Query 004397
Match_columns 756
No_of_seqs 266 out of 763
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 23:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004397.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004397hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.8 0.029 1E-06 61.1 17.0 100 229-335 130-239 (511)
2 3gia_A Uncharacterized protein 96.7 0.0046 1.6E-07 66.2 9.9 105 203-319 98-208 (444)
3 3l1l_A Arginine/agmatine antip 96.3 0.027 9.2E-07 60.1 12.4 100 211-318 106-210 (445)
4 2bm3_A Type 2 cohesin, scaffol 21.2 25 0.00086 34.3 0.7 14 275-288 43-56 (166)
5 3kcp_B Cellulosome anchoring p 20.8 26 0.00089 34.7 0.7 14 275-288 55-68 (187)
6 3bwz_A Cellulosomal scaffoldin 15.6 40 0.0014 33.2 0.7 12 276-287 42-53 (181)
7 3knb_B Obscurin-like protein 1 13.5 75 0.0026 27.1 1.8 21 611-631 71-91 (107)
8 1nrp_R Receptor based peptide 13.4 62 0.0021 22.1 0.9 17 350-366 4-20 (26)
9 2rdd_B UPF0092 membrane protei 12.3 2.8E+02 0.0097 20.3 4.3 19 509-527 1-19 (37)
10 3ghp_A Cellulosomal scaffoldin 12.1 58 0.002 33.1 0.7 9 278-286 49-57 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.79 E-value=0.029 Score=61.06 Aligned_cols=100 Identities=18% Similarity=0.140 Sum_probs=55.1
Q ss_pred eehhHHHHHHHHHHHhhhcccccccchhhH----HHHHHHHHHHhHhHhhcccCccee----eecChHHHHHHHhhcchh
Q 004397 229 VVWISAAILVCLFLFQRLGTDKVGYTFAPI----LLVWFAFIAGIGIYNIIHYDPTVI----KALNPRYIVDYFRNNQQA 300 (756)
Q Consensus 229 Vv~Is~~ILv~LF~iQr~GT~kVg~~FgPI----m~vWF~~l~~iGiynI~~~~p~Vl----~AlnP~ya~~ff~~~g~~ 300 (756)
...+++++++++..+.-+|....+++..-. +++-++.+.++|++.+...+|.-+ ..+.|.+ .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 556788888888999999998777654322 122344455667766554333211 1222211 1224
Q ss_pred HHHHhhhhhhhhcccccccccCCCC--cccceeeeeh
Q 004397 301 AWISLGGIILCTTGAEALFADVGHF--TVLSIRISTC 335 (756)
Q Consensus 301 ~~~~LG~VvLciTGaEALyADlGHF--g~~~Iq~aw~ 335 (756)
.|..+..++.+.+|-|+.-.=-+-. .+|.+..|-.
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~ 239 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAML 239 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHH
Confidence 5666788899999999864333333 2455554433
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.72 E-value=0.0046 Score=66.18 Aligned_cols=105 Identities=14% Similarity=0.195 Sum_probs=56.6
Q ss_pred ccccchhhhhhhcccccccCCCCCC-eeehhHHHHHHHHHHHhhhccccccc---chhhHHHHHHHHHHHhHhHhhcccC
Q 004397 203 VLTPCISVLSAVGGIKEATSAMTED-RVVWISAAILVCLFLFQRLGTDKVGY---TFAPILLVWFAFIAGIGIYNIIHYD 278 (756)
Q Consensus 203 viTPAISVLSAVeGL~v~~p~l~~~-~Vv~Is~~ILv~LF~iQr~GT~kVg~---~FgPIm~vWF~~l~~iGiynI~~~~ 278 (756)
+++.|....+..+-+....|...++ +...+++++++++..+.-+|....++ .+..+.++=++.+.+.|+... +
T Consensus 98 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~ 174 (444)
T 3gia_A 98 VISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---H 174 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---C
Confidence 3455555555444444333332221 23457788888888999999877665 444444444444445555543 4
Q ss_pred cceeee-cChHHHHHHHhhcchh-HHHHhhhhhhhhccccccc
Q 004397 279 PTVIKA-LNPRYIVDYFRNNQQA-AWISLGGIILCTTGAEALF 319 (756)
Q Consensus 279 p~Vl~A-lnP~ya~~ff~~~g~~-~~~~LG~VvLciTGaEALy 319 (756)
|+-+.. ++| ++.. -+..+..++.+.+|-|+.-
T Consensus 175 ~~~~~~~~~~---------~g~~~~~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 175 PSYVIPDLAP---------SAVSGMIFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp GGGTSCCCSH---------HHHHHHHHHHHHGGGGGTHHHHHH
T ss_pred hhhcCCCCCC---------cchHHHHHHHHHHHHHHHhHHHHH
Confidence 443322 222 2222 2334555678889999753
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.28 E-value=0.027 Score=60.10 Aligned_cols=100 Identities=15% Similarity=0.115 Sum_probs=48.9
Q ss_pred hhhhcccccccCCCCCC-eeehhHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHhHhHhhcccCccee-eec
Q 004397 211 LSAVGGIKEATSAMTED-RVVWISAAILVCLFLFQRLGTDKVGYT---FAPILLVWFAFIAGIGIYNIIHYDPTVI-KAL 285 (756)
Q Consensus 211 LSAVeGL~v~~p~l~~~-~Vv~Is~~ILv~LF~iQr~GT~kVg~~---FgPIm~vWF~~l~~iGiynI~~~~p~Vl-~Al 285 (756)
.+..+=++...|...++ ....+++++++++..+--+|....+++ +.++.++=++.+.+.| +...+++.+ ..+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~~~~~~~ 182 (445)
T 3l1l_A 106 VIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG---WFWFRGETYMAAW 182 (445)
T ss_dssp HHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT---STTCCCCCCCCC-
T ss_pred HHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChhhccccc
Confidence 33344344334443222 134467777777888888888777765 4444333333333333 333345543 344
Q ss_pred ChHHHHHHHhhcchhHHHHhhhhhhhhcccccc
Q 004397 286 NPRYIVDYFRNNQQAAWISLGGIILCTTGAEAL 318 (756)
Q Consensus 286 nP~ya~~ff~~~g~~~~~~LG~VvLciTGaEAL 318 (756)
+|.-.- ....-+..+..++.+.+|-|+.
T Consensus 183 ~~~~~~-----~~~~~~~~~~~~~~af~G~e~~ 210 (445)
T 3l1l_A 183 NVSGLG-----TFGAIQSTLNVTLWSFIGVESA 210 (445)
T ss_dssp ---------------HHHHHHHHHHTTTTTTHH
T ss_pred CccCCc-----cHHHHHHHHHHHHHHHHhHHHH
Confidence 543110 1122344566678888999965
No 4
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=21.21 E-value=25 Score=34.30 Aligned_cols=14 Identities=50% Similarity=0.985 Sum_probs=11.3
Q ss_pred cccCcceeeecChH
Q 004397 275 IHYDPTVIKALNPR 288 (756)
Q Consensus 275 ~~~~p~Vl~AlnP~ 288 (756)
+||||+||+|.||-
T Consensus 43 IKYDP~VLqaVn~~ 56 (166)
T 2bm3_A 43 IVYDPKVLMAVDPE 56 (166)
T ss_dssp EECCTTTEEEECTT
T ss_pred EEECccceEeecCC
Confidence 46899999999883
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=20.75 E-value=26 Score=34.66 Aligned_cols=14 Identities=50% Similarity=0.985 Sum_probs=11.0
Q ss_pred cccCcceeeecChH
Q 004397 275 IHYDPTVIKALNPR 288 (756)
Q Consensus 275 ~~~~p~Vl~AlnP~ 288 (756)
+||||+||.|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 46788888888885
No 6
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=15.59 E-value=40 Score=33.22 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=7.4
Q ss_pred ccCcceeeecCh
Q 004397 276 HYDPTVIKALNP 287 (756)
Q Consensus 276 ~~~p~Vl~AlnP 287 (756)
||||+||.|+||
T Consensus 42 KYDP~VLQaV~~ 53 (181)
T 3bwz_A 42 KYDPAVLQPVTS 53 (181)
T ss_dssp ECCTTTEEEECT
T ss_pred ccChhHeeeecC
Confidence 456666666665
No 7
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=13.47 E-value=75 Score=27.11 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=15.2
Q ss_pred EEEEEecCCCCCEEEEEEEee
Q 004397 611 FIFRRVEPKELNMYRCVGRYG 631 (756)
Q Consensus 611 ~~v~~~~~~~~~~~r~v~ryG 631 (756)
+.+..+...+.|.|+|+|+-.
T Consensus 71 L~I~~v~~~D~G~Y~C~a~N~ 91 (107)
T 3knb_B 71 LLLTAALPTDAGVYVCRARNA 91 (107)
T ss_dssp EEESSCCGGGCEEEEEEEEET
T ss_pred EEEecCChhhCEEEEEEEEEC
Confidence 445666666779999999743
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=13.44 E-value=62 Score=22.12 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.5
Q ss_pred hhhhccCCCcccCcccc
Q 004397 350 ASFLRKHPDLVSNTFFK 366 (756)
Q Consensus 350 gA~Ll~~p~~~~npFy~ 366 (756)
-++|++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=12.28 E-value=2.8e+02 Score=20.27 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=9.7
Q ss_pred CCcHHHHHHHHHHhhhhHh
Q 004397 509 GGYLPLIFAAVLMTIMYVW 527 (756)
Q Consensus 509 GGW~pl~ia~v~~~iM~~W 527 (756)
|||..++.-++++.+||..
T Consensus 1 ~~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4555555445555555433
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=12.13 E-value=58 Score=33.10 Aligned_cols=9 Identities=67% Similarity=1.128 Sum_probs=3.2
Q ss_pred CcceeeecC
Q 004397 278 DPTVIKALN 286 (756)
Q Consensus 278 ~p~Vl~Aln 286 (756)
||+||.|+|
T Consensus 49 DP~vLQaVn 57 (227)
T 3ghp_A 49 DPTVLQAVN 57 (227)
T ss_dssp CTTTEEEEC
T ss_pred Chhheeccc
Confidence 333333333
Done!