Query 004397
Match_columns 756
No_of_seqs 266 out of 763
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 23:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004397.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004397hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 18.3 29 0.0021 31.6 2.7 121 339-472 11-133 (173)
2 d2bm3a1 b.2.2.2 (A:5-166) Scaf 17.0 17 0.0012 33.1 0.7 14 275-288 39-52 (162)
3 d1tyja1 b.2.2.2 (A:2-171) Cell 13.3 20 0.0015 32.8 0.2 13 276-288 38-50 (170)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 12.6 29 0.0021 26.4 0.8 38 342-381 17-54 (57)
5 d1zv9a1 b.2.2.2 (A:3-173) Cell 11.8 28 0.0021 31.8 0.7 12 276-287 40-51 (171)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 9.6 65 0.0047 25.9 2.2 26 608-633 57-82 (103)
7 d1f2qa2 b.1.1.4 (A:86-174) IgE 9.2 71 0.0051 24.6 2.2 29 607-635 47-75 (89)
8 d1f97a1 b.1.1.1 (A:27-128) Jun 8.4 74 0.0054 24.5 2.0 25 611-635 67-91 (102)
9 d2e74h1 f.23.27.1 (H:3-29) Pet 8.2 92 0.0067 19.9 1.9 20 510-529 5-24 (27)
10 d2c9aa1 b.1.1.4 (A:184-279) Re 7.2 93 0.0068 23.7 2.1 23 610-632 61-83 (96)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=18.28 E-value=29 Score=31.62 Aligned_cols=121 Identities=11% Similarity=0.032 Sum_probs=71.4
Q ss_pred HHHHHHhhccc--hhhhccCCCcccCcccccccCCchHHHHHHHHHHHHHHhhHhhhhhhHHHHHHHHcCCCCceeEEec
Q 004397 339 YPALILAYTGQ--ASFLRKHPDLVSNTFFKSVPGPVYWPMFVVAVLAAIIASQALISGTFSIIQQSLALGCFPHVKIVHT 416 (756)
Q Consensus 339 ~PaLlL~Y~GQ--gA~Ll~~p~~~~npFy~siP~~~~wP~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPr~kI~hT 416 (756)
+|-|++|.+|+ +|+++.+=|+.-+.+-. =..|.|+ ++-++--.+||+.. ++-+++++|-+-+-..
T Consensus 11 lpWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~~--- 77 (173)
T d2yvxa3 11 VRWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRDW--- 77 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSSH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchhH---
Confidence 35566666665 35666655544332211 2356776 56678888999874 7889999996432111
Q ss_pred CCCcCCceeechhHHHHHHHhheeEEeecCchhhhhhhhhhhHHHHHHHHHHHHHH
Q 004397 417 SSEYEGQVYVPEVNYLLMLACIGVTMGFRTTVKIGNAYGIAVVFVMTLTSSYLVLI 472 (756)
Q Consensus 417 S~~~~GQIYIP~VNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v 472 (756)
-+...-++.+-.+|=+.+...+.....++....++-+=|++...+|++.+++=+++
T Consensus 78 ~~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 78 RRVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11233456667777666655555444456666666666666666666666654443
No 2
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=17.02 E-value=17 Score=33.15 Aligned_cols=14 Identities=50% Similarity=0.985 Sum_probs=10.3
Q ss_pred cccCcceeeecChH
Q 004397 275 IHYDPTVIKALNPR 288 (756)
Q Consensus 275 ~~~~p~Vl~AlnP~ 288 (756)
+||||.||.|+||.
T Consensus 39 IKYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 39 IVYDPKVLMAVDPE 52 (162)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeCHHHhcccccC
Confidence 45788888888775
No 3
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=13.25 E-value=20 Score=32.76 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=7.7
Q ss_pred ccCcceeeecChH
Q 004397 276 HYDPTVIKALNPR 288 (756)
Q Consensus 276 ~~~p~Vl~AlnP~ 288 (756)
||||.||.|+||.
T Consensus 38 KYDP~vLQ~V~p~ 50 (170)
T d1tyja1 38 KYNTTYLQPWDTI 50 (170)
T ss_dssp ECCTTTEEEEETT
T ss_pred eeChHHeecccCC
Confidence 4566666666654
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.63 E-value=29 Score=26.36 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHhhccchhhhccCCCcccCcccccccCCchHHHHHHHH
Q 004397 342 LILAYTGQASFLRKHPDLVSNTFFKSVPGPVYWPMFVVAV 381 (756)
Q Consensus 342 LlL~Y~GQgA~Ll~~p~~~~npFy~siP~~~~wP~~vlAt 381 (756)
+++--++=+.|+.++... |.-|.++|+.++|-.+-+.|
T Consensus 17 i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 17 IVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 333344555577776543 33489999999997765543
No 5
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=11.82 E-value=28 Score=31.79 Aligned_cols=12 Identities=33% Similarity=0.888 Sum_probs=6.1
Q ss_pred ccCcceeeecCh
Q 004397 276 HYDPTVIKALNP 287 (756)
Q Consensus 276 ~~~p~Vl~AlnP 287 (756)
||||.||.|+||
T Consensus 40 KYDP~vLQ~V~~ 51 (171)
T d1zv9a1 40 KYDPAVLQPVTS 51 (171)
T ss_dssp ECCTTTEEEECT
T ss_pred eeChHHeeccCC
Confidence 345555555544
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.64 E-value=65 Score=25.92 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=21.6
Q ss_pred CceEEEEEecCCCCCEEEEEEEeecc
Q 004397 608 DERFIFRRVEPKELNMYRCVGRYGYM 633 (756)
Q Consensus 608 ~eR~~v~~~~~~~~~~~r~v~ryGy~ 633 (756)
+..+.+..+...+.|.|+|.|++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888888889999999998664
No 7
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.18 E-value=71 Score=24.59 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=23.3
Q ss_pred CCceEEEEEecCCCCCEEEEEEEeecccC
Q 004397 607 ADERFIFRRVEPKELNMYRCVGRYGYMDV 635 (756)
Q Consensus 607 ~~eR~~v~~~~~~~~~~~r~v~ryGy~d~ 635 (756)
....+.+..+...+-|.|+|.++.++.+.
T Consensus 47 ~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~ 75 (89)
T d1f2qa2 47 ENHNISITNATVEDSGTYYCTGKVWQLDY 75 (89)
T ss_dssp CSSEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred ccceEEEeeeeeecCcEEEEEEEeCCCCe
Confidence 44568888888888899999999887544
No 8
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.41 E-value=74 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=19.5
Q ss_pred EEEEEecCCCCCEEEEEEEeecccC
Q 004397 611 FIFRRVEPKELNMYRCVGRYGYMDV 635 (756)
Q Consensus 611 ~~v~~~~~~~~~~~r~v~ryGy~d~ 635 (756)
+.+.++...+.|.|+|.++..+.+.
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Confidence 4577788888899999998766443
No 9
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.16 E-value=92 Score=19.94 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=13.1
Q ss_pred CcHHHHHHHHHHhhhhHhHH
Q 004397 510 GYLPLIFAAVLMTIMYVWNN 529 (756)
Q Consensus 510 GW~pl~ia~v~~~iM~~W~~ 529 (756)
||+.++.-.---.-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 67777766655666777743
No 10
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.23 E-value=93 Score=23.67 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=18.1
Q ss_pred eEEEEEecCCCCCEEEEEEEeec
Q 004397 610 RFIFRRVEPKELNMYRCVGRYGY 632 (756)
Q Consensus 610 R~~v~~~~~~~~~~~r~v~ryGy 632 (756)
.+.+..+.+.+.|.|+|++.-..
T Consensus 61 ~L~I~~v~~~D~G~Y~C~a~N~~ 83 (96)
T d2c9aa1 61 SFNVVNTTKRDAGKYRCMIRTEG 83 (96)
T ss_dssp EEEECSCCGGGCSEEEEEEEETT
T ss_pred EEEECCCCHHHCeEEEEEEEeCC
Confidence 46778888888899999997543
Done!