BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004396
(756 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP----TIDLI--LILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + LI L+L+N
Sbjct: 110 FHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN 169
Query: 275 P--ATSF 279
P AT+F
Sbjct: 170 PESATTF 176
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP----TIDLI--LILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + LI L+L+N
Sbjct: 93 FHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN 152
Query: 275 P--ATSF 279
P AT+F
Sbjct: 153 PESATTF 159
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP----TIDLI--LILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + LI L+L+N
Sbjct: 111 FHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN 170
Query: 275 P--ATSF 279
P AT+F
Sbjct: 171 PESATTF 177
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 221 FEGLVKFVEETVRREHASSPEKPIYLVGDSFGGCLALAVAARNP------TIDLILILSN 274
F V+ V + V P P++L+G S GG +A+ AA P + L+L+N
Sbjct: 110 FHVFVRDVLQHVDSXQKDYPGLPVFLLGHSXGGAIAILTAAERPGHFAGXVLISPLVLAN 169
Query: 275 P--ATSF 279
P AT+F
Sbjct: 170 PESATTF 176
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 22/97 (22%)
Query: 240 PEKPIYLVGDSFGGCLALAVAARNP--TIDLILI-LSNPATSFGR----SQL-------- 284
P++P+ LVG S G LA A+A+ P +LIL+ L PA + +QL
Sbjct: 93 PDQPLLLVGHSMGAMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQLTTCLDYLS 152
Query: 285 ----QPLFPILKAMPDELHCAVPYL---LSYVMGDPI 314
P+FP + L A+P L SY++ I
Sbjct: 153 STPQHPIFPDVATAASRLRQAIPSLSEEFSYILAQRI 189
>pdb|1VH4|A Chain A, Crystal Structure Of A Stabilizer Of Iron Transporter
pdb|1VH4|B Chain B, Crystal Structure Of A Stabilizer Of Iron Transporter
Length = 435
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 679 VPGRFYYLFGKPIQTKGREVSLKDKENA------NELYLHIKSQVERCLDYLLKKREEDP 732
V GR+ + G EVS+ D E++LH+ + + + ++ KR + P
Sbjct: 91 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRP 150
Query: 733 YRNIIDRTAYRAVYGDEVPT 752
+ ++ + V G+EV T
Sbjct: 151 AKPLLLMHITQGVAGEEVNT 170
>pdb|2ZU0|A Chain A, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|B Chain B, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 423
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 679 VPGRFYYLFGKPIQTKGREVSLKDKENA------NELYLHIKSQVERCLDYLLKKREEDP 732
V GR+ + G EVS+ D E++LH+ + + + ++ KR + P
Sbjct: 89 VDGRYVPALSDATEGSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRP 148
Query: 733 YRNIIDRTAYRAVYGDEVPT 752
+ ++ + V G+EV T
Sbjct: 149 AKPLLLMHITQGVAGEEVNT 168
>pdb|3IZB|O Chain O, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|G Chain G, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|N Chain N, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 151
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 674 GLLPKVPGRFYYLFGKPIQTKGR-EVSLKDKENANELYLHIKSQVERCLDY 723
GL P++P YYL K + + E + KDK+ L L I+S++ R Y
Sbjct: 79 GLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLIL-IESRIHRLARY 128
>pdb|3JYV|O Chain O, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 84
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 674 GLLPKVPGRFYYLFGKPIQTKGR-EVSLKDKENANELYLHIKSQVERCLDY 723
GL P++P YYL K + + E + KDK+ L L I+S++ R Y
Sbjct: 14 GLAPEIPEDLYYLIKKAVSVRKHLERNRKDKDAKFRLIL-IESRIHRLARY 63
>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
Length = 333
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 44 LFKTMASVINFPVSPSFVINSQYKTSFRARAQSVGGGDSTVLSSGSIAVNGDPVSREKEK 103
LF+ + + P IN Y+T +GGG + S+ ++ + G + + K
Sbjct: 150 LFRIVTPYFSTKNIPCIAINHTYETQEMFSKTVMGGGTGPMYSADTVFIIG----KRQIK 205
Query: 104 NGALIDVGNGTLKPRVEKKKLVKNVISEELEVLWDDGYGTDSVKDYLDAAKE---IIKPD 160
+G+ D+ VEK + VK ++V +D G D LD A E ++KP
Sbjct: 206 DGS--DLQGYQFVLNVEKSRTVKEKSKFFIDVKFDG--GIDPYSGLLDMALELGFVVKPK 261
Query: 161 GGPPRWFC 168
G W+
Sbjct: 262 NG---WYA 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,586,937
Number of Sequences: 62578
Number of extensions: 902276
Number of successful extensions: 2509
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2504
Number of HSP's gapped (non-prelim): 17
length of query: 756
length of database: 14,973,337
effective HSP length: 106
effective length of query: 650
effective length of database: 8,340,069
effective search space: 5421044850
effective search space used: 5421044850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)