Query 004397
Match_columns 756
No_of_seqs 266 out of 763
Neff 4.6
Searched_HMMs 46136
Date Thu Mar 28 22:44:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00151 potassium transporter 100.0 2E-254 5E-259 2141.1 64.2 730 26-756 71-852 (852)
2 PLN00150 potassium ion transpo 100.0 2E-248 4E-253 2092.4 62.8 737 13-756 3-779 (779)
3 PLN00148 potassium transporter 100.0 2E-246 4E-251 2077.4 62.1 718 34-756 1-785 (785)
4 PLN00149 potassium transporter 100.0 4E-245 8E-250 2068.8 63.5 705 52-756 15-779 (779)
5 TIGR00794 kup potassium uptake 100.0 1E-231 2E-236 1946.5 59.3 686 60-756 1-688 (688)
6 PRK10745 trkD potassium transp 100.0 3E-216 6E-221 1798.0 54.7 609 59-756 11-622 (622)
7 COG3158 Kup K+ transporter [In 100.0 2E-203 4E-208 1658.7 47.3 610 57-756 15-627 (627)
8 PF02705 K_trans: K+ potassium 100.0 2E-199 3E-204 1650.2 44.8 532 61-634 1-534 (534)
9 TIGR00911 2A0308 L-type amino 93.5 0.36 7.8E-06 55.1 10.0 86 229-318 165-254 (501)
10 COG0531 PotE Amino acid transp 91.0 5.2 0.00011 44.3 14.9 186 228-418 133-331 (466)
11 TIGR00909 2A0306 amino acid tr 86.5 15 0.00031 41.0 14.4 211 230-458 134-359 (429)
12 PF13520 AA_permease_2: Amino 83.3 7.9 0.00017 42.8 10.4 247 205-466 91-366 (426)
13 TIGR03813 put_Glu_GABA_T putat 83.2 27 0.00059 39.8 14.9 58 300-357 195-254 (474)
14 TIGR00907 2A0304 amino acid pe 82.5 6.8 0.00015 44.5 9.8 24 510-533 454-477 (482)
15 PRK10435 cadB lysine/cadaverin 81.2 83 0.0018 35.5 17.7 23 232-254 124-146 (435)
16 PRK10655 potE putrescine trans 80.2 43 0.00094 37.6 15.0 94 231-333 125-225 (438)
17 PRK15049 L-asparagine permease 77.7 39 0.00084 39.2 13.9 23 231-253 146-168 (499)
18 TIGR03810 arg_ornith_anti argi 74.8 1.3E+02 0.0028 34.3 17.0 45 367-411 273-317 (468)
19 TIGR00906 2A0303 cationic amin 73.5 1.3E+02 0.0027 35.7 16.8 45 229-273 161-208 (557)
20 TIGR00930 2a30 K-Cl cotranspor 68.9 73 0.0016 40.4 14.2 25 229-253 203-227 (953)
21 PRK10249 phenylalanine transpo 68.8 78 0.0017 36.1 13.4 102 232-335 138-247 (458)
22 PRK10746 putative transport pr 65.3 1.8E+02 0.0038 33.4 15.4 29 52-86 12-40 (461)
23 TIGR00908 2A0305 ethanolamine 64.4 1.2E+02 0.0026 34.1 13.7 24 231-254 123-146 (442)
24 PRK11021 putative transporter; 60.9 2.8E+02 0.006 31.0 17.1 98 229-336 115-216 (410)
25 PRK11387 S-methylmethionine tr 59.5 1.6E+02 0.0034 33.7 13.6 28 52-85 16-43 (471)
26 TIGR00905 2A0302 transporter, 55.4 2.7E+02 0.0059 31.8 14.7 43 368-410 278-320 (473)
27 PRK10644 arginine:agmatin anti 55.0 95 0.0021 35.1 10.9 23 231-253 127-149 (445)
28 TIGR00910 2A0307_GadC glutamat 52.8 2.7E+02 0.0058 32.5 14.2 57 301-357 196-254 (507)
29 PRK11357 frlA putative fructos 52.7 1.2E+02 0.0026 34.3 11.1 100 230-336 128-234 (445)
30 PF14362 DUF4407: Domain of un 51.9 1.4E+02 0.0031 32.2 11.2 54 450-503 14-71 (301)
31 TIGR03428 ureacarb_perm permea 50.7 3.8E+02 0.0082 30.7 14.9 25 229-253 144-168 (475)
32 PRK11049 D-alanine/D-serine/gl 50.4 3.8E+02 0.0083 30.7 14.8 108 302-410 214-332 (469)
33 PRK10580 proY putative proline 50.0 2.2E+02 0.0048 32.3 12.8 99 233-335 127-237 (457)
34 TIGR00913 2A0310 amino acid pe 46.5 1.3E+02 0.0028 34.2 10.3 22 511-532 443-464 (478)
35 PRK10238 aromatic amino acid t 46.4 3.6E+02 0.0078 30.8 13.8 114 232-349 129-251 (456)
36 COG4059 MtrE Tetrahydromethano 42.3 22 0.00049 37.8 3.1 29 507-535 259-287 (304)
37 PF06570 DUF1129: Protein of u 34.7 1.6E+02 0.0034 30.4 7.9 21 509-529 179-199 (206)
38 KOG3643 GABA receptor [Signal 34.3 25 0.00055 40.7 2.2 90 404-497 225-324 (459)
39 PF00324 AA_permease: Amino ac 33.7 29 0.00063 39.5 2.6 37 300-336 201-239 (478)
40 PF05297 Herpes_LMP1: Herpesvi 30.0 17 0.00038 40.0 0.0 62 471-535 124-190 (381)
41 KOG3145 Cystine transporter Cy 27.7 33 0.00071 38.1 1.6 87 230-330 234-339 (372)
42 KOG4742 Predicted chitinase [G 24.3 34 0.00073 37.6 0.9 37 321-363 171-210 (286)
43 PRK11492 hyfE hydrogenase 4 me 23.8 8.7E+02 0.019 25.7 11.1 128 407-550 79-213 (216)
44 cd05900 Ig_Aggrecan Immunoglob 22.5 1E+02 0.0022 28.9 3.7 29 609-637 74-102 (112)
45 PF11086 DUF2878: Protein of u 22.2 4.8E+02 0.01 26.1 8.4 82 450-535 19-100 (152)
46 PF05545 FixQ: Cbb3-type cytoc 21.5 86 0.0019 25.3 2.6 29 518-546 19-47 (49)
47 smart00408 IGc2 Immunoglobulin 20.7 1.1E+02 0.0024 23.0 2.9 25 607-631 37-61 (63)
48 TIGR01773 GABAperm gamma-amino 20.6 1.3E+03 0.027 26.2 16.6 101 231-334 128-238 (452)
49 PF13937 DUF4212: Domain of un 20.2 4.6E+02 0.0099 23.9 7.1 38 497-535 30-73 (81)
No 1
>PLN00151 potassium transporter; Provisional
Probab=100.00 E-value=2.2e-254 Score=2141.08 Aligned_cols=730 Identities=47% Similarity=0.867 Sum_probs=693.2
Q ss_pred CCCCCCCCcccccCCcCCccccccccchHHHHHHHHHhhcceeecccccchhHHhhhcCCC-CCCCccceehhhHHHHHH
Q 004397 26 LLPQRYDSLDLESGAVSGYHRRSSKAMKWSVILQLAFQSIGIVYGDIGTSPLYVFSSTFPN-GINHADDVLGVLSLILYT 104 (756)
Q Consensus 26 ~~~~~~ds~~~~a~~~~~~~~~~~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~-~~~~~~dvlGvLSLIfWt 104 (756)
..++|+||||.|++++++.++|+.|+.++|+++.|||||+|||||||||||||||+++|++ +++++|||+|+|||||||
T Consensus 71 ~~~~~~d~~~~e~~~~~~~~~~~~~~~~~w~~l~La~qslGVVyGDIGTSPLYv~~s~F~~~~~~~~~dIlGvLSLIfWt 150 (852)
T PLN00151 71 RTPPRVDSFDVEAMEIPGAHRHDSEDLSVGRTLALAFQTLGVVFGDVGTSPLYTFSVMFSKVPIKSEEDVLGALSLVLYT 150 (852)
T ss_pred hCCCccchhhhcccccccccccccccccHHHHHHHHHhhhceEeCcCCCCHHHHHHHHhcCCCCCChhheeeehHHHHHH
Confidence 3469999999999999888877655577888899999999999999999999999999976 456999999999999999
Q ss_pred HHHHhhhheeeEEEeecCCCCChHHHHHHHHhhhcccCCCCCCCccccccccccccCCCccccccchhhHhhhhhhhhhH
Q 004397 105 LTLIPLIKYVFIVLHANDNGDGGTFALYSLICRYANVGLVPSQQAEDSNVSNFQLELPGNKRSRMASSLKSKLENSRVAK 184 (756)
Q Consensus 105 L~liv~iKYv~ivL~Adn~GEGG~fALysLi~r~~~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~~~~k~~le~~~~~~ 184 (756)
|||||++|||+|||||||||||||||||||+|||+|++++||||++|+++|+|+++.| +++.+|+.|+|++||+|+++|
T Consensus 151 LtLiv~iKYV~iVLrAdd~GEGGtfALySLl~R~a~~~llpnq~~~de~ls~~~~~~~-~~~~~~~~~~k~~lE~s~~~k 229 (852)
T PLN00151 151 LILIPLAKYVLVVLWANDDGEGGTFALYSLICRHAKVSLLPNQLPSDERISSFRLKLP-TPELERSLKIKERLETSSLLK 229 (852)
T ss_pred HHHHHHHhheeEEEEecCCCCchHHHHHHHHHHhcCcCccccccchHhhhhhhcccCC-ccccchhHHHHHHhhhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988 567888999999999999999
Q ss_pred HHHHHHHHhhhhhhhcCcccccchhhhhhhcccccccCCCCCCeeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHH
Q 004397 185 FFLFFATLLGTSMLIGDGVLTPCISVLSAVGGIKEATSAMTEDRVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFA 264 (756)
Q Consensus 185 ~~l~~l~llG~am~~GDGviTPAISVLSAVeGL~v~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~ 264 (756)
.++++++++||||+||||+|||||||||||||||++.|++++++||||||+||++||++|||||+|||++|||||++||+
T Consensus 230 ~~ll~l~l~GtamviGDGvlTPAISVLSAVeGL~v~~p~l~~~~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl 309 (852)
T PLN00151 230 KLLLLLVLAGTSMVIGDGVLTPAMSVMSAVSGLKVGVPGFGQDAVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFC 309 (852)
T ss_pred HHHHHHHHHhHHHHhcccccccchhhhhhhccccccCCcCCCCeehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhHhhcccCcceeeecChHHHHHHHhhcchhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHH
Q 004397 265 FIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALIL 344 (756)
Q Consensus 265 ~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL 344 (756)
+||++|+|||++|||+||+||||+|+++||+|||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|
T Consensus 310 ~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaEALfADLGHFg~~sIqiaw~~~V~P~LlL 389 (852)
T PLN00151 310 SLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKAWSALGGCVLCATGSEAMFADLGYFSVRSIQLAFTCLVLPCLLL 389 (852)
T ss_pred HHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCceEEEecceeeeeccchhhhcccCCCCccceeeeehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccchhhhccCCCcccCcccccccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCce
Q 004397 345 AYTGQASFLRKHPDLVSNTFFKSVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQV 424 (756)
Q Consensus 345 ~Y~GQgA~Ll~~p~~~~npFy~siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQI 424 (756)
||+||||||++||++++||||+++|+|++||+|++||+||||||||||||+||+++||++||||||+||+|||++++|||
T Consensus 390 ~Y~GQaA~L~~~p~~~~npFy~svP~~~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQI 469 (852)
T PLN00151 390 AYMGQAAYLMKNPDSAEQIFFSSVPSSLFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQI 469 (852)
T ss_pred HHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eechhHHHHHHHhheeEEeecCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhh
Q 004397 425 YVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLY 504 (756)
Q Consensus 425 YIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~ 504 (756)
|||+|||+||++|+++|++||||++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.
T Consensus 470 YIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sA~l~ 549 (852)
T PLN00151 470 YIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAEVGVMMVSTILVTLVMLLIWQTNIFLVLCFPVVFLSVELVFFSSVLS 549 (852)
T ss_pred eeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHHhhhhHhHHHHHHHHHHHHhcCCChHHHHHHhhcCCCcccceeEEEEecCCCCchhhHHHhhhh
Q 004397 505 KFDQGGYLPLIFAAVLMTIMYVWNNVYRRKYFYEVEHKLSPRRINDIAANTNICRIPGLALFYSELVQGIPPIFKHYVEN 584 (756)
Q Consensus 505 K~~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~~~gvP~~f~h~l~~ 584 (756)
||+||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++++|+|++|.||++|
T Consensus 550 Ki~~GGW~Pl~la~v~~~iM~~W~yG~~~~~~~~~~~~vs~~~~~~L~~~~~~~RVpGiglf~t~~~~gvP~~f~h~i~~ 629 (852)
T PLN00151 550 SVGDGGWIPLVFASVFLCIMYIWNYGSKLKYQSEVRQKLSMDLMRELGSNLGTIRAPGIGLLYNELVKGIPAIFGHFLTT 629 (852)
T ss_pred hhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred ccccceeEEEEEEeeecccccCCCceEEEEEecCCCCCEEEEEEEeecccCCC-CchhHHHHHHHHHHHHHhhccCCC--
Q 004397 585 VPALHSVLVFVSIKSLPISKVPADERFIFRRVEPKELNMYRCVGRYGYMDVRD-QEEPFERILVENLKQFIRDDYKFS-- 661 (756)
Q Consensus 585 ~~~lH~~vvfv~ik~~pvP~V~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~~~-~~~~f~~~l~~~l~~fi~~e~~~~-- 661 (756)
||++||++||||||++|+|+||++|||+++|++||++++|||++||||||.++ ++++||+.++++|++|||.|+...
T Consensus 630 ~~alHe~~Vfv~ik~~~vP~V~~~eR~lv~ri~~~~~~~yr~vvrYGY~D~~~~~~~dFe~~Lv~~l~~fi~~e~~~~~~ 709 (852)
T PLN00151 630 LPAIHSTIIFVCIKYVPVPVVPQEERFLFRRVCPKDYHMFRCIARYGYKDVRKENHQAFEQLLIESLEKFIRREAQERAL 709 (852)
T ss_pred CCcccceEEEEEEEECcccccChhheEEEEEcCCCCCCEEEEEEEEeecccccccchHHHHHHHHHHHHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999986 789999999999999999876321
Q ss_pred -CCCcCcC-CC-----------------C-C--------cc--ccc------------------ccchhhHHHHHHHHHH
Q 004397 662 -PQSQESA-HD-----------------S-D--------ED--TIH------------------GVQKEALERDIEAVDK 693 (756)
Q Consensus 662 -~~~~~~~-~~-----------------~-~--------~~--~~~------------------~~~~~~~~~e~~~l~~ 693 (756)
+..++++ ++ + + +. +.. ++.++++++|++++++
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El~~l~~ 789 (852)
T PLN00151 710 ESDGNDDTDDEDSVTSSRVLIAPNGSVYSLGVPLLADYRLTSKPIPEASTSEEVSPVLPSSSMSSDEDQSLEYELSFIRE 789 (852)
T ss_pred cccccccccccccccccccccCCCcccccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHH
Confidence 1000000 00 0 0 00 000 1123468999999999
Q ss_pred HHHcCceEEeecceEEeccCCCccHHHHHHHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 694 AWEAGAVHLIGENEVVAAEGAGIGKRLMINYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 694 a~~~~~~y~lg~~~v~a~~~s~~~kk~~~~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
|+|+|++|++||+++++|++|+++||+++|++|+|||||||++...++|||+|++||||+|+|
T Consensus 790 a~e~Gv~yilG~~~v~a~~~S~~~Kk~~in~~Y~fLRkN~R~~~~~L~iP~~~lleVGm~Y~v 852 (852)
T PLN00151 790 AKESGVVYLLGHGDVRARKNSWFIKKLVINYFYAFLRKNCRRGIANLSVPHSNIMQVGMTYMV 852 (852)
T ss_pred HHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999996
No 2
>PLN00150 potassium ion transporter family protein; Provisional
Probab=100.00 E-value=2e-248 Score=2092.38 Aligned_cols=737 Identities=48% Similarity=0.875 Sum_probs=696.2
Q ss_pred eeccccccccCCCCCCCCCCC-cccccCCcCCccccccccchHHHHHHHHHhhcceeecccccchhHHhhhcCCC-CCCC
Q 004397 13 QVALSQDNLKGNKLLPQRYDS-LDLESGAVSGYHRRSSKAMKWSVILQLAFQSIGIVYGDIGTSPLYVFSSTFPN-GINH 90 (756)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~ds-~~~~a~~~~~~~~~~~~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~-~~~~ 90 (756)
|-..||.|+.--|..++|.|+ +|+|++++.++++. |+.+|+.++.|||||+|||||||||||||||+++|++ +.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~ 80 (779)
T PLN00150 3 TTMISESNQGRLWDLDQRITRPLGVDADSVRSMYFS--SPNWPKVIMHLAYQSLGVVYGDLGTSPLYVFKSTFANVGVKN 80 (779)
T ss_pred eEEecCCCccchhhCCCCCCCccCcchhhccccccc--ccccHHHHHHHHHhccCeEeCcCccchHHHHHHHhcCCCCCC
Confidence 445688888888999999999 99999999998653 3489999999999999999999999999999999976 4679
Q ss_pred ccceehhhHHHHHHHHHHhhhheeeEEEeecCCCCChHHHHHHHHhhhcccCCCCCCCccccccccccccCCCccccccc
Q 004397 91 ADDVLGVLSLILYTLTLIPLIKYVFIVLHANDNGDGGTFALYSLICRYANVGLVPSQQAEDSNVSNFQLELPGNKRSRMA 170 (756)
Q Consensus 91 ~~dvlGvLSLIfWtL~liv~iKYv~ivL~Adn~GEGG~fALysLi~r~~~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~ 170 (756)
+|||+|+|||||||||||+++|||+|||||||||||||||||||+|||+|++++|||+++|+++++|+++. ..|.
T Consensus 81 ~~~ilGvLSLIfWtLtLiv~iKYV~ivLrAdn~GEGGtfALysLl~r~aki~l~~~~~~~~~~~s~~~~~~-----~~r~ 155 (779)
T PLN00150 81 NDDIIGALSLIIYTLTIIPLIKYVFIVLRANDNGEGGSFALYSLLCRYCNISLLPNQHPTDVELTTYVVDN-----MNRK 155 (779)
T ss_pred HHHhHhHHHHHHHHHHHHHHHhheeEEEEccCCCCcchhhHHHHHhhhcccccCCccccchhhhhhccccc-----chhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998632 3445
Q ss_pred hhhHhhhhhhhhhHHHHHHHHHhhhhhhhcCcccccchhhhhhhcccccccCCCCCCeeehhHHHHHHHHHHHhhhcccc
Q 004397 171 SSLKSKLENSRVAKFFLFFATLLGTSMLIGDGVLTPCISVLSAVGGIKEATSAMTEDRVVWISAAILVCLFLFQRLGTDK 250 (756)
Q Consensus 171 ~~~k~~le~~~~~~~~l~~l~llG~am~~GDGviTPAISVLSAVeGL~v~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~k 250 (756)
.++|++||+|+..|.+++++|++|+||+||||+||||||||||||||++..|++++++||||||+||++||++||+||+|
T Consensus 156 ~~~k~~lE~~~~~~~~l~~l~l~G~~m~~gDgviTPAISVLSAVeGL~v~~p~l~~~~Vv~is~~ILv~LF~iQ~~GT~k 235 (779)
T PLN00150 156 TRIQRKLENSRVWQNVLLLIVLLGTCMVIGDGILTPSISVLSAVVGIKAASSGLDTNLVTIISCVILVILFSLQRFGTHK 235 (779)
T ss_pred hHHHHhhhcchHHHHHHHHHHHHHHHHHhcccccccchhhhhhhccccccCCCCCCCeehhhHHHHHHHHHHHHhccchh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcchhHHHHhhhhhhhhcccccccccCCCCcccce
Q 004397 251 VGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQAAWISLGGIILCTTGAEALFADVGHFTVLSI 330 (756)
Q Consensus 251 Vg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~I 330 (756)
||++|||||++||++||++|+|||++|||+||+|+||+|+++||++||++||.+||||+||+||+|||||||||||++||
T Consensus 236 Vg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LG~V~L~iTGaEALyADlGHFg~~~I 315 (779)
T PLN00150 236 VSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQGWESLGGIVLCMTGTEAMFADLGHFTVKSM 315 (779)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCceEEEecceeeeecchhhhhccccCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeehhhHHHHHHHhhccchhhhccCCCcccCcccccccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCc
Q 004397 331 RISTCGVVYPALILAYTGQASFLRKHPDLVSNTFFKSVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPH 410 (756)
Q Consensus 331 q~aw~~~V~PaLlL~Y~GQgA~Ll~~p~~~~npFy~siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr 410 (756)
|+||+++|||||+|||+||||||++||++++||||+++|+|++||+|++||+||||||||||||+||+++||++||||||
T Consensus 316 riaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPr 395 (779)
T PLN00150 316 QIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYRSLPKPIYWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFPR 395 (779)
T ss_pred eeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHH
Q 004397 411 VKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLI 490 (756)
Q Consensus 411 ~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~ 490 (756)
+||+|||++++||||||+|||+||++|+++|++||||++||||||+||++||++||+|+++||+.+||||++++++|+++
T Consensus 396 vkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~vM~iTT~L~~~v~~~~W~~~~~~~~~f~~~ 475 (779)
T PLN00150 396 VKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAVVGVMIITTCLMTLVMIIIWRKHILLALLFFTV 475 (779)
T ss_pred ceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhheehhhHHHHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhHhHHHHHHHHHHHHhcCCChHHHHHHhhcCCCcccceeEEEEecC
Q 004397 491 IGSVELIYLSSVLYKFDQGGYLPLIFAAVLMTIMYVWNNVYRRKYFYEVEHKLSPRRINDIAANTNICRIPGLALFYSEL 570 (756)
Q Consensus 491 F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~ 570 (756)
|+++|++|||||+.||+||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++
T Consensus 476 f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~ 555 (779)
T PLN00150 476 FAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTWHYGTRKRYLYEMQHKVSVGWLLGLGPSLGLVRVPGIGLMYTDL 555 (779)
T ss_pred HHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHhhcccCCCcccCcEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999998888877788999999999999
Q ss_pred CCCchhhHHHhhhhccccceeEEEEEEeeecccccCCCceEEEEEecCCCCCEEEEEEEeecccCCCCchhHHHHHHHHH
Q 004397 571 VQGIPPIFKHYVENVPALHSVLVFVSIKSLPISKVPADERFIFRRVEPKELNMYRCVGRYGYMDVRDQEEPFERILVENL 650 (756)
Q Consensus 571 ~~gvP~~f~h~l~~~~~lH~~vvfv~ik~~pvP~V~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~~~~~~~f~~~l~~~l 650 (756)
++|+|++|.||++|||++||++||+|||++|+|+||++||++++|++++++++|||++||||||..+++++||+.++++|
T Consensus 556 ~~gvP~~f~h~v~~~~~lhe~~Vfl~i~~~~vP~V~~~eR~~v~~i~~~~~r~~r~vvryGy~d~~~d~~dFE~~LvesL 635 (779)
T PLN00150 556 AHGVPPLFSHFITNLPAIHSTVVFVCIKYLPVNTVPQDERFLIRRIGPRAYSMYRCAARYGYTDLEKKDDNFEQLLIASL 635 (779)
T ss_pred CCCCCHHHHHHHHhCCcccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcCcccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred HHHHhhccCCCCCCcC--------cCC----C-------CC-c------ccc------------cccchhhHHHHHHHHH
Q 004397 651 KQFIRDDYKFSPQSQE--------SAH----D-------SD-E------DTI------------HGVQKEALERDIEAVD 692 (756)
Q Consensus 651 ~~fi~~e~~~~~~~~~--------~~~----~-------~~-~------~~~------------~~~~~~~~~~e~~~l~ 692 (756)
++|||.|+.....+++ +++ + ++ + ++. .++.+++++||+++++
T Consensus 636 ~~FIr~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~ 715 (779)
T PLN00150 636 ERFIEIESFREQSDLESMAASWTPEELMGEGNSVGSGLFTQYDQSDINFATSQEWKRPSSQEDSVSGHSSDTQDEVAFLN 715 (779)
T ss_pred HHHHHhhhhcccccccccccccccccccccCCcccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence 9999987531100000 000 0 00 0 000 0112357899999999
Q ss_pred HHHHcCceEEeecceEEeccCCCccHHHHHHHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 693 KAWEAGAVHLIGENEVVAAEGAGIGKRLMINYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 693 ~a~~~~~~y~lg~~~v~a~~~s~~~kk~~~~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
+|+|+|++|++||+++++|++|+++||+++|++|+|||||||++...++|||+|++||||+|+|
T Consensus 716 ~A~eaGVvYIlG~~~v~Ak~~Ss~~KK~vIN~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~V 779 (779)
T PLN00150 716 KCKEAGVVYILGNNDVKARKDSGFFKKVIINYIYTFLRRISRDSEVVLNIPHECLLKVGMVYYV 779 (779)
T ss_pred HHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCCccccCCChHHeEEeceEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999997
No 3
>PLN00148 potassium transporter; Provisional
Probab=100.00 E-value=1.8e-246 Score=2077.43 Aligned_cols=718 Identities=44% Similarity=0.840 Sum_probs=673.2
Q ss_pred cccccCCcCCccccccccchHHH---HHHHHHhhcceeecccccchhHHhhhcCCCC---CCCccceehhhHHHHHHHHH
Q 004397 34 LDLESGAVSGYHRRSSKAMKWSV---ILQLAFQSIGIVYGDIGTSPLYVFSSTFPNG---INHADDVLGVLSLILYTLTL 107 (756)
Q Consensus 34 ~~~~a~~~~~~~~~~~~~~~~~~---~l~La~~alGVVyGDIGTSPLYv~~~~F~~~---~~~~~dvlGvLSLIfWtL~l 107 (756)
||.|++..+.+ +.++ .+|+. ++.|||||+|||||||||||||||+++|+++ .+++|||+|+||||||||||
T Consensus 1 ~~~~~~~~~~~--~~~~-~~w~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~~~~~~~~~~~ilGvLSLIfWtLtL 77 (785)
T PLN00148 1 MEAESGVSPSR--NPSQ-LSWVNLSRNLLLAYQSFGVVYGDLSTSPLYVYKSTFSGKLQKHQNEETIFGAFSLIFWTFTL 77 (785)
T ss_pred CCcccCCCCCC--CCCc-chhhHHhHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHHHhHHHHHHHHHHH
Confidence 45666643322 2233 57777 8999999999999999999999999999753 25899999999999999999
Q ss_pred HhhhheeeEEEeecCCCCChHHHHHHHHhhhcccCCCCCCCccccccccccccCCCccccccchhhHhhhhhhhhhHHHH
Q 004397 108 IPLIKYVFIVLHANDNGDGGTFALYSLICRYANVGLVPSQQAEDSNVSNFQLELPGNKRSRMASSLKSKLENSRVAKFFL 187 (756)
Q Consensus 108 iv~iKYv~ivL~Adn~GEGG~fALysLi~r~~~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~l 187 (756)
|+++|||+|||||||||||||||||||+|||+|++++||||++|+++++|+.+.+ ...+++.++|++||+|++.|.++
T Consensus 78 iv~iKYV~ivlrAdn~GEGG~fALysLl~r~~~~~~~pn~~~~d~~ls~~~~~~~--~~~~~~~~~k~~lE~~~~~~~~l 155 (785)
T PLN00148 78 IPLLKYVTILLSADDNGEGGTFALYSLLCRHAKLSLLPNQQAADEELSAYKYGPS--TQTVGSSPLKRFLEKHKRLRTAL 155 (785)
T ss_pred HHHHhheEEEEEecCCCCchHHHHHHHHHHhcccccCccchhhhhhhhhhccCcc--ccchhhhHHHHHhhhchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988665 33466788999999999999999
Q ss_pred HHHHHhhhhhhhcCcccccchhhhhhhcccccccCCCCCCeeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHH
Q 004397 188 FFATLLGTSMLIGDGVLTPCISVLSAVGGIKEATSAMTEDRVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIA 267 (756)
Q Consensus 188 ~~l~llG~am~~GDGviTPAISVLSAVeGL~v~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~ 267 (756)
+++|++|+||+||||+|||||||||||||||+++|++++++||||||+||++||++||+||+|||++|||||++||++||
T Consensus 156 l~l~l~G~am~~gDgvlTPAISVLSAVeGl~v~~p~~~~~~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~ 235 (785)
T PLN00148 156 LLVVLFGACMVIGDGVLTPAISVLSSVSGLQVTETKLTDGELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIG 235 (785)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHhccceecCCCCCCCeehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhHhhcccCcceeeecChHHHHHHHhhcchhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhc
Q 004397 268 GIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYT 347 (756)
Q Consensus 268 ~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~ 347 (756)
++|+|||++|||+||+||||+|+++||++||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+
T Consensus 236 ~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g~~~LGgV~L~iTGaEALyADlGHFg~~~Iriaw~~~V~P~L~L~Y~ 315 (785)
T PLN00148 236 SIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDGWISLGGILLSITGTEAMFADLGHFTAASIRLAFATVIYPCLVVQYM 315 (785)
T ss_pred HHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCceEEeecchheeccchhhhhhhccCCCccceEEeeeehHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCcccCcccccccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeec
Q 004397 348 GQASFLRKHPDLVSNTFFKSVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVP 427 (756)
Q Consensus 348 GQgA~Ll~~p~~~~npFy~siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP 427 (756)
||||||++||++++||||+++|+|++||+|++||+||||||||||||+||+++||++||||||+||+|||++++||||||
T Consensus 316 GQaA~ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP 395 (785)
T PLN00148 316 GQAAFLSKNIPSIPNSFYDSIPDPVFWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIP 395 (785)
T ss_pred chHHHHhcCcccccCcHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhheeEEeecCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhccc
Q 004397 428 EVNYLLMLACIGVTMGFRTTVKIGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFD 507 (756)
Q Consensus 428 ~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~ 507 (756)
+|||+||++|+++|++||||++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.||+
T Consensus 396 ~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV~~vM~iTT~L~~lV~~~~W~~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~ 475 (785)
T PLN00148 396 EINWILMILTLAVTIGFRDTTLIGNAYGLACMTVMFITTFLMALVIIFVWQKSIILAALFLLFFGFIEGVYLSAALMKVP 475 (785)
T ss_pred HHHHHHHHHHHHhheeeccchhHHHhhhhheeeHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhhhHhHHHHHHHHHHHHhcCCChHHHHHHhhcCCCcccceeEEEEecCCCCchhhHHHhhhhccc
Q 004397 508 QGGYLPLIFAAVLMTIMYVWNNVYRRKYFYEVEHKLSPRRINDIAANTNICRIPGLALFYSELVQGIPPIFKHYVENVPA 587 (756)
Q Consensus 508 ~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~~~gvP~~f~h~l~~~~~ 587 (756)
||||+||++|++++++|++||||++++|+++.+|++|++++.++.++.++.||||+|+|||++++|+|++|.||++|||+
T Consensus 476 ~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~RVpG~~vf~t~~~~gvP~~f~h~~~~~~~ 555 (785)
T PLN00148 476 QGGWVPLVLSAIFMSIMYIWHYGTRKKYNFDLHNKVSLKWLLGLGPSLGIVRVPGIGLIYSELATGVPAIFSHFVTNLPA 555 (785)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHhcccCCCcccCcEEEEecCCCCCCCHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999888888778899999999999999999999999999999
Q ss_pred cceeEEEEEEeeecccccCCCceEEEEEecCCCCCEEEEEEEeecccCCCCchhHHHHHHHHHHHHHhhccCCCC-----
Q 004397 588 LHSVLVFVSIKSLPISKVPADERFIFRRVEPKELNMYRCVGRYGYMDVRDQEEPFERILVENLKQFIRDDYKFSP----- 662 (756)
Q Consensus 588 lH~~vvfv~ik~~pvP~V~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~~~~~~~f~~~l~~~l~~fi~~e~~~~~----- 662 (756)
+||++||||||++|+|+||++||++++|++++++|+|||++||||||.++++++||+.++++|++|||.|+..++
T Consensus 556 lHe~~Vfv~ik~~~vP~V~~~eR~~v~~i~~~~yr~~r~vvryGy~d~~~~~~dFe~~Lv~~L~~FIr~e~~~~~~~~~~ 635 (785)
T PLN00148 556 FHKVLVFVCVKSVPVPYVSPEERFLIGRVCPRPYRMYRCIVRYGYKDIQRDDGDFENMLVQSIAEFIQMEAEEPQSSASE 635 (785)
T ss_pred ccceEEEEEEEECcccccChhheEEEEEecCCCceEEEEEEEEccCcccccchHHHHHHHHHHHHHHHhhhhcccccccc
Confidence 999999999999999999999999999999999999999999999999989999999999999999998763210
Q ss_pred -CCcCc-------CC-----------C---------CCcc--cc---c--------------------c---cchhhHHH
Q 004397 663 -QSQES-------AH-----------D---------SDED--TI---H--------------------G---VQKEALER 686 (756)
Q Consensus 663 -~~~~~-------~~-----------~---------~~~~--~~---~--------------------~---~~~~~~~~ 686 (756)
.+.++ ++ + .+.+ ++ + + +.+++++|
T Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (785)
T PLN00148 636 SSSNDGRMAVISTRDVQSSSLLMVSEQELADIDDSIQSSKSLTLQSLQSAYEDENPGQSRRRRVRFQLPENPGMDPSVRE 715 (785)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeecccccccccchHHH
Confidence 00000 00 0 0000 00 0 0 12356899
Q ss_pred HHHHHHHHHHcCceEEeecceEEeccCCCccHHHHHHHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 687 DIEAVDKAWEAGAVHLIGENEVVAAEGAGIGKRLMINYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 687 e~~~l~~a~~~~~~y~lg~~~v~a~~~s~~~kk~~~~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
|+++|++|+|+|++|++||+++++|++|+++||+++|++|+|||||||++...++|||+|++||||+|+|
T Consensus 716 El~~L~~A~eaGVvYIlG~s~v~Ar~~Ss~~KKivIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGM~Y~V 785 (785)
T PLN00148 716 ELMDLIEAKEAGVAYIMGHSYVKARRSSSFLKKLAIDIGYSFLRKNCRGPAVALNIPHISLIEVGMIYYV 785 (785)
T ss_pred HHHHHHHHHHcCcEEEeccceEEEcCCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEcceEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996
No 4
>PLN00149 potassium transporter; Provisional
Probab=100.00 E-value=3.5e-245 Score=2068.77 Aligned_cols=705 Identities=44% Similarity=0.847 Sum_probs=662.3
Q ss_pred chHHHHHHHHHhhcceeecccccchhHHhhhcCCCC---CCCccceehhhHHHHHHHHHHhhhheeeEEEeecCCCCChH
Q 004397 52 MKWSVILQLAFQSIGIVYGDIGTSPLYVFSSTFPNG---INHADDVLGVLSLILYTLTLIPLIKYVFIVLHANDNGDGGT 128 (756)
Q Consensus 52 ~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~~---~~~~~dvlGvLSLIfWtL~liv~iKYv~ivL~Adn~GEGG~ 128 (756)
.+|+.++.|||||+|||||||||||||||+++|.++ .+++|||+|+||||||||||||++|||+|||||||||||||
T Consensus 15 ~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~f~~~~~~~~~~~~ilGvLSLIfWtL~Liv~iKYv~ivlrAdn~GEGGt 94 (779)
T PLN00149 15 ESWRTVLTLAYQSLGVVYGDLSTSPLYVYKSTFAEDIQHSETNEEIFGVLSFVFWTLTLIPLLKYVFIVLRADDNGEGGT 94 (779)
T ss_pred ccHHHHHHHHHhcccEEeCcccccHHHHHHHHhcCCCCCCCCHHHhhhHHHHHHHHHHHHHhhhhEEEEEEecCCCCchH
Confidence 789999999999999999999999999999999653 25899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccCCCCCCCccccccccccccCCC--ccccccchhhHhhhhhhhhhHHHHHHHHHhhhhhhhcCccccc
Q 004397 129 FALYSLICRYANVGLVPSQQAEDSNVSNFQLELPG--NKRSRMASSLKSKLENSRVAKFFLFFATLLGTSMLIGDGVLTP 206 (756)
Q Consensus 129 fALysLi~r~~~~~~ipn~~~~d~~~s~~~~~~~~--~~~~~~~~~~k~~le~~~~~~~~l~~l~llG~am~~GDGviTP 206 (756)
||||||+|||+|++++||||++|+++++|+++.|+ .++.+++.++|++||+|+..|+++++++++|+||+||||+|||
T Consensus 95 fALysLl~r~~~~~l~pn~~~~d~~ls~~~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~ll~l~l~G~~m~igDgvlTP 174 (779)
T PLN00149 95 FALYSLLCRHARVNSLPNCQLADEELSEYKKDSGSSSMPLSGFGSSLKSTLEKHRVLQRFLLVLALIGTCMVIGDGVLTP 174 (779)
T ss_pred HHHHHHHHHhccccCCccccchhhhhhhhhccccccccccchhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999887652 2223456889999999999999999999999999999999999
Q ss_pred chhhhhhhcccccccCCCCCCee-ehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhcccCcceeeec
Q 004397 207 CISVLSAVGGIKEATSAMTEDRV-VWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKAL 285 (756)
Q Consensus 207 AISVLSAVeGL~v~~p~l~~~~V-v~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~Al 285 (756)
|||||||||||+++.|...++++ |||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+||
T Consensus 175 AISVLSAVeGl~v~~~~~~~~~vvv~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~Al 254 (779)
T PLN00149 175 AISVFSAVSGLELSMSKEHHKYVEVPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQAL 254 (779)
T ss_pred hHHHHHHhhcccccCCCccCCceehHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhc
Confidence 99999999999999966445455 99999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcchhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCCC---cccC
Q 004397 286 NPRYIVDYFRNNQQAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHPD---LVSN 362 (756)
Q Consensus 286 nP~ya~~ff~~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p~---~~~n 362 (756)
||+|+++||+|||++||.+||||+||+||+|||||||||||++|||+||+++|||||+|||+||||||++||+ +++|
T Consensus 255 nP~y~~~f~~~~~~~g~~~LGgV~L~iTG~EALyADlGHF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~ 334 (779)
T PLN00149 255 SPYYMYKFLKKTQRGGWMSLGGILLCITGSEAMFADLGHFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRI 334 (779)
T ss_pred CHHHHHHHHHHCCCceeEeecchhhcccchhhhhhcccCCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 5667
Q ss_pred cccccccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeechhHHHHHHHhheeEE
Q 004397 363 TFFKSVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTM 442 (756)
Q Consensus 363 pFy~siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~ 442 (756)
|||+++|+|++||+|++||+||||||||||||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|+
T Consensus 335 pFy~~iP~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~ 414 (779)
T PLN00149 335 GFYVSVPEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTV 414 (779)
T ss_pred cHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHh
Q 004397 443 GFRTTVKIGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFAAVLMT 522 (756)
Q Consensus 443 ~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~ 522 (756)
+||||++||||||+||++||++||+|+++||+.+||||++++++|+++|+++|++|||||+.||+||||+||++|+++++
T Consensus 415 ~F~~s~~l~~AYGiAV~~vM~iTT~L~~lv~~~~W~~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~ 494 (779)
T PLN00149 415 GFRDTKRLGNASGLAVITVMLVTTCLMSLVIVLCWHKSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLL 494 (779)
T ss_pred EecChHHHHHHhhhhhehHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHhcCCChHHHHHHhhcCCCcccceeEEEEecCCCCchhhHHHhhhhccccceeEEEEEEeeecc
Q 004397 523 IMYVWNNVYRRKYFYEVEHKLSPRRINDIAANTNICRIPGLALFYSELVQGIPPIFKHYVENVPALHSVLVFVSIKSLPI 602 (756)
Q Consensus 523 iM~~W~~G~~~~~~~~~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~~~gvP~~f~h~l~~~~~lH~~vvfv~ik~~pv 602 (756)
+|++||||++++|+++.++++|++++.++.++.++.||||+|+|||++.+|+|++|.||++|||++||++||||||++|+
T Consensus 495 iM~~W~~G~~~~~~~~~~~~v~~~~~~~l~~~~~~~RvpG~~vf~t~~~~gvP~~f~h~~~~~~~lhe~~Vfv~ik~~~v 574 (779)
T PLN00149 495 VMYVWHYGTLKRYEFDVQNKVSINWLLSLGPSLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVLVFLCIKSVPV 574 (779)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHhccCCCCcccCcEEEEEcCCCCCCCHHHHHHHHhCCcccceEEEEEEEECcc
Confidence 99999999999999999999999999888888878899999999999999999999999999999999999999999999
Q ss_pred cccCCCceEEEEEecCCCCCEEEEEEEeecccCCCCchhHHHHHHHHHHHHHhhccCCCC---CC---cCc---------
Q 004397 603 SKVPADERFIFRRVEPKELNMYRCVGRYGYMDVRDQEEPFERILVENLKQFIRDDYKFSP---QS---QES--------- 667 (756)
Q Consensus 603 P~V~~~eR~~v~~~~~~~~~~~r~v~ryGy~d~~~~~~~f~~~l~~~l~~fi~~e~~~~~---~~---~~~--------- 667 (756)
|+||++||++++|++++++|+|||++||||||..+++++||+.++++|++|||.|+.... +. +++
T Consensus 575 P~V~~~eR~~v~~i~~~~~~~~r~vvryGy~d~~~d~~dFE~~Lve~L~~FI~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (779)
T PLN00149 575 PHVRPEERFLVGRIGPKEYRLYRCIVRYGYRDVHKDDMEFEKDLVCSIAEFIRSEKPEPNGAPENEEGEDERMTVVGTCS 654 (779)
T ss_pred cccChhheEEEEEecCCCceEEEEEEEEeeccccccchHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999998752110 00 000
Q ss_pred ----------CCC----C-Cccccc---------------------ccchhhHHHHHHHHHHHHHcCceEEeecceEEec
Q 004397 668 ----------AHD----S-DEDTIH---------------------GVQKEALERDIEAVDKAWEAGAVHLIGENEVVAA 711 (756)
Q Consensus 668 ----------~~~----~-~~~~~~---------------------~~~~~~~~~e~~~l~~a~~~~~~y~lg~~~v~a~ 711 (756)
+++ . +..+.+ .+.+++++||++++++|+|+|++|++||+++++|
T Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eEl~~L~~A~eaGVvYIlG~s~v~Ar 734 (779)
T PLN00149 655 THLEGIQLREDDSDKQEPAGTSELREIRSPPVSRPKKRVRFVVPESPKIDRGAREELQELMEAREAGMAYILGHSYVRAK 734 (779)
T ss_pred ccccccccccccccccccccccccccccCccccCcccceeeccccccccchhHHHHHHHHHHHHHcCcEEEecCceEEEc
Confidence 000 0 000000 0123578999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 712 EGAGIGKRLMINYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 712 ~~s~~~kk~~~~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
++|+++||+++|++|+|||||||++...++|||+|++||||+|||
T Consensus 735 ~~Ss~~KK~vIn~~Y~FLRkNcR~~~~~L~IPh~~LleVGmvY~v 779 (779)
T PLN00149 735 QGSSMMKKLVINYGYDFLRRNSRGPRYALSVPHASTLEVGMVYHV 779 (779)
T ss_pred CCCcHHHHHHHHHHHHHHHHhccCcccccCCChHHeEEeceEEEC
Confidence 999999999999999999999999999999999999999999996
No 5
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=100.00 E-value=1.1e-231 Score=1946.53 Aligned_cols=686 Identities=45% Similarity=0.810 Sum_probs=651.0
Q ss_pred HHHhhcceeecccccchhHHhhhcCCCCCCCccceehhhHHHHHHHHHHhhhheeeEEEeecCCCCChHHHHHHHHhhhc
Q 004397 60 LAFQSIGIVYGDIGTSPLYVFSSTFPNGINHADDVLGVLSLILYTLTLIPLIKYVFIVLHANDNGDGGTFALYSLICRYA 139 (756)
Q Consensus 60 La~~alGVVyGDIGTSPLYv~~~~F~~~~~~~~dvlGvLSLIfWtL~liv~iKYv~ivL~Adn~GEGG~fALysLi~r~~ 139 (756)
|++||||||||||||||||||+++|.++.+++|||+|+||||||||||++++|||++||||||||||||||||||+||++
T Consensus 1 La~~alGvVyGDIGTSPLY~~~~~f~~~~~~~~~ilGvlSLIfWtL~livtiKYv~ivlrAdn~GEGGi~AL~sL~~r~~ 80 (688)
T TIGR00794 1 LAFQSLGVIYGDIGTSPLYVLSSTFSGGFPTERDIFGVLSLIFWLLTFIVSFKYIFIVLRADNNGEGGTFALYSLIGRYA 80 (688)
T ss_pred CcceeeeeEeCcCcCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhheeEEEEecCCCCchHHHHHHHHHHhc
Confidence 58999999999999999999999997655799999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccccccccccccCCCccccccchhhHhhhhhhhhhHHHHHHHHHhhhhhhhcCcccccchhhhhhhccccc
Q 004397 140 NVGLVPSQQAEDSNVSNFQLELPGNKRSRMASSLKSKLENSRVAKFFLFFATLLGTSMLIGDGVLTPCISVLSAVGGIKE 219 (756)
Q Consensus 140 ~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~l~~l~llG~am~~GDGviTPAISVLSAVeGL~v 219 (756)
|++.+|||+++|+++++|+.+.+ ++.+|..++|+++|++++.|++++++|++|+||+||||+||||||||||||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~~~~~~~l~~~~l~G~al~~gDgviTPAiSVLSAVeGl~v 158 (688)
T TIGR00794 81 KISARPVHQELDRAESSYSTKSP--NLLNKTTSLKTKLELSKFISKFLVIFGLLGGSMVMGDGVLTPAISVLSAVSGLEI 158 (688)
T ss_pred cccCCCcccchhhhhhhcccccc--cccchhhHHHHHhhhhHHHHHHHHHHHHHhHHHHhcccccccchhhhhhhccccc
Confidence 99999999999999999999887 3467778999999999888899999999999999999999999999999999999
Q ss_pred ccCCCCCCeeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcch
Q 004397 220 ATSAMTEDRVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQ 299 (756)
Q Consensus 220 ~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~ 299 (756)
+.|++++++|+||||+||++||++||+||+|||++|||||++||++||++|+|||++|||+||+|+||+|+++||.+||+
T Consensus 159 ~~p~~~~~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~ 238 (688)
T TIGR00794 159 VAPSLSDTWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGT 238 (688)
T ss_pred cCCCCCCCeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCCCcccCcccccccCCchHHHHHH
Q 004397 300 AAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHPDLVSNTFFKSVPGPVYWPMFVV 379 (756)
Q Consensus 300 ~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p~~~~npFy~siP~~~~wP~~vl 379 (756)
.||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++|+|++||++++
T Consensus 239 ~~~~~LG~V~L~iTGaEALyADmGHFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p~~vl 318 (688)
T TIGR00794 239 VGWVSLGGVVLSITGVEAMFADLGHFGKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSIPDWALWPLFII 318 (688)
T ss_pred ceeeeccchhheeccHhhhhcccCCCCcccceeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhhhhhhH
Q 004397 380 AVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAVV 459 (756)
Q Consensus 380 AtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~ 459 (756)
||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|+++|++||||++||+|||+||+
T Consensus 319 AtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaVt 398 (688)
T TIGR00794 319 ATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAVT 398 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Q 004397 460 FVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFAAVLMTIMYVWNNVYRRKYFYEV 539 (756)
Q Consensus 460 ~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~ 539 (756)
+||+|||+|+++||+.+||||++++++|+++|+.+|++||+||+.|++||||+||++|++++++|++|+|||+++++++.
T Consensus 399 ~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~G~~~~~~~~~ 478 (688)
T TIGR00794 399 GTFLVTTCLMTVVMTIVWKWNIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRYGRFRKLRRDH 478 (688)
T ss_pred hhhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChHHHHHHhhcCC-CcccceeEEEEecCCCCchhhHHHhhhhccccceeEEEEEEeeecccccCCCceEEEEEecC
Q 004397 540 EHKLSPRRINDIAANTN-ICRIPGLALFYSELVQGIPPIFKHYVENVPALHSVLVFVSIKSLPISKVPADERFIFRRVEP 618 (756)
Q Consensus 540 ~~~~s~~~~~~~~~~~~-~~RvpG~avf~t~~~~gvP~~f~h~l~~~~~lH~~vvfv~ik~~pvP~V~~~eR~~v~~~~~ 618 (756)
++++|++++++.+.+.. .+|+||+|+|||++++++|++|.||++|||++||++||+||+++|+|+||++||++++++++
T Consensus 479 ~~~~~~~~~~~~l~~~~~l~rvpG~avf~t~~~~~vP~~~~h~l~~~~~lhe~~vfltv~~~~~P~Vp~~eR~~v~~l~~ 558 (688)
T TIGR00794 479 EHRVSISALIASLQPKPGLVRVPGIGIYYSNLVNGIPAVFGHLVTKFPSIHEVFIFLSLRTLDAPTVHNEERVQISQVGP 558 (688)
T ss_pred hcCCCHHHHHHHHhhcCCCcccCCeEEEeeCCccCCCHHHHHHHHhCCccceEEEEEEEEECCCCcCCcceEEEEEEEcC
Confidence 99999999998665444 47999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCEEEEEEEeecccCCCCchhHHHHHHHHHHHHHhhccCCCCCCcCcCCCCCcccccccchhhHHHHHHHHHHHHHcC
Q 004397 619 KELNMYRCVGRYGYMDVRDQEEPFERILVENLKQFIRDDYKFSPQSQESAHDSDEDTIHGVQKEALERDIEAVDKAWEAG 698 (756)
Q Consensus 619 ~~~~~~r~v~ryGy~d~~~~~~~f~~~l~~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~a~~~~ 698 (756)
++ |+|||++||||||++|+|++||+++.++|++|++++...+...++ . .+. ...+...|||++.++++.|+|
T Consensus 559 ~~-g~~rv~~~yGf~e~~~~~~~l~~~ii~~L~~fi~~~~~~~~~~~~-~--~~~----~~~~~~~eee~~~~~~~~~~g 630 (688)
T TIGR00794 559 TE-GMYRCVIRYGFMDTPNEPKELAAHIVNSIVEFVEHECGFNLNNLE-E--LSD----KRCRMPIEEIFENAMETKEHG 630 (688)
T ss_pred CC-CEEEEEEEecCCcCCCcHHHHHHHHHHHHHHHHHHHhhhcccccc-c--ccc----cccccchHHHHHHHHHHhhcC
Confidence 44 999999999999999999999999999999999875421100000 0 000 001113688999999999999
Q ss_pred ceEEeecceEEeccCCCccHHHHH-HHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 699 AVHLIGENEVVAAEGAGIGKRLMI-NYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 699 ~~y~lg~~~v~a~~~s~~~kk~~~-~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
++||+||++++++++++++|| |+ +++|+||+||||+++++|+||+||++|+|++|||
T Consensus 631 v~yflg~~~~~~~~~~~~~~~-~~I~~lf~~l~rn~~~~~~~~~iP~~rvvevG~~~~i 688 (688)
T TIGR00794 631 YSYFMGEESLILKKRSPILRK-IRVNHVFLFIRRNARRAPKVLEIPPDRLLEVGTVVEI 688 (688)
T ss_pred CEEEeeceEEEECCCccHHHH-HHHHHHHHHHHHhccChhhheeCChhhEEEEeeEEEC
Confidence 999999999999999996687 77 9999999999999999999999999999999997
No 6
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=100.00 E-value=2.7e-216 Score=1798.03 Aligned_cols=609 Identities=33% Similarity=0.583 Sum_probs=584.1
Q ss_pred HHHHhhcceeecccccchhHHhhhcCCC--CC-CCccceehhhHHHHHHHHHHhhhheeeEEEeecCCCCChHHHHHHHH
Q 004397 59 QLAFQSIGIVYGDIGTSPLYVFSSTFPN--GI-NHADDVLGVLSLILYTLTLIPLIKYVFIVLHANDNGDGGTFALYSLI 135 (756)
Q Consensus 59 ~La~~alGVVyGDIGTSPLYv~~~~F~~--~~-~~~~dvlGvLSLIfWtL~liv~iKYv~ivL~Adn~GEGG~fALysLi 135 (756)
.++++|||||||||||||||+++++|.+ ++ +++|||+|++|||||||||++++|||++||||||||||||||||||+
T Consensus 11 ~l~l~aLGVVyGDIGTSPLY~~~~~f~~~~~~~~~~~~vlGvlSLIfWtL~livtiKYv~ivlrADn~GEGGi~AL~aL~ 90 (622)
T PRK10745 11 AITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLILVVSIKYLTFVMRADNAGEGGILTLMSLA 90 (622)
T ss_pred HHHHhhcceEecCCCCChHHHHHHHhccCCCCCCChhHeehhhHHHHHHHHHHHHHHhheEEEecCCCCCchHHHHHHHH
Confidence 3889999999999999999999999965 33 48999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCCCCCCccccccccccccCCCccccccchhhHhhhhhhhhhHHHHHHHHHhhhhhhhcCcccccchhhhhhhc
Q 004397 136 CRYANVGLVPSQQAEDSNVSNFQLELPGNKRSRMASSLKSKLENSRVAKFFLFFATLLGTSMLIGDGVLTPCISVLSAVG 215 (756)
Q Consensus 136 ~r~~~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~l~~l~llG~am~~GDGviTPAISVLSAVe 215 (756)
+|+.+ ++.|.+++++|++|+||+||||+||||||||||||
T Consensus 91 ~~~~~----------------------------------------~~~~~~l~~lgl~Gaal~~gDgvITPAISVLSAVE 130 (622)
T PRK10745 91 GRNTS----------------------------------------ARTTSMLVIMGLIGGSFFYGEVVITPAISVMSAIE 130 (622)
T ss_pred hhhcc----------------------------------------cchhHHHHHHHHHHHHHHhhccccchhHHHHHHhh
Confidence 76543 13345788999999999999999999999999999
Q ss_pred ccccccCCCCCCeeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHh
Q 004397 216 GIKEATSAMTEDRVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFR 295 (756)
Q Consensus 216 GL~v~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~ 295 (756)
||++.+|++ +++|+||||+||++||++||+||+|||++|||||++||++||++|+|||.+ ||+||+|+||+|+++||.
T Consensus 131 GL~v~~p~l-~~~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~ 208 (622)
T PRK10745 131 GLEIVAPQL-DTYIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFLTLAVLGLRSIIA-NPEVLHALNPMWAVHFFL 208 (622)
T ss_pred cccccCCCC-CCccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHhc-CHHHHhHhCHHHHHHHHH
Confidence 999999999 679999999999999999999999999999999999999999999999997 799999999999999999
Q ss_pred hcchhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCCCcccCcccccccCCchHH
Q 004397 296 NNQQAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHPDLVSNTFFKSVPGPVYWP 375 (756)
Q Consensus 296 ~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p~~~~npFy~siP~~~~wP 375 (756)
+||..||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++|+|++||
T Consensus 209 ~~~~~gf~~LG~V~L~vTGaEALYADmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~P~~~~~p 288 (622)
T PRK10745 209 EYKTVSFFALGAVVLAITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLAPDWALIP 288 (622)
T ss_pred hCCCceEEEecceeeeccchHHHhhccCCCCccceeeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhCChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhhh
Q 004397 376 MFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYG 455 (756)
Q Consensus 376 ~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYG 455 (756)
++++||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||+|||+|||
T Consensus 289 ~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYG 368 (622)
T PRK10745 289 LLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYG 368 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhHhHHHHHHHH
Q 004397 456 IAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFAAVLMTIMYVWNNVYRRKY 535 (756)
Q Consensus 456 iAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~iM~~W~~G~~~~~ 535 (756)
+||++||+|||+|++++++.+|||+++++++++++|+.+|++||+||+.|++||||+|+++|++++++|+||++||++++
T Consensus 369 iAVt~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~iM~tW~~G~~~~~ 448 (622)
T PRK10745 369 IAVTGTMVLTSILSTTVARKNWHWNKYFVALILIAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIVMTTWKSERFRLL 448 (622)
T ss_pred hhheeHhHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCChHHHHHHhhcCCCcccceeEEEEecCCCCchhhHHHhhhhccccceeEEEEEEeeecccccCCCceEEEEE
Q 004397 536 FYEVEHKLSPRRINDIAANTNICRIPGLALFYSELVQGIPPIFKHYVENVPALHSVLVFVSIKSLPISKVPADERFIFRR 615 (756)
Q Consensus 536 ~~~~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~~~gvP~~f~h~l~~~~~lH~~vvfv~ik~~pvP~V~~~eR~~v~~ 615 (756)
+++.++++|++++++.+++.++.|+||+|+|||+..+++|+++.||+||||++||++||+||+++|+|+||++||+++++
T Consensus 449 ~~~~~~~~~l~~f~~~l~~~~~~rvpG~avflt~~~~~vP~~l~h~lk~~~~lhe~~v~l~v~~~~~P~V~~~eR~~v~~ 528 (622)
T PRK10745 449 RRMHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALLHNLKHNKVLHERVILLTLRTEDAPYVHNVRRVQIEQ 528 (622)
T ss_pred HHHHhcCCCHHHHHHHhhhcCCCccCeEEEEEeCCCCCCCHHHHHHhhcCCccceEEEEEEEEECCCcccCcccEEEEEE
Confidence 99999999999999999877778999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCEEEEEEEeecccCCCCchhHHHHHHHHHHHHHhhccCCCCCCcCcCCCCCcccccccchhhHHHHHHHHHHHH
Q 004397 616 VEPKELNMYRCVGRYGYMDVRDQEEPFERILVENLKQFIRDDYKFSPQSQESAHDSDEDTIHGVQKEALERDIEAVDKAW 695 (756)
Q Consensus 616 ~~~~~~~~~r~v~ryGy~d~~~~~~~f~~~l~~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~a~ 695 (756)
+++ ++|||++||||||+||+|+.++++..++++ .+ +
T Consensus 529 l~~---g~~rv~~~yGf~e~~~i~~~L~~~~~~g~~--------~~----------------~----------------- 564 (622)
T PRK10745 529 LSP---TFWRVVASYGWRETPNVEEVFHRCGLEGLS--------CR----------------M----------------- 564 (622)
T ss_pred ECC---CEEEEEEEecCCCCCCHHHHHHHHHhCCCC--------CC----------------c-----------------
Confidence 997 899999999999999999999877432221 22 1
Q ss_pred HcCceEEeecceEEeccCCCccHHHHHHHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 696 EAGAVHLIGENEVVAAEGAGIGKRLMINYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 696 ~~~~~y~lg~~~v~a~~~s~~~kk~~~~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
++++||+||++++++++++| .+ ||+++|+||.||+++++++|++|+||++|+|+++||
T Consensus 565 -~~~s~fl~r~~l~~~~~~~m-~~-wr~~lF~~m~rna~~~~~~f~lP~~rvvelG~~v~i 622 (622)
T PRK10745 565 -METSFFMSHESLILGKRPWY-LR-LRGKLFLLLQRNALRAPDQFEIPPNRVIELGTQVEI 622 (622)
T ss_pred -cceEEEEeeEEEEeCCCCCc-HH-HHHHHHHHHHHcCCCHHHHhCCCcccEEEEeeEEeC
Confidence 68999999999999888887 65 999999999999999999999999999999999996
No 7
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-203 Score=1658.73 Aligned_cols=610 Identities=35% Similarity=0.633 Sum_probs=591.0
Q ss_pred HHHHHHhhcceeecccccchhHHhhhcCCC--CCC-CccceehhhHHHHHHHHHHhhhheeeEEEeecCCCCChHHHHHH
Q 004397 57 ILQLAFQSIGIVYGDIGTSPLYVFSSTFPN--GIN-HADDVLGVLSLILYTLTLIPLIKYVFIVLHANDNGDGGTFALYS 133 (756)
Q Consensus 57 ~l~La~~alGVVyGDIGTSPLYv~~~~F~~--~~~-~~~dvlGvLSLIfWtL~liv~iKYv~ivL~Adn~GEGG~fALys 133 (756)
+..++++|+|||||||||||||+++++|.. +.. ++++|+|++||||||||+||++|||+++|||||||||||++|++
T Consensus 15 ~~~l~lgAiGVVyGDIGTSPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEGGilsL~a 94 (627)
T COG3158 15 TKALTLGAIGVVYGDIGTSPLYALREALSGQGGLGVSRDEVLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEGGILSLMA 94 (627)
T ss_pred chhHhhheeeeEeccCCCChHHHHHHHhccCCCCCCCcceeeeHHHHHHHHHHHHHHHhhheeEEecCCCCCchhhhHHH
Confidence 566899999999999999999999999975 433 89999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCCCccccccccccccCCCccccccchhhHhhhhhhhhhHHHHHHHHHhhhhhhhcCcccccchhhhhh
Q 004397 134 LICRYANVGLVPSQQAEDSNVSNFQLELPGNKRSRMASSLKSKLENSRVAKFFLFFATLLGTSMLIGDGVLTPCISVLSA 213 (756)
Q Consensus 134 Li~r~~~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~l~~l~llG~am~~GDGviTPAISVLSA 213 (756)
|++|.++ +...++.++|++|+|+++|||+||||||||||
T Consensus 95 L~~~~~~-----------------------------------------~~~~~l~~~g~iGaalf~GD~vITPAiSVlSA 133 (627)
T COG3158 95 LARRAAP-----------------------------------------RRTALLIILGLIGAALFYGDAVITPAISVLSA 133 (627)
T ss_pred HHHhhcC-----------------------------------------CCchhhhhHHHHhHHHHhcccccchhHHHHHH
Confidence 9987654 23457899999999999999999999999999
Q ss_pred hcccccccCCCCCCeeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHH
Q 004397 214 VGGIKEATSAMTEDRVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDY 293 (756)
Q Consensus 214 VeGL~v~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~f 293 (756)
||||++.+|.+ +++|+|||++||++||++||+||++||++|||||++||+++|++|++||.+ ||+||+|+||+||++|
T Consensus 134 vEGL~iv~p~~-~~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FGPVm~lWF~~l~~~Gl~~i~~-~p~IL~AiNP~yAi~f 211 (627)
T COG3158 134 VEGLEIVTPAL-DPYVVPITLIILVLLFLIQRFGTGRVGKLFGPVMLLWFLALAVLGLINIID-DPEILRAINPYYAVHF 211 (627)
T ss_pred hccccccCccc-cCccHHHHHHHHHHHHHHhcccchhhhhhhccHHHHHHHHHHHHHHHHHhc-CHHHHHHhChHHHHHH
Confidence 99999999999 689999999999999999999999999999999999999999999999998 8999999999999999
Q ss_pred HhhcchhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCCCcccCcccccccCCch
Q 004397 294 FRNNQQAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHPDLVSNTFFKSVPGPVY 373 (756)
Q Consensus 294 f~~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p~~~~npFy~siP~~~~ 373 (756)
+.++|..||++||+||||+||+||||||||||||+|||.||+++|+|||+|||+||||++++||++..||||.++|+|++
T Consensus 212 l~~~~~~gf~vLGaVfLavTGaEALYADmGHfGr~pI~~AWf~vv~P~L~LNY~GQGA~vL~~p~a~~npFF~~~P~~al 291 (627)
T COG3158 212 LLEEGFVGFFVLGAVFLAVTGAEALYADMGHFGRKPIRVAWFFVVLPCLLLNYFGQGALLLSNPEAIGNPFFLLAPDWAL 291 (627)
T ss_pred HHhCCceEEEEeeeeeeeeccHHHHHhhccccCCccHHHHHHHHHHHHHHHHHccccceeccCcccccCcHHHhChhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhh
Q 004397 374 WPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNA 453 (756)
Q Consensus 374 wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~A 453 (756)
||+++|||+||||||||+|||+||++|||++||++|||||.|||+++.||||||.|||+|+++++.++++||+|++||+|
T Consensus 292 iP~viLAT~ATVIASQAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaA 371 (627)
T COG3158 292 IPLVILATAATVIASQAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAA 371 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhHhHHHHHH
Q 004397 454 YGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFAAVLMTIMYVWNNVYRR 533 (756)
Q Consensus 454 YGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~iM~~W~~G~~~ 533 (756)
||||||++|+|||+|++.+|+..|||+.+.+.++.++|+.+|..||+||+.|+.||||+|+++|++++++|+||++|+++
T Consensus 372 YGiAVTgtM~iTt~L~~~~~~~~w~w~~~~~~~~~~~f~~id~~Ff~AN~~Ki~~GGw~pllia~~i~~vM~tW~~g~~~ 451 (627)
T COG3158 372 YGIAVTGTMVITTILLTVVMRKKWKWRKWLVALILIVFLAIDILFFAANLLKIHDGGWLPLLLAAVIFFVMWTWKRGRQI 451 (627)
T ss_pred hChheeehhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChHHHHHHhhcCCCcccceeEEEEecCCCCchhhHHHhhhhccccceeEEEEEEeeecccccCCCceEEE
Q 004397 534 KYFYEVEHKLSPRRINDIAANTNICRIPGLALFYSELVQGIPPIFKHYVENVPALHSVLVFVSIKSLPISKVPADERFIF 613 (756)
Q Consensus 534 ~~~~~~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~~~gvP~~f~h~l~~~~~lH~~vvfv~ik~~pvP~V~~~eR~~v 613 (756)
.+++..++++|+|.+++.+++.++.|||||++|+|+..+.+|.+++||+|||+++||++||++|++.++|+|+++||+.+
T Consensus 452 l~~~~~~~~i~l~~fi~~l~~~~p~~v~gTAVfLt~~~~~vP~aLlhnlkhnkvlhe~nv~ltv~t~~~P~v~~~~r~~v 531 (627)
T COG3158 452 LFEKTRENGIPLDAFIASLEKHPPVRVPGTAVFLTRDPDVVPRALLHNLKHNKVLHERNVFLTVRTEDVPYVHPTDRVKV 531 (627)
T ss_pred HHHHhhcCCCCHHHHHHHHhhCCCcccCceEEEEcCCCCcCcHHHHHHhhhhheeeeeEEEEEEEecCCCCCCccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCEEEEEEEeecccCCCCchhHHHHHHHHHHHHHhhccCCCCCCcCcCCCCCcccccccchhhHHHHHHHHHH
Q 004397 614 RRVEPKELNMYRCVGRYGYMDVRDQEEPFERILVENLKQFIRDDYKFSPQSQESAHDSDEDTIHGVQKEALERDIEAVDK 693 (756)
Q Consensus 614 ~~~~~~~~~~~r~v~ryGy~d~~~~~~~f~~~l~~~l~~fi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 693 (756)
+++++ +++|+.++|||||+||+|+.++.|..++++ ++ +
T Consensus 532 e~l~~---~f~rV~l~~Gfme~pnvp~~l~~~~~~G~~--------f~----------------i--------------- 569 (627)
T COG3158 532 EQLSD---DFVRVVLHFGFMETPNVPRALRLCRKKGLK--------FD----------------I--------------- 569 (627)
T ss_pred eeccC---ceEEEEEEeeccCCCCHHHHHHHHhhcCce--------ec----------------c---------------
Confidence 99998 799999999999999999999998766543 32 1
Q ss_pred HHHcCceEEeecceEEeccCCCccHHHHHHHHHHHHHHhccCccccccCCCCCEEEEEEEEEC
Q 004397 694 AWEAGAVHLIGENEVVAAEGAGIGKRLMINYAFNFLKKNLRGSETVFDIPHKRMVKVGMTYEL 756 (756)
Q Consensus 694 a~~~~~~y~lg~~~v~a~~~s~~~kk~~~~~~f~fL~rN~r~~~~~~~IP~~rlvevG~~~~i 756 (756)
++++||+|||+++++++++| .+ |++++|..|.||+.+++++|+||+|||+|+|.++||
T Consensus 570 ---m~tsFfl~re~l~~~~~~g~-~~-w~~~lfi~l~r~aa~~~~~F~lp~~rvvElGtqveI 627 (627)
T COG3158 570 ---METSFFLSRESLIASKNSGM-PR-WRDRLFIALARNAASPTDYFKLPPNRVVELGTQVEI 627 (627)
T ss_pred ---cceEEEEEeeeeecCCCCCc-hH-HHHHHHHHHHHhcCCHHHhhCCCCCcEEEeeeeeeC
Confidence 78999999999999999999 65 999999999999999999999999999999999987
No 8
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=100.00 E-value=1.5e-199 Score=1650.21 Aligned_cols=532 Identities=47% Similarity=0.838 Sum_probs=518.0
Q ss_pred HHhhcceeecccccchhHHhhhcCCC--CCCCccceehhhHHHHHHHHHHhhhheeeEEEeecCCCCChHHHHHHHHhhh
Q 004397 61 AFQSIGIVYGDIGTSPLYVFSSTFPN--GINHADDVLGVLSLILYTLTLIPLIKYVFIVLHANDNGDGGTFALYSLICRY 138 (756)
Q Consensus 61 a~~alGVVyGDIGTSPLYv~~~~F~~--~~~~~~dvlGvLSLIfWtL~liv~iKYv~ivL~Adn~GEGG~fALysLi~r~ 138 (756)
|++|+|||||||||||||+|+++|.+ ..+++|||+|+||||||||||++++|||+++|||||||||||||||||+||.
T Consensus 1 a~~alGVVyGDIGTSPLY~~~~~f~~~~~~~~~~~vlG~lSlIfWtL~liv~iKYv~ivlradn~GEGGi~aL~sL~~~~ 80 (534)
T PF02705_consen 1 ALGALGVVYGDIGTSPLYVFKEIFGSHGLPPTEENVLGVLSLIFWTLTLIVTIKYVLIVLRADNNGEGGIFALYSLIRRF 80 (534)
T ss_pred CceeEEEEeCCCCCCHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHHHHHheEEEEEEeCCCCChhHHHHHHHHHHh
Confidence 68999999999999999999999932 4469999999999999999999999999999999999999999999999853
Q ss_pred cccCCCCCCCccccccccccccCCCccccccchhhHhhhhhhhhhHHHHHHHHHhhhhhhhcCcccccchhhhhhhcccc
Q 004397 139 ANVGLVPSQQAEDSNVSNFQLELPGNKRSRMASSLKSKLENSRVAKFFLFFATLLGTSMLIGDGVLTPCISVLSAVGGIK 218 (756)
Q Consensus 139 ~~~~~ipn~~~~d~~~s~~~~~~~~~~~~~~~~~~k~~le~~~~~~~~l~~l~llG~am~~GDGviTPAISVLSAVeGL~ 218 (756)
.+ ++++.|..++++|++|+||+||||+||||||||||||||+
T Consensus 81 ~~--------------------------------------~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvEGl~ 122 (534)
T PF02705_consen 81 LK--------------------------------------SSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVEGLE 122 (534)
T ss_pred hc--------------------------------------cchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhhhhh
Confidence 33 2335666789999999999999999999999999999999
Q ss_pred cccCCCCCCeeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcc
Q 004397 219 EATSAMTEDRVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQ 298 (756)
Q Consensus 219 v~~p~l~~~~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g 298 (756)
+.+|+++ ++|+||||+||++||++||+||+|||++|||||++||++||++|+|||.+| |+||+|+||+|+++||.+||
T Consensus 123 v~~p~~~-~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~ 200 (534)
T PF02705_consen 123 VATPSLE-PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNG 200 (534)
T ss_pred ccCCCCc-ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcC
Confidence 9999995 899999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred hhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCCCcccCcccccccCCchHHHHH
Q 004397 299 QAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHPDLVSNTFFKSVPGPVYWPMFV 378 (756)
Q Consensus 299 ~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p~~~~npFy~siP~~~~wP~~v 378 (756)
+.||.+||+|+||+||+||||||||||||+|||+||+++|||||+|||+||||||++||++.+||||+++|+|++||+++
T Consensus 201 ~~~~~~LG~V~L~~TGaEALyADmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~p~~i 280 (534)
T PF02705_consen 201 WIGFFVLGAVFLCVTGAEALYADMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHPEAVSNPFFLLIPEWLLWPMVI 280 (534)
T ss_pred CchhhhcchHHHHHhhHHHHHhhhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCcchhhhHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhhhhhh
Q 004397 379 VAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAV 458 (756)
Q Consensus 379 lAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 458 (756)
+||+||||||||+|||+||+++||++||||||+||+|||++++||||||+|||+||++|++++++||||+|||+|||+||
T Consensus 281 lAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAV 360 (534)
T PF02705_consen 281 LATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAV 360 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhHhHHHHHHHHHHH
Q 004397 459 VFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFAAVLMTIMYVWNNVYRRKYFYE 538 (756)
Q Consensus 459 ~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~ 538 (756)
++||++||+|++++|+.+||||++++++|+++|+.+|+.||+||+.||+||||+|+++|++++++|+||+|||+++++++
T Consensus 361 t~tM~iTT~L~~~v~~~~w~~~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~G~~~~~~~~ 440 (534)
T PF02705_consen 361 TGTMLITTILLFLVMRRVWKWPLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRRGRKLLYEFE 440 (534)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHhhcCCCcccceeEEEEecCCCCchhhHHHhhhhccccceeEEEEEEeeecccccCCCceEEEEEecC
Q 004397 539 VEHKLSPRRINDIAANTNICRIPGLALFYSELVQGIPPIFKHYVENVPALHSVLVFVSIKSLPISKVPADERFIFRRVEP 618 (756)
Q Consensus 539 ~~~~~s~~~~~~~~~~~~~~RvpG~avf~t~~~~gvP~~f~h~l~~~~~lH~~vvfv~ik~~pvP~V~~~eR~~v~~~~~ 618 (756)
+++++++++++++.++.++.|+||+|+|+|+..+++|+++.||++|||++||+++|+|++++|+|+||++||++++++++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~rvpG~aVFlt~~~~~vP~~l~h~l~~~~vlhe~~v~l~v~~~~vP~V~~~~R~~v~~l~~ 520 (534)
T PF02705_consen 441 RENKLPLDDFLELLEDQSIPRVPGTAVFLTRSPDGVPPALLHNLKHNKVLHERVVFLTVKTEPVPRVPPEERYEVERLGP 520 (534)
T ss_pred HhcCCCHHHHHHhhhhCCCceecceEEEEcCCCccCcHHHHHHHHhCCcccceEEEEEEEEeccCCCCCceEEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCCEEEEEEEeeccc
Q 004397 619 KELNMYRCVGRYGYMD 634 (756)
Q Consensus 619 ~~~~~~r~v~ryGy~d 634 (756)
+++|||++||||||
T Consensus 521 --~g~~rv~~ryGf~e 534 (534)
T PF02705_consen 521 --DGFYRVTLRYGFME 534 (534)
T ss_pred --CCEEEEEEEecCCC
Confidence 39999999999998
No 9
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=93.54 E-value=0.36 Score=55.11 Aligned_cols=86 Identities=15% Similarity=0.125 Sum_probs=45.5
Q ss_pred eehhHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcchhHHH-H
Q 004397 229 VVWISAAILVCLFLFQRLGTDKVGYT---FAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQAAWI-S 304 (756)
Q Consensus 229 Vv~Is~~ILv~LF~iQr~GT~kVg~~---FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~~~-~ 304 (756)
...+++++++++..+.-+|....+++ +.-+.++=++.+.+.|++.+.+.++. ..+|...+.-. .++..+|. .
T Consensus 165 ~~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~---~~~~~~~f~~~-~~~~~~~~~a 240 (501)
T TIGR00911 165 IRLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVE---SLNPKNAFEGT-ETSAGGIVLA 240 (501)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---ccCcccccCCC-CCcHHHHHHH
Confidence 35678888888999999997665543 33222222233334555544331111 12222211100 02334454 5
Q ss_pred hhhhhhhhcccccc
Q 004397 305 LGGIILCTTGAEAL 318 (756)
Q Consensus 305 LG~VvLciTGaEAL 318 (756)
+..++.+.+|-|+.
T Consensus 241 ~~~~~~af~G~e~~ 254 (501)
T TIGR00911 241 FYSGIWAYGGWNYL 254 (501)
T ss_pred HHHHHHHHHhHHHH
Confidence 77888889998864
No 10
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=91.04 E-value=5.2 Score=44.30 Aligned_cols=186 Identities=14% Similarity=0.065 Sum_probs=105.8
Q ss_pred eeehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcchhHHHHhhh
Q 004397 228 RVVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQAAWISLGG 307 (756)
Q Consensus 228 ~Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~~~~LG~ 307 (756)
....++.+++++++.++-+|....++...-..++=++.+..+.+..+...+......+++... .......-...++.
T Consensus 133 ~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 209 (466)
T COG0531 133 LIILIALALIALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNP---GGGSFGGILAAILL 209 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCccc---ccchHHHHHHHHHH
Confidence 467889999999999999999888886665555555555555555555433322222221111 00011134566777
Q ss_pred hhhhhcccccc--ccc-CCCCcccceeeeehhhHHHHHHHhhccchhhhccCCC-ccc-----Ccccc---ccc-CCchH
Q 004397 308 IILCTTGAEAL--FAD-VGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHPD-LVS-----NTFFK---SVP-GPVYW 374 (756)
Q Consensus 308 VvLciTGaEAL--yAD-lGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p~-~~~-----npFy~---siP-~~~~w 374 (756)
++.+.+|-|+. +|+ +=+ .+|.|-.+-..-+.-+.++-.+++-+....-|. +.. +|+.. ... .+..+
T Consensus 210 ~~~~f~G~e~~~~~a~E~kn-p~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~ 288 (466)
T COG0531 210 AFFAFTGFEAIATLAEEVKN-PKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAI 288 (466)
T ss_pred HHHHhhcHHHHHHHHHHhcC-ccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHH
Confidence 88999998864 332 333 455566555554333444434444443333332 111 44432 222 35566
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCC
Q 004397 375 PMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSS 418 (756)
Q Consensus 375 P~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~ 418 (756)
-+.+++.+++.-+..+.+.+.--+..+.-+-|++|+ +..+.++
T Consensus 289 ~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~-~~~~~~~ 331 (466)
T COG0531 289 IIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPK-FFAKVNP 331 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HHHHhCC
Confidence 666666666666667777777777777778999999 3334433
No 11
>TIGR00909 2A0306 amino acid transporter.
Probab=86.47 E-value=15 Score=40.98 Aligned_cols=211 Identities=13% Similarity=0.096 Sum_probs=98.9
Q ss_pred ehhHHHHHHHHHHHhhhcccccc---cchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcchhH-HHHh
Q 004397 230 VWISAAILVCLFLFQRLGTDKVG---YTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQQAA-WISL 305 (756)
Q Consensus 230 v~Is~~ILv~LF~iQr~GT~kVg---~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~-~~~L 305 (756)
..++++++++...+..+|....+ ..+..+.++=++.+.+.|+.+. ++.-+..+.| ++..+ ...+
T Consensus 134 ~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~~~~~~~~~---------~~~~~~~~~~ 201 (429)
T TIGR00909 134 NLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF---ASNNYTPFMP---------MGFGGVGAAT 201 (429)
T ss_pred cHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cHHhcCCCCC---------CcHHHHHHHH
Confidence 34567778888889999976555 4566655554444444555432 2332222223 12222 2235
Q ss_pred hhhhhhhcccccccc--cCCCCcccceeeeehhhHHHHHHHhhccchhhhcc-CC-C---cccCccc----ccccCCchH
Q 004397 306 GGIILCTTGAEALFA--DVGHFTVLSIRISTCGVVYPALILAYTGQASFLRK-HP-D---LVSNTFF----KSVPGPVYW 374 (756)
Q Consensus 306 G~VvLciTGaEALyA--DlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~-~p-~---~~~npFy----~siP~~~~w 374 (756)
...+.+.+|-|+.-. +-=+-.+|.+.+|-..-+. ...+.|+.-...... -| + +.++|+. +...++.-+
T Consensus 202 ~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~-~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR00909 202 ALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLI-VVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGL 280 (429)
T ss_pred HHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHH-HHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHH
Confidence 556677778776543 3334455667766543222 222224443322221 11 1 1123432 222233334
Q ss_pred HHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhh
Q 004397 375 PMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAY 454 (756)
Q Consensus 375 P~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AY 454 (756)
-+.+.+.++..-+..+.+.+.=-+....-+.|.+|+. .-++++|. | .|..--++..+...+...+.+.+.+.+..
T Consensus 281 ~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~-~~~~~~~~-~---~P~~a~~~~~~i~~~~~~~~~~~~l~~~~ 355 (429)
T TIGR00909 281 ILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS-LSKVHPKT-G---TPHMSIIIFSLTAALLASLVPLEGLAELT 355 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH-HHHcCCCC-C---CcHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 3444444444444444444444455555578999972 22333221 1 67543333222222223344445555544
Q ss_pred hhhh
Q 004397 455 GIAV 458 (756)
Q Consensus 455 GiAV 458 (756)
+++.
T Consensus 356 ~~~~ 359 (429)
T TIGR00909 356 SIGT 359 (429)
T ss_pred HHHH
Confidence 3333
No 12
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=83.26 E-value=7.9 Score=42.79 Aligned_cols=247 Identities=13% Similarity=0.080 Sum_probs=133.0
Q ss_pred ccchhhhhhhcccccc-cCCCCCC--eeehhHHHHHHHHHHHhhhcccccccc---hhhHHH-HHHHHHHHhHhHhhccc
Q 004397 205 TPCISVLSAVGGIKEA-TSAMTED--RVVWISAAILVCLFLFQRLGTDKVGYT---FAPILL-VWFAFIAGIGIYNIIHY 277 (756)
Q Consensus 205 TPAISVLSAVeGL~v~-~p~l~~~--~Vv~Is~~ILv~LF~iQr~GT~kVg~~---FgPIm~-vWF~~l~~iGiynI~~~ 277 (756)
+.++...++.+-+... .|++.++ ....+++++++..+.+.-+|....+++ .+=+.+ .-++.+.+.|++...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~- 169 (426)
T PF13520_consen 91 SLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSF- 169 (426)
T ss_dssp HHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-
T ss_pred cccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecc-
Confidence 3444444455555432 2343221 345678888888999999998776654 332333 3445556667665543
Q ss_pred Ccce-----eeecChHHHHHHHhhcchhHHHHhhhhhhhhcccccccccCCCCcccceeeeehhhHHHHHHHhhccchhh
Q 004397 278 DPTV-----IKALNPRYIVDYFRNNQQAAWISLGGIILCTTGAEALFADVGHFTVLSIRISTCGVVYPALILAYTGQASF 352 (756)
Q Consensus 278 ~p~V-----l~AlnP~ya~~ff~~~g~~~~~~LG~VvLciTGaEALyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~ 352 (756)
+..- ....+|. ....-+..+...+.+.+|-|+.=.-.+-..+|.+..+-..-+.-+.++.-+..-++
T Consensus 170 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~~~ 241 (426)
T PF13520_consen 170 SGFNSLSFSLSTFFPS--------GWPGFLAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSIAL 241 (426)
T ss_dssp CHHH----SHSCSSCS--------SSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCc--------cccchhhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhhee
Confidence 1111 1122222 00113667888899999999865444444456666554443333333333333333
Q ss_pred hccCCCc----ccC------cccc-cccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEecCCCcC
Q 004397 353 LRKHPDL----VSN------TFFK-SVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHTSSEYE 421 (756)
Q Consensus 353 Ll~~p~~----~~n------pFy~-siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hTS~~~~ 421 (756)
...-|++ .+| .+++ .-.++..+.+.+.+.++.+-+-.+.+.+.--++.+.-+-|.+|+ +..|++| .
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~-~~~~~~k--~ 318 (426)
T PF13520_consen 242 LGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPK-WFAKVNK--F 318 (426)
T ss_dssp HTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSG-GGGTTSS--S
T ss_pred eecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhh-hhhhccc--c
Confidence 3333321 112 2222 23467888888888888887777777777777778888899994 3333332 2
Q ss_pred CceeechhHHHHHHHhh-eeE--Eeec---CchhhhhhhhhhhHHHHHHHH
Q 004397 422 GQVYVPEVNYLLMLACI-GVT--MGFR---TTVKIGNAYGIAVVFVMTLTS 466 (756)
Q Consensus 422 GQIYIP~VNw~Lmv~~i-~vv--~~F~---~s~~l~~AYGiAV~~~M~iTT 466 (756)
| .|..-.++...+. ++. ..|- +.+.+.+.+.+......+++.
T Consensus 319 ~---~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 366 (426)
T PF13520_consen 319 G---TPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVI 366 (426)
T ss_dssp S---SCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred C---CceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2554444333332 222 2232 335566666666666666553
No 13
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=83.19 E-value=27 Score=39.78 Aligned_cols=58 Identities=12% Similarity=0.020 Sum_probs=29.9
Q ss_pred hHHHHhhhhhhhhcccccc--cccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCC
Q 004397 300 AAWISLGGIILCTTGAEAL--FADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHP 357 (756)
Q Consensus 300 ~~~~~LG~VvLciTGaEAL--yADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p 357 (756)
.++...++++.+.+|-|.. +|+==+-.+|.+-.|-..-+.=+.++-.+++-++...-|
T Consensus 195 ~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 195 DNVVLAASIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred ccHHHHHHHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3444445567788888743 444334556666666554433333443334444433333
No 14
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=82.51 E-value=6.8 Score=44.52 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=17.7
Q ss_pred CcHHHHHHHHHHhhhhHhHHHHHH
Q 004397 510 GYLPLIFAAVLMTIMYVWNNVYRR 533 (756)
Q Consensus 510 GW~pl~ia~v~~~iM~~W~~G~~~ 533 (756)
-|.++++++++...+..|....++
T Consensus 454 ny~~~~~~~~~~~~~~~~~~~~r~ 477 (482)
T TIGR00907 454 NYAVVVFAGVLAISLVYWKYKGRK 477 (482)
T ss_pred ChHhHHHHHHHHHHHHHheEecee
Confidence 499999988888777777653333
No 15
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=81.20 E-value=83 Score=35.53 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHhhhcccccccc
Q 004397 232 ISAAILVCLFLFQRLGTDKVGYT 254 (756)
Q Consensus 232 Is~~ILv~LF~iQr~GT~kVg~~ 254 (756)
++++++..+..+..+|+...+++
T Consensus 124 ~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 124 ACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 35566667888999998877664
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=80.21 E-value=43 Score=37.57 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHhHhHhhcccCcceee-ecChHHHHHHHhhcchhHH-HHh
Q 004397 231 WISAAILVCLFLFQRLGTDKVGYT---FAPILLVWFAFIAGIGIYNIIHYDPTVIK-ALNPRYIVDYFRNNQQAAW-ISL 305 (756)
Q Consensus 231 ~Is~~ILv~LF~iQr~GT~kVg~~---FgPIm~vWF~~l~~iGiynI~~~~p~Vl~-AlnP~ya~~ff~~~g~~~~-~~L 305 (756)
.+++++++.+..+.-+|+...+++ ..-..++-++.+.+.|++.. +|+-+. .++|.-. .+ ..++ .++
T Consensus 125 ~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~---~~~~~~~~~~~~~~-~~-----~~~~~~~~ 195 (438)
T PRK10655 125 LATIGVLWLCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWF---SPSLYVAAWNPHHL-PF-----FSAVGSSI 195 (438)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcccccCCcCccCC-ch-----HHHHHHHH
Confidence 345666777888999998766654 22233333444444554432 233221 1222100 00 0111 224
Q ss_pred hhhhhhhcccccc--cccCCCCcccceeee
Q 004397 306 GGIILCTTGAEAL--FADVGHFTVLSIRIS 333 (756)
Q Consensus 306 G~VvLciTGaEAL--yADlGHFg~~~Iq~a 333 (756)
..++.+.+|-|+. +|+=-+-.+|.+-.|
T Consensus 196 ~~~~~af~G~e~~~~~a~E~k~P~r~iPrA 225 (438)
T PRK10655 196 AMTLWAFLGLESACANSDAVENPERNVPIA 225 (438)
T ss_pred HHHHHHHhhhhhhhhhHHHhhCccccccHH
Confidence 4567777787743 333334455555554
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=77.69 E-value=39 Score=39.19 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHhhhccccccc
Q 004397 231 WISAAILVCLFLFQRLGTDKVGY 253 (756)
Q Consensus 231 ~Is~~ILv~LF~iQr~GT~kVg~ 253 (756)
.++.++++++..+.-+|....++
T Consensus 146 ~~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 146 VFALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777888888888776665
No 18
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=74.83 E-value=1.3e+02 Score=34.34 Aligned_cols=45 Identities=9% Similarity=-0.200 Sum_probs=29.9
Q ss_pred cccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCce
Q 004397 367 SVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHV 411 (756)
Q Consensus 367 siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~ 411 (756)
...++..+.+.+.+.++++-+..+.+.++--+..+.-+-|.+|+.
T Consensus 273 ~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~ 317 (468)
T TIGR03810 273 MVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY 317 (468)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH
Confidence 334555555555566666666666666666677777788999964
No 19
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=73.48 E-value=1.3e+02 Score=35.75 Aligned_cols=45 Identities=13% Similarity=0.352 Sum_probs=26.7
Q ss_pred eehhHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHhHhHh
Q 004397 229 VVWISAAILVCLFLFQRLGTDKVGYT---FAPILLVWFAFIAGIGIYN 273 (756)
Q Consensus 229 Vv~Is~~ILv~LF~iQr~GT~kVg~~---FgPIm~vWF~~l~~iGiyn 273 (756)
...+++++++++..+--+|+...+++ +.-+.++-++.+.+.|+..
T Consensus 161 ~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~ 208 (557)
T TIGR00906 161 PDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTK 208 (557)
T ss_pred chHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 34567777777788888998766653 3333333334444555543
No 20
>TIGR00930 2a30 K-Cl cotransporter.
Probab=68.92 E-value=73 Score=40.41 Aligned_cols=25 Identities=12% Similarity=0.060 Sum_probs=18.5
Q ss_pred eehhHHHHHHHHHHHhhhccccccc
Q 004397 229 VVWISAAILVCLFLFQRLGTDKVGY 253 (756)
Q Consensus 229 Vv~Is~~ILv~LF~iQr~GT~kVg~ 253 (756)
+-.++++++++++.+--+|....++
T Consensus 203 ~~iia~i~l~ll~~In~~Gvk~~ak 227 (953)
T TIGR00930 203 IRIYGTVTVVVLLGISFAGMEWENK 227 (953)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4457778888888888889865544
No 21
>PRK10249 phenylalanine transporter; Provisional
Probab=68.80 E-value=78 Score=36.12 Aligned_cols=102 Identities=19% Similarity=0.166 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHH--HhhcchhH-HHHh
Q 004397 232 ISAAILVCLFLFQRLGTDKVGYT---FAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDY--FRNNQQAA-WISL 305 (756)
Q Consensus 232 Is~~ILv~LF~iQr~GT~kVg~~---FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~f--f~~~g~~~-~~~L 305 (756)
++.++++++..+.-+|....|++ +.=+-++..+.+.++|+.-+...++. ...++.+..+. +..++..+ +..+
T Consensus 138 ~~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~ 215 (458)
T PRK10249 138 WAAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGG--EKASIDNLWRYGGFFATGWNGLILSL 215 (458)
T ss_pred HHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCChhhccCCCCCCCCcHHHHHHHH
Confidence 45667777788888888766653 33333444455555555544332211 01122111100 01234444 4567
Q ss_pred hhhhhhhcccccc--cccCCCCcccceeeeeh
Q 004397 306 GGIILCTTGAEAL--FADVGHFTVLSIRISTC 335 (756)
Q Consensus 306 G~VvLciTGaEAL--yADlGHFg~~~Iq~aw~ 335 (756)
..++.+.+|-|.. .|+=-+-.+|.|-.|-.
T Consensus 216 ~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~ 247 (458)
T PRK10249 216 AVIMFSFGGLELIGITAAEARDPEKSIPKAVN 247 (458)
T ss_pred HHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHH
Confidence 7778888998865 55555566666655543
No 22
>PRK10746 putative transport protein YifK; Provisional
Probab=65.34 E-value=1.8e+02 Score=33.41 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhhcceeecccccchhHHhhhcCCC
Q 004397 52 MKWSVILQLAFQSIGIVYGDIGTSPLYVFSSTFPN 86 (756)
Q Consensus 52 ~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~~ 86 (756)
.+.+....+++++. |||.-+..-+.....
T Consensus 12 L~~~~~~~i~ig~~------IGtGlf~~~g~~l~~ 40 (461)
T PRK10746 12 LEARHIELIALGGT------IGVGLFMGAASTLKW 40 (461)
T ss_pred CcHHHHHHHHHHhh------hhhhHHHHhHHHHHh
Confidence 66777777777665 899888877777643
No 23
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=64.41 E-value=1.2e+02 Score=34.10 Aligned_cols=24 Identities=8% Similarity=0.135 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHhhhcccccccc
Q 004397 231 WISAAILVCLFLFQRLGTDKVGYT 254 (756)
Q Consensus 231 ~Is~~ILv~LF~iQr~GT~kVg~~ 254 (756)
.+++++++.+..+.-+|....+++
T Consensus 123 ~~~~~~~~~~~~ln~~g~~~~~~i 146 (442)
T TIGR00908 123 LAALVFYIVFIGINILGVGEAAKL 146 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666777788888898777764
No 24
>PRK11021 putative transporter; Provisional
Probab=60.86 E-value=2.8e+02 Score=30.99 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=49.6
Q ss_pred eehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHHHhHhHhhc-ccCcceeeecChHHHHHHHhhcchhHH-HHhh
Q 004397 229 VVWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIAGIGIYNII-HYDPTVIKALNPRYIVDYFRNNQQAAW-ISLG 306 (756)
Q Consensus 229 Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~~iGiynI~-~~~p~Vl~AlnP~ya~~ff~~~g~~~~-~~LG 306 (756)
..++++++++.+..+.-+|.+..+++-.=+. ++.+..+++.-.. +.+++-+ .+++ +..++..++ ..+.
T Consensus 115 ~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~~ 184 (410)
T PRK11021 115 LLLAELLTLALLWLLNLRGASSSANLQTVIA---LLIVALVVAIWWAGDIKPADI-PFPA------PGSIEWSGLFAALG 184 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHcCCchhcC-CCCC------CCCccHHHHHHHHH
Confidence 3567788888889999999888876433111 1122222222111 1122211 1110 011233332 3355
Q ss_pred hhhhhhcccccc--cccCCCCcccceeeeehh
Q 004397 307 GIILCTTGAEAL--FADVGHFTVLSIRISTCG 336 (756)
Q Consensus 307 ~VvLciTGaEAL--yADlGHFg~~~Iq~aw~~ 336 (756)
.++.+.+|-|+. +|+==+-.+|.|..|-..
T Consensus 185 ~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~ 216 (410)
T PRK11021 185 VMFWCFVGIEAFAHLASEFKNPERDFPRALMI 216 (410)
T ss_pred HHHHHHhcHHHHHhhHHhccCccccccHHHHH
Confidence 567788888854 444445566777666554
No 25
>PRK11387 S-methylmethionine transporter; Provisional
Probab=59.48 E-value=1.6e+02 Score=33.73 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=17.2
Q ss_pred chHHHHHHHHHhhcceeecccccchhHHhhhcCC
Q 004397 52 MKWSVILQLAFQSIGIVYGDIGTSPLYVFSSTFP 85 (756)
Q Consensus 52 ~~~~~~l~La~~alGVVyGDIGTSPLYv~~~~F~ 85 (756)
.+.+....++++++ |||..+........
T Consensus 16 L~~~~~~~l~ig~~------IG~Gif~~~g~~~~ 43 (471)
T PRK11387 16 MKVRHLVMLSLGGV------IGTGLFFNTGYIIS 43 (471)
T ss_pred CcHHHHHHHHHHhh------hhhHHHHHHHHHHH
Confidence 56666555555433 89987666666653
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=55.39 E-value=2.7e+02 Score=31.84 Aligned_cols=43 Identities=9% Similarity=-0.063 Sum_probs=25.1
Q ss_pred ccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCc
Q 004397 368 VPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPH 410 (756)
Q Consensus 368 iP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr 410 (756)
..++...-+.+.+.+++.-+..+.+.+.--+..+.-+-|.+||
T Consensus 278 ~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~ 320 (473)
T TIGR00905 278 VGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPK 320 (473)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3444444333334444444555566666666666678899997
No 27
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=55.02 E-value=95 Score=35.06 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHhhhccccccc
Q 004397 231 WISAAILVCLFLFQRLGTDKVGY 253 (756)
Q Consensus 231 ~Is~~ILv~LF~iQr~GT~kVg~ 253 (756)
.+.+++++.+..+.-+|+...++
T Consensus 127 ~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 127 ITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred HHHHHHHHHHHHHHHhchHHHHH
Confidence 34566666778888889876665
No 28
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=52.79 E-value=2.7e+02 Score=32.54 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=30.8
Q ss_pred HHHHhhhhhhhhcccccc--cccCCCCcccceeeeehhhHHHHHHHhhccchhhhccCC
Q 004397 301 AWISLGGIILCTTGAEAL--FADVGHFTVLSIRISTCGVVYPALILAYTGQASFLRKHP 357 (756)
Q Consensus 301 ~~~~LG~VvLciTGaEAL--yADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll~~p 357 (756)
.+..+-+++.+.+|-|+. .|+==+-.+|.+-.|-...+.-+.++.++|--++...-|
T Consensus 196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p 254 (507)
T TIGR00910 196 TLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIP 254 (507)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 455555667788998865 444445556666655544333344444444433333333
No 29
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=52.74 E-value=1.2e+02 Score=34.28 Aligned_cols=100 Identities=12% Similarity=0.162 Sum_probs=47.0
Q ss_pred ehhHHHHHHHHHHHhhhcccccc---cchhhHHHHHHHHHHHhHhHhhcccCcceeeecChHHHHHHHhhcc-hhHH-HH
Q 004397 230 VWISAAILVCLFLFQRLGTDKVG---YTFAPILLVWFAFIAGIGIYNIIHYDPTVIKALNPRYIVDYFRNNQ-QAAW-IS 304 (756)
Q Consensus 230 v~Is~~ILv~LF~iQr~GT~kVg---~~FgPIm~vWF~~l~~iGiynI~~~~p~Vl~AlnP~ya~~ff~~~g-~~~~-~~ 304 (756)
..+++++++.+..+.-+|.+..+ ..+.=+.++=++.+.++|++.... +-+..-.|.. ....+ ..+| ..
T Consensus 128 ~~~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~---~~~~~~~~~~----~~~~g~~~~~~~~ 200 (445)
T PRK11357 128 KFIAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKA---ENFAAPTTTA----IGATGSFMALLAG 200 (445)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---ccccCCCccc----ccccchHHHHHHH
Confidence 34566667777788989876443 344333333344455556654322 1111111100 00011 1111 23
Q ss_pred hhhhhhhhcccccc--cccCCCCcccceeeeehh
Q 004397 305 LGGIILCTTGAEAL--FADVGHFTVLSIRISTCG 336 (756)
Q Consensus 305 LG~VvLciTGaEAL--yADlGHFg~~~Iq~aw~~ 336 (756)
+...+.+.+|-|+. +|+=-+-.+|.|-.|-..
T Consensus 201 ~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 201 ISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 44567777887753 333335556665555433
No 30
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=51.88 E-value=1.4e+02 Score=32.19 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=39.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH----HHHHHHHHhh
Q 004397 450 IGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGS----VELIYLSSVL 503 (756)
Q Consensus 450 l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~----ie~~ffsa~l 503 (756)
-=..||-+|..+.++.++-++..+..+.+.+++.++++.++++. +|-..+|+.-
T Consensus 14 k~~~~G~~vl~ta~la~~s~~~a~~~~~~~~~~~ai~~glvwgl~I~~lDR~ivss~~ 71 (301)
T PF14362_consen 14 KYAGIGAAVLFTALLAGLSGGYALYTVFGGPVWAAIPFGLVWGLVIFNLDRFIVSSIR 71 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34578999999999999988888888888887776666655544 5655555443
No 31
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=50.66 E-value=3.8e+02 Score=30.71 Aligned_cols=25 Identities=16% Similarity=0.302 Sum_probs=18.2
Q ss_pred eehhHHHHHHHHHHHhhhccccccc
Q 004397 229 VVWISAAILVCLFLFQRLGTDKVGY 253 (756)
Q Consensus 229 Vv~Is~~ILv~LF~iQr~GT~kVg~ 253 (756)
...++++++++...+.-+|+...++
T Consensus 144 ~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 144 AVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 4556667777788888899876655
No 32
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=50.39 E-value=3.8e+02 Score=30.68 Aligned_cols=108 Identities=12% Similarity=0.038 Sum_probs=50.2
Q ss_pred HHHhhhhhhhhcccccc--cccCCCCcccceeeeehhhHHHHHHHhhccchhhhc--cCCCcc---cCcccccc----cC
Q 004397 302 WISLGGIILCTTGAEAL--FADVGHFTVLSIRISTCGVVYPALILAYTGQASFLR--KHPDLV---SNTFFKSV----PG 370 (756)
Q Consensus 302 ~~~LG~VvLciTGaEAL--yADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQgA~Ll--~~p~~~---~npFy~si----P~ 370 (756)
+..+..++.+.+|-|+. .|.==+-.+|.|..|-.. ..-...+.|+-....+. ..+++. ++||-... -+
T Consensus 214 ~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~-~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 292 (469)
T PRK11049 214 FAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINS-IPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLP 292 (469)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHH-HHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCCh
Confidence 34555667777888854 333335556666665532 22233444444433222 122322 35653211 11
Q ss_pred CchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCc
Q 004397 371 PVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPH 410 (756)
Q Consensus 371 ~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr 410 (756)
+...-+.+++.++.+-+..+.+.+.=-+....-+-|.+|+
T Consensus 293 ~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~ 332 (469)
T PRK11049 293 AAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPK 332 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 2222222333333333444444444445555557899996
No 33
>PRK10580 proY putative proline-specific permease; Provisional
Probab=49.97 E-value=2.2e+02 Score=32.33 Aligned_cols=99 Identities=18% Similarity=0.165 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhccccccc---chhhHHHHHHHHHHHhHhHhhc---cc--Ccceee-ecChHHHHHHHhhcchhH-H
Q 004397 233 SAAILVCLFLFQRLGTDKVGY---TFAPILLVWFAFIAGIGIYNII---HY--DPTVIK-ALNPRYIVDYFRNNQQAA-W 302 (756)
Q Consensus 233 s~~ILv~LF~iQr~GT~kVg~---~FgPIm~vWF~~l~~iGiynI~---~~--~p~Vl~-AlnP~ya~~ff~~~g~~~-~ 302 (756)
.++++++++.++-+|....++ .+.-+.++-++.+.++|+.-+. .+ +|.-.+ .+++- .++ .++..+ +
T Consensus 127 ~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~-~~g~~~~~ 202 (457)
T PRK10580 127 VLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNG---GFF-SNGWLGMV 202 (457)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCC---CCC-CcchHHHH
Confidence 445566778899999765555 4444444444444444432111 10 111010 01000 011 223323 3
Q ss_pred HHhhhhhhhhcccccc--cccCCCCcccceeeeeh
Q 004397 303 ISLGGIILCTTGAEAL--FADVGHFTVLSIRISTC 335 (756)
Q Consensus 303 ~~LG~VvLciTGaEAL--yADlGHFg~~~Iq~aw~ 335 (756)
..+..++.+.+|-|+. .|.=-+-.+|.|-.|-.
T Consensus 203 ~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~ 237 (457)
T PRK10580 203 MSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAIN 237 (457)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHH
Confidence 4566778888898865 33333556666666543
No 34
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=46.49 E-value=1.3e+02 Score=34.21 Aligned_cols=22 Identities=14% Similarity=0.507 Sum_probs=14.9
Q ss_pred cHHHHHHHHHHhhhhHhHHHHH
Q 004397 511 YLPLIFAAVLMTIMYVWNNVYR 532 (756)
Q Consensus 511 W~pl~ia~v~~~iM~~W~~G~~ 532 (756)
-++..++..++.+++.+++-.+
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~ 464 (478)
T TIGR00913 443 FFEAYLSLPIFIALYIGHKVYK 464 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3566777777777777776654
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=46.45 E-value=3.6e+02 Score=30.78 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHhhhccccccc---chhhHHHHHHHHHHHhHhHhhccc--Ccc-eeeecChHHHHHHHhhcchhHH-HH
Q 004397 232 ISAAILVCLFLFQRLGTDKVGY---TFAPILLVWFAFIAGIGIYNIIHY--DPT-VIKALNPRYIVDYFRNNQQAAW-IS 304 (756)
Q Consensus 232 Is~~ILv~LF~iQr~GT~kVg~---~FgPIm~vWF~~l~~iGiynI~~~--~p~-Vl~AlnP~ya~~ff~~~g~~~~-~~ 304 (756)
.+++++++++.+.-+|+...++ .+.-+-++-++.+-++|+.-+... +|. .+.-+.+. .-+..++..++ ..
T Consensus 129 ~~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~~~ 205 (456)
T PRK10238 129 SAAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQ---GGFLPHGFTGLVMM 205 (456)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCC---CCCccccHHHHHHH
Confidence 4555566778888888876655 223332322333333344332221 121 11111000 00112233333 34
Q ss_pred hhhhhhhhccccc--ccccCCCCcccceeeeehhhHHHHHHHhhccc
Q 004397 305 LGGIILCTTGAEA--LFADVGHFTVLSIRISTCGVVYPALILAYTGQ 349 (756)
Q Consensus 305 LG~VvLciTGaEA--LyADlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQ 349 (756)
++.++.+.+|-|+ ..|.=-+-.+|.+-.|-.. +.-.+.+.|++=
T Consensus 206 ~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~-~~~~i~~~y~~~ 251 (456)
T PRK10238 206 MAIIMFSFGGLELVGITAAEADNPEQSIPKATNQ-VIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHH-HHHHHHHHHHHH
Confidence 6667888889887 3444445666777766532 234455556543
No 36
>COG4059 MtrE Tetrahydromethanopterin S-methyltransferase, subunit E [Coenzyme metabolism]
Probab=42.35 E-value=22 Score=37.81 Aligned_cols=29 Identities=24% Similarity=0.605 Sum_probs=25.0
Q ss_pred cCCCcHHHHHHHHHHhhhhHhHHHHHHHH
Q 004397 507 DQGGYLPLIFAAVLMTIMYVWNNVYRRKY 535 (756)
Q Consensus 507 ~~GGW~pl~ia~v~~~iM~~W~~G~~~~~ 535 (756)
.+|||..++.++++..+..+|++--+.+.
T Consensus 259 i~~G~isiv~Gliiv~iLii~N~kvEv~A 287 (304)
T COG4059 259 IQGGWISIVAGLIIVLILIIWNRKVEVKA 287 (304)
T ss_pred cccchhhhHHHHHHHHHHHHhcchhhhhh
Confidence 48999999999999999999998655543
No 37
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=34.67 E-value=1.6e+02 Score=30.36 Aligned_cols=21 Identities=5% Similarity=0.289 Sum_probs=16.8
Q ss_pred CCcHHHHHHHHHHhhhhHhHH
Q 004397 509 GGYLPLIFAAVLMTIMYVWNN 529 (756)
Q Consensus 509 GGW~pl~ia~v~~~iM~~W~~ 529 (756)
.+|.-+++|++.+.+-+-|++
T Consensus 179 ~~~~~iiig~i~~~~~~~lkk 199 (206)
T PF06570_consen 179 PPWVYIIIGVIAFALRFYLKK 199 (206)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999988766653
No 38
>KOG3643 consensus GABA receptor [Signal transduction mechanisms]
Probab=34.32 E-value=25 Score=40.66 Aligned_cols=90 Identities=12% Similarity=0.183 Sum_probs=58.0
Q ss_pred HcCCCCceeEEecCCCcCC----ceeechhHHHHHHHhheeEEeecCchhhhhhhhhhhHHHHHHHHHHHHHHHH-----
Q 004397 404 ALGCFPHVKIVHTSSEYEG----QVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAVVFVMTLTSSYLVLIMI----- 474 (756)
Q Consensus 404 ~Lg~fPr~kI~hTS~~~~G----QIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~----- 474 (756)
+.|-.||+-+...=++..| |+|+|.+= +..+-=|..-=|-++-.+=-.+++|.+..|||++...=.-
T Consensus 225 sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~L----iVilSWVSFWin~~a~pARv~lGITTVLTMTTl~t~~n~slPrvS 300 (459)
T KOG3643|consen 225 STGNYSRLSLSFQLRRNIGFYILQTYIPSTL----IVILSWVSFWINRDASPARVALGITTVLTMTTLMTSTNESLPRVS 300 (459)
T ss_pred ccccceeEEEEEEEEeeccEEEEeeecchhh----hhHHhHhHhhhccccchhheeeceehHHhHHHHHhhhhccCCCcc
Confidence 4789999999888888777 99999751 2222222233355566666889999999999987654211
Q ss_pred HHHhcchhhhHHHHHHHHH-HHHH
Q 004397 475 MIWKSNILYVISYVLIIGS-VELI 497 (756)
Q Consensus 475 ~vW~~~~~~~~~f~~~F~~-ie~~ 497 (756)
++.-.-+.+.++|..+|++ +|-+
T Consensus 301 YVKAiDiYL~vCFvfVF~sLLEYA 324 (459)
T KOG3643|consen 301 YVKAIDVYLGVCFVFVFLSLLEYA 324 (459)
T ss_pred ceeeehhhhhHHHHHHHHHHHHHH
Confidence 1222344556677766665 4443
No 39
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=33.69 E-value=29 Score=39.49 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=25.0
Q ss_pred hHHHHhhhhhhhhcccc--cccccCCCCcccceeeeehh
Q 004397 300 AAWISLGGIILCTTGAE--ALFADVGHFTVLSIRISTCG 336 (756)
Q Consensus 300 ~~~~~LG~VvLciTGaE--ALyADlGHFg~~~Iq~aw~~ 336 (756)
.-|..+.-++.+.+|-| +.+|+==.=.+|+|..|-..
T Consensus 201 ~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~ 239 (478)
T PF00324_consen 201 GFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLL 239 (478)
T ss_pred HHHHhhhhhhcccccccccccccccCCCchhhhhhHhhh
Confidence 35667777888999999 45666555666677655444
No 40
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=29.97 E-value=17 Score=39.97 Aligned_cols=62 Identities=11% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHhc--chhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHH---HHHHhhhhHhHHHHHHHH
Q 004397 471 LIMIMIWKS--NILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFA---AVLMTIMYVWNNVYRRKY 535 (756)
Q Consensus 471 ~v~~~vW~~--~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia---~v~~~iM~~W~~G~~~~~ 535 (756)
+.|.+.|+. ++|..+.|++.|+.-=++...|.+. |=.||++++- +++|.-.++|-|-+.-..
T Consensus 124 ~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L---~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~~ 190 (381)
T PF05297_consen 124 FYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL---HQAWFTILVDLYWLLLFLAILIWLYVHDQRH 190 (381)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 345556664 7788888888777655555556554 5689999765 467888899999887654
No 41
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=27.73 E-value=33 Score=38.13 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=52.8
Q ss_pred ehhHHHHHHHHHHHhhhcccccccchhhHHHHHHHHHH-HhH-hHhhcccCcceeeecChHHHHHHHhhcchhHHHHhhh
Q 004397 230 VWISAAILVCLFLFQRLGTDKVGYTFAPILLVWFAFIA-GIG-IYNIIHYDPTVIKALNPRYIVDYFRNNQQAAWISLGG 307 (756)
Q Consensus 230 v~Is~~ILv~LF~iQr~GT~kVg~~FgPIm~vWF~~l~-~iG-iynI~~~~p~Vl~AlnP~ya~~ff~~~g~~~~~~LG~ 307 (756)
+.+.+..+..+|++|-.+....+-. -.+||+..- -+= ..-++||-|... .=+.|....|| +.|+
T Consensus 234 ialgil~i~~~f~~~~~~va~~~~~----~wL~f~~~~syiKl~mTliKYiPQa~---------mN~tRKSt~gw-sIgn 299 (372)
T KOG3145|consen 234 IALGILAIFWLFAVVFMYVAYWYVI----RWLAFLNNLSYIKLAMTLIKYIPQAY---------MNFTRKSTVGW-SIGN 299 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHh---------hcceecccccc-cccc
Confidence 3445555566888887765543221 244554432 111 224667744432 22445556788 6899
Q ss_pred hhhhhccccc-----------------ccccCCCCcccce
Q 004397 308 IILCTTGAEA-----------------LFADVGHFTVLSI 330 (756)
Q Consensus 308 VvLciTGaEA-----------------LyADlGHFg~~~I 330 (756)
|+|=+|||-| .|+|+|-||-.=+
T Consensus 300 IlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~v 339 (372)
T KOG3145|consen 300 ILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLV 339 (372)
T ss_pred EEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhH
Confidence 9999999965 6899999985543
No 42
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=24.25 E-value=34 Score=37.62 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=27.0
Q ss_pred cCCCCcccceeeeehhhHHHHHHHhhccch--hhhccCCCccc-Cc
Q 004397 321 DVGHFTVLSIRISTCGVVYPALILAYTGQA--SFLRKHPDLVS-NT 363 (756)
Q Consensus 321 DlGHFg~~~Iq~aw~~~V~PaLlL~Y~GQg--A~Ll~~p~~~~-np 363 (756)
+=++|||.+|||+|-.--=+| ||+ .=||+|||-+. ||
T Consensus 171 gk~Y~GRG~iQlsWNyNYG~a------g~alg~dLL~~Pe~V~~np 210 (286)
T KOG4742|consen 171 GKSYYGRGPIQLSWNYNYGAA------GKALGLDLLRNPELVAMNP 210 (286)
T ss_pred CCcccccCcccccccccccHh------HhhcCchhhcCcchhccCc
Confidence 457999999999998743333 543 36889999876 54
No 43
>PRK11492 hyfE hydrogenase 4 membrane subunit; Provisional
Probab=23.83 E-value=8.7e+02 Score=25.73 Aligned_cols=128 Identities=18% Similarity=0.135 Sum_probs=71.0
Q ss_pred CCCceeEEecCCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHH
Q 004397 407 CFPHVKIVHTSSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVIS 486 (756)
Q Consensus 407 ~fPr~kI~hTS~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~ 486 (756)
...|+++.+--+...|..+-+.+.-.+.+.|..++.-+....+...-+.++++.+.+...++..+. |+|.+..+.
T Consensus 79 ~~~k~~~~re~~p~i~~~~s~ll~~~~~i~s~~~~~~i~~~~~~~~~~~l~~a~~lf~iGl~~~i~-----Rrn~i~~ii 153 (216)
T PRK11492 79 AARKLGDNIEEEPVFGPAMSILLAALIVLLCAFVVQPVKLPMALGLKPALAVSLGHFLLGLLCIVS-----QRNILKQIF 153 (216)
T ss_pred HHHHhCCccccccccchHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHH
Confidence 345677765556667777777777777777777766655554455455666666666666554332 455444322
Q ss_pred HHHHHHHHHHH-HHHH-hhhcc-c----CCCcHHHHHHHHHHhhhhHhHHHHHHHHHHHHhcCCChHHHHH
Q 004397 487 YVLIIGSVELI-YLSS-VLYKF-D----QGGYLPLIFAAVLMTIMYVWNNVYRRKYFYEVEHKLSPRRIND 550 (756)
Q Consensus 487 f~~~F~~ie~~-ffsa-~l~K~-~----~GGW~pl~ia~v~~~iM~~W~~G~~~~~~~~~~~~~s~~~~~~ 550 (756)
.|..+|-. ++.. ...+- | -|--+-.+++.+++.+.. ..-++..++++.|++.+
T Consensus 154 ---g~~~meNgv~L~~~~~~~~~p~~VE~g~~~d~l~av~i~~i~a--------~~i~r~~~sid~~~l~~ 213 (216)
T PRK11492 154 ---GYCLMENGSHLTLALLAYNAPELVEIGIATDAIFAVIIMVLLA--------RKIYRTHGTLDVNKLTA 213 (216)
T ss_pred ---HHHHHHHHHHHHHHHHHhhcchhhhccccccHHHHHHHHHHHH--------HHHHHhcCCCcHHHHHh
Confidence 23333321 1211 12222 2 144566778888887777 22223456777777654
No 44
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=22.50 E-value=1e+02 Score=28.95 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCCCEEEEEEEeecccCCC
Q 004397 609 ERFIFRRVEPKELNMYRCVGRYGYMDVRD 637 (756)
Q Consensus 609 eR~~v~~~~~~~~~~~r~v~ryGy~d~~~ 637 (756)
--+.+..+...+.+.|+|.+.+|.-|..+
T Consensus 74 asL~I~nl~~sDsG~Y~C~V~~g~~~~~~ 102 (112)
T cd05900 74 ATLEITELRSNDSGTYRCEVMHGIEDNYD 102 (112)
T ss_pred cEEEEeecccccCEEEEEEEecCCCCcee
Confidence 34556677777889999999999887754
No 45
>PF11086 DUF2878: Protein of unknown function (DUF2878); InterPro: IPR021306 This bacterial family of proteins has no known function. Some members annotate the proteins as the permease component of a Mn2+/Zn2+ transport system however this cannot be confirmed.
Probab=22.17 E-value=4.8e+02 Score=26.05 Aligned_cols=82 Identities=12% Similarity=0.134 Sum_probs=57.9
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhhcccCCCcHHHHHHHHHHhhhhHhHH
Q 004397 450 IGNAYGIAVVFVMTLTSSYLVLIMIMIWKSNILYVISYVLIIGSVELIYLSSVLYKFDQGGYLPLIFAAVLMTIMYVWNN 529 (756)
Q Consensus 450 l~~AYGiAV~~~M~iTT~L~~~v~~~vW~~~~~~~~~f~~~F~~ie~~ffsa~l~K~~~GGW~pl~ia~v~~~iM~~W~~ 529 (756)
++.+++...++.+++-++.. ...+|.....++...++=..+|.......+..+++.+++|+=+.+.=...+.++++
T Consensus 19 lg~~~~~~~~~~~~~~~l~~----s~~~~~~~~~~~~~~~~G~~~D~~l~~~Gv~~f~~~~~~PlWL~~LW~~Fa~~l~~ 94 (152)
T PF11086_consen 19 LGAARALWWLALLLLLHLAL----SPQRRAELRLLLLAALLGILLDSLLLYLGVFSFPGSSLFPLWLILLWLAFATTLNH 94 (152)
T ss_pred HhhhhHHHHHHHHHHHHHHH----ccCchHHHHHHHHHHHHHHHHHHHHHHCCeeecCCCCCccHHHHHHHHHHHHHHHH
Confidence 56677777777774433332 12233344444444445566999999999999999999999999998888888887
Q ss_pred HHHHHH
Q 004397 530 VYRRKY 535 (756)
Q Consensus 530 G~~~~~ 535 (756)
.-+...
T Consensus 95 sl~wL~ 100 (152)
T PF11086_consen 95 SLAWLR 100 (152)
T ss_pred HHHHHH
Confidence 765543
No 46
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=21.51 E-value=86 Score=25.26 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=14.8
Q ss_pred HHHHhhhhHhHHHHHHHHHHHHhcCCChH
Q 004397 518 AVLMTIMYVWNNVYRRKYFYEVEHKLSPR 546 (756)
Q Consensus 518 ~v~~~iM~~W~~G~~~~~~~~~~~~~s~~ 546 (756)
.++|.....|.+-++++-++|....+|++
T Consensus 19 ~~~F~gi~~w~~~~~~k~~~e~aa~lpl~ 47 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKKRFEEAANLPLD 47 (49)
T ss_pred HHHHHHHHHHHHcccchhhHHHHHccCcc
Confidence 33444444555544444455555666665
No 47
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=20.74 E-value=1.1e+02 Score=22.96 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=20.2
Q ss_pred CCceEEEEEecCCCCCEEEEEEEee
Q 004397 607 ADERFIFRRVEPKELNMYRCVGRYG 631 (756)
Q Consensus 607 ~~eR~~v~~~~~~~~~~~r~v~ryG 631 (756)
.+..+.+..+...+.|.|+|.++.+
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~ 61 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENS 61 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecC
Confidence 3457888898888889999999754
No 48
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=20.58 E-value=1.3e+03 Score=26.20 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHhhhcccccccchhh---HHHHHHHHHHHhHhHhhcccCcce----eeecChHHHHHHHhhcchh-HH
Q 004397 231 WISAAILVCLFLFQRLGTDKVGYTFAP---ILLVWFAFIAGIGIYNIIHYDPTV----IKALNPRYIVDYFRNNQQA-AW 302 (756)
Q Consensus 231 ~Is~~ILv~LF~iQr~GT~kVg~~FgP---Im~vWF~~l~~iGiynI~~~~p~V----l~AlnP~ya~~ff~~~g~~-~~ 302 (756)
.+++++++++..+.-+|+...+++--. +.++-++.+-++|+..+...+|.. +.-+.+.- . +..++.. -+
T Consensus 128 ~~~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~g~~~~~ 204 (452)
T TIGR01773 128 LFSLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKG--G-FFPNGIGAVL 204 (452)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCC--C-cCcccHHHHH
Confidence 456667777778889998777765433 222233333445554433222221 11111100 0 1112322 23
Q ss_pred HHhhhhhhhhcccccc--cccCCCCcccceeeee
Q 004397 303 ISLGGIILCTTGAEAL--FADVGHFTVLSIRIST 334 (756)
Q Consensus 303 ~~LG~VvLciTGaEAL--yADlGHFg~~~Iq~aw 334 (756)
..+...+.+.+|-|+. .|+-=+-.+|.|..|-
T Consensus 205 ~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 238 (452)
T TIGR01773 205 LAILVTMFSFMGTEIVTIAAAESSNPIKSITRAT 238 (452)
T ss_pred HHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHH
Confidence 4556677788888864 2333334455666664
No 49
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=20.20 E-value=4.6e+02 Score=23.88 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHhhhcccCCCcHHHH-----H-HHHHHhhhhHhHHHHHHHH
Q 004397 497 IYLSSVLYKFDQGGYLPLI-----F-AAVLMTIMYVWNNVYRRKY 535 (756)
Q Consensus 497 ~ffsa~l~K~~~GGW~pl~-----i-a~v~~~iM~~W~~G~~~~~ 535 (756)
.+|...+..+.=||| |+- - |.+.|+++..|.--+..+.
T Consensus 30 ~lfa~~Ln~~~~~Gf-Plgfw~aaQGsi~~fviLi~~Ya~~mnrl 73 (81)
T PF13937_consen 30 ILFADELNQITFGGF-PLGFWFAAQGSIIVFVILIFVYAWRMNRL 73 (81)
T ss_pred HHHHHHHcCCeeCCC-ChHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 567777877777776 543 2 3444444444443333333
Done!