Query 004398
Match_columns 756
No_of_seqs 208 out of 1385
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 22:45:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0700 Protein phosphatase 2C 100.0 5.8E-62 1.3E-66 519.8 19.1 128 573-756 166-295 (390)
2 KOG0698 Serine/threonine prote 99.9 3.6E-23 7.8E-28 219.0 16.6 107 575-753 113-225 (330)
3 PF00481 PP2C: Protein phospha 99.9 1.9E-22 4.2E-27 203.2 15.4 109 575-753 70-180 (254)
4 PLN03145 Protein phosphatase 2 99.9 1.4E-21 3.1E-26 210.3 17.5 107 576-753 139-245 (365)
5 PTZ00224 protein phosphatase 2 99.8 6.3E-19 1.4E-23 191.1 14.3 99 580-754 86-185 (381)
6 KOG0697 Protein phosphatase 1B 99.7 9.5E-17 2.1E-21 167.3 8.8 112 572-753 93-204 (379)
7 KOG0699 Serine/threonine prote 99.6 9.1E-16 2E-20 164.2 6.8 84 606-754 328-411 (542)
8 COG0631 PTC1 Serine/threonine 99.4 1.5E-13 3.2E-18 142.0 7.8 104 576-752 80-183 (262)
9 smart00332 PP2Cc Serine/threon 99.4 3.7E-12 8.1E-17 125.6 12.6 108 575-752 73-180 (255)
10 cd00143 PP2Cc Serine/threonine 99.4 8.6E-12 1.9E-16 122.1 13.2 110 573-752 68-177 (254)
11 KOG1323 Serine/threonine phosp 99.2 5.9E-11 1.3E-15 126.9 10.7 62 571-639 214-277 (493)
12 PRK14559 putative protein seri 99.2 5.7E-11 1.2E-15 136.9 10.5 60 577-638 455-514 (645)
13 PF13672 PP2C_2: Protein phosp 97.2 0.0014 3.1E-08 64.2 8.4 34 604-637 93-126 (212)
14 KOG0618 Serine/threonine phosp 96.2 0.0038 8.1E-08 75.3 3.9 78 608-751 609-696 (1081)
15 smart00331 PP2C_SIG Sigma fact 95.1 0.054 1.2E-06 52.4 6.5 32 606-637 83-116 (193)
16 KOG1379 Serine/threonine prote 92.9 0.21 4.6E-06 54.7 6.5 32 607-638 166-199 (330)
17 PF07228 SpoIIE: Stage II spor 80.2 8.8 0.00019 37.0 8.3 31 608-638 60-92 (193)
18 smart00332 PP2Cc Serine/threon 73.6 6.6 0.00014 39.2 5.6 46 289-334 18-63 (255)
19 cd00143 PP2Cc Serine/threonine 72.7 6 0.00013 39.2 5.0 47 290-336 14-61 (254)
20 PF08682 DUF1780: Protein of u 67.5 0.9 1.9E-05 46.3 -2.0 18 314-331 183-200 (208)
21 COG0631 PTC1 Serine/threonine 49.2 29 0.00062 36.8 5.2 46 290-336 22-69 (262)
22 PF05053 Menin: Menin; InterP 41.7 13 0.00028 44.1 1.4 22 291-313 169-190 (618)
23 KOG0697 Protein phosphatase 1B 34.4 38 0.00082 37.6 3.4 30 303-332 51-80 (379)
24 TIGR02865 spore_II_E stage II 31.4 1.7E+02 0.0036 36.1 8.4 32 607-638 634-667 (764)
25 PF06347 SH3_4: Bacterial SH3 28.2 53 0.0011 26.5 2.5 21 294-316 26-46 (55)
26 PF06296 DUF1044: Protein of u 25.8 79 0.0017 30.7 3.6 31 282-312 45-78 (120)
No 1
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-62 Score=519.81 Aligned_cols=128 Identities=55% Similarity=0.850 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCcccc
Q 004398 573 HDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (756)
Q Consensus 573 h~~VlrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~ 652 (756)
|.+|++||.+||++||++|++++++++..+|++|.|||||||++|++.+|||||+|||||||++....+
T Consensus 166 ~~~v~~al~~Af~~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~~~~----------- 234 (390)
T KOG0700|consen 166 HGDVLEALSKAFEATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVENNG----------- 234 (390)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceecCCC-----------
Confidence 778999999999999999999999999999999999999999999999999999999999998876321
Q ss_pred ccccccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004398 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (756)
Q Consensus 653 ~g~r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ 732 (756)
..|.|+|||+||++++++|++||+++||||+++|+
T Consensus 235 ---------------------------------------------~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv 269 (390)
T KOG0700|consen 235 ---------------------------------------------SWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVV 269 (390)
T ss_pred ---------------------------------------------CeEEEEecChhhccccHHHHHHHHHhCCCCcceEe
Confidence 12689999999999999999999999999999999
Q ss_pred cC--cccCccccccccccCCccccCC
Q 004398 733 ND--RVKGQLKVTRAFGAGFLKKVGW 756 (756)
Q Consensus 733 nd--RVkG~LaVTRAFGDg~LKqPk~ 756 (756)
++ ||||.|+|||||||++||+|+|
T Consensus 270 ~~~~RvkG~L~vsRAfGd~~lK~~~~ 295 (390)
T KOG0700|consen 270 NKHWRVKGILQVSRAFGDGYLKWPEF 295 (390)
T ss_pred eccceeeEEEEeeeeccceeecchhh
Confidence 98 9999999999999999999997
No 2
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=3.6e-23 Score=218.95 Aligned_cols=107 Identities=41% Similarity=0.515 Sum_probs=91.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECC-eEEEEEcCcceEEEEecCCCCCCCCCCCcccc
Q 004398 575 AVLRAMAQALE-STEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQ-DVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (756)
Q Consensus 575 ~VlrAL~rAf~-~TEeafLemadk~l~enpeLalmGSTaLVmLIkde-dVYVANVGDSRAVLar~~~~~~~pn~~~~k~~ 652 (756)
++..||.+||. +++.+|++. ......+|||+++++++++ ++||||||||||||++.+.
T Consensus 113 ~~~~a~~~~F~~~~D~~~~~~-------~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~~------------- 172 (330)
T KOG0698|consen 113 DVKDALRRAFLTKTDSEFLEK-------REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKGG------------- 172 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-------ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCCC-------------
Confidence 46669999999 699999764 1224568999999999955 9999999999999998741
Q ss_pred ccccccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004398 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (756)
Q Consensus 653 ~g~r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ 732 (756)
.+++||.||+|+.++|+.||++.+ +.|.
T Consensus 173 ------------------------------------------------~a~~Ls~DHkP~~~~E~~RI~~~G----G~v~ 200 (330)
T KOG0698|consen 173 ------------------------------------------------VAVQLSVDHKPDREDERERIEAAG----GRVS 200 (330)
T ss_pred ------------------------------------------------eeeeCCCCCCCCcHHHHHHHHHcC----CEEE
Confidence 588999999999999999999999 5555
Q ss_pred c----CcccCccccccccccCCccc
Q 004398 733 N----DRVKGQLKVTRAFGAGFLKK 753 (756)
Q Consensus 733 n----dRVkG~LaVTRAFGDg~LKq 753 (756)
+ +||.|.|+|||||||..||.
T Consensus 201 ~~~~~~Rv~G~LavsRa~GD~~~k~ 225 (330)
T KOG0698|consen 201 NWGGVWRVNGVLAVSRAFGDVELKS 225 (330)
T ss_pred EcCCcceEeceEEEeeecCCHHhcC
Confidence 3 49999999999999999994
No 3
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=99.89 E-value=1.9e-22 Score=203.16 Aligned_cols=109 Identities=38% Similarity=0.457 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCccccc
Q 004398 575 AVLRAMAQALES-TEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDS 653 (756)
Q Consensus 575 ~VlrAL~rAf~~-TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~ 653 (756)
.+.+||..||.+ +++.+...... + +...+||||+|++|.++++||||||||||||++...
T Consensus 70 ~~~~al~~a~~~~~~~~~~~~~~~----~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~~-------------- 130 (254)
T PF00481_consen 70 DIEEALRQAFLAFTDESLYSDSEN----N-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNGG-------------- 130 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----H-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETTE--------------
T ss_pred chhhcccceeeecccccccccccc----c-ccccccccccccccccceeEEEeeeeeeeeeeeccc--------------
Confidence 466789999999 88888653221 2 446799999999999999999999999999999861
Q ss_pred cccccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCcee-
Q 004398 654 RHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF- 732 (756)
Q Consensus 654 g~r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~- 732 (756)
...+||+||+|+.++|+.||++.|+ .+.
T Consensus 131 -----------------------------------------------~~~~Lt~dH~~~~~~E~~RI~~~gg----~v~~ 159 (254)
T PF00481_consen 131 -----------------------------------------------IIKQLTRDHKPSNPDERERIRKAGG----RVSE 159 (254)
T ss_dssp -----------------------------------------------EEEESS---STTSHHHHHHHHHTT-----GEEE
T ss_pred -----------------------------------------------cccccccccccchhhccceeecccc----cccc
Confidence 1159999999999999999999994 444
Q ss_pred cCcccCccccccccccCCccc
Q 004398 733 NDRVKGQLKVTRAFGAGFLKK 753 (756)
Q Consensus 733 ndRVkG~LaVTRAFGDg~LKq 753 (756)
++||.|.|+|||||||..+|+
T Consensus 160 ~~rv~g~l~~sRalGd~~~k~ 180 (254)
T PF00481_consen 160 NGRVNGVLAVSRALGDFDLKP 180 (254)
T ss_dssp TEEETTTBSSSB-EE-GGGTT
T ss_pred chhhhhccccccccccccccc
Confidence 899999999999999999998
No 4
>PLN03145 Protein phosphatase 2c; Provisional
Probab=99.87 E-value=1.4e-21 Score=210.34 Aligned_cols=107 Identities=28% Similarity=0.452 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCccccccc
Q 004398 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRH 655 (756)
Q Consensus 576 VlrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~g~ 655 (756)
+.+||.+||.+++++|++... .+. ...||||++++||.++.+||||||||||||++.+
T Consensus 139 ~~~al~~af~~~d~~~~~~~~----~~~-~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g----------------- 196 (365)
T PLN03145 139 IEKVVSSAFLQTDTAFAEACS----LDA-SLASGTTALAALVVGRSLVVANAGDCRAVLCRRG----------------- 196 (365)
T ss_pred HHHHHHHHHHHHhHHHHhhhc----ccc-CCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC-----------------
Confidence 445788999999999865432 122 2349999999999999999999999999999865
Q ss_pred cccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCceecCc
Q 004398 656 KNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDR 735 (756)
Q Consensus 656 r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ndR 735 (756)
+++|||+||++..+.|++||++.+ ..|.++|
T Consensus 197 ---------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~G----g~v~~g~ 227 (365)
T PLN03145 197 ---------------------------------------------KAIEMSRDHKPMCSKERKRIEASG----GYVYDGY 227 (365)
T ss_pred ---------------------------------------------eEEEecCCCCCCCHHHHHHHHHcC----Cceecce
Confidence 578999999999999999999988 6677889
Q ss_pred ccCccccccccccCCccc
Q 004398 736 VKGQLKVTRAFGAGFLKK 753 (756)
Q Consensus 736 VkG~LaVTRAFGDg~LKq 753 (756)
+.|.|.|||||||..+|.
T Consensus 228 v~g~l~vTRalGD~~~k~ 245 (365)
T PLN03145 228 LNGQLNVARALGDWHMEG 245 (365)
T ss_pred ECCccccccccccccccc
Confidence 999999999999998874
No 5
>PTZ00224 protein phosphatase 2C; Provisional
Probab=99.79 E-value=6.3e-19 Score=191.09 Aligned_cols=99 Identities=30% Similarity=0.383 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEE-CCeEEEEEcCcceEEEEecCCCCCCCCCCCcccccccccc
Q 004398 580 MAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMK-DQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNR 658 (756)
Q Consensus 580 L~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIk-dedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~g~r~~ 658 (756)
|.++|..++++|++.. ...|||+++++|. +..+||||||||||||++.+
T Consensus 86 l~~a~~~~d~~i~~~~----------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g-------------------- 135 (381)
T PTZ00224 86 MEELCLEIDEEWMDSG----------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG-------------------- 135 (381)
T ss_pred HHHHHHHHHHHHHhcc----------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC--------------------
Confidence 5667778888886421 1359999988876 68999999999999999854
Q ss_pred chhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCceecCcccC
Q 004398 659 SRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKG 738 (756)
Q Consensus 659 Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ndRVkG 738 (756)
++.|||+||++.++.|+.||++++ ..+..+||.|
T Consensus 136 ------------------------------------------~~~~LT~DH~~~~~~E~~RI~~~g----g~v~~~Rv~G 169 (381)
T PTZ00224 136 ------------------------------------------KLVFATEDHKPNNPGERQRIEACG----GRVVSNRVDG 169 (381)
T ss_pred ------------------------------------------EEEEcccCCCCCCHHHHhHHHHcc----CEeccccccC
Confidence 578999999999999999999887 5667789999
Q ss_pred ccccccccccCCcccc
Q 004398 739 QLKVTRAFGAGFLKKV 754 (756)
Q Consensus 739 ~LaVTRAFGDg~LKqP 754 (756)
.|.|||||||..||.+
T Consensus 170 ~l~vTRalGd~~~K~~ 185 (381)
T PTZ00224 170 DLAVSRAFGDRSFKVK 185 (381)
T ss_pred ceeeecccCCcccccc
Confidence 9999999999988865
No 6
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=99.67 E-value=9.5e-17 Score=167.31 Aligned_cols=112 Identities=26% Similarity=0.384 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCccc
Q 004398 572 DHDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKD 651 (756)
Q Consensus 572 ~h~~VlrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~ 651 (756)
+-+.+.+-|+..|.++++.+..+.+. ..+...+||||+++++...++|++|+|||||||++.+
T Consensus 93 sv~~~~~GIrtGFL~iDE~mr~~~~~----~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng------------- 155 (379)
T KOG0697|consen 93 SVENVEKGIRTGFLSIDEIMRTLSDI----SKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG------------- 155 (379)
T ss_pred cHHHHHhhHhhcceeHHHHHhhhhhh----hcccccCCceEEEEEecCceEEEEecCcchhheecCC-------------
Confidence 45578889999999998887544332 2233348999999999999999999999999999987
Q ss_pred cccccccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCce
Q 004398 652 DSRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAV 731 (756)
Q Consensus 652 ~~g~r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I 731 (756)
.++--|.||+|..|.|++||.+++ +.|
T Consensus 156 -------------------------------------------------~~~f~TqDHKP~~p~EkeRIqnAG----GSV 182 (379)
T KOG0697|consen 156 -------------------------------------------------EVVFSTQDHKPYLPKEKERIQNAG----GSV 182 (379)
T ss_pred -------------------------------------------------ceEEeccCCCCCChHHHHHHhcCC----CeE
Confidence 355669999999999999999999 788
Q ss_pred ecCcccCccccccccccCCccc
Q 004398 732 FNDRVKGQLKVTRAFGAGFLKK 753 (756)
Q Consensus 732 ~ndRVkG~LaVTRAFGDg~LKq 753 (756)
+-.||+|.|+|+|||||+.||.
T Consensus 183 MIqRvNGsLAVSRAlGDydyK~ 204 (379)
T KOG0697|consen 183 MIQRVNGSLAVSRALGDYDYKN 204 (379)
T ss_pred EEEEecceeeeehhccCccccc
Confidence 8899999999999999999996
No 7
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.60 E-value=9.1e-16 Score=164.23 Aligned_cols=84 Identities=37% Similarity=0.521 Sum_probs=78.0
Q ss_pred cCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCccccccccccchhhhHhhhhhcccccCCccccchhhh
Q 004398 606 ALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHNQNCQVN 685 (756)
Q Consensus 606 almGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~g~r~~Sr~~~~~~eleri~eES~~~~~~~e~~ 685 (756)
..+|||++|+|+.+.+|||||.||||+||++.+
T Consensus 328 ~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G----------------------------------------------- 360 (542)
T KOG0699|consen 328 EDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG----------------------------------------------- 360 (542)
T ss_pred CCCCceEEEEEecCceEEEecCCCcceEEecCC-----------------------------------------------
Confidence 458999999999999999999999999999976
Q ss_pred cccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCceecCcccCccccccccccCCcccc
Q 004398 686 MMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDRVKGQLKVTRAFGAGFLKKV 754 (756)
Q Consensus 686 ~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ndRVkG~LaVTRAFGDg~LKqP 754 (756)
+|+.|+.||+|..+.|..||.++++ ++-..+||+|.|.++|||||++||+-
T Consensus 361 ---------------kAvdmS~DHKPEDevE~~RI~~AGG---~vtlDGRVNGGLNLSRA~GDHaYK~N 411 (542)
T KOG0699|consen 361 ---------------KAVDMSVDHKPEDEVETNRIHAAGG---QVTLDGRVNGGLNLSRAFGDHAYKKN 411 (542)
T ss_pred ---------------ceeecccCCCcccHHHHHHHHhcCC---eEeecceecCccchhhhhhhhhhhcc
Confidence 6889999999999999999999993 56669999999999999999999974
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.44 E-value=1.5e-13 Score=141.97 Aligned_cols=104 Identities=30% Similarity=0.366 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCccccccc
Q 004398 576 VLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRH 655 (756)
Q Consensus 576 VlrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~g~ 655 (756)
+.+.|.+++..+++.+..... .+.+...||||++++++.++++||||||||||||++.+
T Consensus 80 ~~~~l~~~~~~~n~~i~~~~~----~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~----------------- 138 (262)
T COG0631 80 LEELLKEAILKANEAIAEEGQ----LNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG----------------- 138 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhh----cccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC-----------------
Confidence 677999999999999976543 35566789999999999999999999999999999986
Q ss_pred cccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCceecCc
Q 004398 656 KNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFNDR 735 (756)
Q Consensus 656 r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ndR 735 (756)
.+.|||.||++..+.|++||...+ .++...|
T Consensus 139 ---------------------------------------------~~~~lT~DH~~~~~~~~~~~~~~~----~~~~~~~ 169 (262)
T COG0631 139 ---------------------------------------------ELKQLTEDHSLVNRLEQRGIITPE----EARSHPR 169 (262)
T ss_pred ---------------------------------------------ceEEeccCCcHHHHHHHhcCCCHH----HHHhCcc
Confidence 578999999999999999977654 2222233
Q ss_pred ccCccccccccccCCcc
Q 004398 736 VKGQLKVTRAFGAGFLK 752 (756)
Q Consensus 736 VkG~LaVTRAFGDg~LK 752 (756)
.. ++|||||+..+-
T Consensus 170 ~~---~ltralG~~~~~ 183 (262)
T COG0631 170 RN---ALTRALGDFDLL 183 (262)
T ss_pred ch---hhhhhcCCCccc
Confidence 32 899999998853
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.38 E-value=3.7e-12 Score=125.63 Aligned_cols=108 Identities=43% Similarity=0.562 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCcccccc
Q 004398 575 AVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSR 654 (756)
Q Consensus 575 ~VlrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~g 654 (756)
.+.++|.+++.++++.++..... ......||||++++++..+.+|++||||||+|+.+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------- 132 (255)
T smart00332 73 DVEEALRKAFLKTDEEILEELES----LEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------- 132 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC----------------
Confidence 47778999999999999765443 2245679999999999999999999999999999864
Q ss_pred ccccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCceecC
Q 004398 655 HKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVFND 734 (756)
Q Consensus 655 ~r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~nd 734 (756)
...+||.||++..+.|..||...+ ..+..+
T Consensus 133 ----------------------------------------------~~~~lt~dh~~~~~~~~~~i~~~~----~~~~~~ 162 (255)
T smart00332 133 ----------------------------------------------KAVQLTEDHKPSNEDERARIEAAG----GFVING 162 (255)
T ss_pred ----------------------------------------------ceeEcCCCCCCcCHHHHHHHHHcC----CEEECC
Confidence 346999999999999999999988 456667
Q ss_pred cccCccccccccccCCcc
Q 004398 735 RVKGQLKVTRAFGAGFLK 752 (756)
Q Consensus 735 RVkG~LaVTRAFGDg~LK 752 (756)
+..+.+.+||++|+..+|
T Consensus 163 ~~~~~~~lt~~~g~~~~~ 180 (255)
T smart00332 163 RVNGVLALSRAIGDFFLK 180 (255)
T ss_pred eECCeEecccccCCHhhc
Confidence 888999999999998765
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.35 E-value=8.6e-12 Score=122.12 Aligned_cols=110 Identities=38% Similarity=0.526 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecCCCCCCCCCCCcccc
Q 004398 573 HDAVLRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERPNDRHPNPSFLKDD 652 (756)
Q Consensus 573 h~~VlrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~~~~~~pn~~~~k~~ 652 (756)
...+..+|.++|+++++.+...... ++....+|||++++++.++.+|++||||||+|+.+..
T Consensus 68 ~~~~~~~l~~~~~~~~~~l~~~~~~----~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~-------------- 129 (254)
T cd00143 68 EEDIEEALRKAFLRADEEILEEAQD----EPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG-------------- 129 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhh----ccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC--------------
Confidence 3457788999999999999765432 2455679999999999999999999999999998765
Q ss_pred ccccccchhhhHhhhhhcccccCCccccchhhhcccccchhhhhccccceeecCCCCCCCcHHHHHHHHHcCCCCCCcee
Q 004398 653 SRHKNRSRESLVRMELDRISEESPMHNQNCQVNMMNKNRDISICRLKMRAVQLSTDHSTSVEEEIIRIKAEHPDDSQAVF 732 (756)
Q Consensus 653 ~g~r~~Sr~~~~~~eleri~eES~~~~~~~e~~~~n~~~e~~~~~~~l~AlQLT~DHSps~eEEr~RIkaehPDd~~~I~ 732 (756)
...|||.||++..+.|+.||...++ .+.
T Consensus 130 ------------------------------------------------~~~~lt~dh~~~~~~~~~~i~~~~~----~~~ 157 (254)
T cd00143 130 ------------------------------------------------EAVQLTKDHKPVNEEERERIEKAGG----RVS 157 (254)
T ss_pred ------------------------------------------------ceeEcCCCCCCcChHHHHHHHHcCC----cEE
Confidence 4679999999999999999999884 333
Q ss_pred cCcccCccccccccccCCcc
Q 004398 733 NDRVKGQLKVTRAFGAGFLK 752 (756)
Q Consensus 733 ndRVkG~LaVTRAFGDg~LK 752 (756)
..++.+...+||+||+..+|
T Consensus 158 ~~~~~~~~~~t~~lG~~~~~ 177 (254)
T cd00143 158 NGRVPGVLAVTRALGDFDLK 177 (254)
T ss_pred eCEEcCceeeccccCCcccc
Confidence 56788889999999999765
No 11
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.20 E-value=5.9e-11 Score=126.93 Aligned_cols=62 Identities=31% Similarity=0.428 Sum_probs=48.6
Q ss_pred CCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc-cCCCceEEEEEEECCeEEEEEcCcceEEEEecCC
Q 004398 571 IDHD-AVLRAMAQALESTEEAYMEMVEKALDTNPEL-ALMGSCVLVMLMKDQDVYVMNLGDSRAILAQERP 639 (756)
Q Consensus 571 ~~h~-~VlrAL~rAf~~TEeafLemadk~l~enpeL-almGSTaLVmLIkdedVYVANVGDSRAVLar~~~ 639 (756)
+.|+ .|.-||..||+..++.+-.. .... ...||||+|++.--.+|||||.|||||||.+.++
T Consensus 214 Ir~E~LViGAlEsAFqemDeqiare-------r~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnde 277 (493)
T KOG1323|consen 214 IRHEHLVIGALESAFQEMDEQIARE-------RQVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRNDE 277 (493)
T ss_pred CchHHhhHHHHHHHHHHHHHHHHHH-------HHhhcCCCCceEEEeeeeccceEEccCCCceEEEEecCC
Confidence 5555 58889999998888887321 1111 2358899999999999999999999999999874
No 12
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.19 E-value=5.7e-11 Score=136.88 Aligned_cols=60 Identities=22% Similarity=0.362 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCccCCCceEEEEEEECCeEEEEEcCcceEEEEecC
Q 004398 577 LRAMAQALESTEEAYMEMVEKALDTNPELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQER 638 (756)
Q Consensus 577 lrAL~rAf~~TEeafLemadk~l~enpeLalmGSTaLVmLIkdedVYVANVGDSRAVLar~~ 638 (756)
.++|.+||..+++++.++..+. ...+...||||+++++|.++.+||+||||||||+.++.
T Consensus 455 ~~~L~~ai~~AN~~I~~~~~~~--~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~ 514 (645)
T PRK14559 455 EETIREAIYLANEAIYDLNQQN--ARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRK 514 (645)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc--ccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecC
Confidence 3578899999999997655432 12255679999999999999999999999999998653
No 13
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=97.18 E-value=0.0014 Score=64.17 Aligned_cols=34 Identities=32% Similarity=0.654 Sum_probs=26.8
Q ss_pred CccCCCceEEEEEEECCeEEEEEcCcceEEEEec
Q 004398 604 ELALMGSCVLVMLMKDQDVYVMNLGDSRAILAQE 637 (756)
Q Consensus 604 eLalmGSTaLVmLIkdedVYVANVGDSRAVLar~ 637 (756)
....++||++++++.++.++++||||||+++...
T Consensus 93 ~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~ 126 (212)
T PF13672_consen 93 ELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRR 126 (212)
T ss_dssp GGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEE
T ss_pred cccccCceEEEEEEECCEEEEEEECCCeEEEEEC
Confidence 4456899999999999999999999999976554
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.20 E-value=0.0038 Score=75.33 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=59.1
Q ss_pred CCceEEEEEEEC--------CeEEEEEcCcceEEEEecCCCCCCCCCCCccccccccccchhhhHhhhhhcccccCCccc
Q 004398 608 MGSCVLVMLMKD--------QDVYVMNLGDSRAILAQERPNDRHPNPSFLKDDSRHKNRSRESLVRMELDRISEESPMHN 679 (756)
Q Consensus 608 mGSTaLVmLIkd--------edVYVANVGDSRAVLar~~~~~~~pn~~~~k~~~g~r~~Sr~~~~~~eleri~eES~~~~ 679 (756)
-|..++.+.|.. ..+++||||+|-||+++.+.
T Consensus 609 lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~---------------------------------------- 648 (1081)
T KOG0618|consen 609 LGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGK---------------------------------------- 648 (1081)
T ss_pred ccchhhheeecccccCcccchhhhHhhhccchhhhhhcCC----------------------------------------
Confidence 456666777763 34899999999999999872
Q ss_pred cchhhhcccccchhhhhccccceeecCCC-CCCCcHHHHHHHHHcCCCCCCcee-cCcccCccccccccccCCc
Q 004398 680 QNCQVNMMNKNRDISICRLKMRAVQLSTD-HSTSVEEEIIRIKAEHPDDSQAVF-NDRVKGQLKVTRAFGAGFL 751 (756)
Q Consensus 680 ~~~e~~~~n~~~e~~~~~~~l~AlQLT~D-HSps~eEEr~RIkaehPDd~~~I~-ndRVkG~LaVTRAFGDg~L 751 (756)
.+++|+- |....++|.+||+..+ ++|. ++++.|...+||++|-.++
T Consensus 649 ----------------------~~p~t~~~~~~v~~eE~~RI~~~~----g~i~ed~k~ngvt~~tR~iG~~~l 696 (1081)
T KOG0618|consen 649 ----------------------PLPTTRSPMLEVDREEYKRIVDSK----GFITEDNKLNGVTSSTRAIGPFSL 696 (1081)
T ss_pred ----------------------cCcccccccccCCHHHHHHHHHhc----CeecCCCeeeceeeeeeecccccc
Confidence 1233333 2334789999999988 6666 7899999999999998775
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=95.07 E-value=0.054 Score=52.44 Aligned_cols=32 Identities=19% Similarity=0.161 Sum_probs=28.4
Q ss_pred cCCCceEEEEEE--ECCeEEEEEcCcceEEEEec
Q 004398 606 ALMGSCVLVMLM--KDQDVYVMNLGDSRAILAQE 637 (756)
Q Consensus 606 almGSTaLVmLI--kdedVYVANVGDSRAVLar~ 637 (756)
..+|+|++++++ ..+.++++|+||+|+++.+.
T Consensus 83 ~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~ 116 (193)
T smart00331 83 DGMFATLFLALYDFAGGTLSYANAGHSPPYLLRA 116 (193)
T ss_pred CCcEEEEEEEEEECCCCEEEEEeCCCCceEEEEC
Confidence 358999999988 68899999999999999984
No 16
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=92.92 E-value=0.21 Score=54.71 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=27.9
Q ss_pred CCCceEEEEEEE--CCeEEEEEcCcceEEEEecC
Q 004398 607 LMGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (756)
Q Consensus 607 lmGSTaLVmLIk--dedVYVANVGDSRAVLar~~ 638 (756)
+-+|||+|++|. +..||+||+|||=..+.|.+
T Consensus 166 vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G 199 (330)
T KOG1379|consen 166 VGSSTACILALDRENGKLHTANLGDSGFLVVREG 199 (330)
T ss_pred CCcceeeeeeeecCCCeEEEeeccCcceEEEECC
Confidence 456799999998 99999999999988888875
No 17
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=80.22 E-value=8.8 Score=36.96 Aligned_cols=31 Identities=10% Similarity=0.105 Sum_probs=26.5
Q ss_pred CCceEEEEEEE--CCeEEEEEcCcceEEEEecC
Q 004398 608 MGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (756)
Q Consensus 608 mGSTaLVmLIk--dedVYVANVGDSRAVLar~~ 638 (756)
+..|++++++. .+.++++|+|++++++.+..
T Consensus 60 ~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~ 92 (193)
T PF07228_consen 60 RYATACYAIIDPETGTLTYANAGHPPPLLLRPG 92 (193)
T ss_dssp TTEEEEEEEEETTTTEEEEEEESSSEEEEEETT
T ss_pred ccceEEEEEecccceEEEEeCCCCCCEEEEecc
Confidence 67788888766 77799999999999999984
No 18
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=73.63 E-value=6.6 Score=39.24 Aligned_cols=46 Identities=28% Similarity=0.468 Sum_probs=37.3
Q ss_pred ccCCceEEEEEecccceEEEEEecCCCCCChhHHHHHHHHHHHHHH
Q 004398 289 KAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKE 334 (756)
Q Consensus 289 kAGEDRVhvv~SEe~GWlFvGIYDGFnGpDApdfL~~~LY~ai~~e 334 (756)
+-.||++.+......++.+++|+||..|..|.+|+...+-..+.+.
T Consensus 18 ~~neD~~~~~~~~~~~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~ 63 (255)
T smart00332 18 KPMEDAHVITPDLSDSGAFFGVFDGHGGSEAAKFLSKNLPEILAEE 63 (255)
T ss_pred CCCcceEEEeccCCCCeEEEEEEeCCCcHHHHHHHHHHHHHHHHHh
Confidence 5678888776554468999999999999999999998887766543
No 19
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=72.68 E-value=6 Score=39.17 Aligned_cols=47 Identities=28% Similarity=0.404 Sum_probs=36.5
Q ss_pred cCCceEEEEEecc-cceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004398 290 AGEDRVHVVLSEE-QGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (756)
Q Consensus 290 AGEDRVhvv~SEe-~GWlFvGIYDGFnGpDApdfL~~~LY~ai~~eL~ 336 (756)
-.||++-+..... .+|.+++|.||.+|.....+....+-+++.+++.
T Consensus 14 ~neD~~~~~~~~~~~~~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~ 61 (254)
T cd00143 14 TNEDAVVIKPNLNNEDGGLFGVFDGHGGHAAGEFASKLLVEELLEELE 61 (254)
T ss_pred CCcceEEEeccCCCCCcEEEEEEcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 4799977643221 3899999999999998888888888887777665
No 20
>PF08682 DUF1780: Protein of unknown function (DUF1780); InterPro: IPR014796 This is a family of uncharacterised proteins. The structure of a hypothetical protein from Pseudomonas aeruginosa has shown it to adopt an alpha/beta fold. ; PDB: 1Y0K_A.
Probab=67.46 E-value=0.9 Score=46.27 Aligned_cols=18 Identities=67% Similarity=1.040 Sum_probs=12.4
Q ss_pred CCCCChhHHHHHHHHHHH
Q 004398 314 FSGPDAPDFLMSHLYRAI 331 (756)
Q Consensus 314 FnGpDApdfL~~~LY~ai 331 (756)
|-||||||||.+||=+.|
T Consensus 183 FAhpdAP~fLr~nlGrsi 200 (208)
T PF08682_consen 183 FAHPDAPDFLRSNLGRSI 200 (208)
T ss_dssp EE-TTS-HHHHTTTT--E
T ss_pred ecCCCchHHHHhccCcee
Confidence 679999999999987654
No 21
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=49.17 E-value=29 Score=36.77 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=34.8
Q ss_pred cCCceEEEEE--ecccceEEEEEecCCCCCChhHHHHHHHHHHHHHHHh
Q 004398 290 AGEDRVHVVL--SEEQGWLFIGIYDGFSGPDAPDFLMSHLYRAIDKELE 336 (756)
Q Consensus 290 AGEDRVhvv~--SEe~GWlFvGIYDGFnGpDApdfL~~~LY~ai~~eL~ 336 (756)
..||..-+.. .+.+ ++|++|+||..|..|-++.-+.+-..+-++++
T Consensus 22 ~NeD~~~~~~~~~~~~-~~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~ 69 (262)
T COG0631 22 HNEDAFLIKPNENGNL-LLLFAVADGMGGHAAGEVASKLAVEALARLFD 69 (262)
T ss_pred CCCcceeeccccCCcc-eeEEEEEeCccchhHHHHHHHHHHHHHHHHHH
Confidence 4455554443 2334 89999999999999999999888777777655
No 22
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=41.66 E-value=13 Score=44.11 Aligned_cols=22 Identities=45% Similarity=0.946 Sum_probs=15.2
Q ss_pred CCceEEEEEecccceEEEEEecC
Q 004398 291 GEDRVHVVLSEEQGWLFIGIYDG 313 (756)
Q Consensus 291 GEDRVhvv~SEe~GWlFvGIYDG 313 (756)
|-..||.++||+|.|+..|= ||
T Consensus 169 g~~dvhLalSeDHawv~fg~-d~ 190 (618)
T PF05053_consen 169 GYKDVHLALSEDHAWVVFGK-DG 190 (618)
T ss_dssp T-TT-EEEE-SS-EEEEESC-CC
T ss_pred CcchheeeecCCceEEEecC-CC
Confidence 45589999999999999986 54
No 23
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=34.37 E-value=38 Score=37.61 Aligned_cols=30 Identities=27% Similarity=0.679 Sum_probs=27.6
Q ss_pred cceEEEEEecCCCCCChhHHHHHHHHHHHH
Q 004398 303 QGWLFIGIYDGFSGPDAPDFLMSHLYRAID 332 (756)
Q Consensus 303 ~GWlFvGIYDGFnGpDApdfL~~~LY~ai~ 332 (756)
-.|-|+++|||+-|---..|-..||...|.
T Consensus 51 ~dWSfFAVfDGHAGs~va~~c~~hLlehi~ 80 (379)
T KOG0697|consen 51 EDWSFFAVFDGHAGSQVANHCAEHLLEHII 80 (379)
T ss_pred cCceEEEEEcCccchHHHHHHHHHHHHHhh
Confidence 369999999999999999999999998886
No 24
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=31.40 E-value=1.7e+02 Score=36.14 Aligned_cols=32 Identities=6% Similarity=0.064 Sum_probs=27.5
Q ss_pred CCCceEEEEEEE--CCeEEEEEcCcceEEEEecC
Q 004398 607 LMGSCVLVMLMK--DQDVYVMNLGDSRAILAQER 638 (756)
Q Consensus 607 lmGSTaLVmLIk--dedVYVANVGDSRAVLar~~ 638 (756)
.+.+|+.+++++ ...+.++|+|++++++.+.+
T Consensus 634 ~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~ 667 (764)
T TIGR02865 634 EKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA 667 (764)
T ss_pred CeEEEEEEEEEECCCCeEEEEecCCCceEEEECC
Confidence 478999998885 78899999999999987653
No 25
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=28.24 E-value=53 Score=26.51 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=17.5
Q ss_pred eEEEEEecccceEEEEEecCCCC
Q 004398 294 RVHVVLSEEQGWLFIGIYDGFSG 316 (756)
Q Consensus 294 RVhvv~SEe~GWlFvGIYDGFnG 316 (756)
+|.|+ .++-+|..|- +||+.|
T Consensus 26 ~v~v~-~~~~~W~~V~-~~g~~G 46 (55)
T PF06347_consen 26 PVRVI-ECRGGWCKVR-ADGRTG 46 (55)
T ss_pred EEEEE-EccCCeEEEE-ECCeEE
Confidence 66666 6677999999 999987
No 26
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.77 E-value=79 Score=30.67 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=26.4
Q ss_pred Ccccc---ccccCCceEEEEEecccceEEEEEec
Q 004398 282 NLQWA---HGKAGEDRVHVVLSEEQGWLFIGIYD 312 (756)
Q Consensus 282 nlQWA---~GkAGEDRVhvv~SEe~GWlFvGIYD 312 (756)
.+-|| +||-|--||-|..-.+..|+|+-||+
T Consensus 45 K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~ 78 (120)
T PF06296_consen 45 KKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYA 78 (120)
T ss_pred EEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEc
Confidence 34455 68999999999999999999998876
Done!