~Hp~l~~~~Le~Ea~~lL~~LL~~~~~~~iss~~l~a~lnsL~~Iak 243 (257)
T 3gs3_A 182 SLKRDGDFSLADVPDHCTLFRREKLQEEGNNILDILLQFHGTTHISSVNLIACTSSLCTIAK 243 (257)
T ss_dssp SCCCTTCCCGGGSCSSCCSSCHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 145677888887776654 44456666666655543
No 97
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=94.93 E-value=0.64 Score=48.15 Aligned_cols=185 Identities=10% Similarity=0.011 Sum_probs=116.5
Q ss_pred CCCCCCcchHHHHHHHHHhh--------hcCCCCCChHHHHHHHHHHHHHHhcCCCc----cch-hhhhh-hhccCCChh
Q 004394 13 PSQPSGKGEVSDLKSQLRQL--------AGSRAPGIDDSKRELFKKVISYMTIGIDV----SAV-FGEMV-MCSATSDIV 78 (756)
Q Consensus 13 ~~~~~~k~ei~Elr~~L~~~--------~~~~~~~~~~~kk~~lkKlI~~~~lG~Dv----s~l-F~~Vi-~l~~s~d~~ 78 (756)
.+...+...+..|++++... ..+ .+-..+.+++..+.-......+- .++ |.-+. ++. .++..
T Consensus 27 ~f~~p~~e~v~~L~~~~~~~~~~~~~~~lfs---~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~-d~N~~ 102 (266)
T 2of3_A 27 NFQAPTDEHISQLQTLLGNQAKVSLMSQLFH---KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFF-ETNPA 102 (266)
T ss_dssp CCSSCCHHHHHHHHHHHHTTBCHHHHHHHTC---SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTT-SCCHH
T ss_pred CCCCCCHHHHHHHHHHHHHhccHHHHHHhcC---CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHh-CCCHH
Confidence 44555556666788887765 122 23355666666666554332211 111 22121 233 44544
Q ss_pred hHHHHHHHHHHc----ccc----CChHHHHHHHHHHHHcCCCChHHHHHHHH---HHhcCChhhhHHHHHHHHHhhcCCC
Q 004394 79 LKKMCYLYVGNY----AKV----NPDLALLTINFLQRDCKDEDPMIRGLALR---SLCSLRVANLVEYLVGPLGLGLKDN 147 (756)
Q Consensus 79 ~KkL~YLyl~~~----~~~----~~el~lL~iNtl~KDL~s~Np~iR~LALr---tLs~I~~~ei~e~l~~~v~~~L~d~ 147 (756)
.=.-|.-++..+ .+. .+..+-..+..+.--+.|+++-+|..+-. .|+.+..+ ..+.+.+..++.++
T Consensus 103 v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~---~~v~~~l~~g~ksK 179 (266)
T 2of3_A 103 ALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP---LKMTPMLLDALKSK 179 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHHHHGGGCS
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHccC
Confidence 433333333332 222 22224556688888899999999987654 44444333 34666778899999
Q ss_pred ChHHHHHHHHHHHHHhhhcCCcccCCCch---HHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 148 NSYVRTVAVIGVLKLYHISAPTCIDADFP---PTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 148 ~pyVRKkAalal~kl~~~~p~~~~~~~~i---~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
|+.+|--.+..+..++..+.-.- ...+ +.+..+ +.|+|..|.-+|+.++.++....+
T Consensus 180 N~R~R~e~l~~l~~li~~~G~~~--~~~l~~~~~ia~l-l~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 180 NARQRSECLLVIEYYITNAGISP--LKSLSVEKTVAPF-VGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHCSGG--GGGGCHHHHHGGG-GGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCc--cccccchHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988664332 3467 888887 799999999999999999977554
No 98
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.76 E-value=3.9 Score=45.65 Aligned_cols=333 Identities=10% Similarity=0.070 Sum_probs=162.9
Q ss_pred CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHH----HHHHHHHH
Q 004394 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQ----CLVLELVA 249 (756)
Q Consensus 174 ~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Q----i~IL~lL~ 249 (756)
.....+..+|-...+..++...+.++.++...+| ...... .. ..-++.....++......++|.. ..++.++.
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~-~~~~~~-~~-f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~ 153 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK-YGDDTV-KF-FQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV 153 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS-SSHHHH-HH-HHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCc-chHHHH-HH-HhhCcccchHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 3445566665557788889999999999988765 100000 00 01111223345544444566654 33333443
Q ss_pred hhCCCChhHHHHHHH--HHHHHhccc-chHHHHHHHHHHHhhccccchhHHHHHH---HHHHHHH----HhhcCC-----
Q 004394 250 KYVPLDSNEIFDIMN--LLEDRLQHA-NGAVVLSTIKVFLHLTLSMTDVHQQVYE---RIKAPLL----TLVSSG----- 314 (756)
Q Consensus 250 ~y~p~d~~e~~~il~--~l~~~L~~~-n~aVvleaik~ii~l~~~~~~~~~~~l~---rl~~~L~----~LLss~----- 314 (756)
...+.+.+....+++ .+...|++. +....+-|++++-.+-.. +..+..+.+ .+.+++. +.+.++
T Consensus 154 ~~~~~~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 154 QNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp STTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred ccCCccHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 334455555566666 555666653 333344555555433211 111111111 1222332 222211
Q ss_pred --------CcchHHHHHHHHHHHHhhCCc----ccccccc---ee--eecCCCCHHHHHHHHHHHHHhcCCC--CHHHHH
Q 004394 315 --------SPEQSYAVLSHLHILVMRAPF----IFASDYK---HF--YCQYNEPSYVKKLKLEMLTAVANES--NTYEIV 375 (756)
Q Consensus 315 --------~~nirYvaL~~l~~L~~~~p~----lf~~~~~---~f--~c~~~dp~~IK~~kLdIL~~L~n~~--Nv~~Iv 375 (756)
...++|-++-.+=.+. -.|. +...++. .+ .++...-.-|=|..+.+|..+.+.. +-...+
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLS-F~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~ 311 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLT-FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI 311 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHT-TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred ccccCCCccHHHHHHHHHHHHHHH-cCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence 1334677776665443 2222 1111111 00 1222333455566677777777665 222222
Q ss_pred HH------HHHHhh------hCCHHHHHHHHHHHHHHHhhcC---ChhHHHHH-HHHHhhhcCchhhHHHHHHHHHHHhh
Q 004394 376 TE------LCEYAA------NVDIPIARESIRAVGKIALQQY---DVNAIVDR-LLQFLEMEKDYVTAEALVLVKDLLRK 439 (756)
Q Consensus 376 ~E------L~~Yl~------~~D~~~~~~~I~aIg~lA~k~~---~~~~~vd~-Ll~LL~~~~~~v~~E~i~~i~~Il~~ 439 (756)
.+ +...+. -.|+|+..++-.--..+.+.+. +.+.|..- .-..|+=+.-|-.+.-|. .=.++
T Consensus 312 ~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~---ENa~k 388 (480)
T 1ho8_A 312 KQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWS---DNIDE 388 (480)
T ss_dssp HHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHH---HHSGG
T ss_pred HHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHH---HHHHH
Confidence 22 122221 2577776655444444444432 22333222 122222222344444442 11123
Q ss_pred CCCcchHHHHHHHHhhhcc--------CCchhHHHHHHhHhccCCCCCCChHHHHHHH------hhhhccCChHHHHHHH
Q 004394 440 YPQWSHDCIAVVGSISSQN--------VQEPKAKAALIWMLGEYSQDMQDAPYILESL------TENWEEEPSAEVRLHL 505 (756)
Q Consensus 440 ~p~~~~~~~~~l~~l~~~~--------i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l------~~~f~~e~~~~Vq~~l 505 (756)
..+-.-..+..|.+++... -.+|...+.++.=||||..+.++...+++.+ .+-...++ ++||.+.
T Consensus 389 f~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d-~~Vr~~A 467 (480)
T 1ho8_A 389 FKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSD-SRVKYEA 467 (480)
T ss_dssp GSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSS-HHHHHHH
T ss_pred HHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCC-HHHHHHH
Confidence 3232223445566665321 2478889999999999999999888777653 23334456 9999999
Q ss_pred HHHhhHhhhc
Q 004394 506 LTAVMKCFFK 515 (756)
Q Consensus 506 LtA~~Kl~~~ 515 (756)
|.|+-|+...
T Consensus 468 L~avQklm~~ 477 (480)
T 1ho8_A 468 LKATQAIIGY 477 (480)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988643
No 99
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=94.48 E-value=0.83 Score=49.78 Aligned_cols=207 Identities=18% Similarity=0.209 Sum_probs=127.6
Q ss_pred cchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCc---cchhhhhhhhccCCChhhHHHHHHHHHHccccCC
Q 004394 19 KGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDV---SAVFGEMVMCSATSDIVLKKMCYLYVGNYAKVNP 95 (756)
Q Consensus 19 k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dv---s~lF~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~ 95 (756)
+..+.|+-++-+.. .+ +.|.+.++++=-+... .|- ..+|.+++.+...++.++||.|==++...+..
T Consensus 24 ~~~v~~lln~A~~~------~~-~~Kl~~L~q~~EL~l~-~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-- 93 (386)
T 3o2t_A 24 SERVVDLLNQAALI------TN-DSKITVLKQVQELIIN-KDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-- 93 (386)
T ss_dssp HHHHHHHHHHHHHC------CS-THHHHHHHHHHHHHHT-TCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhhcc------Ch-HHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--
Confidence 45566666555541 22 4789998887665543 343 34577778888888999999987777544322
Q ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-------cCC
Q 004394 96 DLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-------SAP 168 (756)
Q Consensus 96 el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-------~p~ 168 (756)
..+++..+++.+..+|.|.++.|-|+|+.|...+|+. +|.
T Consensus 94 ---------------------------------~~el~~~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~ 140 (386)
T 3o2t_A 94 ---------------------------------DIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRV 140 (386)
T ss_dssp ---------------------------------CGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3555666677777778888888888888888888752 222
Q ss_pred cc--cCCCc------hHHHHHhHhcCCChhHHHHHHHHHHHHHh--h----cc--------cchhHHHHHHHhhccH---
Q 004394 169 TC--IDADF------PPTLKHLMLNDPDPQVVANCLSALQEIWS--L----EA--------STSEEASREREALISK--- 223 (756)
Q Consensus 169 ~~--~~~~~------i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~--~----~~--------~~~~~~~~~~~~ll~~--- 223 (756)
.- .+.-| .+.+..+ ....|.+|..+|+..+..+.- . ++ ..+...+|...-++.+
T Consensus 141 ~~~~~e~~W~~m~~lK~~Il~~-~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~L 219 (386)
T 3o2t_A 141 ISELQEACWDMVSAMAGDIILL-LDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVL 219 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHG-GGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHH-hccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHH
Confidence 10 00112 3445555 567899999999999888652 1 10 1111112211112222
Q ss_pred -----HHHHHHHHHhcc--CChhHHHHHHHHHHhhCCCChhHHHHHHHHHHHH
Q 004394 224 -----PVIYYLLNRIKE--FSEWAQCLVLELVAKYVPLDSNEIFDIMNLLEDR 269 (756)
Q Consensus 224 -----~~~~~Ll~~l~~--~~~W~Qi~IL~lL~~y~p~d~~e~~~il~~l~~~ 269 (756)
..+..|++.+.. .+++.-+.+|..|......-+.-...+++.+..+
T Consensus 220 e~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l 272 (386)
T 3o2t_A 220 WEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETL 272 (386)
T ss_dssp HHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhh
Confidence 244556665554 4677777888888887777777777777777643
No 100
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=93.67 E-value=11 Score=42.04 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=50.6
Q ss_pred HHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 139 PLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 139 ~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
.|..+.+ .++-+++-|+-=+.|.|+..|+.- +..++.+.++ ..|.|..|...|+..|-.+++
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~--~~Ai~a~lDL-cEDed~~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELA--DSAINAQLDL-CEDEDVSIRRQAIKELPQFAT 94 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGH--HHHHHHHHHH-HTCSSHHHHHHHHHHGGGGCC
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhH--HHHHHHHHHH-HhcccHHHHHHHHHhhHHHhh
Confidence 3444443 468999999999999999999987 6678888897 799999999999887766654
No 101
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=93.13 E-value=2 Score=43.48 Aligned_cols=137 Identities=12% Similarity=-0.034 Sum_probs=93.8
Q ss_pred HHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHh-hcCCCChHHHHHHHHHHHHHhh-hcCCcccCCCchHHHHHh
Q 004394 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGL-GLKDNNSYVRTVAVIGVLKLYH-ISAPTCIDADFPPTLKHL 182 (756)
Q Consensus 105 l~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~-~L~d~~pyVRKkAalal~kl~~-~~p~~~~~~~~i~~L~~l 182 (756)
++.=.+|+...+|++|...++.. . . .+.+.+.++. .-.|++..||-.++.++.+++. .+|+. ..+.+...
T Consensus 76 a~~L~~~~~deVR~~Av~lLg~~-~-~-~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-----~l~~~~~W 147 (240)
T 3l9t_A 76 AFLAYQSDVYQVRMYAVFLFGYL-S-K-DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-----ALPIIDEW 147 (240)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHT-T-T-SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----THHHHHHH
T ss_pred HHHHHhCcchHHHHHHHHHHHhc-c-C-cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----HHHHHHHH
Confidence 33334566679999999999988 3 3 3678888887 7789999999999999999996 88874 35677776
Q ss_pred HhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHH-hccCChhHHHHHHHHHHhhCCCChhHHHH
Q 004394 183 MLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNR-IKEFSEWAQCLVLELVAKYVPLDSNEIFD 261 (756)
Q Consensus 183 LL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~-l~~~~~W~Qi~IL~lL~~y~p~d~~e~~~ 261 (756)
..|+|+-|...|+-.+.--+. .+. + ..++..+..++.. ..+.+.+.|-.|=.-|..|...+|+-..+
T Consensus 148 -~~d~n~~VRR~Ase~~rpW~~-~~~--~--------k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~ 215 (240)
T 3l9t_A 148 -LKSSNLHTRRAATEGLRIWTN-RPY--F--------KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKI 215 (240)
T ss_dssp -HHCSSHHHHHHHHHHTCSGGG-STT--T--------TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -hcCCCHHHHHHHHHhhHHHhc-cch--h--------hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHH
Confidence 689999999888654422111 111 0 1122223344443 45677788888888888887777765443
No 102
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.41 E-value=0.85 Score=56.31 Aligned_cols=121 Identities=13% Similarity=0.092 Sum_probs=84.0
Q ss_pred hhhHHHHHHHHHHccc--------cCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhh--c-C
Q 004394 77 IVLKKMCYLYVGNYAK--------VNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLG--L-K 145 (756)
Q Consensus 77 ~~~KkL~YLyl~~~~~--------~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~--L-~ 145 (756)
-.+++.++|.+..+.+ ..++..--..+.+.+-+...+..-+-++|++|||++.++.++.+.+.+... - .
T Consensus 409 ~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~ 488 (1056)
T 1lsh_A 409 PILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLD 488 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCC
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCChhHHHHHHHhhcCcccccc
Confidence 3456667777654432 133555566777777777888899999999999999998877655443221 1 1
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh-cCCChhHHHHHHHHHHHH
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML-NDPDPQVVANCLSALQEI 202 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL-~D~d~~Vv~~Al~aL~eI 202 (756)
+....||..|+.|+-++-...|+.+ .+.+..+.. ...++.|+.+|+.+|.+.
T Consensus 489 ~~~~rvr~aAi~ALr~~~~~~p~~v-----~~il~~i~~n~~e~~EvRiaA~~~Lm~t 541 (1056)
T 1lsh_A 489 EYSTRVQAEAIMALRNIAKRDPRKV-----QEIVLPIFLNVAIKSELRIRSCIVFFES 541 (1056)
T ss_dssp CSCHHHHHHHHHTTTTGGGTCHHHH-----HHHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHhhhhchHHH-----HHHHHHHhcCCCCChHHHHHHHHHHHHH
Confidence 2245799999999988887777654 445555522 467899999998888763
No 103
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.27 E-value=29 Score=43.25 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhccCChHHHHHHHHH---HhhHhhhcCChhhHHHHHHHHHhhhcC-----------CChHHHhHHHHHHH
Q 004394 483 PYILESLTENWEEEPSAEVRLHLLT---AVMKCFFKRPPETQKVLGAALAAGLAD-----------FHQDVHDRALFYHR 548 (756)
Q Consensus 483 ~~iL~~l~~~f~~e~~~~Vq~~lLt---A~~Kl~~~~p~e~~~~l~~vL~~~~~d-----------~d~dVrdRA~~Y~r 548 (756)
+.++..+.. +..++ +.++...++ ++...+.++|+-...++.++|...... .+-+||.+|+.-.+
T Consensus 532 ~~Ll~~ll~-~~~~~-p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~ 609 (1204)
T 3a6p_A 532 IELLQMVLN-FDTKD-PLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSII 609 (1204)
T ss_dssp HHHHHHHHH-CCCSC-HHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCC-hHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHH
Confidence 445554443 12245 667766666 455555666766777888888765431 23489999886554
Q ss_pred Hh
Q 004394 549 LL 550 (756)
Q Consensus 549 LL 550 (756)
-|
T Consensus 610 ~L 611 (1204)
T 3a6p_A 610 KM 611 (1204)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 104
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=91.88 E-value=6.6 Score=48.44 Aligned_cols=147 Identities=11% Similarity=-0.002 Sum_probs=81.7
Q ss_pred HHHHHHHHHcCCCC--hHHH---HHHHHHH-hcCCh---hhhHHHHHHHHHhhcCCC-----ChHHHHHHHHHHHHHhh-
Q 004394 100 LTINFLQRDCKDED--PMIR---GLALRSL-CSLRV---ANLVEYLVGPLGLGLKDN-----NSYVRTVAVIGVLKLYH- 164 (756)
Q Consensus 100 L~iNtl~KDL~s~N--p~iR---~LALrtL-s~I~~---~ei~e~l~~~v~~~L~d~-----~pyVRKkAalal~kl~~- 164 (756)
.....+++-+.+++ -..+ +.|+++| |++.. ..++..+++.+..+..++ .+-||......+.+.-+
T Consensus 477 i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~w 556 (1073)
T 3gjx_A 477 IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRF 556 (1073)
T ss_dssp HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHH
Confidence 34455665555433 2222 6777777 44442 246677777777776555 34555555556655333
Q ss_pred --hcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHH----HhccCCh
Q 004394 165 --ISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLN----RIKEFSE 238 (756)
Q Consensus 165 --~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~----~l~~~~~ 238 (756)
.+|+.+ +..+..|-+. ..|.+++|..+|+.++..|+.......-..-+. -..+.+..+++ ......+
T Consensus 557 l~~h~~~L--~~vl~~L~~~-m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~----e~~p~i~~il~~~~~~~~~l~~ 629 (1073)
T 3gjx_A 557 LRAHWKFL--KTVVNKLFEF-MHETHDGVQDMACDTFIKIAQKCRRHFVQVQVG----EVMPFIDEILNNINTIICDLQP 629 (1073)
T ss_dssp HHHCHHHH--HHHHHHHHHH-TTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTT----CSSCHHHHHHTSHHHHHTTCCH
T ss_pred HHhCHHHH--HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchHHHHHHHHHHHHHHhcCH
Confidence 355544 3334555555 379999999999999999987543210000000 00112333333 3444566
Q ss_pred hHHHHHHHHHHhhCC
Q 004394 239 WAQCLVLELVAKYVP 253 (756)
Q Consensus 239 W~Qi~IL~lL~~y~p 253 (756)
=.+..+.+.++....
T Consensus 630 ~~~~~lyeav~~vi~ 644 (1073)
T 3gjx_A 630 QQVHTFYEAVGYMIG 644 (1073)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777776643
No 105
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=91.47 E-value=0.89 Score=46.12 Aligned_cols=191 Identities=13% Similarity=0.072 Sum_probs=100.6
Q ss_pred CCCCCCCCCCcchHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHhcCCCccchhhhhhhhccCCChhhHHHHHHHHH
Q 004394 9 RSPSPSQPSGKGEVSDLKSQLRQLAGSRAPGIDDSKRELFKKVISYMTIGIDVSAVFGEMVMCSATSDIVLKKMCYLYVG 88 (756)
Q Consensus 9 ~~~~~~~~~~k~ei~Elr~~L~~~~~~~~~~~~~~kk~~lkKlI~~~~lG~Dvs~lF~~Vi~l~~s~d~~~KkL~YLyl~ 88 (756)
-+|.-.|.-.+|-..|.-..|.+-... ...--|+..+...... ..++....+.-.-.+.+++..+.|-++--.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~gf~~~~~~a~~~~-~~~~~~~~~~la~~L~~~~~deVR~~Av~lLg 96 (240)
T 3l9t_A 22 ASMTGGQQMGRGSMKQYVARLEKDFSL----IEHGFKEEEQRALTDY-KSNDGEYIKKLAFLAYQSDVYQVRMYAVFLFG 96 (240)
T ss_dssp ------------CHHHHHHHHHHHHTC---------CHHHHHHHHHH-HHSCHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred hhccchhhhhhhHHHHHHHHHHHHHHH----hhcccHHHHHHHHHHH-HhCCHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 455555666666666655554332111 0011111111111111 12445544554556777777777655444333
Q ss_pred HccccCChHHHHHHHHHHH-HcCCCChHHHHHHHHHHhcCCh---hhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhh
Q 004394 89 NYAKVNPDLALLTINFLQR-DCKDEDPMIRGLALRSLCSLRV---ANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYH 164 (756)
Q Consensus 89 ~~~~~~~el~lL~iNtl~K-DL~s~Np~iR~LALrtLs~I~~---~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~ 164 (756)
.. ...++ +...++. =..|+|=-||=.+-..++.+.. ++ .+.+.+.+-+.|+++.|||.|+.++..-..
T Consensus 97 ~~-~~~~~----~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~ 168 (240)
T 3l9t_A 97 YL-SKDKE----ILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---KALPIIDEWLKSSNLHTRRAATEGLRIWTN 168 (240)
T ss_dssp HT-TTSHH----HHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---TTHHHHHHHHHCSSHHHHHHHHHHTCSGGG
T ss_pred hc-cCcHH----HHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---HHHHHHHHHhcCCCHHHHHHHHHhhHHHhc
Confidence 33 32222 2334443 2457777777555555554432 33 244567788899999999999999744111
Q ss_pred hcCCcccCC-CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHH
Q 004394 165 ISAPTCIDA-DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEAS 214 (756)
Q Consensus 165 ~~p~~~~~~-~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~ 214 (756)
. |....++ ...+.|..+ ..|++.-|.-+.-..|.++.+.+|.-....+
T Consensus 169 ~-~~~k~dp~~ll~iL~~L-~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~ 217 (240)
T 3l9t_A 169 R-PYFKENPNEAIRRIADL-KEDVSEYVRKSVGNALRDISKKFPDLVKIEL 217 (240)
T ss_dssp S-TTTTTCHHHHHHHHHTT-TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c-chhhcCHHHHHHHHHHh-cCChHHHHHHHHHHHHHHHhhhCHHHHHHHH
Confidence 1 2222222 236777776 7999999999999999999999997655544
No 106
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=90.60 E-value=3.2 Score=41.97 Aligned_cols=109 Identities=14% Similarity=0.049 Sum_probs=74.3
Q ss_pred chHHHHHhHhcCCCh--hHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhC
Q 004394 175 FPPTLKHLMLNDPDP--QVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYV 252 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~--~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~ 252 (756)
-++.+.++ |..+|+ .|..+|...+..++..++.. +........+..|+..|...++-.|......|..+.
T Consensus 9 ~i~~lV~l-L~s~~~~~~~q~~Aa~~l~~L~~~~~~~-------r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 9 TLERAVSM-LEADHMLPSRISAAATFIQHECFQKSEA-------RKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp CHHHHHHT-CCSSCCCHHHHHHHHHHHHHHHHHCHHH-------HHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-hCCCCchHHHHHHHHHHHHHHHcCCcHH-------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 36677776 677777 88888888888887654321 111222235677888888889999999999999887
Q ss_pred CCChhHHHH-----HHHHHHHHhcc-cchHHHHHHHHHHHhhccc
Q 004394 253 PLDSNEIFD-----IMNLLEDRLQH-ANGAVVLSTIKVFLHLTLS 291 (756)
Q Consensus 253 p~d~~e~~~-----il~~l~~~L~~-~n~aVvleaik~ii~l~~~ 291 (756)
-.+++.... -+..+..+|++ .+..+.-.|+.++..+...
T Consensus 81 ~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 81 FEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 655443333 35667777764 4667777787788777643
No 107
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=90.54 E-value=3.5 Score=42.58 Aligned_cols=134 Identities=16% Similarity=0.103 Sum_probs=94.2
Q ss_pred hhhhhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHH----HcCCCChHHHHHHHHHHhcCC----------hhh
Q 004394 66 GEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQR----DCKDEDPMIRGLALRSLCSLR----------VAN 131 (756)
Q Consensus 66 ~~Vi~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~K----DL~s~Np~iR~LALrtLs~I~----------~~e 131 (756)
.++...+-++|+...-=|.=.+......+++.++-.+--+.| -+.|+|+.+-..+|..+..+- .+.
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 455666667788766667777777777777765444333444 234789998888888887751 122
Q ss_pred hHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHh
Q 004394 132 LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWS 204 (756)
Q Consensus 132 i~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~ 204 (756)
-+..++|.+..-+.|+..-||..+--.+..++..+|-. .+.+.+.+. +...|.-+...++..+..+..
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g-~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDA-LKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHH-HccCCHHHHHHHHHHHHHHHH
Confidence 34667888888889999999998888887777776643 246666666 488898888888777766654
No 108
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=89.53 E-value=8 Score=47.10 Aligned_cols=218 Identities=14% Similarity=0.140 Sum_probs=149.7
Q ss_pred HHHHHHHHcCCCChHHHHHH---HHHHhcCChhhhHHHHHHHHHhhcCCC-ChHHHHHHHHHHHHHhhhcCCccc--CCC
Q 004394 101 TINFLQRDCKDEDPMIRGLA---LRSLCSLRVANLVEYLVGPLGLGLKDN-NSYVRTVAVIGVLKLYHISAPTCI--DAD 174 (756)
Q Consensus 101 ~iNtl~KDL~s~Np~iR~LA---LrtLs~I~~~ei~e~l~~~v~~~L~d~-~pyVRKkAalal~kl~~~~p~~~~--~~~ 174 (756)
..+.+..-+.|.+..+|..| +.++.....++-+..+.|.+...|.+. .+-.+-.|.-++-++-...|+.+. -++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~ 175 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPE 175 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 36888888899999999765 455555567777789999999999665 578888888888888887787652 256
Q ss_pred chHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHh--hC
Q 004394 175 FPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAK--YV 252 (756)
Q Consensus 175 ~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~--y~ 252 (756)
+++.+.+.| .|.-+.|..+|..++..++..-... + + .+.+..|++.+.++++ .-..++.|.. |.
T Consensus 176 ~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~------d----~-~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv 241 (986)
T 2iw3_A 176 LIPVLSETM-WDTKKEVKAAATAAMTKATETVDNK------D----I-ERFIPSLIQCIADPTE--VPETVHLLGATTFV 241 (986)
T ss_dssp HHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCT------T----T-GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCC
T ss_pred hhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCc------c----h-hhhHHHHHHHhcChhh--hHHHHHHhhcCeeE
Confidence 788888885 8999999999999999987632221 1 1 1357788888888877 4444666653 22
Q ss_pred CC-ChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHHH
Q 004394 253 PL-DSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLS--MTDVHQQVYERIKAPLLTLVS-SGSPEQSYAVLSHLHI 328 (756)
Q Consensus 253 p~-d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~--~~~~~~~~l~rl~~~L~~LLs-s~~~nirYvaL~~l~~ 328 (756)
.+ +.-...-+...|..-|.....++-..++-++-++..- ++......+.++.+-|.+... -++||.|-++-+++..
T Consensus 242 ~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~ 321 (986)
T 2iw3_A 242 AEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKT 321 (986)
T ss_dssp SCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHH
T ss_pred eeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHH
Confidence 22 2222333445566667777788887777666665532 222222334455555555443 4799999999999988
Q ss_pred HHhh
Q 004394 329 LVMR 332 (756)
Q Consensus 329 L~~~ 332 (756)
|...
T Consensus 322 l~~~ 325 (986)
T 2iw3_A 322 LRRV 325 (986)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 109
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=89.23 E-value=23 Score=43.54 Aligned_cols=138 Identities=12% Similarity=0.139 Sum_probs=87.3
Q ss_pred cCCCCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhc----C---chhhHHHHHHHHHHHh
Q 004394 366 ANESNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEME----K---DYVTAEALVLVKDLLR 438 (756)
Q Consensus 366 ~n~~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~----~---~~v~~E~i~~i~~Il~ 438 (756)
|.++-+..+.+.|.+.+...|.+-+.-.+++||.++.- . .++.+.+++... . ..|..+++..++.+-.
T Consensus 433 c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--~---~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~ 507 (1056)
T 1lsh_A 433 CPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--N---SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK 507 (1056)
T ss_dssp CCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--G---GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG
T ss_pred CCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--h---HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh
Confidence 33334566777777777777877778899999998753 2 456777777531 1 1244556666666665
Q ss_pred hCCCcchHHHHHHHHhhhccCCchhHHHHHHhHhccCCCCCCChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhc
Q 004394 439 KYPQWSHDCIAVVGSISSQNVQEPKAKAALIWMLGEYSQDMQDAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFK 515 (756)
Q Consensus 439 ~~p~~~~~~~~~l~~l~~~~i~~p~ak~a~iWiLGEy~~~i~~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~ 515 (756)
++|.. +-.++-.+..+.-.++++|.++++++=+-. -...++..+......|++.+|...+.+.+--+.-.
T Consensus 508 ~~p~~---v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~----P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s 577 (1056)
T 1lsh_A 508 RDPRK---VQEIVLPIFLNVAIKSELRIRSCIVFFESK----PSVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS 577 (1056)
T ss_dssp TCHHH---HHHHHHHHHHCTTSCHHHHHHHHHHHHHTC----CCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred hchHH---HHHHHHHHhcCCCCChHHHHHHHHHHHHHC----cCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence 55542 222344444455677889988888873321 13557777777777776688887777766555433
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=88.80 E-value=8.5 Score=46.88 Aligned_cols=254 Identities=15% Similarity=0.156 Sum_probs=152.5
Q ss_pred HHHHHHHHcCCC-ChHHHHHHHHHHhcCC-----hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhh-cCCcccCC
Q 004394 101 TINFLQRDCKDE-DPMIRGLALRSLCSLR-----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHI-SAPTCIDA 173 (756)
Q Consensus 101 ~iNtl~KDL~s~-Np~iR~LALrtLs~I~-----~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~-~p~~~~~~ 173 (756)
++..+.|-+.+. ++.--++++..||.-. .+-.+=.+.+.+..++.|+.+-||+.|..|+.-++.. .|+.+ .
T Consensus 55 ~~~~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~--~ 132 (986)
T 2iw3_A 55 FFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI--K 132 (986)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH--H
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH--H
Confidence 345555555554 2322234555555321 1112223468888999999999999999999999975 55565 5
Q ss_pred CchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHHHhhccHHHHHHHHHHhccCChhHHHHHHHHHHhhCC
Q 004394 174 DFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASREREALISKPVIYYLLNRIKEFSEWAQCLVLELVAKYVP 253 (756)
Q Consensus 174 ~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~~y~p 253 (756)
.+++.|.+.|.....-.....|+.++..+....|.. . ..--+.++.-+...+.+.-+=....-.+.+..++.
T Consensus 133 ~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~----~----~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQ----V----ALRMPELIPVLSETMWDTKKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHH----H----HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHH----H----HHhccchhcchHhhcccCcHHHHHHHHHHHHHHHh
Confidence 567777776533345788999999999998654421 0 00112344555555666666666666677766653
Q ss_pred -CChhHHHHHHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHhhcCCCcchH---HHHHHHHHHH
Q 004394 254 -LDSNEIFDIMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQS---YAVLSHLHIL 329 (756)
Q Consensus 254 -~d~~e~~~il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nir---YvaL~~l~~L 329 (756)
-+..+...++..+...+.+... |-+|++.+..-+- -.++....+.-+.+.|.+=|+.++..++ -++.++|.+|
T Consensus 205 ~~~n~d~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tf-v~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~l 281 (986)
T 2iw3_A 205 TVDNKDIERFIPSLIQCIADPTE--VPETVHLLGATTF-VAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKL 281 (986)
T ss_dssp GCCCTTTGGGHHHHHHHHHCTTH--HHHHHHHHTTCCC-CSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTT
T ss_pred cCCCcchhhhHHHHHHHhcChhh--hHHHHHHhhcCee-EeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhh
Confidence 2445566678888888876644 7888887765431 1222233445566667777776666654 4566677776
Q ss_pred HhhCCccccc-------ccceeeecCCCC--HHHHHHHHHHHHHhcCC
Q 004394 330 VMRAPFIFAS-------DYKHFYCQYNEP--SYVKKLKLEMLTAVANE 368 (756)
Q Consensus 330 ~~~~p~lf~~-------~~~~f~c~~~dp--~~IK~~kLdIL~~L~n~ 368 (756)
+. +|....+ .++..+-.-.|| ..+-.++++.|.+..+.
T Consensus 282 v~-~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 282 VE-DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp CC-CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred cC-CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 53 3322111 111112223566 46778889999887544
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=85.21 E-value=4.9 Score=47.00 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=15.5
Q ss_pred chHHHHHHHHHHHhhccccch
Q 004394 274 NGAVVLSTIKVFLHLTLSMTD 294 (756)
Q Consensus 274 n~aVvleaik~ii~l~~~~~~ 294 (756)
+..|..+|..++..+.....+
T Consensus 198 ~~~v~~~a~~~L~~ls~dn~~ 218 (684)
T 4gmo_A 198 PQDIYEEAISCLTTLSEDNLK 218 (684)
T ss_dssp CHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHHhccCHH
Confidence 457888899998888765443
No 112
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=84.95 E-value=4.6 Score=47.20 Aligned_cols=84 Identities=11% Similarity=0.042 Sum_probs=44.8
Q ss_pred HHHHHHhHhccCCCCCCChHHHHHH----Hhhhh--ccCChHHHHHHHHHHhhHhhhcC--C------------hhhHHH
Q 004394 464 AKAALIWMLGEYSQDMQDAPYILES----LTENW--EEEPSAEVRLHLLTAVMKCFFKR--P------------PETQKV 523 (756)
Q Consensus 464 ak~a~iWiLGEy~~~i~~~~~iL~~----l~~~f--~~e~~~~Vq~~lLtA~~Kl~~~~--p------------~e~~~~ 523 (756)
.+.-++=++|-.+....+ .++.+. +++-. ..++++.+-.+.|.+++=+|.-. | ...+..
T Consensus 555 lrv~~ig~Lg~LA~~~~~-~~~n~~Ig~fLl~~l~~~~~~~~~v~~EalnaifDIyaD~~~~yD~~Vf~~~~~l~~L~~~ 633 (684)
T 4gmo_A 555 LGVKCIGVVGSLAHDPAP-IEVNREVGVFLVTLLRQSNNVPPAEIVEALNQLFDIYGDEELACDKEVFWKDGFLKHLEEF 633 (684)
T ss_dssp HHHHHHHHHHHHTSTTSC-HHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHSCCTTSHHHHHTTTTTTHHHHHHHH
T ss_pred hhhhHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCccccHHHHHhccHHHHHHHH
Confidence 566678888887765443 222221 22211 11233778888888888888642 1 012222
Q ss_pred HHHHHHhhhc-C--CChHHHhHHHHHHH
Q 004394 524 LGAALAAGLA-D--FHQDVHDRALFYHR 548 (756)
Q Consensus 524 l~~vL~~~~~-d--~d~dVrdRA~~Y~r 548 (756)
+..+=+.... | .++|+|.|+-+-+.
T Consensus 634 vp~~k~~~K~idK~k~~elr~r~~e~~~ 661 (684)
T 4gmo_A 634 LPKMRTLTKGIDKRTQPELRTRADEALL 661 (684)
T ss_dssp HHHHHHHHHTSCTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 2222222322 3 47999999876553
No 113
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=80.10 E-value=1.3 Score=45.11 Aligned_cols=68 Identities=24% Similarity=0.369 Sum_probs=48.2
Q ss_pred HHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHh
Q 004394 105 LQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLML 184 (756)
Q Consensus 105 l~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL 184 (756)
+.+=++|+++.||..|.+.++ + +.+..+++|+++.||+.|+.. ..+ +.+..+ +
T Consensus 127 L~~L~~D~d~~VR~~aA~~l~----~-------~~l~~l~~D~d~~VR~~aa~~------l~~---------~ll~~l-l 179 (244)
T 1lrv_A 127 LEQMAADRDYLVRAYVVQRIP----P-------GRLFRFMRDEDRQVRKLVAKR------LPE---------ESLGLM-T 179 (244)
T ss_dssp GGGGTTCSSHHHHHHHHHHSC----G-------GGGGGTTTCSCHHHHHHHHHH------SCG---------GGGGGS-T
T ss_pred HHHHHcCCCHHHHHHHHHhcC----H-------HHHHHHHcCCCHHHHHHHHHc------CCH---------HHHHHH-H
Confidence 344468899999998888532 1 245678899999999999886 111 223344 6
Q ss_pred cCCChhHHHHHHHHH
Q 004394 185 NDPDPQVVANCLSAL 199 (756)
Q Consensus 185 ~D~d~~Vv~~Al~aL 199 (756)
+|+|+.|..+++..+
T Consensus 180 ~D~d~~VR~aaa~~l 194 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL 194 (244)
T ss_dssp TCSSHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHhC
Confidence 899999888888766
No 114
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=79.54 E-value=8.6 Score=43.81 Aligned_cols=227 Identities=14% Similarity=0.055 Sum_probs=132.7
Q ss_pred hhccCCChhhHHHHHHHHHHcccc-----------CChHHH--HHHHHHHH--HcCCCC--hHHHHHHHHHHhcCC--hh
Q 004394 70 MCSATSDIVLKKMCYLYVGNYAKV-----------NPDLAL--LTINFLQR--DCKDED--PMIRGLALRSLCSLR--VA 130 (756)
Q Consensus 70 ~l~~s~d~~~KkL~YLyl~~~~~~-----------~~el~l--L~iNtl~K--DL~s~N--p~iR~LALrtLs~I~--~~ 130 (756)
.-+-+++-+.|.=+-+++....+. |.|+++ +++=.+-| |.-+.. .-||--|-.+||.+. .+
T Consensus 181 ~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL~hLp~ 260 (800)
T 3oc3_A 181 DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRIYPLIG 260 (800)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHHTTTSC
T ss_pred HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHHHhCCh
Confidence 344567778888777877765533 336655 56666655 444432 346655555555541 12
Q ss_pred hhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccC-CCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccc
Q 004394 131 NLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCID-ADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAST 209 (756)
Q Consensus 131 ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~-~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~ 209 (756)
+ .+ ++..+.+.+..+.+.||--+.+++--+ .+.+.+ ++..+.+... |.|.|-.|.+.|..+|..+. .++.
T Consensus 261 e-~~-IL~qLV~~l~~~~WEVRHGGLLGLKYL----~DLL~~Ld~Vv~aVL~G-L~D~DDDVRAVAAetLiPIA--~p~~ 331 (800)
T 3oc3_A 261 P-ND-IIEQLVGFLDSGDWQVQFSGLIALGYL----KEFVEDKDGLCRKLVSL-LSSPDEDIKLLSAELLCHFP--ITDS 331 (800)
T ss_dssp S-CC-HHHHHTTGGGCSCHHHHHHHHHHHHHT----GGGCCCHHHHHHHHHHH-TTCSSHHHHHHHHHHHTTSC--CSST
T ss_pred h-HH-HHHHHHhhcCCCCeeehhhhHHHHHHH----HHHHHHHHHHHHHHHhh-cCCcccHHHHHHHHHhhhhc--chhh
Confidence 2 22 223333566788899999999998766 333311 2334555555 68999999999999999998 4431
Q ss_pred hhHHHHHHHhhccHHHHHHHHHHhccCCh--hHHHHHHHHHHhhC--CCChhHHHHHHHHHHHHhcccchHHHHHHHHHH
Q 004394 210 SEEASREREALISKPVIYYLLNRIKEFSE--WAQCLVLELVAKYV--PLDSNEIFDIMNLLEDRLQHANGAVVLSTIKVF 285 (756)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~Ll~~l~~~~~--W~Qi~IL~lL~~y~--p~d~~e~~~il~~l~~~L~~~n~aVvleaik~i 285 (756)
. ..++..+.+.|.+.++ -..-.++++|+.++ |.+......++.++.|.++|+-++|..++.+++
T Consensus 332 l------------~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL 399 (800)
T 3oc3_A 332 L------------DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMV 399 (800)
T ss_dssp H------------HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHT
T ss_pred H------------HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHH
Confidence 1 0123333333333222 13456666666643 111111126788899999999999999999998
Q ss_pred HhhccccchhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHH
Q 004394 286 LHLTLSMTDVHQQVYERIKAPLLTLVSSGSPEQSYAVLSHL 326 (756)
Q Consensus 286 i~l~~~~~~~~~~~l~rl~~~L~~LLss~~~nirYvaL~~l 326 (756)
..+.. .+.-.-+ ...+|-..+.+++=.+++.-
T Consensus 400 ~tfL~--~~~LRLI-------FQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 400 KNLSE--ESIDFLV-------AEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp TTCCC--HHHHHHH-------HHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHh--hhHHHHH-------HHHHHhCCcHHHHHHHHHHH
Confidence 87752 1111111 22233335677777766655
No 115
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=77.97 E-value=1.5 Score=44.79 Aligned_cols=88 Identities=19% Similarity=0.165 Sum_probs=52.9
Q ss_pred hhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCCh
Q 004394 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNS 149 (756)
Q Consensus 70 ~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~p 149 (756)
.++..++...++..--++ + ...+.+=++|+|+.||..|...++. +.+.+++.|+++
T Consensus 57 ~ll~d~~~~VR~~AA~~l-------~------~~~l~~L~~D~~~~VR~~aA~~L~~-----------~~L~~ll~D~d~ 112 (244)
T 1lrv_A 57 QYLADPFWERRAIAVRYS-------P------VEALTPLIRDSDEVVRRAVAYRLPR-----------EQLSALMFDEDR 112 (244)
T ss_dssp GGTTCSSHHHHHHHHTTS-------C------GGGGGGGTTCSSHHHHHHHHTTSCS-----------GGGGGTTTCSCH
T ss_pred HHhcCCCHHHHHHHHHhC-------C------HHHHHHHccCcCHHHHHHHHHHCCH-----------HHHHHHHcCCCH
Confidence 345666666665544322 1 1235555677888888777765431 246677788888
Q ss_pred HHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHH
Q 004394 150 YVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLS 197 (756)
Q Consensus 150 yVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~ 197 (756)
.||..|+..+ .+ +.+..+ ++|+|+.|...+..
T Consensus 113 ~VR~~aA~~l------~~---------~~L~~L-~~D~d~~VR~~aA~ 144 (244)
T 1lrv_A 113 EVRITVADRL------PL---------EQLEQM-AADRDYLVRAYVVQ 144 (244)
T ss_dssp HHHHHHHHHS------CT---------GGGGGG-TTCSSHHHHHHHHH
T ss_pred HHHHHHHHhC------CH---------HHHHHH-HcCCCHHHHHHHHH
Confidence 8887777642 11 123444 57888888777654
No 116
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=76.44 E-value=47 Score=35.28 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhccccchhHHHHHHHHHH------------HHHHhhc---CCCcchHHHHHHHH
Q 004394 262 IMNLLEDRLQHANGAVVLSTIKVFLHLTLSMTDVHQQVYERIKA------------PLLTLVS---SGSPEQSYAVLSHL 326 (756)
Q Consensus 262 il~~l~~~L~~~n~aVvleaik~ii~l~~~~~~~~~~~l~rl~~------------~L~~LLs---s~~~nirYvaL~~l 326 (756)
++..+..++.+....|+-.|.+++..+..+.+.... ++.+.+. .|+.+|. +.+.+++--++-.|
T Consensus 203 fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~-lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 203 TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP-LFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch-HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 455555555556666766666665544332222111 1222222 4667775 67889998888888
Q ss_pred HHHHhhCC
Q 004394 327 HILVMRAP 334 (756)
Q Consensus 327 ~~L~~~~p 334 (756)
+.++...|
T Consensus 282 N~lL~~ap 289 (339)
T 3dad_A 282 NKTLAALP 289 (339)
T ss_dssp HHHHHHCS
T ss_pred HHHHhcCC
Confidence 88877655
No 117
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=73.20 E-value=55 Score=37.47 Aligned_cols=132 Identities=13% Similarity=0.142 Sum_probs=87.5
Q ss_pred hhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCC-
Q 004394 70 MCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNN- 148 (756)
Q Consensus 70 ~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~- 148 (756)
+....+.-+.+.=|-|.+..+.+--.+ .--+++.+.+-|.|++.-||+.|..+|.-+..++-++.+...+=.+|.+-+
T Consensus 270 ~~l~~~~WEVRHGGLLGLKYL~DLL~~-Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDD 348 (800)
T 3oc3_A 270 GFLDSGDWQVQFSGLIALGYLKEFVED-KDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEEL 348 (800)
T ss_dssp TGGGCSCHHHHHHHHHHHHHTGGGCCC-HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCS
T ss_pred hhcCCCCeeehhhhHHHHHHHHHHHHH-HHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcc
Confidence 334667788888777777755221112 356788889999999999999999999888665555555555555554322
Q ss_pred hHHHHHHHHHH-HHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHH
Q 004394 149 SYVRTVAVIGV-LKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIW 203 (756)
Q Consensus 149 pyVRKkAalal-~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~ 203 (756)
--.-...+|-+ .+++...+....++..+++|..+ +...-++|..+++.+|..+.
T Consensus 349 LSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PF-LRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 349 ISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPC-FTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp CCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGG-GTCSSHHHHHHHHHHTTTCC
T ss_pred cchhhHHHHHHHHHHHcCCcccccChHHHHHHHhh-hcCCcHHHHHHHHHHHHHHH
Confidence 12223344433 44555555555567788888887 68888999988888876653
No 118
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=71.38 E-value=45 Score=33.20 Aligned_cols=90 Identities=10% Similarity=0.048 Sum_probs=57.6
Q ss_pred HHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcccchhHHHHHH
Q 004394 138 GPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEASTSEEASRER 217 (756)
Q Consensus 138 ~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~~~~~~~~~~ 217 (756)
+.+.+-..|+++++||.|+.+.+..+.. .+ . ....+.+..+ +.|++.-|.-+.--+|.++.+++|+
T Consensus 134 ~~l~~W~~s~~~w~rR~ai~~~l~~~~~-~d-~--~~~~~~i~~~-~~d~~~yV~kAvgW~Lr~~~k~~p~--------- 199 (232)
T 3jxy_A 134 AYIPKWIASDNIWLQRAAILFQLKYKQK-MD-E--ELLFWIIGQL-HSSKEFFIQKAIGWVLREYAKTNPD--------- 199 (232)
T ss_dssp GTHHHHHHSSCHHHHHHHHHTTTTCGGG-CC-H--HHHHHHHHHH-TTCCCHHHHHHHHHHHHHHTTTCHH---------
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHhC-CC-H--HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhCHH---------
Confidence 3466677899999999999987654321 11 1 1233445554 6899999988888889999887653
Q ss_pred HhhccHHHHHHHHHHhccCChhHHHHHHHHHH
Q 004394 218 EALISKPVIYYLLNRIKEFSEWAQCLVLELVA 249 (756)
Q Consensus 218 ~~ll~~~~~~~Ll~~l~~~~~W~Qi~IL~lL~ 249 (756)
.+...+..- ..++|..-+.++-|.
T Consensus 200 -------~v~~fl~~~-~l~~~~~r~A~k~l~ 223 (232)
T 3jxy_A 200 -------VVWEYVQNN-ELAPLSKREAIKHIK 223 (232)
T ss_dssp -------HHHHHHHHS-CCCHHHHHHHTTTTH
T ss_pred -------HHHHHHHHC-CCCHHHHHHHHHhcc
Confidence 223333322 567777666655543
No 119
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=67.60 E-value=6.7 Score=39.54 Aligned_cols=71 Identities=6% Similarity=-0.055 Sum_probs=52.9
Q ss_pred cCCCChHHHHHHHH----HHhcCC----hhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHH
Q 004394 109 CKDEDPMIRGLALR----SLCSLR----VANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLK 180 (756)
Q Consensus 109 L~s~Np~iR~LALr----tLs~I~----~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~ 180 (756)
..|+|+..|-.|+- .++... ...-.+.+...+...+.|++.||||...-++..+...+|+.+ ..+++...
T Consensus 117 ~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~~v~kAi~W~Lr~~gk~~~~~~--~~al~~~~ 194 (235)
T 1t06_A 117 IASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPERTKSAMNNFLNTVAISYVPLH--EKAVEIAK 194 (235)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhhCHHHH--HHHHHHHH
Confidence 46888888888888 556544 234566777778888899999999999999988888888876 44555444
Q ss_pred H
Q 004394 181 H 181 (756)
Q Consensus 181 ~ 181 (756)
+
T Consensus 195 ~ 195 (235)
T 1t06_A 195 E 195 (235)
T ss_dssp H
T ss_pred H
Confidence 4
No 120
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=66.41 E-value=1.5e+02 Score=32.16 Aligned_cols=172 Identities=17% Similarity=0.216 Sum_probs=103.1
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhH-----HHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhC--CCcchH
Q 004394 375 VTELCEYAANVDIPIARESIRAVGKIALQQYDVNA-----IVDRLLQFLEMEKD-YVTAEALVLVKDLLRKY--PQWSHD 446 (756)
Q Consensus 375 v~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~-----~vd~Ll~LL~~~~~-~v~~E~i~~i~~Il~~~--p~~~~~ 446 (756)
+..|++-..+.|+.=|..+-..+.++-.|+..... +-+.+.+++-.... .-..|.+..+..|++.+ |-..+.
T Consensus 131 i~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeeh 210 (403)
T 3fga_B 131 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 210 (403)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHH
Confidence 44455555666665555454555555555543222 22556666543322 34678888888898876 333333
Q ss_pred HHHHHHHhhh-ccCC-chhHHHHHHhHhccCCCCCCC-hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh-hhHH
Q 004394 447 CIAVVGSISS-QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQK 522 (756)
Q Consensus 447 ~~~~l~~l~~-~~i~-~p~ak~a~iWiLGEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~-e~~~ 522 (756)
...+..-++. .... -..--.-+++++-.|.+.-+. +..+++.+++.|.... +.=+...|.-+..+.-..++ +.+.
T Consensus 211 k~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~Ele~iLe~~~~~~f~~ 289 (403)
T 3fga_B 211 KIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFVK 289 (403)
T ss_dssp HHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3222222221 1111 111223466777777655433 7789999999999988 77777888888877765543 4444
Q ss_pred HHHHH---HHhhhcCCChHHHhHHHHHH
Q 004394 523 VLGAA---LAAGLADFHQDVHDRALFYH 547 (756)
Q Consensus 523 ~l~~v---L~~~~~d~d~dVrdRA~~Y~ 547 (756)
+...+ +..|..+.+..|=+||..+|
T Consensus 290 i~~~lf~~la~ci~S~hfqVAErAL~~w 317 (403)
T 3fga_B 290 IMEPLFRQLAKCVSSPHFQVAERALYYW 317 (403)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence 44444 44667888999999999998
No 121
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=66.30 E-value=44 Score=35.48 Aligned_cols=60 Identities=12% Similarity=0.139 Sum_probs=47.8
Q ss_pred hcCCCChHHHHHHHHHHHHHhhhcCCcccCCCch-----HHHHHhHhcCCChhHHHHHHHHHHHHHhh
Q 004394 143 GLKDNNSYVRTVAVIGVLKLYHISAPTCIDADFP-----PTLKHLMLNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 143 ~L~d~~pyVRKkAalal~kl~~~~p~~~~~~~~i-----~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
.|.+.+.-.+|.|...+.+++..+++.+ ++|+ ..|.+. ..+.+....+-++.+|.++..+
T Consensus 126 kL~~~~~~~lr~aLfsLk~~~q~D~~Fa--~EFI~~~GL~~Li~v-i~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 126 KLYSSSGPELRRSLFSLKQIFQEDKDLV--PEFVHSEGLSCLIRV-GAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHTCTTHH--HHHHHTTHHHHHHHH-HTTSCHHHHHHHHHHHHHHTTS
T ss_pred HHhcCCcHHHHHHHHHHHHHhhcchHHH--HHHHHhccHHHHHHH-HHhcChHHHHHHHHHHHHHHhc
Confidence 3445778889999999999999888876 3443 566665 5788999999999999999765
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.98 E-value=20 Score=33.08 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=52.2
Q ss_pred HHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC------------ChhhhHHHHHHHHHhhcCCCChH
Q 004394 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNSY 150 (756)
Q Consensus 83 ~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I------------~~~ei~e~l~~~v~~~L~d~~py 150 (756)
+.+-++-..+.+++..--++-.|+|-+++.||.+.-+||..+-.+ ...++.+. +.++++..++-
T Consensus 25 ~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e----l~~l~~~~~~~ 100 (140)
T 3ldz_A 25 LILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE----VSNVLNKGHPK 100 (140)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH----HHHHHHHSCHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH----HHHHhccCCHH
Confidence 344566666777788888999999999999999888887765432 33444444 34444446778
Q ss_pred HHHHHHHHHHHHh
Q 004394 151 VRTVAVIGVLKLY 163 (756)
Q Consensus 151 VRKkAalal~kl~ 163 (756)
||++....+..-.
T Consensus 101 Vk~kil~li~~W~ 113 (140)
T 3ldz_A 101 VCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888766655443
No 123
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=62.12 E-value=19 Score=35.62 Aligned_cols=129 Identities=8% Similarity=-0.108 Sum_probs=72.6
Q ss_pred hhhccCCChhhHHHHHHHHHHccccCChHHHHHHHHHHHHcCCCC-hHHHHHHHHHHhcCC--hhhhHHHHHHHHHhhcC
Q 004394 69 VMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDED-PMIRGLALRSLCSLR--VANLVEYLVGPLGLGLK 145 (756)
Q Consensus 69 i~l~~s~d~~~KkL~YLyl~~~~~~~~el~lL~iNtl~KDL~s~N-p~iR~LALrtLs~I~--~~ei~e~l~~~v~~~L~ 145 (756)
..+..++-++.+-++-+++....+.-.+-.+-.+..+... -+| ..+=++| ++++.+- .++ .+.+.+.+-+.
T Consensus 61 ~~L~~s~~~E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~--~~nWd~~D~~a-~~~~~~~~~~~~---~~~~~i~~W~~ 134 (220)
T 2b6c_A 61 EAYYQKTEREYQYVAIDLALQNVQRFSLEEVVAFKAYVPQ--KAWWDSVDAWR-KFFGSWVALHLT---ELPTIFALFYG 134 (220)
T ss_dssp HHHHTSSSHHHHHHHHHHHHHTGGGCCHHHHHHGGGGTTT--TCSHHHHHHHH-HHHHHHHHHSGG---GHHHHHHHHTT
T ss_pred HHHHcCchhHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcc--CCcHHHHHHHH-HHHHHHHHHChH---HHHHHHHHHHc
Confidence 3466666677776666666655433122212222222222 122 2333444 4444331 121 23445778889
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 146 DNNSYVRTVAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 146 d~~pyVRKkAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
|++.++||.|+.+.+...+. ... ....+.+..+ +.|++--|.-+.--+|.++.+++|+
T Consensus 135 s~~~w~rR~ai~~~l~~~~~--~~~--~~~~~i~~~~-~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 135 AENFWNRRVALNLQLMLKEK--TNQ--DLLKKAIIYD-RTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp CSSHHHHHHHHHTTTTCGGG--CCH--HHHHHHHHHT-TTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHC--CCH--HHHHHHHHHh-CCChHHHHHHHHHHHHHHHHhhCHH
Confidence 99999999999987533221 111 1123444444 6899999988888889999887653
No 124
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=61.94 E-value=54 Score=32.75 Aligned_cols=69 Identities=4% Similarity=-0.111 Sum_probs=45.8
Q ss_pred HHHhhcCCCChHHHHHHHH----HHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 139 PLGLGLKDNNSYVRTVAVI----GVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 139 ~v~~~L~d~~pyVRKkAal----al~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
.+.+.+.|++.++|+.|+. -+..+..+.++.-....+.+.+... +.|++..|.-+.--+|.++..+++.
T Consensus 112 ~~~~W~~s~~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~-l~~~~~~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 112 VADKWIASGDELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDT-IHHSPERTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHH-GGGSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHH-ccCChHHHHHHHHHHHHHHHhhCHH
Confidence 4556667899999999999 4444222222211113345556555 5888999988888888999887764
No 125
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=61.57 E-value=28 Score=32.96 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=49.9
Q ss_pred HHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhc------------CChhhhHHHHHHHHHhhcCC-CChHHH
Q 004394 86 YVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGLKD-NNSYVR 152 (756)
Q Consensus 86 yl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~------------I~~~ei~e~l~~~v~~~L~d-~~pyVR 152 (756)
-++-..+.+++..--++-.|+|-+++.||.+.-+||.-+-. |...++.+.+ .+++.. .++-||
T Consensus 38 eicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el----~~l~~~~~~~~Vk 113 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV----RAVIKNKAHPKVC 113 (163)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH----HHHHHTTCCHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH----HHHHccCCCHHHH
Confidence 34444445566778889999999999999999888877643 2334444443 344433 567888
Q ss_pred HHHHHHHHHHhh
Q 004394 153 TVAVIGVLKLYH 164 (756)
Q Consensus 153 KkAalal~kl~~ 164 (756)
+++...+..-..
T Consensus 114 ~kil~li~~W~~ 125 (163)
T 1x5b_A 114 EKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888776554443
No 126
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=58.55 E-value=8.9 Score=38.10 Aligned_cols=76 Identities=8% Similarity=-0.026 Sum_probs=56.0
Q ss_pred ccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 92 KVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 92 ~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
..+|+.+. ..+.+=+.|+|+.+|-.|+-+.-.-....-.+.+.+.+..++.|++-||||..+-++--+++.+|+.+
T Consensus 119 ~~~~~~~~---~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v 194 (220)
T 2b6c_A 119 ALHLTELP---TIFALFYGAENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWV 194 (220)
T ss_dssp HHSGGGHH---HHHHHHTTCSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHChHHHH---HHHHHHHcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHH
Confidence 34565322 23555678899999988877553333333446667777879999999999999999999999998876
No 127
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=57.24 E-value=6 Score=39.75 Aligned_cols=62 Identities=6% Similarity=-0.028 Sum_probs=48.5
Q ss_pred cCCCChHHHHHHHHHHhcCChhhhHHHHHHHHHhhcCCCChHHHHHHHHHHHHHhhhcCCcc
Q 004394 109 CKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGLGLKDNNSYVRTVAVIGVLKLYHISAPTC 170 (756)
Q Consensus 109 L~s~Np~iR~LALrtLs~I~~~ei~e~l~~~v~~~L~d~~pyVRKkAalal~kl~~~~p~~~ 170 (756)
..|+|+.+|-.|+-.+-.-....-.+.+...+..++.|++.||||..+-++--+++.+|+.+
T Consensus 140 ~~s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~v 201 (232)
T 3jxy_A 140 IASDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDVV 201 (232)
T ss_dssp HHSSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHHH
Confidence 35789999988876654333333345666778888999999999999999999999998876
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=57.14 E-value=42 Score=31.29 Aligned_cols=86 Identities=8% Similarity=-0.124 Sum_probs=58.5
Q ss_pred HHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Ch----hhh-HHHHHHHHHhhcCC------CC
Q 004394 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANL-VEYLVGPLGLGLKD------NN 148 (756)
Q Consensus 83 ~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~----~ei-~e~l~~~v~~~L~d------~~ 148 (756)
+.+-++-..+.+++..--++..|+|-++++||.+.-+||..+-.+ +. .++ .+.+...+.+++.+ .+
T Consensus 31 ~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~ 110 (149)
T 3g2s_A 31 SINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS 110 (149)
T ss_dssp HHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC
T ss_pred HHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC
Confidence 445566667778888889999999999999999999998866543 11 111 13334445566653 46
Q ss_pred hHHHHHHHHHHHHHhhhcCC
Q 004394 149 SYVRTVAVIGVLKLYHISAP 168 (756)
Q Consensus 149 pyVRKkAalal~kl~~~~p~ 168 (756)
+-||++....+..-....++
T Consensus 111 ~~Vk~kil~li~~W~~~f~~ 130 (149)
T 3g2s_A 111 EKVKNKILELLYSWTVGLPE 130 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 78998887777665554443
No 129
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=56.24 E-value=48 Score=30.78 Aligned_cols=82 Identities=10% Similarity=-0.068 Sum_probs=55.6
Q ss_pred HHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC---Ch----hhh-HHHHHHHHHhhcCC------CCh
Q 004394 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL---RV----ANL-VEYLVGPLGLGLKD------NNS 149 (756)
Q Consensus 84 YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I---~~----~ei-~e~l~~~v~~~L~d------~~p 149 (756)
.+-++-..+.+++..--++-.|+|-++++||.+.-+||..+-.+ +. .++ .+.+...+.+.+.+ .++
T Consensus 22 ~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~ 101 (148)
T 1mhq_A 22 IQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATG 101 (148)
T ss_dssp HHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCH
Confidence 34455555666777888999999999999999999998876543 11 122 24445556666654 367
Q ss_pred HHHHHHHHHHHHHhhh
Q 004394 150 YVRTVAVIGVLKLYHI 165 (756)
Q Consensus 150 yVRKkAalal~kl~~~ 165 (756)
-||+++...+..-...
T Consensus 102 ~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 102 KVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8998887666554443
No 130
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=55.41 E-value=2e+02 Score=31.08 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=101.4
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChh-----HHHHHHHHHhhhcCc-hhhHHHHHHHHHHHhhCC--CcchH
Q 004394 375 VTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEKD-YVTAEALVLVKDLLRKYP--QWSHD 446 (756)
Q Consensus 375 v~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~-----~~vd~Ll~LL~~~~~-~v~~E~i~~i~~Il~~~p--~~~~~ 446 (756)
+..|++-..+.|+.=|..+..-+.++-.|+.... .+-+.+.+++..... .-..|.+..+..|++.+. =..+.
T Consensus 176 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeeh 255 (392)
T 2jak_A 176 VLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEH 255 (392)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHH
Confidence 4445555566666555555555566666665432 233556666654332 345788888888888763 22222
Q ss_pred HHHHHHHhhh--ccCC-chhHHHHHHhHhccCCCCCC-ChHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCCh-hhH
Q 004394 447 CIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQ-DAPYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRPP-ETQ 521 (756)
Q Consensus 447 ~~~~l~~l~~--~~i~-~p~ak~a~iWiLGEy~~~i~-~~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p~-e~~ 521 (756)
.. .+.+.+. .... -+.--.-+++++-.|.+.-+ -+..+++.+++.|.... ..=+...|.-+..+.-..++ +.+
T Consensus 256 k~-Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~eleeiLe~~~~~~f~ 333 (392)
T 2jak_A 256 KI-FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEFV 333 (392)
T ss_dssp HH-HHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSC-CTTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HH-HHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHHH
Confidence 22 2223221 1111 11112345666666655433 26788999999998876 54566777777777665554 334
Q ss_pred HHHHHH---HHhhhcCCChHHHhHHHHHHH
Q 004394 522 KVLGAA---LAAGLADFHQDVHDRALFYHR 548 (756)
Q Consensus 522 ~~l~~v---L~~~~~d~d~dVrdRA~~Y~r 548 (756)
.+...+ +..|..+.+..|=+||..+|.
T Consensus 334 ~i~~~lF~~la~ci~S~hfqVAErAL~~wn 363 (392)
T 2jak_A 334 KIMEPLFRQLAKCVSSPHFQVAERALYYWN 363 (392)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence 444444 556778899999999999983
No 131
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=55.36 E-value=2.4e+02 Score=30.97 Aligned_cols=172 Identities=15% Similarity=0.177 Sum_probs=104.3
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChh-----HHHHHHHHHhhhcC-chhhHHHHHHHHHHHhhCC--Ccch
Q 004394 374 IVTELCEYAANVDIPIARESIRAVGKIALQQYDVN-----AIVDRLLQFLEMEK-DYVTAEALVLVKDLLRKYP--QWSH 445 (756)
Q Consensus 374 Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~-----~~vd~Ll~LL~~~~-~~v~~E~i~~i~~Il~~~p--~~~~ 445 (756)
.+..|++...+.|+.=|..+-..+.++-.|+.... .+-+++.+++.... -+-..|.+..+..|++.+. -..+
T Consensus 163 Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKee 242 (449)
T 2npp_B 163 FVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEE 242 (449)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHH
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHH
Confidence 34455666666666555555555566666765432 23355666664332 2456788888888988763 2222
Q ss_pred HHHHHHHHhhh--ccCC-chhHHHHHHhHhccCCCCCCC-hHHHHHHHhhhhccCChHHHHHHHHHHhhHhhhcCC-hhh
Q 004394 446 DCIAVVGSISS--QNVQ-EPKAKAALIWMLGEYSQDMQD-APYILESLTENWEEEPSAEVRLHLLTAVMKCFFKRP-PET 520 (756)
Q Consensus 446 ~~~~~l~~l~~--~~i~-~p~ak~a~iWiLGEy~~~i~~-~~~iL~~l~~~f~~e~~~~Vq~~lLtA~~Kl~~~~p-~e~ 520 (756)
... .+.+.+. .... -+.--.-+++++-.|.+.-+. +..+++.+++.|.... ..=+...|.-+..++-..+ .+.
T Consensus 243 hk~-fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tn-s~KevlFL~eleeile~~~~~ef 320 (449)
T 2npp_B 243 HKI-FLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTH-SPKEVMFLNELEEILDVIEPSEF 320 (449)
T ss_dssp HHH-HHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSC-HHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHH-HHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCC-chHHHHHHHHHHHHHHhCCHHHH
Confidence 222 2223221 1111 111223456777777655433 6789999999999887 6667778887777775544 344
Q ss_pred HHHHHHH---HHhhhcCCChHHHhHHHHHH
Q 004394 521 QKVLGAA---LAAGLADFHQDVHDRALFYH 547 (756)
Q Consensus 521 ~~~l~~v---L~~~~~d~d~dVrdRA~~Y~ 547 (756)
+.+...+ +..|..+.+..|=+||..+|
T Consensus 321 ~~i~~~lF~~la~ci~S~hfqVAErAL~~w 350 (449)
T 2npp_B 321 VKIMEPLFRQLAKCVSSPHFQVAERALYYW 350 (449)
T ss_dssp HHHHHHHHHHHHHHHTCSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4444444 55677889999999999998
No 132
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=55.32 E-value=52 Score=31.33 Aligned_cols=81 Identities=9% Similarity=-0.036 Sum_probs=57.8
Q ss_pred HHHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC------------ChhhhHHHHHHHHHhhcC-----
Q 004394 83 CYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLK----- 145 (756)
Q Consensus 83 ~YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I------------~~~ei~e~l~~~v~~~L~----- 145 (756)
..+-++-..+.+++..--++-.|+|-++++||.+.-+||.-+-.+ ...++.+ .+.+++.
T Consensus 33 ~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~----eL~kl~~~k~~~ 108 (171)
T 1juq_A 33 YIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLN----ELIKVVSPKYLG 108 (171)
T ss_dssp HHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHH----HHHHHHCCCCCC
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHH----HHHHHhccccCC
Confidence 345566666777788888999999999999999999998876543 3344444 4555554
Q ss_pred -CCChHHHHHHHHHHHHHhhhcC
Q 004394 146 -DNNSYVRTVAVIGVLKLYHISA 167 (756)
Q Consensus 146 -d~~pyVRKkAalal~kl~~~~p 167 (756)
..++-||+++...+..-....+
T Consensus 109 ~~~~~~Vk~kil~li~~W~~~f~ 131 (171)
T 1juq_A 109 DRVSEKVKTKVIELLYSWTMALP 131 (171)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHcC
Confidence 2468999998887776655443
No 133
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=55.29 E-value=56 Score=32.24 Aligned_cols=74 Identities=14% Similarity=0.046 Sum_probs=52.0
Q ss_pred HHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhc------------CChhhhHHHHHHHHHhhcCCCChHHH
Q 004394 85 LYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGLKDNNSYVR 152 (756)
Q Consensus 85 Lyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~------------I~~~ei~e~l~~~v~~~L~d~~pyVR 152 (756)
+.+.-..+.+++..--++-.|+|-++++||.+.-+||.-+-. |...++.+.+..-+.+ ..++-||
T Consensus 27 leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~---~~~~~Vk 103 (220)
T 1dvp_A 27 LLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES---TPHENVR 103 (220)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH---CSCHHHH
T ss_pred HHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC---CCcHHHH
Confidence 445555566677778899999999999999999999877655 3445555555444333 4578899
Q ss_pred HHHHHHHHH
Q 004394 153 TVAVIGVLK 161 (756)
Q Consensus 153 KkAalal~k 161 (756)
+++..-+..
T Consensus 104 ~kil~li~~ 112 (220)
T 1dvp_A 104 QKMLELVQT 112 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887655443
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=54.41 E-value=75 Score=29.52 Aligned_cols=85 Identities=12% Similarity=0.058 Sum_probs=54.0
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHh-h
Q 004394 305 APLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYA-A 383 (756)
Q Consensus 305 ~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl-~ 383 (756)
..|.+-|.++++++++.+|..+..+++....-|..++.. +.=++-|.+++... |. .
T Consensus 51 ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias------------~~Fl~eL~kl~~~k-----------~~~~ 107 (149)
T 3g2s_A 51 RLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK------------FRFLNELIKVVSPK-----------YLGS 107 (149)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS------------HHHHHHHHHHHCTT-----------TTGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh------------HHHHHHHHHHHccc-----------ccCC
Confidence 345555677899999999999999999988766554321 11222233333322 22 1
Q ss_pred hCCHHHHHHHHHHHHHHHhhcCChhHHHH
Q 004394 384 NVDIPIARESIRAVGKIALQQYDVNAIVD 412 (756)
Q Consensus 384 ~~D~~~~~~~I~aIg~lA~k~~~~~~~vd 412 (756)
..+..++.++..-|..-+..|++...+.+
T Consensus 108 ~~~~~Vk~kil~li~~W~~~f~~~p~i~~ 136 (149)
T 3g2s_A 108 RTSEKVKNKILELLYSWTVGLPEEVKIAE 136 (149)
T ss_dssp GSCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCchHHH
Confidence 35777888888888888877765433333
No 135
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=54.29 E-value=14 Score=45.13 Aligned_cols=101 Identities=9% Similarity=0.015 Sum_probs=70.4
Q ss_pred hhhhhhhccCCCh-hhHHH-HHHHHHHccc--cCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhcC-------Chhhh
Q 004394 65 FGEMVMCSATSDI-VLKKM-CYLYVGNYAK--VNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCSL-------RVANL 132 (756)
Q Consensus 65 F~~Vi~l~~s~d~-~~KkL-~YLyl~~~~~--~~~el~lL~iNtl~KDL~-s~Np~iR~LALrtLs~I-------~~~ei 132 (756)
+|.+..+...+|- ++.++ .+..+..++. -.++.+-.+++.+.+-.+ ++|- .|..+|..+-.+ -.++-
T Consensus 762 lP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~ 840 (997)
T 1vsy_5 762 LPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEE 840 (997)
T ss_dssp TTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTH
T ss_pred HHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3334445555555 67777 5555555432 245556678889977776 5677 999888885432 22333
Q ss_pred HHHHHHHHHhhcCCCC-hHHHHHHHHHHHHHhhhc
Q 004394 133 VEYLVGPLGLGLKDNN-SYVRTVAVIGVLKLYHIS 166 (756)
Q Consensus 133 ~e~l~~~v~~~L~d~~-pyVRKkAalal~kl~~~~ 166 (756)
.+.+...|.++|.|+. ..||..|+.++.-+.+-.
T Consensus 841 ~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~ 875 (997)
T 1vsy_5 841 KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNW 875 (997)
T ss_dssp HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC
Confidence 3677889999999999 999999999998887665
No 136
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.38 E-value=45 Score=31.51 Aligned_cols=50 Identities=12% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 156 VIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 156 alal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
.+.+.-+.+..++.. .+.+..|++. +..+||.|+..|+.+|..+.++.+.
T Consensus 36 ~leicD~I~~~~~~~--keA~ral~kr-l~~~n~~vql~AL~LLd~~vkNcG~ 85 (163)
T 1x5b_A 36 IMDICDKVGSTPNGA--KDCLKAIMKR-VNHKVPHVALQALTLLGACVANCGK 85 (163)
T ss_dssp HHHHHHHHHHSSSHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhCCCccH--HHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHhhH
Confidence 444445555555433 3456667776 5889999999999999988876543
No 137
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.32 E-value=68 Score=31.87 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred HHHHHHccccCChHHHHHHHHHHHHcCCCChHHHHHHHHHHhcC------------ChhhhHHHHHHHHHhhcCCCChHH
Q 004394 84 YLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSL------------RVANLVEYLVGPLGLGLKDNNSYV 151 (756)
Q Consensus 84 YLyl~~~~~~~~el~lL~iNtl~KDL~s~Np~iR~LALrtLs~I------------~~~ei~e~l~~~v~~~L~d~~pyV 151 (756)
.+.++-..+.+++.+--++..|+|-++++||.+.-+||..|-.+ ...++.+.+..-+. ...++-|
T Consensus 29 ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~---~~~~~~V 105 (226)
T 3zyq_A 29 ILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLK---RQVEVNV 105 (226)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHH---HCCCHHH
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhc---cCCCHHH
Confidence 34455555667777888999999999999999999998877553 45555555444332 2356789
Q ss_pred HHHHHHHHHHHh
Q 004394 152 RTVAVIGVLKLY 163 (756)
Q Consensus 152 RKkAalal~kl~ 163 (756)
|+++..-+..-.
T Consensus 106 k~kil~li~~W~ 117 (226)
T 3zyq_A 106 RNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988776655443
No 138
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=47.34 E-value=64 Score=29.56 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 155 Aalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
..+-+.-+.+..|+.. .+.+..|++. +..+||.|...|+.+|..+.++.+
T Consensus 25 ~ileicD~I~~~~~~~--k~a~rai~Kr-l~~~n~~~ql~AL~LLe~~vkNcG 74 (140)
T 3ldz_A 25 LILDICDKVGQSRTGP--KDCLRSIMRR-VNHKDPHVAMQALTLLGACVSNCG 74 (140)
T ss_dssp HHHHHHHHHTTSTTHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCcCH--HHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhcC
Confidence 3444444455444433 3345667776 588999999999999888776544
No 139
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=45.07 E-value=42 Score=37.38 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHcC------CCChHHHHHHHHHHhcC-----ChhhhHHHH--HHHHHhhcCCCChHHHHHHHHHHHH
Q 004394 95 PDLALLTINFLQRDCK------DEDPMIRGLALRSLCSL-----RVANLVEYL--VGPLGLGLKDNNSYVRTVAVIGVLK 161 (756)
Q Consensus 95 ~el~lL~iNtl~KDL~------s~Np~iR~LALrtLs~I-----~~~ei~e~l--~~~v~~~L~d~~pyVRKkAalal~k 161 (756)
-++.-..++-+.++-. +.||.+-|.|..-+|.+ +...+++.+ -..|++++.|+++.||+-|..|+.|
T Consensus 394 ~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 394 YKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQA 473 (480)
T ss_dssp GHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3444455666654332 35788888888888875 234444442 4568899999999999999999999
Q ss_pred Hhhh
Q 004394 162 LYHI 165 (756)
Q Consensus 162 l~~~ 165 (756)
+...
T Consensus 474 lm~~ 477 (480)
T 1ho8_A 474 IIGY 477 (480)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8653
No 140
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=43.02 E-value=5.5e+02 Score=31.46 Aligned_cols=86 Identities=16% Similarity=0.153 Sum_probs=51.1
Q ss_pred hhHHHHHHhHhccCCCCCCC------hHHHHHHHhhhhccC----ChHHHHH---HHHHHhhHhhhcCChhhHHHHHHHH
Q 004394 462 PKAKAALIWMLGEYSQDMQD------APYILESLTENWEEE----PSAEVRL---HLLTAVMKCFFKRPPETQKVLGAAL 528 (756)
Q Consensus 462 p~ak~a~iWiLGEy~~~i~~------~~~iL~~l~~~f~~e----~~~~Vq~---~lLtA~~Kl~~~~p~e~~~~l~~vL 528 (756)
.....+.+|.+|--+..+.. -+.+++.++.-.... ....++. +++....+.....|+-.+.++.+++
T Consensus 493 W~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~ 572 (1073)
T 3gjx_A 493 WKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLF 572 (1073)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHH
Confidence 55678999999988554432 345666665433221 1022333 2444445555555555566677777
Q ss_pred HhhhcCCChHHHhHHHHHHH
Q 004394 529 AAGLADFHQDVHDRALFYHR 548 (756)
Q Consensus 529 ~~~~~d~d~dVrdRA~~Y~r 548 (756)
+. ..+.+++||+-|+.-..
T Consensus 573 ~~-m~~~~~~vq~aA~~af~ 591 (1073)
T 3gjx_A 573 EF-MHETHDGVQDMACDTFI 591 (1073)
T ss_dssp HH-TTCCSTTHHHHHHHHHH
T ss_pred HH-HhcCCHHHHHHHHHHHH
Confidence 54 35679999999986544
No 141
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=41.43 E-value=93 Score=29.54 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhcc
Q 004394 154 VAVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEA 207 (756)
Q Consensus 154 kAalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~ 207 (756)
...+.+.-+.+..++.. .+....|++. +..+|+.|+..|+.+|..+.++.+
T Consensus 32 ~~ileicD~I~~~~~~~--k~A~ral~kr-l~~~n~~vql~AL~LLd~~vkNCG 82 (171)
T 1juq_A 32 EYIIGFCDQINKELEGP--QIAVRLLAHK-IQSPQEWEALQALTVLEACMKNCG 82 (171)
T ss_dssp HHHHHHHHHHHHSTTHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHcCCccH--HHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcC
Confidence 44566666666665543 3456677777 589999999999999998887544
No 142
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=38.94 E-value=89 Score=28.92 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhcCCcccCCCchHHHHHhHhcCCChhHHHHHHHHHHHHHhhccc
Q 004394 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLNDPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 155 Aalal~kl~~~~p~~~~~~~~i~~L~~lLL~D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
+.+-+.-+.+..++.. .+.+..|++. +..+||.|+..|+.+|..+.++.+.
T Consensus 21 ~~leicD~I~~~~~~~--k~a~rai~kr-l~~~n~~vql~AL~LLe~~vkNCG~ 71 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGP--THAPWLLAHK-IQSPQEKEALYALTVLEMCMNHCGE 71 (148)
T ss_dssp HHHHHHHHHHHSSHHH--HHHHHHHHHH-HTCSSHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHcCCccH--HHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHcCH
Confidence 3444444555444332 3345667777 5899999999999999988876553
No 143
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.26 E-value=1.5e+02 Score=27.50 Aligned_cols=78 Identities=10% Similarity=0.031 Sum_probs=51.2
Q ss_pred HHHHHHccccCChHHHHHHHHHHHHcC-CCChHHHHHHHHHHhc------------CChhhhHHHHHHHHHhhcC---CC
Q 004394 84 YLYVGNYAKVNPDLALLTINFLQRDCK-DEDPMIRGLALRSLCS------------LRVANLVEYLVGPLGLGLK---DN 147 (756)
Q Consensus 84 YLyl~~~~~~~~el~lL~iNtl~KDL~-s~Np~iR~LALrtLs~------------I~~~ei~e~l~~~v~~~L~---d~ 147 (756)
-+-++-..+.+++..--++-.|+|-++ ++||.+.-+||.-+-. +...++.+.+ +.+.+. ++
T Consensus 37 ~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~---Lvk~~~~k~~~ 113 (157)
T 1elk_A 37 NMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV---LVRTILPKNNP 113 (157)
T ss_dssp HHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH---THHHHSTTTCC
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH---HHHHhccCCCC
Confidence 444555666677888899999999998 5899988888876653 2334444431 334342 34
Q ss_pred ChHHHHHHHHHHHHHhh
Q 004394 148 NSYVRTVAVIGVLKLYH 164 (756)
Q Consensus 148 ~pyVRKkAalal~kl~~ 164 (756)
+.-||+++...+..-..
T Consensus 114 ~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 114 PTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45898888766655443
No 144
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.60 E-value=1.7e+02 Score=28.85 Aligned_cols=74 Identities=12% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHHHhhCCcccccccceeeecCCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhC
Q 004394 306 PLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFASDYKHFYCQYNEPSYVKKLKLEMLTAVANESNTYEIVTELCEYAANV 385 (756)
Q Consensus 306 ~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~~~~~f~c~~~dp~~IK~~kLdIL~~L~n~~Nv~~Iv~EL~~Yl~~~ 385 (756)
.|.+-|.++++++++.+|..+..++++...-|..++.. +.-|+-|..|+ . ...
T Consensus 49 al~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias------------~~fl~~l~~l~-------------~--~~~ 101 (226)
T 3zyq_A 49 SIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN------------KQTMEELKDLL-------------K--RQV 101 (226)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS------------HHHHHHHHHHH-------------H--HCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc------------HHHHHHHHHHh-------------c--cCC
Confidence 34455667899999999999999998877655544321 11112222221 0 235
Q ss_pred CHHHHHHHHHHHHHHHhhcCC
Q 004394 386 DIPIARESIRAVGKIALQQYD 406 (756)
Q Consensus 386 D~~~~~~~I~aIg~lA~k~~~ 406 (756)
+.+++.++..-|..-+..|++
T Consensus 102 ~~~Vk~kil~li~~W~~~f~~ 122 (226)
T 3zyq_A 102 EVNVRNKILYLIQAWAHAFRN 122 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHhCC
Confidence 677888888888777777753
No 145
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=31.03 E-value=1.4e+02 Score=36.43 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=77.1
Q ss_pred HHccccCChHHHHHHHHHHHHcCCCC-hHHHHHHHHHHhcC--Ch-h-hhHHHHHHHHHhhcCC---C---------ChH
Q 004394 88 GNYAKVNPDLALLTINFLQRDCKDED-PMIRGLALRSLCSL--RV-A-NLVEYLVGPLGLGLKD---N---------NSY 150 (756)
Q Consensus 88 ~~~~~~~~el~lL~iNtl~KDL~s~N-p~iR~LALrtLs~I--~~-~-ei~e~l~~~v~~~L~d---~---------~py 150 (756)
.+++--.++.--.+.+.+.+=|.|++ ..||-.|-.+|+.+ +. + ...+.++...++.+.. . +--
T Consensus 831 ~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~ 910 (997)
T 1vsy_5 831 AELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDI 910 (997)
T ss_dssp HHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCH
T ss_pred HHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 34444445544566888888899999 99999999999987 33 2 4444555555555522 1 113
Q ss_pred HHHHHHHHHHHHhhhcCCcccCCCchHHHHHhH---hcCCChhHHHHHHHHHHHHHhh
Q 004394 151 VRTVAVIGVLKLYHISAPTCIDADFPPTLKHLM---LNDPDPQVVANCLSALQEIWSL 205 (756)
Q Consensus 151 VRKkAalal~kl~~~~p~~~~~~~~i~~L~~lL---L~D~d~~Vv~~Al~aL~eI~~~ 205 (756)
.|-.|++|+.-+..-.|-.+.-+.|++.+...| .+|+.| |-..+=.+|.|..+.
T Consensus 911 ~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 911 KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhc
Confidence 556799999999999998875578987665543 234333 445555666666543
No 146
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=29.92 E-value=1.1e+02 Score=28.07 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=45.7
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHHHhhCCccccc----------ccceeeecCC----CC--HHHHHHHHHHHHHh
Q 004394 302 RIKAPLLTLVSSGSPEQSYAVLSHLHILVMRAPFIFAS----------DYKHFYCQYN----EP--SYVKKLKLEMLTAV 365 (756)
Q Consensus 302 rl~~~L~~LLss~~~nirYvaL~~l~~L~~~~p~lf~~----------~~~~f~c~~~----dp--~~IK~~kLdIL~~L 365 (756)
.+...|.+-|..++++++|=+|+.|..|+...+.-|.. ....|-...+ ++ .-||.++=|++-.|
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 34555666677788999999999999998776543332 2223322211 23 56888888888888
Q ss_pred cCCCC
Q 004394 366 ANESN 370 (756)
Q Consensus 366 ~n~~N 370 (756)
-++++
T Consensus 129 ~d~~~ 133 (140)
T 1vdy_A 129 FSEEN 133 (140)
T ss_dssp TCCSS
T ss_pred hCcCC
Confidence 77665
No 147
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=28.73 E-value=2.1e+02 Score=26.50 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcCCcccCCCchHHHHHhHhc-CCChhHHHHHHHHHHHHHhhccc
Q 004394 155 AVIGVLKLYHISAPTCIDADFPPTLKHLMLN-DPDPQVVANCLSALQEIWSLEAS 208 (756)
Q Consensus 155 Aalal~kl~~~~p~~~~~~~~i~~L~~lLL~-D~d~~Vv~~Al~aL~eI~~~~~~ 208 (756)
..+.+.-+.+..++.. .+.+..|++. ++ .+|+.|+..|+.+|..+.++.+.
T Consensus 36 ~~leicD~I~~~~~~~--k~a~ral~kr-l~~~~n~~v~l~AL~LLd~~vkNcG~ 87 (157)
T 1elk_A 36 LNMEICDIINETEEGP--KDALRAVKKR-IVGNKNFHEVMLALTVLETCVKNCGH 87 (157)
T ss_dssp HHHHHHHHHHHSSSHH--HHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHhCCCccH--HHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHhCH
Confidence 3444444555554433 3456667777 45 68999999999999988876543
No 148
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=28.07 E-value=5.1e+02 Score=27.06 Aligned_cols=88 Identities=20% Similarity=0.352 Sum_probs=56.8
Q ss_pred cCCchhHHHHHHhHhccCCCCCCC-hHHHHHHHh--------hhhccCChHHHHHHH---HHHhh----HhhhcCChhhH
Q 004394 458 NVQEPKAKAALIWMLGEYSQDMQD-APYILESLT--------ENWEEEPSAEVRLHL---LTAVM----KCFFKRPPETQ 521 (756)
Q Consensus 458 ~i~~p~ak~a~iWiLGEy~~~i~~-~~~iL~~l~--------~~f~~e~~~~Vq~~l---LtA~~----Kl~~~~p~e~~ 521 (756)
...+|++...+.-++...++.+.+ .|.+++.+. ++| ++- |+-|... |.|+. ..++..|++..
T Consensus 88 ~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe~TL~MI~~df-~ey-PehR~~Ff~LL~ai~~~cF~al~~lp~~~f 165 (321)
T 1w9c_A 88 AAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDF-EEY-PEHRTNFFLLLQAVNSHCFPAFLAIPPTQF 165 (321)
T ss_dssp GGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHSSTT-TCS-HHHHHHHHHHHHHHHHHCTTHHHHSCHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccc-ccC-hHHHHHHHHHHHHHHHHhHHHHHcCCHHHH
Confidence 346788877777777777776643 666666532 333 233 7777553 33333 33445676654
Q ss_pred HHHHHHHHhhhcCCChHHHhHHHHHH
Q 004394 522 KVLGAALAAGLADFHQDVHDRALFYH 547 (756)
Q Consensus 522 ~~l~~vL~~~~~d~d~dVrdRA~~Y~ 547 (756)
+++-.-+-|+..+.+.+|-|.|....
T Consensus 166 klvidsiiWa~kH~~r~V~e~gL~il 191 (321)
T 1w9c_A 166 KLVLDSIIWAFKHTMRNVADTGLQIL 191 (321)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 55556666888999999999998765
No 149
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=23.89 E-value=2.2e+02 Score=33.69 Aligned_cols=74 Identities=11% Similarity=0.041 Sum_probs=57.9
Q ss_pred HHHHHhcCC--CCHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHhhhcCchhhHHHHHHH
Q 004394 360 EMLTAVANE--SNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTAEALVLV 433 (756)
Q Consensus 360 dIL~~L~n~--~Nv~~Iv~EL~~Yl~~~D~~~~~~~I~aIg~lA~k~~~~~~~vd~Ll~LL~~~~~~v~~E~i~~i 433 (756)
.++.++... .|++.-+.+|...+....+..+..+++.+-+|+...|....+..+++.+++.+...++.+++..+
T Consensus 14 ~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l 89 (771)
T 1h2v_C 14 SLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAM 89 (771)
T ss_dssp HHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHH
Confidence 456666653 56777888888777665677899999999999999998777889999999998776666666543
No 150
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=22.44 E-value=34 Score=32.89 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=24.1
Q ss_pred CccccccccccChhHHHHhhh-cccccc
Q 004394 717 PSLKLNSKAILDPGTFQQKWR-QLPISL 743 (756)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 743 (756)
..+.+|.+|.=+|.+||+.|. |+|.+.
T Consensus 50 ~~Ii~NG~p~a~p~~fqeiw~~Q~p~T~ 77 (184)
T 1of5_B 50 CRIIFNATPFAQATVFLQMWQNQVVQTQ 77 (184)
T ss_dssp CCEEETTEEESCHHHHHHHHHHHSCCCE
T ss_pred ceEEECCeEcCCHHHHHHHHHhcCCCce
Confidence 589999999999999999999 888653
No 151
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=20.49 E-value=7e+02 Score=25.57 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=39.0
Q ss_pred HHHHHHcC-CCChHHHHHHHHHHhcCChhh--------hHHHHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 004394 103 NFLQRDCK-DEDPMIRGLALRSLCSLRVAN--------LVEYLVGPLGLGLKDNNSYVRTVAVIGVLKL 162 (756)
Q Consensus 103 Ntl~KDL~-s~Np~iR~LALrtLs~I~~~e--------i~e~l~~~v~~~L~d~~pyVRKkAalal~kl 162 (756)
+++.+-+. +.+|..+-+++|++||+-... ..+.++..+..++.+++..+|-.++-.++.+
T Consensus 150 ~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~Nl 218 (304)
T 3ebb_A 150 SHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNY 218 (304)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 33333333 357888999999999984322 2234455566666777888887777666543
Done!